Citrus Sinensis ID: 004856
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 727 | 2.2.26 [Sep-21-2011] | |||||||
| Q3E6Q1 | 809 | Pentatricopeptide repeat- | yes | no | 0.925 | 0.831 | 0.339 | 1e-118 | |
| Q9SN39 | 871 | Pentatricopeptide repeat- | no | no | 0.922 | 0.770 | 0.340 | 1e-116 | |
| Q9LN01 | 741 | Pentatricopeptide repeat- | no | no | 0.863 | 0.847 | 0.354 | 1e-110 | |
| Q9STE1 | 857 | Pentatricopeptide repeat- | no | no | 0.899 | 0.763 | 0.330 | 1e-110 | |
| Q9SVP7 | 1064 | Pentatricopeptide repeat- | no | no | 0.921 | 0.629 | 0.312 | 1e-107 | |
| Q9LFL5 | 850 | Pentatricopeptide repeat- | no | no | 0.951 | 0.814 | 0.314 | 1e-104 | |
| Q9SS97 | 660 | Putative pentatricopeptid | no | no | 0.862 | 0.95 | 0.335 | 1e-104 | |
| P0C8Q2 | 654 | Pentatricopeptide repeat- | no | no | 0.818 | 0.909 | 0.347 | 1e-104 | |
| Q9SUH6 | 792 | Pentatricopeptide repeat- | no | no | 0.922 | 0.847 | 0.338 | 1e-103 | |
| Q9M9E2 | 866 | Pentatricopeptide repeat- | no | no | 0.872 | 0.732 | 0.322 | 1e-103 |
| >sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 426 bits (1095), Expect = e-118, Method: Compositional matrix adjust.
Identities = 231/681 (33%), Positives = 388/681 (56%), Gaps = 8/681 (1%)
Query: 38 LLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSL 97
LL C + + L+QI + +GL+Q + L+ + G + + +VF I S ++
Sbjct: 43 LLERCSSLKELRQI-LPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNV 101
Query: 98 LYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQV 157
LY T+LK +K + +K L + +M + P + ++++ C + G++IH +
Sbjct: 102 LYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLL 161
Query: 158 VKLGF--DSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSE 215
VK GF D F G L Y KC E K + +DL S WN++++ QNG +
Sbjct: 162 VKSGFSLDLFAMTG--LENMYAKCRQVNEARKVFDRMPERDLVS-WNTIVAGYSQNGMAR 218
Query: 216 KSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALL 275
+ E+ K M E + T++++L + L+ + +G+ +H A+ S F ++++TAL+
Sbjct: 219 MALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALV 278
Query: 276 SMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLF 335
MY+K SLE A+ LFD M +++ V WN MI AY Q+ PKE++ + M+ G +
Sbjct: 279 DMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDV 338
Query: 336 TAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV 395
+ + A+ + + + ++E G+ +H + G D VSV NSLI MYC+C++++ A +F +
Sbjct: 339 SVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKL 398
Query: 396 KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK 455
+++T+VSW++MI G+ + + ++AL FS+M+ V+ D T ++++ A + H K
Sbjct: 399 QSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAK 458
Query: 456 YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK 515
++HG M+ L+ V TA+ YAKCG I +A +FD + + + TWN+MI Y
Sbjct: 459 WIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFD--MMSERHVTTWNAMIDGYGT 516
Query: 516 HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE 575
HG +L+ +M++ ++P+ +TFL +++AC ++GLVE G F MKE+Y E S +
Sbjct: 517 HGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMD 576
Query: 576 HYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISM 635
HY +MV+LLGRAG ++EA + + MP KP V+G +L AC++H AE AE+L +
Sbjct: 577 HYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFEL 636
Query: 636 EPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQS 695
P++ G +VLL+NIY AA W V ++R + +GL+KTPGCS +EI VH F++ +
Sbjct: 637 NPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTA 696
Query: 696 HPQADAIYTILGILELEIMEG 716
HP + IY L L I E
Sbjct: 697 HPDSKKIYAFLEKLICHIKEA 717
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 421 bits (1081), Expect = e-116, Method: Compositional matrix adjust.
Identities = 234/687 (34%), Positives = 384/687 (55%), Gaps = 16/687 (2%)
Query: 37 SLLNLCENPQHLQQIHA--RYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
S+L LC + + L+ +I +G + L S L Y N G L + +VF+ +
Sbjct: 99 SVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIE 158
Query: 95 NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
+L + ++ L+K G++ ++ ++K+M + T+ V +S S L GE++H
Sbjct: 159 KALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLH 218
Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRK-FKDLKSR----WNSLISLAV 209
++K GF + VG++LV FY+K N++ RK F ++ R WNS+I+ V
Sbjct: 219 GFILKSGFGERNSVGNSLVAFYLK------NQRVDSARKVFDEMTERDVISWNSIINGYV 272
Query: 210 QNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLS 269
NG +EK +F M + G E D T++++ + + + LGR VH + V + F ++
Sbjct: 273 SNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDR 332
Query: 270 VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG 329
LL MYSK L+ AK +F +MSD+ V + MI+ Y + G E+++L M G
Sbjct: 333 FCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEG 392
Query: 330 FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCAR 389
D++T A ++ + + ++ GK++H + N + + V N+L+DMY +C + A
Sbjct: 393 ISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAE 452
Query: 390 KIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG-VEVDFVTIINILPACVNI 448
+F ++ K ++SW+++I GY + + EAL LF+ + E D T+ +LPAC ++
Sbjct: 453 LVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASL 512
Query: 449 GALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNS 508
A + + +HGY M+ G S V ++ YAKCG + +A LFD+ I SKD+++W
Sbjct: 513 SAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDD--IASKDLVSWTV 570
Query: 509 MISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESY 568
MI+ Y HG + L+ QM+Q+ + D I+F+ LL AC ++GLV+EG F M+
Sbjct: 571 MIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHEC 630
Query: 569 GYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELT 628
EP+ EHYA +V++L R G + +A +++MP PDA +WG LL C++H + +LAE
Sbjct: 631 KIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKV 690
Query: 629 AEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHE 688
AEK+ +EPEN G YVL++NIYA A KW V ++R + RGL+K PGCSWIEI V+
Sbjct: 691 AEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNI 750
Query: 689 FWAADQSHPQADAIYTILGILELEIME 715
F A D S+P+ + I L + ++E
Sbjct: 751 FVAGDSSNPETENIEAFLRKVRARMIE 777
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 401 bits (1030), Expect = e-110, Method: Compositional matrix adjust.
Identities = 251/709 (35%), Positives = 385/709 (54%), Gaps = 81/709 (11%)
Query: 10 SLQSGHVKFLRFPANQTRPHMTATH--SFSLLNLCENPQHLQQIHARYIILHGLHQNLIL 67
++ S F P++ P+ + + S SLL+ C+ Q L+ IHA+ I + GLH
Sbjct: 9 TVPSSSYPFHFLPSSSDPPYDSIRNHPSLSLLHNCKTLQSLRIIHAQMIKI-GLHNTNYA 67
Query: 68 SSNLIDS---YANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMAL 124
S LI+ + L + VF +I PN L++ T+ + + + L +Y M
Sbjct: 68 LSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMIS 127
Query: 125 QSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFE 184
+ P T+PFV++SC+ F G++IH V+KLG D ++ Y+
Sbjct: 128 LGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCD---------LDLYVH------ 172
Query: 185 NEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTV 244
SLIS+ VQNG+ E + ++F
Sbjct: 173 -----------------TSLISMYVQNGRLEDAHKVFD---------------------- 193
Query: 245 ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNI 304
KS +D+ TAL+ Y+ +E+A+ LFD++ KD V WN
Sbjct: 194 --KSPH---------------RDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNA 236
Query: 305 MISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG 364
MIS Y ++G KE+LEL M+++ R D T + VS+ + +IE G+Q+H + +G
Sbjct: 237 MISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHG 296
Query: 365 SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFS 424
+ + N+LID+Y +C +L A +F+ + K V+SW+++I GY + EAL LF
Sbjct: 297 FGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQ 356
Query: 425 EMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL--GLNSLSSVNTAIFISYAK 482
EM G + VT+++ILPAC ++GA++ +++H Y K G+ + SS+ T++ YAK
Sbjct: 357 EMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAK 416
Query: 483 CGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFL 542
CG IE A ++F+ I K + +WN+MI +A HG F L+++M++ ++PD ITF+
Sbjct: 417 CGDIEAAHQVFNS--ILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFV 474
Query: 543 GLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPF 602
GLL+AC ++G+++ GR IF+ M + Y P EHY M++LLG +G EA E++ M
Sbjct: 475 GLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEM 534
Query: 603 KPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKM 662
+PD +W LL ACKMH EL E AE LI +EPEN G+YVLLSNIYA+AG+WN VAK
Sbjct: 535 EPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKT 594
Query: 663 RTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILEL 711
R L D+G+KK PGCS IEI +VHEF D+ HP+ IY +L +E+
Sbjct: 595 RALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEV 643
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 400 bits (1028), Expect = e-110, Method: Compositional matrix adjust.
Identities = 218/659 (33%), Positives = 369/659 (55%), Gaps = 5/659 (0%)
Query: 60 GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
G+ N ++S+LI +Y G + + ++F+ + + +++ +L +K G + + +
Sbjct: 168 GMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGF 227
Query: 120 KQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC 179
M + + P T+ V+ C+ L G ++H VV G D + ++L+ Y KC
Sbjct: 228 SVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKC 287
Query: 180 DGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINL 239
G F++ + + + WN +IS VQ+G E+S F M G D+ T +L
Sbjct: 288 -GRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSL 346
Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
L S + ++LE + +HC + D+ + +AL+ Y K + A+ +F + + D
Sbjct: 347 LPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDV 406
Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHAN 359
VV+ MIS Y +G +SLE+ +V+ + T ++ + I + ++ G+++H
Sbjct: 407 VVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGF 466
Query: 360 VLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEA 419
+++ G D + ++ ++IDMY +C +N A +IF+ + + +VSW+SMI D A
Sbjct: 467 IIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAA 526
Query: 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479
+ +F +M + G+ D V+I L AC N+ + K +HG+ +K L S + +
Sbjct: 527 IDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDM 586
Query: 480 YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQM-KQSDVRPDL 538
YAKCG ++ A +F K K+I++WNS+I+A HG L+ +M ++S +RPD
Sbjct: 587 YAKCGNLKAAMNVFKTMK--EKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQ 644
Query: 539 ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVK 598
ITFL ++++C + G V+EG F+ M E YG +P QEHYA +V+L GRAG + EA E VK
Sbjct: 645 ITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVK 704
Query: 599 DMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNG 658
MPF PDA VWG LL AC++H ELAE+ + KL+ ++P N+G YVL+SN +A A +W
Sbjct: 705 SMPFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWES 764
Query: 659 VAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI-MEG 716
V K+R+ +++R ++K PG SWIEI K H F + D +HP++ IY++L L E+ +EG
Sbjct: 765 VTKVRSLMKEREVQKIPGYSWIEINKRTHLFVSGDVNHPESSHIYSLLNSLLGELRLEG 823
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 389 bits (999), Expect = e-107, Method: Compositional matrix adjust.
Identities = 212/678 (31%), Positives = 375/678 (55%), Gaps = 8/678 (1%)
Query: 30 MTATHSFS-LLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQ 85
M ++FS +L+ C+ + L+ Q+H + L G + + + L+ Y +LG L ++
Sbjct: 285 MPTPYAFSSVLSACKKIESLEIGEQLHGLVLKL-GFSSDTYVCNALVSLYFHLGNLISAE 343
Query: 86 QVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLL 145
+F++++ +++ Y T++ LS+ G EK + ++K+M L + P +T ++ +CS
Sbjct: 344 HIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADG 403
Query: 146 DFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLI 205
G+++HA KLGF S + + AL+ Y KC ++ + +++ WN ++
Sbjct: 404 TLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENV-VLWNVML 462
Query: 206 SLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFC 265
SF +F+ M++E + T ++L++ + L LELG +H + ++F
Sbjct: 463 VAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQ 522
Query: 266 KDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM 325
+ V + L+ MY+KL L+ A + + + KD V W MI+ Y Q F ++L M
Sbjct: 523 LNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQM 582
Query: 326 VRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDL 385
+ G R+D AVS+ + ++ ++ G+Q+HA +G + N+L+ +Y C +
Sbjct: 583 LDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKI 642
Query: 386 NCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPAC 445
+ F+ + ++W++++ G+ + EALR+F M EG++ + T + + A
Sbjct: 643 EESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAA 702
Query: 446 VNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIIT 505
++ K +H K G +S + V A+ YAKCG I A + F E + +K+ ++
Sbjct: 703 SETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLE--VSTKNEVS 760
Query: 506 WNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMK 565
WN++I+AY+KHG S+ + QM S+VRP+ +T +G+L+AC + GLV++G F+ M
Sbjct: 761 WNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMN 820
Query: 566 ESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
YG P EHY +V++L RAG + A+E +++MP KPDA VW LLSAC +H E+
Sbjct: 821 SEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIG 880
Query: 626 ELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKL 685
E A L+ +EPE++ YVLLSN+YA + KW+ R ++++G+KK PG SWIE+
Sbjct: 881 EFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNS 940
Query: 686 VHEFWAADQSHPQADAIY 703
+H F+ DQ+HP AD I+
Sbjct: 941 IHSFYVGDQNHPLADEIH 958
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 381 bits (979), Expect = e-104, Method: Compositional matrix adjust.
Identities = 237/753 (31%), Positives = 391/753 (51%), Gaps = 61/753 (8%)
Query: 4 LLPPACSLQSGHVKFLRFPANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQ 63
L+P A + ++K F + + P +T ++ C+ ++ IH + + L
Sbjct: 6 LIPNAAAKSHQYIKVSLF--STSAPEITP----PFIHKCKTISQVKLIHQKLLSFGILTL 59
Query: 64 NLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLY--GTILKNLSKFGEYEKTLLVYKQ 121
NL +S+LI +Y ++G LS + + ++ +Y +++++ G K L ++
Sbjct: 60 NL--TSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGL 117
Query: 122 MALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDG 181
M S P T+PFV ++C + GE HA + GF S VG+ALV Y +C
Sbjct: 118 MHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRS 177
Query: 182 GFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRME-GAEFDSGTLINLL 240
+ K + D+ S WNS+I + GK + + E+F M E G D+ TL+N+L
Sbjct: 178 LSDARKVFDEMSVWDVVS-WNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVL 236
Query: 241 RSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRV 300
L + LG+ +HC AV S+ +++ V L+ MY+K +++A +F MS KD V
Sbjct: 237 PPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVV 296
Query: 301 VWNIM-----------------------------------ISAYYQSGFPKESLELLMCM 325
WN M IS Y Q G E+L + M
Sbjct: 297 SWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQM 356
Query: 326 VRSGFRADLFTAIAAVSSISTMKNIEWGKQMHA-------NVLRNGSDYQVSVHNSLIDM 378
+ SG + + T I+ +S +++ + GK++H ++ +NG + V N LIDM
Sbjct: 357 LSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDM 416
Query: 379 YCECEDLNCARKIFDSV--KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEV--D 434
Y +C+ ++ AR +FDS+ K + VV+W+ MI GY H + +AL L SEM E + +
Sbjct: 417 YAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPN 476
Query: 435 FVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLS-SVNTAIFISYAKCGCIEMAGELF 493
TI L AC ++ AL K +H Y+++ N++ V+ + YAKCG I A +F
Sbjct: 477 AFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVF 536
Query: 494 DEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL 553
D + +K+ +TW S+++ Y HG + ++ +M++ + D +T L +L AC ++G+
Sbjct: 537 DN--MMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGM 594
Query: 554 VEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLL 613
+++G F MK +G P EHYA +V+LLGRAG ++ A L+++MP +P VW L
Sbjct: 595 IDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFL 654
Query: 614 SACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKK 673
S C++H + EL E AEK+ + + G+Y LLSN+YA AG+W V ++R+ +R +G+KK
Sbjct: 655 SCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKK 714
Query: 674 TPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
PGCSW+E K F+ D++HP A IY +L
Sbjct: 715 RPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVL 747
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SS97|PP205_ARATH Putative pentatricopeptide repeat-containing protein At3g01580 OS=Arabidopsis thaliana GN=PCMP-E87 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 380 bits (977), Expect = e-104, Method: Compositional matrix adjust.
Identities = 214/638 (33%), Positives = 355/638 (55%), Gaps = 11/638 (1%)
Query: 84 SQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSC 143
++Q+F +T + + T+LK+LS+ ++E+ L + M P T P +++C
Sbjct: 13 ARQMFGEMTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGE 72
Query: 144 LLDFISGEKIHAQV---VKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR 200
L + GE IH V V LG D + VG +L+ YIKC E + + + D+ +
Sbjct: 73 LREVNYGEMIHGFVKKDVTLGSDLY--VGSSLIYMYIKCGRMIEALRMFDELEKPDIVT- 129
Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEG-AEFDSGTLINLLRSTVELKSLELGRIVHCVA 259
W+S++S +NG ++ E F+ M M D TLI L+ + +L + LGR VH
Sbjct: 130 WSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFV 189
Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL 319
+ F DLS+ +LL+ Y+K + ++A LF +++KD + W+ +I+ Y Q+G E+L
Sbjct: 190 IRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEAL 249
Query: 320 ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMY 379
+ M+ G ++ T + + + + ++E G++ H +R G + +V V +L+DMY
Sbjct: 250 LVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTALVDMY 309
Query: 380 CECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG-VEVDFVTI 438
+C A +F + K VVSW ++I G+ + + ++ FS M LE D + +
Sbjct: 310 MKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILM 369
Query: 439 INILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI 498
+ +L +C +G LE K H Y +K G +S + ++ Y++CG + A ++F+ I
Sbjct: 370 VKVLGSCSELGFLEQAKCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFN--GI 427
Query: 499 DSKDIITWNSMISAYAKHGDWSQCFKLYTQM-KQSDVRPDLITFLGLLTACVNAGLVEEG 557
KD + W S+I+ Y HG ++ + + M K S+V+P+ +TFL +L+AC +AGL+ EG
Sbjct: 428 ALKDTVVWTSLITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACSHAGLIHEG 487
Query: 558 RIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACK 617
IFK M Y P+ EHYA +V+LLGR G +D A E+ K MPF P ++ G LL AC+
Sbjct: 488 LRIFKLMVNDYRLAPNLEHYAVLVDLLGRVGDLDTAIEITKRMPFSPTPQILGTLLGACR 547
Query: 618 MHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGC 677
+H E+AE A+KL +E +AG Y+L+SN+Y G+W V K+R ++ RG+KK
Sbjct: 548 IHQNGEMAETVAKKLFELESNHAGYYMLMSNVYGVKGEWENVEKLRNSVKQRGIKKGLAE 607
Query: 678 SWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
S IEI + VH F A D+ HP+ + +Y +L L+L + E
Sbjct: 608 SLIEIRRKVHRFVADDELHPEKEPVYGLLKELDLHMKE 645
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C8Q2|PP323_ARATH Pentatricopeptide repeat-containing protein At4g19191, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 379 bits (973), Expect = e-104, Method: Compositional matrix adjust.
Identities = 209/601 (34%), Positives = 340/601 (56%), Gaps = 6/601 (0%)
Query: 114 KTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALV 173
++LL++++M P T+PFV ++C+ L D E +HA ++K F S VG A V
Sbjct: 35 ESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVHAHLIKSPFWSDVFVGTATV 94
Query: 174 EFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDS 233
+ ++KC+ + + +R + + WN+++S Q+G ++K+F LF+ MR+ DS
Sbjct: 95 DMFVKCNS-VDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFSLFREMRLNEITPDS 153
Query: 234 GTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDK 293
T++ L++S KSL+L +H V + ++V +S Y K L+ AK++F+
Sbjct: 154 VTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVFEA 213
Query: 294 MSDKDRVV--WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIE 351
+ DR V WN M AY G ++ L M+R F+ DL T I +S + +
Sbjct: 214 IDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLT 273
Query: 352 WGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYV 411
G+ +H++ + G+D + N+ I MY + ED AR +FD + ++T VSW+ MI GY
Sbjct: 274 QGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYA 333
Query: 412 THDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSS 471
EAL LF M G + D VT+++++ C G+LE K++ + G +
Sbjct: 334 EKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARADIYGCKRDNV 393
Query: 472 -VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMK 530
+ A+ Y+KCG I A ++FD K ++TW +MI+ YA +G + + KL+++M
Sbjct: 394 MICNALIDMYSKCGSIHEARDIFDNTP--EKTVVTWTTMIAGYALNGIFLEALKLFSKMI 451
Query: 531 QSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHM 590
D +P+ ITFL +L AC ++G +E+G F MK+ Y P +HY+ MV+LLGR G +
Sbjct: 452 DLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKL 511
Query: 591 DEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIY 650
+EA EL+++M KPDA +WG LL+ACK+H ++AE AE L ++EP+ A YV ++NIY
Sbjct: 512 EEALELIRNMSAKPDAGIWGALLNACKIHRNVKIAEQAAESLFNLEPQMAAPYVEMANIY 571
Query: 651 AAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILE 710
AAAG W+G A++R+ ++ R +KK PG S I++ H F + H + + IY L L
Sbjct: 572 AAAGMWDGFARIRSIMKQRNIKKYPGESVIQVNGKNHSFTVGEHGHVENEVIYFTLNGLS 631
Query: 711 L 711
L
Sbjct: 632 L 632
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 377 bits (968), Expect = e-103, Method: Compositional matrix adjust.
Identities = 230/680 (33%), Positives = 357/680 (52%), Gaps = 9/680 (1%)
Query: 47 HLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNL 106
HL Q HA+ IILHG ++ L + L ++LG + ++ +F S+ P+ L+ +++
Sbjct: 35 HLAQTHAQ-IILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGF 93
Query: 107 SKFGEYEKTLLVYKQMALQS-MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF 165
S +L V+ + + + P TY F I + S D +G IH Q V G DS
Sbjct: 94 SVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSE 153
Query: 166 DDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFK-LM 224
+G +V+ Y K E+ + + R + WN++IS +N +S ++F+ L+
Sbjct: 154 LLLGSNIVKMYFKF-WRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLI 212
Query: 225 RMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASL 284
D+ TL+++L + EL+ L LG +H +A + V T +S+YSK +
Sbjct: 213 NESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKI 272
Query: 285 EDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSI 344
+ LF + D V +N MI Y +G + SL L ++ SG R + VS +
Sbjct: 273 KMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAR---LRSSTLVSLV 329
Query: 345 STMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWS 404
++ +H L++ SV +L +Y + ++ ARK+FD K++ SW+
Sbjct: 330 PVSGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWN 389
Query: 405 SMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL 464
+MI GY + + +A+ LF EM+ + VTI IL AC +GAL K++H
Sbjct: 390 AMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRST 449
Query: 465 GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFK 524
S V+TA+ YAKCG I A LFD + K+ +TWN+MIS Y HG +
Sbjct: 450 DFESSIYVSTALIGMYAKCGSIAEARRLFD--LMTKKNEVTWNTMISGYGLHGQGQEALN 507
Query: 525 LYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLL 584
++ +M S + P +TFL +L AC +AGLV+EG IF M YG+EPS +HYA MV++L
Sbjct: 508 IFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDIL 567
Query: 585 GRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYV 644
GRAGH+ A + ++ M +P + VW LL AC++H +T LA +EKL ++P+N G +V
Sbjct: 568 GRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHV 627
Query: 645 LLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYT 704
LLSNI++A + A +R + R L K PG + IEIG+ H F + DQSHPQ IY
Sbjct: 628 LLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYE 687
Query: 705 ILGILELEIMEGRRESSEEL 724
L LE ++ E + EL
Sbjct: 688 KLEKLEGKMREAGYQPETEL 707
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M9E2|PPR45_ARATH Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 376 bits (965), Expect = e-103, Method: Compositional matrix adjust.
Identities = 207/641 (32%), Positives = 358/641 (55%), Gaps = 7/641 (1%)
Query: 67 LSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMA-LQ 125
L + + + G L + VF ++ N + ++ +K G +++ + +Y +M +
Sbjct: 131 LGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVG 190
Query: 126 SMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFEN 185
+ P T+P V+R+C + D G+++H VV+ G++ DV +AL+ Y+KC G ++
Sbjct: 191 GVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKC-GDVKS 249
Query: 186 EKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVE 245
+ + R + WN++IS +NG + ELF MR + D TL +++ +
Sbjct: 250 ARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACEL 309
Query: 246 LKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIM 305
L LGR +H + + F D+SV +L MY S +A+ LF +M KD V W M
Sbjct: 310 LGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTM 369
Query: 306 ISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS 365
IS Y + P ++++ M + + D T A +S+ +T+ +++ G ++H ++
Sbjct: 370 ISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARL 429
Query: 366 DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSE 425
V V N+LI+MY +C+ ++ A IF ++ K V+SW+S+I G +++ EAL +
Sbjct: 430 ISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFLRQ 489
Query: 426 MKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGC 485
MK+ ++ + +T+ L AC IGAL K +H + ++ G+ + A+ Y +CG
Sbjct: 490 MKMT-LQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGR 548
Query: 486 IEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLL 545
+ A F+ +K KD+ +WN +++ Y++ G S +L+ +M +S VRPD ITF+ LL
Sbjct: 549 MNTAWSQFNSQK---KDVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLL 605
Query: 546 TACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPD 605
C + +V +G + F +M E YG P+ +HYA +V+LLGRAG + EA + ++ MP PD
Sbjct: 606 CGCSKSQMVRQGLMYFSKM-EDYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPD 664
Query: 606 ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTF 665
VWG LL+AC++H + +L EL+A+ + ++ ++ G Y+LL N+YA GKW VAK+R
Sbjct: 665 PAVWGALLNACRIHHKIDLGELSAQHIFELDKKSVGYYILLCNLYADCGKWREVAKVRRM 724
Query: 666 LRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
+++ GL GCSW+E+ VH F + D+ HPQ I T+L
Sbjct: 725 MKENGLTVDAGCSWVEVKGKVHAFLSDDKYHPQTKEINTVL 765
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 727 | ||||||
| 449455116 | 722 | PREDICTED: pentatricopeptide repeat-cont | 0.962 | 0.969 | 0.631 | 0.0 | |
| 449526313 | 706 | PREDICTED: pentatricopeptide repeat-cont | 0.940 | 0.968 | 0.616 | 0.0 | |
| 357450559 | 1040 | Pentatricopeptide repeat protein [Medica | 0.932 | 0.651 | 0.598 | 0.0 | |
| 449471512 | 607 | PREDICTED: pentatricopeptide repeat-cont | 0.825 | 0.988 | 0.639 | 0.0 | |
| 148909481 | 795 | unknown [Picea sitchensis] | 0.841 | 0.769 | 0.370 | 1e-126 | |
| 328774753 | 1020 | pentatricopeptide repeat protein 78 [Fun | 0.931 | 0.663 | 0.346 | 1e-125 | |
| 168044807 | 902 | predicted protein [Physcomitrella patens | 0.925 | 0.746 | 0.346 | 1e-124 | |
| 449523792 | 821 | PREDICTED: pentatricopeptide repeat-cont | 0.921 | 0.816 | 0.362 | 1e-123 | |
| 225436612 | 694 | PREDICTED: pentatricopeptide repeat-cont | 0.929 | 0.974 | 0.362 | 1e-122 | |
| 449458783 | 821 | PREDICTED: pentatricopeptide repeat-cont | 0.921 | 0.816 | 0.361 | 1e-122 |
| >gi|449455116|ref|XP_004145299.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 884 bits (2284), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/709 (63%), Positives = 537/709 (75%), Gaps = 9/709 (1%)
Query: 18 FLRFPANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYAN 77
FL FPA Q+R T + FS C + QHLQQIHAR+I LHG HQN LSS LID YAN
Sbjct: 16 FLNFPATQSRLLNTLSLLFSR---CNSIQHLQQIHARFI-LHGFHQNPTLSSKLIDCYAN 71
Query: 78 LGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFV 137
LGLL+ S QVF S+ PN L+ IL+NL+++GE E+TLLVY+QM +SM+P E+TYPFV
Sbjct: 72 LGLLNHSLQVFCSVIDPNLTLFNAILRNLTRYGESERTLLVYQQMVAKSMHPDEETYPFV 131
Query: 138 IRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI-QRKFKD 196
+RSCS + G IH +VKLGFD FD V AL E Y +C FEN + +R KD
Sbjct: 132 LRSCSSFSNVGFGRTIHGYLVKLGFDLFDVVATALAEMYEECIE-FENAHQLFDKRSVKD 190
Query: 197 LKSRW-NSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIV 255
L W +SL + QN E F +F M E DS T NLLR L S++L +IV
Sbjct: 191 LG--WPSSLTTEGPQNDNGEGIFRVFGRMIAEQLVPDSFTFFNLLRFIAGLNSIQLAKIV 248
Query: 256 HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFP 315
HC+A+VS DL VNTA+LS+YSKL SL DA+ LFDKM +KDRVVWNIMI+AY + G P
Sbjct: 249 HCIAIVSKLSGDLLVNTAVLSLYSKLRSLVDARKLFDKMPEKDRVVWNIMIAAYAREGKP 308
Query: 316 KESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSL 375
E LEL M RSG R+DLFTA+ +SSI+ +K ++WGKQ HA++LRNGSD QVSVHNSL
Sbjct: 309 TECLELFKSMARSGIRSDLFTALPVISSIAQLKCVDWGKQTHAHILRNGSDSQVSVHNSL 368
Query: 376 IDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF 435
IDMYCEC+ L+ A KIF+ + K+V+SWS+MIKGYV + QSL AL LFS+MK +G++ DF
Sbjct: 369 IDMYCECKILDSACKIFNWMTDKSVISWSAMIKGYVKNGQSLTALSLFSKMKSDGIQADF 428
Query: 436 VTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE 495
V +INILPA V+IGALE+VKYLHGYSMKLGL SL S+NTA+ I+YAKCG IEMA LF+E
Sbjct: 429 VIMINILPAFVHIGALENVKYLHGYSMKLGLTSLPSLNTALLITYAKCGSIEMAQRLFEE 488
Query: 496 EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVE 555
EKID KD+I WNSMISA+A HGDWSQCFKLY +MK S+ +PD +TFLGLLTACVN+GLVE
Sbjct: 489 EKIDDKDLIMWNSMISAHANHGDWSQCFKLYNRMKCSNSKPDQVTFLGLLTACVNSGLVE 548
Query: 556 EGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
+G+ FKEM ESYG +PSQEHYA MVNLLGRAG + EA ELVK+MP KPDARVWGPLLSA
Sbjct: 549 KGKEFFKEMTESYGCQPSQEHYACMVNLLGRAGLISEAGELVKNMPIKPDARVWGPLLSA 608
Query: 616 CKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTP 675
CKMH ++LAE AEKLI+MEP NAGNY+LLSNIYAAAGKW+GVAKMR+FLR++GLKK P
Sbjct: 609 CKMHPGSKLAEFAAEKLINMEPRNAGNYILLSNIYAAAGKWDGVAKMRSFLRNKGLKKIP 668
Query: 676 GCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEGRRESSEEL 724
GCSW+EI V EF ADQ+HP+A IYTILG LELEI E R +S + L
Sbjct: 669 GCSWLEINGHVTEFRVADQTHPRAGDIYTILGNLELEIKEVREKSPDTL 717
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449526313|ref|XP_004170158.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 851 bits (2198), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/709 (61%), Positives = 523/709 (73%), Gaps = 25/709 (3%)
Query: 18 FLRFPANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYAN 77
FL FPA Q+R T + FS C + QHLQQIHAR+I LHG HQN LSS LID YAN
Sbjct: 16 FLNFPATQSRLLNTLSLLFSR---CNSIQHLQQIHARFI-LHGFHQNPTLSSKLIDCYAN 71
Query: 78 LGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFV 137
LGLL+ S QVF S+ PN L+ IL+NL+++GE E+TLLVY+QM +SM+P E+TYPFV
Sbjct: 72 LGLLNHSLQVFCSVIDPNLTLFNAILRNLTRYGESERTLLVYQQMVAKSMHPDEETYPFV 131
Query: 138 IRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI-QRKFKD 196
+RSCS + G IH +VKLGFD FD V AL E Y +C FEN + +R KD
Sbjct: 132 LRSCSSFSNVGFGRTIHGYLVKLGFDLFDVVATALAEMYEECIE-FENAHQLFDKRSVKD 190
Query: 197 LKSRW-NSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIV 255
L W +SL + QN E F +F M E DS T NLLR L S++L +IV
Sbjct: 191 LG--WPSSLTTEGPQNDNGEGIFRVFGRMIAEQLVPDSFTFFNLLRFIAGLNSIQLAKIV 248
Query: 256 HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFP 315
HC+A+VS DL VNTA+LS+YSKL SL DA+ LFDKM +KDRVVWNIMI+AY + G P
Sbjct: 249 HCIAIVSKLSGDLLVNTAVLSLYSKLRSLVDARKLFDKMPEKDRVVWNIMIAAYAREGKP 308
Query: 316 KESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSL 375
E LEL M RSG R+DLFTA+ +SSI+ +K ++WGKQ HA++LRNGSD QVSVHNSL
Sbjct: 309 TECLELFKSMARSGIRSDLFTALPVISSIAQLKCVDWGKQTHAHILRNGSDSQVSVHNSL 368
Query: 376 IDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF 435
IDMYCEC+ L+ A KIF+ ++T SL AL LFS+MK +G++ DF
Sbjct: 369 IDMYCECKILDSACKIFN----------------WMTDKSSLTALSLFSKMKSDGIQADF 412
Query: 436 VTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE 495
V +INILPA V+IGALE+VKYLHGYSMKLGL SL S+NTA+ I+YAKCG IEMA LF+E
Sbjct: 413 VIMINILPAFVHIGALENVKYLHGYSMKLGLTSLPSLNTALLITYAKCGSIEMAQRLFEE 472
Query: 496 EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVE 555
EKID KD+I WNSMISA+A HGDWSQCFKLY +MK S+ +PD +TFLGLLTACVN+GLVE
Sbjct: 473 EKIDDKDLIMWNSMISAHANHGDWSQCFKLYNRMKCSNSKPDQVTFLGLLTACVNSGLVE 532
Query: 556 EGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
+G+ FKEM ESYG +PSQEHYA MVNLLGRAG + EA ELVK+MP KPDARVWGPLLSA
Sbjct: 533 KGKEFFKEMTESYGCQPSQEHYACMVNLLGRAGLISEAGELVKNMPIKPDARVWGPLLSA 592
Query: 616 CKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTP 675
CKMH ++LAE AEKLI+MEP NAGNY+LLSNIYAAAGKW+GVAKMR+FLR++GLKK P
Sbjct: 593 CKMHPGSKLAEFAAEKLINMEPRNAGNYILLSNIYAAAGKWDGVAKMRSFLRNKGLKKIP 652
Query: 676 GCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEGRRESSEEL 724
GCSW+EI V EF ADQ+HP+A IYTILG LELEI E R +S + L
Sbjct: 653 GCSWLEINGHVTEFRVADQTHPRAGDIYTILGNLELEIKEVREKSPDTL 701
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357450559|ref|XP_003595556.1| Pentatricopeptide repeat protein [Medicago truncatula] gi|355484604|gb|AES65807.1| Pentatricopeptide repeat protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 840 bits (2171), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/697 (59%), Positives = 525/697 (75%), Gaps = 19/697 (2%)
Query: 22 PANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLL 81
P TR T + S+LNLC PQ+LQQIHAR+ LHGLHQN LSS LIDSY+N GLL
Sbjct: 14 PFQTTRFFNTTS---SILNLCTKPQYLQQIHARFF-LHGLHQNSSLSSKLIDSYSNFGLL 69
Query: 82 SLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSC 141
S ++F+ +P+S++Y L+NL FGEYEKTL +YK+M +SM P ED V++S
Sbjct: 70 HFSHKIFSFTENPDSIIYNAFLRNLFMFGEYEKTLFLYKEMVQKSMCPDEDCCFSVLKS- 128
Query: 142 SCLLDFISGEK-----IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKD 196
L ++ EK H VVKLG D+FD VG+ L+E Y GF N G+++RK
Sbjct: 129 ---LFYVFHEKGLIMMAHGHVVKLGMDAFDLVGNTLIELY-----GFLNGNGLVERKSVT 180
Query: 197 LKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVH 256
+ WN+LI A ++GK +SFELF MR E + +S TLINLLR+TVE SL++G+++H
Sbjct: 181 KLNFWNNLIYEAYESGKIVESFELFCRMRNENVQPNSVTLINLLRATVESNSLKIGKVLH 240
Query: 257 CVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPK 316
+ V S+ CK+L+VNTALLSMY+KL SL+DA+++F+KM +KD VVWNIMIS Y SG PK
Sbjct: 241 SLVVASNLCKELTVNTALLSMYAKLDSLKDARLMFEKMPEKDVVVWNIMISVYSGSGCPK 300
Query: 317 ESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLI 376
ESLEL+ CMVRSG R D+FTAI A+SSI+ +K+IEWGKQ+HA V+RNGSDYQVSVHNSL+
Sbjct: 301 ESLELVYCMVRSGIRPDMFTAIPAISSITKLKSIEWGKQLHAQVIRNGSDYQVSVHNSLV 360
Query: 377 DMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFV 436
DMY C DLN ARKIF +K +TVVSWS+MIKGY HD LEAL LF EMKL G +VD V
Sbjct: 361 DMYSTCADLNSARKIFGLIKDRTVVSWSAMIKGYAMHDNCLEALSLFIEMKLSGTKVDLV 420
Query: 437 TIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEE 496
+INILPA IGAL +V YLHGYS+K L+SL S+ T++ SYAKCGCIEMA +LF+EE
Sbjct: 421 IVINILPAFAKIGALHYVGYLHGYSLKTNLDSLKSLKTSLLNSYAKCGCIEMARKLFNEE 480
Query: 497 KIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEE 556
K KDI+ WNSMI+AY+ HG+W QCF+LY Q+K S V+PD +TFLG+LTACVN+GLV++
Sbjct: 481 KSSLKDIVAWNSMITAYSNHGEWFQCFELYNQIKLSIVKPDHVTFLGMLTACVNSGLVDK 540
Query: 557 GRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSAC 616
G+ IFKEM + YG++PS+EH A MV+LLGRAG +DEAR++++ DARV+GPLLSAC
Sbjct: 541 GKEIFKEMVDIYGFQPSKEHNACMVDLLGRAGKIDEARKIIETNQLNSDARVYGPLLSAC 600
Query: 617 KMHS-ETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTP 675
KMH ET+ AEL AEKLI MEPEN NYVLLSNI+AAAGKW+ AKMR+FLRDRGLKKTP
Sbjct: 601 KMHGLETDFAELAAEKLIKMEPENPANYVLLSNIFAAAGKWDKFAKMRSFLRDRGLKKTP 660
Query: 676 GCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELE 712
GCSW+ + HEF AD SHP+++ IY++L +LELE
Sbjct: 661 GCSWVVLDGQFHEFRVADHSHPRSEDIYSVLKVLELE 697
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449471512|ref|XP_004153331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/605 (63%), Positives = 463/605 (76%), Gaps = 5/605 (0%)
Query: 122 MALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDG 181
M +SM+P E+TYPFV+RSCS + G IH +VKLGFD FD V AL E Y +C
Sbjct: 1 MVAKSMHPDEETYPFVLRSCSSFSNVGFGRTIHGYLVKLGFDLFDVVATALAEMYEECIE 60
Query: 182 GFENEKGMI-QRKFKDLKSRW-NSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINL 239
FEN + +R KDL W +SL + QN E F +F M E DS T NL
Sbjct: 61 -FENAHQLFDKRSVKDLG--WPSSLTTEGPQNDNGEGIFRVFGRMIAEQLVPDSFTFFNL 117
Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
LR L S++L +IVHC+A+VS DL VNTA+LS+YSKL SL DA+ LFDKM +KDR
Sbjct: 118 LRFIAGLNSIQLAKIVHCIAIVSKLSGDLLVNTAVLSLYSKLRSLVDARKLFDKMPEKDR 177
Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHAN 359
VVWNIMI+AY + G P E LEL M RSG R+DLFTA+ +SSI+ +K ++WGKQ HA+
Sbjct: 178 VVWNIMIAAYAREGKPTECLELFKSMARSGIRSDLFTALPVISSIAQLKCVDWGKQTHAH 237
Query: 360 VLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEA 419
+LRNGSD QVSVHNSLIDMYCEC+ L+ A KIF+ + K+V+SWS+MIKGYV + QSL A
Sbjct: 238 ILRNGSDSQVSVHNSLIDMYCECKILDSACKIFNWMTDKSVISWSAMIKGYVKNGQSLTA 297
Query: 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479
L LFS+MK +G++ DFV +INILPA V+IGALE+VKYLHGYSMKLGL SL S+NTA+ I+
Sbjct: 298 LSLFSKMKSDGIQADFVIMINILPAFVHIGALENVKYLHGYSMKLGLTSLPSLNTALLIT 357
Query: 480 YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI 539
YAKCG IEMA LF+EEKID KD+I WNSMISA+A HGDWSQCFKLY +MK S+ +PD +
Sbjct: 358 YAKCGSIEMAQRLFEEEKIDDKDLIMWNSMISAHANHGDWSQCFKLYNRMKCSNSKPDQV 417
Query: 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKD 599
TFLGLLTACVN+GLVE+G+ FKEM ESYG +PSQEHYA MVNLLGRAG + EA ELVK+
Sbjct: 418 TFLGLLTACVNSGLVEKGKEFFKEMTESYGCQPSQEHYACMVNLLGRAGLISEAGELVKN 477
Query: 600 MPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGV 659
MP KPDARVWGPLLSACKMH ++LAE AEKLI+MEP NAGNY+LLSNIYAAAGKW+GV
Sbjct: 478 MPIKPDARVWGPLLSACKMHPGSKLAEFAAEKLINMEPRNAGNYILLSNIYAAAGKWDGV 537
Query: 660 AKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEGRRE 719
AKMR+FLR++GLKK PGCSW+EI V EF ADQ+HP+A IYTILG LELEI E R +
Sbjct: 538 AKMRSFLRNKGLKKIPGCSWLEINGHVTEFRVADQTHPRAGDIYTILGNLELEIKEVREK 597
Query: 720 SSEEL 724
S + L
Sbjct: 598 SPDTL 602
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis] | Back alignment and taxonomy information |
|---|
Score = 460 bits (1184), Expect = e-126, Method: Compositional matrix adjust.
Identities = 228/615 (37%), Positives = 366/615 (59%), Gaps = 3/615 (0%)
Query: 95 NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
N++++ + K G + K L +Y QM + P + + VI++C D +G K+H
Sbjct: 84 NAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVH 143
Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKS 214
++ GF+S VG AL Y KC G EN + + R K WN++I+ QNG+
Sbjct: 144 EDIIARGFESDVIVGTALASMYTKC-GSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQP 202
Query: 215 EKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTAL 274
++ LF M++ G + +S TL++++ L +LE G+ +HC A+ S D+ V L
Sbjct: 203 YEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGL 262
Query: 275 LSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADL 334
++MY+K ++ A LF++M +D WN +I Y + E+L M G + +
Sbjct: 263 VNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNS 322
Query: 335 FTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDS 394
T ++ + + + + +E G+Q+H +R+G + V N+L++MY +C ++N A K+F+
Sbjct: 323 ITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFER 382
Query: 395 VKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHV 454
+ K VV+W+++I GY H EAL LF EM+ +G++ D I+++LPAC + ALE
Sbjct: 383 MPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQG 442
Query: 455 KYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYA 514
K +HGY+++ G S V T + YAKCG + A +LF E++ +D+++W +MI AY
Sbjct: 443 KQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLF--ERMPEQDVVSWTTMILAYG 500
Query: 515 KHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQ 574
HG L+++M+++ + D I F +LTAC +AGLV++G F+ MK YG P
Sbjct: 501 IHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKL 560
Query: 575 EHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLIS 634
EHYA +V+LLGRAGH+DEA ++K+M +PDA VWG LL AC++H EL E A+ L
Sbjct: 561 EHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFE 620
Query: 635 MEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQ 694
++P+NAG YVLLSNIYA A +W VAK+R ++++G+KK PGCS + + + V F D+
Sbjct: 621 LDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQTFLVGDR 680
Query: 695 SHPQADAIYTILGIL 709
+HPQ++ IY +L IL
Sbjct: 681 THPQSEQIYAMLEIL 695
|
Source: Picea sitchensis Species: Picea sitchensis Genus: Picea Family: Pinaceae Order: Coniferales Class: Coniferopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica] | Back alignment and taxonomy information |
|---|
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 238/687 (34%), Positives = 399/687 (58%), Gaps = 10/687 (1%)
Query: 35 SFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSN----LIDSYANLGLLSLSQQVFNS 90
+ LL+ C++P L+ R I + + L+ N +++ YA G + +++VF+
Sbjct: 247 TMRLLSSCKSPSALEC--GREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDK 304
Query: 91 ITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISG 150
+ + + + + I+ + G E ++++M + + P TY V+ + S G
Sbjct: 305 METKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWG 364
Query: 151 EKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQ 210
+ +H+ ++ G +S VG ALV+ Y KC G +++ + + ++ WN++I +
Sbjct: 365 KTVHSHILNAGHESDLAVGTALVKMYAKC-GSYKDCRQVFEKLVNRDLIAWNTMIGGLAE 423
Query: 211 NGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSV 270
G E++ E++ M+ EG + T + LL + V +L GR +H V F D+SV
Sbjct: 424 GGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISV 483
Query: 271 NTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330
AL+SMY++ S++DA++LF+KM KD + W MI +SG E+L + M ++G
Sbjct: 484 QNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGL 543
Query: 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK 390
+ + T + +++ S+ ++WG+++H V+ G V N+L++MY C + AR+
Sbjct: 544 KPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQ 603
Query: 391 IFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA 450
+FD + + +V++++MI GY H+ EAL+LF ++ EG++ D VT IN+L AC N G+
Sbjct: 604 VFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGS 663
Query: 451 LEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMI 510
LE K +H +K G S +S+ A+ +YAKCG A +FD K+ +++I+WN++I
Sbjct: 664 LEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFD--KMMKRNVISWNAII 721
Query: 511 SAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGY 570
A+HG +L+ +MK ++PD++TF+ LL+AC +AGL+EEGR F M +G
Sbjct: 722 GGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDFGI 781
Query: 571 EPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAE 630
P+ EHY MV+LLGRAG +DE L+K MPF+ + R+WG LL AC++H +AE AE
Sbjct: 782 TPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAE 841
Query: 631 KLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFW 690
+ ++P+NA YV LS++YAAAG W+ AK+R + RG+ K PG SWIE+G +H F
Sbjct: 842 SSLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIEVGDKLHYFV 901
Query: 691 AADQSHPQADAIYTILGILELEI-MEG 716
A D+SHP+++ IY L L + MEG
Sbjct: 902 AEDRSHPESEKIYAELDKLTHAMKMEG 928
|
Source: Funaria hygrometrica Species: Funaria hygrometrica Genus: Funaria Family: Funariaceae Order: Funariales Class: Bryopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens] gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens] | Back alignment and taxonomy information |
|---|
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 236/682 (34%), Positives = 398/682 (58%), Gaps = 9/682 (1%)
Query: 28 PHMTATHSFSLLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLS 84
P T SF L+ C++P L+ +IH + + GL ++ +++ +++ YA G + +
Sbjct: 124 PDRTTIMSF--LSSCKSPGALEWGREIHFQ-AMQAGLLFDVKVANCILNMYAKCGSIEEA 180
Query: 85 QQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCL 144
++VF+ + + + + + + G E ++++M + + P TY V+ + S
Sbjct: 181 REVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSP 240
Query: 145 LDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSL 204
G+ +H++++ G +S VG ALV+ Y KC G +++ + + ++ WN++
Sbjct: 241 AALKWGKAVHSRILNAGHESDTAVGTALVKMYAKC-GSYKDCRQVFEKLVNRDLIAWNTM 299
Query: 205 ISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDF 264
I + G E++ E++ M+ EG + T + LL + V +L G+ +H + F
Sbjct: 300 IGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGF 359
Query: 265 CKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMC 324
D+ V AL+SMYS+ S++DA+++FDKM KD + W MI +SGF E+L +
Sbjct: 360 TSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQE 419
Query: 325 MVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECED 384
M ++G + T + +++ S+ +EWG+++H V+ G V N+L++MY C
Sbjct: 420 MQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGS 479
Query: 385 LNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPA 444
+ AR++FD + + +V++++MI GY H+ EAL+LF ++ EG++ D VT IN+L A
Sbjct: 480 VKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNA 539
Query: 445 CVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDII 504
C N G+LE + +H K G S +SV A+ +YAKCG A +F EK+ +++I
Sbjct: 540 CANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVF--EKMTKRNVI 597
Query: 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM 564
+WN++I A+HG +L+ +MK V+PD++TF+ LL+AC +AGL+EEGR F M
Sbjct: 598 SWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSM 657
Query: 565 KESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETEL 624
+ + P+ EHY MV+LLGRAG +DEA L+K MPF+ + R+WG LL AC++H +
Sbjct: 658 SQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLGACRIHGNVPV 717
Query: 625 AELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGK 684
AE AE + ++ +NA YV LS++YAAAG W+ AK+R + RG+ K PG SWI++G
Sbjct: 718 AERAAESSLKLDLDNAVVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIQVGD 777
Query: 685 LVHEFWAADQSHPQADAIYTIL 706
+H F A D+SHPQ++ IY L
Sbjct: 778 KLHYFVAEDRSHPQSEKIYAEL 799
|
Source: Physcomitrella patens subsp. patens Species: Physcomitrella patens Genus: Physcomitrella Family: Funariaceae Order: Funariales Class: Bryopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 246/678 (36%), Positives = 392/678 (57%), Gaps = 8/678 (1%)
Query: 38 LLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSL 97
LL LC + + L QI +I +GL+ + + L+ ++ G ++ + +VF I
Sbjct: 55 LLELCTSMKELHQI-IPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDA 113
Query: 98 LYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQV 157
LY T+LK +K E L +M + P + ++++ C D G++IH Q+
Sbjct: 114 LYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQL 173
Query: 158 VKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKS 217
+ F + +V Y KC + K + +DL S WN++I+ QNG ++K+
Sbjct: 174 ITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVS-WNTIIAGFSQNGFAKKA 232
Query: 218 FELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSM 277
EL M+ EG DS TL+ +L + ++ L +G+ +H A+ + F K ++++TAL M
Sbjct: 233 LELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADM 292
Query: 278 YSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTA 337
YSK S+E A+++FD M K V WN M+ Y Q+G P++++ + M+ G T
Sbjct: 293 YSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTI 352
Query: 338 IAAVSSISTMKNIEWGKQMHANV--LRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV 395
+ A+ + + + ++E GK +H V L GSD +SV NSLI MY +C+ ++ A IF+++
Sbjct: 353 MEALHACADLGDLERGKFVHKFVDQLNLGSD--ISVMNSLISMYSKCKRVDIASDIFNNL 410
Query: 396 KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK 455
+T VSW++MI GY + + EAL FSEMK G++ D T+++++PA + H K
Sbjct: 411 NGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAK 470
Query: 456 YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK 515
++HG ++ L+ V TA+ Y+KCG I MA +LFD I + +ITWN+MI Y
Sbjct: 471 WIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFD--MISDRHVITWNAMIDGYGT 528
Query: 516 HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE 575
HG L+ +MK+ V P+ IT+L +++AC ++GLV+EG FK MK+ YG EPS +
Sbjct: 529 HGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMD 588
Query: 576 HYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISM 635
HY +MV+LLGRAG + EA + +++MP P V+G +L ACK+H E+ E A+KL +
Sbjct: 589 HYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKNIEVGEKAAKKLFEL 648
Query: 636 EPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQS 695
P+ G +VLL+NIYA+ KW+ VA++R + +GLKKTPGCS +E+ VH F++ +
Sbjct: 649 NPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTT 708
Query: 696 HPQADAIYTILGILELEI 713
HPQ+ IY L L EI
Sbjct: 709 HPQSKRIYAFLEELVYEI 726
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein At5g27110-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 249/686 (36%), Positives = 395/686 (57%), Gaps = 10/686 (1%)
Query: 30 MTATHSFSLLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQ 86
M T SLL C + ++L+Q IH + + L GL N+ L +LI+ Y + L ++
Sbjct: 1 MDTTKLLSLLKTCIDSKYLKQGKLIHQKIVSL-GLQNNITLCKSLINLYFSCHLFQSAKL 59
Query: 87 VFNSITSPNSL-LYGTILKNLSK-FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCL 144
VF +I +P + L+ ++ +K F E + ++ + + P TYP V+++CS L
Sbjct: 60 VFQTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGL 119
Query: 145 LDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSL 204
G+ +H V+K GF V + V Y KC+ FE+ + + + WN++
Sbjct: 120 GRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNV-FEDAIKLFDEMPERDVASWNNV 178
Query: 205 ISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDF 264
IS Q+G+ EK+ ELF+ M++ G + DS TL ++ S L LE G+ +H V S F
Sbjct: 179 ISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGF 238
Query: 265 CKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMC 324
D V++AL+ MY K LE AK +F+++ K+ V WN MI+ Y G K +EL
Sbjct: 239 ALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRR 298
Query: 325 MVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECED 384
M G R L T + + + S N++ GK +H ++RN + + V++SLID+Y +C +
Sbjct: 299 MDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGN 358
Query: 385 LNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPA 444
+ A +F ++ VVSW+ MI GYV LEAL +F++M+ GV+ D +T ++LPA
Sbjct: 359 IGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPA 418
Query: 445 CVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDII 504
C + LE K +H + ++ L V A+ YAKCG ++ A +F++ + +D +
Sbjct: 419 CSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQ--LPERDFV 476
Query: 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM 564
+W SMI+AY HG + KL+ +M+QSD +PD +TFL +L+AC +AGLV+EG F +M
Sbjct: 477 SWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQM 536
Query: 565 KESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP-FKPDARVWGPLLSACKMHSETE 623
YG++P+ EHY+ +++LLGR G + EA E+++ P + D + L SAC +H + +
Sbjct: 537 IAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSACHLHKKLD 596
Query: 624 LAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIG 683
L E LI +P++ Y++LSN+YA+ KW+ V K+R +++ GLKK PGCSWIE+G
Sbjct: 597 LGEQIGRLLIEKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCSWIEVG 656
Query: 684 KLVHEFWAADQSHPQADAIYTILGIL 709
K +H F D+SHPQAD IY + IL
Sbjct: 657 KRIHPFVVEDKSHPQADMIYECMSIL 682
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 245/678 (36%), Positives = 390/678 (57%), Gaps = 8/678 (1%)
Query: 38 LLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSL 97
LL LC + + L QI +I +GL+ + + L+ ++ G ++ + +VF I
Sbjct: 55 LLELCTSMKELHQI-IPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDA 113
Query: 98 LYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQV 157
LY T+LK +K E L +M + P + ++++ C D G++IH Q+
Sbjct: 114 LYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQL 173
Query: 158 VKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKS 217
+ F + +V Y KC + K + +DL S WN++I+ QNG ++K+
Sbjct: 174 ITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVS-WNTIIAGFSQNGFAKKA 232
Query: 218 FELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSM 277
EL M+ EG DS TL+ +L + ++ L +G+ +H A+ + F K ++++TAL M
Sbjct: 233 LELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADM 292
Query: 278 YSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTA 337
YSK S+E A+++FD M K V WN M+ Y Q+G P++++ + M+ G T
Sbjct: 293 YSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTI 352
Query: 338 IAAVSSISTMKNIEWGKQMHANV--LRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV 395
+ A+ + + + ++E GK +H V L GSD +SV NSLI MY +C+ ++ A IF+++
Sbjct: 353 MEALHACADLGDLERGKFVHKFVDQLNLGSD--ISVMNSLISMYSKCKRVDIASDIFNNL 410
Query: 396 KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK 455
+T VSW++MI GY + + EAL FSEMK G++ D T+++++PA + H K
Sbjct: 411 NGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAK 470
Query: 456 YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK 515
++HG ++ L+ V TA+ Y+KCG I MA +LFD I + +ITWN+MI Y
Sbjct: 471 WIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFD--MISDRHVITWNAMIDGYGT 528
Query: 516 HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE 575
HG L+ +MK+ V P+ IT+L +++AC ++GLV+EG FK MK+ YG EPS +
Sbjct: 529 HGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMD 588
Query: 576 HYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISM 635
HY +MV+LLGRAG + EA + +++MP P V+G ACK+H E+ E A+KL +
Sbjct: 589 HYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAXXGACKIHKNIEVGEKAAKKLFEL 648
Query: 636 EPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQS 695
P+ G +VLL+NIYA+ KW+ VA++R + +GLKKTPGCS +E+ VH F++ +
Sbjct: 649 NPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTT 708
Query: 696 HPQADAIYTILGILELEI 713
HPQ+ IY L L EI
Sbjct: 709 HPQSKRIYAFLEELVYEI 726
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 727 | ||||||
| TAIR|locus:2205200 | 741 | OTP82 "AT1G08070" [Arabidopsis | 0.612 | 0.600 | 0.403 | 4.5e-105 | |
| TAIR|locus:2202074 | 809 | CRR22 "CHLORORESPIRATORY REDUC | 0.924 | 0.830 | 0.327 | 7.5e-105 | |
| TAIR|locus:2124137 | 871 | DOT4 "DEFECTIVELY ORGANIZED TR | 0.928 | 0.774 | 0.332 | 8.8e-102 | |
| TAIR|locus:2119440 | 1064 | AT4G13650 [Arabidopsis thalian | 0.921 | 0.629 | 0.308 | 7.6e-99 | |
| TAIR|locus:2141171 | 857 | AT4G21300 [Arabidopsis thalian | 0.898 | 0.761 | 0.322 | 1.2e-97 | |
| TAIR|locus:2095289 | 1028 | AT3G09040 "AT3G09040" [Arabido | 0.892 | 0.631 | 0.322 | 6.1e-94 | |
| TAIR|locus:2181201 | 691 | AT5G27110 [Arabidopsis thalian | 0.938 | 0.986 | 0.322 | 6.1e-94 | |
| TAIR|locus:2196583 | 866 | ECB2 "EARLY CHLOROPLAST BIOGEN | 0.933 | 0.784 | 0.306 | 7.8e-94 | |
| TAIR|locus:2096414 | 882 | AT3G03580 [Arabidopsis thalian | 0.910 | 0.750 | 0.302 | 3e-92 | |
| TAIR|locus:4515103421 | 654 | AT4G19191 "AT4G19191" [Arabido | 0.818 | 0.909 | 0.334 | 5e-92 |
| TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 872 (312.0 bits), Expect = 4.5e-105, Sum P(2) = 4.5e-105
Identities = 182/451 (40%), Positives = 274/451 (60%)
Query: 266 KDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM 325
+D+ TAL+ Y+ +E+A+ LFD++ KD V WN MIS Y ++G KE+LEL M
Sbjct: 198 RDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDM 257
Query: 326 VRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDL 385
+++ R D T + VS+ + +IE G+Q+H + +G + + N+LID+Y +C +L
Sbjct: 258 MKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGEL 317
Query: 386 NCARKIFDXXXXXXXXXXXXMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPAC 445
A +F+ +I GY + EAL LF EM G + VT+++ILPAC
Sbjct: 318 ETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPAC 377
Query: 446 VNIGALEHVKYLHGYSMKL--GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI 503
++GA++ +++H Y K G+ + SS+ T++ YAKCG IE A ++F+ I K +
Sbjct: 378 AHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNS--ILHKSL 435
Query: 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKE 563
+WN+MI +A HG F L+++M++ ++PD ITF+GLL+AC ++G+++ GR IF+
Sbjct: 436 SSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRT 495
Query: 564 MKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSXXX 623
M + Y P EHY M++LLG +G EA E++ M +PD +W LL ACKMH
Sbjct: 496 MTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVE 555
Query: 624 XXXXXXXKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIG 683
LI +EPEN G+YVLLSNIYA+AG+WN VAK R L D+G+KK PGCS IEI
Sbjct: 556 LGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEID 615
Query: 684 KLVHEFWAADQSHPQADAIYTILGILELEIM 714
+VHEF D+ HP+ IY +L E+E++
Sbjct: 616 SVVHEFIIGDKFHPRNREIYGMLE--EMEVL 644
|
|
| TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1038 (370.5 bits), Expect = 7.5e-105, P = 7.5e-105
Identities = 223/680 (32%), Positives = 373/680 (54%)
Query: 38 LLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSL 97
LL C + + L+QI + +GL+Q + L+ + G + + +VF I S ++
Sbjct: 43 LLERCSSLKELRQI-LPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNV 101
Query: 98 LYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQV 157
LY T+LK +K + +K L + +M + P + ++++ C + G++IH +
Sbjct: 102 LYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLL 161
Query: 158 VKLGF--DSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSE 215
VK GF D F G L Y KC E K + +DL S WN++++ QNG +
Sbjct: 162 VKSGFSLDLFAMTG--LENMYAKCRQVNEARKVFDRMPERDLVS-WNTIVAGYSQNGMAR 218
Query: 216 KSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALL 275
+ E+ K M E + T++++L + L+ + +G+ +H A+ S F ++++TAL+
Sbjct: 219 MALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALV 278
Query: 276 SMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLF 335
MY+K SLE A+ LFD M +++ V WN MI AY Q+ PKE++ + M+ G +
Sbjct: 279 DMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDV 338
Query: 336 TAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDXX 395
+ + A+ + + + ++E G+ +H + G D VSV NSLI MYC+C++++ A +F
Sbjct: 339 SVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKL 398
Query: 396 XXXXXXXXXXMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK 455
MI G+ + + ++AL FS+M+ V+ D T ++++ A + H K
Sbjct: 399 QSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAK 458
Query: 456 YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK 515
++HG M+ L+ V TA+ YAKCG I +A +FD + + + TWN+MI Y
Sbjct: 459 WIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFD--MMSERHVTTWNAMIDGYGT 516
Query: 516 HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE 575
HG +L+ +M++ ++P+ +TFL +++AC ++GLVE G F MKE+Y E S +
Sbjct: 517 HGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMD 576
Query: 576 HYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSXXXXXXXXXXKLISM 635
HY +MV+LLGRAG ++EA + + MP KP V+G +L AC++H +L +
Sbjct: 577 HYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFEL 636
Query: 636 EPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQS 695
P++ G +VLL+NIY AA W V ++R + +GL+KTPGCS +EI VH F++ +
Sbjct: 637 NPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTA 696
Query: 696 HPQADAIYTILGILELEIME 715
HP + IY L L I E
Sbjct: 697 HPDSKKIYAFLEKLICHIKE 716
|
|
| TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1009 (360.2 bits), Expect = 8.8e-102, P = 8.8e-102
Identities = 227/683 (33%), Positives = 367/683 (53%)
Query: 37 SLLNLCENPQHLQQIHA--RYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
S+L LC + + L+ +I +G + L S L Y N G L + +VF+ +
Sbjct: 99 SVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIE 158
Query: 95 NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
+L + ++ L+K G++ ++ ++K+M + T+ V +S S L GE++H
Sbjct: 159 KALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLH 218
Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKS 214
++K GF + VG++LV FY+K K + +D+ S WNS+I+ V NG +
Sbjct: 219 GFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVIS-WNSIINGYVSNGLA 277
Query: 215 EKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCK-DLSVNTA 273
EK +F M + G E D T++++ + + + LGR VH + V + F + D NT
Sbjct: 278 EKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNT- 336
Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
LL MYSK L+ AK +F +MSD+ V + MI+ Y + G E+++L M G D
Sbjct: 337 LLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPD 396
Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD 393
++T A ++ + + ++ GK++H + N + + V N+L+DMY +C + A +F
Sbjct: 397 VYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFS 456
Query: 394 XXXXXXXXXXXXMIKGYVTHDQSLEALRLFSEMKLEG-VEVDFVTIINILPACVNIGALE 452
+I GY + + EAL LF+ + E D T+ +LPAC ++ A +
Sbjct: 457 EMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFD 516
Query: 453 HVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
+ +HGY M+ G S V ++ YAKCG + +A LFD+ I SKD+++W MI+
Sbjct: 517 KGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDD--IASKDLVSWTVMIAG 574
Query: 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP 572
Y HG + L+ QM+Q+ + D I+F+ LL AC ++GLV+EG F M+ EP
Sbjct: 575 YGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEP 634
Query: 573 SQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSXXXXXXXXXXKL 632
+ EHYA +V++L R G + +A +++MP PDA +WG LL C++H K+
Sbjct: 635 TVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKV 694
Query: 633 ISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAA 692
+EPEN G YVL++NIYA A KW V ++R + RGL+K PGCSWIEI V+ F A
Sbjct: 695 FELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAG 754
Query: 693 DQSHPQADAIYTILGILELEIME 715
D S+P+ + I L + ++E
Sbjct: 755 DSSNPETENIEAFLRKVRARMIE 777
|
|
| TAIR|locus:2119440 AT4G13650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 956 (341.6 bits), Expect = 7.6e-99, Sum P(2) = 7.6e-99
Identities = 209/678 (30%), Positives = 361/678 (53%)
Query: 30 MTATHSFS-LLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQ 85
M ++FS +L+ C+ + L+ Q+H + L G + + + L+ Y +LG L ++
Sbjct: 285 MPTPYAFSSVLSACKKIESLEIGEQLHGLVLKL-GFSSDTYVCNALVSLYFHLGNLISAE 343
Query: 86 QVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLL 145
+F++++ +++ Y T++ LS+ G EK + ++K+M L + P +T ++ +CS
Sbjct: 344 HIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADG 403
Query: 146 DFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLI 205
G+++HA KLGF S + + AL+ Y KC E + WN ++
Sbjct: 404 TLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKC-ADIETALDYFLETEVENVVLWNVML 462
Query: 206 SLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFC 265
SF +F+ M++E + T ++L++ + L LELG +H + ++F
Sbjct: 463 VAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQ 522
Query: 266 KDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM 325
+ V + L+ MY+KL L+ A + + + KD V W MI+ Y Q F ++L M
Sbjct: 523 LNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQM 582
Query: 326 VRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDL 385
+ G R+D AVS+ + ++ ++ G+Q+HA +G + N+L+ +Y C +
Sbjct: 583 LDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKI 642
Query: 386 NCARKIFDXXXXXXXXXXXXMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPAC 445
+ F+ ++ G+ + EALR+F M EG++ + T + + A
Sbjct: 643 EESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAA 702
Query: 446 VNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIIT 505
++ K +H K G +S + V A+ YAKCG I A + F E + +K+ ++
Sbjct: 703 SETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLE--VSTKNEVS 760
Query: 506 WNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMK 565
WN++I+AY+KHG S+ + QM S+VRP+ +T +G+L+AC + GLV++G F+ M
Sbjct: 761 WNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMN 820
Query: 566 ESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSXXXXX 625
YG P EHY +V++L RAG + A+E +++MP KPDA VW LLSAC +H
Sbjct: 821 SEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIG 880
Query: 626 XXXXXKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKL 685
L+ +EPE++ YVLLSN+YA + KW+ R ++++G+KK PG SWIE+
Sbjct: 881 EFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNS 940
Query: 686 VHEFWAADQSHPQADAIY 703
+H F+ DQ+HP AD I+
Sbjct: 941 IHSFYVGDQNHPLADEIH 958
|
|
| TAIR|locus:2141171 AT4G21300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 970 (346.5 bits), Expect = 1.2e-97, P = 1.2e-97
Identities = 213/660 (32%), Positives = 359/660 (54%)
Query: 60 GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
G+ N ++S+LI +Y G + + ++F+ + + +++ +L +K G + + +
Sbjct: 168 GMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGF 227
Query: 120 KQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC 179
M + + P T+ V+ C+ L G ++H VV G D + ++L+ Y KC
Sbjct: 228 SVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKC 287
Query: 180 DGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINL 239
G F++ + + + WN +IS VQ+G E+S F M G D+ T +L
Sbjct: 288 -GRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSL 346
Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
L S + ++LE + +HC + D+ + +AL+ Y K + A+ +F + + D
Sbjct: 347 LPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDV 406
Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHAN 359
VV+ MIS Y +G +SLE+ +V+ + T ++ + I + ++ G+++H
Sbjct: 407 VVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGF 466
Query: 360 VLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDXXXXXXXXXXXXMIKGYVTHDQSLEA 419
+++ G D + ++ ++IDMY +C +N A +IF+ MI D A
Sbjct: 467 IIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAA 526
Query: 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS-LSSVNTAIFI 478
+ +F +M + G+ D V+I L AC N+ + K +HG+ +K L S + S +T I +
Sbjct: 527 IDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDM 586
Query: 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQM-KQSDVRPD 537
YAKCG ++ A +F K K+I++WNS+I+A HG L+ +M ++S +RPD
Sbjct: 587 -YAKCGNLKAAMNVFKTMK--EKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPD 643
Query: 538 LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELV 597
ITFL ++++C + G V+EG F+ M E YG +P QEHYA +V+L GRAG + EA E V
Sbjct: 644 QITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETV 703
Query: 598 KDMPFKPDARVWGPLLSACKMHSXXXXXXXXXXKLISMEPENAGNYVLLSNIYAAAGKWN 657
K MPF PDA VWG LL AC++H KL+ ++P N+G YVL+SN +A A +W
Sbjct: 704 KSMPFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWE 763
Query: 658 GVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI-MEG 716
V K+R+ +++R ++K PG SWIEI K H F + D +HP++ IY++L L E+ +EG
Sbjct: 764 SVTKVRSLMKEREVQKIPGYSWIEINKRTHLFVSGDVNHPESSHIYSLLNSLLGELRLEG 823
|
|
| TAIR|locus:2095289 AT3G09040 "AT3G09040" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 935 (334.2 bits), Expect = 6.1e-94, P = 6.1e-94
Identities = 213/661 (32%), Positives = 350/661 (52%)
Query: 51 IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFG 110
+HA I L GL N+ + S+L+ Y+ + + +VF ++ N + + +++ + G
Sbjct: 349 VHAEAIKL-GLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNG 407
Query: 111 EYEKTLLVYKQMALQSMYPAED-TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVG 169
E K + ++ M S Y +D T+ ++ +C+ D G + H+ ++K VG
Sbjct: 408 ESHKVMELFMDMK-SSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVG 466
Query: 170 DALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGA 229
+ALV+ Y KC G E+ + + +R WN++I VQ+ ++F+LFK M + G
Sbjct: 467 NALVDMYAKC-GALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGI 525
Query: 230 EFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKM 289
D L + L++ + L G+ VHC++V +DL ++L+ MYSK ++DA+
Sbjct: 526 VSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARK 585
Query: 290 LFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKN 349
+F + + V N +I+ Y Q+ +E++ L M+ G T V + ++
Sbjct: 586 VFSSLPEWSVVSMNALIAGYSQNNL-EEAVVLFQEMLTRGVNPSEITFATIVEACHKPES 644
Query: 350 IEWGKQMHANVLRNG-SDYQVSVHNSLIDMYCECEDLNCARKIF-DXXXXXXXXXXXXMI 407
+ G Q H + + G S + SL+ MY + A +F + M+
Sbjct: 645 LTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMM 704
Query: 408 KGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG-- 465
G+ + EAL+ + EM+ +GV D T + +L C + +L + +H L
Sbjct: 705 SGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHD 764
Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
L+ L+S NT I + YAKCG ++ + ++FDE + S ++++WNS+I+ YAK+G K+
Sbjct: 765 LDELTS-NTLIDM-YAKCGDMKGSSQVFDEMRRRS-NVVSWNSLINGYAKNGYAEDALKI 821
Query: 526 YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
+ M+QS + PD ITFLG+LTAC +AG V +GR IF+ M YG E +H A MV+LLG
Sbjct: 822 FDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLG 881
Query: 586 RAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSXXXXXXXXXXKLISMEPENAGNYVL 645
R G++ EA + ++ KPDAR+W LL AC++H KLI +EP+N+ YVL
Sbjct: 882 RWGYLQEADDFIEAQNLKPDARLWSSLLGACRIHGDDIRGEISAEKLIELEPQNSSAYVL 941
Query: 646 LSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTI 705
LSNIYA+ G W +R +RDRG+KK PG SWI++ + H F A D+SH + I
Sbjct: 942 LSNIYASQGCWEKANALRKVMRDRGVKKVPGYSWIDVEQRTHIFAAGDKSHSEIGKIEMF 1001
Query: 706 L 706
L
Sbjct: 1002 L 1002
|
|
| TAIR|locus:2181201 AT5G27110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 935 (334.2 bits), Expect = 6.1e-94, P = 6.1e-94
Identities = 225/697 (32%), Positives = 371/697 (53%)
Query: 30 MTATHSFSLLNLCENP----QHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQ 85
M ++ SLL C N + ++ +H R + L GL ++++L +LI+ Y ++
Sbjct: 1 MESSKLLSLLRECTNSTKSLRRIKLVHQRILTL-GLRRDVVLCKSLINVYFTCKDHCSAR 59
Query: 86 QVFNSITSPNSL-LYGTILKNLSKFGEYEKTLLVYKQMALQSM-YPAEDTYPFVIRSCSC 143
VF + + + ++ +++ SK + TL V+K++ S+ P T+P VI++
Sbjct: 60 HVFENFDIRSDVYIWNSLMSGYSKNSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGA 119
Query: 144 L-LDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI-QRKFKDLKSRW 201
L +F+ G IH VVK G+ V +LV Y K + FEN + + +D+ S W
Sbjct: 120 LGREFL-GRMIHTLVVKSGYVCDVVVASSLVGMYAKFNL-FENSLQVFDEMPERDVAS-W 176
Query: 202 NSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVV 261
N++IS Q+G++EK+ ELF M G E +S +L + + L LE G+ +H V
Sbjct: 177 NTVISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVK 236
Query: 262 SDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLEL 321
F D VN+AL+ MY K LE A+ +F KM K V WN MI Y G K +E+
Sbjct: 237 KGFELDEYVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEI 296
Query: 322 LMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCE 381
L M+ G R T + + + S +N+ GK +H V+R+ + + V+ SLID+Y +
Sbjct: 297 LNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFK 356
Query: 382 CEDLNCARKIFDXXXXXXXXXXXXMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINI 441
C + N A +F MI Y++ +A+ ++ +M GV+ D VT ++
Sbjct: 357 CGEANLAETVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSV 416
Query: 442 LPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK 501
LPAC + ALE K +H + L + + +A+ Y+KCG + A +F+ I K
Sbjct: 417 LPACSQLAALEKGKQIHLSISESRLETDELLLSALLDMYSKCGNEKEAFRIFNS--IPKK 474
Query: 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIF 561
D+++W MISAY HG + + +M++ ++PD +T L +L+AC +AGL++EG F
Sbjct: 475 DVVSWTVMISAYGSHGQPREALYQFDEMQKFGLKPDGVTLLAVLSACGHAGLIDEGLKFF 534
Query: 562 KEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPD-ARVWGPLLSACKMHS 620
+M+ YG EP EHY+ M+++LGRAG + EA E+++ P D A + L SAC +H
Sbjct: 535 SQMRSKYGIEPIIEHYSCMIDILGRAGRLLEAYEIIQQTPETSDNAELLSTLFSACCLHL 594
Query: 621 XXXXXXXXXXKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWI 680
L+ P++A Y++L N+YA+ W+ ++R +++ GL+K PGCSWI
Sbjct: 595 EHSLGDRIARLLVENYPDDASTYMVLFNLYASGESWDAARRVRLKMKEMGLRKKPGCSWI 654
Query: 681 EIGKLVHEFWAADQSHPQADAIYTILGILELEIMEGR 717
E+ V F+A D+SH +A+ +Y L +L + G+
Sbjct: 655 EMSDKVCHFFAEDRSHLRAENVYECLALLSGHMESGQ 691
|
|
| TAIR|locus:2196583 ECB2 "EARLY CHLOROPLAST BIOGENESIS2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 934 (333.8 bits), Expect = 7.8e-94, P = 7.8e-94
Identities = 212/691 (30%), Positives = 364/691 (52%)
Query: 37 SLLNLCENPQHLQQIHARY-IILHGLHQ-NLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
+L+ LCE + ++ Y I L + + L + + + G L + VF ++
Sbjct: 99 ALVRLCEWKRAQEEGSKVYSIALSSMSSLGVELGNAFLAMFVRFGNLVDAWYVFGKMSER 158
Query: 95 NSLLYGTILKNLSKFGEYEKTLLVYKQMA-LQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
N + ++ +K G +++ + +Y +M + + P T+P V+R+C + D G+++
Sbjct: 159 NLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEV 218
Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRK-FKDLKSRWNSLISLAVQNG 212
H VV+ G++ DV +AL+ Y+KC G ++ + + R +D+ S WN++IS +NG
Sbjct: 219 HVHVVRYGYELDIDVVNALITMYVKC-GDVKSARLLFDRMPRRDIIS-WNAMISGYFENG 276
Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNT 272
+ ELF MR + D TL +++ + L LGR +H + + F D+SV
Sbjct: 277 MCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCN 336
Query: 273 ALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA 332
+L MY S +A+ LF +M KD V W MIS Y + P ++++ M + +
Sbjct: 337 SLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKP 396
Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF 392
D T A +S+ +T+ +++ G ++H ++ V V N+LI+MY +C+ ++ A IF
Sbjct: 397 DEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIF 456
Query: 393 DXXXXXXXXXXXXMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
+I G +++ EAL +MK+ ++ + +T+ L AC IGAL
Sbjct: 457 HNIPRKNVISWTSIIAGLRLNNRCFEALIFLRQMKMT-LQPNAITLTAALAACARIGALM 515
Query: 453 HVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
K +H + ++ G+ + A+ Y +CG + A F+ +K KD+ +WN +++
Sbjct: 516 CGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQFNSQK---KDVTSWNILLTG 572
Query: 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP 572
Y++ G S +L+ +M +S VRPD ITF+ LL C + +V +G + F +M E YG P
Sbjct: 573 YSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGCSKSQMVRQGLMYFSKM-EDYGVTP 631
Query: 573 SQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSXXXXXXXXXXKL 632
+ +HYA +V+LLGRAG + EA + ++ MP PD VWG LL+AC++H +
Sbjct: 632 NLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGALLNACRIHHKIDLGELSAQHI 691
Query: 633 ISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAA 692
++ ++ G Y+LL N+YA GKW VAK+R +++ GL GCSW+E+ VH F +
Sbjct: 692 FELDKKSVGYYILLCNLYADCGKWREVAKVRRMMKENGLTVDAGCSWVEVKGKVHAFLSD 751
Query: 693 DQSHPQADAIYTIL-GILELEIMEGRRESSE 722
D+ HPQ I T+L G E G + SE
Sbjct: 752 DKYHPQTKEINTVLEGFYEKMSEVGLTKISE 782
|
|
| TAIR|locus:2096414 AT3G03580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 919 (328.6 bits), Expect = 3.0e-92, P = 3.0e-92
Identities = 203/671 (30%), Positives = 360/671 (53%)
Query: 60 GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
G +L + + L+D Y+ +GLL+ ++QVF+ + + + + +++ S G YE+ L +Y
Sbjct: 136 GFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIY 195
Query: 120 KQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC 179
++ + P T V+ + LL G+ +H +K G +S V + LV Y+K
Sbjct: 196 HELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKF 255
Query: 180 DGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINL 239
+ + + +D S +N++I ++ E+S +F L ++ + D T+ ++
Sbjct: 256 RRPTDARRVFDEMDVRDSVS-YNTMICGYLKLEMVEESVRMF-LENLDQFKPDLLTVSSV 313
Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
LR+ L+ L L + ++ + + F + +V L+ +Y+K + A+ +F+ M KD
Sbjct: 314 LRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDT 373
Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHAN 359
V WN +IS Y QSG E+++L M+ +AD T + +S + + ++++GK +H+N
Sbjct: 374 VSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSN 433
Query: 360 VLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDXXXXXXXXXXXXMIKGYVTHDQSLEA 419
+++G +SV N+LIDMY +C ++ + KIF +I V
Sbjct: 434 GIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATG 493
Query: 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479
L++ ++M+ V D T + LP C ++ A K +H ++ G S + A+
Sbjct: 494 LQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEM 553
Query: 480 YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI 539
Y+KCGC+E + +F E++ +D++TW MI AY +G+ + + + M++S + PD +
Sbjct: 554 YSKCGCLENSSRVF--ERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSV 611
Query: 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKD 599
F+ ++ AC ++GLV+EG F++MK Y +P EHYA +V+LL R+ + +A E ++
Sbjct: 612 VFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQA 671
Query: 600 MPFKPDARVWGPLLSACKMHSXXXXXXXXXXKLISMEPENAGNYVLLSNIYAAAGKWNGV 659
MP KPDA +W +L AC+ ++I + P++ G +L SN YAA KW+ V
Sbjct: 672 MPIKPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKV 731
Query: 660 AKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL-ELEIMEGR- 717
+ +R L+D+ + K PG SWIE+GK VH F + D S PQ++AIY L IL L EG
Sbjct: 732 SLIRKSLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEILYSLMAKEGYI 791
Query: 718 ---RESSEELK 725
RE S+ L+
Sbjct: 792 PDPREVSQNLE 802
|
|
| TAIR|locus:4515103421 AT4G19191 "AT4G19191" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 917 (327.9 bits), Expect = 5.0e-92, P = 5.0e-92
Identities = 201/601 (33%), Positives = 326/601 (54%)
Query: 114 KTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALV 173
++LL++++M P T+PFV ++C+ L D E +HA ++K F S VG A V
Sbjct: 35 ESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVHAHLIKSPFWSDVFVGTATV 94
Query: 174 EFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDS 233
+ ++KC+ + + +R + + WN+++S Q+G ++K+F LF+ MR+ DS
Sbjct: 95 DMFVKCNS-VDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFSLFREMRLNEITPDS 153
Query: 234 GTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDK 293
T++ L++S KSL+L +H V + ++V +S Y K L+ AK++F+
Sbjct: 154 VTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVFEA 213
Query: 294 MSDKDRVV--WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIE 351
+ DR V WN M AY G ++ L M+R F+ DL T I +S + +
Sbjct: 214 IDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLT 273
Query: 352 WGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDXXXXXXXXXXXXMIKGYV 411
G+ +H++ + G+D + N+ I MY + ED AR +FD MI GY
Sbjct: 274 QGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYA 333
Query: 412 THDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLS- 470
EAL LF M G + D VT+++++ C G+LE K++ + G +
Sbjct: 334 EKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARADIYGCKRDNV 393
Query: 471 SVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMK 530
+ A+ Y+KCG I A ++FD K ++TW +MI+ YA +G + + KL+++M
Sbjct: 394 MICNALIDMYSKCGSIHEARDIFDNTP--EKTVVTWTTMIAGYALNGIFLEALKLFSKMI 451
Query: 531 QSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHM 590
D +P+ ITFL +L AC ++G +E+G F MK+ Y P +HY+ MV+LLGR G +
Sbjct: 452 DLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKL 511
Query: 591 DEARELVKDMPFKPDARVWGPLLSACKMHSXXXXXXXXXXKLISMEPENAGNYVLLSNIY 650
+EA EL+++M KPDA +WG LL+ACK+H L ++EP+ A YV ++NIY
Sbjct: 512 EEALELIRNMSAKPDAGIWGALLNACKIHRNVKIAEQAAESLFNLEPQMAAPYVEMANIY 571
Query: 651 AAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILE 710
AAAG W+G A++R+ ++ R +KK PG S I++ H F + H + + IY L L
Sbjct: 572 AAAGMWDGFARIRSIMKQRNIKKYPGESVIQVNGKNHSFTVGEHGHVENEVIYFTLNGLS 631
Query: 711 L 711
L
Sbjct: 632 L 632
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q3E6Q1 | PPR32_ARATH | No assigned EC number | 0.3392 | 0.9257 | 0.8318 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 727 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-146 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-115 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-60 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-58 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-49 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 7e-29 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 9e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.001 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.002 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.003 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.003 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 449 bits (1156), Expect = e-146
Identities = 226/677 (33%), Positives = 370/677 (54%), Gaps = 8/677 (1%)
Query: 37 SLLNLCENPQHLQQIHARYIILHGLHQNL--ILSSNLIDSYANLGLLSLSQQVFNSITSP 94
+L LCE + +++ H +L L + ++ + G L + VF +
Sbjct: 91 ALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPER 150
Query: 95 NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
+ + ++ +K G +++ L +Y +M + P T+P V+R+C + D G ++H
Sbjct: 151 DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVH 210
Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKS 214
A VV+ GF+ DV +AL+ Y+KC + +D S WN++IS +NG+
Sbjct: 211 AHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCIS-WNAMISGYFENGEC 269
Query: 215 EKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTAL 274
+ ELF MR + D T+ +++ + L LGR +H V + F D+SV +L
Sbjct: 270 LEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSL 329
Query: 275 LSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADL 334
+ MY L S +A+ +F +M KD V W MIS Y ++G P ++LE M + D
Sbjct: 330 IQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE 389
Query: 335 FTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDS 394
T + +S+ + + +++ G ++H R G V V N+LI+MY +C+ ++ A ++F +
Sbjct: 390 ITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHN 449
Query: 395 VKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHV 454
+ K V+SW+S+I G +++ EAL F +M L ++ + VT+I L AC IGAL
Sbjct: 450 IPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCG 508
Query: 455 KYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYA 514
K +H + ++ G+ + A+ Y +CG + A F+ + KD+++WN +++ Y
Sbjct: 509 KEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHE---KDVVSWNILLTGYV 565
Query: 515 KHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQ 574
HG S +L+ +M +S V PD +TF+ LL AC +G+V +G F M+E Y P+
Sbjct: 566 AHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625
Query: 575 EHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLIS 634
+HYA +V+LLGRAG + EA + MP PD VWG LL+AC++H EL EL A+ +
Sbjct: 626 KHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFE 685
Query: 635 MEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQ 694
++P + G Y+LL N+YA AGKW+ VA++R +R+ GL PGCSW+E+ VH F D+
Sbjct: 686 LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDE 745
Query: 695 SHPQADAIYTIL-GILE 710
SHPQ I T+L G E
Sbjct: 746 SHPQIKEINTVLEGFYE 762
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 362 bits (930), Expect = e-115
Identities = 175/505 (34%), Positives = 277/505 (54%), Gaps = 3/505 (0%)
Query: 212 GKSEKSFELFKLMRMEGA-EFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSV 270
G+ ++ ELF+++ + T L+ + + LKS+ + V+ S F D +
Sbjct: 101 GRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYM 160
Query: 271 NTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330
+L M+ K L DA+ LFD+M +++ W +I +G +E+ L M G
Sbjct: 161 MNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGS 220
Query: 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK 390
A+ T + + + + + + G+Q+H VL+ G V +LIDMY +C D+ AR
Sbjct: 221 DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARC 280
Query: 391 IFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA 450
+FD + KT V+W+SM+ GY H S EAL L+ EM+ GV +D T ++ +
Sbjct: 281 VFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL 340
Query: 451 LEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMI 510
LEH K H ++ G NTA+ Y+K G +E A +FD ++ K++I+WN++I
Sbjct: 341 LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFD--RMPRKNLISWNALI 398
Query: 511 SAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGY 570
+ Y HG ++ +++ +M V P+ +TFL +L+AC +GL E+G IF+ M E++
Sbjct: 399 AGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRI 458
Query: 571 EPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAE 630
+P HYA M+ LLGR G +DEA +++ PFKP +W LL+AC++H EL L AE
Sbjct: 459 KPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAE 518
Query: 631 KLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFW 690
KL M PE NYV+L N+Y ++G+ AK+ L+ +GL P C+WIE+ K H F+
Sbjct: 519 KLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFF 578
Query: 691 AADQSHPQADAIYTILGILELEIME 715
+ D+ HPQ+ IY L L EI E
Sbjct: 579 SGDRLHPQSREIYQKLDELMKEISE 603
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 217 bits (554), Expect = 4e-60
Identities = 142/475 (29%), Positives = 227/475 (47%), Gaps = 38/475 (8%)
Query: 103 LKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQV----- 157
L+ L G+ E+ L + + M + ED Y + R C G ++ ++
Sbjct: 58 LRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHP 117
Query: 158 ---VKLG------FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLA 208
V+LG F F ++ A F M +R DL S WN L+
Sbjct: 118 SLGVRLGNAMLSMFVRFGELVHAWYVF-----------GKMPER---DLFS-WNVLVGGY 162
Query: 209 VQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDL 268
+ G +++ L+ M G D T +LR+ + L GR VH V F D+
Sbjct: 163 AKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDV 222
Query: 269 SVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS 328
V AL++MY K + A+++FD+M +D + WN MIS Y+++G E LEL M
Sbjct: 223 DVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMREL 282
Query: 329 GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCA 388
DL T + +S+ + + G++MH V++ G VSV NSLI MY A
Sbjct: 283 SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEA 342
Query: 389 RKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNI 448
K+F ++TK VSW++MI GY + +AL ++ M+ + V D +TI ++L AC +
Sbjct: 343 EKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACL 402
Query: 449 GALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNS 508
G L+ LH + + GL S V A+ Y+KC CI+ A E+F I KD+I+W S
Sbjct: 403 GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVF--HNIPEKDVISWTS 460
Query: 509 MISAYAKHGDWSQCFK---LYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
+I+ + ++CF+ + QM ++P+ +T + L+AC G + G+ I
Sbjct: 461 IIAGLRLN---NRCFEALIFFRQML-LTLKPNSVTLIAALSACARIGALMCGKEI 511
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 210 bits (537), Expect = 6e-58
Identities = 113/393 (28%), Positives = 208/393 (52%), Gaps = 3/393 (0%)
Query: 211 NGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSV 270
+G+ E++ +L + M+ D + L R +++E G V A+ S + +
Sbjct: 64 HGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRL 123
Query: 271 NTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330
A+LSM+ + L A +F KM ++D WN+++ Y ++G+ E+L L M+ +G
Sbjct: 124 GNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGV 183
Query: 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK 390
R D++T + + + ++ G+++HA+V+R G + V V N+LI MY +C D+ AR
Sbjct: 184 RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARL 243
Query: 391 IFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA 450
+FD + + +SW++MI GY + + LE L LF M+ V+ D +TI +++ AC +G
Sbjct: 244 VFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD 303
Query: 451 LEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMI 510
+ +HGY +K G SV ++ Y G A ++F ++++KD ++W +MI
Sbjct: 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVF--SRMETKDAVSWTAMI 361
Query: 511 SAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGY 570
S Y K+G + + Y M+Q +V PD IT +L+AC G ++ G + E+ E G
Sbjct: 362 SGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVG-VKLHELAERKGL 420
Query: 571 EPSQEHYASMVNLLGRAGHMDEARELVKDMPFK 603
+++ + + +D+A E+ ++P K
Sbjct: 421 ISYVVVANALIEMYSKCKCIDKALEVFHNIPEK 453
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 185 bits (470), Expect = 1e-49
Identities = 133/518 (25%), Positives = 241/518 (46%), Gaps = 58/518 (11%)
Query: 91 ITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMY--PAEDTYPFVIRSCSCLLDFI 148
I L I K L G + + L +++ + + PA TY ++ +C L
Sbjct: 83 IRKSGVSLCSQIEK-LVACGRHREALELFEILEAGCPFTLPAS-TYDALVEACIALKSIR 140
Query: 149 SGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI---QRKFKDLKSR----W 201
+ ++ V GF+ + + ++ ++KC GM+ +R F ++ R W
Sbjct: 141 CVKAVYWHVESSGFEPDQYMMNRVLLMHVKC--------GMLIDARRLFDEMPERNLASW 192
Query: 202 NSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVV 261
++I V G ++F LF+ M +G++ + T + +LR++ L S G+ +HC +
Sbjct: 193 GTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLK 252
Query: 262 SDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLEL 321
+ D V+ AL+ MYSK +EDA+ +FD M +K V WN M++ Y G+ +E+L L
Sbjct: 253 TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCL 312
Query: 322 LMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCE 381
M SG D FT + S + +E KQ HA ++R G + + +L+D+Y +
Sbjct: 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372
Query: 382 CEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINI 441
+ AR +FD + K ++SW+++I GY H + +A+ +F M EGV + VT + +
Sbjct: 373 WGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAV 432
Query: 442 LPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK 501
L AC YS LS IF S ++ +I +
Sbjct: 433 LSAC-------------RYS------GLSEQGWEIFQSMSE------------NHRIKPR 461
Query: 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIF 561
+ + MI + G + + + ++++ +P + + LLTAC +E GR+
Sbjct: 462 -AMHYACMIELLGREGLLDEAYAM---IRRAPFKPTVNMWAALLTACRIHKNLELGRLAA 517
Query: 562 KEMKESYGYEPSQ-EHYASMVNLLGRAGHMDEARELVK 598
+++ YG P + +Y ++NL +G EA ++V+
Sbjct: 518 EKL---YGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVE 552
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 7e-29
Identities = 78/315 (24%), Positives = 153/315 (48%), Gaps = 13/315 (4%)
Query: 55 YIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEK 114
++ G + + + ++ + G+L ++++F+ + N +GTI+ L G Y +
Sbjct: 148 HVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYRE 207
Query: 115 TLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGF--DSFDDVGDAL 172
++++M T+ ++R+ + L +G+++H V+K G D+F V AL
Sbjct: 208 AFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTF--VSCAL 265
Query: 173 VEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEG 228
++ Y KC G E+ + F + + WNS+++ +G SE++ L+ MR G
Sbjct: 266 IDMYSKC-GDIEDA----RCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320
Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
D T ++R L LE + H + + F D+ NTAL+ +YSK +EDA+
Sbjct: 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR 380
Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
+FD+M K+ + WN +I+ Y G +++E+ M+ G + T +A +S+
Sbjct: 381 NVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG 440
Query: 349 NIEWGKQMHANVLRN 363
E G ++ ++ N
Sbjct: 441 LSEQGWEIFQSMSEN 455
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.9 bits (149), Expect = 4e-12
Identities = 14/50 (28%), Positives = 29/50 (58%)
Query: 501 KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN 550
D++T+N++I Y K G + KL+ +MK+ ++P++ T+ L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 6e-08
Identities = 33/130 (25%), Positives = 66/130 (50%), Gaps = 3/130 (2%)
Query: 474 TAIFISYAKCGCIEMAGELFDEEKID--SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ 531
T + + AK G ++ E+F E ++ T+ ++I A+ G ++ F Y M+
Sbjct: 476 TTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRS 535
Query: 532 SDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMK-ESYGYEPSQEHYASMVNLLGRAGHM 590
+V+PD + F L++AC +G V+ + EMK E++ +P +++ AG +
Sbjct: 536 KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQV 595
Query: 591 DEARELVKDM 600
D A+E+ + +
Sbjct: 596 DRAKEVYQMI 605
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 6e-07
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 502 DIITWNSMISAYAKHGDWSQCFKLYTQMK--QSDVRPDLITFLGLLTACVNAGLVEEGRI 559
D + +N++ISA + G + F + +MK + PD IT L+ AC NAG V+ +
Sbjct: 541 DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600
Query: 560 IFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP---FKPD 605
+++ + E Y + + E Y VN + G D A + DM KPD
Sbjct: 601 VYQMIHE-YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD 648
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 1e-06
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 398 KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVT 437
VV+++++I GY + EAL+LF+EMK G++ + T
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYT 40
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 1e-06
Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 16/125 (12%)
Query: 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEE----- 556
D + ++IS AK G F+++ +M + V ++ TF L+ C AG V +
Sbjct: 471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530
Query: 557 GRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-----PFKPDARVWGP 611
G + K +K P + + ++++ G++G +D A +++ +M P PD G
Sbjct: 531 GIMRSKNVK------PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGA 584
Query: 612 LLSAC 616
L+ AC
Sbjct: 585 LMKAC 589
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 3e-06
Identities = 43/206 (20%), Positives = 86/206 (41%), Gaps = 47/206 (22%)
Query: 419 ALRLFSEMKLEG--VEVDFVTIINILPACVNIG----ALEHVKYLHGYSMKLGLNSLSSV 472
A + +EMK E ++ D +T+ ++ AC N G A E + +H Y++K
Sbjct: 561 AFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK--------- 611
Query: 473 NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQS 532
G E+ + +++ ++ GDW +Y MK+
Sbjct: 612 -----------GTPEV-----------------YTIAVNSCSQKGDWDFALSIYDDMKKK 643
Query: 533 DVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE 592
V+PD + F L+ +AG +++ I ++ ++ G + Y+S++ A + +
Sbjct: 644 GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ-GIKLGTVSYSSLMGACSNAKNWKK 702
Query: 593 AREL---VKDMPFKPDARVWGPLLSA 615
A EL +K + +P L++A
Sbjct: 703 ALELYEDIKSIKLRPTVSTMNALITA 728
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 4e-06
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD 537
+T+N++I K G + +L+ +MK+ + PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 2e-05
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDV 534
+T+NS+IS Y K G + +L+ +MK+ V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 2e-05
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 503 IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP 536
+ T+N+++ A AK GD + +MK S ++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 7e-05
Identities = 42/177 (23%), Positives = 80/177 (45%), Gaps = 12/177 (6%)
Query: 463 KLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEK-IDSKDIITWNSMISAYAKHGDWSQ 521
K GL + + A F + C E F K I + + T+N ++S A D
Sbjct: 398 KRGLLDMDKIYHAKF--FKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDG 455
Query: 522 CFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMV 581
++ ++++ ++ D + L++ C +G V+ +F EM + G E + + +++
Sbjct: 456 ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM-VNAGVEANVHTFGALI 514
Query: 582 NLLGRAGHMDE---ARELVKDMPFKPDARVWGPLLSACKMHSETE-----LAELTAE 630
+ RAG + + A +++ KPD V+ L+SAC + LAE+ AE
Sbjct: 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAE 571
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGF 330
V +N +IS Y ++G +E+LEL M G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGV 431
V+++S+I GY + EAL LF EMK +GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 9e-04
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVD 434
V+++++I G + EAL LF EMK G+E D
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 53/271 (19%), Positives = 114/271 (42%), Gaps = 18/271 (6%)
Query: 189 MIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSG--TLINLLRSTVEL 246
M + K + +N+LIS Q+G +++F++ M+ E D T+ L+++
Sbjct: 533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA 592
Query: 247 KSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK----DRVVW 302
++ + V+ + + V T ++ S+ + A ++D M K D V +
Sbjct: 593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFF 652
Query: 303 NIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSI----STMKNIEWGKQMHA 358
+ ++ +G ++ E+L + G + + SS+ S KN + +++
Sbjct: 653 SALVDVAGHAGDLDKAFEILQDARKQGIK----LGTVSYSSLMGACSNAKNWKKALELYE 708
Query: 359 NVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV----VSWSSMIKGYVTHD 414
++ VS N+LI CE L A ++ +K + +++S ++ D
Sbjct: 709 DIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKD 768
Query: 415 QSLEALRLFSEMKLEGVEVDFVTIINILPAC 445
+ L L S+ K +G++ + V I C
Sbjct: 769 DADVGLDLLSQAKEDGIKPNLVMCRCITGLC 799
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 0.002
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 297 KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFT 336
D V +N +I Y + G +E+L+L M + G + +++T
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYT 40
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 35.8 bits (84), Expect = 0.003
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 373 NSLIDMYCECEDLNCARKIFDSVKTK----TVVSWSSMIKGY 410
N+LID YC+ + A K+F+ +K + V ++S +I G
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.003
Identities = 57/255 (22%), Positives = 117/255 (45%), Gaps = 18/255 (7%)
Query: 298 DRVVWNIMISAYYQSGFPKESLELLMCMVRSG--FRADLFTAIAAVSSISTMKNIEWGKQ 355
DRVV+N +ISA QSG + ++L M D T A + + + ++ K+
Sbjct: 541 DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600
Query: 356 MHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV----VSWSSMIKGYV 411
++ + V+ ++ + D + A I+D +K K V V +S+++
Sbjct: 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVD-VA 659
Query: 412 THDQSL-EALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGY----SMKLGL 466
H L +A + + + +G+++ V+ +++ AC N + K L Y S+KL
Sbjct: 660 GHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWK--KALELYEDIKSIKL-R 716
Query: 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDS--KDIITWNSMISAYAKHGDWSQCFK 524
++S++N A+ + + + A E+ E K + IT++ ++ A + D
Sbjct: 717 PTVSTMN-ALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLD 775
Query: 525 LYTQMKQSDVRPDLI 539
L +Q K+ ++P+L+
Sbjct: 776 LLSQAKEDGIKPNLV 790
|
Length = 1060 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 727 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.89 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.86 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.85 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.83 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.83 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.82 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.81 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.79 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.78 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.78 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.78 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.77 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.76 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.75 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.72 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.7 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.7 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.66 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.66 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.65 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.62 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.6 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.58 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.55 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.54 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.51 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.48 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.46 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.46 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.46 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.46 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.45 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.44 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.43 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.42 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.42 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.37 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.37 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.37 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.36 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.36 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.33 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.31 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.3 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.29 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.28 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.25 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.24 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.22 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.22 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.21 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.2 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.18 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.18 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.17 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.16 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.15 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.14 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.11 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.1 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.09 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.08 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.08 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.07 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.02 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.0 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.0 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.98 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.97 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.96 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.96 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.95 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.93 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.86 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.85 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.84 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.83 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.82 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.82 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.82 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.81 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.71 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.7 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.65 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.64 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.62 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.61 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.6 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.6 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.58 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.58 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.56 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.55 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.55 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.53 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.52 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.52 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.5 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.49 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.47 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.46 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.44 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.4 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.39 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.36 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.35 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.34 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.33 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.28 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.26 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.26 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.25 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.24 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.24 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.21 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.2 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.16 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.15 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.14 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.12 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.08 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.07 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.07 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.04 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.99 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.99 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.98 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.87 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.85 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.84 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.81 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.81 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.8 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.73 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.73 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.72 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.7 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.69 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.69 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.68 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.67 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.66 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.63 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.62 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.62 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.59 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.55 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.54 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.54 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.51 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.46 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.44 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.43 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.4 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.4 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.4 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.38 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.37 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.26 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.23 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.22 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.22 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.2 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.2 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.17 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.14 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.13 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.12 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.12 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.12 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.1 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.1 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.09 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.07 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.06 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.05 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.02 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.0 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.97 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.97 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.92 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.87 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.87 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.82 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.78 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.77 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.76 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.75 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.74 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.72 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.71 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.71 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.7 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.61 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.59 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.57 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.52 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.47 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.45 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.38 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.36 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.33 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.21 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.14 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.09 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.08 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.83 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.81 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.73 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.64 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.57 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.5 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.49 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.45 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.44 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.35 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.31 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.3 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.13 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.13 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.12 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.11 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.07 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.99 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.94 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 94.92 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.82 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 94.45 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.36 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.28 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.25 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.25 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.02 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.98 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 93.86 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.85 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.8 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.75 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.71 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.68 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.67 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.63 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.62 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.57 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.55 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.5 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.46 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.36 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.35 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 92.95 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.9 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 92.9 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.89 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 92.72 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.48 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 92.32 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 91.86 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.8 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.78 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 91.43 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 91.31 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 91.25 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 91.08 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.74 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.64 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 90.43 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 90.41 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 90.41 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.85 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.65 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 89.62 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 89.57 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 89.32 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 89.26 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 89.0 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.39 | |
| PRK09687 | 280 | putative lyase; Provisional | 88.07 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 87.86 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 87.7 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 87.35 | |
| PRK09687 | 280 | putative lyase; Provisional | 87.29 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 87.27 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 87.08 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 87.08 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 86.5 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 86.22 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 86.2 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 86.18 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 85.91 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 85.88 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 85.13 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 84.87 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 84.83 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 84.77 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 84.77 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 84.66 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 84.24 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 84.16 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 83.77 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 83.67 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 83.35 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 83.31 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 83.22 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 82.95 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 82.69 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 82.35 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 81.98 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 81.55 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 81.16 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 80.42 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 80.37 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 80.1 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 80.04 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-110 Score=949.91 Aligned_cols=695 Identities=33% Similarity=0.596 Sum_probs=677.6
Q ss_pred ccccccCCCCCCCchhhHHHHHHhhcCCcch---HHHHHHHHHhhcCCCchhhHHHHHHHHHccCChhHHHHHHhcCCCC
Q 004856 18 FLRFPANQTRPHMTATHSFSLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94 (727)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~ 94 (727)
|..|+..+..| +..+|..++++|.+.+.+ .++|..+ ++.|..++..++|+|+++|+++|+++.|+++|++|++|
T Consensus 74 ~~~m~~~g~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~ 150 (857)
T PLN03077 74 LESMQELRVPV--DEDAYVALFRLCEWKRAVEEGSRVCSRA-LSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPER 150 (857)
T ss_pred HHHHHhcCCCC--ChhHHHHHHHHHhhCCCHHHHHHHHHHH-HHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCC
Confidence 44455556666 356788999999888776 8899999 89999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHHcCCCchhHHHHHHH
Q 004856 95 NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVE 174 (727)
Q Consensus 95 ~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 174 (727)
|+++||++|++|++.|++++|+++|++|...|+.||.+||+++|++|+..+++..+.++|..+++.|+.||..++|+||+
T Consensus 151 d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~ 230 (857)
T PLN03077 151 DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALIT 230 (857)
T ss_pred CeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCChhhhhhh-ccCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHH
Q 004856 175 FYIKCDGGFENEKGMI-QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGR 253 (727)
Q Consensus 175 ~y~~~~~g~~~~a~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 253 (727)
+|+++ |++++|.++ ++|+.+|+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.
T Consensus 231 ~y~k~--g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~ 308 (857)
T PLN03077 231 MYVKC--GDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGR 308 (857)
T ss_pred HHhcC--CCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH
Confidence 99999 999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCCCCeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCC
Q 004856 254 IVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333 (727)
Q Consensus 254 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 333 (727)
+++..+.+.|+.||..+||+|+.+|+++|++++|.++|++|..+|.++||++|.+|++.|++++|+++|++|.+.|+.||
T Consensus 309 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd 388 (857)
T PLN03077 309 EMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388 (857)
T ss_pred HHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhc
Q 004856 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTH 413 (727)
Q Consensus 334 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 413 (727)
..||+.++.+|++.|+++.|.++|+.+.+.|+.|+..++++|+++|+++|++++|.++|++|.++|+++||+||.+|+++
T Consensus 389 ~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~ 468 (857)
T PLN03077 389 EITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLN 468 (857)
T ss_pred ceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHH
Q 004856 414 DQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELF 493 (727)
Q Consensus 414 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 493 (727)
|+.++|+.+|++|.. ++.||..||+.+|.+|++.|.++.+.+++..+.+.|+.++..++++|+++|+++|++++|.++|
T Consensus 469 g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f 547 (857)
T PLN03077 469 NRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF 547 (857)
T ss_pred CCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHH
Confidence 999999999999986 5999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC
Q 004856 494 DEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS 573 (727)
Q Consensus 494 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 573 (727)
+++ .||+.+||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+
T Consensus 548 ~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 548 NSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred Hhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc
Confidence 998 68999999999999999999999999999999999999999999999999999999999999999977799999
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhc
Q 004856 574 QEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAA 653 (727)
Q Consensus 574 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 653 (727)
..+|++|+++|++.|++++|.+++++|+++||..+|++|+.+|..+|+.+.++.+.+++++++|++...|..|+++|...
T Consensus 625 ~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~ 704 (857)
T PLN03077 625 LKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADA 704 (857)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCcChHHHHHHHHHH-HHHHHcccccCc
Q 004856 654 GKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL-ELEIMEGRRESS 721 (727)
Q Consensus 654 g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~f~~~d~~hp~~~~i~~~l~~l-~~~~~~~~~~~~ 721 (727)
|+|++|.++++.|+++|++|+||+|||++++.+|.|++||++||+..+||..|+.+ .+|+..||.+..
T Consensus 705 g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~ 773 (857)
T PLN03077 705 GKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSE 773 (857)
T ss_pred CChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999 999999997653
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-83 Score=712.32 Aligned_cols=526 Identities=33% Similarity=0.554 Sum_probs=516.3
Q ss_pred CCCCcccHHHHHHHHHhCCCchhHHHHHHHHHhCC-CCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHh
Q 004856 194 FKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG-AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNT 272 (727)
Q Consensus 194 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 272 (727)
..++.++|+.+|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.+.+++..|.+.|+.||..++|
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34677899999999999999999999999999865 78999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCChHHHHHHHhcCCCCCeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHH
Q 004856 273 ALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEW 352 (727)
Q Consensus 273 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 352 (727)
.|+++|+++|+++.|.++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|+.+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 004856 353 GKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVE 432 (727)
Q Consensus 353 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 432 (727)
++++|..+.+.|+.+|..++++|+++|+++|++++|.++|+.|..+|+++||+||.+|++.|+.++|+++|++|.+.|+.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHH
Q 004856 433 VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512 (727)
Q Consensus 433 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~ 512 (727)
||..||+.++.+|++.|.+++|.+++..+.+.|+.|+..++++|+++|+++|++++|.++|++|. .||+.+||+||.+
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~--~~d~~t~n~lI~~ 400 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP--RKNLISWNALIAG 400 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC--CCCeeeHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998 7999999999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH
Q 004856 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE 592 (727)
Q Consensus 513 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 592 (727)
|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+.+|+.|+..+|++|+++|++.|++++
T Consensus 401 y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~e 480 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE 480 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999877999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 004856 593 ARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLK 672 (727)
Q Consensus 593 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 672 (727)
|.+++++|+..|+..+|++|+.+|..+|+++.|+.+++++++++|++..+|..|+++|.+.|+|++|.++++.|+++|++
T Consensus 481 A~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 481 AYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeEEEECCEEEEEEeCCCCCcChHHHHHHHHHH-HHHHHcccccCc
Q 004856 673 KTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL-ELEIMEGRRESS 721 (727)
Q Consensus 673 ~~~~~~~~~~~~~~~~f~~~d~~hp~~~~i~~~l~~l-~~~~~~~~~~~~ 721 (727)
+.||++|+++++.+|.|++||++||+..+||..|..+ .+|++.||.+..
T Consensus 561 k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~ 610 (697)
T PLN03081 561 MHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEE 610 (697)
T ss_pred cCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 9999999999999999999999999999999999999 999999997754
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-83 Score=729.36 Aligned_cols=576 Identities=25% Similarity=0.393 Sum_probs=557.9
Q ss_pred CCCCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHHcCCCchhHHHH
Q 004856 92 TSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDA 171 (727)
Q Consensus 92 ~~~~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 171 (727)
..++..++|.+|++|++.|++++|+.+|++|.+.|+.|+..||..++++|.+.+.+..|.++|..+.+.+..++..++|+
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 46788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccCCCChhhhhhh-ccCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChh
Q 004856 172 LVEFYIKCDGGFENEKGMI-QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLE 250 (727)
Q Consensus 172 li~~y~~~~~g~~~~a~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 250 (727)
|+++|+++ |+++.|.++ ++|++||+++||++|.+|++.|++++|+++|++|...|+.||..||++++++|+..++++
T Consensus 127 li~~~~~~--g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~ 204 (857)
T PLN03077 127 MLSMFVRF--GELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLA 204 (857)
T ss_pred HHHHHHhC--CChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchh
Confidence 99999999 999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCCCCeehHHHHHHHHHhcCCchHHHHHHHHHHHcCC
Q 004856 251 LGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330 (727)
Q Consensus 251 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 330 (727)
.+.+++..+++.|+.||..++|+||.+|+++|++++|.++|++|+++|.++||+||.+|++.|++++|+++|++|...|+
T Consensus 205 ~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~ 284 (857)
T PLN03077 205 RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSV 284 (857)
T ss_pred hHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHH
Q 004856 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGY 410 (727)
Q Consensus 331 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 410 (727)
.||..||+.++.+|++.|+++.|+++|..+.+.|+.||..+||+|+.+|+++|++++|.++|++|..+|+++||+||.+|
T Consensus 285 ~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~ 364 (857)
T PLN03077 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGY 364 (857)
T ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHH
Q 004856 411 VTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAG 490 (727)
Q Consensus 411 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 490 (727)
++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.++..++++|+++|+++|++++|.
T Consensus 365 ~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 444 (857)
T PLN03077 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444 (857)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC
Q 004856 491 ELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGY 570 (727)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 570 (727)
++|++|. .+|+++||++|.+|++.|+.++|+++|++|.. +++||..||+.++.+|++.|.++.+.+++..+.+. |+
T Consensus 445 ~vf~~m~--~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~ 520 (857)
T PLN03077 445 EVFHNIP--EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GI 520 (857)
T ss_pred HHHHhCC--CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CC
Confidence 9999999 79999999999999999999999999999986 59999999999999999999999999999999988 99
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccC-CCCcchHHHHHHH
Q 004856 571 EPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISME-PENAGNYVLLSNI 649 (727)
Q Consensus 571 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~ 649 (727)
.++..++++|+++|+++|++++|.++|+++ .||..+|++++.+|.++|+.++|.++|++|.+.+ .+|..+|..++.+
T Consensus 521 ~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a 598 (857)
T PLN03077 521 GFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA 598 (857)
T ss_pred CccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Confidence 999999999999999999999999999998 7899999999999999999999999999998743 2378899999999
Q ss_pred HHhcCChhHHHHHHHHHH-hCCCccCC
Q 004856 650 YAAAGKWNGVAKMRTFLR-DRGLKKTP 675 (727)
Q Consensus 650 ~~~~g~~~~a~~~~~~m~-~~~~~~~~ 675 (727)
|.+.|++++|.++|+.|. +.|+.++.
T Consensus 599 ~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 599 CSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred HhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 999999999999999998 56876653
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-71 Score=616.45 Aligned_cols=475 Identities=23% Similarity=0.399 Sum_probs=462.0
Q ss_pred CCCcchHHHHHHHHHcCCCchHHHHHHHHHHhCC-CCCCcccHHHHHHHhhccCChhHHHHHHHHHHHHcCCCchhHHHH
Q 004856 93 SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQS-MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDA 171 (727)
Q Consensus 93 ~~~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 171 (727)
.++.++||.+|.+|++.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.|.++|..+.+.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4677899999999999999999999999999864 789999999999999999999999999999999999999999999
Q ss_pred HHHhhhccCCCChhhhhhh-ccCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChh
Q 004856 172 LVEFYIKCDGGFENEKGMI-QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLE 250 (727)
Q Consensus 172 li~~y~~~~~g~~~~a~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 250 (727)
|+++|+++ |++++|.++ ++|+.||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+
T Consensus 164 Li~~y~k~--g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 164 VLLMHVKC--GMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHHHhcC--CCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 99999999 999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCCCCeehHHHHHHHHHhcCCchHHHHHHHHHHHcCC
Q 004856 251 LGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330 (727)
Q Consensus 251 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 330 (727)
.+++++..+.+.|+.+|..++|+||++|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.|+
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHH
Q 004856 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGY 410 (727)
Q Consensus 331 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 410 (727)
.||..||++++.+|++.|+++.|+++|..|.+.|+.||..++++|+++|+++|++++|.++|++|.++|+++||+||.+|
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y 401 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGY 401 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHH-hCCCchHhHHHHHHHHHHhcCCHHHH
Q 004856 411 VTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK-LGLNSLSSVNTAIFISYAKCGCIEMA 489 (727)
Q Consensus 411 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A 489 (727)
+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|++++++|++.|++++|
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999986 69999999999999999999999999
Q ss_pred HHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc
Q 004856 490 GELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESY 568 (727)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 568 (727)
.+++++++. .|+..+|++|+.+|+.+|+++.|..+++++.+ +.| +..+|+.+++.|++.|++++|.++++.|.++
T Consensus 482 ~~~~~~~~~-~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~- 557 (697)
T PLN03081 482 YAMIRRAPF-KPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK- 557 (697)
T ss_pred HHHHHHCCC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-
Confidence 999999875 79999999999999999999999999999976 567 4679999999999999999999999999988
Q ss_pred CCCCC
Q 004856 569 GYEPS 573 (727)
Q Consensus 569 ~~~p~ 573 (727)
|+++.
T Consensus 558 g~~k~ 562 (697)
T PLN03081 558 GLSMH 562 (697)
T ss_pred CCccC
Confidence 87644
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-70 Score=608.51 Aligned_cols=523 Identities=15% Similarity=0.140 Sum_probs=479.3
Q ss_pred CCchhhHHHHHHHHHccCChhHHHHHHhcCCCCCcc-----hHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHH
Q 004856 62 HQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSL-----LYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPF 136 (727)
Q Consensus 62 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~-----~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 136 (727)
.++...|..+++.|+++|++++|+++|++|+.++.+ .++.++.+|.+.|.+++|+.+|+.|.. ||..||+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 567888999999999999999999999999976554 456677889999999999999999975 99999999
Q ss_pred HHHHhhccCChhHHHHHHHHHHHHcCCCchhHHHHHHHhhhccCCCChhhhhhh-ccCC----CCCcccHHHHHHHHHhC
Q 004856 137 VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI-QRKF----KDLKSRWNSLISLAVQN 211 (727)
Q Consensus 137 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~~~g~~~~a~~~-~~~~----~~~~~~~~~li~~~~~~ 211 (727)
+|++|++.|+++.|.++|+.|.+.|+.||..+||+||++|+++ |++++|.++ ++|. .||.++||+||.+|++.
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~--G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKS--GKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC--cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999 999999999 8886 68999999999999999
Q ss_pred CCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHH--hcCCCChhHHhHHHHHhhcCCChHHHHH
Q 004856 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVV--SDFCKDLSVNTALLSMYSKLASLEDAKM 289 (727)
Q Consensus 212 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~ 289 (727)
|++++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+.|.+ .|+.||..+|++||.+|+++|++++|.+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 5789999999999999999999999999
Q ss_pred HHhcCCC----CCeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCC
Q 004856 290 LFDKMSD----KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS 365 (727)
Q Consensus 290 ~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 365 (727)
+|++|.+ ++..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.|+
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 9999976 467999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhcCC----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004856 366 DYQVSVHNSLIDMYCECEDLNCARKIFDSVK----TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINI 441 (727)
Q Consensus 366 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 441 (727)
.||..+|++||.+|+++|++++|.++|++|. .||..+||.||.+|++.|++++|+++|++|...|+.||..||+.+
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 9999999999999999999999999999995 579999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCC----CCCHHHHHHHHHHHHHcC
Q 004856 442 LPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID----SKDIITWNSMISAYAKHG 517 (727)
Q Consensus 442 l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~li~~~~~~g 517 (727)
+.+|++.|+++.|.+++..|.+.|+.|+..+|++++.++.+ ++++|..+.+.+... ..+...|
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~f~~g~~~~~n~w----------- 827 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVSFDSGRPQIENKW----------- 827 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhhhhccccccccch-----------
Confidence 99999999999999999999999999999999999976432 345554443322210 2222333
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 004856 518 DWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELV 597 (727)
Q Consensus 518 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 597 (727)
.++|+.+|++|++.|+.||..||+.++.+++..+..+.+..+++.|... +..|+..+|++||+++++. .++|..++
T Consensus 828 -~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~ 903 (1060)
T PLN03218 828 -TSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLL 903 (1060)
T ss_pred -HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHH
Confidence 4569999999999999999999999998888889999999999888766 7888999999999998432 47899999
Q ss_pred HhC---CCCCCHh
Q 004856 598 KDM---PFKPDAR 607 (727)
Q Consensus 598 ~~~---~~~p~~~ 607 (727)
++| ++.|+..
T Consensus 904 ~em~~~Gi~p~~~ 916 (1060)
T PLN03218 904 EEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHcCCCCCcc
Confidence 999 6777664
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-65 Score=567.39 Aligned_cols=505 Identities=16% Similarity=0.152 Sum_probs=407.6
Q ss_pred CCCCcccHHHHHHHhhccCChhHHHHHHHHHHHHcC-CCchhHHHHHHHhhhccCCCChhhhhhh-ccCCCCCcccHHHH
Q 004856 127 MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGF-DSFDDVGDALVEFYIKCDGGFENEKGMI-QRKFKDLKSRWNSL 204 (727)
Q Consensus 127 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~y~~~~~g~~~~a~~~-~~~~~~~~~~~~~l 204 (727)
..++...|..++..|++.|+++.|.++++.|.+.|+ +++..+++.++..|.+. |.+++|..+ ..|+.||..+||.+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~--g~~~eAl~lf~~M~~pd~~Tyn~L 443 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQ--RAVKEAFRFAKLIRNPTLSTFNML 443 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHC--CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 445666788888888888888888888888888775 56667777788888887 888888888 88888888888888
Q ss_pred HHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCCh
Q 004856 205 ISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASL 284 (727)
Q Consensus 205 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 284 (727)
|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|+++.|.++++.|.+.|+.||..+|+.||.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhcCCC----CCeehHHHHHHHHHhcCCchHHHHHHHHHHH--cCCCCChhhHHHHHHHhhcCCChHHHHHHHH
Q 004856 285 EDAKMLFDKMSD----KDRVVWNIMISAYYQSGFPKESLELLMCMVR--SGFRADLFTAIAAVSSISTMKNIEWGKQMHA 358 (727)
Q Consensus 285 ~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 358 (727)
++|.++|++|.+ ||..+||.||.+|++.|++++|.++|++|.. .|+.||..||++++.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888888888853 6788888888888888888888888888865 5678888888888888888888888888888
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 004856 359 NVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT----KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVD 434 (727)
Q Consensus 359 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 434 (727)
.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 888888888888888888888888888888888888864 4777888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccC--CCCCHHHHHHHHHH
Q 004856 435 FVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI--DSKDIITWNSMISA 512 (727)
Q Consensus 435 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~li~~ 512 (727)
..+|+.+|.+|++.|++++|.++|+.|.+.|+.|+..+|++||.+|++.|++++|.++|++|.. ..||..+|++++.+
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a 763 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888888888887653 36888888888888
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHhHHhcC
Q 004856 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN----A-------------------GLVEEGRIIFKEMKESYG 569 (727)
Q Consensus 513 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~-------------------g~~~~a~~~~~~~~~~~~ 569 (727)
|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ . +..++|..+|++|.+. |
T Consensus 764 ~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~-G 842 (1060)
T PLN03218 764 SERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA-G 842 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC-C
Confidence 88888888888888888888888888888888765432 1 1235677778888777 8
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC---CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 004856 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDMP---FKPDARVWGPLLSACKMHSETELAELTAEKLISME 636 (727)
Q Consensus 570 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 636 (727)
+.||..+|+.++.++++.+..+.+..+++.|+ ..|+..+|++++.++.+. .++|..++++|.+.+
T Consensus 843 i~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 843 TLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred CCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 88888888888877777777777777777773 445667788888776332 356788888777643
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=328.34 Aligned_cols=582 Identities=13% Similarity=0.020 Sum_probs=398.2
Q ss_pred HHHHHccCChhHHHHHHhcCCC---CCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCChh
Q 004856 72 IDSYANLGLLSLSQQVFNSITS---PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFI 148 (727)
Q Consensus 72 i~~~~~~g~~~~A~~~f~~~~~---~~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 148 (727)
...+...|+++.|...|+...+ .+...+..+...+.+.|++++|+..++++.... +.+...+..+...+...|+++
T Consensus 302 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 380 (899)
T TIGR02917 302 GASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFE 380 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHH
Confidence 3444555666666666654432 233445556666666677777777666665432 223445566666666677777
Q ss_pred HHHHHHHHHHHHcCCCchhHHHHHHHhhhccCCCChhhhhhh-ccCCC---CCcccHHHHHHHHHhCCCchhHHHHHHHH
Q 004856 149 SGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI-QRKFK---DLKSRWNSLISLAVQNGKSEKSFELFKLM 224 (727)
Q Consensus 149 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~~~g~~~~a~~~-~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 224 (727)
.|...++.+.+.. +.+...+..+...|... |+.++|... ..... .+...+..++..+.+.|++++|+++++.+
T Consensus 381 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 457 (899)
T TIGR02917 381 KAAEYLAKATELD-PENAAARTQLGISKLSQ--GDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKL 457 (899)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHhC--CChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 7777776666543 23445555666666666 677666665 43322 22334555666777777777777777777
Q ss_pred HhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCC---CCeeh
Q 004856 225 RMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD---KDRVV 301 (727)
Q Consensus 225 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~ 301 (727)
... .+++..++..+...+...|+.++|.+.+..+++.. +.+...+..+...+...|++++|...|+++.+ .+..+
T Consensus 458 ~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 535 (899)
T TIGR02917 458 EKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRA 535 (899)
T ss_pred HHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHH
Confidence 653 34455677777777777777777777777777654 33455566677777777777777777777643 25566
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 004856 302 WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCE 381 (727)
Q Consensus 302 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 381 (727)
+..+...+.+.|+.++|...|+++...+ +.+...+..+...+...|++++|..+++.+.+.. +.+..++..+...|.+
T Consensus 536 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 613 (899)
T TIGR02917 536 ILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLA 613 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 7777777777777778877777776553 3345556667777777788888877777776543 4456677777777888
Q ss_pred cCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHH
Q 004856 382 CEDLNCARKIFDSVKT---KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLH 458 (727)
Q Consensus 382 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 458 (727)
.|++++|...|+.+.+ .+...|..+...|.+.|++++|...|+++.... +.+..++..+...+...|++++|..++
T Consensus 614 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 692 (899)
T TIGR02917 614 AGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIA 692 (899)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888877776643 245667777777777888888888887777642 234566677777777788888888887
Q ss_pred HHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh
Q 004856 459 GYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL 538 (727)
Q Consensus 459 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 538 (727)
+.+.+.. +.+...+..+...+.+.|++++|...|+.+....|+...+..++.++.+.|++++|.+.++++.+.. +.+.
T Consensus 693 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~ 770 (899)
T TIGR02917 693 KSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDA 770 (899)
T ss_pred HHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 7777665 4456666777777778888888888888765545666667777777888888888888888877643 3456
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHH
Q 004856 539 ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSAC 616 (727)
Q Consensus 539 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 616 (727)
..+..+...|...|++++|..+|+++.+. .+++..++..+...+.+.|+ .+|+++++++ ...| +...+..+...+
T Consensus 771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (899)
T TIGR02917 771 VLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLL 847 (899)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 67777777788888888888888887754 34456677777888888887 7788877776 3344 334566666667
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 004856 617 KMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLR 667 (727)
Q Consensus 617 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 667 (727)
...|++++|...++++++.+|.++.++..++.++.+.|++++|.+++++|.
T Consensus 848 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 848 VEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 788888888888888888888788888888888888888888888887764
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-32 Score=317.82 Aligned_cols=595 Identities=12% Similarity=0.045 Sum_probs=346.3
Q ss_pred CchhhHHHHHHHHHccCChhHHHHHHhcCCC---CCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCC------------
Q 004856 63 QNLILSSNLIDSYANLGLLSLSQQVFNSITS---PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSM------------ 127 (727)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~------------ 127 (727)
.+...+..+...+...|+++.|...|++... .+..+|..++..+...|++++|...++.+.+...
T Consensus 191 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 270 (899)
T TIGR02917 191 GNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALV 270 (899)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 3444555555555555555555555554331 2334455555555555555555555554443211
Q ss_pred --------------------CCCcc-cHHHHHHHhhccCChhHHHHHHHHHHHHcCCCchhHHHHHHHhhhccCCCChhh
Q 004856 128 --------------------YPAED-TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENE 186 (727)
Q Consensus 128 --------------------~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~~~g~~~~ 186 (727)
.|+.. .+..+...+...|+++.|...++.+++.. +.+...+..+...+.+. |++++
T Consensus 271 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~--g~~~~ 347 (899)
T TIGR02917 271 DFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRL--GRVDE 347 (899)
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHC--CCHHH
Confidence 12211 12222233445666666666666666543 23445566666777777 78777
Q ss_pred hhhh-ccCC---CCCcccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHHh
Q 004856 187 KGMI-QRKF---KDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVS 262 (727)
Q Consensus 187 a~~~-~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 262 (727)
|... ..+. ..+...|+.+...+.+.|++++|.+.|+++.+.. +.+...+..+...+...|+.++|...+..+.+.
T Consensus 348 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 426 (899)
T TIGR02917 348 AIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQL 426 (899)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhh
Confidence 7776 5443 2345567777778888888888888888776643 223344555555666666666666666666654
Q ss_pred cCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCC---CCeehHHHHHHHHHhcCCchHHHHHHHHHHHcC----------
Q 004856 263 DFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD---KDRVVWNIMISAYYQSGFPKESLELLMCMVRSG---------- 329 (727)
Q Consensus 263 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------- 329 (727)
... .......++..|.+.|++++|..+++.+.. .+..+|+.+...+...|++++|.+.|+++.+..
T Consensus 427 ~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 505 (899)
T TIGR02917 427 DPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANL 505 (899)
T ss_pred CCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 421 122333344445555555555555554432 133445555555555555555555555544321
Q ss_pred -----------------------CCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHH
Q 004856 330 -----------------------FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLN 386 (727)
Q Consensus 330 -----------------------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 386 (727)
.+.+..++..+...+...|+.++|...+..+.+.+ +.+...+..++..|.+.|+++
T Consensus 506 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 584 (899)
T TIGR02917 506 ARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLK 584 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHH
Confidence 11233334444444444455555555554444432 223334445555555555555
Q ss_pred HHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 004856 387 CARKIFDSVKT---KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK 463 (727)
Q Consensus 387 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 463 (727)
+|..+++.+.+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+..++...|++++|..++..+.+
T Consensus 585 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 663 (899)
T TIGR02917 585 KALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALE 663 (899)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555555432 234456666666666666666666666665432 22334455555556666666666666666555
Q ss_pred hCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHH
Q 004856 464 LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFL 542 (727)
Q Consensus 464 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 542 (727)
.. +.+...+..++..+...|++++|..+++.+....| +...+..+...+...|++++|++.|+++... .|+..++.
T Consensus 664 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~ 740 (899)
T TIGR02917 664 LK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAI 740 (899)
T ss_pred cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHH
Confidence 43 33455556666666666666666666666543322 4455666666677777777777777777663 35556666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHhhHHHHHHHHHHcC
Q 004856 543 GLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFK-PDARVWGPLLSACKMHS 620 (727)
Q Consensus 543 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g 620 (727)
.+..++.+.|++++|.+.++.+.+. .+.+...+..+...|.+.|++++|.+.|+++ ... ++...++.+...+...|
T Consensus 741 ~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 818 (899)
T TIGR02917 741 KLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELK 818 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 6777777777777777777777653 3445667777777777788888888888776 223 35567777777777777
Q ss_pred CHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004856 621 ETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 621 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 670 (727)
+ ++|+..++++++..|+++..+..++.++...|++++|.++++++.+.+
T Consensus 819 ~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 819 D-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred c-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 7 778888888888888777777788888888888888888888877664
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-24 Score=249.42 Aligned_cols=588 Identities=12% Similarity=0.022 Sum_probs=433.9
Q ss_pred CCchhhHHHHHHHHHccCChhHHHHHHhcCCC--CCcchH-----------------HHHHHHHHcCCCchHHHHHHHHH
Q 004856 62 HQNLILSSNLIDSYANLGLLSLSQQVFNSITS--PNSLLY-----------------GTILKNLSKFGEYEKTLLVYKQM 122 (727)
Q Consensus 62 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~-----------------n~li~~~~~~g~~~~a~~~~~~m 122 (727)
+.|+.+...+...+.+.|+.++|.+.+++..+ |+...+ -.+.+.+.+.|++++|+..|++.
T Consensus 59 p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~ 138 (1157)
T PRK11447 59 PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKL 138 (1157)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 44678888899999999999999999998764 443322 22344688899999999999998
Q ss_pred HhCCCCCCcc-cHHHHHHHhhccCChhHHHHHHHHHHHHcCCCchhHHHHHHHhhhccCCCChhhhhhh-ccCCCCCcc-
Q 004856 123 ALQSMYPAED-TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI-QRKFKDLKS- 199 (727)
Q Consensus 123 ~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~~~g~~~~a~~~-~~~~~~~~~- 199 (727)
...+ +|+.. ............|+.+.|...++.+++.. +.+..++..+-..+... |+.++|... +++......
T Consensus 139 l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~--g~~~eAl~~l~~~~~~~~~~ 214 (1157)
T PRK11447 139 FNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSS--GRRDEGFAVLEQMAKSPAGR 214 (1157)
T ss_pred ccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHhhCCCch
Confidence 8642 33322 11112222335689999999999999875 44567788888889888 999999988 665332111
Q ss_pred -----cH-----------------HHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHH
Q 004856 200 -----RW-----------------NSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHC 257 (727)
Q Consensus 200 -----~~-----------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 257 (727)
.| ...+..+-.......|...+..+......|+... ......+...|++++|...++
T Consensus 215 ~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~ 293 (1157)
T PRK11447 215 DAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQ 293 (1157)
T ss_pred HHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHH
Confidence 11 1111112222223445555555443322333221 123445667899999999999
Q ss_pred HHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCC--CCe---ehHHHH------------HHHHHhcCCchHHHH
Q 004856 258 VAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD--KDR---VVWNIM------------ISAYYQSGFPKESLE 320 (727)
Q Consensus 258 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~l------------i~~~~~~g~~~~A~~ 320 (727)
.+++.. +.+..++..+...|.+.|++++|+..|++..+ |+. ..|..+ ...+.+.|++++|+.
T Consensus 294 ~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~ 372 (1157)
T PRK11447 294 QAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAER 372 (1157)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 999875 34678889999999999999999999998765 221 123222 345678999999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC-
Q 004856 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKT- 399 (727)
Q Consensus 321 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~- 399 (727)
.|++..... +.+...+..+...+...|++++|++.++.+++.. +.+...+..+...|. .++.++|...++.+....
T Consensus 373 ~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~ 449 (1157)
T PRK11447 373 LYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQR 449 (1157)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHH
Confidence 999998763 2345566778888999999999999999999874 334556677777775 467899999998876432
Q ss_pred -----------hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC
Q 004856 400 -----------VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVD-FVTIINILPACVNIGALEHVKYLHGYSMKLGLN 467 (727)
Q Consensus 400 -----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~ 467 (727)
...+..+...+...|++++|++.|++..+. .|+ ...+..+...+.+.|++++|...++.+.+.. +
T Consensus 450 ~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P 526 (1157)
T PRK11447 450 RSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-P 526 (1157)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C
Confidence 123555677888999999999999999885 454 4566778888999999999999999988754 3
Q ss_pred chHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC--CHH---------HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 004856 468 SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK--DII---------TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP 536 (727)
Q Consensus 468 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~---------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 536 (727)
.+...+..+...+...|+.++|...++.+..... +.. .+..+...+...|+.++|+++++. .++
T Consensus 527 ~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~ 601 (1157)
T PRK11447 527 NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPP 601 (1157)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCC
Confidence 3444455555567889999999999998764222 111 123456678899999999999872 244
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHH
Q 004856 537 DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPD-ARVWGPLLS 614 (727)
Q Consensus 537 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~ 614 (727)
+...+..+...+.+.|++++|+..|+.+.+. -+.+...+..++..|...|++++|++.+++. ...|+ ...+..+..
T Consensus 602 ~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~ 679 (1157)
T PRK11447 602 STRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVAL 679 (1157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 6667788899999999999999999999964 2335778899999999999999999999987 34554 445666677
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCCc------chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004856 615 ACKMHSETELAELTAEKLISMEPENA------GNYVLLSNIYAAAGKWNGVAKMRTFLRD 668 (727)
Q Consensus 615 ~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 668 (727)
++...|+.++|.++++++++..|+++ ..+..++.++...|++++|+..+++...
T Consensus 680 ~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 680 AWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 78899999999999999999876544 3566779999999999999999998754
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.9e-24 Score=248.50 Aligned_cols=587 Identities=11% Similarity=0.036 Sum_probs=431.4
Q ss_pred HHHHHHHccCChhHHHHHHhcCC--CC-CcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccH------------
Q 004856 70 NLIDSYANLGLLSLSQQVFNSIT--SP-NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTY------------ 134 (727)
Q Consensus 70 ~li~~~~~~g~~~~A~~~f~~~~--~~-~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~------------ 134 (727)
..++.+-..++.+.|.+.+++.. .| |...+..++..+.+.|+.++|...+++..+. .|+...+
T Consensus 33 ~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~--~P~~~~~~~~~~~~~~~~~ 110 (1157)
T PRK11447 33 EQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQL--APDSNAYRSSRTTMLLSTP 110 (1157)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHhcCC
Confidence 34566778899999999999765 34 5667888899999999999999999999875 3544332
Q ss_pred -----HHHHHHhhccCChhHHHHHHHHHHHHcCCCchhHHHHHHHhhhccCCCChhhhhhh-ccCCC---CCcccHHHHH
Q 004856 135 -----PFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI-QRKFK---DLKSRWNSLI 205 (727)
Q Consensus 135 -----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~~~g~~~~a~~~-~~~~~---~~~~~~~~li 205 (727)
....+.+...|++++|.+.++.+++...+........+....... |+.++|... +++.. .+...+..+.
T Consensus 111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~--g~~~~A~~~L~~ll~~~P~~~~~~~~LA 188 (1157)
T PRK11447 111 EGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLP--AQRPEAINQLQRLNADYPGNTGLRNTLA 188 (1157)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCC--ccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 223446778999999999999998764322221111111222234 888999888 66543 3445678888
Q ss_pred HHHHhCCCchhHHHHHHHHHhCCCC----------------CChh---hHHHHHHHhcccCChhHHHHHHHHHHHhcCCC
Q 004856 206 SLAVQNGKSEKSFELFKLMRMEGAE----------------FDSG---TLINLLRSTVELKSLELGRIVHCVAVVSDFCK 266 (727)
Q Consensus 206 ~~~~~~g~~~~A~~~~~~m~~~g~~----------------p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 266 (727)
..+...|+.++|++.|+++.+.... ++.. .+...+..+-.....+.+...+....+....|
T Consensus 189 ~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp 268 (1157)
T PRK11447 189 LLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADP 268 (1157)
T ss_pred HHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCc
Confidence 8999999999999999998653210 0000 11111222222223445555555544433333
Q ss_pred ChhHHhHHHHHhhcCCChHHHHHHHhcCCC--C-CeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCC-hhhHH----
Q 004856 267 DLSVNTALLSMYSKLASLEDAKMLFDKMSD--K-DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD-LFTAI---- 338 (727)
Q Consensus 267 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~---- 338 (727)
+.. .......+...|++++|+..|++..+ | +...+..+...+.+.|++++|+..|++..+...... ...+.
T Consensus 269 ~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~ 347 (1157)
T PRK11447 269 AFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLK 347 (1157)
T ss_pred chH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHH
Confidence 322 12345667789999999999998755 3 677899999999999999999999999887543221 11111
Q ss_pred --------HHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHH
Q 004856 339 --------AAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK---TVVSWSSMI 407 (727)
Q Consensus 339 --------~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li 407 (727)
.....+.+.|++++|...++.+++.. +.+...+..+...|...|++++|++.|++..+. +...+..+.
T Consensus 348 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~ 426 (1157)
T PRK11447 348 VNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLA 426 (1157)
T ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 12345678999999999999999875 345667788999999999999999999987743 455677777
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHH
Q 004856 408 KGYVTHDQSLEALRLFSEMKLEGVE--------VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479 (727)
Q Consensus 408 ~~~~~~g~~~~A~~~~~~m~~~g~~--------p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 479 (727)
..|. .++.++|+.+++.+...... .....+..+...+...|++++|...++.+.+.. +.+...+..+...
T Consensus 427 ~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~ 504 (1157)
T PRK11447 427 NLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQD 504 (1157)
T ss_pred HHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 7774 46789999998876543110 011234455667888999999999999998875 4456677889999
Q ss_pred HHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChH---------HHHHHHHHHH
Q 004856 480 YAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI---------TFLGLLTACV 549 (727)
Q Consensus 480 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------t~~~ll~~~~ 549 (727)
|.+.|++++|...|+++....| +...+..+...+...++.++|+..++++......++.. .+..+...+.
T Consensus 505 ~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 9999999999999999654445 55556666666778999999999998875433233221 1334567788
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHH
Q 004856 550 NAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAEL 627 (727)
Q Consensus 550 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~ 627 (727)
..|+.++|..+++. .+++...+..+...+.+.|++++|++.+++. ...| +...+..+...+...|+.++|+.
T Consensus 585 ~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 585 DSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred HCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999998871 2455667788999999999999999999988 4556 46688888899999999999999
Q ss_pred HHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004856 628 TAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 628 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 670 (727)
.++++.+..|+++..+..++.++...|++++|.++++++....
T Consensus 659 ~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 659 QLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 9999999999999999999999999999999999999987654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.8e-24 Score=210.53 Aligned_cols=506 Identities=14% Similarity=0.137 Sum_probs=385.7
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCC
Q 004856 203 SLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA 282 (727)
Q Consensus 203 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 282 (727)
.+..-.-+.|++.+|++--...-+++ ..+......+-..+.+..+.+...+--...++.. +.-..+|..+.+.+-..|
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhc
Confidence 33444556677777776554443332 1111222222222333444444333333333322 233567778888888889
Q ss_pred ChHHHHHHHhcCCCC---CeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHH-hhcCCChHHHHHHHH
Q 004856 283 SLEDAKMLFDKMSDK---DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS-ISTMKNIEWGKQMHA 358 (727)
Q Consensus 283 ~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~ 358 (727)
++++|..+++.+.+. .+..|..+..++...|+.+.|.+.|.+..+ +.|+.....+-+.. ....|++++|..-+.
T Consensus 131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 999999988887653 567888899999999999999999988876 46776655443333 345788899998888
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-
Q 004856 359 NVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV---VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVD- 434 (727)
Q Consensus 359 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~- 434 (727)
+.++... .=..+|+.|...+...|++..|+..|++..+-|+ ..|-.|...|...+.+++|+..|.+.... +|+
T Consensus 209 kAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~ 285 (966)
T KOG4626|consen 209 KAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNH 285 (966)
T ss_pred HHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcc
Confidence 8877642 2345688899999999999999999999886554 57888999999999999999999888764 566
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCC-HHHHHHHHHHH
Q 004856 435 FVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD-IITWNSMISAY 513 (727)
Q Consensus 435 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~ 513 (727)
.+.+..+...|-..|.++.|..-+++.++.. +.-...|+.|..++...|++.+|+..+.+.....|+ ..+.+.|...|
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~ 364 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIY 364 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 4567777778889999999999999988865 445678999999999999999999999986544554 56889999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHH
Q 004856 514 AKHGDWSQCFKLYTQMKQSDVRPD-LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGHMD 591 (727)
Q Consensus 514 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~ 591 (727)
...|.+++|..+|....+ +.|. ...++.|...|-++|++++|+..+++.. .++|+ ...|+.+...|-..|+..
T Consensus 365 ~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHH
Confidence 999999999999999988 6786 6689999999999999999999999988 57898 568999999999999999
Q ss_pred HHHHHHHhC-CCCCCHh-hHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHH----
Q 004856 592 EARELVKDM-PFKPDAR-VWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTF---- 665 (727)
Q Consensus 592 ~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~---- 665 (727)
.|.+.+.++ .+.|... ..+.|...+...|+..+|++.|+.+++++|+.+.+|..++.++--..+|.+-.+.+++
T Consensus 440 ~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~si 519 (966)
T KOG4626|consen 440 AAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLVSI 519 (966)
T ss_pred HHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHHHHH
Confidence 999999988 6778654 6777777899999999999999999999999999999999887777777663333222
Q ss_pred HHhCC----Cc------------------------------------cCCceeEEEE----CCEEEEEEeCC-CCCcChH
Q 004856 666 LRDRG----LK------------------------------------KTPGCSWIEI----GKLVHEFWAAD-QSHPQAD 700 (727)
Q Consensus 666 m~~~~----~~------------------------------------~~~~~~~~~~----~~~~~~f~~~d-~~hp~~~ 700 (727)
.++.+ ++ +.|-.+|-.+ +..++|++|.| .+||.+.
T Consensus 520 vrdql~~~rlpsvhP~hsm~ypl~~~~~~aia~k~a~~c~~~~~~~~k~pyth~~~l~~~~~rlrIGYvSsDFgnHp~Sh 599 (966)
T KOG4626|consen 520 VRDQLEKNRLPSVHPHHSMLYPLSHILRKAIAAKHANLCLDKVHVLGKPPYTHPDNLKVKEGRLRIGYVSSDFGNHPTSH 599 (966)
T ss_pred HHHHHhhhcCCccCcccccccccchHHHHHHHHHHhhhhHHHHHhccCCCCCChhhCCCCcCceEEEeecccccCCchHH
Confidence 22221 11 2233344433 33489999999 9999999
Q ss_pred HHHHHHHHH--HHHHHcccccCc
Q 004856 701 AIYTILGIL--ELEIMEGRRESS 721 (727)
Q Consensus 701 ~i~~~l~~l--~~~~~~~~~~~~ 721 (727)
.+......+ ++++..||+-+.
T Consensus 600 lmqsv~gmHdr~kveVfcYals~ 622 (966)
T KOG4626|consen 600 LMQSVPGMHDRSKVEVFCYALSV 622 (966)
T ss_pred HhccCcCcCCccceEEEEEEeec
Confidence 999999888 888888886554
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-20 Score=211.25 Aligned_cols=563 Identities=8% Similarity=-0.004 Sum_probs=350.9
Q ss_pred ccCChhHHHHHHhcCCC--C-CcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCChhHHHHH
Q 004856 77 NLGLLSLSQQVFNSITS--P-NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153 (727)
Q Consensus 77 ~~g~~~~A~~~f~~~~~--~-~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 153 (727)
..|++++|...|+...+ | +..++..+.+.|.+.|++++|+..+++..+. .|+...|..++..+ ++.+.|..+
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHH
Confidence 45999999999997763 4 4567889999999999999999999998874 46555555555333 888899999
Q ss_pred HHHHHHHcCCCchhHHHHHHHh--------hhccCCCChhhhhhhccCCCC--CcccHHHH-HHHHHhCCCchhHHHHHH
Q 004856 154 HAQVVKLGFDSFDDVGDALVEF--------YIKCDGGFENEKGMIQRKFKD--LKSRWNSL-ISLAVQNGKSEKSFELFK 222 (727)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~li~~--------y~~~~~g~~~~a~~~~~~~~~--~~~~~~~l-i~~~~~~g~~~~A~~~~~ 222 (727)
++.+.+.... +..+...+... |.+. +...++.. .+...+ +....... ...|.+.|++++|++++.
T Consensus 131 ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~--eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 131 VEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL--PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH--HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 9999988643 33444444443 7665 55555555 333333 33333444 889999999999999999
Q ss_pred HHHhCCCCCChhhHHHHHHHhcc-cCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCC-----
Q 004856 223 LMRMEGAEFDSGTLINLLRSTVE-LKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD----- 296 (727)
Q Consensus 223 ~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----- 296 (727)
++.+.+. .+..-...+-.++.. .++ +.+..++.. .+..++.++..+...|.+.|+.++|.+++++++.
T Consensus 207 ~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 207 EARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 9999863 334445556566666 355 666666443 3346888999999999999999999999999864
Q ss_pred CCeehHHH------------------------------HHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhc
Q 004856 297 KDRVVWNI------------------------------MISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST 346 (727)
Q Consensus 297 ~~~~~~~~------------------------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 346 (727)
++..+|-- ++..+.+.++++-+.++. ...|.......-..+...
T Consensus 281 ~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~r~~~~~~ 354 (987)
T PRK09782 281 AQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEMLEERYAVSVA 354 (987)
T ss_pred CccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchHHHHHHhhccc
Confidence 22222211 133344445554333331 133433322111112222
Q ss_pred CCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-C-----ChhHHHHHHHHHHhcCC---hH
Q 004856 347 MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT-K-----TVVSWSSMIKGYVTHDQ---SL 417 (727)
Q Consensus 347 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~---~~ 417 (727)
.+...++.+.+..+.+.. +-+....--+.-...+.|+.++|.++|+.... + +...-+-++..|.+.+. ..
T Consensus 355 ~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 355 TRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred cCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 344555555555555442 11222222233334567777777777776554 1 12233455666665554 33
Q ss_pred HHHHH----------------------HHHHHH-CCCCC---CHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHh
Q 004856 418 EALRL----------------------FSEMKL-EGVEV---DFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSS 471 (727)
Q Consensus 418 ~A~~~----------------------~~~m~~-~g~~p---~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~ 471 (727)
+++.+ +..... .+..| +...+..+..++.. +..++|...+....... |+..
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~ 510 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAW 510 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchH
Confidence 33333 111111 01112 33444444444444 67777777665555443 3333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHh
Q 004856 472 VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD-LITFLGLLTACVN 550 (727)
Q Consensus 472 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~ 550 (727)
....+...+...|++++|...|+++....|+...+..+...+.+.|+.++|...+++..+.. |+ ...+..+......
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~ 588 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYI 588 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHh
Confidence 33334444567788888888887755444555556666677777788888888887777643 43 3333333344445
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHh-hHHHHHHHHHHcCCHHHHHHH
Q 004856 551 AGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPDAR-VWGPLLSACKMHSETELAELT 628 (727)
Q Consensus 551 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~A~~~ 628 (727)
.|++++|...+++..+ +.|+...+..+..++.+.|+.++|+..+++. ...|+.. .++.+..++...|+.++|+..
T Consensus 589 ~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 589 PGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred CCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 5788888888877774 3566667777777788888888888877776 4556443 455555567777888888888
Q ss_pred HHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 629 AEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 629 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
++++++++|+++.++..++.++...|++++|+..+++..+.
T Consensus 666 l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 666 LERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 88888888877778888888888888888888877776554
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-18 Score=194.45 Aligned_cols=581 Identities=10% Similarity=-0.003 Sum_probs=381.7
Q ss_pred CchhhHHHHHHHHHccCChhHHHHHHhcCCC--CCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcc-cHHHHHH
Q 004856 63 QNLILSSNLIDSYANLGLLSLSQQVFNSITS--PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAED-TYPFVIR 139 (727)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~ 139 (727)
.+..++..|...|.+.|+.++|+..+++..+ |+-.-|..++..+ +++.+|..+|+++... .|+.. ++..+..
T Consensus 76 ~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l~~~--~P~n~~~~~~la~ 150 (987)
T PRK09782 76 DNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEELLAQ--QKACDAVPTLRCR 150 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHHHHh--CCCChhHHHHHHH
Confidence 3477888899999999999999999987764 5444444444333 7888888888888764 33333 2222222
Q ss_pred Hh-----hccCChhHHHHHHHHHHHHcCCCchhHHHH-HHHhhhccCCCChhhhhhh-ccCCCCCcc---cHHHHHHHHH
Q 004856 140 SC-----SCLLDFISGEKIHAQVVKLGFDSFDDVGDA-LVEFYIKCDGGFENEKGMI-QRKFKDLKS---RWNSLISLAV 209 (727)
Q Consensus 140 ~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~y~~~~~g~~~~a~~~-~~~~~~~~~---~~~~li~~~~ 209 (727)
.. .+....+.+.+.++ .......|+..+..- +...|.+. |++++|... .++.+.++. -+..+-..|.
T Consensus 151 ~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l--~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~ 227 (987)
T PRK09782 151 SEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYL--KQWSQADTLYNEARQQNTLSAAERRQWFDVLL 227 (987)
T ss_pred HhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHH--hCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 20 11122244444444 222222223333333 35666666 666666555 444332221 1333444555
Q ss_pred hC-CCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCC-CC--------------------
Q 004856 210 QN-GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFC-KD-------------------- 267 (727)
Q Consensus 210 ~~-g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~-------------------- 267 (727)
+. ++ +++..+++. .++-|......+...+.+.|+.++|.+++..+...... |+
T Consensus 228 q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~ 302 (987)
T PRK09782 228 AGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALA 302 (987)
T ss_pred HhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhcc
Confidence 42 44 555555332 22245555555666666666666666555543322110 10
Q ss_pred ----------hhHHhHHHHHhhcCCChHHHHHHHhcCCCCCeehHHHHHHHH--HhcCCchHHHHHHHHHHHcCCCCChh
Q 004856 268 ----------LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAY--YQSGFPKESLELLMCMVRSGFRADLF 335 (727)
Q Consensus 268 ----------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~ 335 (727)
....-.++..+.+.++++.++++.. ....+. . ..+... ...+...++...+..|.+.. +-+..
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~ 377 (987)
T PRK09782 303 NYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA-TLPANE-M--LEERYAVSVATRNKAEALRLARLLYQQE-PANLT 377 (987)
T ss_pred chhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-CCCcch-H--HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHH
Confidence 1112233677778888887777744 222222 1 233222 23466677777777776651 11333
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHHHHHh-C-CCCChhHHHHHHHHHHhcCC---HHHHHHH-------------------
Q 004856 336 TAIAAVSSISTMKNIEWGKQMHANVLRN-G-SDYQVSVHNSLIDMYCECED---LNCARKI------------------- 391 (727)
Q Consensus 336 t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g-~~~~~~~~~~li~~~~~~g~---~~~A~~~------------------- 391 (727)
..--+---..+.|+.++|.+++...... + -..+....+-|+..|.+.+. ..++..+
T Consensus 378 ~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 457 (987)
T PRK09782 378 RLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGI 457 (987)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhh
Confidence 3333333456788899999999888763 1 22345556678888887766 3333222
Q ss_pred ------HhcCCC---C--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHH
Q 004856 392 ------FDSVKT---K--TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGY 460 (727)
Q Consensus 392 ------~~~~~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 460 (727)
+..... . +...|..+..++.. ++.++|+..|.+.... .|+......+..++...|++++|...++.
T Consensus 458 ~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rk 534 (987)
T PRK09782 458 ADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQK 534 (987)
T ss_pred hhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 111111 1 45677778777776 8999999988888765 47766555555666789999999999998
Q ss_pred HHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChH
Q 004856 461 SMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI-ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI 539 (727)
Q Consensus 461 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 539 (727)
+... +|+...+..+...+.+.|+.++|...+++.....|+. ..+..+...+...|++++|+..+++..+ +.|+..
T Consensus 535 a~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~ 610 (987)
T PRK09782 535 ISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSAN 610 (987)
T ss_pred Hhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHH
Confidence 7654 3334445666778899999999999999866444543 3333344445566999999999999998 568888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHH
Q 004856 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSAC 616 (727)
Q Consensus 540 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 616 (727)
.+..+..++.+.|++++|+..+++.... .|+ ...+..+...+...|++++|++.+++. ...| +...+..+..++
T Consensus 611 a~~~LA~~l~~lG~~deA~~~l~~AL~l---~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al 687 (987)
T PRK09782 611 AYVARATIYRQRHNVPAAVSDLRAALEL---EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVN 687 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 8999999999999999999999999854 554 668889999999999999999999988 5566 456788888889
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004856 617 KMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGL 671 (727)
Q Consensus 617 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 671 (727)
...|++++|+..++++++++|++..+....+++.....+++.|.+-+++.....+
T Consensus 688 ~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 688 QRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 9999999999999999999999999999999999999999999988877655544
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-20 Score=186.13 Aligned_cols=420 Identities=12% Similarity=0.121 Sum_probs=339.5
Q ss_pred HHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCC---CCeehHHHHHHHHHhcCC
Q 004856 238 NLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD---KDRVVWNIMISAYYQSGF 314 (727)
Q Consensus 238 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 314 (727)
.+..-.-+.|++++|++-...+-..+ +.+....-.+-..+....+.+....--....+ .-..+|..+...+-..|+
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhch
Confidence 34444556788888887665554433 22222222333455555555544332222222 245689999999999999
Q ss_pred chHHHHHHHHHHHcCCCCC-hhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChh-HHHHHHHHHHhcCCHHHHHHHH
Q 004856 315 PKESLELLMCMVRSGFRAD-LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVS-VHNSLIDMYCECEDLNCARKIF 392 (727)
Q Consensus 315 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~ 392 (727)
.++|+.+++.|.+. +|+ ...|..+..++...|+.+.|.+.+...++.. |+.. +.+-+.......|++++|...+
T Consensus 132 ~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 132 LQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred HHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHH
Confidence 99999999999875 564 5678889999999999999999999888763 4433 3445566667789999999998
Q ss_pred hcCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCc
Q 004856 393 DSVKTKT---VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVD-FVTIINILPACVNIGALEHVKYLHGYSMKLGLNS 468 (727)
Q Consensus 393 ~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~ 468 (727)
.+..+.+ .+.|+.|...+..+|+...|+..|++.... .|+ ...|..+...+...+.++.|...+....... +.
T Consensus 208 lkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn 284 (966)
T KOG4626|consen 208 LKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PN 284 (966)
T ss_pred HHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Cc
Confidence 8766543 378999999999999999999999998864 566 4578888899999999999998887777654 44
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHH
Q 004856 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD-IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD-LITFLGLLT 546 (727)
Q Consensus 469 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 546 (727)
...++..+...|...|.++-|...+++.....|+ ...|+.|..++...|++.+|...|++.+. +.|+ ....+.|..
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgn 362 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGN 362 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHH
Confidence 5677778888899999999999999997666776 57999999999999999999999999998 5676 668899999
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHh-hHHHHHHHHHHcCCHH
Q 004856 547 ACVNAGLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGHMDEARELVKDM-PFKPDAR-VWGPLLSACKMHSETE 623 (727)
Q Consensus 547 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~ 623 (727)
.+...|.+++|..+|....+ +.|. ....+.|...|-..|++++|+..+++. .++|+.. .++.+...|...|+.+
T Consensus 363 i~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHH
Confidence 99999999999999999884 4566 557899999999999999999999988 8889764 7888888899999999
Q ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004856 624 LAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 624 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 670 (727)
.|.+.+.+++..+|.-++++..|+.+|...|+..+|+.-++...+..
T Consensus 440 ~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 440 AAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999876653
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-17 Score=184.84 Aligned_cols=420 Identities=13% Similarity=0.035 Sum_probs=258.1
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhc
Q 004856 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSK 280 (727)
Q Consensus 201 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 280 (727)
+......+.+.|++++|++.|++..+ +.|+...|..+..++...|++++|...+..+++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 44455667778888888888888765 45666677777777777777777777777776654 2234455556666666
Q ss_pred CCChHHHHHHHhcCCCCC---eehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHH
Q 004856 281 LASLEDAKMLFDKMSDKD---RVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMH 357 (727)
Q Consensus 281 ~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 357 (727)
.|++++|...|......+ ......++.-+.. ..+........+. .|
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~--~~------------------------- 255 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILET--KP------------------------- 255 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhc--CC-------------------------
Confidence 666666665554332111 0000111110000 1111111111111 11
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh---hHHHHHHHH---HHhcCChHHHHHHHHHHHHCC-
Q 004856 358 ANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV---VSWSSMIKG---YVTHDQSLEALRLFSEMKLEG- 430 (727)
Q Consensus 358 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g- 430 (727)
.+...+..+.. |...........-++...+.+. ..+..+... ....+++++|++.|++..+.+
T Consensus 256 ---------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~ 325 (615)
T TIGR00990 256 ---------ENLPSVTFVGN-YLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGK 325 (615)
T ss_pred ---------CCCCCHHHHHH-HHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCC
Confidence 11111111111 1111111111111111111000 111111111 122356777777777777654
Q ss_pred CCCC-HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHH
Q 004856 431 VEVD-FVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNS 508 (727)
Q Consensus 431 ~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~ 508 (727)
..|+ ...+..+...+...|++++|...++..++.. +.....+..+...+...|++++|...|++.....| +...|..
T Consensus 326 ~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 404 (615)
T TIGR00990 326 LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYH 404 (615)
T ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 2333 3345555566667777777777777776653 23355666777778888888888888887544344 5678888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 004856 509 MISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA 587 (727)
Q Consensus 509 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 587 (727)
+...+...|++++|+..|++.++. .| +...+..+..++.+.|++++|+..++...+. .+.+...+..+...+...
T Consensus 405 lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~ 480 (615)
T TIGR00990 405 RAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQ 480 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHc
Confidence 888899999999999999998884 45 4667778888888999999999999988854 333467888889999999
Q ss_pred CCHHHHHHHHHhC-CCCCCH-hh-------HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhH
Q 004856 588 GHMDEARELVKDM-PFKPDA-RV-------WGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNG 658 (727)
Q Consensus 588 g~~~~A~~~~~~~-~~~p~~-~~-------~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 658 (727)
|++++|++.|++. ...|+. .. ++.....+...|++++|+.+++++++++|++..++..++.++...|++++
T Consensus 481 g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~e 560 (615)
T TIGR00990 481 NKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDE 560 (615)
T ss_pred cCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHH
Confidence 9999999999886 444431 11 11112223446899999999999999999888889999999999999999
Q ss_pred HHHHHHHHHhC
Q 004856 659 VAKMRTFLRDR 669 (727)
Q Consensus 659 a~~~~~~m~~~ 669 (727)
|.+++++..+.
T Consensus 561 Ai~~~e~A~~l 571 (615)
T TIGR00990 561 ALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHH
Confidence 99999887654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-18 Score=181.81 Aligned_cols=293 Identities=13% Similarity=0.103 Sum_probs=215.9
Q ss_pred HHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhcCCCh
Q 004856 378 MYCECEDLNCARKIFDSVKTK---TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVD---FVTIINILPACVNIGAL 451 (727)
Q Consensus 378 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~~~~ 451 (727)
.+...|++++|...|+++.+. +..+|..+...+...|++++|+.+++.+...+..++ ...+..+...+...|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 345566777777777666543 334566666777777777777777777766432221 13455666677777777
Q ss_pred HHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCC------HHHHHHHHHHHHHcCChHHHHHH
Q 004856 452 EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD------IITWNSMISAYAKHGDWSQCFKL 525 (727)
Q Consensus 452 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~ 525 (727)
+.|..++..+.+.. +.+..++..++.++.+.|++++|.+.++.+....|+ ...|..+...+.+.|++++|...
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 77777777776643 345667777778888888888888888876543332 12455677788889999999999
Q ss_pred HHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 004856 526 YTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS--QEHYASMVNLLGRAGHMDEARELVKDM-P 601 (727)
Q Consensus 526 ~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 601 (727)
|+++.+. .| +...+..+...+.+.|++++|.++++++.+. .|+ ..++..++.+|.+.|++++|.+.++++ .
T Consensus 203 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 203 LKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999874 35 4567788888999999999999999998864 333 456788899999999999999999987 4
Q ss_pred CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHh---cCChhHHHHHHHHHHhCCCccCCce
Q 004856 602 FKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAA---AGKWNGVAKMRTFLRDRGLKKTPGC 677 (727)
Q Consensus 602 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~ 677 (727)
..|+...+..+...+.+.|++++|..+++++++..|++. .+..+...+.. .|+.+++..++++|.+++++++|.+
T Consensus 278 ~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 278 EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 567777777778889999999999999999999988655 55555555443 5689999999999999888888874
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-16 Score=176.12 Aligned_cols=352 Identities=13% Similarity=0.033 Sum_probs=275.9
Q ss_pred cCCChHHHHHHHhcCCCC------CeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHH
Q 004856 280 KLASLEDAKMLFDKMSDK------DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWG 353 (727)
Q Consensus 280 ~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 353 (727)
+..+++.-.-+|..-++. +..-...++..+.+.|++++|+.+++........+ ...+..+..+....|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHH
Confidence 455666555556555442 33445567788889999999999999998764333 33444555666779999999
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 004856 354 KQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT---KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG 430 (727)
Q Consensus 354 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 430 (727)
...++.+.+.. +.+...+..+...+...|++++|...|++... .+...|..+...+...|++++|...++++....
T Consensus 96 ~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 96 LQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 99999998874 44566788889999999999999999998764 256788889999999999999999999887653
Q ss_pred CCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHH
Q 004856 431 VEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSM 509 (727)
Q Consensus 431 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l 509 (727)
..+. ..+.. +..+...|++++|...++.+.+....++......+...+.+.|++++|...|++.....| +...+..+
T Consensus 175 P~~~-~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 252 (656)
T PRK15174 175 PPRG-DMIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSL 252 (656)
T ss_pred CCCH-HHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 3222 22222 344788899999999999887765444445556667788999999999999998655455 56788889
Q ss_pred HHHHHHcCChHH----HHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHH
Q 004856 510 ISAYAKHGDWSQ----CFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS-QEHYASMVNL 583 (727)
Q Consensus 510 i~~~~~~g~~~~----A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~ 583 (727)
...|...|++++ |+..|++..+ +.| +...+..+...+...|++++|...+++.... .|+ ...+..+...
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~ 327 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 999999999986 8999999998 456 4678889999999999999999999999864 454 5577788999
Q ss_pred HHhcCCHHHHHHHHHhC-CCCCCHhhHHH-HHHHHHHcCCHHHHHHHHHHHHccCCCCc
Q 004856 584 LGRAGHMDEARELVKDM-PFKPDARVWGP-LLSACKMHSETELAELTAEKLISMEPENA 640 (727)
Q Consensus 584 ~~~~g~~~~A~~~~~~~-~~~p~~~~~~~-ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (727)
|.+.|++++|.+.++++ ...|+...+.. +..++...|+.++|+..++++++..|++.
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 99999999999999988 45676655444 44568999999999999999999999754
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.7e-18 Score=177.67 Aligned_cols=222 Identities=13% Similarity=0.122 Sum_probs=94.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHH
Q 004856 373 NSLIDMYCECEDLNCARKIFDSVKT---KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF----VTIINILPAC 445 (727)
Q Consensus 373 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~ 445 (727)
..+...|.+.|++++|..+|+++.+ .+..+++.++..+.+.|++++|++.++++.+.+..+.. ..+..+...+
T Consensus 111 ~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 190 (389)
T PRK11788 111 QELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQA 190 (389)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 3344444444444444444444432 12334444444444444444444444444433221111 1122233334
Q ss_pred hcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCC--HHHHHHHHHHHHHcCChHHHH
Q 004856 446 VNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD--IITWNSMISAYAKHGDWSQCF 523 (727)
Q Consensus 446 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~ 523 (727)
...|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.|+++....|+ ...++.++.+|...|++++|.
T Consensus 191 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 269 (389)
T PRK11788 191 LARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGL 269 (389)
T ss_pred HhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHH
Confidence 44444444444444444332 122333344444444455555555555443322222 123444444555555555555
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh---cCCHHHHHHHHHhC
Q 004856 524 KLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR---AGHMDEARELVKDM 600 (727)
Q Consensus 524 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~~ 600 (727)
..++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+++..+++++
T Consensus 270 ~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 270 EFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR---HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred HHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence 555554442 344333444444455555555555555544432 3444444444444332 23444444444444
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-15 Score=159.64 Aligned_cols=576 Identities=14% Similarity=0.095 Sum_probs=402.2
Q ss_pred hhHHHHHHhcCCC--CCcchHHHHHHHH--HcCCCchHHHHHHHHHHhC--CCCCCcccHHHHHHHhhccCChhHHHHHH
Q 004856 81 LSLSQQVFNSITS--PNSLLYGTILKNL--SKFGEYEKTLLVYKQMALQ--SMYPAEDTYPFVIRSCSCLLDFISGEKIH 154 (727)
Q Consensus 81 ~~~A~~~f~~~~~--~~~~~~n~li~~~--~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 154 (727)
++.|...|..... |+-+. -.+.+|+ -..|++..|+.+|...... ..+||... .+-.++.+.++.+.|...+
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil-~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNIL-ALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchH-HHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHH
Confidence 4777777776543 33221 1233333 3467999999999996553 44555532 2224456888999999888
Q ss_pred HHHHHHcCCCchhHHHHHHHhhh---cc-CCCChhhhhhh-cc---CCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHh
Q 004856 155 AQVVKLGFDSFDDVGDALVEFYI---KC-DGGFENEKGMI-QR---KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRM 226 (727)
Q Consensus 155 ~~~~~~~~~~~~~~~~~li~~y~---~~-~~g~~~~a~~~-~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 226 (727)
..+++... ...++++..+. .. +...+..+... .. ....|++..|.|-+-|...|++..++.+...+..
T Consensus 223 ~ralqLdp----~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~ 298 (1018)
T KOG2002|consen 223 ERALQLDP----TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIK 298 (1018)
T ss_pred HHHHhcCh----hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 88877643 22233332211 01 11233334443 22 2346788899999999999999999999999876
Q ss_pred CCCC--CChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCCC---Ceeh
Q 004856 227 EGAE--FDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK---DRVV 301 (727)
Q Consensus 227 ~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~ 301 (727)
.-.. .-..+|-.+.+++-..|+++.|...|-..++.....-+..+-.|..+|.+.|+++.+...|+++... +..+
T Consensus 299 ~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~et 378 (1018)
T KOG2002|consen 299 NTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYET 378 (1018)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHH
Confidence 5311 1234688889999999999999999998887753333445567889999999999999999998653 4455
Q ss_pred HHHHHHHHHhcC----CchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHH----HHhCCCCChhHHH
Q 004856 302 WNIMISAYYQSG----FPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANV----LRNGSDYQVSVHN 373 (727)
Q Consensus 302 ~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~ 373 (727)
...|...|+..+ ..+.|..++.+..+.- .-|...|..+-..+- .+++.....++..+ ...+-.+...+.|
T Consensus 379 m~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e-~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LN 456 (1018)
T KOG2002|consen 379 MKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLE-QTDPWASLDAYGNALDILESKGKQIPPEVLN 456 (1018)
T ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 566666666665 3455666655554432 234455555544444 34444446665544 4456667888899
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCC-------Ch------hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHH
Q 004856 374 SLIDMYCECEDLNCARKIFDSVKTK-------TV------VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFV-TII 439 (727)
Q Consensus 374 ~li~~~~~~g~~~~A~~~~~~~~~~-------~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~ 439 (727)
.+...+...|+++.|...|++.... |. .+--.+...+-..++++.|.+.|+.+... .|.-+ .|.
T Consensus 457 Nvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~yl 534 (1018)
T KOG2002|consen 457 NVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYL 534 (1018)
T ss_pred hHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHH
Confidence 9999999999999999999876532 22 12223455556678999999999999886 46543 455
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCC---CCCHHHHHHHHHHHH--
Q 004856 440 NILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID---SKDIITWNSMISAYA-- 514 (727)
Q Consensus 440 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~li~~~~-- 514 (727)
.++......+...+|...+..+.... ..++.+++.+...|.+...+..|.+-|..+... .+|..+.-+|.+.|.
T Consensus 535 Rl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~ 613 (1018)
T KOG2002|consen 535 RLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQA 613 (1018)
T ss_pred HhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHH
Confidence 55544445577888888888877754 455566666777888888888888866553321 356555555555443
Q ss_pred ----------HcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 004856 515 ----------KHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNL 583 (727)
Q Consensus 515 ----------~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 583 (727)
..+..++|+++|.+.+.. .| |...-+.+.-+++..|++.+|..+|....+. ..-...+|-.+..+
T Consensus 614 l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~ 689 (1018)
T KOG2002|consen 614 LHNPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHC 689 (1018)
T ss_pred hcccccChHHHHHHHHHHHHHHHHHHhc--CcchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHH
Confidence 234578899999999884 45 7888888999999999999999999999986 33456688899999
Q ss_pred HHhcCCHHHHHHHHHhC----CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHH--------
Q 004856 584 LGRAGHMDEARELVKDM----PFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYA-------- 651 (727)
Q Consensus 584 ~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-------- 651 (727)
|..+|++..|+++|+.. .-+.+..+.+.|..++...|.+.+|.+....+..+.|.++..-..++.+..
T Consensus 690 ~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr 769 (1018)
T KOG2002|consen 690 YVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILR 769 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHh
Confidence 99999999999999876 223467788889999999999999999999999999999887666654433
Q ss_pred -----------hcCChhHHHHHHHHHHhCCCc
Q 004856 652 -----------AAGKWNGVAKMRTFLRDRGLK 672 (727)
Q Consensus 652 -----------~~g~~~~a~~~~~~m~~~~~~ 672 (727)
..+..++|.++|..+...+-+
T Consensus 770 ~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 770 LEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 335677888888888877543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-15 Score=171.45 Aligned_cols=401 Identities=11% Similarity=0.005 Sum_probs=203.8
Q ss_pred ChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCC---CCeehHHHHHHH
Q 004856 232 DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD---KDRVVWNIMISA 308 (727)
Q Consensus 232 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 308 (727)
+..-..-.+......|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++..+ .+...+..++..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~ 92 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILT 92 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 33334444555556666666666666665522 33444566666777777777777777777432 244556666677
Q ss_pred HHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHH
Q 004856 309 YYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCA 388 (727)
Q Consensus 309 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 388 (727)
+...|++++|+..+++..+. .|+...+..+..++...|+.++|...++.+.+.. +.+..++..+...+...|..+.|
T Consensus 93 l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHH
Confidence 77777777777777777665 3332225566666667777777777777777664 22444555667777777888888
Q ss_pred HHHHhcCCCCChh--------HHHHHHHHHH-----hcCCh---HHHHHHHHHHHHC-CCCCCHH-HHH----HHHHHHh
Q 004856 389 RKIFDSVKTKTVV--------SWSSMIKGYV-----THDQS---LEALRLFSEMKLE-GVEVDFV-TII----NILPACV 446 (727)
Q Consensus 389 ~~~~~~~~~~~~~--------~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~p~~~-t~~----~ll~a~~ 446 (727)
.+.++.... ++. ....++.... ..+++ ++|++.++.+... ...|+.. .+. ..+.++.
T Consensus 170 l~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll 248 (765)
T PRK10049 170 LGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL 248 (765)
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH
Confidence 877776665 211 1111222111 11223 5666667666643 1222221 111 0122333
Q ss_pred cCCChHHHHHHHHHHHHhCCC-chHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCC-----HHHHHHHHHHHHHcCChH
Q 004856 447 NIGALEHVKYLHGYSMKLGLN-SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD-----IITWNSMISAYAKHGDWS 520 (727)
Q Consensus 447 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~ 520 (727)
..|+.++|...++.+.+.+.+ |+. ....+..+|...|++++|+..|+++....|. ...+..+..++...|+++
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 445555555555555554321 111 1111344455555555555555553322221 122333444455555555
Q ss_pred HHHHHHHHHHHCC-----------CCCCh---HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 004856 521 QCFKLYTQMKQSD-----------VRPDL---ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR 586 (727)
Q Consensus 521 ~A~~~~~~m~~~g-----------~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 586 (727)
+|.+.++++.+.. -.|+. ..+..+...+...|++++|+..++++... .+.+...+..++..+..
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHh
Confidence 5555555555421 01111 12233444445555555555555555432 22234444555555555
Q ss_pred cCCHHHHHHHHHhC-CCCCCH-hhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCc
Q 004856 587 AGHMDEARELVKDM-PFKPDA-RVWGPLLSACKMHSETELAELTAEKLISMEPENA 640 (727)
Q Consensus 587 ~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (727)
.|++++|++.+++. ...|+. ..+..+...+...|++++|+.+++++++..|+++
T Consensus 406 ~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 406 RGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 55555555555544 333432 2333333334455555555555555555555444
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-15 Score=169.81 Aligned_cols=393 Identities=9% Similarity=0.003 Sum_probs=297.4
Q ss_pred ChhHHhHHHHHhhcCCChHHHHHHHhcCCC-C--CeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCC-hhhHHHHHH
Q 004856 267 DLSVNTALLSMYSKLASLEDAKMLFDKMSD-K--DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD-LFTAIAAVS 342 (727)
Q Consensus 267 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 342 (727)
+.....-.+......|+.++|+.++.+... . +...+..+...+.+.|++++|.++|++.... .|+ ......+..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 444445566677788999999999999864 2 4445899999999999999999999998875 343 555667778
Q ss_pred HhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhcCChHHH
Q 004856 343 SISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK---TVVSWSSMIKGYVTHDQSLEA 419 (727)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A 419 (727)
.+...|+.++|...++.+++.. +.+.. +..+..++...|+.++|...++++.+. +...+..+...+...+..++|
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHH
Confidence 8889999999999999999873 44555 888899999999999999999988753 455667788888899999999
Q ss_pred HHHHHHHHHCCCCCCHH------HHHHHHHHHh-----cCCCh---HHHHHHHHHHHHh-CCCchHh-H-HHH---HHHH
Q 004856 420 LRLFSEMKLEGVEVDFV------TIINILPACV-----NIGAL---EHVKYLHGYSMKL-GLNSLSS-V-NTA---IFIS 479 (727)
Q Consensus 420 ~~~~~~m~~~g~~p~~~------t~~~ll~a~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~-~~~---li~~ 479 (727)
++.+++... .|+.. ....++.... ..+.+ ++|...++.+.+. ...|+.. . ... .+.+
T Consensus 170 l~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 170 LGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 999987664 33320 1111222221 12233 6677777777754 2223221 1 111 1234
Q ss_pred HHhcCCHHHHHHHHHhccCCC---CC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-----hHHHHHHHHHHHh
Q 004856 480 YAKCGCIEMAGELFDEEKIDS---KD-IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD-----LITFLGLLTACVN 550 (727)
Q Consensus 480 ~~~~g~~~~A~~~~~~~~~~~---~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~~~~~ 550 (727)
+...|++++|...|+++.... |+ ...| +...|...|++++|+..|+++.+. .|. ......+..++..
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPWAQRW--VASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHh
Confidence 457799999999999977543 32 2222 567899999999999999998864 332 2446667778899
Q ss_pred cCCHHHHHHHHHHhHHhcC----------CCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHH
Q 004856 551 AGLVEEGRIIFKEMKESYG----------YEPS---QEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSA 615 (727)
Q Consensus 551 ~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~ 615 (727)
.|++++|..+++.+..... -.|+ ...+..+...+...|++++|+++++++ ...| +...+..+...
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l 402 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASV 402 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999986410 0123 234567788899999999999999998 4455 45678888888
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004856 616 CKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 616 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 670 (727)
+...|+.++|++.++++++++|++...+..++..+...|++++|..+++.+.+..
T Consensus 403 ~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 403 LQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999987753
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-15 Score=166.78 Aligned_cols=329 Identities=9% Similarity=-0.041 Sum_probs=266.0
Q ss_pred ChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHH
Q 004856 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK---TVVSWSSMIKG 409 (727)
Q Consensus 333 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~ 409 (727)
+......++..+.+.|+.+.|..++..++.....+.. ....++......|++++|...|+++... +...|..+...
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~-~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~ 119 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRD-LLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASV 119 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh-HHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 3445666778888999999999999999888654433 4445556667799999999999998753 55678889999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHH
Q 004856 410 YVTHDQSLEALRLFSEMKLEGVEVD-FVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEM 488 (727)
Q Consensus 410 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 488 (727)
+.+.|++++|+..|++.... .|+ ...+..+...+...|++++|...+..+......+.. .+..+ ..+.+.|++++
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~-~~l~~~g~~~e 195 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATC-LSFLNKSRLPE 195 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHH-HHHHHcCCHHH
Confidence 99999999999999999875 455 556777888999999999999999888766543333 33333 34788999999
Q ss_pred HHHHHHhccCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHH----HHHHHH
Q 004856 489 AGELFDEEKIDSK--DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEE----GRIIFK 562 (727)
Q Consensus 489 A~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~----a~~~~~ 562 (727)
|...++.+....| +...+..+...+...|++++|+..+++..+.. +.+...+..+...+...|++++ |...++
T Consensus 196 A~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 196 DHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 9999998654322 33445556778899999999999999999853 2357778889999999999986 899999
Q ss_pred HhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 004856 563 EMKESYGYEPS-QEHYASMVNLLGRAGHMDEARELVKDM-PFKPD-ARVWGPLLSACKMHSETELAELTAEKLISMEPEN 639 (727)
Q Consensus 563 ~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 639 (727)
++.+. .|+ ...+..+...+.+.|++++|...+++. ...|+ ...+..+...+...|++++|+..++++.+..|++
T Consensus 275 ~Al~l---~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 275 HALQF---NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 99853 454 668999999999999999999999988 45665 4466667777999999999999999999999988
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004856 640 AGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 640 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 670 (727)
...+..++.++...|++++|...+++..+..
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 7777778889999999999999999876653
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-14 Score=137.98 Aligned_cols=443 Identities=13% Similarity=0.104 Sum_probs=288.6
Q ss_pred cchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhc--cCChhHHH-HHHHHHHHHcCCCchhHHHHH
Q 004856 96 SLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSC--LLDFISGE-KIHAQVVKLGFDSFDDVGDAL 172 (727)
Q Consensus 96 ~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l 172 (727)
+++=|.|+. ...+|...++.-+|+.|+..|+..+...-..|++..+- ..++..++ +.+-.|.+.| +....+|..
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sWK~- 192 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSWKS- 192 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccccc-
Confidence 446666665 46788999999999999999988777766666654442 22333222 1122222222 222233321
Q ss_pred HHhhhccCCCChhhhhhhccCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHH
Q 004856 173 VEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG 252 (727)
Q Consensus 173 i~~y~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 252 (727)
|.+.+ -+.+...+...+|..||.|+|+-...++|.+++++-.+...+.+..+||.+|.+-+-. .+
T Consensus 193 ---------G~vAd--L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~ 257 (625)
T KOG4422|consen 193 ---------GAVAD--LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VG 257 (625)
T ss_pred ---------ccHHH--HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----cc
Confidence 54444 2255556677889999999999999999999999999888899999999999876433 33
Q ss_pred HHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCCCCeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC
Q 004856 253 RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA 332 (727)
Q Consensus 253 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 332 (727)
+++..+|+...+.||..++|+++...++.|+++.|.+ .|++++.+|++-|+.|
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~---------------------------aalqil~EmKeiGVeP 310 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARK---------------------------AALQILGEMKEIGVEP 310 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHH---------------------------HHHHHHHHHHHhCCCc
Confidence 7888999998889999999998888888888877653 3566777788888888
Q ss_pred ChhhHHHHHHHhhcCCChHH-HHHHHHHHHHh----CCCC----ChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-----
Q 004856 333 DLFTAIAAVSSISTMKNIEW-GKQMHANVLRN----GSDY----QVSVHNSLIDMYCECEDLNCARKIFDSVKTK----- 398 (727)
Q Consensus 333 ~~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~~----g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----- 398 (727)
...+|..+|..+++.++..+ +..+..++... .+.| |...+...++.+.+..+.+.|.++-.-....
T Consensus 311 sLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ 390 (625)
T KOG4422|consen 311 SLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKF 390 (625)
T ss_pred chhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhh
Confidence 88888888877777776643 33333333321 2222 3444566667777777777777665544322
Q ss_pred ------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhH
Q 004856 399 ------TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSV 472 (727)
Q Consensus 399 ------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 472 (727)
...-|..+....++....+.-+..|+.|.-.-+-|+..+...++.+....+.++-..+++..++..|.......
T Consensus 391 ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l 470 (625)
T KOG4422|consen 391 IGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDL 470 (625)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHH
Confidence 11235566677788888888899999998887889999999999999999999999999999888875444333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 004856 473 NTAIFISYAKCGCIEMAGELFDEEKIDSKDII---TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACV 549 (727)
Q Consensus 473 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 549 (727)
..-++..+++..- .|+.. -+.....-++. .-.+.....-.+|.+..+.| ...+.++-.+.
T Consensus 471 ~eeil~~L~~~k~--------------hp~tp~r~Ql~~~~ak~aa-d~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~ 533 (625)
T KOG4422|consen 471 REEILMLLARDKL--------------HPLTPEREQLQVAFAKCAA-DIKEAYESQPIRQRAQDWPA--TSLNCIAILLL 533 (625)
T ss_pred HHHHHHHHhcCCC--------------CCCChHHHHHHHHHHHHHH-HHHHHHHhhHHHHHhccCCh--hHHHHHHHHHH
Confidence 3333333332210 22222 22222222111 11122223344555544443 34455556667
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCChhHHH---HHHHHHHhcCCHHHHHHHHHhC
Q 004856 550 NAGLVEEGRIIFKEMKESYGYEPSQEHYA---SMVNLLGRAGHMDEARELVKDM 600 (727)
Q Consensus 550 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~---~li~~~~~~g~~~~A~~~~~~~ 600 (727)
+.|..++|.+++..+.++..-.|.....+ -+++.-.+....-.|..+++-|
T Consensus 534 R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 534 RAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 88888888888888755533334444444 4445555667777787777766
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.6e-14 Score=148.33 Aligned_cols=413 Identities=13% Similarity=0.071 Sum_probs=219.8
Q ss_pred HHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCCCC------eehHHHHHHHHHhcCCchHHHHHHHH
Q 004856 251 LGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKD------RVVWNIMISAYYQSGFPKESLELLMC 324 (727)
Q Consensus 251 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~ 324 (727)
.|.+.+...-... ..++.+.+.|.+.|.-.|+++.+..+...+...+ ..+|-.+.++|-..|++++|...|.+
T Consensus 254 ~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~ 332 (1018)
T KOG2002|consen 254 KGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYME 332 (1018)
T ss_pred HHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 3444444333332 3344555555555555555555555555443321 12344455555555555555555555
Q ss_pred HHHcCCCCChhh--HHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC----CHHHHHHHHhcCCCC
Q 004856 325 MVRSGFRADLFT--AIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECE----DLNCARKIFDSVKTK 398 (727)
Q Consensus 325 m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~ 398 (727)
-.+. .||.++ +..+.+.+.+.|+++.+...|+.+.+.. +.+..+...|...|...+ ..+.|..+..+...+
T Consensus 333 s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~ 409 (1018)
T KOG2002|consen 333 SLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ 409 (1018)
T ss_pred HHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc
Confidence 4432 233322 2234445555555555555555555442 233334444444444443 233444444333322
Q ss_pred -----------------------------------------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCC
Q 004856 399 -----------------------------------------TVVSWSSMIKGYVTHDQSLEALRLFSEMKLE---GVEVD 434 (727)
Q Consensus 399 -----------------------------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~ 434 (727)
.+...|.+...+...|.+.+|...|.+.... ...+|
T Consensus 410 ~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~d 489 (1018)
T KOG2002|consen 410 TPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKD 489 (1018)
T ss_pred ccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcc
Confidence 2233444444445555555555555544432 11222
Q ss_pred HH-----H-HHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhcc-CCCCCHHHHH
Q 004856 435 FV-----T-IINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEK-IDSKDIITWN 507 (727)
Q Consensus 435 ~~-----t-~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~ 507 (727)
.. | --.+....-..++.+.|.+.+..+.+... .-+..|--+.-+-...+...+|...+.... ....+...|.
T Consensus 490 e~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp-~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~ars 568 (1018)
T KOG2002|consen 490 EGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP-GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARS 568 (1018)
T ss_pred ccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc-hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHH
Confidence 21 1 11122222333455555555555544321 111111111111112234445555555522 2233444555
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCC-CCCChHHHHHHHHHHHh------------cCCHHHHHHHHHHhHHhcCCCCCh
Q 004856 508 SMISAYAKHGDWSQCFKLYTQMKQSD-VRPDLITFLGLLTACVN------------AGLVEEGRIIFKEMKESYGYEPSQ 574 (727)
Q Consensus 508 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~~~~p~~ 574 (727)
-+...+.....+..|.+-|+.....- ..+|..+...|.+.|.. .+..++|+++|.++.+ ..+.|.
T Consensus 569 l~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~ 646 (1018)
T KOG2002|consen 569 LLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNM 646 (1018)
T ss_pred HHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchh
Confidence 45555666666666666555444321 12466666666665553 2456778888877775 345566
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccC--CCCcchHHHHHHHH
Q 004856 575 EHYASMVNLLGRAGHMDEARELVKDMP--FKPDARVWGPLLSACKMHSETELAELTAEKLISME--PENAGNYVLLSNIY 650 (727)
Q Consensus 575 ~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~ 650 (727)
..-+.+.-.++..|++.+|..+|.+.. ......+|..+...|...|++-.|++.|+..++.. .+++.....|+.++
T Consensus 647 yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~ 726 (1018)
T KOG2002|consen 647 YAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAW 726 (1018)
T ss_pred hhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 777778888888999999999998772 23345678888888999999999999999888732 34667788889999
Q ss_pred HhcCChhHHHHHHHHHHhCC
Q 004856 651 AAAGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 651 ~~~g~~~~a~~~~~~m~~~~ 670 (727)
.+.|++.+|.+.........
T Consensus 727 y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 727 YEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHhhhHHHHHHHHHHHHHhC
Confidence 99999998888877665543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.6e-15 Score=161.46 Aligned_cols=246 Identities=13% Similarity=0.018 Sum_probs=162.7
Q ss_pred CChHHHHHHHHHHHHhC-C-CCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhcCChHHHHHH
Q 004856 348 KNIEWGKQMHANVLRNG-S-DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK---TVVSWSSMIKGYVTHDQSLEALRL 422 (727)
Q Consensus 348 ~~~~~a~~~~~~~~~~g-~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~ 422 (727)
+++++|.+.++..++.+ . +.....++.+...+...|++++|...|+...+. +..+|..+...+...|++++|+..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~ 387 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEED 387 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34455555555555443 1 122344556666666677777777777665432 234566666777777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-
Q 004856 423 FSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK- 501 (727)
Q Consensus 423 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~- 501 (727)
|++..+.. +.+...+..+...+...|++++|...++..++.. +.+...+..+..++.+.|++++|...|++.....|
T Consensus 388 ~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~ 465 (615)
T TIGR00990 388 FDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE 465 (615)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 77776542 2234566666667777777777777777776654 33455566677778888888888888887544344
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--hH------HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC
Q 004856 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD--LI------TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS 573 (727)
Q Consensus 502 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~------t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 573 (727)
+...|+.+...+...|++++|++.|++..+. .|+ .. .++..+..+...|++++|.+++++.... .|+
T Consensus 466 ~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l---~p~ 540 (615)
T TIGR00990 466 APDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII---DPE 540 (615)
T ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---CCC
Confidence 4677888888888888888888888888773 332 11 1222223334468888898888887743 454
Q ss_pred -hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 004856 574 -QEHYASMVNLLGRAGHMDEARELVKDM 600 (727)
Q Consensus 574 -~~~~~~li~~~~~~g~~~~A~~~~~~~ 600 (727)
...+..+...+.+.|++++|.++|++.
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERA 568 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 446788888888899999998888877
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.1e-14 Score=155.16 Aligned_cols=428 Identities=10% Similarity=0.025 Sum_probs=275.7
Q ss_pred HHHhCCCchhHHHHHHHHHhCCCCCChh-hHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChH
Q 004856 207 LAVQNGKSEKSFELFKLMRMEGAEFDSG-TLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLE 285 (727)
Q Consensus 207 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 285 (727)
...+.|+++.|++.|++..+. .|+.. ....++..+...|+.++|..+++..+.. -.........+...|...|+++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKA--GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhh--CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHH
Confidence 457889999999999998875 45542 2227777778889999999999888811 1222233333456788889999
Q ss_pred HHHHHHhcCCCC---CeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHH
Q 004856 286 DAKMLFDKMSDK---DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLR 362 (727)
Q Consensus 286 ~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 362 (727)
+|..+|+++.+. |...+..++..+.+.++.++|++.++++... .|+...+..++..+...++..+|.+.++.+++
T Consensus 120 ~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 120 QALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 999999988653 4556777788888899999999999988765 56655554444444445666568888888888
Q ss_pred hCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-ChhHHHH----HHHHHHhcC---------C---hHHHHHHHHH
Q 004856 363 NGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK-TVVSWSS----MIKGYVTHD---------Q---SLEALRLFSE 425 (727)
Q Consensus 363 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~----li~~~~~~g---------~---~~~A~~~~~~ 425 (727)
.. +.+...+..++....+.|-...|.++..+-+.- +...+.- -+.-..+.+ + .+.|+.-++.
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 75 556777788888888889888888888775532 1111111 111111111 1 2345555555
Q ss_pred HHHC-CCCCCH-HHH----HHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 004856 426 MKLE-GVEVDF-VTI----INILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499 (727)
Q Consensus 426 m~~~-g~~p~~-~t~----~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 499 (727)
+... +..|.. ..| .--+-++...++..++...++.+...+.+.-..+-.++.++|...++.++|..++.++...
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 5431 122322 122 2234466677777777777777777766555556677777777777777777777775321
Q ss_pred C-------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-----------CCC--h-HHHHHHHHHHHhcCCHHHHH
Q 004856 500 S-------KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDV-----------RPD--L-ITFLGLLTACVNAGLVEEGR 558 (727)
Q Consensus 500 ~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~--~-~t~~~ll~~~~~~g~~~~a~ 558 (727)
. ++......|.-+|...+++++|..+++++.+.-- .|| - ..+..++..+...|++.+|+
T Consensus 357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae 436 (822)
T PRK14574 357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQ 436 (822)
T ss_pred cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence 1 1233345667777777777777777777776210 122 1 22344556667777777777
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHh-hHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 004856 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPDAR-VWGPLLSACKMHSETELAELTAEKLISME 636 (727)
Q Consensus 559 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 636 (727)
+.++++... -+-|......+.+.+...|++.+|++.++.. ...|+.. +......+....+++++|..+.+.+.+..
T Consensus 437 ~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 437 KKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 777777643 3445667777777777777777777777655 3455433 44444555667777777777777777777
Q ss_pred CCCcch
Q 004856 637 PENAGN 642 (727)
Q Consensus 637 p~~~~~ 642 (727)
|+++.+
T Consensus 515 Pe~~~~ 520 (822)
T PRK14574 515 PEDIPS 520 (822)
T ss_pred CCchhH
Confidence 766643
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.7e-14 Score=153.34 Aligned_cols=418 Identities=10% Similarity=-0.012 Sum_probs=183.0
Q ss_pred cccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCCCCeehH-HHH--HHHHHhcCCchHHHH
Q 004856 244 VELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVW-NIM--ISAYYQSGFPKESLE 320 (727)
Q Consensus 244 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~l--i~~~~~~g~~~~A~~ 320 (727)
.+.|+++.|...+.++++..+.....++ .++..+...|+.++|+..+++...++...+ ..+ ...|...|++++|++
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aie 123 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALA 123 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4455555555555555554322212222 445555555555555555555554422222 222 224444555555555
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC--
Q 004856 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK-- 398 (727)
Q Consensus 321 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-- 398 (727)
+|+++.+... -+...+..+...+...++.++|.+.+..+.+. .|+...+..++..+...++..+|.+.++++.+.
T Consensus 124 ly~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P 200 (822)
T PRK14574 124 LWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAP 200 (822)
T ss_pred HHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCC
Confidence 5555554321 12233334444555555555555555555443 222333333333333334443455555555432
Q ss_pred -ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH------HHHHHHHHH-----hcCCCh---HHHHHHHHHHHH
Q 004856 399 -TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFV------TIINILPAC-----VNIGAL---EHVKYLHGYSMK 463 (727)
Q Consensus 399 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------t~~~ll~a~-----~~~~~~---~~a~~~~~~~~~ 463 (727)
+...+..+..+..+.|-...|+++..+-... ..+... .....+..- .....+ +.+..-++.+..
T Consensus 201 ~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~ 279 (822)
T PRK14574 201 TSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLT 279 (822)
T ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHh
Confidence 2334444555555555555555444432211 011100 000011000 011122 222222222222
Q ss_pred -hCC-CchHhH-HH---HHHHHHHhcCCHHHHHHHHHhccCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC--
Q 004856 464 -LGL-NSLSSV-NT---AIFISYAKCGCIEMAGELFDEEKIDSK--DIITWNSMISAYAKHGDWSQCFKLYTQMKQSD-- 533 (727)
Q Consensus 464 -~~~-~~~~~~-~~---~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-- 533 (727)
.+- ++.... .. -.+-++.+.|++.++.+.|+.+..... ....-..+.++|...+++++|+.+|+++....
T Consensus 280 ~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~ 359 (822)
T PRK14574 280 RWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGK 359 (822)
T ss_pred hccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccc
Confidence 111 111111 11 122344455555555555555543211 11233344555555555555555555554321
Q ss_pred ---CCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC----------CCCC---hhHHHHHHHHHHhcCCHHHHHHHH
Q 004856 534 ---VRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYG----------YEPS---QEHYASMVNLLGRAGHMDEARELV 597 (727)
Q Consensus 534 ---~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~ 597 (727)
..++......|..++...+++++|..+++.+.+... -.|+ ...+..++..+...|++.+|++.+
T Consensus 360 ~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~l 439 (822)
T PRK14574 360 TFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKL 439 (822)
T ss_pred ccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 011222234555555555555555555555554200 0122 123333445555555555555555
Q ss_pred HhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 004856 598 KDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFL 666 (727)
Q Consensus 598 ~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 666 (727)
+++ ...| |...+..+...+...|....|++.++.+..++|++..+....+.++...|+|++|..+.+.+
T Consensus 440 e~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 440 EDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 555 2223 33444444455555555555555555555555555555555555555555555555554433
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.3e-14 Score=135.68 Aligned_cols=255 Identities=14% Similarity=0.121 Sum_probs=188.4
Q ss_pred CcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHHcCCCchhHHHHHHH
Q 004856 95 NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVE 174 (727)
Q Consensus 95 ~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 174 (727)
+..+|.+||+|+|+-...+.|.++|++-+....+.+..+||.+|.+-+-. .++.+..+|+...+.||..+.|++++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHH
Confidence 44577888888888888888888888888777788888888888765433 33677777777777777777666666
Q ss_pred hhhccCCCChhhhhhhccCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhH-HH
Q 004856 175 FYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLEL-GR 253 (727)
Q Consensus 175 ~y~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~-a~ 253 (727)
..++. |.++.|+. .|++++.+|++.|+.|.-.+|..+|...++.++..+ +.
T Consensus 282 c~akf--g~F~~ar~--------------------------aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as 333 (625)
T KOG4422|consen 282 CAAKF--GKFEDARK--------------------------AALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVAS 333 (625)
T ss_pred HHHHh--cchHHHHH--------------------------HHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhH
Confidence 66666 55554433 467888999999999999999999999988887754 44
Q ss_pred HHHHHHHHh--c--C----CCChhHHhHHHHHhhcCCChHHHHHHHhcCCCC-----------CeehHHHHHHHHHhcCC
Q 004856 254 IVHCVAVVS--D--F----CKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK-----------DRVVWNIMISAYYQSGF 314 (727)
Q Consensus 254 ~~~~~~~~~--g--~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~ 314 (727)
.+...+... | + +.|...+..-++.|.+..+.+-|.++-.-.... ...-|..+....++...
T Consensus 334 ~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es 413 (625)
T KOG4422|consen 334 SWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMES 413 (625)
T ss_pred HHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 444444432 2 2 224455667777888888888888876655432 22346667788888999
Q ss_pred chHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 004856 315 PKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCE 381 (727)
Q Consensus 315 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 381 (727)
.+.-+..|+.|.-.-+-|+..+...++++....+.++-..+++..++..|...+....--++..+++
T Consensus 414 ~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~ 480 (625)
T KOG4422|consen 414 IDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLAR 480 (625)
T ss_pred HHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhc
Confidence 9999999999998888899999999999999999999999999999988866555544444444443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.7e-11 Score=118.92 Aligned_cols=494 Identities=12% Similarity=0.092 Sum_probs=313.7
Q ss_pred HHHhhccCChhHHHHHHHHHHHHcCCCchhHHHHHHHhhhccCCCChhhhhhh-cc---CCCCCcccHHHHHHHHHhCCC
Q 004856 138 IRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI-QR---KFKDLKSRWNSLISLAVQNGK 213 (727)
Q Consensus 138 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~~~g~~~~a~~~-~~---~~~~~~~~~~~li~~~~~~g~ 213 (727)
-++.....+.+.|+-++...++.. +.....|.+|... ..++.|.++ .. ....+...|-+--..--.+|+
T Consensus 383 WKaAVelE~~~darilL~rAvecc-p~s~dLwlAlarL------etYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn 455 (913)
T KOG0495|consen 383 WKAAVELEEPEDARILLERAVECC-PQSMDLWLALARL------ETYENAKKVLNKAREIIPTDREIWITAAKLEEANGN 455 (913)
T ss_pred HHHHHhccChHHHHHHHHHHHHhc-cchHHHHHHHHHH------HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCC
Confidence 344444555555666666665543 3334444444333 445555555 32 233455556555555556666
Q ss_pred chhHHHHHHH----HHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCC--hhHHhHHHHHhhcCCChHHH
Q 004856 214 SEKSFELFKL----MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKD--LSVNTALLSMYSKLASLEDA 287 (727)
Q Consensus 214 ~~~A~~~~~~----m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A 287 (727)
.+...++..+ +...|+..+...|..=...|-..|.+-....+...++..|++.. ..+|+.-...|.+.+.++-|
T Consensus 456 ~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~ca 535 (913)
T KOG0495|consen 456 VDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECA 535 (913)
T ss_pred HHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHH
Confidence 6665555543 33456666666666655566555655555555555555554322 23444444455555555555
Q ss_pred HHHHhcCCCCCeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCC
Q 004856 288 KMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDY 367 (727)
Q Consensus 288 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 367 (727)
+.+|... ++. .+-+...|......--..|..+.-..+++.++... +-
T Consensus 536 rAVya~a-------------------------------lqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pk 582 (913)
T KOG0495|consen 536 RAVYAHA-------------------------------LQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PK 582 (913)
T ss_pred HHHHHHH-------------------------------Hhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-Cc
Confidence 5555443 332 11122233333333333444444444444444432 22
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004856 368 QVSVHNSLIDMYCECEDLNCARKIFDSVKTK---TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPA 444 (727)
Q Consensus 368 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 444 (727)
....|-....-+...|++..|+.++...-+. +...|-+-+..-..+.+++.|..+|.+.... .|+...|.--+..
T Consensus 583 ae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~ 660 (913)
T KOG0495|consen 583 AEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANL 660 (913)
T ss_pred chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHH
Confidence 2333444444555566666666666554432 3345666666666677777777777766553 4555555444444
Q ss_pred HhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHH
Q 004856 445 CVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCF 523 (727)
Q Consensus 445 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~ 523 (727)
--..++.++|.++++..++. ++.-...|-.+.+.+-+.++++.|.+.|..=....| .+..|-.+...--+.|+..+|.
T Consensus 661 er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR 739 (913)
T KOG0495|consen 661 ERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRAR 739 (913)
T ss_pred HHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHH
Confidence 44566777777777666654 234455677777888888999999998887333345 5568888888888889999999
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 004856 524 KLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFK 603 (727)
Q Consensus 524 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 603 (727)
.++++.+-++ +-|...|...|+.-.+.|..+.|..+..+..++ ++.+...|..-|.+..+.++-..+.+.+.+...
T Consensus 740 ~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce~- 815 (913)
T KOG0495|consen 740 SILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH- 815 (913)
T ss_pred HHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhccC-
Confidence 9999988764 347888999999999999999999999998875 566677888888888888888888888888754
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEE
Q 004856 604 PDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIE 681 (727)
Q Consensus 604 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 681 (727)
|+....++...+....+++.|...|.++++.+|++..++..+..-+...|.-++-.+++.+.... .++-|..|+.
T Consensus 816 -dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~a 890 (913)
T KOG0495|consen 816 -DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQA 890 (913)
T ss_pred -CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHH
Confidence 44455555566777888999999999999999999999999999999999998888888876554 2445556653
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.5e-14 Score=134.40 Aligned_cols=491 Identities=11% Similarity=0.047 Sum_probs=307.2
Q ss_pred HHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHH-HHHHhhccCChhHHHHHHHHHHHHcCCCchhHHHHHHHhhhccCC
Q 004856 103 LKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPF-VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDG 181 (727)
Q Consensus 103 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~~~ 181 (727)
.+-|.-+..+.+|+..|+-..+....|+...+-. +-..+.+...+..|...++..+..-...+..+.-.
T Consensus 208 aqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rik---------- 277 (840)
T KOG2003|consen 208 AQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIK---------- 277 (840)
T ss_pred HHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHH----------
Confidence 3456667778889999988888777777654322 22334455566666666665554322111111111
Q ss_pred CChhhhhhhccCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHH
Q 004856 182 GFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVV 261 (727)
Q Consensus 182 g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 261 (727)
..|.+--.|.+.|.++.|+..|+...+. .|+-.+-..++-++...|+.+..++.|..++.
T Consensus 278 ------------------il~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ 337 (840)
T KOG2003|consen 278 ------------------ILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLID 337 (840)
T ss_pred ------------------HHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhc
Confidence 1222333467889999999999988774 58888777777777778888999999988887
Q ss_pred hcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCCCCeehHH-----HHHHHHHhcC--CchHHHHHHHHHHHcCCCCCh
Q 004856 262 SDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWN-----IMISAYYQSG--FPKESLELLMCMVRSGFRADL 334 (727)
Q Consensus 262 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~ 334 (727)
....+|..- |.+..+ .|+....| -++.-+-+.. +.++++-.-.++..--+.||-
T Consensus 338 ip~~~dddk-------yi~~~d------------dp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~f 398 (840)
T KOG2003|consen 338 IPGEIDDDK-------YIKEKD------------DPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDF 398 (840)
T ss_pred CCCCCCccc-------ccCCcC------------CcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccch
Confidence 654444321 111111 01111111 1111111111 112222222222222222321
Q ss_pred hh-HHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHH----HHH-HH
Q 004856 335 FT-AIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSW----SSM-IK 408 (727)
Q Consensus 335 ~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~l-i~ 408 (727)
.. +...+..+......+.|.. .--.-..-|.+.|+++.|.+++.-...+|..+- |.| ..
T Consensus 399 a~g~dwcle~lk~s~~~~la~d---------------lei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l 463 (840)
T KOG2003|consen 399 AAGCDWCLESLKASQHAELAID---------------LEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCAL 463 (840)
T ss_pred hcccHHHHHHHHHhhhhhhhhh---------------hhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHH
Confidence 11 1111111111111111111 111122346788888888888777666543222 222 22
Q ss_pred HHHhc-CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHH
Q 004856 409 GYVTH-DQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIE 487 (727)
Q Consensus 409 ~~~~~-g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 487 (727)
-|.+- .++..|.+.-+...... +-+....+.--+.....|++++|...+.+.....-......||.= -.+...|+++
T Consensus 464 ~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnig-lt~e~~~~ld 541 (840)
T KOG2003|consen 464 RFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIG-LTAEALGNLD 541 (840)
T ss_pred HHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhc-ccHHHhcCHH
Confidence 23332 35556665555444321 222223322233345678888888888888776655555555532 3467889999
Q ss_pred HHHHHHHhccCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 004856 488 MAGELFDEEKID-SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMK 565 (727)
Q Consensus 488 ~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 565 (727)
+|++.|-++... ..++...-.+...|-...+..+|++++-+... +.| |+..+.-|...|-+.|+-..|.+.+-.--
T Consensus 542 eald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsy 619 (840)
T KOG2003|consen 542 EALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSY 619 (840)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcc
Confidence 999999886543 34566666788889999999999999988776 455 68889999999999999999998876544
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhhHHHHHHH-HHHcCCHHHHHHHHHHHHccCCCCcchH
Q 004856 566 ESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPDARVWGPLLSA-CKMHSETELAELTAEKLISMEPENAGNY 643 (727)
Q Consensus 566 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 643 (727)
. -++-+.++..-|...|....-+++|+.+|++. -+.|+..-|..++.. +++.|+++.|..+|+......|.|....
T Consensus 620 r--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldcl 697 (840)
T KOG2003|consen 620 R--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCL 697 (840)
T ss_pred c--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHH
Confidence 2 45667889888999999999999999999998 478999999999988 5788999999999999999999999999
Q ss_pred HHHHHHHHhcCChhHHHHHHH
Q 004856 644 VLLSNIYAAAGKWNGVAKMRT 664 (727)
Q Consensus 644 ~~l~~~~~~~g~~~~a~~~~~ 664 (727)
..|..++...|.. ++.++-+
T Consensus 698 kflvri~~dlgl~-d~key~~ 717 (840)
T KOG2003|consen 698 KFLVRIAGDLGLK-DAKEYAD 717 (840)
T ss_pred HHHHHHhccccch-hHHHHHH
Confidence 9999999888865 3444433
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-10 Score=117.59 Aligned_cols=438 Identities=13% Similarity=0.111 Sum_probs=348.8
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCC
Q 004856 217 SFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD 296 (727)
Q Consensus 217 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 296 (727)
=.+++++..+. .|+.+ .|-++.....+.+.|+.++..+++.- +.+.. |.-+|++...++.|.+++++..+
T Consensus 365 K~RVlRKALe~--iP~sv---~LWKaAVelE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaRe 434 (913)
T KOG0495|consen 365 KKRVLRKALEH--IPRSV---RLWKAAVELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKARE 434 (913)
T ss_pred HHHHHHHHHHh--CCchH---HHHHHHHhccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666553 35443 23345556667777888888888763 22333 44456667778999999988765
Q ss_pred ---CCeehHHHHHHHHHhcCCchHHHHHHHH----HHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCC-
Q 004856 297 ---KDRVVWNIMISAYYQSGFPKESLELLMC----MVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ- 368 (727)
Q Consensus 297 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~- 368 (727)
.+...|-+-...=-.+|+.+...+++.+ +...|+..+...|..=...|-..|.+-.+..+...++..|+...
T Consensus 435 ~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed 514 (913)
T KOG0495|consen 435 IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEED 514 (913)
T ss_pred hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccch
Confidence 3777887777777788999888888765 56779999999999999999999999999999999999887654
Q ss_pred -hhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004856 369 -VSVHNSLIDMYCECEDLNCARKIFDSVKTK---TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPA 444 (727)
Q Consensus 369 -~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 444 (727)
..+|..-.+.+.+.+.++-|+.+|....+- +...|...+..--..|..++...+|++....- +-....+......
T Consensus 515 ~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake 593 (913)
T KOG0495|consen 515 RKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKE 593 (913)
T ss_pred hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHH
Confidence 457888888899999999999999877653 55778887777778899999999999998862 2334455555666
Q ss_pred HhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 004856 445 CVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFK 524 (727)
Q Consensus 445 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 524 (727)
.-..|+...|+.+++.+.+.. +.+..++-+-+........++.|..+|.+.....|....|.--+....-.++.++|++
T Consensus 594 ~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHH
Confidence 677899999999999999876 4477888899999999999999999999988778888899888888888899999999
Q ss_pred HHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-
Q 004856 525 LYTQMKQSDVRPD-LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPF- 602 (727)
Q Consensus 525 ~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~- 602 (727)
++++.++ .-|+ ...|..+.+.+-+.++++.|...|..=.+ .++-.+..|-.|.+.=.+.|.+-+|..++++...
T Consensus 673 llEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 673 LLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 9999988 4576 56788889999999999999998876553 2333466888888888999999999999999842
Q ss_pred CC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCC------------------------------CcchHHHHHHHHH
Q 004856 603 KP-DARVWGPLLSACKMHSETELAELTAEKLISMEPE------------------------------NAGNYVLLSNIYA 651 (727)
Q Consensus 603 ~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~------------------------------~~~~~~~l~~~~~ 651 (727)
.| +...|...+..-.+.|+.+.|..+..++++--|. |+.....++.++.
T Consensus 749 NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw 828 (913)
T KOG0495|consen 749 NPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFW 828 (913)
T ss_pred CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHH
Confidence 34 6779999999999999999999999988875553 3556667788888
Q ss_pred hcCChhHHHHHHHHHHhCC
Q 004856 652 AAGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 652 ~~g~~~~a~~~~~~m~~~~ 670 (727)
...+++.|++.|.+..+.+
T Consensus 829 ~e~k~~kar~Wf~Ravk~d 847 (913)
T KOG0495|consen 829 SEKKIEKAREWFERAVKKD 847 (913)
T ss_pred HHHHHHHHHHHHHHHHccC
Confidence 9999999999998876654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-12 Score=135.16 Aligned_cols=603 Identities=11% Similarity=0.029 Sum_probs=309.6
Q ss_pred HHHHHhhcCCCchhhHHHHHHHHHccCChhHHHHHHhcCCCC----CcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCC
Q 004856 53 ARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP----NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMY 128 (727)
Q Consensus 53 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~----~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~ 128 (727)
+.+ ...|+.||-++|.+||..||..|+++.|- +|..|.-+ +...++.++.+..+.++.+.+. .
T Consensus 14 a~~-e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------e 80 (1088)
T KOG4318|consen 14 ALH-EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------E 80 (1088)
T ss_pred HHH-HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------C
Confidence 344 67788888899999999999999988888 77776532 2234555555555555544443 3
Q ss_pred CCcccHHHHHHHhhccCChhHHHHHHHHHHH-------HcC-----------------CCch----------hHHHHHHH
Q 004856 129 PAEDTYPFVIRSCSCLLDFISGEKIHAQVVK-------LGF-----------------DSFD----------DVGDALVE 174 (727)
Q Consensus 129 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-------~~~-----------------~~~~----------~~~~~li~ 174 (727)
|.+.||..|+++|+..||+..-..+-+.+.. .|. -||. ..|..+++
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred CchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555554432111111110 010 0110 11222222
Q ss_pred hhhccC------------------CCChhhhhhh-ccCC-CCCcccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCChh
Q 004856 175 FYIKCD------------------GGFENEKGMI-QRKF-KDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSG 234 (727)
Q Consensus 175 ~y~~~~------------------~g~~~~a~~~-~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 234 (727)
...++. ...+++-... .... .++..+|.+++.+-.-+|+.+.|..++.+|++.|++.+.+
T Consensus 161 ll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 161 LLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred HHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 221110 0111111111 1111 3677778888888888888899999999998888888888
Q ss_pred hHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCCCCeehHHHHHHHHHhcCC
Q 004856 235 TLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGF 314 (727)
Q Consensus 235 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 314 (727)
-|-.++-+ .++...+..+...|...|+.|+..++.--+-.+.++|....+....+.-.--....+..+..+...+..
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~ 317 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKR 317 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHH
Confidence 77777765 777888888888888888888888887766666665543322221111000011122222222111111
Q ss_pred ch-----HHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCC---CCChhHHHHHHHHHHhc----
Q 004856 315 PK-----ESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS---DYQVSVHNSLIDMYCEC---- 382 (727)
Q Consensus 315 ~~-----~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~---~~~~~~~~~li~~~~~~---- 382 (727)
.+ -....+.+..-.|+.-....|..... ....|.-+..+++-..+..--. ..++..+..++.-|.+.
T Consensus 318 l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~ 396 (1088)
T KOG4318|consen 318 LRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERH 396 (1088)
T ss_pred HHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhh
Confidence 11 11111222222232222222221111 1123443444444333321110 11122222222222221
Q ss_pred ------------------CCHHHHHHHHhcCCC----------------CChhH-----------HHHHHHHHHhcCChH
Q 004856 383 ------------------EDLNCARKIFDSVKT----------------KTVVS-----------WSSMIKGYVTHDQSL 417 (727)
Q Consensus 383 ------------------g~~~~A~~~~~~~~~----------------~~~~~-----------~~~li~~~~~~g~~~ 417 (727)
.+..+..+....... +.... -+.++..++..-+..
T Consensus 397 ~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~l 476 (1088)
T KOG4318|consen 397 ICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKL 476 (1088)
T ss_pred HHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 111112222211110 00011 123444444444444
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHh--CCCchHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 004856 418 EALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL--GLNSLSSVNTAIFISYAKCGCIEMAGELFDE 495 (727)
Q Consensus 418 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 495 (727)
+++..-+.....-+ | ..|..++.-|+....++.|..+.++.... .+..+..-+..+.+.+.+.+...++..++.+
T Consensus 477 K~l~~~ekye~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e 553 (1088)
T KOG4318|consen 477 KILCDEEKYEDLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYE 553 (1088)
T ss_pred HHHHHHHHHHHHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhh
Confidence 44433333322211 1 45778888888888888888887776543 3345666778888888899999999888888
Q ss_pred ccCC---CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC------------------------------CCChHHH
Q 004856 496 EKID---SKD-IITWNSMISAYAKHGDWSQCFKLYTQMKQSDV------------------------------RPDLITF 541 (727)
Q Consensus 496 ~~~~---~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------------------------------~p~~~t~ 541 (727)
+++. .|+ ..+.--+++..+..|+.+...++++-+...|+ +|.+...
T Consensus 554 ~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~ 633 (1088)
T KOG4318|consen 554 DKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDL 633 (1088)
T ss_pred hhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhhhhcchHHHHHhcCChHHH
Confidence 7643 232 22334455555666666666665555544332 2222222
Q ss_pred HHHHHH---------------------HHhcCCHHHHHHHHHHh--HHhcC---------CCC---------ChhHHHHH
Q 004856 542 LGLLTA---------------------CVNAGLVEEGRIIFKEM--KESYG---------YEP---------SQEHYASM 580 (727)
Q Consensus 542 ~~ll~~---------------------~~~~g~~~~a~~~~~~~--~~~~~---------~~p---------~~~~~~~l 580 (727)
..+.+. |.+.|++.++..+.+.= .-+.+ +.| +......|
T Consensus 634 e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRL 713 (1088)
T KOG4318|consen 634 EGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRL 713 (1088)
T ss_pred HHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccccHHHHHHHHhHhHHHHHH
Confidence 222222 22222222222222100 00000 000 11122346
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC---CHHHHHHHHHHHHccCCC---CcchHHHHHHHHHhcC
Q 004856 581 VNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHS---ETELAELTAEKLISMEPE---NAGNYVLLSNIYAAAG 654 (727)
Q Consensus 581 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g---~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g 654 (727)
+..|.+.|+++.|..++.+++..|+..+...|...+.++. ++.++....+++.++.|. +...|.-.+....+..
T Consensus 714 L~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~ 793 (1088)
T KOG4318|consen 714 LQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTE 793 (1088)
T ss_pred HHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHH
Confidence 7788899999999999999988888888777777766544 555666666666665543 3344444444555555
Q ss_pred ChhHHHHHHHHHHhCCCccCC
Q 004856 655 KWNGVAKMRTFLRDRGLKKTP 675 (727)
Q Consensus 655 ~~~~a~~~~~~m~~~~~~~~~ 675 (727)
..+.|.+.+.+..+....++.
T Consensus 794 qkkaAkk~f~r~eeq~~v~ta 814 (1088)
T KOG4318|consen 794 QKKAAKKCFERLEEQLTVSTA 814 (1088)
T ss_pred HHHHHHHHHHHHHHccCCCcH
Confidence 666788899988887554443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-12 Score=134.63 Aligned_cols=524 Identities=12% Similarity=0.020 Sum_probs=285.9
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHHcCCCchhHHHHHHHhhhccCCCChhhhhhhccCCCC
Q 004856 117 LVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKD 196 (727)
Q Consensus 117 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~~~g~~~~a~~~~~~~~~ 196 (727)
.++-.|...|+.|+.+||..+|.-||..|+++.|- ++..|.-..++....++++++...... ++.+.+. .|
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~A--nd~Enpk------ep 81 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEA--NDAENPK------EP 81 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhccccc--ccccCCC------CC
Confidence 34455555666666666666666666666666665 666555555555555666666555544 4433332 34
Q ss_pred CcccHHHHHHHHHhCCCchhHHHHHHH-HH-------hCCCCCChhhHHHHHHHhcccC-C------hhHHHHHHHHHHH
Q 004856 197 LKSRWNSLISLAVQNGKSEKSFELFKL-MR-------MEGAEFDSGTLINLLRSTVELK-S------LELGRIVHCVAVV 261 (727)
Q Consensus 197 ~~~~~~~li~~~~~~g~~~~A~~~~~~-m~-------~~g~~p~~~t~~~ll~~~~~~~-~------~~~a~~~~~~~~~ 261 (727)
...+|+.|..+|.+.|+... ++..++ |. ..|+..-..-|-..+.+|-..- + ..--+.+++..++
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred chhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666544 222222 21 1222211122222222221110 0 0111233344444
Q ss_pred hcCCCChhHHh--H--HHHHhhc-CCChHHHHHHHhcCCC-CCeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChh
Q 004856 262 SDFCKDLSVNT--A--LLSMYSK-LASLEDAKMLFDKMSD-KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLF 335 (727)
Q Consensus 262 ~g~~~~~~~~~--~--li~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 335 (727)
.+..-.+..++ . ++.-... ...+++-..+.....+ ++..+|.+++.+-..+|+.+.|..++.+|.+.|++.+.+
T Consensus 161 ll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 161 LLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred HHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 43111111111 0 1221111 2234444444444444 799999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC
Q 004856 336 TAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQ 415 (727)
Q Consensus 336 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 415 (727)
-|..++-+ .++....+.+..-|...|+.|+..|+...+-...+.|....+.+..+.-..-....+..+..+...+.+
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~ 317 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKR 317 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHH
Confidence 99998876 888899999999999999999999998887777776653333322211111112223333333111111
Q ss_pred h-----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCC---CchHhHHHHHHHHHHhcCCHH
Q 004856 416 S-----LEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL---NSLSSVNTAIFISYAKCGCIE 487 (727)
Q Consensus 416 ~-----~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 487 (727)
. .-....+++..-.|+......|..... ..+.|.-+...++-..+..... ..++..+..++.-|
T Consensus 318 l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqy------- 389 (1088)
T KOG4318|consen 318 LRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQY------- 389 (1088)
T ss_pred HHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHH-------
Confidence 1 122223333333344333333333222 2336666666666655543211 11233333333333
Q ss_pred HHHHHHHhccCCCCCH-HHHHHHHHHHHH---------------cCChHHHHHHHHHHHH----CCCCC-------ChHH
Q 004856 488 MAGELFDEEKIDSKDI-ITWNSMISAYAK---------------HGDWSQCFKLYTQMKQ----SDVRP-------DLIT 540 (727)
Q Consensus 488 ~A~~~~~~~~~~~~~~-~~~~~li~~~~~---------------~g~~~~A~~~~~~m~~----~g~~p-------~~~t 540 (727)
|.+.. .+.. ..++ .-.+... .-+...++.-+..... +-..| -...
T Consensus 390 -----Frr~e--~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi 461 (1088)
T KOG4318|consen 390 -----FRRIE--RHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDI 461 (1088)
T ss_pred -----HHHHH--hhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHH
Confidence 33322 1111 1111 1111111 1111111111111110 00111 1223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCCHhhHHHHHHH
Q 004856 541 FLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP-----FKPDARVWGPLLSA 615 (727)
Q Consensus 541 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~ll~~ 615 (727)
-+.++..|++.-+..+++..-+..... -+ ...|..||+.+......++|..+.++.. +.-|...+..+.+.
T Consensus 462 ~~ql~l~l~se~n~lK~l~~~ekye~~-lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dL 537 (1088)
T KOG4318|consen 462 ANQLHLTLNSEYNKLKILCDEEKYEDL-LF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDL 537 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHH
Confidence 445566666666666666555444432 22 2678999999999999999999999883 33455677788888
Q ss_pred HHHcCCHHHHHHHHHHHHcc---CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 004856 616 CKMHSETELAELTAEKLISM---EPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKK 673 (727)
Q Consensus 616 ~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 673 (727)
+.+++....+..+++.+.+. .|.....+..+.+.....|+.+...+..+-+...|+..
T Consensus 538 L~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 538 LQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 88999999999988888762 34345566677778888899999999999888888765
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.6e-11 Score=124.26 Aligned_cols=536 Identities=12% Similarity=0.048 Sum_probs=269.2
Q ss_pred CCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHHcCCCchhHHHHHHHhhhccCCCChhhhhh
Q 004856 110 GEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGM 189 (727)
Q Consensus 110 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~~~g~~~~a~~ 189 (727)
|+.++|..++.+..+. .+-+...|.+|-..+-..|+.+.+...+-.+.-.. +.|...|-.+-....+. |.+..|+-
T Consensus 153 g~~eeA~~i~~EvIkq-dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~--~~i~qA~~ 228 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQ-DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQL--GNINQARY 228 (895)
T ss_pred CCHHHHHHHHHHHHHh-CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhc--ccHHHHHH
Confidence 6677777776666654 22344466666666666666666555443222222 33446666666666666 66666665
Q ss_pred h-ccCCCCCcccHHHH---HHHHHhCCCchhHHHHHHHHHhCCCCCChhhHH----HHHHHhcccCChhHHHHHHHHHHH
Q 004856 190 I-QRKFKDLKSRWNSL---ISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLI----NLLRSTVELKSLELGRIVHCVAVV 261 (727)
Q Consensus 190 ~-~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~----~ll~~~~~~~~~~~a~~~~~~~~~ 261 (727)
. .+..+.+..-|-.+ +..|-+.|+...|++.|.++.+...+.|-.-+. .+++.+...++-+.|.+.++..+.
T Consensus 229 cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 229 CYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 5 54444333333332 345566666666666666666543211222222 223334444444555555555554
Q ss_pred hc-CCCChhHHhHHHHHhhcCCChHHHHHHHhcCCC----CCeeh----------------------HH----HHHHHHH
Q 004856 262 SD-FCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD----KDRVV----------------------WN----IMISAYY 310 (727)
Q Consensus 262 ~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~----------------------~~----~li~~~~ 310 (727)
.+ -..+...++.++.+|.+...++.|......+.. +|..- |+ -++-++.
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 22 122334455566666666666666555544432 11111 11 1122222
Q ss_pred hcCCchHHHHHHHHHHHcCCCC--ChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHH
Q 004856 311 QSGFPKESLELLMCMVRSGFRA--DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCA 388 (727)
Q Consensus 311 ~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 388 (727)
+....+....+........+.| +...|.-+..++...|.+..|..++..+...-..-+..+|-.+..+|...|.+++|
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 3333333333333333333222 33445555566666666666666666665554444455566666666666666666
Q ss_pred HHHHhcCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHhcCCChHHHHHH
Q 004856 389 RKIFDSVKTKTV---VSWSSMIKGYVTHDQSLEALRLFSEMKL--------EGVEVDFVTIINILPACVNIGALEHVKYL 457 (727)
Q Consensus 389 ~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 457 (727)
.+.|+.+...++ ..--.|...+.+.|+.++|++.+..+.. .+..|+..........+.+.|+.++-..+
T Consensus 469 ~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t 548 (895)
T KOG2076|consen 469 IEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINT 548 (895)
T ss_pred HHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 666665543322 2223344455556666666666665431 12333333333344445555555543333
Q ss_pred HHHHHHhC-----C-----------------CchHhHHHHHHHHHHhcCCHHHHHHHHHh--------ccCCCCCHHHH-
Q 004856 458 HGYSMKLG-----L-----------------NSLSSVNTAIFISYAKCGCIEMAGELFDE--------EKIDSKDIITW- 506 (727)
Q Consensus 458 ~~~~~~~~-----~-----------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~--------~~~~~~~~~~~- 506 (727)
-..++... + .........++.+-.+.++......-... .. .....-|
T Consensus 549 ~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~--~Lsiddwf 626 (895)
T KOG2076|consen 549 ASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELR--GLSIDDWF 626 (895)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhc--cCcHHHHH
Confidence 32222110 0 00011111122222222221111111000 00 1122223
Q ss_pred ---HHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChH---H-HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC---hh
Q 004856 507 ---NSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLI---T-FLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS---QE 575 (727)
Q Consensus 507 ---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~---t-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~ 575 (727)
.-++.++++.+++++|+.+...+.+..+.- +.. . =...+.++...+++..|...++.|...++...+ ..
T Consensus 627 el~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~ 706 (895)
T KOG2076|consen 627 ELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLN 706 (895)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 345667888889999998888877643221 222 2 233456667788899999888888876444333 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhhHHHHHHH--HHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHH
Q 004856 576 HYASMVNLLGRAGHMDEARELVKDM-PFKPDARVWGPLLSA--CKMHSETELAELTAEKLISMEPENAGNYVLLSNIYA 651 (727)
Q Consensus 576 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 651 (727)
.|+...+.+.+.|+-.--.+++... ...|+......++.+ ....+.+.-|.+.+-++....|++|.+-..++-++.
T Consensus 707 l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafi 785 (895)
T KOG2076|consen 707 LWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFI 785 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 5565556666666544444444443 333444333334433 556777888999999999999988877666665544
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.5e-10 Score=118.89 Aligned_cols=576 Identities=12% Similarity=0.039 Sum_probs=302.2
Q ss_pred CChhHHHHHHhcCCC---CCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCc-ccHHHHHHHhhccCChhHHHHHH
Q 004856 79 GLLSLSQQVFNSITS---PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAE-DTYPFVIRSCSCLLDFISGEKIH 154 (727)
Q Consensus 79 g~~~~A~~~f~~~~~---~~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~ 154 (727)
|++++|.+++.++.. .+...|-+|-..|-+.|+.+++...+-.. ....|.. .-|..+-.-....|++..|.-.+
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llA--AHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLA--AHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHH--HhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 777777777776652 35557777777777777777776654332 2233333 35555555566677777777777
Q ss_pred HHHHHHcCCCchhHHHHHHHhhhccCCCChhhhhhh-ccCCCCCc-ccH-------HHHHHHHHhCCCchhHHHHHHHHH
Q 004856 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI-QRKFKDLK-SRW-------NSLISLAVQNGKSEKSFELFKLMR 225 (727)
Q Consensus 155 ~~~~~~~~~~~~~~~~~li~~y~~~~~g~~~~a~~~-~~~~~~~~-~~~-------~~li~~~~~~g~~~~A~~~~~~m~ 225 (727)
..+++...+ +....---..+|-+. |+...|..- .++.+.+. +.| ..++..|...++-+.|++.++...
T Consensus 231 ~rAI~~~p~-n~~~~~ers~L~~~~--G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 231 SRAIQANPS-NWELIYERSSLYQKT--GDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHhcCCc-chHHHHHHHHHHHHh--ChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 777766532 222222234556666 776666655 44332221 222 123445555565566776666655
Q ss_pred hCC-CCCChhhHHHHHHHhcccCChhHHHHHHHHHHHh---------------------------cCCCChhHHhHHHHH
Q 004856 226 MEG-AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVS---------------------------DFCKDLSVNTALLSM 277 (727)
Q Consensus 226 ~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---------------------------g~~~~~~~~~~li~~ 277 (727)
..+ -.-+..+++.++..+......+.+.......... +..++..+. .+.-+
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~ic 386 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMIC 386 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhh
Confidence 421 1223334555555555555555544444333331 112222221 11112
Q ss_pred hh--cCCChHHHHHHHhcCC----CCCeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChH
Q 004856 278 YS--KLASLEDAKMLFDKMS----DKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIE 351 (727)
Q Consensus 278 ~~--~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 351 (727)
+. +.+...+++.-|-... ..++..|.-+..+|.+.|++.+|+.+|..+...-.--+...|..+..++-..|..+
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 22 2233333333322211 12455677778888888888888888888876644445667777888888888888
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChh-----HH-------HHHHHHHHhcCChHHH
Q 004856 352 WGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVV-----SW-------SSMIKGYVTHDQSLEA 419 (727)
Q Consensus 352 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~~-------~~li~~~~~~g~~~~A 419 (727)
+|.+.+..++... +.+..+-..|...|-+.|+.++|.+.+..+..+|.. .| -.....+.+.|+.++=
T Consensus 467 ~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 467 EAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred HHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence 8888888887664 334556667777788888888888888887766521 11 1223445566766654
Q ss_pred HHHHHHHHHCC----------------------CCCCHHHHHHHHHHHhcCCChHHHHHH------HHHHHHhCCCchH-
Q 004856 420 LRLFSEMKLEG----------------------VEVDFVTIINILPACVNIGALEHVKYL------HGYSMKLGLNSLS- 470 (727)
Q Consensus 420 ~~~~~~m~~~g----------------------~~p~~~t~~~ll~a~~~~~~~~~a~~~------~~~~~~~~~~~~~- 470 (727)
+..-..|.... ..-...+.-.++.+-.+.++....++- .......++..+.
T Consensus 546 i~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddw 625 (895)
T KOG2076|consen 546 INTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDW 625 (895)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHH
Confidence 44433332211 111122222233333333332211111 1111223333322
Q ss_pred -hHHHHHHHHHHhcCCHHHHHHHHHhccCC----CCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHC-C--CCCC-h
Q 004856 471 -SVNTAIFISYAKCGCIEMAGELFDEEKID----SKDI---ITWNSMISAYAKHGDWSQCFKLYTQMKQS-D--VRPD-L 538 (727)
Q Consensus 471 -~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--~~p~-~ 538 (727)
..+.-++..+++.+++++|+.+...+... .++. ..=..++.+....+++..|...++.|... + ..|. .
T Consensus 626 fel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~ 705 (895)
T KOG2076|consen 626 FELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQL 705 (895)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 34556677788888888888877764421 1111 12234555666778888888888877754 1 1222 2
Q ss_pred HHHHHHHHHHHh-----------------------------------cCCHHHHHHHHHHhHHhcCCCCChhHHHH-HHH
Q 004856 539 ITFLGLLTACVN-----------------------------------AGLVEEGRIIFKEMKESYGYEPSQEHYAS-MVN 582 (727)
Q Consensus 539 ~t~~~ll~~~~~-----------------------------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~-li~ 582 (727)
..|+...+.+.+ .+.+..|+..+-..... .|+....+. |.-
T Consensus 706 ~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~---~pd~Pl~nl~lgl 782 (895)
T KOG2076|consen 706 NLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ---NPDSPLINLCLGL 782 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHh---CCCCcHHHHHHHH
Confidence 233323333333 33445555544444432 344222221 111
Q ss_pred HHH----------hcCCHHHHHHHHHhC-CC-CC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---------
Q 004856 583 LLG----------RAGHMDEARELVKDM-PF-KP--DARVWGPLLSACKMHSETELAELTAEKLISMEPEN--------- 639 (727)
Q Consensus 583 ~~~----------~~g~~~~A~~~~~~~-~~-~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~--------- 639 (727)
++. |.-..-....++.+. .. .+ ...++..+..+|...|-...|+..|++++++.|.+
T Consensus 783 afih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~ 862 (895)
T KOG2076|consen 783 AFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNY 862 (895)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcc
Confidence 111 111122333333332 11 11 33455556666777777777777777777765432
Q ss_pred ---cchHHHHHHHHHhcCChhHHHHHHH
Q 004856 640 ---AGNYVLLSNIYAAAGKWNGVAKMRT 664 (727)
Q Consensus 640 ---~~~~~~l~~~~~~~g~~~~a~~~~~ 664 (727)
..+-.+|.-+|.++|+.+-|.+++.
T Consensus 863 dLrkeAA~NL~LIY~~SGn~~lArqil~ 890 (895)
T KOG2076|consen 863 DLRKEAAYNLHLIYKKSGNMQLARQILE 890 (895)
T ss_pred cHHHHHHhhhhhhhccCCcHHHHHHHHH
Confidence 1233355557777777777776665
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-14 Score=144.44 Aligned_cols=256 Identities=16% Similarity=0.134 Sum_probs=113.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCH
Q 004856 408 KGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN-ILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCI 486 (727)
Q Consensus 408 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 486 (727)
..+.+.|++++|++++++.......|+...|.. +...+-..++.+.|...++.+...+.. +...+..++.. ...+++
T Consensus 16 ~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 16 RLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccccc
Confidence 334444555555555543332221233333322 222333445555555555555544322 44455555555 677888
Q ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 004856 487 EMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSD-VRPDLITFLGLLTACVNAGLVEEGRIIFKEMK 565 (727)
Q Consensus 487 ~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 565 (727)
++|..++...-...++...+..++..+.+.++++++.+++++..... .+++...|..+...+.+.|+.++|++.+++..
T Consensus 94 ~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al 173 (280)
T PF13429_consen 94 EEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL 173 (280)
T ss_dssp ------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888887654335677778888899999999999999999987532 24467778888999999999999999999999
Q ss_pred HhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcch
Q 004856 566 ESYGYEPS-QEHYASMVNLLGRAGHMDEARELVKDMP--FKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGN 642 (727)
Q Consensus 566 ~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 642 (727)
+. .|+ ......++..+...|+.+++.++++... ...|+..|..+..++...|+.++|...++++.+..|+|+..
T Consensus 174 ~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~ 250 (280)
T PF13429_consen 174 EL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLW 250 (280)
T ss_dssp HH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHH
T ss_pred Hc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccc
Confidence 65 564 7788899999999999999888887761 23466788889899999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 004856 643 YVLLSNIYAAAGKWNGVAKMRTFLRD 668 (727)
Q Consensus 643 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 668 (727)
...+++++...|+.++|.+++++...
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999887643
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.8e-11 Score=119.33 Aligned_cols=405 Identities=13% Similarity=0.047 Sum_probs=232.6
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHHhCCCCCC-hhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCC-hhHHhHHHHHhh
Q 004856 202 NSLISLAVQNGKSEKSFELFKLMRMEGAEFD-SGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKD-LSVNTALLSMYS 279 (727)
Q Consensus 202 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~ 279 (727)
-...+-|.++|++++|++.+.+..+ ..|| +.-|...-.+|...|+++...+--...++.. |+ +.++..-..++-
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHE 194 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHH
Confidence 3445668889999999999999887 4688 4555556666678899988888777777653 33 334444556677
Q ss_pred cCCChHHHHHHHhcCCCCCeehHHHHHHHHHhcCCchHHHHHHH--------HHHH-cC--CCCChhhHHHHHHHhhcCC
Q 004856 280 KLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLM--------CMVR-SG--FRADLFTAIAAVSSISTMK 348 (727)
Q Consensus 280 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~-~g--~~p~~~t~~~ll~~~~~~~ 348 (727)
..|++++|+.-. +-.++..++....-.--+.+++. +-.+ .+ +.|......+.+..+...-
T Consensus 195 ~lg~~~eal~D~---------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~ 265 (606)
T KOG0547|consen 195 QLGKFDEALFDV---------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP 265 (606)
T ss_pred hhccHHHHHHhh---------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc
Confidence 777777765321 22223333322222222222222 2112 11 3355544444444432210
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh-cCCHHHHHHHHhcC-------CCCC---h------hHHHHHHHHHH
Q 004856 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCE-CEDLNCARKIFDSV-------KTKT---V------VSWSSMIKGYV 411 (727)
Q Consensus 349 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~-------~~~~---~------~~~~~li~~~~ 411 (727)
... +...+-+.|...-..+=..+.. ...+..|...+.+- ...+ . .+......-+.
T Consensus 266 ~~~--------~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~f 337 (606)
T KOG0547|consen 266 KPL--------FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHF 337 (606)
T ss_pred ccc--------ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhh
Confidence 000 0000000111111111111111 01222232222211 1111 1 11111112223
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHH
Q 004856 412 THDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGE 491 (727)
Q Consensus 412 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 491 (727)
-.|+.-.|...|+..+.....++.. |..+..+ |....+.++-..
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~-----------------------------------y~d~~~~~~~~~ 381 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAA-----------------------------------YADENQSEKMWK 381 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccchH-HHHHHHH-----------------------------------HhhhhccHHHHH
Confidence 3455555555565555543222221 3333333 444445555555
Q ss_pred HHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC
Q 004856 492 LFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYG 569 (727)
Q Consensus 492 ~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 569 (727)
.|+......| |..+|..-...+.-.+++++|..=|++.+. +.| +...|..+.-+..+.+.++++...|++..++
T Consensus 382 ~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-- 457 (606)
T KOG0547|consen 382 DFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-- 457 (606)
T ss_pred HHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 5554332222 444555555555566778888888888887 556 4667777777777888999999999998875
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---------HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 004856 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPD---------ARVWGPLLSACKMHSETELAELTAEKLISMEPEN 639 (727)
Q Consensus 570 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 639 (727)
++..+++|+.....+...+++++|.+.++.. .+.|+ +.+...++-. .-.+++..|+.+++++++++|..
T Consensus 458 FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkc 536 (606)
T KOG0547|consen 458 FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKC 536 (606)
T ss_pred CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchH
Confidence 5555778888888999999999999998877 34443 2222333322 23489999999999999999999
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004856 640 AGNYVLLSNIYAAAGKWNGVAKMRTFLRD 668 (727)
Q Consensus 640 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 668 (727)
..+|..|+.+-.+.|+.++|+++|++...
T Consensus 537 e~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 537 EQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999997543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-11 Score=118.88 Aligned_cols=436 Identities=11% Similarity=0.070 Sum_probs=271.4
Q ss_pred HHHHHhCCCchhHHHHHHHHHhCCCCCChhhHH-HHHHHhcccCChhHHHHHHHHHHHhcCCCCh----hHHhHHHHHhh
Q 004856 205 ISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLI-NLLRSTVELKSLELGRIVHCVAVVSDFCKDL----SVNTALLSMYS 279 (727)
Q Consensus 205 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~ 279 (727)
..-|..+....+|+..++-+.+..+.|+.-... .+-..+.+.+.+..|.+.|+..+..-+..+. ...+.+.-.+.
T Consensus 208 aqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfi 287 (840)
T KOG2003|consen 208 AQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFI 287 (840)
T ss_pred HHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEE
Confidence 345666778889999999988888778765442 2344566777788888888877765433322 22333334556
Q ss_pred cCCChHHHHHHHhcCCC--CCeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHH
Q 004856 280 KLASLEDAKMLFDKMSD--KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMH 357 (727)
Q Consensus 280 ~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 357 (727)
+.|.++.|...|+...+ ||..+--.|+-++..-|+.++..+.|.+|..-...||..-|. +..
T Consensus 288 q~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi-------~~~--------- 351 (840)
T KOG2003|consen 288 QAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYI-------KEK--------- 351 (840)
T ss_pred ecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCccccc-------CCc---------
Confidence 67777777777776543 454443444445555666777777777776544344433221 000
Q ss_pred HHHHHhCCCCChhHHHHHH-----HHHHhcC--CHHH----HHHHHhcCCCCChh---HHH------------------H
Q 004856 358 ANVLRNGSDYQVSVHNSLI-----DMYCECE--DLNC----ARKIFDSVKTKTVV---SWS------------------S 405 (727)
Q Consensus 358 ~~~~~~g~~~~~~~~~~li-----~~~~~~g--~~~~----A~~~~~~~~~~~~~---~~~------------------~ 405 (727)
-.|+....+--+ .-.-+.. +.++ |.++..-+..++-. -|. .
T Consensus 352 -------ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ 424 (840)
T KOG2003|consen 352 -------DDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEIN 424 (840)
T ss_pred -------CCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhh
Confidence 011111111111 0011110 1111 11222222222210 010 1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhc
Q 004856 406 MIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN--ILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC 483 (727)
Q Consensus 406 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~--ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 483 (727)
-...|.++|+++.|+++++-.....-+.-...-+. .+.-.....++..|.++-+...... ..+....+.-.+.-...
T Consensus 425 ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~n 503 (840)
T KOG2003|consen 425 KAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFAN 503 (840)
T ss_pred HHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeec
Confidence 12457899999999999988876543322222222 2222223346677777766555432 11222222122223457
Q ss_pred CCHHHHHHHHHhccCCCCCHHHHHHH---HHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 004856 484 GCIEMAGELFDEEKIDSKDIITWNSM---ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560 (727)
Q Consensus 484 g~~~~A~~~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 560 (727)
|++++|.+.+.+.. ..|..+-.+| .-.+-..|+.++|++.|-++..- +..+...+..+.+.|....+...|+++
T Consensus 504 gd~dka~~~ykeal--~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 504 GDLDKAAEFYKEAL--NNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred CcHHHHHHHHHHHH--cCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 99999999999976 4444433333 33567889999999999888752 234677788889999999999999999
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004856 561 FKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPE 638 (727)
Q Consensus 561 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 638 (727)
+..... -++.|+.+...|.+.|-+.|+-..|.++.-+. ..-| +..+...|..-|....-+++++.+++++--+.|+
T Consensus 581 ~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~ 658 (840)
T KOG2003|consen 581 LMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPN 658 (840)
T ss_pred HHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc
Confidence 987764 35556889999999999999999999886554 4333 5566666666688888899999999999999996
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 639 NAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 639 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
-..--..++.++.+.|++..|.++++....+
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 5555556777888999999999999987655
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.7e-11 Score=115.83 Aligned_cols=194 Identities=14% Similarity=0.145 Sum_probs=156.3
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHH
Q 004856 470 SSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTA 547 (727)
Q Consensus 470 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~ 547 (727)
+.+...+.+.|+-.++.++|...|++.....| ....|+.|..-|...++...|++.+++.++ +.| |...|..|.++
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQa 407 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQA 407 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHH
Confidence 34556666777888888888888888554444 567899999999999999999999999998 556 78899999999
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHhhHHHHHHHHHHcCCHHH
Q 004856 548 CVNAGLVEEGRIIFKEMKESYGYEP-SQEHYASMVNLLGRAGHMDEARELVKDM--PFKPDARVWGPLLSACKMHSETEL 624 (727)
Q Consensus 548 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~ 624 (727)
|.-.+...-|+-+|++... ++| |...|.+|.+.|.+.+++++|++.|.+. ..+.+...+..|...+.+.++.++
T Consensus 408 Yeim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred HHHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999884 455 4779999999999999999999999887 223455788888889999999999
Q ss_pred HHHHHHHHHc-------cCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004856 625 AELTAEKLIS-------MEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRD 668 (727)
Q Consensus 625 A~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 668 (727)
|.+.+++-++ .+|....+...|+.-+.+.+++++|..+......
T Consensus 485 Aa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 485 AAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 9999998887 3343344555677788899999999887765433
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.3e-09 Score=103.36 Aligned_cols=265 Identities=11% Similarity=0.108 Sum_probs=178.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHH---hcCCChHHHHHHHHHHHHhCCCch
Q 004856 400 VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF-------VTIINILPAC---VNIGALEHVKYLHGYSMKLGLNSL 469 (727)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~---~~~~~~~~a~~~~~~~~~~~~~~~ 469 (727)
-.+|--.+..--..|+.+...++|++.... ++|-. ..|.-+=-+| ....+.+.++++++..++ -++..
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHk 399 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHK 399 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcc
Confidence 345555555555567777777777766643 33321 1121111121 345677777777777776 23444
Q ss_pred HhHHHHHHHH----HHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHH
Q 004856 470 SSVNTAIFIS----YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGL 544 (727)
Q Consensus 470 ~~~~~~li~~----~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l 544 (727)
..++.-+=-+ -.++.++..|.+++....+..|...+|...|..-.+.++++.+..+|++.++- .| |..+|...
T Consensus 400 kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~--~Pe~c~~W~ky 477 (677)
T KOG1915|consen 400 KFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF--SPENCYAWSKY 477 (677)
T ss_pred cchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--ChHhhHHHHHH
Confidence 4444433333 34678899999999887766888889988898888999999999999999985 45 77888888
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhhHHHHHHHHH-----H
Q 004856 545 LTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPDARVWGPLLSACK-----M 618 (727)
Q Consensus 545 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~-----~ 618 (727)
...-...|+.+.|..+|+.+.+...++.....|.+.|+.=...|.++.|..++++. ...+...+|-++..--. +
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~ 557 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQ 557 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccc
Confidence 88888899999999999998876344444567888888888999999999999888 44555567777765422 3
Q ss_pred cC-----------CHHHHHHHHHHHHccC--CCCcchHH----HHHHHHHhcCChhHHHHHHHHHHh
Q 004856 619 HS-----------ETELAELTAEKLISME--PENAGNYV----LLSNIYAAAGKWNGVAKMRTFLRD 668 (727)
Q Consensus 619 ~g-----------~~~~A~~~~~~~~~~~--p~~~~~~~----~l~~~~~~~g~~~~a~~~~~~m~~ 668 (727)
.+ +...|..+|+++...- ..+..--. ...+.-...|.-.+...+-..|.+
T Consensus 558 ~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 558 EDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred cccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence 34 5678888888887621 11122222 333444555776666666666644
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-10 Score=120.91 Aligned_cols=277 Identities=9% Similarity=0.052 Sum_probs=188.8
Q ss_pred cCCHHHHHHHHhcCCCC--Chh-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHhcCCChHHHHH
Q 004856 382 CEDLNCARKIFDSVKTK--TVV-SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTII--NILPACVNIGALEHVKY 456 (727)
Q Consensus 382 ~g~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~ 456 (727)
.|+++.|++.+....+. ++. .|-.......+.|++++|.+.|.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57777777777665443 122 2222233446778888888888887764 45543332 23456677788888888
Q ss_pred HHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CH--------HHHHHHHHHHHHcCChHHHHHHHH
Q 004856 457 LHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DI--------ITWNSMISAYAKHGDWSQCFKLYT 527 (727)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~--------~~~~~li~~~~~~g~~~~A~~~~~ 527 (727)
.++...+.. +.+..+...+...|.+.|++++|.+++..+.+..+ +. ..|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 887777765 55667777788888888888888888887654322 11 133334444444555666666777
Q ss_pred HHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH
Q 004856 528 QMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPDA 606 (727)
Q Consensus 528 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~ 606 (727)
.+-+. .+.+......+..++...|+.++|..++++..+. .|+.... ++.+....++.+++.+.+++. ...|+.
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 66443 3446777888888889999999999998888753 4444322 233334558888888888877 445644
Q ss_pred h-hHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004856 607 R-VWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRD 668 (727)
Q Consensus 607 ~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 668 (727)
. ...++...|...+++++|...++++++..| +...+..++.++.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P-~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRP-DAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4 566667778999999999999999999888 456677889999999999999888886543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-11 Score=125.84 Aligned_cols=277 Identities=13% Similarity=0.065 Sum_probs=215.1
Q ss_pred CHHHHHHHHhcCCCC--Ch-hHHHHHHHHHHhcCChHHHHHHHHHHHHCC-C-CCCHHHHHHHHHHHhcCCChHHHHHHH
Q 004856 384 DLNCARKIFDSVKTK--TV-VSWSSMIKGYVTHDQSLEALRLFSEMKLEG-V-EVDFVTIINILPACVNIGALEHVKYLH 458 (727)
Q Consensus 384 ~~~~A~~~~~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~-~p~~~t~~~ll~a~~~~~~~~~a~~~~ 458 (727)
+.++|...|..+++. |. .....+..+|...+++++|.++|+.+.+.. . .-+...|.++|.-+-+. -+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 467888888886543 33 334557788999999999999999987742 1 12455777776544221 111222
Q ss_pred -HHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 004856 459 -GYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP 536 (727)
Q Consensus 459 -~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 536 (727)
+.+++. -+..+.+|.++.+.|.-+++.+.|++.|++.....| ...+|+.+..-+.....+|.|...|+..+. +.|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 222222 255678999999999999999999999999765555 678888888888999999999999999876 556
Q ss_pred C-hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHH
Q 004856 537 D-LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPL 612 (727)
Q Consensus 537 ~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 612 (727)
. ...|..+...|.+.++++.|+-.|+++. .+.|. ......+...+.+.|+.++|+++++++ ..+| |+..--.-
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 4 5578889999999999999999999998 45665 566778888999999999999999998 4555 44444444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004856 613 LSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 613 l~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 670 (727)
...+...+++++|.+.++++.++.|++..+|..++.+|.+.|+.+.|..-|..+.+..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 5557788899999999999999999999999999999999999999999888776653
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-11 Score=125.36 Aligned_cols=247 Identities=12% Similarity=0.139 Sum_probs=195.0
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCC--CchHhHHHHHHHHHHhcCCH-HHHH
Q 004856 414 DQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL--NSLSSVNTAIFISYAKCGCI-EMAG 490 (727)
Q Consensus 414 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~-~~A~ 490 (727)
-+..+|+..|.++... +.-.......+..+|...+++++++.+|+.+.+... -.+..+|.+.+--+-+.=.+ --|.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 3568999999995443 334446667788899999999999999999988542 23566776665332221111 1122
Q ss_pred HHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC
Q 004856 491 ELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYG 569 (727)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 569 (727)
++.+.. +-...+|.++..+|.-+++.+.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+... +
T Consensus 412 ~Li~~~---~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~ 483 (638)
T KOG1126|consen 412 DLIDTD---PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---G 483 (638)
T ss_pred HHHhhC---CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh---c
Confidence 333222 34678999999999999999999999999998 678 68899999999999999999999999877 3
Q ss_pred CCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHh-hHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHH
Q 004856 570 YEPSQ-EHYASMVNLLGRAGHMDEARELVKDM-PFKPDAR-VWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLL 646 (727)
Q Consensus 570 ~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 646 (727)
+.|.- ..|-.|.-.|.|.++++.|+-.|+++ .+.|... ....+...+.+.|+.|+|++++++++-++|.|+-.-...
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 44432 24445778899999999999999998 7888554 455555559999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 004856 647 SNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 647 ~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
+.++...+++++|.+.++++++.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHh
Confidence 99999999999999999999887
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-10 Score=121.15 Aligned_cols=255 Identities=11% Similarity=0.024 Sum_probs=154.7
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCChhHH--HHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhcCChHHH
Q 004856 345 STMKNIEWGKQMHANVLRNGSDYQVSVH--NSLIDMYCECEDLNCARKIFDSVKTK---TVVSWSSMIKGYVTHDQSLEA 419 (727)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A 419 (727)
.+.|+.+.+...+..+.+. .|+.... ......+...|+++.|...++.+.+. ++.....+...|.+.|++++|
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a 206 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSL 206 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHH
Confidence 4455555555555555432 2332222 22345666777777777777766543 445666677777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 004856 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499 (727)
Q Consensus 420 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 499 (727)
.+++..+.+.+..++. ....+- ...|..++.......+.+...++++.++..
T Consensus 207 ~~~l~~l~k~~~~~~~-~~~~l~---------------------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~ 258 (398)
T PRK10747 207 LDILPSMAKAHVGDEE-HRAMLE---------------------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRK 258 (398)
T ss_pred HHHHHHHHHcCCCCHH-HHHHHH---------------------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHH
Confidence 7777777776543222 111000 001111222222233445555555555432
Q ss_pred C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHH
Q 004856 500 S-KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYA 578 (727)
Q Consensus 500 ~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 578 (727)
. .+......+...+...|+.++|.+++++..+. .|+... .++.+....++.+++.+..+...++ .+-|...+.
T Consensus 259 ~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l 332 (398)
T PRK10747 259 TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWS 332 (398)
T ss_pred HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHH
Confidence 2 35666777777788888888888888777763 444422 1233334557778888888777754 233455677
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004856 579 SMVNLLGRAGHMDEARELVKDM-PFKPDARVWGPLLSACKMHSETELAELTAEKLISM 635 (727)
Q Consensus 579 ~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 635 (727)
++...+.+.|++++|.+.|+++ ...|+...+..+...+.+.|+.++|.+++++.+.+
T Consensus 333 ~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 333 TLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7778888888888888888877 56778777777777788888888888888887664
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-09 Score=105.66 Aligned_cols=415 Identities=13% Similarity=0.123 Sum_probs=204.2
Q ss_pred CChHHHHHHHhcCCC---CCeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChh-hHHHHHHHhhcCCChHHHHHHH
Q 004856 282 ASLEDAKMLFDKMSD---KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLF-TAIAAVSSISTMKNIEWGKQMH 357 (727)
Q Consensus 282 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~ 357 (727)
+++..|..+|++... ++...|-.-+..=.++.....|..++++.... -|... .|-.-+..--..|++..|.++|
T Consensus 87 ~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 334444444444332 23344444444444444444555554444432 22111 1112222223345555555555
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 004856 358 ANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK--TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF 435 (727)
Q Consensus 358 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 435 (727)
..-.+. .|+...|++.|+.-.+-..++.|..+++... .|++.+|--...-=.++|....|..+|....+. -.|.
T Consensus 165 erW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d 240 (677)
T KOG1915|consen 165 ERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDD 240 (677)
T ss_pred HHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhH
Confidence 544433 4555555555555555555555555555532 455555555555555555555555555554432 1111
Q ss_pred ----HHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCc-hHhHHHHHHHHHHhcCCHHHHHHHHH--------h-ccCCCC
Q 004856 436 ----VTIINILPACVNIGALEHVKYLHGYSMKLGLNS-LSSVNTAIFISYAKCGCIEMAGELFD--------E-EKIDSK 501 (727)
Q Consensus 436 ----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~--------~-~~~~~~ 501 (727)
..|++...-=.+...++.|..+++..++.-... ....|..+...--+-|+....+...- . +..+.-
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~ 320 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence 122222222223344555555555555532111 13344444433334444333332222 1 222123
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChH-------HHHHHHHHH---HhcCCHHHHHHHHHHhHHhcCCC
Q 004856 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI-------TFLGLLTAC---VNAGLVEEGRIIFKEMKESYGYE 571 (727)
Q Consensus 502 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~~~---~~~g~~~~a~~~~~~~~~~~~~~ 571 (727)
|-.+|--.+..-...|+.+...++|++.+.. ++|-.. .|..+=.+| ....+.+.+.++++...+. ++
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l--IP 397 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL--IP 397 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--cC
Confidence 5556666666666666777777777766653 455211 122221122 2345666666666666642 22
Q ss_pred CChhHHHHHH----HHHHhcCCHHHHHHHHHhC-CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHH
Q 004856 572 PSQEHYASMV----NLLGRAGHMDEARELVKDM-PFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLL 646 (727)
Q Consensus 572 p~~~~~~~li----~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 646 (727)
-...++.-+- ....|+.++..|.+++..+ |.-|...++...|..-.+.++++....+|++.++-.|.+..++...
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~ky 477 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKY 477 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHH
Confidence 2233333322 2233566666677666655 5566666666666666666667777777777777777666666666
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCcChHHHHHHHHHH
Q 004856 647 SNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL 709 (727)
Q Consensus 647 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~f~~~d~~hp~~~~i~~~l~~l 709 (727)
+..-...|+++.|+.+|....+....-.|..-|. .-+.|-.....+.-+..+|..|-+.
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ldmpellwk----aYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPALDMPELLWK----AYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHH----HhhhhhhhcchHHHHHHHHHHHHHh
Confidence 6666666777777777666655544333433331 1233444445555556666544443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.9e-09 Score=102.80 Aligned_cols=286 Identities=10% Similarity=0.098 Sum_probs=170.4
Q ss_pred HHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCC--CCChhHHHHHHHHHHhcCC
Q 004856 307 SAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS--DYQVSVHNSLIDMYCECED 384 (727)
Q Consensus 307 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~ 384 (727)
.++-...+.++++.-.......|+.-+...-+....+.-...++++|+.+|+++.+... --|..+|+.++ |.+..+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhh
Confidence 34444556667777777666666544443333333444456677777777777777631 11445555544 333322
Q ss_pred --HH-HHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcCCChHHHHHHHHH
Q 004856 385 --LN-CARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF-VTIINILPACVNIGALEHVKYLHGY 460 (727)
Q Consensus 385 --~~-~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~ 460 (727)
+. .|..+++ +.+--+.|...+.+-|.-.++.++|...|++..+. .|.. ..++.+..-|....+...|.+-++.
T Consensus 313 skLs~LA~~v~~-idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 313 SKLSYLAQNVSN-IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HHHHHHHHHHHH-hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 11 1222222 22223445555666677777777788777777764 3433 3445555567777777777777777
Q ss_pred HHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChH
Q 004856 461 SMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI 539 (727)
Q Consensus 461 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 539 (727)
+++.. +.|-..|-.|.++|.-.+...-|+-.|++....+| |...|.+|..+|.+.++.++|++.|++....| ..+..
T Consensus 390 Avdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~ 467 (559)
T KOG1155|consen 390 AVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGS 467 (559)
T ss_pred HHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchH
Confidence 76655 55666667777777777777777777776554444 66777777777777777777777777777655 33556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhc---C-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 004856 540 TFLGLLTACVNAGLVEEGRIIFKEMKESY---G-YEPS-QEHYASMVNLLGRAGHMDEARELVKD 599 (727)
Q Consensus 540 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 599 (727)
.+..|...+-+.++.++|.+.|+...+.. | +.|. .....-|..-+.+.+++++|..+...
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 67777777777777777777776655431 1 2221 22222345555666666666654443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.1e-10 Score=118.65 Aligned_cols=292 Identities=11% Similarity=0.040 Sum_probs=135.2
Q ss_pred hcCCchHHHHHHHHHHHcCCCCChh-hHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHH
Q 004856 311 QSGFPKESLELLMCMVRSGFRADLF-TAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCAR 389 (727)
Q Consensus 311 ~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 389 (727)
..|+++.|.+.+.+..+. .|+.. .+.....+....|+.+.+.+.+..+.+....+...+.......+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 456777777777665543 23322 223333444455666666666655544321111122233344445555555555
Q ss_pred HHHhcCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCC
Q 004856 390 KIFDSVKTK---TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL 466 (727)
Q Consensus 390 ~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~ 466 (727)
..++.+.+. +...+..+...|.+.|++++|.+++.++.+.++.+. ..+..+-.
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~-~~~~~l~~----------------------- 229 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD-EEFADLEQ----------------------- 229 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH-HHHHHHHH-----------------------
Confidence 555544422 333444444555555555555555555554432211 11100000
Q ss_pred CchHhHHHHHHHHHHhcCCHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHH---H
Q 004856 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKID-SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITF---L 542 (727)
Q Consensus 467 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~ 542 (727)
..+..++..-......+.....++..+.. +.+...+..+...+...|+.++|.+++++..+. .||.... .
T Consensus 230 ----~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~ 303 (409)
T TIGR00540 230 ----KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPL 303 (409)
T ss_pred ----HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHH
Confidence 00000010001111222333333333211 125666667777777777777777777777764 3443311 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh--C-CCCCCHhhHHHHHHHHHHc
Q 004856 543 GLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKD--M-PFKPDARVWGPLLSACKMH 619 (727)
Q Consensus 543 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~ll~~~~~~ 619 (727)
.........++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|++ . ...|+...+..+...+.+.
T Consensus 304 l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~ 383 (409)
T TIGR00540 304 CLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQA 383 (409)
T ss_pred HHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHc
Confidence 111112223555566666655554311111113444556666666666666666662 2 3455555555555556666
Q ss_pred CCHHHHHHHHHHHHc
Q 004856 620 SETELAELTAEKLIS 634 (727)
Q Consensus 620 g~~~~A~~~~~~~~~ 634 (727)
|+.++|.+++++.+.
T Consensus 384 g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 384 GDKAEAAAMRQDSLG 398 (409)
T ss_pred CCHHHHHHHHHHHHH
Confidence 666666666665543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.3e-10 Score=119.57 Aligned_cols=284 Identities=13% Similarity=0.047 Sum_probs=191.5
Q ss_pred hcCCChHHHHHHHhcCCCC--Ce-ehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChh--hHHHHHHHhhcCCChHHH
Q 004856 279 SKLASLEDAKMLFDKMSDK--DR-VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLF--TAIAAVSSISTMKNIEWG 353 (727)
Q Consensus 279 ~~~g~~~~A~~~~~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a 353 (727)
...|+++.|++.+.+..+. +. ..+-.....+.+.|+++.|.+.|.+..+.. |+.. ............|+.+.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 3579999999999887653 22 223344566778899999999999987653 5543 333346777889999999
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC---hhHHHHH-H---HHHHhcCChHHHHHHHHHH
Q 004856 354 KQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKT---VVSWSSM-I---KGYVTHDQSLEALRLFSEM 426 (727)
Q Consensus 354 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l-i---~~~~~~g~~~~A~~~~~~m 426 (727)
...++.+.+.. +-+..+...+...|...|++++|.+.+..+.+.. ...+..+ . .++...+..++..+.+..+
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999886 5566788999999999999999999999887542 2222111 1 1112222222222233332
Q ss_pred HHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHH-
Q 004856 427 KLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIIT- 505 (727)
Q Consensus 427 ~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~- 505 (727)
.... |+ ..+.+...+..+...+...|+.++|.+++++..+..||...
T Consensus 252 ~~~~--p~------------------------------~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~ 299 (409)
T TIGR00540 252 WKNQ--PR------------------------------HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAI 299 (409)
T ss_pred HHHC--CH------------------------------HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccc
Confidence 2211 10 01135556666677777778888888777775544454432
Q ss_pred --HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-h--HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 004856 506 --WNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD-L--ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASM 580 (727)
Q Consensus 506 --~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 580 (727)
+..........++.+.+++.+++..+. .|+ . ....++...|.+.|++++|.+.|+..... ...|+...+..+
T Consensus 300 ~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~-~~~p~~~~~~~L 376 (409)
T TIGR00540 300 SLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAAC-KEQLDANDLAMA 376 (409)
T ss_pred hhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh-hcCCCHHHHHHH
Confidence 111222223356778888888887764 464 4 45668888899999999999999853332 457888888899
Q ss_pred HHHHHhcCCHHHHHHHHHhC
Q 004856 581 VNLLGRAGHMDEARELVKDM 600 (727)
Q Consensus 581 i~~~~~~g~~~~A~~~~~~~ 600 (727)
...+.+.|+.++|.+++++.
T Consensus 377 a~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999988874
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.6e-08 Score=97.68 Aligned_cols=446 Identities=13% Similarity=0.150 Sum_probs=231.4
Q ss_pred hhHHHHHHHHHccCChhHHHHHHhcCCC-----CCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 004856 66 ILSSNLIDSYANLGLLSLSQQVFNSITS-----PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRS 140 (727)
Q Consensus 66 ~~~~~li~~~~~~g~~~~A~~~f~~~~~-----~~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 140 (727)
.+|-.-+....++|++..-+..|+.... .....|...|.-..+.|-++-++.+|++..+ +.|. .-.--|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk--~~P~--~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK--VAPE--AREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh--cCHH--HHHHHHHH
Confidence 4455555666678888888888875431 2344688888888888888889999988876 2333 35666777
Q ss_pred hhccCChhHHHHHHHHHHHHc------CCCchhHHHHHHHhhhccCCCChhhhhhhcc--------CCCCCcccHHHHHH
Q 004856 141 CSCLLDFISGEKIHAQVVKLG------FDSFDDVGDALVEFYIKCDGGFENEKGMIQR--------KFKDLKSRWNSLIS 206 (727)
Q Consensus 141 ~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~y~~~~~g~~~~a~~~~~--------~~~~~~~~~~~li~ 206 (727)
++..+++++|.+.+..++... ...+-..|.-+-+..++. .+.-.-..++. .+..-..-|++|..
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~--p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQN--PDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhC--cchhcccCHHHHHHhhcccCcHHHHHHHHHHHH
Confidence 778888888888887775321 234445666666655554 22222211111 11222334788888
Q ss_pred HHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHH
Q 004856 207 LAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLED 286 (727)
Q Consensus 207 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 286 (727)
-|.+.|.+++|.++|++-.+. ..+...|+.+.++|+.-..-..+..+= .....+..+. ..-+++-
T Consensus 257 YYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~e------------d~~dl~~ 321 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEE------------DDVDLEL 321 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChh------------hhhhHHH
Confidence 888888888888888776653 234445555666555432111111100 0000000000 0012233
Q ss_pred HHHHHhcCCCC---------------CeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChH
Q 004856 287 AKMLFDKMSDK---------------DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIE 351 (727)
Q Consensus 287 A~~~~~~~~~~---------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 351 (727)
...-|+.+..+ ++..|..-.. +..|++.+-...|.+..+. +.|-...
T Consensus 322 ~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~--------------- 383 (835)
T KOG2047|consen 322 HMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAV--------------- 383 (835)
T ss_pred HHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCC---------------
Confidence 33334433322 2222222111 2234444444444444432 2221110
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh-------hHHHHHHHHHHhcCChHHHHHHHH
Q 004856 352 WGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV-------VSWSSMIKGYVTHDQSLEALRLFS 424 (727)
Q Consensus 352 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~ 424 (727)
..-...|..+...|-..|+++.|+.+|++..+-+- ..|......=.++.+++.|+++.+
T Consensus 384 --------------Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~ 449 (835)
T KOG2047|consen 384 --------------GSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMR 449 (835)
T ss_pred --------------CChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 01122355566666666666666666666544311 234444444455566666666655
Q ss_pred HHHHCCCC----------C-------CHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHH
Q 004856 425 EMKLEGVE----------V-------DFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIE 487 (727)
Q Consensus 425 ~m~~~g~~----------p-------~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 487 (727)
+.....-. | +...+...+..--..|-++..+.+++.+++..+..-..+-| ....+-...-++
T Consensus 450 ~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfe 528 (835)
T KOG2047|consen 450 RATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFE 528 (835)
T ss_pred hhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHH
Confidence 54321111 1 11223333444445567777777777777766532222222 122244556677
Q ss_pred HHHHHHHhccCC--CCCH-HHHHHHHHHHHHc---CChHHHHHHHHHHHHCCCCCChHHHHHHHHH--HHhcCCHHHHHH
Q 004856 488 MAGELFDEEKID--SKDI-ITWNSMISAYAKH---GDWSQCFKLYTQMKQSDVRPDLITFLGLLTA--CVNAGLVEEGRI 559 (727)
Q Consensus 488 ~A~~~~~~~~~~--~~~~-~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~g~~~~a~~ 559 (727)
++.+++++-... .|++ ..|+..+.-+.+. ...+.|..+|++.++ |++|...-+.-|+.+ -..-|....|..
T Consensus 529 esFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~ams 607 (835)
T KOG2047|consen 529 ESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMS 607 (835)
T ss_pred HHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 788887762211 4554 4677766555432 257788888888887 566643322222222 223466666667
Q ss_pred HHHHhHH
Q 004856 560 IFKEMKE 566 (727)
Q Consensus 560 ~~~~~~~ 566 (727)
+++++..
T Consensus 608 iyerat~ 614 (835)
T KOG2047|consen 608 IYERATS 614 (835)
T ss_pred HHHHHHh
Confidence 7666543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.5e-12 Score=127.51 Aligned_cols=128 Identities=16% Similarity=0.112 Sum_probs=58.3
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 004856 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA 547 (727)
Q Consensus 469 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 547 (727)
+...+..+...+.+.|+.++|.+.+++.....| |....+.++..+...|+.+++.++++...+.. +.|+..+..+..+
T Consensus 145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~ 223 (280)
T PF13429_consen 145 SARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAA 223 (280)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHH
Confidence 333444444444555555555555554332234 34555556666666666666666655555432 3344455556666
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 004856 548 CVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKD 599 (727)
Q Consensus 548 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 599 (727)
+...|+.++|..++++..+. .+.|+.....+.+++...|+.++|.++..+
T Consensus 224 ~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 224 YLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT--------------
T ss_pred hccccccccccccccccccc--cccccccccccccccccccccccccccccc
Confidence 66666666666666665543 223455555666666666666666665544
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.1e-09 Score=106.25 Aligned_cols=257 Identities=14% Similarity=0.066 Sum_probs=177.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCH
Q 004856 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCI 486 (727)
Q Consensus 407 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 486 (727)
..-+...+++.+..++++...+.. ++....+..-|.++...|+..+-..+-..+.+. .|..+.+|-++.-.|.-.|+.
T Consensus 251 ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~ 328 (611)
T KOG1173|consen 251 ADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKY 328 (611)
T ss_pred HHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCc
Confidence 333444555555555555554431 222233333333444444444433332233322 244556666666667777888
Q ss_pred HHHHHHHHhccCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 004856 487 EMAGELFDEEKIDSKD-IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMK 565 (727)
Q Consensus 487 ~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 565 (727)
.+|++.|.+.....|. ...|-.....|+-.|.-++|+..+...-+. ++-....+.-+.--|.+.+..+.|.++|....
T Consensus 329 seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ 407 (611)
T KOG1173|consen 329 SEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL 407 (611)
T ss_pred HHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 8888888875533443 468999999999999999999998887663 22234445556666888899999999998887
Q ss_pred HhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004856 566 ESYGYEPS-QEHYASMVNLLGRAGHMDEARELVKDMP-----FKPD----ARVWGPLLSACKMHSETELAELTAEKLISM 635 (727)
Q Consensus 566 ~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 635 (727)
++.|+ +.+.+-+.-+....+.+.+|..+|+..- ..+. ..+++.|..+|++.+.+++|+..+++++.+
T Consensus 408 ---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l 484 (611)
T KOG1173|consen 408 ---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL 484 (611)
T ss_pred ---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 55565 5577777777778889999999988761 1122 235677777899999999999999999999
Q ss_pred CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 636 EPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 636 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
.|.+..+|..++.+|...|+++.|++.|.+..-.
T Consensus 485 ~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 485 SPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 9999999999999999999999999999875443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.9e-08 Score=101.23 Aligned_cols=436 Identities=13% Similarity=0.084 Sum_probs=267.2
Q ss_pred HHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhH--HHHHhh--c
Q 004856 205 ISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTA--LLSMYS--K 280 (727)
Q Consensus 205 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~~~--~ 280 (727)
++-+..+|++++|++...++...+ +-|...+..-+-+..+.+.+++|..+.+. .+ -..+++. +=.+|| +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~---~~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NG---ALLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cc---hhhhcchhhHHHHHHHHH
Confidence 455677888999999999988765 44555777777788888888888744332 22 1112222 355665 7
Q ss_pred CCChHHHHHHHhcCCCCCeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCh-hhHHHHHHHhhcCCChHHHHHHHHH
Q 004856 281 LASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADL-FTAIAAVSSISTMKNIEWGKQMHAN 359 (727)
Q Consensus 281 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~ 359 (727)
.+..++|...++.....|..+...-...+.+.|++++|+++|+.+.+++..--. ..-..++.+-... . -..
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l-------~-~~~ 163 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL-------Q-VQL 163 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh-------h-HHH
Confidence 899999999999666656556666677888999999999999999877643222 2222222221111 0 011
Q ss_pred HHHhCCCCChhHHHHH---HHHHHhcCCHHHHHHHHhcC--------CCCCh-----h-----HHHHHHHHHHhcCChHH
Q 004856 360 VLRNGSDYQVSVHNSL---IDMYCECEDLNCARKIFDSV--------KTKTV-----V-----SWSSMIKGYVTHDQSLE 418 (727)
Q Consensus 360 ~~~~g~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~~--------~~~~~-----~-----~~~~li~~~~~~g~~~~ 418 (727)
+......| ..+|..+ ...+...|++.+|+++++.. .+.|. . .---|.-.+...|+.++
T Consensus 164 ~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 164 LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 22222223 2233333 34567789999999999876 22111 1 12234456678899999
Q ss_pred HHHHHHHHHHCCCCCCHHHH----HHHHHHHhcCCChH-HHHHHHHH-----------HHHhCCCchHhHHHHHHHHHHh
Q 004856 419 ALRLFSEMKLEGVEVDFVTI----INILPACVNIGALE-HVKYLHGY-----------SMKLGLNSLSSVNTAIFISYAK 482 (727)
Q Consensus 419 A~~~~~~m~~~g~~p~~~t~----~~ll~a~~~~~~~~-~a~~~~~~-----------~~~~~~~~~~~~~~~li~~~~~ 482 (727)
|..++...+... .+|.... +.++..-....-++ .....++. .....-......-++++.+|.
T Consensus 243 a~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t- 320 (652)
T KOG2376|consen 243 ASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT- 320 (652)
T ss_pred HHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 999999998875 3444222 23332222221111 11111111 111111112223344555544
Q ss_pred cCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHHhcCCHHHHHH
Q 004856 483 CGCIEMAGELFDEEKIDSKDIITWNSMISAYAK-HGDWSQCFKLYTQMKQSDVRPD--LITFLGLLTACVNAGLVEEGRI 559 (727)
Q Consensus 483 ~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~ 559 (727)
+..+.+.++-...+...|....=+.+..++.. ......+.+++...-+. .|. .......+......|+++.|.+
T Consensus 321 -nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 321 -NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred -hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 55667777777777655655444444444332 23477888888877664 354 3445556677788999999999
Q ss_pred HHH--------HhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCC-HhhHHHHHHHHHHcCCH
Q 004856 560 IFK--------EMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM--------PFKPD-ARVWGPLLSACKMHSET 622 (727)
Q Consensus 560 ~~~--------~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~ll~~~~~~g~~ 622 (727)
++. .+.+. +..| .+...++..+.+.++-+-|..++.+. ..++. ...|.-+...-.++|+.
T Consensus 398 il~~~~~~~~ss~~~~-~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~ 474 (652)
T KOG2376|consen 398 ILSLFLESWKSSILEA-KHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNE 474 (652)
T ss_pred HHHHHhhhhhhhhhhh-ccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCch
Confidence 998 44433 3444 45667788888888766555555544 22222 22344444445677999
Q ss_pred HHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 004856 623 ELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTF 665 (727)
Q Consensus 623 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 665 (727)
++|..+++++.+.+|+|..+...++-+|++.. .+.|..+-+.
T Consensus 475 ~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l~k~ 516 (652)
T KOG2376|consen 475 EEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESLSKK 516 (652)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHHhhc
Confidence 99999999999999999999999999998874 5566666443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.5e-10 Score=110.39 Aligned_cols=201 Identities=14% Similarity=0.130 Sum_probs=166.4
Q ss_pred chHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 004856 468 SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLT 546 (727)
Q Consensus 468 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 546 (727)
.....+..+...|...|++++|...+++.....| +...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3456677788889999999999999998554344 56788888999999999999999999998853 335677888889
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHH
Q 004856 547 ACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETEL 624 (727)
Q Consensus 547 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 624 (727)
.+...|++++|...++..............+..+...+.+.|++++|.+.+++. ...| +...+..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999864222233557778889999999999999999987 4444 35577777788999999999
Q ss_pred HHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 625 AELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 625 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
|...++++.+..|.++..+..++.++...|+.++|..+.+.+...
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999988888888889999999999999999998877543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.7e-09 Score=100.43 Aligned_cols=311 Identities=12% Similarity=0.157 Sum_probs=159.3
Q ss_pred hcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhC-CCCC--hhHHHHHHHHHHhcCCHHH
Q 004856 311 QSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG-SDYQ--VSVHNSLIDMYCECEDLNC 387 (727)
Q Consensus 311 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~--~~~~~~li~~~~~~g~~~~ 387 (727)
-+.++++|.++|-+|.+.. +-+..+-.++-+-+-+.|.++.|.++|+.+.++- ++-+ ..+...|..-|...|-++.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3568889999999998742 1223334456666777888888888888777652 1111 2233455666777777777
Q ss_pred HHHHHhcCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 004856 388 ARKIFDSVKTKTV---VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL 464 (727)
Q Consensus 388 A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 464 (727)
|+.+|..+.+.+. .....|+..|-+..++++|++.-+++...+-++..+-.
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI-------------------------- 179 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI-------------------------- 179 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH--------------------------
Confidence 7777777766433 34455667777777777777777666655433322111
Q ss_pred CCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHH
Q 004856 465 GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD-IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLG 543 (727)
Q Consensus 465 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 543 (727)
...|.-|...+.-..+++.|...+.+.....|+ +..--.+...+...|+++.|++.++...+.+..--..+...
T Consensus 180 -----AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~ 254 (389)
T COG2956 180 -----AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM 254 (389)
T ss_pred -----HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 111222222333334444444444443222222 22222233445555666666666655555321111334555
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHH
Q 004856 544 LLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETE 623 (727)
Q Consensus 544 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 623 (727)
|..+|.+.|+.+++...+..+.+. .++...-..+.+... ...-.+
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie--------------------------------~~~G~~ 299 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIE--------------------------------LQEGID 299 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHH--------------------------------HhhChH
Confidence 555555566665555555555533 222222222222222 222233
Q ss_pred HHHHHHHHHHccCCCCcchHHHHHHHH---HhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEE
Q 004856 624 LAELTAEKLISMEPENAGNYVLLSNIY---AAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEF 689 (727)
Q Consensus 624 ~A~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~f 689 (727)
.|.....+-+...| +...+..|+... ..-|++.+-...++.|....++..|.+.....+-..|.|
T Consensus 300 ~Aq~~l~~Ql~r~P-t~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l 367 (389)
T COG2956 300 AAQAYLTRQLRRKP-TMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTL 367 (389)
T ss_pred HHHHHHHHHHhhCC-cHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceee
Confidence 34444444444444 222333333221 122556777777777777767666665554444444444
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.6e-12 Score=89.77 Aligned_cols=50 Identities=26% Similarity=0.538 Sum_probs=48.5
Q ss_pred CCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhc
Q 004856 94 PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSC 143 (727)
Q Consensus 94 ~~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 143 (727)
||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999875
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.4e-09 Score=99.50 Aligned_cols=281 Identities=14% Similarity=0.113 Sum_probs=163.3
Q ss_pred cCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 004856 312 SGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391 (727)
Q Consensus 312 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 391 (727)
.|++.+|.++..+-.+.+-.| ...|..-..+.-+.|+.+.+.+.+..+.+.--.++..+.-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 466777777776655554332 3345555566667777777777777776664455666666677777777887777766
Q ss_pred HhcCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHhcCCChHHHHHHHHHH
Q 004856 392 FDSVK---TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFV-------TIINILPACVNIGALEHVKYLHGYS 461 (727)
Q Consensus 392 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~a~~~~~~~~~a~~~~~~~ 461 (727)
.+++. .+++........+|.+.|++.+...++.+|.+.|+--|+. ++..++.-+...+..+
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~--------- 246 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSE--------- 246 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccch---------
Confidence 55443 4466777778888888888888888888888877544432 2333333322222222
Q ss_pred HHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHH
Q 004856 462 MKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID-SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLIT 540 (727)
Q Consensus 462 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 540 (727)
.-...++..+.. +.++..-.+++.-+.+.|+.++|.++.++..+++..|+.
T Consensus 247 --------------------------gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L-- 298 (400)
T COG3071 247 --------------------------GLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL-- 298 (400)
T ss_pred --------------------------HHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH--
Confidence 222233332211 223334445555566666666666666666665555551
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhhHHHHHHHHHHc
Q 004856 541 FLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPDARVWGPLLSACKMH 619 (727)
Q Consensus 541 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~ 619 (727)
...-.+.+.++.+.-++..+...+..+..| ..+.+|...|.+.+.+.+|.+.|+.. ...|+...|+-+..++.+.
T Consensus 299 --~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~ 374 (400)
T COG3071 299 --CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQL 374 (400)
T ss_pred --HHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHc
Confidence 122234455555555555555554323333 45556666666666666666666654 4556666666666666666
Q ss_pred CCHHHHHHHHHHHHc
Q 004856 620 SETELAELTAEKLIS 634 (727)
Q Consensus 620 g~~~~A~~~~~~~~~ 634 (727)
|+.++|.++.++.+.
T Consensus 375 g~~~~A~~~r~e~L~ 389 (400)
T COG3071 375 GEPEEAEQVRREALL 389 (400)
T ss_pred CChHHHHHHHHHHHH
Confidence 666666666665553
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=7e-09 Score=97.40 Aligned_cols=316 Identities=15% Similarity=0.150 Sum_probs=157.4
Q ss_pred CChHHHHHHHhcCCCC--CeehHHH-HHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhh--cCCChHHHHHH
Q 004856 282 ASLEDAKMLFDKMSDK--DRVVWNI-MISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIS--TMKNIEWGKQM 356 (727)
Q Consensus 282 g~~~~A~~~~~~~~~~--~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~~~ 356 (727)
-.+++|+.++.++... +-...|. +.-+|.+..-++-+.+++.-..+. -||. |+..=+.+|. +.=+-..+++-
T Consensus 165 ~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E 241 (557)
T KOG3785|consen 165 MHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDE 241 (557)
T ss_pred HHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHH
Confidence 3456666666665543 2233333 334566777777777777666543 2332 2223333332 22111222222
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhc-----CCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 004856 357 HANVLRNGSDYQVSVHNSLIDMYCEC-----EDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV 431 (727)
Q Consensus 357 ~~~~~~~g~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 431 (727)
...+.+.+-.. --.+.-.++. ..-+.|.+++-.+.+.=+..--.|+--|.+.++..+|..+.+++.. .
T Consensus 242 ~k~ladN~~~~-----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--t 314 (557)
T KOG3785|consen 242 KKELADNIDQE-----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--T 314 (557)
T ss_pred HHHHHhccccc-----chhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--C
Confidence 22222221110 0011111221 2234455555444333333344456667888888888888777642 2
Q ss_pred CCCHHHHHHHHHHH-h----cCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHH
Q 004856 432 EVDFVTIINILPAC-V----NIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITW 506 (727)
Q Consensus 432 ~p~~~t~~~ll~a~-~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 506 (727)
.|-....-.+..+- . ....+..|.+.|+..-..+...|+ +.--
T Consensus 315 tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDT--------------------------------IpGR 362 (557)
T KOG3785|consen 315 TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDT--------------------------------IPGR 362 (557)
T ss_pred ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccccccc--------------------------------ccch
Confidence 33333332222221 1 111223334444433333322221 1223
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHH-HHHHHHH
Q 004856 507 NSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYA-SMVNLLG 585 (727)
Q Consensus 507 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-~li~~~~ 585 (727)
.++.+.+.-..++++.+..++.....- .-|..--..+.++.+..|.+.+|+++|-.+... .+ .|..+|. .|.++|.
T Consensus 363 QsmAs~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~-~i-kn~~~Y~s~LArCyi 439 (557)
T KOG3785|consen 363 QSMASYFFLSFQFDDVLTYLNSIESYF-TNDDDFNLNLAQAKLATGNYVEAEELFIRISGP-EI-KNKILYKSMLARCYI 439 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh-hh-hhhHHHHHHHHHHHH
Confidence 344555555556677766666666542 223332334567777777777777777665522 12 3344444 3556777
Q ss_pred hcCCHHHHHHHHHhCCCCCCHhhHHHHHHH-HHHcCCHHHHHHHHHHHHccCCCCcchH
Q 004856 586 RAGHMDEARELVKDMPFKPDARVWGPLLSA-CKMHSETELAELTAEKLISMEPENAGNY 643 (727)
Q Consensus 586 ~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 643 (727)
+++.++-|.+++-++.-..+..+...+|.- |.+.+.+=-|-..|+.+..++| ++..|
T Consensus 440 ~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP-~pEnW 497 (557)
T KOG3785|consen 440 RNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP-TPENW 497 (557)
T ss_pred hcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC-Ccccc
Confidence 777887787777777544455555555554 7777777777777777777777 34433
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.7e-12 Score=87.06 Aligned_cols=50 Identities=32% Similarity=0.338 Sum_probs=47.8
Q ss_pred CCcccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcc
Q 004856 196 DLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVE 245 (727)
Q Consensus 196 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 245 (727)
||+++||++|++|++.|++++|+++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.8e-08 Score=94.53 Aligned_cols=308 Identities=8% Similarity=-0.037 Sum_probs=212.8
Q ss_pred CCChhhHHHHHHHhhc--CCChHHHHHHHHHHHH-hCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHH-
Q 004856 331 RADLFTAIAAVSSIST--MKNIEWGKQMHANVLR-NGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSM- 406 (727)
Q Consensus 331 ~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l- 406 (727)
.|...+....+.+++. .++-..+.+.+-.+.. .-++.|+.....+...|...|+..+|+..|++...-|+.+...|
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD 270 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMD 270 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHH
Confidence 3444444445554443 3333344444444433 34677888899999999999999999999998776555433322
Q ss_pred --HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcC
Q 004856 407 --IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCG 484 (727)
Q Consensus 407 --i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 484 (727)
.-.+.+.|+.+....+...+.... +-....|..-+...-...+++.|..+-...++.. +.+...+-.-..++...|
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~ 348 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALE 348 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhcc
Confidence 333467888888887777776532 1111222222233345567777777777766654 233344444445677889
Q ss_pred CHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHH-HHHHh-cCCHHHHHHHH
Q 004856 485 CIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLL-TACVN-AGLVEEGRIIF 561 (727)
Q Consensus 485 ~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~~-~g~~~~a~~~~ 561 (727)
+.++|.-.|+......| +..+|.-|+.+|...|++.+|..+-+..... ++.+..+...+. ..|.- ..--++|.+++
T Consensus 349 R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ 427 (564)
T KOG1174|consen 349 RHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFA 427 (564)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHH
Confidence 99999999998554454 7889999999999999999999888776653 344666666553 33332 22347788888
Q ss_pred HHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 004856 562 KEMKESYGYEPS-QEHYASMVNLLGRAGHMDEARELVKDM-PFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPEN 639 (727)
Q Consensus 562 ~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 639 (727)
++-. .+.|+ ....+.+...+.+.|..++++.++++. ...||....+.|...+...+.+++|...|..++.++|++
T Consensus 428 ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 428 EKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred Hhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 8776 45676 456777888999999999999999987 667899999999999999999999999999999999976
Q ss_pred cchHH
Q 004856 640 AGNYV 644 (727)
Q Consensus 640 ~~~~~ 644 (727)
..+..
T Consensus 505 ~~sl~ 509 (564)
T KOG1174|consen 505 KRTLR 509 (564)
T ss_pred hHHHH
Confidence 65443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.8e-09 Score=98.66 Aligned_cols=285 Identities=12% Similarity=0.076 Sum_probs=178.7
Q ss_pred CCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHH
Q 004856 211 NGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKML 290 (727)
Q Consensus 211 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 290 (727)
.|++.+|.++..+-.+.+-.| ...|..-..+.-+.|+.+.+-.++.++.+....++..++-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 578888888887766655222 2345555666677788888888888888775566777777777788888888888777
Q ss_pred HhcCC---CCCeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCC
Q 004856 291 FDKMS---DKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDY 367 (727)
Q Consensus 291 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 367 (727)
.+++. .+++........+|.+.|++.+...++..|.+.|+--|... .++
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-----------------~~l----------- 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-----------------ARL----------- 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-----------------HHH-----------
Confidence 66554 35777788888899999999999999999988876544322 111
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004856 368 QVSVHNSLIDMYCECEDLNCARKIFDSVKT---KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPA 444 (727)
Q Consensus 368 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 444 (727)
...++..+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++..+..+.+..|+..+ +-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HHh
Confidence 112345555555555555555556666653 2566666777888888999999988888888776666222 223
Q ss_pred HhcCCChHHHHHHHHHHHH-hCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHH
Q 004856 445 CVNIGALEHVKYLHGYSMK-LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCF 523 (727)
Q Consensus 445 ~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 523 (727)
+.+.++.+.-.+..+.-.+ .+. +...+.+|...|.+++.+.+|.
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~-----------------------------------~p~L~~tLG~L~~k~~~w~kA~ 348 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPE-----------------------------------DPLLLSTLGRLALKNKLWGKAS 348 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCC-----------------------------------ChhHHHHHHHHHHHhhHHHHHH
Confidence 4445554444443333222 222 2234444555555555555555
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 004856 524 KLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMK 565 (727)
Q Consensus 524 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 565 (727)
+.|+...+ ..|+..+|+.+..++.+.|+.++|.+.+++..
T Consensus 349 ~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 349 EALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 55554444 34555555555555555555555555555444
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.8e-08 Score=92.59 Aligned_cols=253 Identities=12% Similarity=0.126 Sum_probs=185.5
Q ss_pred hcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCch---HhHHHHHHHHHHhcCCHH
Q 004856 412 THDQSLEALRLFSEMKLEGVEVD-FVTIINILPACVNIGALEHVKYLHGYSMKLGLNSL---SSVNTAIFISYAKCGCIE 487 (727)
Q Consensus 412 ~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~ 487 (727)
-+.+.++|.++|-+|.+. .|. ..+-.++.+.+.+.|..+.|..+|+.+.+..--+. ....-.|..=|-+.|-+|
T Consensus 47 Ls~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hhcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 356777888888888763 222 22335566677778888888888877776432221 122334566688999999
Q ss_pred HHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHHhcCCHHHHHHHHH
Q 004856 488 MAGELFDEEKI-DSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL----ITFLGLLTACVNAGLVEEGRIIFK 562 (727)
Q Consensus 488 ~A~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~ 562 (727)
.|+.+|..+.. ..--......|+..|-...+|++|++.-+++...+-++.. .-|.-|...+....+++.|...+.
T Consensus 125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 99999998763 1223456778899999999999999999999987655542 246667777777889999999999
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH--hhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 004856 563 EMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPDA--RVWGPLLSACKMHSETELAELTAEKLISMEPEN 639 (727)
Q Consensus 563 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 639 (727)
+..+. -+..+..--.+.+.....|+++.|.+.++.. ...|+. .+...|..+|.+.|+.+++...+.++.+..+ .
T Consensus 205 kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~-g 281 (389)
T COG2956 205 KALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT-G 281 (389)
T ss_pred HHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC-C
Confidence 98864 2233445556788999999999999999988 445654 3677888889999999999999999999887 5
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 640 AGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 640 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
+..-..+...-....-.++|..++.+-..+
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r 311 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRR 311 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhh
Confidence 666667777666666677777776654444
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-08 Score=104.96 Aligned_cols=232 Identities=19% Similarity=0.235 Sum_probs=171.9
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHh-----C--CCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCC--------C
Q 004856 436 VTIINILPACVNIGALEHVKYLHGYSMKL-----G--LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID--------S 500 (727)
Q Consensus 436 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~ 500 (727)
.+...+...|...|+++.|..+++...+. | .+.-....+.+...|...+++++|..+|+++... .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45555777888888888888887777664 2 2222334455777889999999998888873211 2
Q ss_pred CC-HHHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCC-C-hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC--C
Q 004856 501 KD-IITWNSMISAYAKHGDWSQCFKLYTQMKQ-----SDVRP-D-LITFLGLLTACVNAGLVEEGRIIFKEMKESYG--Y 570 (727)
Q Consensus 501 ~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p-~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~ 570 (727)
|. ..+++.|..+|.+.|++++|...+++..+ .|..+ . ..-++.+...|...+.+++|..+++...+.+. +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 32 35788888899999999998888777653 12222 2 23467778889999999999999988766533 2
Q ss_pred CCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHcc-
Q 004856 571 EPS----QEHYASMVNLLGRAGHMDEARELVKDM---------PFKPD-ARVWGPLLSACKMHSETELAELTAEKLISM- 635 (727)
Q Consensus 571 ~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~- 635 (727)
.++ ..+++.|...|.+.|++++|+++++++ +..+. ...++.+...|.+.++.++|.++|.+...+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 357999999999999999999999887 11232 346777778899999999999999988763
Q ss_pred ---CCCC---cchHHHHHHHHHhcCChhHHHHHHHHHH
Q 004856 636 ---EPEN---AGNYVLLSNIYAAAGKWNGVAKMRTFLR 667 (727)
Q Consensus 636 ---~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 667 (727)
.|++ ..+|..|+.+|...|++++|.++.+.+.
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4444 4678899999999999999999988775
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-06 Score=93.59 Aligned_cols=464 Identities=13% Similarity=0.103 Sum_probs=262.8
Q ss_pred HHHHHHHHHccCChhHHHHHHhcCCC--CCcchHH----HHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHh
Q 004856 68 SSNLIDSYANLGLLSLSQQVFNSITS--PNSLLYG----TILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSC 141 (727)
Q Consensus 68 ~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~n----~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 141 (727)
+..+.+.|-++|-...|++.+..+.. +.++.-+ .-+.+|.-.-.++++.++++.|...++.-|..+.-.+..-|
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky 688 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKY 688 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 67888999999999999998887763 2222211 12345555567899999999999888877776655544444
Q ss_pred hccCChhHHHHHHHHHHH-----------HcCCCchhHHHHHHHhhhccCCCChhhhhhh-ccCC--CC-----------
Q 004856 142 SCLLDFISGEKIHAQVVK-----------LGFDSFDDVGDALVEFYIKCDGGFENEKGMI-QRKF--KD----------- 196 (727)
Q Consensus 142 ~~~~~~~~a~~~~~~~~~-----------~~~~~~~~~~~~li~~y~~~~~g~~~~a~~~-~~~~--~~----------- 196 (727)
...-....-.++++.... ..+..|+.+.-.-|.+.++. |.+.+.+++ .+.. .|
T Consensus 689 ~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt--~QikEvERicresn~YdpErvKNfLkeAk 766 (1666)
T KOG0985|consen 689 HEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKT--GQIKEVERICRESNCYDPERVKNFLKEAK 766 (1666)
T ss_pred HHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhh--ccHHHHHHHHhccccCCHHHHHHHHHhcc
Confidence 433233333333333321 13456777777788888999 999999888 4321 10
Q ss_pred ------------------CcccH------HHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhH-------------HHH
Q 004856 197 ------------------LKSRW------NSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTL-------------INL 239 (727)
Q Consensus 197 ------------------~~~~~------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-------------~~l 239 (727)
|.+.| -..|..|++.-++.+.-.+...+..-.. +.... .-+
T Consensus 767 L~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC--~E~~ik~Li~~v~gq~~~deL 844 (1666)
T KOG0985|consen 767 LTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDC--SEDFIKNLILSVRGQFPVDEL 844 (1666)
T ss_pred ccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCC--cHHHHHHHHHHHhccCChHHH
Confidence 11111 1235556655555544444444433211 11111 122
Q ss_pred HHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcC------------CCCCee-------
Q 004856 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKM------------SDKDRV------- 300 (727)
Q Consensus 240 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~------------~~~~~~------- 300 (727)
..-+-+.++++.-...++..+..| ..|+.++|+|...|...++-.+- ++.+- .++|+.
T Consensus 845 v~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~--fLkeN~yYDs~vVGkYCEKRDP~lA~vaYe 921 (1666)
T KOG0985|consen 845 VEEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPER--FLKENPYYDSKVVGKYCEKRDPHLACVAYE 921 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHH--hcccCCcchhhHHhhhhcccCCceEEEeec
Confidence 233444556666666777777777 45788888888888765443221 11110 111110
Q ss_pred ----------------hHHHHHHHHHhcCCch---HH--------HHHHHHHHHcCCC--CChhhHHHHHHHhhcCCChH
Q 004856 301 ----------------VWNIMISAYYQSGFPK---ES--------LELLMCMVRSGFR--ADLFTAIAAVSSISTMKNIE 351 (727)
Q Consensus 301 ----------------~~~~li~~~~~~g~~~---~A--------~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~ 351 (727)
.|-...+.+.+..+.+ +. ..+.++....+++ .|....+..+.++...+-..
T Consensus 922 rGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~ 1001 (1666)
T KOG0985|consen 922 RGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPN 1001 (1666)
T ss_pred ccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcH
Confidence 1111222222222221 11 1223333333322 23344444555555555555
Q ss_pred HHHHHHHHHHHhC--CCCChhHHHHHH---------------------------HHHHhcCCHHHHHHHHhcCCC-----
Q 004856 352 WGKQMHANVLRNG--SDYQVSVHNSLI---------------------------DMYCECEDLNCARKIFDSVKT----- 397 (727)
Q Consensus 352 ~a~~~~~~~~~~g--~~~~~~~~~~li---------------------------~~~~~~g~~~~A~~~~~~~~~----- 397 (727)
+-.++++.++-.. +.-+...-|.|+ ......+-+++|..+|+...-
T Consensus 1002 eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~ 1081 (1666)
T KOG0985|consen 1002 ELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAI 1081 (1666)
T ss_pred HHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHH
Confidence 5555555443211 111111112221 122233445666666654321
Q ss_pred --------------------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHH
Q 004856 398 --------------------KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYL 457 (727)
Q Consensus 398 --------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 457 (727)
..+..|+.+..+-.+.|...+|++-|-+. -|+..|.-++..+++.|.+++-..+
T Consensus 1082 ~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~y 1155 (1666)
T KOG0985|consen 1082 QVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKY 1155 (1666)
T ss_pred HHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHH
Confidence 13457899999999999999998887543 4667899999999999999999999
Q ss_pred HHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 004856 458 HGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD 537 (727)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 537 (727)
+.++.+..-.|. +-+.||-+|++.+++.+-++++. .||+.....+.+-|...|.++.|.-+|...
T Consensus 1156 L~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi~-----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v-------- 1220 (1666)
T KOG0985|consen 1156 LLMARKKVREPY--IDSELIFAYAKTNRLTELEEFIA-----GPNVANIQQVGDRCFEEKMYEAAKLLYSNV-------- 1220 (1666)
T ss_pred HHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHhc-----CCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------
Confidence 988888765554 44678889999999998888765 566666666666666666666665555432
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHH
Q 004856 538 LITFLGLLTACVNAGLVEEGRII 560 (727)
Q Consensus 538 ~~t~~~ll~~~~~~g~~~~a~~~ 560 (727)
..|..|...+...|.++.|...
T Consensus 1221 -SN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1221 -SNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHH
Confidence 2344455555555555554433
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.4e-07 Score=92.50 Aligned_cols=127 Identities=19% Similarity=0.161 Sum_probs=106.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-hhHHHHHHHHHH
Q 004856 541 FLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPDA-RVWGPLLSACKM 618 (727)
Q Consensus 541 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~ 618 (727)
|......+.+.+..++|...+.+.... .+.....|......+...|.+++|.+.|... .+.|+. .+..++...+.+
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 445566788888999999888887742 2334567888888899999999999999877 677865 467777778999
Q ss_pred cCCHHHHHH--HHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 619 HSETELAEL--TAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 619 ~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
.|+...|.. ++..+++++|.++.+|..++.++.+.|+.++|.+-|....+-
T Consensus 731 ~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 998888888 999999999999999999999999999999999999987654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.3e-09 Score=113.68 Aligned_cols=245 Identities=13% Similarity=0.045 Sum_probs=169.1
Q ss_pred hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHh---------cCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCC
Q 004856 416 SLEALRLFSEMKLEGVEVDFV-TIINILPACV---------NIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGC 485 (727)
Q Consensus 416 ~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 485 (727)
.++|+.+|++..+. .|+.. .+..+..++. ..+++++|...++.+.+.. +.+...+..+..++...|+
T Consensus 277 ~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 277 LQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 45677777776654 34432 3333322221 2344677888888777765 4466677777788888999
Q ss_pred HHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 004856 486 IEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL-ITFLGLLTACVNAGLVEEGRIIFKE 563 (727)
Q Consensus 486 ~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~ 563 (727)
+++|...|++.....| +...|..+...+...|++++|+..+++..+ +.|+. ..+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 9999999998655556 466788888999999999999999999998 45653 3344445556778999999999998
Q ss_pred hHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhh-HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCc
Q 004856 564 MKESYGYEPS-QEHYASMVNLLGRAGHMDEARELVKDM-PFKPDARV-WGPLLSACKMHSETELAELTAEKLISMEPENA 640 (727)
Q Consensus 564 ~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (727)
+... ..|+ ...+..+...|...|+.++|...+.+. +..|+... ++.+...+...| +.|...++++++..-..+
T Consensus 432 ~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 8754 2343 556777888999999999999999987 44555444 444444466666 478887887776332222
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004856 641 GNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 641 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 670 (727)
..+..+..+|.-.|+-+.+..+ +++.+.+
T Consensus 508 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 508 NNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 2222366677778888777666 7776653
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-06 Score=88.20 Aligned_cols=265 Identities=13% Similarity=0.096 Sum_probs=170.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-----------C
Q 004856 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVD---FVTIINILPACVNIGALEHVKYLHGYSMKLG-----------L 466 (727)
Q Consensus 401 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~-----------~ 466 (727)
..|..+...|-.+|+.+.|..+|++...-..+-- ..+|..-...=.+..+++.|..+.+.+.... .
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 4688899999999999999999999876432211 1223333333345567777877776654322 2
Q ss_pred Cch------HhHHHHHHHHHHhcCCHHHHHHHHHhccCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 004856 467 NSL------SSVNTAIFISYAKCGCIEMAGELFDEEKID---SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD 537 (727)
Q Consensus 467 ~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 537 (727)
++. ..+|...++..-..|-++....+++++... .|..+ -.....+-.+.-++++.++|++-+..--.|+
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii--~NyAmfLEeh~yfeesFk~YErgI~LFk~p~ 545 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQII--INYAMFLEEHKYFEESFKAYERGISLFKWPN 545 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHH--HHHHHHHHhhHHHHHHHHHHHcCCccCCCcc
Confidence 222 234455566667788888888888875422 33322 2222334567778999999988766533455
Q ss_pred h-HHHHHHHHHHHh---cCCHHHHHHHHHHhHHhcCCCCChh--HHHHHHHHHHhcCCHHHHHHHHHhCC--CCCC--Hh
Q 004856 538 L-ITFLGLLTACVN---AGLVEEGRIIFKEMKESYGYEPSQE--HYASMVNLLGRAGHMDEARELVKDMP--FKPD--AR 607 (727)
Q Consensus 538 ~-~t~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~--~~ 607 (727)
. ..|+..+.-+.+ .-.++.|..+|++..+ |.+|... .|-.....=.+.|....|+++++++. .++. ..
T Consensus 546 v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~ 623 (835)
T KOG2047|consen 546 VYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLD 623 (835)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHH
Confidence 3 356666655544 3478999999999996 6766533 23333333346688999999999983 3332 23
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcc--hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 608 VWGPLLSACKMHSETELAELTAEKLISMEPENAG--NYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 608 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
.||..|.--...=-+.....+|+++++.-|++.. .....+++-.+.|..+.|+.++..-.+.
T Consensus 624 myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 624 MYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred HHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 6777765433222244567789999988775432 3345667788889999999998766554
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1e-07 Score=95.58 Aligned_cols=263 Identities=10% Similarity=-0.002 Sum_probs=143.3
Q ss_pred CeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 004856 298 DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLID 377 (727)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 377 (727)
+....-.-..-+...+++.+..++++...+. .++....+..=|.++...|+..+-..+-..+++. .|....+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 3333444445566677788888888877665 2344445555555666666665555554455544 3455667888888
Q ss_pred HHHhcCCHHHHHHHHhcCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHH
Q 004856 378 MYCECEDLNCARKIFDSVKTKTV---VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHV 454 (727)
Q Consensus 378 ~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 454 (727)
-|.-.|+..+|++.|.+...-|. ..|-.....|+-.|..++|+..+...-+.- +-...-+.-+.--|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHH
Confidence 88888999999999987665443 578888899999999999988887765421 11111111222335555666666
Q ss_pred HHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccC----C---CC-CHHHHHHHHHHHHHcCChHHHHHHH
Q 004856 455 KYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI----D---SK-DIITWNSMISAYAKHGDWSQCFKLY 526 (727)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~---~~-~~~~~~~li~~~~~~g~~~~A~~~~ 526 (727)
.+++..+.... +.|+.+.+-+.-+....+.+.+|...|+.... . .+ -..+++.|..+|.+.+.+++|+..+
T Consensus 400 e~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 400 EKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 66665555433 33444444444444444555555555543210 0 00 1123344444444444444444444
Q ss_pred HHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 004856 527 TQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMK 565 (727)
Q Consensus 527 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 565 (727)
++.+... +-|..|+.++.-.|...|.++.|...|.+..
T Consensus 479 q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 479 QKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 4444321 1234444444444444444444444444443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.2e-07 Score=94.32 Aligned_cols=341 Identities=14% Similarity=0.076 Sum_probs=197.0
Q ss_pred hHHHHHhhcCCChHHHHHHHhcC--CCCCeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCC
Q 004856 272 TALLSMYSKLASLEDAKMLFDKM--SDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKN 349 (727)
Q Consensus 272 ~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 349 (727)
-+-|..|.+.|.+..|.+.-..- ...|......+..++.+..-+++|-++|+++.. +...+.++.+-..
T Consensus 619 laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgda 689 (1636)
T KOG3616|consen 619 LAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDA 689 (1636)
T ss_pred HHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccH
Confidence 34577788888777766543221 123555555566666666667777777776642 1222333333333
Q ss_pred hHHHHHHHHHHHHhCCCCChhH-HHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004856 350 IEWGKQMHANVLRNGSDYQVSV-HNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKL 428 (727)
Q Consensus 350 ~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 428 (727)
+..|.++-+.. ++..++. -..-..-+...|+++.|...|-+... .-.-|.+-.....+.+|+.+++.++.
T Consensus 690 f~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~~-----~~kaieaai~akew~kai~ildniqd 760 (1636)
T KOG3616|consen 690 FGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC-----LIKAIEAAIGAKEWKKAISILDNIQD 760 (1636)
T ss_pred HHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh-----HHHHHHHHhhhhhhhhhHhHHHHhhh
Confidence 34444433222 1111111 11222334456777777666644321 11234455667788888888888776
Q ss_pred CCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHH
Q 004856 429 EGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNS 508 (727)
Q Consensus 429 ~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 508 (727)
+.. -..-|..+...|+..|+++.|+++|-.. ..++--|++|.+.|++++|.++-.+..+.+..+..|-+
T Consensus 761 qk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yia 829 (1636)
T KOG3616|consen 761 QKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIA 829 (1636)
T ss_pred hcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHH
Confidence 532 2334566677788888888888876532 23455677888888888888887776532334556666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 004856 509 MISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG 588 (727)
Q Consensus 509 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 588 (727)
-..-+-.+|++.+|.++|-... .|+. .|..|-+.|..+..+++.++-.. ..-..+...+..-|...|
T Consensus 830 kaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~----d~l~dt~~~f~~e~e~~g 896 (1636)
T KOG3616|consen 830 KAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHG----DHLHDTHKHFAKELEAEG 896 (1636)
T ss_pred hHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhCh----hhhhHHHHHHHHHHHhcc
Confidence 6666778888888887775442 3542 35667777887777776654321 111335556677777788
Q ss_pred CHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 004856 589 HMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTF 665 (727)
Q Consensus 589 ~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 665 (727)
++.+|+.-|-+.+ -|.+-++.|...+-+++|-++.+ ...-.|..-.....++ +.=--+.|.+++++
T Consensus 897 ~lkaae~~flea~------d~kaavnmyk~s~lw~dayriak---tegg~n~~k~v~flwa--ksiggdaavkllnk 962 (1636)
T KOG3616|consen 897 DLKAAEEHFLEAG------DFKAAVNMYKASELWEDAYRIAK---TEGGANAEKHVAFLWA--KSIGGDAAVKLLNK 962 (1636)
T ss_pred ChhHHHHHHHhhh------hHHHHHHHhhhhhhHHHHHHHHh---ccccccHHHHHHHHHH--HhhCcHHHHHHHHh
Confidence 8888888777664 45666677777776666655433 2233334333333333 33333466776665
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=5e-07 Score=94.16 Aligned_cols=541 Identities=12% Similarity=0.065 Sum_probs=299.5
Q ss_pred CCchhhHHHHHH--HHHccCChhHHHHHHhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHHHhC-C-------CCCCc
Q 004856 62 HQNLILSSNLID--SYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQ-S-------MYPAE 131 (727)
Q Consensus 62 ~~~~~~~~~li~--~~~~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~-g-------~~p~~ 131 (727)
..|..+...+++ .|..-|+.+.|.+-.+.+. +-..|..|.+-|++..+.+-|.-++..|... | .+-+.
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE 800 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence 457777777765 4677899999988777665 4456999999999999999999988888542 2 12121
Q ss_pred ccHHHHHHHhhccCChhHHHHHHHHHHHHcCCCchhHHHHHHHhhhccCCCChhhhhhh-ccCCC-CCcccHHHHHHHHH
Q 004856 132 DTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI-QRKFK-DLKSRWNSLISLAV 209 (727)
Q Consensus 132 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~~~g~~~~a~~~-~~~~~-~~~~~~~~li~~~~ 209 (727)
.+=..+.-.....|.+++|+.++++-.+.. -|=..|... |.+++|.++ +.-.+ .-..||.....-+-
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~--g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Le 869 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQ--GMWSEAFEIAETKDRIHLRNTYYNYAKYLE 869 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhc--ccHHHHHHHHhhccceehhhhHHHHHHHHH
Confidence 333333333457899999999999887643 344566667 999999988 43222 12234544555555
Q ss_pred hCCCchhHHHHHHHHH----------hCC---------CCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhH
Q 004856 210 QNGKSEKSFELFKLMR----------MEG---------AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSV 270 (727)
Q Consensus 210 ~~g~~~~A~~~~~~m~----------~~g---------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 270 (727)
..++.+.|++.|++-. ... -..|...|.--..-+-..|+.+.|..+|..+..
T Consensus 870 ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------- 940 (1416)
T KOG3617|consen 870 ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------- 940 (1416)
T ss_pred hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------
Confidence 5677777777776532 110 011222222222223345667777766665543
Q ss_pred HhHHHHHhhcCCChHHHHHHHhcCCCCCeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCC--
Q 004856 271 NTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK-- 348 (727)
Q Consensus 271 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~-- 348 (727)
|-+++...|-.|+.++|-++-++- .|......+.+-|-..|++.+|..+|.+.+ +|...|+.|-..+
T Consensus 941 ~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~ 1009 (1416)
T KOG3617|consen 941 YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMK 1009 (1416)
T ss_pred hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHH
Confidence 355677777788888888877653 356677778888889999999999998764 3444444433222
Q ss_pred -------------ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC--------------CCChh
Q 004856 349 -------------NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK--------------TKTVV 401 (727)
Q Consensus 349 -------------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--------------~~~~~ 401 (727)
+.-.|-+.|++ .|.. ....+..|-+.|.+.+|.++-=+-. ..|+.
T Consensus 1010 d~L~nlal~s~~~d~v~aArYyEe---~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ 1081 (1416)
T KOG3617|consen 1010 DRLANLALMSGGSDLVSAARYYEE---LGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPK 1081 (1416)
T ss_pred HHHHHHHhhcCchhHHHHHHHHHH---cchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHH
Confidence 22222223322 1211 2233456777777777766521111 12444
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHH--hCCCc---hHhHHHHH
Q 004856 402 SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK--LGLNS---LSSVNTAI 476 (727)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~--~~~~~---~~~~~~~l 476 (727)
..+--..-+..+.++++|..++-...+ |...+..|...+- .-.+++-+.|.- .+.++ ...+...+
T Consensus 1082 ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~nv-~vtee~aE~mTp~Kd~~~~e~~R~~vLeqv 1151 (1416)
T KOG3617|consen 1082 LLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRNV-RVTEEFAELMTPTKDDMPNEQERKQVLEQV 1151 (1416)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCCC-chhHHHHHhcCcCcCCCccHHHHHHHHHHH
Confidence 455555566677777777777655443 3444555544332 112222222211 11111 12344555
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHH-------------HHHHHHCCCCCChHHHHH
Q 004856 477 FISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL-------------YTQMKQSDVRPDLITFLG 543 (727)
Q Consensus 477 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-------------~~~m~~~g~~p~~~t~~~ 543 (727)
.+.+.+.|.+..|-+-|.+... - -.-+.++.+.|+.++..-. -+-+.....+.|+.+...
T Consensus 1152 ae~c~qQG~Yh~AtKKfTQAGd----K---l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~ 1224 (1416)
T KOG3617|consen 1152 AELCLQQGAYHAATKKFTQAGD----K---LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKD 1224 (1416)
T ss_pred HHHHHhccchHHHHHHHhhhhh----H---HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhh
Confidence 6667777777777776665331 0 0123455555554432110 011122224445555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHh-hHHH----------H
Q 004856 544 LLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDAR-VWGP----------L 612 (727)
Q Consensus 544 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~-~~~~----------l 612 (727)
++.-|.+...++.--..|..... ..++.|..+-. ..|-+++|.+.+.++..+.+.. .++. .
T Consensus 1225 I~tFYTKgqafd~LanFY~~cAq-----iEiee~q~ydK---a~gAl~eA~kCl~ka~~k~~~~t~l~~Lq~~~a~vk~~ 1296 (1416)
T KOG3617|consen 1225 IETFYTKGQAFDHLANFYKSCAQ-----IEIEELQTYDK---AMGALEEAAKCLLKAEQKNMSTTGLDALQEDLAKVKVQ 1296 (1416)
T ss_pred hHhhhhcchhHHHHHHHHHHHHH-----hhHHHHhhhhH---HhHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence 55555444333333333332221 11122222111 1345667777777664332221 2222 2
Q ss_pred HHHHH-HcCCHHHHHHHHHHHHccCCCC------cchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 613 LSACK-MHSETELAELTAEKLISMEPEN------AGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 613 l~~~~-~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
+.... ...|..+.+.-++.+++ +|.. ...|..|+..|....+|.+|-+.+..|..+
T Consensus 1297 l~~~q~~~eD~~~~i~qc~~lle-ep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k 1359 (1416)
T KOG3617|consen 1297 LRKLQIMKEDAADGIRQCTTLLE-EPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKK 1359 (1416)
T ss_pred HHHHHHhhhhHHHHHHHHHHHhh-CcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhc
Confidence 22211 12245555555555554 2322 356778999999999999999999999876
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.9e-08 Score=93.86 Aligned_cols=404 Identities=10% Similarity=-0.009 Sum_probs=185.9
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHhCCCCCC-cccHHHHHHHhhccCChhHHHHHHHHHHHHcCCCc-hhHHHHHHHhh
Q 004856 99 YGTILKNLSKFGEYEKTLLVYKQMALQSMYPA-EDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF-DDVGDALVEFY 176 (727)
Q Consensus 99 ~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~y 176 (727)
+-..-+-|-++|.+++|++.|.+.+. ..|| ++-|.....+|...|+++.+.+--...++. .|+ +.++.---+++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence 33445667788999999999999887 4677 566666777778888888776655554443 233 22333333444
Q ss_pred hccCCCChhhhhhhccCCCCCcccHHHHHHHHHhCCCchhHHHHHHH---------HHhCC--CCCChhhHHHHHHHhcc
Q 004856 177 IKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKL---------MRMEG--AEFDSGTLINLLRSTVE 245 (727)
Q Consensus 177 ~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---------m~~~g--~~p~~~t~~~ll~~~~~ 245 (727)
-.. |++++|..- +|-.++..+|..+.-.--+.+++++ |.+.+ +-|+.....+....+..
T Consensus 194 E~l--g~~~eal~D--------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~ 263 (606)
T KOG0547|consen 194 EQL--GKFDEALFD--------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHA 263 (606)
T ss_pred Hhh--ccHHHHHHh--------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccc
Confidence 444 666665442 1122233333222222222233322 12122 34555444444443321
Q ss_pred cCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcC-CChHHHHHHHhcCC-------CC---Ceeh------HHHHHHH
Q 004856 246 LKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKL-ASLEDAKMLFDKMS-------DK---DRVV------WNIMISA 308 (727)
Q Consensus 246 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~-------~~---~~~~------~~~li~~ 308 (727)
.-.. .+...+...|...-..+-..+... ..+..|...+.+-. .. |... .+.-..-
T Consensus 264 ~~~~--------~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF 335 (606)
T KOG0547|consen 264 DPKP--------LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTF 335 (606)
T ss_pred cccc--------cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhh
Confidence 1000 000000000111111111111110 11222222222110 00 1111 1111111
Q ss_pred HHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHH
Q 004856 309 YYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCA 388 (727)
Q Consensus 309 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 388 (727)
+.-.|+...|...|+........++. .|..+-..+....+.++..+.|....+.. +-+..+|.--..++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 22345666666666666554322222 14444455555555555555555555443 22334444444444444555555
Q ss_pred HHHHhcCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC
Q 004856 389 RKIFDSVKTK---TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG 465 (727)
Q Consensus 389 ~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 465 (727)
..=|++...- ++..|--+-.+.-+.+++++++..|++.+..
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk------------------------------------ 457 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK------------------------------------ 457 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------------------------
Confidence 5555544432 2233333333333444555555555554443
Q ss_pred CCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCC---------HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 004856 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD---------IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP 536 (727)
Q Consensus 466 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 536 (727)
++.-+.+|+-....+...+++++|.+.|+......|+ .....+++. +.-.+++..|+.++++..+ +.|
T Consensus 458 FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e--~Dp 534 (606)
T KOG0547|consen 458 FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIE--LDP 534 (606)
T ss_pred CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHc--cCc
Confidence 2334444555555555555555555555542222222 111111111 1133677777777777776 445
Q ss_pred -ChHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 004856 537 -DLITFLGLLTACVNAGLVEEGRIIFKEMK 565 (727)
Q Consensus 537 -~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 565 (727)
....|..|...-.+.|+.++|+++|++..
T Consensus 535 kce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 535 KCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 35667777777777777777777777655
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.2e-08 Score=101.29 Aligned_cols=213 Identities=13% Similarity=0.132 Sum_probs=149.0
Q ss_pred ChHHHHHHHHHHHHh-CCCc--hHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHH
Q 004856 450 ALEHVKYLHGYSMKL-GLNS--LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKL 525 (727)
Q Consensus 450 ~~~~a~~~~~~~~~~-~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~ 525 (727)
..+.+..-+..++.. ...| ....+..+...|.+.|+.++|...|++.....| +...|+.+...+...|++++|++.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 344455555555542 2222 245567777788999999999999998655455 578899999999999999999999
Q ss_pred HHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--CC
Q 004856 526 YTQMKQSDVRPD-LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM--PF 602 (727)
Q Consensus 526 ~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~ 602 (727)
|++..+ +.|+ ..++..+..++...|++++|.+.++...+. .|+..........+...++.++|.+.+++. ..
T Consensus 121 ~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 999998 5674 677888888899999999999999998864 454332222223345678899999999765 22
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH-------ccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004856 603 KPDARVWGPLLSACKMHSETELAELTAEKLI-------SMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGL 671 (727)
Q Consensus 603 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 671 (727)
.|+. |.. .......|+...+ ..++.+. ++.|+.+.+|..++.++.+.|++++|+..+++..+...
T Consensus 196 ~~~~--~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 196 DKEQ--WGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred Cccc--cHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3332 321 1222334544333 2333333 34566678999999999999999999999998876643
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.6e-08 Score=95.18 Aligned_cols=199 Identities=12% Similarity=0.121 Sum_probs=106.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHH
Q 004856 400 VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479 (727)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 479 (727)
...+..+...|...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+....+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------------- 95 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-------------- 95 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------------
Confidence 3456667777777888888888877776542 1123334444444555555555555554444432
Q ss_pred HHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHH
Q 004856 480 YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGR 558 (727)
Q Consensus 480 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~ 558 (727)
+.+...+..+...+...|++++|.+.+++.......| ....+..+..++...|++++|.
T Consensus 96 --------------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (234)
T TIGR02521 96 --------------------PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAE 155 (234)
T ss_pred --------------------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHH
Confidence 2233445555555556666666666666655432112 2334444555566666666666
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004856 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISM 635 (727)
Q Consensus 559 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 635 (727)
..+++.... .+.+...+..+...+...|++++|.+.+++. ...| +...+..+...+...|+.+.|....+.+...
T Consensus 156 ~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 156 KYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 666665542 1222445555666666666666666666554 2222 3334444444455666666666665555443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.3e-09 Score=98.50 Aligned_cols=228 Identities=12% Similarity=0.039 Sum_probs=131.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhc
Q 004856 404 SSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC 483 (727)
Q Consensus 404 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 483 (727)
+.|..+|.+.|.+.+|.+.|+.-... .|-..||..+-.+|.+...+..|..++..-.+.- +.++....-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g-------- 295 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLG-------- 295 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-Cchhhhhhh--------
Confidence 45667777777777777777766654 3444455555555555555555554444433321 222222223
Q ss_pred CCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004856 484 GCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKE 563 (727)
Q Consensus 484 g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 563 (727)
+...+-..++.++|.++|+...+.. +.|......+...|.-.++.+-|+.++++
T Consensus 296 -------------------------~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRR 349 (478)
T KOG1129|consen 296 -------------------------QARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRR 349 (478)
T ss_pred -------------------------hHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHH
Confidence 3344444455555555555554421 11333444444444445555555555555
Q ss_pred hHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCC--HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004856 564 MKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM---PFKPD--ARVWGPLLSACKMHSETELAELTAEKLISMEPE 638 (727)
Q Consensus 564 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 638 (727)
+.+- |+ .+++.|+.+.-+|.-.++++-++..|++. .-.|+ ..+|..+.......||+..|.+.|+-++..+|+
T Consensus 350 iLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~ 427 (478)
T KOG1129|consen 350 ILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ 427 (478)
T ss_pred HHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc
Confidence 5543 32 23444555554444555555555555444 11222 235666666667788888888888888888888
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004856 639 NAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 639 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 670 (727)
+..+++.|+-.-.+.|+.++|+.+++..+...
T Consensus 428 h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 428 HGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 88888888888888899999988888776654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-07 Score=97.97 Aligned_cols=237 Identities=15% Similarity=0.184 Sum_probs=151.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCC----------CChh-HHHHHHHHHHhcCChHHHHHHHHHHHHC-----C-CC
Q 004856 370 SVHNSLIDMYCECEDLNCARKIFDSVKT----------KTVV-SWSSMIKGYVTHDQSLEALRLFSEMKLE-----G-VE 432 (727)
Q Consensus 370 ~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~ 432 (727)
.+...|..+|...|+++.|+.+++...+ +.+. ..+.+...|...+++++|..+|+++... | ..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3444566666667777766666654432 1221 2344667788899999999999888642 1 11
Q ss_pred CC-HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccC-CCCCHH-HHHHH
Q 004856 433 VD-FVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI-DSKDII-TWNSM 509 (727)
Q Consensus 433 p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~-~~~~l 509 (727)
|. ..+++.|-.+|.+.|++++|...++.+. ++++.... ..|.+. .++.+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al----------------------------~I~~~~~~~~~~~v~~~l~~~ 331 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERAL----------------------------EIYEKLLGASHPEVAAQLSEL 331 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHH----------------------------HHHHHhhccChHHHHHHHHHH
Confidence 11 1233444444555555555544433322 22222111 133333 45566
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC---CCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc-----CCCCC-hhH
Q 004856 510 ISAYAKHGDWSQCFKLYTQMKQS---DVRPD----LITFLGLLTACVNAGLVEEGRIIFKEMKESY-----GYEPS-QEH 576 (727)
Q Consensus 510 i~~~~~~g~~~~A~~~~~~m~~~---g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~ 576 (727)
+..|...+++++|..++++..+. -+.++ ..+++.|...|.+.|++++|.++++++.... +..+. ...
T Consensus 332 ~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~ 411 (508)
T KOG1840|consen 332 AAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKP 411 (508)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHH
Confidence 77788888888888888766542 12233 3578899999999999999999999877542 11222 346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCH-hhHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 004856 577 YASMVNLLGRAGHMDEARELVKDM--------PFKPDA-RVWGPLLSACKMHSETELAELTAEKLIS 634 (727)
Q Consensus 577 ~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 634 (727)
++.|...|.+.++..+|.++|.+. +..|+. .+|..|...|...|+++.|+++.+++..
T Consensus 412 l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 412 LNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 778888898899988888888776 233444 4788888889999999999999988874
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.1e-09 Score=96.37 Aligned_cols=191 Identities=12% Similarity=0.071 Sum_probs=159.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHH-HHHHHHHHHhcC
Q 004856 474 TAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLIT-FLGLLTACVNAG 552 (727)
Q Consensus 474 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g 552 (727)
+-+...|.+.|.+.+|+..|+.-....|-+.+|-.|-.+|.+..++..|+.++.+-.+. .|-.+| .....+.+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 45667889999999999999986655888899999999999999999999999999884 565555 456777888899
Q ss_pred CHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHhhHHHHHHHHHHcCCHHHHHHHH
Q 004856 553 LVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM---PFKPDARVWGPLLSACKMHSETELAELTA 629 (727)
Q Consensus 553 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 629 (727)
+.++|.++++...+. .+.+++...++...|.-.+++|-|+.+++++ +. -++..|+.+.-.|.-.++++.+...+
T Consensus 305 ~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred hHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 999999999999864 3446777888888999999999999999876 43 36677888888888999999999999
Q ss_pred HHHHccC--CC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 630 EKLISME--PE-NAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 630 ~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
++++... |+ -.+.|..++.+....|++.-|.+-|+.....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~ 424 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS 424 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc
Confidence 9999853 32 4578999999999999999999988876543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.4e-08 Score=108.62 Aligned_cols=212 Identities=13% Similarity=0.030 Sum_probs=162.0
Q ss_pred ChHHHHHHHHHHHHhCCCchHhHHHHHHHHHH---------hcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCCh
Q 004856 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYA---------KCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDW 519 (727)
Q Consensus 450 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~ 519 (727)
++++|..+++...+.. +.+...+..+..+|. ..+++++|...+++.....| +...|..+...+...|++
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 4578888888887764 233455555554443 23458999999998665555 677888888899999999
Q ss_pred HHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHH
Q 004856 520 SQCFKLYTQMKQSDVRPD-LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQ-EHYASMVNLLGRAGHMDEARELV 597 (727)
Q Consensus 520 ~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~ 597 (727)
++|+..|++..+. .|+ ...+..+..++...|++++|...++++.+. .|+. ..+..+...+...|++++|...+
T Consensus 355 ~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 355 IVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 9999999999984 564 667888999999999999999999999854 5553 23334455567789999999999
Q ss_pred HhC--CCCCCHh-hHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 598 KDM--PFKPDAR-VWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 598 ~~~--~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
++. ...|+.. .+..+...+...|+.++|...++++....|.+......+...|...| ++|...++.+.+.
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 887 2235444 45556666889999999999999988888877777778888888888 4888877776654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.8e-05 Score=81.69 Aligned_cols=159 Identities=16% Similarity=0.247 Sum_probs=122.8
Q ss_pred cCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 004856 483 CGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFK 562 (727)
Q Consensus 483 ~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 562 (727)
.+.++.|.+.-++.. ....|..+..+-.+.|...+|++-|-+. .|+..|.-++..+.+.|.|++-.+++.
T Consensus 1088 i~~ldRA~efAe~~n----~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~ 1157 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERCN----EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLL 1157 (1666)
T ss_pred hhhHHHHHHHHHhhC----ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 345555555554433 3467999999999999999998877432 367789999999999999999999998
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcch
Q 004856 563 EMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGN 642 (727)
Q Consensus 563 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 642 (727)
..+++ .-.|.+. +.||-+|++.+++.+-++++. -|+..-...+..-|...|.++.|.-+|. +.+.
T Consensus 1158 MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~--------~vSN 1222 (1666)
T KOG0985|consen 1158 MARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYS--------NVSN 1222 (1666)
T ss_pred HHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHH--------Hhhh
Confidence 88876 6666654 578999999999999888774 4777777788888999999999988887 3456
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 004856 643 YVLLSNIYAAAGKWNGVAKMRTFL 666 (727)
Q Consensus 643 ~~~l~~~~~~~g~~~~a~~~~~~m 666 (727)
|..|+..+...|.+..|...-++.
T Consensus 1223 ~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1223 FAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Confidence 777777777777777776554443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.4e-06 Score=80.77 Aligned_cols=263 Identities=11% Similarity=-0.019 Sum_probs=137.0
Q ss_pred CCChhHHhHHHHHhhcCCChHHHHHHHhcCCCCCeehHHHH---HHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHH
Q 004856 265 CKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIM---ISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAV 341 (727)
Q Consensus 265 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 341 (727)
+.++.....+...|...|+.++|+..|++...-|+.+...| .-.+.+.|++++...+...+.... +-....|..-.
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 33445555556666666666666666665544333222221 122345566666655555554321 11222222222
Q ss_pred HHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC--C-CChhHHHHHHHHHHhcCChHH
Q 004856 342 SSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK--T-KTVVSWSSMIKGYVTHDQSLE 418 (727)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~ 418 (727)
..+-..++++.|..+-+..++.. +.+...+-.-...+...|+.++|.-.|+... . -+..+|..|+..|...|++.+
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence 23334455555555555554432 1122223233345566777787777776544 2 266788888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH-HHHhc-CCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 004856 419 ALRLFSEMKLEGVEVDFVTIINIL-PACVN-IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEE 496 (727)
Q Consensus 419 A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 496 (727)
|.-+-+...+. ...+..+...+. ..|.- ...-++|..+++...+.. +.-....+.+...+...|..+++..++++.
T Consensus 387 A~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~ 464 (564)
T KOG1174|consen 387 ANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKH 464 (564)
T ss_pred HHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 77666554432 222333433331 22221 222355666655554432 112233345555566666666666666664
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004856 497 KIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ 531 (727)
Q Consensus 497 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 531 (727)
....||....+.|...+...+.+++|++.|.....
T Consensus 465 L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 465 LIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44456666666666666666666666666666655
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.00 E-value=5e-08 Score=86.90 Aligned_cols=162 Identities=14% Similarity=0.162 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHH
Q 004856 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD-LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS-QEHYASMVN 582 (727)
Q Consensus 505 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 582 (727)
+...+.-+|...|+...|..-+++.++. .|+ ..++..+...|.+.|..+.|.+.|+...+ +.|+ ..+.|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhH
Confidence 3445667889999999999999999984 564 66888999999999999999999999884 4554 668888999
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhH
Q 004856 583 LLGRAGHMDEARELVKDMPFKPD----ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNG 658 (727)
Q Consensus 583 ~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 658 (727)
.+|..|++++|...|+++-..|+ ..+|..+.....+.|+.+.|+..+++.++.+|+.+.+...+.....+.|++-+
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 99999999999999998843442 34777777777889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 004856 659 VAKMRTFLRDRGL 671 (727)
Q Consensus 659 a~~~~~~m~~~~~ 671 (727)
|..+++.....+.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999998877754
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.8e-07 Score=91.59 Aligned_cols=228 Identities=11% Similarity=-0.026 Sum_probs=144.3
Q ss_pred CChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHH
Q 004856 414 DQSLEALRLFSEMKLEG-VEVD--FVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAG 490 (727)
Q Consensus 414 g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 490 (727)
+..+.++.-+.++.... ..|+ ...|......+...|+.++|...+....+.. +.+...|+.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34455555555555421 1222 2334444455666666666666666666654 345677778888888888888888
Q ss_pred HHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC
Q 004856 491 ELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYG 569 (727)
Q Consensus 491 ~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 569 (727)
..|++.....| +...|..+..++...|++++|++.|++..+. .|+..........+...++.++|...++.....
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-- 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-- 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh--
Confidence 88888655455 4678888888899999999999999999884 565432222222344567899999999776543
Q ss_pred CCCChhHHHHHHHHHHhcCCHH--HHHHHHHhC-CC----CC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCc-
Q 004856 570 YEPSQEHYASMVNLLGRAGHMD--EARELVKDM-PF----KP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENA- 640 (727)
Q Consensus 570 ~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~~-~~----~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~- 640 (727)
..|+...+ .++..+ .|+.. ++.+.+.+. .. .| ....|..+...+.+.|+.++|+..|+++++.+|.+.
T Consensus 195 ~~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 34443222 333333 44443 333333322 11 12 234788888889999999999999999999997543
Q ss_pred chHHHHHHH
Q 004856 641 GNYVLLSNI 649 (727)
Q Consensus 641 ~~~~~l~~~ 649 (727)
.....++..
T Consensus 272 e~~~~~~e~ 280 (296)
T PRK11189 272 EHRYALLEL 280 (296)
T ss_pred HHHHHHHHH
Confidence 333344443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.9e-05 Score=77.30 Aligned_cols=122 Identities=18% Similarity=0.163 Sum_probs=79.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHH---------------hcCCC---CChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC
Q 004856 544 LLTACVNAGLVEEGRIIFKEMKE---------------SYGYE---PSQEHYASMVNLLGRAGHMDEARELVKDMPFKPD 605 (727)
Q Consensus 544 ll~~~~~~g~~~~a~~~~~~~~~---------------~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~ 605 (727)
.|.+++....|.+|.++-+++.. .-|-- .++. .-+-++++...++|++|++.-.+-..+|-
T Consensus 1245 aida~~~~eewakakqvake~~p~~~~~idk~yke~lknegkl~eli~vd-viaaidl~ien~qwdk~idtak~qnykpi 1323 (1636)
T KOG3616|consen 1245 AIDAFCEAEEWAKAKQVAKELDPEMEDEIDKHYKEFLKNEGKLDELIDVD-VIAAIDLMIENDQWDKAIDTAKKQNYKPI 1323 (1636)
T ss_pred HHHHHHhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHhccCccccccchh-HHHHHHHHHhcccHHHHHHHHHhcccHHH
Confidence 46677777777777666554322 10110 1111 23457889999999999998888878887
Q ss_pred HhhHHHHHHH-HHHcCCHHHHHHHHHHHHc-cCCCCcchHHHHHH-HHHhcC-ChhHHHHHHHHH
Q 004856 606 ARVWGPLLSA-CKMHSETELAELTAEKLIS-MEPENAGNYVLLSN-IYAAAG-KWNGVAKMRTFL 666 (727)
Q Consensus 606 ~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~l~~-~~~~~g-~~~~a~~~~~~m 666 (727)
..-|-++..+ +.+.|+...+..++++--. -+|.|...|..+.. ++.+-| +.++|..-+-.+
T Consensus 1324 l~kyva~yaa~li~~~d~aq~lal~~q~ga~anpanfniyk~i~ed~lakpgt~~~eay~e~a~l 1388 (1636)
T KOG3616|consen 1324 LDKYVALYAAHLIHEGDLAQALALLEQHGAPANPANFNIYKLIFEDMLAKPGTNCAEAYHEIADL 1388 (1636)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhCCCCCcccccHHHHHHHHHhcCCCcchHHHHHHHHHH
Confidence 7788888777 7889999999999887644 46777777765543 333333 555554444333
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.7e-06 Score=82.95 Aligned_cols=371 Identities=12% Similarity=0.073 Sum_probs=184.2
Q ss_pred hhhccCCCChhhhhhh-ccCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCC-ChhhHHHHHHHhcccCChhHH
Q 004856 175 FYIKCDGGFENEKGMI-QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEF-DSGTLINLLRSTVELKSLELG 252 (727)
Q Consensus 175 ~y~~~~~g~~~~a~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a 252 (727)
+||....+..++|... +...+.|...-..-...+-+.|++++|+++|+.+.+++..- |...-..++.+-...
T Consensus 86 AYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l------ 159 (652)
T KOG2376|consen 86 AYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL------ 159 (652)
T ss_pred HHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh------
Confidence 3443333666666665 43323333233344456788899999999999998765321 122222222221110
Q ss_pred HHHHHHHHHhcCCCChhHHhHH---HHHhhcCCChHHHHHHHhcC--------CCCCee----------hHHHHHHHHHh
Q 004856 253 RIVHCVAVVSDFCKDLSVNTAL---LSMYSKLASLEDAKMLFDKM--------SDKDRV----------VWNIMISAYYQ 311 (727)
Q Consensus 253 ~~~~~~~~~~g~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~~--------~~~~~~----------~~~~li~~~~~ 311 (727)
.. ..+......| ..+|..+ ...+...|++.+|+++++.. .+.|.. .---|.-.+-.
T Consensus 160 -~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 160 -QV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred -hH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 11 0111111122 2233333 34556789999999998877 221111 11223445667
Q ss_pred cCCchHHHHHHHHHHHcCCCCChhhHHHHH---HHhhcCCChHH--HHHHHHHHHH-----------hCCCCChhHHHHH
Q 004856 312 SGFPKESLELLMCMVRSGFRADLFTAIAAV---SSISTMKNIEW--GKQMHANVLR-----------NGSDYQVSVHNSL 375 (727)
Q Consensus 312 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll---~~~~~~~~~~~--a~~~~~~~~~-----------~g~~~~~~~~~~l 375 (727)
.|+.++|..++....+.. .+|........ .+.....++-. ....++.... ..-.....--+.+
T Consensus 237 ~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~l 315 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNAL 315 (652)
T ss_pred hcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999988764 34443322222 22222222211 1111111100 0000011111233
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCC-hhHHHHHHHHHH--hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChH
Q 004856 376 IDMYCECEDLNCARKIFDSVKTKT-VVSWSSMIKGYV--THDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452 (727)
Q Consensus 376 i~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 452 (727)
+.+| .+..+.+.++-...+... ...+.+++.... +...+.++.+++...-+....-........+......|+++
T Consensus 316 L~l~--tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~ 393 (652)
T KOG2376|consen 316 LALF--TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPE 393 (652)
T ss_pred HHHH--hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Confidence 3333 345566666666666543 233334433322 22246666666666655422222344455556667778888
Q ss_pred HHHHHHH--------HHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccC----CCCCH----HHHHHHHHHHHHc
Q 004856 453 HVKYLHG--------YSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI----DSKDI----ITWNSMISAYAKH 516 (727)
Q Consensus 453 ~a~~~~~--------~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~----~~~~~li~~~~~~ 516 (727)
.|..++. .+.+.+..| .+..+++.+|.+.++-+.|..++++... ..+.. .+|.-....-.++
T Consensus 394 ~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~ 471 (652)
T KOG2376|consen 394 VALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRH 471 (652)
T ss_pred HHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhc
Confidence 8888777 444443333 3445566667777766666666654211 01111 2222233333456
Q ss_pred CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 004856 517 GDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIF 561 (727)
Q Consensus 517 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 561 (727)
|+.++|..+++++.+.. ++|..+...++.+|++. +.+.|..+-
T Consensus 472 G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~ 514 (652)
T KOG2376|consen 472 GNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLS 514 (652)
T ss_pred CchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHh
Confidence 77777777777776642 44666666777766664 455555543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.9e-06 Score=83.07 Aligned_cols=419 Identities=10% Similarity=-0.018 Sum_probs=227.8
Q ss_pred hCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHH
Q 004856 210 QNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKM 289 (727)
Q Consensus 210 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 289 (727)
..+++...+++.+.+.+ +.+-...|....--.+...|+.++|.......++.+ ..+.+.|..+.-.+....++++|.+
T Consensus 19 E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHH
Confidence 34667777777777766 223333444444444566778888887777777644 3355667766666667777888888
Q ss_pred HHhcCCC---CCeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-ChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCC
Q 004856 290 LFDKMSD---KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA-DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS 365 (727)
Q Consensus 290 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 365 (727)
.|..... .|...|.-+.-.-++.++++...+.-.+..+. .| ....|..+..+.--.|+...|..+.+...+...
T Consensus 97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8876543 35556666666666777777777766666553 33 344566666666677777888888777776642
Q ss_pred -CCChhHHHHHH------HHHHhcCCHHHHHHHHhcCCCC--Chh-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 004856 366 -DYQVSVHNSLI------DMYCECEDLNCARKIFDSVKTK--TVV-SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF 435 (727)
Q Consensus 366 -~~~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 435 (727)
.|+...+.-.. ....+.|.++.|.+.+...... |-. .-......+.+.++.++|..++..++.. .||.
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn 252 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDN 252 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cchh
Confidence 34444332222 2334567777777766654432 222 2233445567777888888888877765 4666
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHH-HHHHhccCCCCCHHHHHHHHHHHH
Q 004856 436 VTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAG-ELFDEEKIDSKDIITWNSMISAYA 514 (727)
Q Consensus 436 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~li~~~~ 514 (727)
.-|.-.+..+. ++-.+.-++. .+|.......|....-.-+--...
T Consensus 253 ~~Yy~~l~~~l----------------------------------gk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl 298 (700)
T KOG1156|consen 253 LDYYEGLEKAL----------------------------------GKIKDMLEALKALYAILSEKYPRHECPRRLPLSVL 298 (700)
T ss_pred HHHHHHHHHHH----------------------------------HHHhhhHHHHHHHHHHHhhcCcccccchhccHHHh
Confidence 65544443332 1111111111 222222211111000000000001
Q ss_pred H-cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHH----HHHHHHHhHHh--c-----C--CCCChh--HHH
Q 004856 515 K-HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEE----GRIIFKEMKES--Y-----G--YEPSQE--HYA 578 (727)
Q Consensus 515 ~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~----a~~~~~~~~~~--~-----~--~~p~~~--~~~ 578 (727)
. ..-.+..-+.+..+.++|+++--..+.++ |-.....+- +..+...+... + + -+|... ++-
T Consensus 299 ~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SL---yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y 375 (700)
T KOG1156|consen 299 NGEELKEIVDKYLRPLLSKGVPSVFKDLRSL---YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLY 375 (700)
T ss_pred CcchhHHHHHHHHHHHhhcCCCchhhhhHHH---HhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHH
Confidence 1 11123334455666666655432222222 211111111 11111111100 0 0 134433 334
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCCHh-hHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCCh
Q 004856 579 SMVNLLGRAGHMDEARELVKDM-PFKPDAR-VWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKW 656 (727)
Q Consensus 579 ~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 656 (727)
.++..+-+.|+++.|..+++.+ +..|+.+ .|..-...+...|+.++|-..++++.+++-.|...-..-++-..++.+.
T Consensus 376 ~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i 455 (700)
T KOG1156|consen 376 FLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEI 455 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHcccc
Confidence 5667777788888888888776 4455544 2333334467777888888888888877765555544566666777788
Q ss_pred hHHHHHHHHHHhCCC
Q 004856 657 NGVAKMRTFLRDRGL 671 (727)
Q Consensus 657 ~~a~~~~~~m~~~~~ 671 (727)
++|.++.......|.
T Consensus 456 ~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 456 EEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHhhhccc
Confidence 888887777766654
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.6e-06 Score=84.34 Aligned_cols=383 Identities=14% Similarity=0.083 Sum_probs=229.7
Q ss_pred cccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCC---CCeehHHHHHHHHHhcCCchHHHH
Q 004856 244 VELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD---KDRVVWNIMISAYYQSGFPKESLE 320 (727)
Q Consensus 244 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 320 (727)
-..+++..+....+.+++. .+....+.....-.+...|+.++|....+.-.. ++.+.|..+.-.+-...++++|++
T Consensus 18 yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHH
Confidence 3455666677777777663 222222222222234456788888877766554 356678888877777888888888
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---C
Q 004856 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK---T 397 (727)
Q Consensus 321 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~ 397 (727)
.|+..... .||... ++.-|.-.-.+.|+++.....-.... .
T Consensus 97 cy~nAl~~--~~dN~q----------------------------------ilrDlslLQ~QmRd~~~~~~tr~~LLql~~ 140 (700)
T KOG1156|consen 97 CYRNALKI--EKDNLQ----------------------------------ILRDLSLLQIQMRDYEGYLETRNQLLQLRP 140 (700)
T ss_pred HHHHHHhc--CCCcHH----------------------------------HHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 88887754 344322 12222222223333333333222222 2
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHH------HHHhcCCChHHHHHHHHHHHHhCCCchH
Q 004856 398 KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG-VEVDFVTIINIL------PACVNIGALEHVKYLHGYSMKLGLNSLS 470 (727)
Q Consensus 398 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll------~a~~~~~~~~~a~~~~~~~~~~~~~~~~ 470 (727)
..-..|..++.++.-.|++..|..+.++..+.. -.|+...|.-.. ......|.++.+.+.+...... +....
T Consensus 141 ~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkl 219 (700)
T KOG1156|consen 141 SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKL 219 (700)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHH
Confidence 245678888888888999999999988887654 346655553322 2345567777777665443322 11122
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHH-HHHHcCChHHHH-HHHHHHHHCCCCCChHHHHHH-HHH
Q 004856 471 SVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMIS-AYAKHGDWSQCF-KLYTQMKQSDVRPDLITFLGL-LTA 547 (727)
Q Consensus 471 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~-~~~~~m~~~g~~p~~~t~~~l-l~~ 547 (727)
..-..-.+.+.+.+++++|..++..+....||...|.-... ++.+-.+.-+++ .+|....+. .|....-..+ ++.
T Consensus 220 a~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsv 297 (700)
T KOG1156|consen 220 AFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSV 297 (700)
T ss_pred HHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHH
Confidence 22334556788999999999999997766888777665544 443444444555 666666542 2322211111 112
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH----HHHHHHhC-C------------CCCCHhhHH
Q 004856 548 CVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE----ARELVKDM-P------------FKPDARVWG 610 (727)
Q Consensus 548 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~~-~------------~~p~~~~~~ 610 (727)
.......+..-.++..+.++ |+++ ++..+...|-.-...+- +..+...+ + -.|....|.
T Consensus 298 l~~eel~~~vdkyL~~~l~K-g~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt 373 (700)
T KOG1156|consen 298 LNGEELKEIVDKYLRPLLSK-GVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWT 373 (700)
T ss_pred hCcchhHHHHHHHHHHHhhc-CCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHH
Confidence 22222334444555666655 6655 33334444432222111 11222222 1 256777777
Q ss_pred HHHHH--HHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004856 611 PLLSA--CKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 611 ~ll~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 670 (727)
...-+ +-..|+++.|+...+.+++..|.-...|..-+.++.+.|..++|...+++..+-.
T Consensus 374 ~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 374 LYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 76555 8899999999999999999999888889899999999999999999999887653
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-05 Score=84.60 Aligned_cols=433 Identities=15% Similarity=0.055 Sum_probs=230.7
Q ss_pred CCCchhHHHHHHHhhhccCCCChhhhhhh-ccC-CC--CCcccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhh-H
Q 004856 162 FDSFDDVGDALVEFYIKCDGGFENEKGMI-QRK-FK--DLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGT-L 236 (727)
Q Consensus 162 ~~~~~~~~~~li~~y~~~~~g~~~~a~~~-~~~-~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~ 236 (727)
+..|..+|..|.-....| |+++.+-+. ++. +. .....|+.+-..|...|.-..|+.+++.-....-.|+..+ +
T Consensus 319 ~qnd~ai~d~Lt~al~~~--g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRC--GQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hcchHHHHHHHHHHHHHH--HHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 345566666666666666 666655554 332 21 2223366666666666666666666665443322233222 2
Q ss_pred HHHHHHhc-ccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCCCCeehHHHHHHHHHhc---
Q 004856 237 INLLRSTV-ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQS--- 312 (727)
Q Consensus 237 ~~ll~~~~-~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~--- 312 (727)
...-+.|. +.+..+++..+-..++...-. +.++ .....|-.+.-+|...
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~--------------~~~~-------------l~~~~~l~lGi~y~~~A~~ 449 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGG--------------QRSH-------------LKPRGYLFLGIAYGFQARQ 449 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhh--------------hhhh-------------hhhhHHHHHHHHHHhHhhc
Confidence 22222332 234444444444444431100 0000 0122222222222211
Q ss_pred --------CCchHHHHHHHHHHHcC-CCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 004856 313 --------GFPKESLELLMCMVRSG-FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECE 383 (727)
Q Consensus 313 --------g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 383 (727)
....++++.+++..+.+ -.|+...|.++- ++..++++.|.+...+..+.+-..+...|..|.-.+...+
T Consensus 450 a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~k 527 (799)
T KOG4162|consen 450 ANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQK 527 (799)
T ss_pred CCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 12345666666665543 233333333333 3445567777777777777655666666776666677777
Q ss_pred CHHHHHHHHhcCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHH
Q 004856 384 DLNCARKIFDSVKTK---TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGY 460 (727)
Q Consensus 384 ~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 460 (727)
++.+|+.+.+...+. |.+....-+..-..-++.++++.....+..- --+...+.. .++-....+....
T Consensus 528 r~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--we~~~~~q~-------~~~~g~~~~lk~~ 598 (799)
T KOG4162|consen 528 RLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLAL--WEAEYGVQQ-------TLDEGKLLRLKAG 598 (799)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH--HHhhhhHhh-------hhhhhhhhhhhcc
Confidence 777777766654322 1111111122222356666666655555431 000000000 0000001111110
Q ss_pred HHH--hCCCchHhHHHHHHHHHH---hcCCHHHHHHHHHhccCCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004856 461 SMK--LGLNSLSSVNTAIFISYA---KCGCIEMAGELFDEEKIDSKD------IITWNSMISAYAKHGDWSQCFKLYTQM 529 (727)
Q Consensus 461 ~~~--~~~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m 529 (727)
+.- ........++..+..... +.-..+.....+...+ .|+ ...|......+.+.++.++|...+.+.
T Consensus 599 l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~--~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea 676 (799)
T KOG4162|consen 599 LHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLP--GPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEA 676 (799)
T ss_pred cccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccC--CCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 000 000111122222211111 1111111111111122 233 245667777888999999999888887
Q ss_pred HHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHH--HHHhC-CCCC
Q 004856 530 KQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGHMDEARE--LVKDM-PFKP 604 (727)
Q Consensus 530 ~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~~-~~~p 604 (727)
.. +.| ....|......+...|.+++|.+.|.... .+.|+ +....++..++.+.|+..-|.. ++..+ .+.|
T Consensus 677 ~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp 751 (799)
T KOG4162|consen 677 SK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP 751 (799)
T ss_pred Hh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC
Confidence 76 445 56677777788888999999999998887 56777 5688899999999998777776 77777 6677
Q ss_pred -CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcc
Q 004856 605 -DARVWGPLLSACKMHSETELAELTAEKLISMEPENAG 641 (727)
Q Consensus 605 -~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 641 (727)
+...|..+...+.+.|+.+.|...|.-+.++++.+|.
T Consensus 752 ~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 752 LNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 5678999999999999999999999999999876653
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.4e-06 Score=85.79 Aligned_cols=61 Identities=5% Similarity=0.041 Sum_probs=42.6
Q ss_pred CCCCcchHHHHH--HHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHH
Q 004856 92 TSPNSLLYGTIL--KNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVV 158 (727)
Q Consensus 92 ~~~~~~~~n~li--~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 158 (727)
..-|..|-..|+ +-|+.-|+.+.|.+-.+..+. ...|..+.+.|.+..+++.|+-.+..|.
T Consensus 722 e~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~ 784 (1416)
T KOG3617|consen 722 ENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMK 784 (1416)
T ss_pred cccCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhh
Confidence 334556666666 456777888888877766543 3467788888888888888877776663
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.4e-05 Score=75.53 Aligned_cols=289 Identities=13% Similarity=0.102 Sum_probs=191.6
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHH---HHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhcCCC
Q 004856 375 LIDMYCECEDLNCARKIFDSVKTKTVVSWSSMI---KGYVTHDQSLEALRLFSEMKLEGVEVDFVTI-INILPACVNIGA 450 (727)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~a~~~~~~ 450 (727)
|...+...|++..|..-|....+-|+..|-++. ..|...|+..-|+.-|.+.++. +||-..- ..-...+.+.|.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhccc
Confidence 344455566777777777776666665555543 4566677777777777766663 5664322 111234556777
Q ss_pred hHHHHHHHHHHHHhCCCc--hHh------------HHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHH
Q 004856 451 LEHVKYLHGYSMKLGLNS--LSS------------VNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAK 515 (727)
Q Consensus 451 ~~~a~~~~~~~~~~~~~~--~~~------------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~ 515 (727)
++.|..=|+.+++..... ... .....+..+.-.|+...|++....+....| |...+..-..+|..
T Consensus 122 le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~ 201 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIA 201 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHh
Confidence 777777777666643211 111 111223345567888888888888665555 77788888889999
Q ss_pred cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChh----HHHHH---H------H
Q 004856 516 HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE----HYASM---V------N 582 (727)
Q Consensus 516 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l---i------~ 582 (727)
.|++..|+.=++..-+.. .-|..++.-+...+...|+.+.++...++.. .+.||-. .|..| + .
T Consensus 202 ~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K~les~e 277 (504)
T KOG0624|consen 202 EGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVKSLESAE 277 (504)
T ss_pred cCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 999999988777766532 3355666677777888888888888877776 4567633 22221 1 1
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCCH--hhHH---HHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCCh
Q 004856 583 LLGRAGHMDEARELVKDM-PFKPDA--RVWG---PLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKW 656 (727)
Q Consensus 583 ~~~~~g~~~~A~~~~~~~-~~~p~~--~~~~---~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 656 (727)
...+.++|.++.+-.++. ...|.. +.++ .+-..+...+++.+|++.+.++++.+|+|..++..-+.+|.-..++
T Consensus 278 ~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~Y 357 (504)
T KOG0624|consen 278 QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMY 357 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHH
Confidence 233456666666666554 445542 2333 3334466788999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhC
Q 004856 657 NGVAKMRTFLRDR 669 (727)
Q Consensus 657 ~~a~~~~~~m~~~ 669 (727)
++|+.-++...+.
T Consensus 358 D~AI~dye~A~e~ 370 (504)
T KOG0624|consen 358 DDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887665
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.8e-05 Score=83.61 Aligned_cols=454 Identities=10% Similarity=0.019 Sum_probs=242.9
Q ss_pred CCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHH--HhcccCChhHHHHHHHHHHHhcCCCChhH
Q 004856 193 KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLR--STVELKSLELGRIVHCVAVVSDFCKDLSV 270 (727)
Q Consensus 193 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 270 (727)
....|..+|..+..+|.+.|++..|+++|.+... +.|+. +|...-. .-+..|...++...++.++..- ..-...
T Consensus 591 ~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~-s~e~~~ 666 (1238)
T KOG1127|consen 591 TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAF-SLERTG 666 (1238)
T ss_pred CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHh
Confidence 4456777788888888888888888888887765 34543 2322222 2356678888888777776532 011111
Q ss_pred HhHHHHHhh-------cCCChHHHHHHHhcCCC-----------CCeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC
Q 004856 271 NTALLSMYS-------KLASLEDAKMLFDKMSD-----------KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA 332 (727)
Q Consensus 271 ~~~li~~~~-------~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 332 (727)
.+.+...+. -.|-...|...|++-.+ .+...|-.+ ..|..+|-+.. .+ .|
T Consensus 667 q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a----------sdac~~f~q~e-~~-~v 734 (1238)
T KOG1127|consen 667 QNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA----------SDACYIFSQEE-PS-IV 734 (1238)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH----------hHHHHHHHHhc-cc-ch
Confidence 122222222 22223333333332211 111222221 23334444433 11 33
Q ss_pred ChhhHHHHHHHhhcCCCh---H---HHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cC----CHHHHHHHHhcCC--
Q 004856 333 DLFTAIAAVSSISTMKNI---E---WGKQMHANVLRNGSDYQVSVHNSLIDMYCE----CE----DLNCARKIFDSVK-- 396 (727)
Q Consensus 333 ~~~t~~~ll~~~~~~~~~---~---~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g----~~~~A~~~~~~~~-- 396 (727)
+......+..-.-..+.. + .|-+.+- ....+..+...|..|+.-|.+ +| +...|...+....
T Consensus 735 n~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~--~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L 812 (1238)
T KOG1127|consen 735 NMHYLIILSKQLEKTGALKKNDLLFLGYECGI--AHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL 812 (1238)
T ss_pred HHHHHHHHHHHHHhcccCcchhHHHHHHHHhh--HHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH
Confidence 333333333322223322 1 0111110 111122223444444443333 22 2345666665543
Q ss_pred -CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHH
Q 004856 397 -TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTA 475 (727)
Q Consensus 397 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 475 (727)
..+...||.|.-. ...|.+.-|...|-+-.... +....+|..+--.|....+++.|...+....... +.+...+-.
T Consensus 813 ~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG 889 (1238)
T KOG1127|consen 813 CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLG 889 (1238)
T ss_pred hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHH
Confidence 3467788887665 55566666666665544431 3345677777777888889999998888777654 334444444
Q ss_pred HHHHHHhcCCHHHHHHHHHh-----ccCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---------CCCCCChHH
Q 004856 476 IFISYAKCGCIEMAGELFDE-----EKID-SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ---------SDVRPDLIT 540 (727)
Q Consensus 476 li~~~~~~g~~~~A~~~~~~-----~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---------~g~~p~~~t 540 (727)
........|+.-++..+|.. +... -|+..-|-+...-...+|+.++-+...+++-. .|.+-+...
T Consensus 890 ~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fA 969 (1238)
T KOG1127|consen 890 EALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFA 969 (1238)
T ss_pred HHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHH
Confidence 44444567777777777775 2211 35555565555555667766655544433321 123335677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHH----HHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 004856 541 FLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYA----SMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSAC 616 (727)
Q Consensus 541 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~ 616 (727)
|........+.+.+.+|.+...+...-...+-+...|+ ...+.++..|.++.|..-+......-+..+..+-+..
T Consensus 970 y~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l- 1048 (1238)
T KOG1127|consen 970 YAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL- 1048 (1238)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-
Confidence 88888877888888777777666542211233444444 3445566678888777766655434344443333333
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCcc---hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004856 617 KMHSETELAELTAEKLISMEPENAG---NYVLLSNIYAAAGKWNGVAKMRTFLRD 668 (727)
Q Consensus 617 ~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~ 668 (727)
.-.++++++...|++++.+-..+.. ....++......+.-+.|...+-+...
T Consensus 1049 Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1049 FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 3467899999999999986544333 233445556666777777776555443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.4e-06 Score=91.45 Aligned_cols=261 Identities=11% Similarity=0.064 Sum_probs=145.4
Q ss_pred HHHHhcCCHHHHHHHHhcCCCC--Chh-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHH
Q 004856 377 DMYCECEDLNCARKIFDSVKTK--TVV-SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453 (727)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 453 (727)
..+...|++++|.+.++.-... |.. ........+.+.|+.++|..+|+.+.+. .|+...|...+..|.....
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~--- 86 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQL--- 86 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhc---
Confidence 3456677888887777664432 333 3445566677777778888887777775 4666655444443331000
Q ss_pred HHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHC
Q 004856 454 VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDW-SQCFKLYTQMKQS 532 (727)
Q Consensus 454 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~ 532 (727)
+ ......+...++++++....|.......+.-.+.....+ ..+...+..+..+
T Consensus 87 -----------~---------------~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K 140 (517)
T PF12569_consen 87 -----------Q---------------LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK 140 (517)
T ss_pred -----------c---------------cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhc
Confidence 0 000122333333333322223222221111111111112 2344455666666
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc-------------CCCCChh--HHHHHHHHHHhcCCHHHHHHHH
Q 004856 533 DVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESY-------------GYEPSQE--HYASMVNLLGRAGHMDEARELV 597 (727)
Q Consensus 533 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------------~~~p~~~--~~~~li~~~~~~g~~~~A~~~~ 597 (727)
|+++ +|+.|-..|......+-...++....... .-+|+.. ++..+...|...|++++|++++
T Consensus 141 gvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~I 217 (517)
T PF12569_consen 141 GVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYI 217 (517)
T ss_pred CCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 6543 34444444444444444444444433220 0123332 3455667777888888888888
Q ss_pred HhC-CCCCCH-hhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004856 598 KDM-PFKPDA-RVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGL 671 (727)
Q Consensus 598 ~~~-~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 671 (727)
++. ...|+. ..|..-...+.+.|++++|...++.+.++++.|.-.-.-.+..+.+.|+.++|.+++......+.
T Consensus 218 d~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 218 DKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 866 556653 35555555688888888888888888888887777777777788888888888888877655543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.7e-07 Score=89.29 Aligned_cols=147 Identities=13% Similarity=0.141 Sum_probs=92.4
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH----hcC
Q 004856 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG----RAG 588 (727)
Q Consensus 513 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g 588 (727)
+...|++++|++++++- .+.......+..+.+.++++.|.+.++.|.+ +..|. +...|..++. -.+
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~-~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDS-ILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCH-HHHHHHHHHHHHHHTTT
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcH-HHHHHHHHHHHHHhCch
Confidence 34456677776665431 3445555666677777777777777777663 33332 2222333222 223
Q ss_pred CHHHHHHHHHhC--CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCCh-hHHHHHHHH
Q 004856 589 HMDEARELVKDM--PFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKW-NGVAKMRTF 665 (727)
Q Consensus 589 ~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~ 665 (727)
.+.+|..+|+++ ...+++.+.+.+..++...|++++|+.+++++++.+|.++.+...++-+....|+. +.+.+++.+
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 577777777777 23456666777777788888888888888888888888888888888888888887 556677777
Q ss_pred HHhC
Q 004856 666 LRDR 669 (727)
Q Consensus 666 m~~~ 669 (727)
++..
T Consensus 262 L~~~ 265 (290)
T PF04733_consen 262 LKQS 265 (290)
T ss_dssp CHHH
T ss_pred HHHh
Confidence 6654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.1e-05 Score=73.44 Aligned_cols=441 Identities=12% Similarity=0.038 Sum_probs=217.0
Q ss_pred HHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCCh
Q 004856 205 ISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASL 284 (727)
Q Consensus 205 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 284 (727)
+.-+..+.++..|..+++.-...+-.-...+-.-+..++-+.|++++|...+..+.... .++..++-.|...+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 44455667777777777665433211111111223333456677777777777666533 33444444444444445666
Q ss_pred HHHHHHHhcCCCCCeehHHHH-HHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHh
Q 004856 285 EDAKMLFDKMSDKDRVVWNIM-ISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN 363 (727)
Q Consensus 285 ~~A~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 363 (727)
.+|..+-.+.++ ....+.| ...-.+.++-++-..+-+.+.+. ...-.++....-....+++|.+++..++..
T Consensus 108 ~eA~~~~~ka~k--~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 108 IEAKSIAEKAPK--TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHHHHhhCCC--ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666666555432 2222222 22223334433333333333221 011111222222222345555555544433
Q ss_pred CCCCChhHHHH-HHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 004856 364 GSDYQVSVHNS-LIDMYCECEDLNCARKIFDSVK---TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTII 439 (727)
Q Consensus 364 g~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 439 (727)
. |+-...|. +.-+|.+..-++-+.++++--. ...++.-|.......+.=....|.+-.+++.+.+-+. |-
T Consensus 181 n--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~~ 254 (557)
T KOG3785|consen 181 N--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----YP 254 (557)
T ss_pred C--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----ch
Confidence 2 11111111 1123444444444433332211 1122333333332222211122222222322221100 10
Q ss_pred HHHHHHhc----CCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Q 004856 440 NILPACVN----IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK 515 (727)
Q Consensus 440 ~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~ 515 (727)
-.-..|.+ -.+-+.|.+++--+.+. .| ..--.|+-.|.+.+++.+|..+...+....|-......+ .++.
T Consensus 255 f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgv--v~aa 328 (557)
T KOG3785|consen 255 FIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGV--VFAA 328 (557)
T ss_pred hHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHH--HHHH
Confidence 00001111 11224444443332221 12 222345556899999999999999887333333322222 2333
Q ss_pred cC-------ChHHHHHHHHHHHHCCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 004856 516 HG-------DWSQCFKLYTQMKQSDVRPDLI-TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA 587 (727)
Q Consensus 516 ~g-------~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 587 (727)
.| ...-|.+.|.-.-+.+..-|.. ---++.+++.-..++++.+.+++.+..- +..|...--.+..+++..
T Consensus 329 lGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY--F~NdD~Fn~N~AQAk~at 406 (557)
T KOG3785|consen 329 LGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY--FTNDDDFNLNLAQAKLAT 406 (557)
T ss_pred hhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCcchhhhHHHHHHHHh
Confidence 33 2344555555444444443322 2334555666667889999999888753 333444444578999999
Q ss_pred CCHHHHHHHHHhCC-CC-CCHhhHHHHHHH-HHHcCCHHHHHHHHHHHHccC-CCCc-chHHHHHHHHHhcCChhHHHHH
Q 004856 588 GHMDEARELVKDMP-FK-PDARVWGPLLSA-CKMHSETELAELTAEKLISME-PENA-GNYVLLSNIYAAAGKWNGVAKM 662 (727)
Q Consensus 588 g~~~~A~~~~~~~~-~~-p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~~-p~~~-~~~~~l~~~~~~~g~~~~a~~~ 662 (727)
|++.+|+++|-..+ -+ .|..+|.+++.- |.+.+..+.|-.++ ++.+ |.+. .....+++.|.+.+.+--|.+.
T Consensus 407 gny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKA 483 (557)
T KOG3785|consen 407 GNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKA 483 (557)
T ss_pred cChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999998883 11 367788887776 66777877776554 4433 3222 3344667889999999888888
Q ss_pred HHHHHhCC
Q 004856 663 RTFLRDRG 670 (727)
Q Consensus 663 ~~~m~~~~ 670 (727)
|+.+....
T Consensus 484 Fd~lE~lD 491 (557)
T KOG3785|consen 484 FDELEILD 491 (557)
T ss_pred hhHHHccC
Confidence 88776554
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.5e-06 Score=76.35 Aligned_cols=167 Identities=14% Similarity=0.078 Sum_probs=98.3
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHH
Q 004856 470 SSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTA 547 (727)
Q Consensus 470 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~ 547 (727)
..++..+...|-+.|..+.|.+.|++.....| +....|....-+|..|++++|...|++....---| -..||..+.-+
T Consensus 69 ~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~C 148 (250)
T COG3063 69 YLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLC 148 (250)
T ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHH
Confidence 34444555556666666666666665333233 44556666666667777777777777666532222 24566666666
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHhhHHHHHHHHHHcCCHHH
Q 004856 548 CVNAGLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGHMDEARELVKDM--PFKPDARVWGPLLSACKMHSETEL 624 (727)
Q Consensus 548 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~ 624 (727)
..+.|+.+.|..+|++..+. .|+ ......+.+...+.|++..|..+++.. ...+...+....+..-...||.+.
T Consensus 149 al~~gq~~~A~~~l~raL~~---dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~ 225 (250)
T COG3063 149 ALKAGQFDQAEEYLKRALEL---DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAA 225 (250)
T ss_pred HhhcCCchhHHHHHHHHHHh---CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHH
Confidence 66777777777777766643 333 345566666666777777777776665 222444444444455566677666
Q ss_pred HHHHHHHHHccCCCC
Q 004856 625 AELTAEKLISMEPEN 639 (727)
Q Consensus 625 A~~~~~~~~~~~p~~ 639 (727)
+-+.-.++....|..
T Consensus 226 a~~Y~~qL~r~fP~s 240 (250)
T COG3063 226 AQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHHHHHHHhCCCc
Confidence 666666666666643
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.6e-07 Score=94.66 Aligned_cols=217 Identities=13% Similarity=0.121 Sum_probs=157.7
Q ss_pred cCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHH
Q 004856 447 NIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKL 525 (727)
Q Consensus 447 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~ 525 (727)
+.|++.+|.-.|+..++.. +-+...|.-|.......++-..|+..+.+..+..| |....-+|...|...|.-.+|++.
T Consensus 297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3444444444444444443 34555555565666666666667777766444444 667777888888888888888888
Q ss_pred HHHHHHCCCCCChHHHHHHH-----------HHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 004856 526 YTQMKQSDVRPDLITFLGLL-----------TACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAR 594 (727)
Q Consensus 526 ~~~m~~~g~~p~~~t~~~ll-----------~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 594 (727)
+++-+... |.. ..+. ..+.....+....++|-++....+..+|..++..|.-.|.-.|++++|.
T Consensus 376 L~~Wi~~~--p~y---~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 376 LDKWIRNK--PKY---VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHhC--ccc---hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 88776532 110 0000 1122223345556666666655466688889999999999999999999
Q ss_pred HHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 595 ELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 595 ~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
+.|+.+ ..+| |...||-|...++...+.++|+..|.+++++.|.-..+...|+-.|...|.++||.+.+=.....
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 999988 7778 56689999999999999999999999999999999999999999999999999999988765443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.6e-06 Score=87.09 Aligned_cols=249 Identities=12% Similarity=0.138 Sum_probs=156.1
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh---hHHHHHHHHHHhc----
Q 004856 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV---VSWSSMIKGYVTH---- 413 (727)
Q Consensus 341 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~---- 413 (727)
...+...|++++|.+.+..-.+. +.....+.......+.+.|+.++|..+|..+.++|+ .-|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccc
Confidence 34567889999999998764433 344456677888999999999999999999987644 3455555555222
Q ss_pred -CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHH
Q 004856 414 -DQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL-EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGE 491 (727)
Q Consensus 414 -g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 491 (727)
...+...++|+++...- |.......+.-.+.....+ ..+..+.....+.|+|+ +++.|-..|....+.+-...
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 25677888999887763 5544444443333332233 33455666677778654 45555555665555555555
Q ss_pred HHHhcc----------------CCCCCHHHHH--HHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcC
Q 004856 492 LFDEEK----------------IDSKDIITWN--SMISAYAKHGDWSQCFKLYTQMKQSDVRPD-LITFLGLLTACVNAG 552 (727)
Q Consensus 492 ~~~~~~----------------~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g 552 (727)
++.... ...|....|. -+...|...|++++|++.+++.++. .|+ ...|..-...+-+.|
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCC
Confidence 554421 0123343443 3355566777777777777777763 464 445666677777777
Q ss_pred CHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 004856 553 LVEEGRIIFKEMKESYGYEP-SQEHYASMVNLLGRAGHMDEARELVKDM 600 (727)
Q Consensus 553 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 600 (727)
++.+|.+.++..+. +++ |...-+-.+..+.|+|+.++|.+.+...
T Consensus 243 ~~~~Aa~~~~~Ar~---LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~F 288 (517)
T PF12569_consen 243 DLKEAAEAMDEARE---LDLADRYINSKCAKYLLRAGRIEEAEKTASLF 288 (517)
T ss_pred CHHHHHHHHHHHHh---CChhhHHHHHHHHHHHHHCCCHHHHHHHHHhh
Confidence 77777777777663 233 3334445556666777777777776655
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.4e-05 Score=73.94 Aligned_cols=415 Identities=11% Similarity=0.081 Sum_probs=207.3
Q ss_pred CCCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCCC--CeehHHH-
Q 004856 228 GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK--DRVVWNI- 304 (727)
Q Consensus 228 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~- 304 (727)
|+..-.--|.+++..+.+..++..+.+++..-.+.. +.+....+.|...|-...++..|-..++++... ...-|..
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY 83 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY 83 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH
Confidence 444444456666666666667777766666555443 224444555666666666777777777666542 2112211
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHh--hcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 004856 305 MISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSI--STMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCEC 382 (727)
Q Consensus 305 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 382 (727)
-...+-+.+.+.+|+.+...|.+. |+...-..-+.+. -+.+++..++.+.++.... .+..+.+.......+.
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKE 157 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---Cccchhccchheeecc
Confidence 123445566667777766666432 2221111111111 2344555555544433211 1233333333444556
Q ss_pred CCHHHHHHHHhcCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHhcCCChHHH
Q 004856 383 EDLNCARKIFDSVKTK----TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTI----INILPACVNIGALEHV 454 (727)
Q Consensus 383 g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~----~~ll~a~~~~~~~~~a 454 (727)
|+++.|.+-|+...+- ....||.-+. ..+.|+++.|++...++.++|++..+..= .-.+.+ ...|+.
T Consensus 158 gqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt--- 232 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNT--- 232 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccch---
Confidence 6666666666554432 2234443332 33455666666666666666554211100 000000 000000
Q ss_pred HHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004856 455 KYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID---SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ 531 (727)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 531 (727)
..++. ..-+..+|.-...+.+.|+++.|.+.+..|+.. ..|.++...+.-. -..+++.+..+-+.-+.+
T Consensus 233 ~~lh~-------Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~ 304 (459)
T KOG4340|consen 233 LVLHQ-------SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQ 304 (459)
T ss_pred HHHHH-------HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHh
Confidence 00000 001122333334467889999999999998743 3466666554322 234556666666666666
Q ss_pred CCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC-CCChhHHHHHHHHHHh-cCCHHHHHHHHHhCCCCCCHhh
Q 004856 532 SDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGY-EPSQEHYASMVNLLGR-AGHMDEARELVKDMPFKPDARV 608 (727)
Q Consensus 532 ~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~p~~~~ 608 (727)
. .| ...||..++-.||+..-++.|-.++.+-... .+ -.+...|+ |++++.. .-..++|.+-++.....-....
T Consensus 305 ~--nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kL 380 (459)
T KOG4340|consen 305 Q--NPFPPETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKL 380 (459)
T ss_pred c--CCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3 45 5679999999999998888888776542211 01 11233333 4444443 3467777766665421100011
Q ss_pred HHHHHHH-HHHcCCHHH----HHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 609 WGPLLSA-CKMHSETEL----AELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 609 ~~~ll~~-~~~~g~~~~----A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
-..-+.. -.++.+-++ ++.-++..+++- -.+....++.|+...++..+.+.|+.-.+.
T Consensus 381 RklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 381 RKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 1111111 122222222 233344443321 124446678899999999999999865443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.5e-05 Score=79.68 Aligned_cols=295 Identities=11% Similarity=0.003 Sum_probs=169.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC---CCChh---HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHH---H
Q 004856 372 HNSLIDMYCECEDLNCARKIFDSVK---TKTVV---SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFV-TIIN---I 441 (727)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~---l 441 (727)
+..+...+...|+.+.+.+.+.... ..+.. ........+...|++++|.+.+++..+. .|+.. .+.. .
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~ 86 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHH
Confidence 3444444555555555444443322 11211 1222233456678888888888887765 34332 3221 1
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCc-hHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCCh
Q 004856 442 LPACVNIGALEHVKYLHGYSMKLGLNS-LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDW 519 (727)
Q Consensus 442 l~a~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~ 519 (727)
.......+..+.+.+.+.. .....| .......+...+...|++++|...+++.....| +...+..+...|...|++
T Consensus 87 ~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence 1111223444444444433 112222 233444556678889999999999998554444 456777888888999999
Q ss_pred HHHHHHHHHHHHCCC-CCCh--HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHH-H--HHHHHHHhcCCHHHH
Q 004856 520 SQCFKLYTQMKQSDV-RPDL--ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHY-A--SMVNLLGRAGHMDEA 593 (727)
Q Consensus 520 ~~A~~~~~~m~~~g~-~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A 593 (727)
++|+..+++.....- .|+. ..|..+...+...|++++|..+++.........+..... + .+..-+...|....+
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 244 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG 244 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence 999999998876421 1232 245567788889999999999998876331111222111 1 233333444533333
Q ss_pred HHH---HHhC-CCCC-CHhhH--HHHHHHHHHcCCHHHHHHHHHHHHccCCC---------CcchHHHHHHHHHhcCChh
Q 004856 594 REL---VKDM-PFKP-DARVW--GPLLSACKMHSETELAELTAEKLISMEPE---------NAGNYVLLSNIYAAAGKWN 657 (727)
Q Consensus 594 ~~~---~~~~-~~~p-~~~~~--~~ll~~~~~~g~~~~A~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~ 657 (727)
.++ .... +..| ....+ .....++...|+.+.|...++.+....-. ........+.++...|+++
T Consensus 245 ~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~ 324 (355)
T cd05804 245 DRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYA 324 (355)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHH
Confidence 332 1111 1101 11222 24455578889999999999887663211 2344456677788999999
Q ss_pred HHHHHHHHHHhCC
Q 004856 658 GVAKMRTFLRDRG 670 (727)
Q Consensus 658 ~a~~~~~~m~~~~ 670 (727)
+|.+.+......+
T Consensus 325 ~A~~~L~~al~~a 337 (355)
T cd05804 325 TALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998876653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.65 E-value=3e-08 Score=61.16 Aligned_cols=34 Identities=21% Similarity=0.492 Sum_probs=28.9
Q ss_pred hcCCCchhhHHHHHHHHHccCChhHHHHHHhcCC
Q 004856 59 HGLHQNLILSSNLIDSYANLGLLSLSQQVFNSIT 92 (727)
Q Consensus 59 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 92 (727)
.|+.||.++||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3788888888888888888888888888888884
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.9e-05 Score=78.21 Aligned_cols=89 Identities=17% Similarity=0.122 Sum_probs=73.6
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhH
Q 004856 581 VNLLGRAGHMDEARELVKDM-PFKPD-ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNG 658 (727)
Q Consensus 581 i~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 658 (727)
...+.+.|++..|+..+.++ ...|+ ...|.....+|.+.|++..|..-.+..++++|+....|..-+-++....+|+.
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydk 444 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDK 444 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999888 45564 45666666668899999999999999999999888899988888999999999
Q ss_pred HHHHHHHHHhC
Q 004856 659 VAKMRTFLRDR 669 (727)
Q Consensus 659 a~~~~~~m~~~ 669 (727)
|.+.+++..+.
T Consensus 445 Aleay~eale~ 455 (539)
T KOG0548|consen 445 ALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHHhc
Confidence 99998877665
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.2e-06 Score=83.84 Aligned_cols=154 Identities=19% Similarity=0.198 Sum_probs=91.0
Q ss_pred HHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh----cCC
Q 004856 478 ISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN----AGL 553 (727)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~ 553 (727)
.+|...|++++|.+++..- .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++.. .+.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG----GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHcCCHHHHHHHHHcc----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchh
Confidence 3455566777666666542 24455555667777777777777777777762 333 333344444332 235
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCH-HHHHHHHH
Q 004856 554 VEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSET-ELAELTAE 630 (727)
Q Consensus 554 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~-~~A~~~~~ 630 (727)
+.+|..+|+++.++ ..+++.+.+.+..++...|++++|.+++.+. ...| ++.+.-.++......|+. +.+.+...
T Consensus 183 ~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 77777777777653 4566677777777777777777777777765 3334 333444555555566655 56667777
Q ss_pred HHHccCCCCc
Q 004856 631 KLISMEPENA 640 (727)
Q Consensus 631 ~~~~~~p~~~ 640 (727)
++....|+++
T Consensus 261 qL~~~~p~h~ 270 (290)
T PF04733_consen 261 QLKQSNPNHP 270 (290)
T ss_dssp HCHHHTTTSH
T ss_pred HHHHhCCCCh
Confidence 7777777544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.00016 Score=72.97 Aligned_cols=433 Identities=12% Similarity=0.028 Sum_probs=245.0
Q ss_pred HHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCC-hhHHhHHHHHhhcCCCh
Q 004856 206 SLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKD-LSVNTALLSMYSKLASL 284 (727)
Q Consensus 206 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~ 284 (727)
.+.+..|+++.|+.+|.+..... ++|.+-|..-..+++..|++++|.+=-...++.. |+ ..-|+....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~--p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN--PDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC--CchhhHHHHhHHHHHhcccH
Confidence 45667899999999998887754 3477778888888888898888877666655543 43 45677777777778888
Q ss_pred HHHHHHHhcCCCC---CeehHHHHHHHHHhcCCchHH-HHHHHHH-HHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHH
Q 004856 285 EDAKMLFDKMSDK---DRVVWNIMISAYYQSGFPKES-LELLMCM-VRSGFRADLFTAIAAVSSISTMKNIEWGKQMHAN 359 (727)
Q Consensus 285 ~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A-~~~~~~m-~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 359 (727)
++|+.-|.+-.+. |...++-+..++ ..+.+ .+.|..- .-.++.-+..|- .......+..-.+.+..
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~----~~~~~~~~~~~~p~~~~~l~~~p~t~-----~~~~~~~~~~~l~~~~~ 157 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAY----LEDYAADQLFTKPYFHEKLANLPLTN-----YSLSDPAYVKILEIIQK 157 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhh----hHHHHhhhhccCcHHHHHhhcChhhh-----hhhccHHHHHHHHHhhc
Confidence 8888888876553 444555565555 11111 1111100 000111122111 11111111111111110
Q ss_pred HHH-hCCCC-ChhHHHHHHHHHHhcCCH-HHHHHH--H-------hcCCCC-----C----------hhHHHHHHHHHHh
Q 004856 360 VLR-NGSDY-QVSVHNSLIDMYCECEDL-NCARKI--F-------DSVKTK-----T----------VVSWSSMIKGYVT 412 (727)
Q Consensus 360 ~~~-~g~~~-~~~~~~~li~~~~~~g~~-~~A~~~--~-------~~~~~~-----~----------~~~~~~li~~~~~ 412 (727)
-.. .+... |..+..++.... ..+.. ..+... . ..+..+ | ..-...+.++..+
T Consensus 158 ~p~~l~~~l~d~r~m~a~~~l~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaayk 236 (539)
T KOG0548|consen 158 NPTSLKLYLNDPRLMKADGQLK-GVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYK 236 (539)
T ss_pred CcHhhhcccccHHHHHHHHHHh-cCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHH
Confidence 000 00000 111111111100 00000 000000 0 000000 0 0124456777777
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCc------hHhHHHHHHHHHHhcCCH
Q 004856 413 HDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS------LSSVNTAIFISYAKCGCI 486 (727)
Q Consensus 413 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~ 486 (727)
..+++.|++-+....+.. -+..-++..-.++...|.............+.|-.. -......+..+|.+.+++
T Consensus 237 kk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~ 314 (539)
T KOG0548|consen 237 KKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDY 314 (539)
T ss_pred hhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhH
Confidence 888888888888887753 333334555556777777766666655555444221 111222234477778888
Q ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHhH
Q 004856 487 EMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI-TFLGLLTACVNAGLVEEGRIIFKEMK 565 (727)
Q Consensus 487 ~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~ 565 (727)
+.|...|.+......+.. ...+....++++...+...- +.|... -...-...+.+.|++..|...|.+++
T Consensus 315 ~~ai~~~~kaLte~Rt~~-------~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAI 385 (539)
T KOG0548|consen 315 EGAIKYYQKALTEHRTPD-------LLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAI 385 (539)
T ss_pred HHHHHHHHHHhhhhcCHH-------HHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 889888887432122211 12233445566665555544 445432 22233677888999999999999998
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHh-hHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchH
Q 004856 566 ESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPDAR-VWGPLLSACKMHSETELAELTAEKLISMEPENAGNY 643 (727)
Q Consensus 566 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 643 (727)
.+ .+-|...|..-.-+|.+.|.+..|++-.+.. ...|+.. .|.--..++....+++.|...|++.++.+|.+....
T Consensus 386 kr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~ 463 (539)
T KOG0548|consen 386 KR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAI 463 (539)
T ss_pred hc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHH
Confidence 75 2445778999999999999999998877666 4555543 444444456677799999999999999999888887
Q ss_pred HHHHHHHHhcCChhHHHHHHH
Q 004856 644 VLLSNIYAAAGKWNGVAKMRT 664 (727)
Q Consensus 644 ~~l~~~~~~~g~~~~a~~~~~ 664 (727)
..+.+++......+...++.+
T Consensus 464 ~~~~rc~~a~~~~~~~ee~~~ 484 (539)
T KOG0548|consen 464 DGYRRCVEAQRGDETPEETKR 484 (539)
T ss_pred HHHHHHHHHhhcCCCHHHHHH
Confidence 777777665433333344433
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.8e-05 Score=83.56 Aligned_cols=380 Identities=14% Similarity=0.036 Sum_probs=223.0
Q ss_pred hhHHhHHHHHhhcCCChHHHHHHHhcCCCC---CeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCh--hhHHHHHH
Q 004856 268 LSVNTALLSMYSKLASLEDAKMLFDKMSDK---DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADL--FTAIAAVS 342 (727)
Q Consensus 268 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~ 342 (727)
...|..|...|+...+...|.+.|++.-+- |..++......|++..+++.|..+.-..-+.. +.-. ..|..+--
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQRGP 570 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhccc
Confidence 456888888888888889999999987653 67788889999999999999998833222111 1111 11222223
Q ss_pred HhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHH---HHHHHHhcCChHHH
Q 004856 343 SISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSS---MIKGYVTHDQSLEA 419 (727)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A 419 (727)
.+...++...+..-|+...+.. +.|...|..|..+|.++|++..|.++|.+...-++.+|-. ....-+..|++.+|
T Consensus 571 yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHH
Confidence 3445666777776666666554 4567788899999999999999999998776655543322 12234567888888
Q ss_pred HHHHHHHHHC------CCCCCHHHHHHHHHHHhcCCChHHHHHHHHHH-------HHhCCCchHhHHHHHHHHHHhcCCH
Q 004856 420 LRLFSEMKLE------GVEVDFVTIINILPACVNIGALEHVKYLHGYS-------MKLGLNSLSSVNTAIFISYAKCGCI 486 (727)
Q Consensus 420 ~~~~~~m~~~------g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~li~~~~~~g~~ 486 (727)
+..+...... +..--..++......+...|-..++..+++.. .......+...+-.+
T Consensus 650 ld~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a---------- 719 (1238)
T KOG1127|consen 650 LDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA---------- 719 (1238)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH----------
Confidence 8888776542 11111223333333333333333333333222 222211122222111
Q ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCh---H---HHHHHHHHHHHCCCCCChHHHHHHHHHHHh----c----C
Q 004856 487 EMAGELFDEEKIDSKDIITWNSMISAYAKHGDW---S---QCFKLYTQMKQSDVRPDLITFLGLLTACVN----A----G 552 (727)
Q Consensus 487 ~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~---~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~----g 552 (727)
.+|..+|-......|+......+..-+-..+.. + -+.+.+-.-.. +..+..+|..|+..|.+ . .
T Consensus 720 sdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~ 797 (1238)
T KOG1127|consen 720 SDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMK 797 (1238)
T ss_pred hHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcch
Confidence 233344443331122222222222212222222 1 11111111111 12234455555444333 1 2
Q ss_pred CHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHH
Q 004856 553 LVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTA 629 (727)
Q Consensus 553 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~ 629 (727)
+...|...+....+. ..+ ...|+.|.- +.-.|++.-|.-.|-+. ...| ...+|..+...|.+..|++-|...+
T Consensus 798 ~~~~Ai~c~KkaV~L---~ann~~~WnaLGV-lsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af 873 (1238)
T KOG1127|consen 798 DACTAIRCCKKAVSL---CANNEGLWNALGV-LSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAF 873 (1238)
T ss_pred hHHHHHHHHHHHHHH---hhccHHHHHHHHH-hhccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHH
Confidence 234677777777643 344 445555544 46668888888887766 2334 5568888888899999999999999
Q ss_pred HHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 004856 630 EKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTF 665 (727)
Q Consensus 630 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 665 (727)
.++..++|.|...+.-.+.+....|+.-++..+|..
T Consensus 874 ~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 874 SSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred HhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 999999999999999888888888988888888876
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.2e-06 Score=80.04 Aligned_cols=182 Identities=12% Similarity=-0.012 Sum_probs=119.0
Q ss_pred chHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChH----
Q 004856 468 SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI----ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI---- 539 (727)
Q Consensus 468 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---- 539 (727)
.....+..+...+.+.|++++|...|+++....|+. ..|..+..++...|++++|+..++++.+. .|+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHH
Confidence 344556666667777888888888887754434432 35666777777888888888888888763 34321
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHH
Q 004856 540 TFLGLLTACVNA--------GLVEEGRIIFKEMKESYGYEPSQ-EHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWG 610 (727)
Q Consensus 540 t~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 610 (727)
++..+..++... |+.++|.+.++.+... .|+. ..+..+.... ...... . ....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~----~~~~~~---~--------~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMD----YLRNRL---A--------GKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHH----HHHHHH---H--------HHHH
Confidence 345555555544 6677777777777754 3332 2222221110 000000 0 0112
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCC---cchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 611 PLLSACKMHSETELAELTAEKLISMEPEN---AGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 611 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
.+...+...|++++|+..++++++..|++ +.++..++.++.+.|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34455889999999999999999987754 468889999999999999999999888765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.00037 Score=66.21 Aligned_cols=315 Identities=13% Similarity=0.049 Sum_probs=180.7
Q ss_pred ehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHH---HHhhcCCChHHHHHHHHHHHHhCCCCChhH-HHHH
Q 004856 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAV---SSISTMKNIEWGKQMHANVLRNGSDYQVSV-HNSL 375 (727)
Q Consensus 300 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll---~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~l 375 (727)
.-.--+...+...|++..|+..|....+. |...|.++. ..|...|....|..=+..+++. +||-.. ..--
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 33445667777888888888888877643 444444444 3455667666666666666554 444321 1112
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHH
Q 004856 376 IDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK 455 (727)
Q Consensus 376 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 455 (727)
...+.+.|.+++|..=|+.+.+.++.- +....++.+.-..++-. .....+..+...|+...+.
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~~ai 175 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQNAI 175 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchhhHH
Confidence 234567777777777777665433210 00000000000001111 1112223334455555565
Q ss_pred HHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 004856 456 YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID-SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDV 534 (727)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 534 (727)
.....+++.. +.+...+..-..+|...|++..|..-+...... .-+...+--+-..+...|+.+.++...++.++ +
T Consensus 176 ~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--l 252 (504)
T KOG0624|consen 176 EMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--L 252 (504)
T ss_pred HHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--c
Confidence 5555555543 456666666666677777777776666554322 23444555555666667777777777777666 4
Q ss_pred CCChHH----HHHH---------HHHHHhcCCHHHHHHHHHHhHHhcCCCCCh-----hHHHHHHHHHHhcCCHHHHHHH
Q 004856 535 RPDLIT----FLGL---------LTACVNAGLVEEGRIIFKEMKESYGYEPSQ-----EHYASMVNLLGRAGHMDEAREL 596 (727)
Q Consensus 535 ~p~~~t----~~~l---------l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~ 596 (727)
.||... |..| +......++|.++++..+...+. .|.. ..+..+-.++...|++.+|++.
T Consensus 253 dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqq 329 (504)
T KOG0624|consen 253 DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQ 329 (504)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHH
Confidence 566432 1111 11233456777777777766643 4441 2233445566677888999888
Q ss_pred HHhC-CCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchH
Q 004856 597 VKDM-PFKPD-ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNY 643 (727)
Q Consensus 597 ~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 643 (727)
..+. .+.|| ..++.--..+|.-..+++.|+.-|+++.+.++++..+-
T Consensus 330 C~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~r 378 (504)
T KOG0624|consen 330 CKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAR 378 (504)
T ss_pred HHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHH
Confidence 8776 66776 55666667778888889999999999999888765443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.00015 Score=85.39 Aligned_cols=324 Identities=10% Similarity=-0.006 Sum_probs=177.8
Q ss_pred cCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC----CCC---h-----hHHHHHHHHHHhc
Q 004856 346 TMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK----TKT---V-----VSWSSMIKGYVTH 413 (727)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~---~-----~~~~~li~~~~~~ 413 (727)
..|+++.....+..+.......+..........+...|++++|...+.... ..+ . .....+...+...
T Consensus 386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 465 (903)
T PRK04841 386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND 465 (903)
T ss_pred hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC
Confidence 445555555554443111111122222333444556677777776665432 111 1 1112223445567
Q ss_pred CChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhcCCChHHHHHHHHHHHHh----CCC-chHhHHHHHHHHHHhcC
Q 004856 414 DQSLEALRLFSEMKLEGVEVDF----VTIINILPACVNIGALEHVKYLHGYSMKL----GLN-SLSSVNTAIFISYAKCG 484 (727)
Q Consensus 414 g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g 484 (727)
|++++|...+++....-...+. .....+...+...|+++.|...+...... |-. ........+...+...|
T Consensus 466 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G 545 (903)
T PRK04841 466 GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG 545 (903)
T ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC
Confidence 8888888888776653111121 22334444566778888887777666542 111 11234445566677788
Q ss_pred CHHHHHHHHHhccCC-----C---C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC--CCCC--hHHHHHHHHHHHhc
Q 004856 485 CIEMAGELFDEEKID-----S---K-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSD--VRPD--LITFLGLLTACVNA 551 (727)
Q Consensus 485 ~~~~A~~~~~~~~~~-----~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~--~~t~~~ll~~~~~~ 551 (727)
++++|...+++.... . + ....+..+...+...|++++|...+.+..... ..+. ...+..+.......
T Consensus 546 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 625 (903)
T PRK04841 546 FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLAR 625 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHc
Confidence 888888877652110 1 1 12234445556667788888888887765421 1121 23444456667778
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChhHH-----HHHHHHHHhcCCHHHHHHHHHhCCCC--CCHh----hHHHHHHHHHHcC
Q 004856 552 GLVEEGRIIFKEMKESYGYEPSQEHY-----ASMVNLLGRAGHMDEARELVKDMPFK--PDAR----VWGPLLSACKMHS 620 (727)
Q Consensus 552 g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~--p~~~----~~~~ll~~~~~~g 620 (727)
|+.++|...++..............+ ...+..+...|+.+.|.+++...... .... .+..+..++...|
T Consensus 626 G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 705 (903)
T PRK04841 626 GDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLG 705 (903)
T ss_pred CCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcC
Confidence 88888888887765421111110111 11123345578888888887765211 1111 1234444577788
Q ss_pred CHHHHHHHHHHHHccCC------CCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 621 ETELAELTAEKLISMEP------ENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 621 ~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
+.++|...++++.+... ....++..++.++...|+.++|...+.+..+.
T Consensus 706 ~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 706 QFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888876421 12235667777888888888888888877654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00017 Score=74.58 Aligned_cols=269 Identities=9% Similarity=0.010 Sum_probs=172.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHH-HHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHH---
Q 004856 400 VVSWSSMIKGYVTHDQSLEALRLFSEMKLEG-VEVDFVTIIN-ILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNT--- 474 (727)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~-ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--- 474 (727)
...|..+...+...|+.+++...+.+..... ..++...... ....+...|+++++..+++...+.. +.+...+.
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 3456667777777888888777777665432 1233322222 2234567899999999999888764 33444443
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 004856 475 AIFISYAKCGCIEMAGELFDEEKIDSKD-IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL 553 (727)
Q Consensus 475 ~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 553 (727)
.........|..+.+.+.+.......|+ ...+..+...+...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 2222223356667777777653332343 3445566678889999999999999999853 3356778888999999999
Q ss_pred HHHHHHHHHHhHHhcCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhhHH------HHHHHHHHcCCHHH
Q 004856 554 VEEGRIIFKEMKESYGYEPSQ--EHYASMVNLLGRAGHMDEARELVKDM-PFKPDARVWG------PLLSACKMHSETEL 624 (727)
Q Consensus 554 ~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~------~ll~~~~~~g~~~~ 624 (727)
+++|..++++........|+. ..|..+...+...|++++|..++++. ...|....+. .++.-+...|..+.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 999999999988642222332 34667889999999999999999987 2233111111 22233445554443
Q ss_pred HHHH---HHHHHccCCCCc--chHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004856 625 AELT---AEKLISMEPENA--GNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 625 A~~~---~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 670 (727)
+.+. ........|... ..-...+.++...|++++|.+.++.+....
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3333 222111112211 222366778899999999999999887653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.3e-05 Score=72.60 Aligned_cols=180 Identities=13% Similarity=0.100 Sum_probs=111.8
Q ss_pred hcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 004856 482 KCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIF 561 (727)
Q Consensus 482 ~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 561 (727)
..+++..+..+.++.++ +.+..+.+.......+.|+++.|++-|+...+-+---....|+..+.- .+.|+++.|+++.
T Consensus 124 se~Dl~g~rsLveQlp~-en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~i 201 (459)
T KOG4340|consen 124 SEGDLPGSRSLVEQLPS-ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHI 201 (459)
T ss_pred ccccCcchHHHHHhccC-CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHH
Confidence 34566666666666553 233333333444445667777777777766653322234455544433 3446777777777
Q ss_pred HHhHHhcCCC-------------CCh--------hHHHHHHH-------HHHhcCCHHHHHHHHHhCC----CCCCHhhH
Q 004856 562 KEMKESYGYE-------------PSQ--------EHYASMVN-------LLGRAGHMDEARELVKDMP----FKPDARVW 609 (727)
Q Consensus 562 ~~~~~~~~~~-------------p~~--------~~~~~li~-------~~~~~g~~~~A~~~~~~~~----~~p~~~~~ 609 (727)
.++.++ |++ ||+ -+-+.++. .+.+.|+++.|.+.+..|+ ..-|++|.
T Consensus 202 SEIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTL 280 (459)
T KOG4340|consen 202 SEIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTL 280 (459)
T ss_pred HHHHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhh
Confidence 776665 442 111 11223333 3567899999999999994 33466665
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 004856 610 GPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTF 665 (727)
Q Consensus 610 ~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 665 (727)
..+.- --..++.....+-+.-+++++|-.+.++..+..+|++..-++-|..++-+
T Consensus 281 HN~Al-~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 281 HNQAL-MNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hHHHH-hcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 54432 22445566666777778888987789999999999999999888887653
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.4e-06 Score=74.43 Aligned_cols=123 Identities=15% Similarity=0.006 Sum_probs=89.1
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 004856 524 KLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PF 602 (727)
Q Consensus 524 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 602 (727)
.++++..+ +.|+. +..+..++...|++++|...|+.+... -+.+...|..+..++.+.|++++|...|++. ..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 44555555 34553 445667777888888888888887743 2334667778888888888888888888877 44
Q ss_pred CC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHh
Q 004856 603 KP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAA 652 (727)
Q Consensus 603 ~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 652 (727)
.| +...|..+..++...|+.++|+..+++++++.|+++..+...+.+...
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 55 455677777778888888888888888888888888888777665543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00034 Score=82.29 Aligned_cols=363 Identities=9% Similarity=-0.029 Sum_probs=218.6
Q ss_pred HHHhhcCCChHHHHHHHhcCCCCCeeh--HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHH
Q 004856 275 LSMYSKLASLEDAKMLFDKMSDKDRVV--WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEW 352 (727)
Q Consensus 275 i~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 352 (727)
...|...|++.+|..........+... ...........|++..+...+..+.......+..........+...+++++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 334555666666666555554432111 111223344567777766666655221111122222333444557788999
Q ss_pred HHHHHHHHHHhCC------CCC--hhHHHHHHHHHHhcCCHHHHHHHHhcCCC----CCh----hHHHHHHHHHHhcCCh
Q 004856 353 GKQMHANVLRNGS------DYQ--VSVHNSLIDMYCECEDLNCARKIFDSVKT----KTV----VSWSSMIKGYVTHDQS 416 (727)
Q Consensus 353 a~~~~~~~~~~g~------~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~li~~~~~~g~~ 416 (727)
+...+....+.-- .+. ......+...+...|++++|...++.... .+. ..++.+...+...|++
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~ 507 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL 507 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence 9888887755311 111 11222334456678999999988876432 222 3455666777889999
Q ss_pred HHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHhcCCChHHHHHHHHHHHHh----CCC--c-hHhHHHHHHHHHHhcC
Q 004856 417 LEALRLFSEMKLEGV---EV--DFVTIINILPACVNIGALEHVKYLHGYSMKL----GLN--S-LSSVNTAIFISYAKCG 484 (727)
Q Consensus 417 ~~A~~~~~~m~~~g~---~p--~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g 484 (727)
++|...+.+.....- .+ ...++..+...+...|+++.|...+...... +.. + ....+..+...+...|
T Consensus 508 ~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G 587 (903)
T PRK04841 508 ARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA 587 (903)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc
Confidence 999999988764211 11 1234455566788899999999988776552 221 1 2334455666777889
Q ss_pred CHHHHHHHHHhccCC----CC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CChHHH-----HHHHHHHHhcC
Q 004856 485 CIEMAGELFDEEKID----SK--DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVR-PDLITF-----LGLLTACVNAG 552 (727)
Q Consensus 485 ~~~~A~~~~~~~~~~----~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~-----~~ll~~~~~~g 552 (727)
++++|...+.+.... .+ ....+..+...+...|++++|.+.+.+.....-. .....+ ...+..+...|
T Consensus 588 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 667 (903)
T PRK04841 588 RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG 667 (903)
T ss_pred CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC
Confidence 999999998874211 12 1334455666788999999999999887542101 111111 11224445578
Q ss_pred CHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCH-hhHHHHHHHHHHcCC
Q 004856 553 LVEEGRIIFKEMKESYGYEPS---QEHYASMVNLLGRAGHMDEARELVKDM-------PFKPDA-RVWGPLLSACKMHSE 621 (727)
Q Consensus 553 ~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~-~~~~~ll~~~~~~g~ 621 (727)
+.+.|...+...... ..... ...+..+..++...|+.++|...+++. +..++. .+...+..++...|+
T Consensus 668 ~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~ 746 (903)
T PRK04841 668 DKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGR 746 (903)
T ss_pred CHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCC
Confidence 999999887765432 11111 111346777888999999999998876 222222 234444455899999
Q ss_pred HHHHHHHHHHHHccCCC
Q 004856 622 TELAELTAEKLISMEPE 638 (727)
Q Consensus 622 ~~~A~~~~~~~~~~~p~ 638 (727)
.++|...+.+++++...
T Consensus 747 ~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 747 KSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHHHHHhCc
Confidence 99999999999987643
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.1e-05 Score=89.36 Aligned_cols=202 Identities=15% Similarity=0.134 Sum_probs=154.5
Q ss_pred CchHhHHHHHHHHHHhcCCHHHHHHHHHhccC-CC-----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHH
Q 004856 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKI-DS-----KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLIT 540 (727)
Q Consensus 467 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 540 (727)
+.....|-..|......+++++|++++++... .. --...|.++++.-...|.-+...++|+++.+. .-....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 44455666667777788888888888887332 11 12457888888877888888888888888773 223455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HhhHHHHHHHH
Q 004856 541 FLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPD---ARVWGPLLSAC 616 (727)
Q Consensus 541 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~ 616 (727)
|..|...|.+.+..++|.++++.|.++++ -...+|..+++.+.+..+-+.|..++.++ ..-|. .....-....-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 78888888888999999999999988755 56678888888888888888888888876 33343 33444555556
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 004856 617 KMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLK 672 (727)
Q Consensus 617 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 672 (727)
.++|+.+.+..+|+..+.-.|.....|..++++-.+.|+.+.++.+|+++...++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 78889999999999988888888888999999988999999999999988887663
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.52 E-value=5e-05 Score=75.39 Aligned_cols=170 Identities=11% Similarity=0.081 Sum_probs=118.3
Q ss_pred HHhcC-CHHHHHHHHHhccCCC-CCHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCH
Q 004856 480 YAKCG-CIEMAGELFDEEKIDS-KDIITWNSMISAYAKHGDW--SQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLV 554 (727)
Q Consensus 480 ~~~~g-~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~ 554 (727)
+.+.| ++++++..++++.... .+..+|+.....+.+.|+. ++++.+++++.+. .| |..+|.....++...|++
T Consensus 81 L~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~ 158 (320)
T PLN02789 81 LEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGW 158 (320)
T ss_pred HHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhH
Confidence 33444 4567777776644333 3556777665555566653 6778888888874 45 677888888888888999
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc---CC----HHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHc----CC
Q 004856 555 EEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA---GH----MDEARELVKDM-PFKP-DARVWGPLLSACKMH----SE 621 (727)
Q Consensus 555 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~----~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~----g~ 621 (727)
+++++.++++.+. . .-|...|+.....+.+. |. .+++.++..++ ...| |...|+-+.+.+... ++
T Consensus 159 ~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~ 236 (320)
T PLN02789 159 EDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVS 236 (320)
T ss_pred HHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccccc
Confidence 9999999988865 2 33455666655555443 22 24566666444 5566 556888888887763 34
Q ss_pred HHHHHHHHHHHHccCCCCcchHHHHHHHHHhc
Q 004856 622 TELAELTAEKLISMEPENAGNYVLLSNIYAAA 653 (727)
Q Consensus 622 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 653 (727)
..+|...+.++.+.+|.++.+...|+++|...
T Consensus 237 ~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 237 DPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred chhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 56788999999888999999999999999864
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.1e-05 Score=74.39 Aligned_cols=118 Identities=10% Similarity=0.114 Sum_probs=79.9
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHH-HHHcCC--HHHH
Q 004856 551 AGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSA-CKMHSE--TELA 625 (727)
Q Consensus 551 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~-~~~~g~--~~~A 625 (727)
.++.+++...++...+. -+.+...|..|...|...|++++|...+++. ...| +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 45556666666665543 2445667777777777777777777777776 4455 33455555554 355565 4778
Q ss_pred HHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004856 626 ELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 626 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 670 (727)
.++++++++.+|++..++..++..+...|++++|+..|+++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 888888888888777788888888888888888888887776653
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2e-05 Score=72.27 Aligned_cols=154 Identities=13% Similarity=0.113 Sum_probs=90.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 004856 507 NSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR 586 (727)
Q Consensus 507 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 586 (727)
..+-..+...|+-+....+..+..... +-|......++......|++.+|...+++... .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 334455555666666655555543311 11333344456666666666666666666654 345556666666666666
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHH
Q 004856 587 AGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMR 663 (727)
Q Consensus 587 ~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 663 (727)
.|++++|..-|.+. .+.| ++...+.+...+.-.|+.+.|+.++..+....+.|..+-..|..+....|++++|..+.
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 66666666666655 3333 33455555555666666666666666666666656666666666666666666666554
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.3e-07 Score=57.27 Aligned_cols=33 Identities=36% Similarity=0.634 Sum_probs=25.9
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 004856 364 GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK 396 (727)
Q Consensus 364 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 396 (727)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777778888888888888888888887774
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.6e-05 Score=87.01 Aligned_cols=140 Identities=11% Similarity=0.040 Sum_probs=106.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHH
Q 004856 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD-LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS-QEHYAS 579 (727)
Q Consensus 502 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 579 (727)
++..+-.|.....+.|++++|+.+++...+ +.|+ ......+..++.+.+++++|...+++.... .|+ ......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHHHHH
Confidence 467777788888888888888888888888 5675 456777788888888888888888888753 454 556777
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHH
Q 004856 580 MVNLLGRAGHMDEARELVKDM-PFKPD-ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLL 646 (727)
Q Consensus 580 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 646 (727)
+..++.+.|++++|..+|++. ...|+ ...|..+..++...|+.++|...|+++++...+-...|..+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence 788888888888888888887 23443 56777777888888888888888888888765444454433
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.4e-06 Score=72.86 Aligned_cols=107 Identities=11% Similarity=-0.045 Sum_probs=91.3
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 004856 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISME 636 (727)
Q Consensus 559 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 636 (727)
.++++..+ +.|+ .+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|+..|+++++++
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 44555553 3455 3556788899999999999999988 5566 56678888888999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004856 637 PENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 637 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 670 (727)
|+++.++..++.++...|+.++|+..++...+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999887653
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.7e-05 Score=76.32 Aligned_cols=215 Identities=13% Similarity=0.134 Sum_probs=131.9
Q ss_pred cCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhcCChHHHHHH
Q 004856 346 TMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK---TVVSWSSMIKGYVTHDQSLEALRL 422 (727)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~ 422 (727)
+.|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+.+..+- |....-+|.-.|...|.-.+|+..
T Consensus 297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3445555555555555443 334455666666666666666666666655443 445555666677777777777777
Q ss_pred HHHHHHCCCC--------CCHHHHHHHHHHHhcCCChHHHHHH-HHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHH
Q 004856 423 FSEMKLEGVE--------VDFVTIINILPACVNIGALEHVKYL-HGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELF 493 (727)
Q Consensus 423 ~~~m~~~g~~--------p~~~t~~~ll~a~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 493 (727)
|+.-+....+ ++...-.. ........+....++ ++.....+..+|+.++..|.-.|--.|++++|...|
T Consensus 376 L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 376 LDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 7776543210 00000000 011111122333333 444445565577777788877788888888888888
Q ss_pred HhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 004856 494 DEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL-ITFLGLLTACVNAGLVEEGRIIFKEMK 565 (727)
Q Consensus 494 ~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~ 565 (727)
+.....+| |...||.|...++...+.++|+..|++.++ ++|+- .....|.-+|...|.+++|.+.|-.+.
T Consensus 454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 87554455 667888888888888888888888888887 67863 345556667888888888887776554
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.6e-05 Score=82.87 Aligned_cols=214 Identities=10% Similarity=0.044 Sum_probs=149.1
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCh
Q 004856 440 NILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDW 519 (727)
Q Consensus 440 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 519 (727)
.+...+...|-...|..++.... .+...+..|...|+..+|..+..+..+.+||...|..+.+......-+
T Consensus 403 ~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~y 473 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLY 473 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHH
Confidence 34445556666666666665442 344566677777777777777766444466777777777666666666
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 004856 520 SQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKD 599 (727)
Q Consensus 520 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 599 (727)
++|.++++..-.. .-..+.......++++++.+.|+.-.+. -+....+|-.+.-+..+.+++..|.+.|..
T Consensus 474 EkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 474 EKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 7777776654332 1111111122357777777777766543 122356777777788888999999998887
Q ss_pred C-CCCCCH-hhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004856 600 M-PFKPDA-RVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGL 671 (727)
Q Consensus 600 ~-~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 671 (727)
. ...||. ..||.+-.+|.+.++..+|...++++++-+-++...+.+..-+..+.|.|++|.+.+.++.+...
T Consensus 545 cvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 545 CVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred HhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 7 667765 58999999999999999999999999998877778888888888999999999999998876543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00012 Score=81.55 Aligned_cols=233 Identities=12% Similarity=0.147 Sum_probs=169.6
Q ss_pred CC-HHHHHHHHHHHhcCCChHHHHHHHHHHHHh-CCC---chHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHH
Q 004856 433 VD-FVTIINILPACVNIGALEHVKYLHGYSMKL-GLN---SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWN 507 (727)
Q Consensus 433 p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 507 (727)
|| ...|...|.-..+.++.++|+++.+++.+. ++. --..+|.+++++-.--|.-+...++|++.....-....|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 44 456667777777888888888887776652 221 2234677777777777888888999998775333356788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHH
Q 004856 508 SMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP--SQEHYASMVNLLG 585 (727)
Q Consensus 508 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~ 585 (727)
.|...|.+.+.+++|-++++.|.++ +.-....|...+..+.+..+-+.|..++.++.+. ++. -.......+.+-.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHh
Confidence 8999999999999999999999876 4556678888999999998889999999988853 322 2445556667778
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccC--CCCcchHH-HHHHHHHhcCChhHHH
Q 004856 586 RAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISME--PENAGNYV-LLSNIYAAAGKWNGVA 660 (727)
Q Consensus 586 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~-~l~~~~~~~g~~~~a~ 660 (727)
+.|+.+.+..+|+.. .-.| ....|+.++..-.++|+.+.+..+|++++.+. |.....+. ..+..-.+.|+-+.+.
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 899999999999887 2233 45689999999999999999999999999854 44444333 4444444446665555
Q ss_pred HHHHHHHh
Q 004856 661 KMRTFLRD 668 (727)
Q Consensus 661 ~~~~~m~~ 668 (727)
.+-.+..+
T Consensus 1692 ~VKarA~E 1699 (1710)
T KOG1070|consen 1692 YVKARAKE 1699 (1710)
T ss_pred HHHHHHHH
Confidence 55444433
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.35 E-value=4e-05 Score=73.88 Aligned_cols=184 Identities=10% Similarity=-0.024 Sum_probs=125.1
Q ss_pred CCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-c-hHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCH----HHH
Q 004856 433 VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLN-S-LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI----ITW 506 (727)
Q Consensus 433 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~ 506 (727)
.....+......+...|+++.|...++.+.+.... + ....+..+...|.+.|++++|...+++.....|+. ..+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34566777788899999999999999998875422 1 23466778889999999999999999975544532 245
Q ss_pred HHHHHHHHHc--------CChHHHHHHHHHHHHCCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHH
Q 004856 507 NSMISAYAKH--------GDWSQCFKLYTQMKQSDVRPDLI-TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHY 577 (727)
Q Consensus 507 ~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 577 (727)
..+..++... |+.++|.+.|+++... .|+.. .+..+..... .. .... ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~------~~~~---------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LR------NRLA---------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HH------HHHH---------HHH
Confidence 5555666654 7889999999999884 56543 2222211100 00 0000 011
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CC---CC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 004856 578 ASMVNLLGRAGHMDEARELVKDM-PF---KP-DARVWGPLLSACKMHSETELAELTAEKLISMEP 637 (727)
Q Consensus 578 ~~li~~~~~~g~~~~A~~~~~~~-~~---~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 637 (727)
..+...|.+.|++++|...+++. .. .| ....|..+..++...|++++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 24567788888888888888876 22 23 235777788888888888888888887766554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.2e-05 Score=69.99 Aligned_cols=154 Identities=12% Similarity=0.110 Sum_probs=111.1
Q ss_pred HHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHH
Q 004856 478 ISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEG 557 (727)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 557 (727)
-.|.+.|+++......+.+. .|. ..+...++.++++..+++..+.. +.|...|..+...|...|++++|
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~--~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLA--DPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHcchHHHHHHHHHHHh--Ccc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 45777777776654443322 111 01123566778888888877743 34678888999999999999999
Q ss_pred HHHHHHhHHhcCCCC-ChhHHHHHHHHH-HhcCC--HHHHHHHHHhC-CCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHH
Q 004856 558 RIIFKEMKESYGYEP-SQEHYASMVNLL-GRAGH--MDEARELVKDM-PFKPD-ARVWGPLLSACKMHSETELAELTAEK 631 (727)
Q Consensus 558 ~~~~~~~~~~~~~~p-~~~~~~~li~~~-~~~g~--~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~ 631 (727)
...|++..+. .| +...+..+..++ .+.|+ .++|.+++++. ...|+ ...+..+...+...|++++|+..+++
T Consensus 93 ~~a~~~Al~l---~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 93 LLAYRQALQL---RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999988853 44 566788888864 67777 58999999988 55664 45666666669999999999999999
Q ss_pred HHccCCCCcchHHH
Q 004856 632 LISMEPENAGNYVL 645 (727)
Q Consensus 632 ~~~~~p~~~~~~~~ 645 (727)
++++.|++..-+..
T Consensus 170 aL~l~~~~~~r~~~ 183 (198)
T PRK10370 170 VLDLNSPRVNRTQL 183 (198)
T ss_pred HHhhCCCCccHHHH
Confidence 99998876655543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.8e-05 Score=82.45 Aligned_cols=190 Identities=16% Similarity=0.156 Sum_probs=160.3
Q ss_pred hCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHH
Q 004856 464 LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLG 543 (727)
Q Consensus 464 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 543 (727)
.+++|--..-..+...+.+.|-...|..+|+++. .|...|.+|...|+..+|..+..+-.+ -+||+.-|..
T Consensus 392 ~~lpp~Wq~q~~laell~slGitksAl~I~Erle-------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~ 462 (777)
T KOG1128|consen 392 PHLPPIWQLQRLLAELLLSLGITKSALVIFERLE-------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCL 462 (777)
T ss_pred CCCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHH
Confidence 3456767777788899999999999999999765 788899999999999999999998887 3789999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCC
Q 004856 544 LLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSE 621 (727)
Q Consensus 544 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 621 (727)
+........-+++|+++.+....+ .-..+.....+.++++++.+.++.. .+.| -..+|-.+..+..+.++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhh
Confidence 999988888899999998765432 1122233344579999999999876 5555 45688888888889999
Q ss_pred HHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004856 622 TELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 622 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 670 (727)
++.|...|.....++|++...|+++..+|.+.|+..+|...+++..+.+
T Consensus 535 ~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred hHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999887765
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00014 Score=72.37 Aligned_cols=190 Identities=8% Similarity=0.033 Sum_probs=141.2
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCH
Q 004856 477 FISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHG-DWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLV 554 (727)
Q Consensus 477 i~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 554 (727)
-..+...++.++|....+++....| +...|+..-..+...| ++++++..++++.+.. +-+..+|+.....+.+.|..
T Consensus 44 ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCch
Confidence 3345566788888888888554455 5567887777777777 6799999999999853 22556677666666666653
Q ss_pred --HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHc---CC----HH
Q 004856 555 --EEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMH---SE----TE 623 (727)
Q Consensus 555 --~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~----~~ 623 (727)
+++..+++.+.+. -+-+...|+....++.+.|+++++++.++++ ...| +...|+.....+.+. |. .+
T Consensus 123 ~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 123 AANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHH
Confidence 6778888888854 3345778988889999999999999999998 4444 567888877665544 22 35
Q ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHHhc----CChhHHHHHHHHHHhC
Q 004856 624 LAELTAEKLISMEPENAGNYVLLSNIYAAA----GKWNGVAKMRTFLRDR 669 (727)
Q Consensus 624 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~~~ 669 (727)
.++....+++..+|+|..++..+..++... ++..+|.+......+.
T Consensus 201 ~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~ 250 (320)
T PLN02789 201 SELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK 250 (320)
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc
Confidence 678888899999999999999999999883 4456677777765543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.26 E-value=7.1e-05 Score=68.79 Aligned_cols=134 Identities=16% Similarity=0.115 Sum_probs=112.7
Q ss_pred CCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHhhHH
Q 004856 534 VRPD-LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM--PFKPDARVWG 610 (727)
Q Consensus 534 ~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~ 610 (727)
..|+ ... ..+-.++...|+-+....+...... ..+.+......++....+.|++.+|...+.+. .-.||...|+
T Consensus 62 ~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~ 138 (257)
T COG5010 62 RNPEDLSI-AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWN 138 (257)
T ss_pred cCcchHHH-HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhh
Confidence 3563 444 6677778888888888888777653 34455667777999999999999999999998 3445778899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004856 611 PLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 611 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 670 (727)
.+..+|.+.|++++|...|.+++++.|.++..+.+++-.|.-.|+.+.|..++......+
T Consensus 139 ~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 139 LLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 888889999999999999999999999999999999999999999999999998876654
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00024 Score=78.05 Aligned_cols=145 Identities=10% Similarity=0.030 Sum_probs=118.2
Q ss_pred CCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHH
Q 004856 465 GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD-IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD-LITFL 542 (727)
Q Consensus 465 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~ 542 (727)
..+.+...+..|.....+.|.+++|+.+++......|| ...+..++..+.+.+++++|+..+++.... .|+ .....
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHH
Confidence 34566888888999999999999999999997766775 457778889999999999999999999984 564 66677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHhhHHHHH
Q 004856 543 GLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM--PFKPDARVWGPLL 613 (727)
Q Consensus 543 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll 613 (727)
.+..++.+.|++++|..+|+++... .+-+...+..+...+-+.|+.++|...|++. ...|....|+.++
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 8888899999999999999999863 2233678889999999999999999999988 3344444555444
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0081 Score=61.08 Aligned_cols=173 Identities=12% Similarity=0.042 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCc-hHhHHHHHHHHHHhcCCHHHHHHHH
Q 004856 416 SLEALRLFSEMKLEG-VEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS-LSSVNTAIFISYAKCGCIEMAGELF 493 (727)
Q Consensus 416 ~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~ 493 (727)
.+.....++++...- +.|+ .+|...++.-.+..-++.|+.+|..+.+.+..+ ++.++++++..||. ++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 444445555554422 2232 345556666666666777777777777766555 66666777765553 5666677777
Q ss_pred Hh-ccCCCCCHHH-HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC
Q 004856 494 DE-EKIDSKDIIT-WNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD--LITFLGLLTACVNAGLVEEGRIIFKEMKESYG 569 (727)
Q Consensus 494 ~~-~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 569 (727)
+. ++. .+|... -+..+.-+...++-..|..+|++....++.|+ ...|..+|.--+.-|++..+.++-+++...+.
T Consensus 425 eLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 425 ELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 65 332 344333 34455666666777777777777776655554 34677777766777777777766666655433
Q ss_pred --CCCChhHHHHHHHHHHhcCCHH
Q 004856 570 --YEPSQEHYASMVNLLGRAGHMD 591 (727)
Q Consensus 570 --~~p~~~~~~~li~~~~~~g~~~ 591 (727)
..+....-..+++.|.-.+...
T Consensus 504 ~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 504 ADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred hhhcCCCChHHHHHHHHhhccccc
Confidence 2222233334455554444433
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.6e-06 Score=54.59 Aligned_cols=35 Identities=29% Similarity=0.519 Sum_probs=33.0
Q ss_pred chHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCc
Q 004856 97 LLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAE 131 (727)
Q Consensus 97 ~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 131 (727)
++||++|++|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00013 Score=80.68 Aligned_cols=149 Identities=9% Similarity=0.069 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 004856 472 VNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN 550 (727)
Q Consensus 472 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 550 (727)
.+..+..+|-+.|+.++|..+++++....| |+...|.+...|+.. +.++|++++.+.... +..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~ 181 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIK 181 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHh
Confidence 444555555555555555555555433323 445555555555555 555555555554432 333
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHH
Q 004856 551 AGLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTA 629 (727)
Q Consensus 551 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 629 (727)
.+++..+.++|.++... .|+ ...+..+.+.... ..+..--..++.-+-.-|....+++++..++
T Consensus 182 ~kq~~~~~e~W~k~~~~---~~~d~d~f~~i~~ki~~------------~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 182 KKQYVGIEEIWSKLVHY---NSDDFDFFLRIERKVLG------------HREFTRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred hhcchHHHHHHHHHHhc---CcccchHHHHHHHHHHh------------hhccchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 44555555555555532 222 2222222211111 1112223345555666688888999999999
Q ss_pred HHHHccCCCCcchHHHHHHHHH
Q 004856 630 EKLISMEPENAGNYVLLSNIYA 651 (727)
Q Consensus 630 ~~~~~~~p~~~~~~~~l~~~~~ 651 (727)
+.+++.+|.|..+..-++..|.
T Consensus 247 K~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 247 KKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhcCCcchhhHHHHHHHHH
Confidence 9999999999999998888877
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.2e-06 Score=53.98 Aligned_cols=35 Identities=37% Similarity=0.508 Sum_probs=32.6
Q ss_pred ccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCCh
Q 004856 199 SRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDS 233 (727)
Q Consensus 199 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 233 (727)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.6e-05 Score=67.94 Aligned_cols=96 Identities=10% Similarity=0.002 Sum_probs=82.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHH
Q 004856 574 QEHYASMVNLLGRAGHMDEARELVKDM-PFKPD-ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYA 651 (727)
Q Consensus 574 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 651 (727)
....-.+...+...|++++|.++|+-. ...|. ..-|..|...|...|++++|+..|.++..++|+|+.++..++.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 344455667778899999999999887 45664 4567777778999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhC
Q 004856 652 AAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 652 ~~g~~~~a~~~~~~m~~~ 669 (727)
..|+.+.|++-|+.....
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999987655
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00032 Score=70.28 Aligned_cols=136 Identities=17% Similarity=0.155 Sum_probs=76.5
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCC
Q 004856 512 AYAKHGDWSQCFKLYTQMKQSDVRPD-LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGH 589 (727)
Q Consensus 512 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~ 589 (727)
.+...|++++|+..++.++.. .|| ..-.......+...++.++|.+.++++.. ..|+ ....-.+.++|.+.|+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcCC
Confidence 344556666666666665553 343 33344445556666666666666666653 2444 3344555666666666
Q ss_pred HHHHHHHHHhC--CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 004856 590 MDEARELVKDM--PFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLR 667 (727)
Q Consensus 590 ~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 667 (727)
+.+|+.+++.. ..+-|+..|..|..+|...|+..++..... ..|...|+|++|.......+
T Consensus 390 ~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A-----------------E~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 390 PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA-----------------EGYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH-----------------HHHHhCCCHHHHHHHHHHHH
Confidence 66666666655 222245566666666666666555544332 34455667777777766666
Q ss_pred hC
Q 004856 668 DR 669 (727)
Q Consensus 668 ~~ 669 (727)
+.
T Consensus 453 ~~ 454 (484)
T COG4783 453 QQ 454 (484)
T ss_pred Hh
Confidence 55
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00096 Score=60.96 Aligned_cols=164 Identities=15% Similarity=0.231 Sum_probs=116.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC
Q 004856 476 IFISYAKCGCIEMAGELFDEEKIDSKDI---ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAG 552 (727)
Q Consensus 476 li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 552 (727)
++-+...+|+.+.|...++++....|.. .-..+| -+-..|++++|+++++..++.. +.|.+++..-+...-..|
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcC
Confidence 3334455677777777777654433432 222222 2345788999999999998865 446778887777777788
Q ss_pred CHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcC---CHHHHHH
Q 004856 553 LVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHS---ETELAEL 627 (727)
Q Consensus 553 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g---~~~~A~~ 627 (727)
+.-+|++-+....+. +..|.+.|.-+.+.|...|++++|.-.++++ -+.| ++..+..+...+...| +.+.+..
T Consensus 135 K~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 135 KNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred CcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 888888888888874 6778889999999999999999999999988 3455 3344455555533333 7888999
Q ss_pred HHHHHHccCCCCcchHH
Q 004856 628 TAEKLISMEPENAGNYV 644 (727)
Q Consensus 628 ~~~~~~~~~p~~~~~~~ 644 (727)
+|.+++++.|.+...+.
T Consensus 213 yy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 213 YYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHhChHhHHHHH
Confidence 99999999986655444
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0024 Score=58.88 Aligned_cols=69 Identities=13% Similarity=0.079 Sum_probs=32.8
Q ss_pred HHHHHHHHHhC--CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhH
Q 004856 590 MDEARELVKDM--PFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNG 658 (727)
Q Consensus 590 ~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 658 (727)
+.+|.-+|+++ ...|+..+.+-...++...|++++|+.+++.++..++.++.+...++-+-...|+-.+
T Consensus 189 ~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 189 IQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAE 259 (299)
T ss_pred hhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChH
Confidence 34444444444 1334444444444444555555555555555555555555555555544444444433
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.12 E-value=4e-06 Score=52.29 Aligned_cols=34 Identities=24% Similarity=0.454 Sum_probs=31.4
Q ss_pred cchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCC
Q 004856 96 SLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYP 129 (727)
Q Consensus 96 ~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p 129 (727)
+.+||.+|.+|++.|+++.|+++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999987
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0001 Score=63.87 Aligned_cols=94 Identities=21% Similarity=0.308 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhc
Q 004856 576 HYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAA 653 (727)
Q Consensus 576 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 653 (727)
....+...+...|++++|.+.+++. ...| +...|..+...+...|+++.|...++++++.+|+++..+..++.+|...
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 3444455555555555555555554 2233 3344444545555666666666666666666666666666666666666
Q ss_pred CChhHHHHHHHHHHhC
Q 004856 654 GKWNGVAKMRTFLRDR 669 (727)
Q Consensus 654 g~~~~a~~~~~~m~~~ 669 (727)
|++++|...++...+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 99 GEPESALKALDLAIEI 114 (135)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 6666666666655444
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.07 E-value=7.7e-05 Score=75.53 Aligned_cols=122 Identities=16% Similarity=0.150 Sum_probs=90.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHH
Q 004856 541 FLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKM 618 (727)
Q Consensus 541 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 618 (727)
...|+..+...++++.|..+++++.+. .|+ ....|+..+...++-.+|.+++.+. ...| +..........|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 344556666677777777777777754 344 3344666666677777777777766 3334 43344444455888
Q ss_pred cCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 004856 619 HSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLR 667 (727)
Q Consensus 619 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 667 (727)
.++++.|..+.+++.+..|.+..+|..|+.+|.+.|++++|.-.++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999888775
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0009 Score=67.16 Aligned_cols=137 Identities=11% Similarity=0.036 Sum_probs=81.8
Q ss_pred HHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHH
Q 004856 480 YAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD-LITFLGLLTACVNAGLVEEG 557 (727)
Q Consensus 480 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a 557 (727)
+...|++++|+..++.+....| |+..+......+...++..+|.+.++++.. ..|+ ......+..++.+.|+..+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcCChHHH
Confidence 4455666666666666544445 334444455666666667777777666666 3454 44455556666666666666
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004856 558 RIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISM 635 (727)
Q Consensus 558 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 635 (727)
+.+++.... ..+-|+..|..|..+|...|+..+|....-+ .+...|+++.|+..+..+.+.
T Consensus 394 i~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE---------------~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 394 IRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLARAE---------------GYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHHHH---------------HHHhCCCHHHHHHHHHHHHHh
Confidence 666666654 3444556666666666666666655543332 245566666666666666653
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.04 E-value=6.6e-06 Score=51.25 Aligned_cols=34 Identities=21% Similarity=0.474 Sum_probs=30.8
Q ss_pred cccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCC
Q 004856 198 KSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEF 231 (727)
Q Consensus 198 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 231 (727)
+.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3579999999999999999999999999999887
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.026 Score=57.54 Aligned_cols=426 Identities=11% Similarity=0.111 Sum_probs=232.5
Q ss_pred CCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCCC--CeehHHHHHH
Q 004856 230 EFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK--DRVVWNIMIS 307 (727)
Q Consensus 230 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~ 307 (727)
+-|..+|..||+-+-.. .+++++..+++++.. ++.....|..-|..-.+..+++..+++|.+...+ ++..|..-|+
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 34667888888877665 888888888888765 3556677888888888888888888888887553 6677777665
Q ss_pred HHHhc-CCchH----HHHHHHH-HHHcCCCCChhh----HHHHHHHhhcCC------ChHHHHHHHHHHHHhCCCCChhH
Q 004856 308 AYYQS-GFPKE----SLELLMC-MVRSGFRADLFT----AIAAVSSISTMK------NIEWGKQMHANVLRNGSDYQVSV 371 (727)
Q Consensus 308 ~~~~~-g~~~~----A~~~~~~-m~~~g~~p~~~t----~~~ll~~~~~~~------~~~~a~~~~~~~~~~g~~~~~~~ 371 (727)
.--+. |.... ..+-|+- |.+.|+.+-... |...+...-..| +++..+++++.++..-+..=...
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 43332 33222 1222322 233454443222 223333322333 34445555555543322211222
Q ss_pred HHHHHHHH-------------HhcCCHHHHHHHHhcCCC------CCh---------------hHHHHHHHHHHhcCCh-
Q 004856 372 HNSLIDMY-------------CECEDLNCARKIFDSVKT------KTV---------------VSWSSMIKGYVTHDQS- 416 (727)
Q Consensus 372 ~~~li~~~-------------~~~g~~~~A~~~~~~~~~------~~~---------------~~~~~li~~~~~~g~~- 416 (727)
|+-....- -+...+..|+++++++.. ++. ..|-.+|.-=..++--
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 32211100 011223444444443321 011 1133333221111100
Q ss_pred -------HHHHHHHHHH-HHCCCCCCHHH-HHHHH----HHHhcCCCh-------HHHHHHHHHHHHhCCCchHhHHHHH
Q 004856 417 -------LEALRLFSEM-KLEGVEVDFVT-IINIL----PACVNIGAL-------EHVKYLHGYSMKLGLNSLSSVNTAI 476 (727)
Q Consensus 417 -------~~A~~~~~~m-~~~g~~p~~~t-~~~ll----~a~~~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l 476 (727)
....-.+++. .-.+..|+..- +...+ +.+...|+. +++..+++..+..-...+...|..+
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~ 334 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFAL 334 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011111111 11222333211 11111 122333333 3344444444433333344444444
Q ss_pred HHHHHhcC---CHHHHHHHHHhccCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHh
Q 004856 477 FISYAKCG---CIEMAGELFDEEKID--SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVN 550 (727)
Q Consensus 477 i~~~~~~g---~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~ 550 (727)
.+.--..- ..+.....++++... ..-..+|...+..-.+..-...|..+|.+..+.+..+ ....+++++.-+|.
T Consensus 335 a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs 414 (656)
T KOG1914|consen 335 ADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS 414 (656)
T ss_pred HhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc
Confidence 33211111 134444445443321 1123467778888888888999999999999988777 56677788877765
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCC--HhhHHHHHHHHHHcCCHHHH
Q 004856 551 AGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM---PFKPD--ARVWGPLLSACKMHSETELA 625 (727)
Q Consensus 551 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~A 625 (727)
++.+-|.++|+.=.+++|-. +.-....++.+...++-..|..+|++. .+.|+ ...|..++.--..-|+...+
T Consensus 415 -kD~~~AfrIFeLGLkkf~d~--p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si 491 (656)
T KOG1914|consen 415 -KDKETAFRIFELGLKKFGDS--PEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSI 491 (656)
T ss_pred -CChhHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHH
Confidence 78899999999877765433 344466788888999999999999988 23444 36899999999999999999
Q ss_pred HHHHHHHHccCCCC----cchHHHHHHHHHhcCChhHHH
Q 004856 626 ELTAEKLISMEPEN----AGNYVLLSNIYAAAGKWNGVA 660 (727)
Q Consensus 626 ~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~ 660 (727)
..+-++....-|.+ ...-..+.+.|.-.+....-.
T Consensus 492 ~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~ 530 (656)
T KOG1914|consen 492 LKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSL 530 (656)
T ss_pred HHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccH
Confidence 99988887765522 123334555566555554433
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00022 Score=61.82 Aligned_cols=113 Identities=14% Similarity=0.096 Sum_probs=79.1
Q ss_pred HHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 004856 525 LYTQMKQSDVRPD-LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PF 602 (727)
Q Consensus 525 ~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 602 (727)
.+++... ..|+ ......+...+...|++++|...++.+... .+.+...+..+...+.+.|++++|..++++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455554 3453 344566667777788888888888877753 2335667777788888888888888887776 34
Q ss_pred CC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcc
Q 004856 603 KP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAG 641 (727)
Q Consensus 603 ~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 641 (727)
.| +...+..+...+...|+.+.|...++++++++|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 44 3456666666688888888888888888888886654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0032 Score=58.16 Aligned_cols=155 Identities=19% Similarity=0.195 Sum_probs=90.7
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh----cC
Q 004856 477 FISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN----AG 552 (727)
Q Consensus 477 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g 552 (727)
...|.+.|++++|.+...... .-+....+ +..+.+..+++-|.+.+++|.+ --+..|.+.|..++.+ .+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~--~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~---ided~tLtQLA~awv~la~gge 187 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE--NLEAAALN--VQILLKMHRFDLAEKELKKMQQ---IDEDATLTQLAQAWVKLATGGE 187 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc--hHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc---cchHHHHHHHHHHHHHHhccch
Confidence 344666777777777666522 22222222 2334555667777777777775 2355666666666544 34
Q ss_pred CHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHhhHHHHHHHHHHcC-CHHHHHHHH
Q 004856 553 LVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM--PFKPDARVWGPLLSACKMHS-ETELAELTA 629 (727)
Q Consensus 553 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g-~~~~A~~~~ 629 (727)
.+.+|.-+|++|.++ .+|+..+.+.+..++...|++++|..++++. ....++.+.-.++-.-...| +.+--.+..
T Consensus 188 k~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred hhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 567777777777753 5677777777777777777777777777766 22223444433443333333 445555666
Q ss_pred HHHHccCCCCc
Q 004856 630 EKLISMEPENA 640 (727)
Q Consensus 630 ~~~~~~~p~~~ 640 (727)
.++....|..+
T Consensus 266 ~QLk~~~p~h~ 276 (299)
T KOG3081|consen 266 SQLKLSHPEHP 276 (299)
T ss_pred HHHHhcCCcch
Confidence 66666666543
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.7e-05 Score=48.12 Aligned_cols=31 Identities=23% Similarity=0.615 Sum_probs=26.8
Q ss_pred chHHHHHHHHHcCCCchHHHHHHHHHHhCCC
Q 004856 97 LLYGTILKNLSKFGEYEKTLLVYKQMALQSM 127 (727)
Q Consensus 97 ~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~ 127 (727)
++||++|++|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999988764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0023 Score=58.58 Aligned_cols=162 Identities=16% Similarity=0.138 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHH-HHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 004856 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGL-LTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNL 583 (727)
Q Consensus 505 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 583 (727)
.|..++-+....|+.+.|...++++... + |.+.-...+ ..-+...|++++|.++++.+.++ -+.|..++..=+-.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAi 129 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHH
Confidence 4555566677889999999999999886 3 654322222 22345679999999999999975 24456677766666
Q ss_pred HHhcCCHHHHHHHHHhC--CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCCh---hH
Q 004856 584 LGRAGHMDEARELVKDM--PFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKW---NG 658 (727)
Q Consensus 584 ~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~---~~ 658 (727)
.-..|+--+|++-+.+. .+..|...|.-+-..|...|+++.|.-.+++++=..|.++..+..+++++.-.|.. +-
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 77788877888877776 46679999999999999999999999999999999999999999999998777754 45
Q ss_pred HHHHHHHHHhCC
Q 004856 659 VAKMRTFLRDRG 670 (727)
Q Consensus 659 a~~~~~~m~~~~ 670 (727)
+++++.+..+..
T Consensus 210 arkyy~~alkl~ 221 (289)
T KOG3060|consen 210 ARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHHhC
Confidence 777777665543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00067 Score=68.87 Aligned_cols=126 Identities=13% Similarity=0.100 Sum_probs=99.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 004856 472 VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNA 551 (727)
Q Consensus 472 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 551 (727)
...+|+..+...++++.|.++|+++....|++. -.++..+...++-.+|++++++.+... +-+...+......|.+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVA--VLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHH--HHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 334566667778899999999999886566644 347778888888999999999998742 33566666667778899
Q ss_pred CCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 004856 552 GLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGHMDEARELVKDMPFK 603 (727)
Q Consensus 552 g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 603 (727)
++++.|+.+.+++.+ ..|+ ..+|..|+.+|.+.|++++|+-.++.++..
T Consensus 248 ~~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 248 KKYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred CCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 999999999999985 4566 559999999999999999999999988644
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00072 Score=59.21 Aligned_cols=114 Identities=18% Similarity=0.181 Sum_probs=55.8
Q ss_pred cCChHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCh--hHHHHHHHHHHhcCC
Q 004856 516 HGDWSQCFKLYTQMKQSDVRPDL----ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQ--EHYASMVNLLGRAGH 589 (727)
Q Consensus 516 ~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~ 589 (727)
.++...+.+.++.+.... |+. .....+...+...|++++|...|+.+... ...|+. .....|...+...|+
T Consensus 24 ~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~ 100 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQ 100 (145)
T ss_pred CCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCC
Confidence 555555555555555532 221 22223344555556666666666665544 211211 123334555556666
Q ss_pred HHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004856 590 MDEARELVKDMPFKP-DARVWGPLLSACKMHSETELAELTAEKL 632 (727)
Q Consensus 590 ~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 632 (727)
+++|+..++.....+ ....+......+...|+.++|...|+++
T Consensus 101 ~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 101 YDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 666666665542111 2233333444466666666666666554
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.81 E-value=2.3e-05 Score=47.55 Aligned_cols=31 Identities=39% Similarity=0.520 Sum_probs=28.1
Q ss_pred ccHHHHHHHHHhCCCchhHHHHHHHHHhCCC
Q 004856 199 SRWNSLISLAVQNGKSEKSFELFKLMRMEGA 229 (727)
Q Consensus 199 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 229 (727)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999998774
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0017 Score=56.84 Aligned_cols=84 Identities=20% Similarity=0.194 Sum_probs=35.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCCH----hhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcC
Q 004856 580 MVNLLGRAGHMDEARELVKDM-PFKPDA----RVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAG 654 (727)
Q Consensus 580 li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 654 (727)
+...+...|++++|...|+.. ...|+. .....+...+...|++++|...++.. ...+-.+..+..++++|.+.|
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCC
Confidence 344444555555555555444 111221 12222233344455555555554331 111222334444455555555
Q ss_pred ChhHHHHHHH
Q 004856 655 KWNGVAKMRT 664 (727)
Q Consensus 655 ~~~~a~~~~~ 664 (727)
++++|+..|+
T Consensus 133 ~~~~A~~~y~ 142 (145)
T PF09976_consen 133 DYDEARAAYQ 142 (145)
T ss_pred CHHHHHHHHH
Confidence 5555555444
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0073 Score=67.42 Aligned_cols=240 Identities=10% Similarity=0.036 Sum_probs=152.7
Q ss_pred CCCC-hhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCCCCeehHHHHHH
Q 004856 229 AEFD-SGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMIS 307 (727)
Q Consensus 229 ~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 307 (727)
..|+ ...+..|+..+...+++++|.++.+..++..+ .....|-.+...|...++.+++..+ .++.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P-~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~ 91 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHK-KSISALYISGILSLSRRPLNDSNLL-------------NLID 91 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-cceehHHHHHHHHHhhcchhhhhhh-------------hhhh
Confidence 4443 44677788888888888888888886666532 1222233333356666665554444 2334
Q ss_pred HHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHH
Q 004856 308 AYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNC 387 (727)
Q Consensus 308 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 387 (727)
......++.-...+...|... .-+...+-.+..+|-+.|+.+++..+++.+++.. +.|+.+.|.+...|... ++++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 444444553344444445442 2344567778888888999999999999998887 66788889999889888 9999
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHh-CC
Q 004856 388 ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL-GL 466 (727)
Q Consensus 388 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~ 466 (727)
|.+++.+. +..|...+++.++.+++.++... .|+...+ -.++.+.+... +.
T Consensus 168 A~~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~---------------f~~i~~ki~~~~~~ 219 (906)
T PRK14720 168 AITYLKKA-----------IYRFIKKKQYVGIEEIWSKLVHY--NSDDFDF---------------FLRIERKVLGHREF 219 (906)
T ss_pred HHHHHHHH-----------HHHHHhhhcchHHHHHHHHHHhc--CcccchH---------------HHHHHHHHHhhhcc
Confidence 98887763 33477777888888888888875 3333222 11222222221 23
Q ss_pred CchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHH
Q 004856 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYA 514 (727)
Q Consensus 467 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~ 514 (727)
.--..++-.+-..|-..++++++..++..+....| |.....-++.+|.
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 33344555566677788888888888888654433 5556666666665
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00042 Score=58.34 Aligned_cols=101 Identities=13% Similarity=0.105 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HhhHHHHH
Q 004856 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP-SQEHYASMVNLLGRAGHMDEARELVKDM-PFKPD----ARVWGPLL 613 (727)
Q Consensus 540 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll 613 (727)
++..+...+...|++++|...++.+.+.+.-.+ ....+..+...+.+.|++++|.+.++++ ...|+ ..++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344455555556666666666666654311111 1223444555555555555555555554 22222 22344444
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCc
Q 004856 614 SACKMHSETELAELTAEKLISMEPENA 640 (727)
Q Consensus 614 ~~~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (727)
..+...|+.++|...++++++..|++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 445555555555555555555555443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0013 Score=64.34 Aligned_cols=164 Identities=10% Similarity=0.044 Sum_probs=115.2
Q ss_pred CCHHHHHHHH-HHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhH--
Q 004856 501 KDIITWNSMI-SAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEH-- 576 (727)
Q Consensus 501 ~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-- 576 (727)
|....|..+- .++.-.|++++|...--..++. .+ +......-..++-..++.+.+...|++.. .+.|+-..
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl--d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk 240 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKL--DATNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSK 240 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhc--ccchhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHH
Confidence 4445555443 3556778888888877666653 23 33333333334555677888888888776 34555322
Q ss_pred -----------HHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHh-----hHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 004856 577 -----------YASMVNLLGRAGHMDEARELVKDM-PFKPDAR-----VWGPLLSACKMHSETELAELTAEKLISMEPEN 639 (727)
Q Consensus 577 -----------~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-----~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 639 (727)
+..=.+-..+.|++.+|.+.+.+. .+.|+.. .|.....+..+.|+.++|+.-.+++++++|.-
T Consensus 241 ~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy 320 (486)
T KOG0550|consen 241 SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY 320 (486)
T ss_pred hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH
Confidence 112234456889999999999887 5566543 44444445678999999999999999999988
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 640 AGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 640 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
..+|..-++++...++|++|.+.++...+.
T Consensus 321 ikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 321 IKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 889999999999999999999998886554
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00035 Score=55.76 Aligned_cols=92 Identities=26% Similarity=0.290 Sum_probs=65.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcC
Q 004856 577 YASMVNLLGRAGHMDEARELVKDM-PFKPD-ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAG 654 (727)
Q Consensus 577 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 654 (727)
+..+...+...|++++|.+++++. ...|+ ...+..+...+...++++.|...++++.+..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445566666777777777777765 33343 3455555666777788888888888888887877777778888888888
Q ss_pred ChhHHHHHHHHHHh
Q 004856 655 KWNGVAKMRTFLRD 668 (727)
Q Consensus 655 ~~~~a~~~~~~m~~ 668 (727)
++++|...+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888887776654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00024 Score=66.68 Aligned_cols=99 Identities=17% Similarity=0.195 Sum_probs=74.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-hhHHHHHHHHHHcCC
Q 004856 545 LTACVNAGLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGHMDEARELVKDM-PFKPDA-RVWGPLLSACKMHSE 621 (727)
Q Consensus 545 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~ 621 (727)
..-..+.+++++|+..|.++++ +.|+ ...|..=..+|.+.|.++.|++-.+.. .+.|.. .+|..|..+|...|+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc
Confidence 4556677888888888888884 4554 556666778888888888888877766 566654 478888888888888
Q ss_pred HHHHHHHHHHHHccCCCCcchHHHH
Q 004856 622 TELAELTAEKLISMEPENAGNYVLL 646 (727)
Q Consensus 622 ~~~A~~~~~~~~~~~p~~~~~~~~l 646 (727)
+++|++.|+++++++|++......|
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHH
Confidence 8888888888888888776433333
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00088 Score=56.38 Aligned_cols=93 Identities=14% Similarity=0.064 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---cchHHHHHH
Q 004856 577 YASMVNLLGRAGHMDEARELVKDM-PFKPD----ARVWGPLLSACKMHSETELAELTAEKLISMEPEN---AGNYVLLSN 648 (727)
Q Consensus 577 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~ 648 (727)
+..++..+.+.|++++|.+.++++ ...|+ ...+..+...+...|+++.|...+++++...|++ +..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334444455555555555555544 11222 1223333444555555555555555555544432 233445555
Q ss_pred HHHhcCChhHHHHHHHHHHhC
Q 004856 649 IYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 649 ~~~~~g~~~~a~~~~~~m~~~ 669 (727)
++.+.|++++|...++.+.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 555555555555555554443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.68 E-value=5.5e-05 Score=59.01 Aligned_cols=77 Identities=18% Similarity=0.223 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHhC-CCCC---CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHH
Q 004856 588 GHMDEARELVKDM-PFKP---DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMR 663 (727)
Q Consensus 588 g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 663 (727)
|++++|+.+++++ ...| +...|..+..++.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4455555555544 1112 233344444555566666666666655 4445544455555566666666666666665
Q ss_pred HH
Q 004856 664 TF 665 (727)
Q Consensus 664 ~~ 665 (727)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 53
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00069 Score=69.10 Aligned_cols=102 Identities=17% Similarity=0.127 Sum_probs=67.0
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCH
Q 004856 545 LTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSET 622 (727)
Q Consensus 545 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 622 (727)
...+...|++++|+..|+++.+. -+.+...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 44556667777777777777753 2223556666777777777777777777766 4445 344565566667777777
Q ss_pred HHHHHHHHHHHccCCCCcchHHHHHH
Q 004856 623 ELAELTAEKLISMEPENAGNYVLLSN 648 (727)
Q Consensus 623 ~~A~~~~~~~~~~~p~~~~~~~~l~~ 648 (727)
++|+..++++++++|+++.....+..
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~ 112 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKE 112 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 77777777777777776665555443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00013 Score=54.37 Aligned_cols=64 Identities=23% Similarity=0.223 Sum_probs=57.3
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcC-ChhHHHHHHHHHHh
Q 004856 605 DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAG-KWNGVAKMRTFLRD 668 (727)
Q Consensus 605 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 668 (727)
+..+|..+...+...|++++|+..|+++++++|+++.++..++.+|...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 35678888888999999999999999999999999999999999999999 79999999987654
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0023 Score=68.22 Aligned_cols=139 Identities=10% Similarity=0.030 Sum_probs=80.5
Q ss_pred CCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhc--------CCHHHHHHHHHHhH
Q 004856 500 SKDIITWNSMISAYAKH-----GDWSQCFKLYTQMKQSDVRPD-LITFLGLLTACVNA--------GLVEEGRIIFKEMK 565 (727)
Q Consensus 500 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~--------g~~~~a~~~~~~~~ 565 (727)
..|...|...+.+.... ++..+|..+|++.++ ..|+ ...|..+..++... .++..+.+..+...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 45677777777765432 236688888998888 5676 44555544433221 11223333333322
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCc
Q 004856 566 ESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENA 640 (727)
Q Consensus 566 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (727)
.......+...|..+.-.....|++++|...++++ ...|+...|..+...+...|+.++|...+++++.++|.++
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 21012223455665555555567777777777766 4556666666666667777777777777777777777555
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0018 Score=63.56 Aligned_cols=133 Identities=11% Similarity=0.249 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh-cCCHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 004856 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN-AGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582 (727)
Q Consensus 504 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 582 (727)
..|-.++....+.+..+.|..+|.+.++.+ .-+...|......-.+ .++.+.|..+|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 468888888888888999999999998543 2345556555555333 56777799999999986 4566778889999
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCCH----hhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 004856 583 LLGRAGHMDEARELVKDM-PFKPDA----RVWGPLLSACKMHSETELAELTAEKLISMEPEN 639 (727)
Q Consensus 583 ~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 639 (727)
.+.+.|+.+.|..+|++. ..-|.. ..|...+..-.+.|+.+....+.+++.+..|++
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 999999999999999988 323333 489999999999999999999999999988753
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0011 Score=62.48 Aligned_cols=101 Identities=18% Similarity=0.246 Sum_probs=87.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhc
Q 004856 510 ISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRA 587 (727)
Q Consensus 510 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~ 587 (727)
..-+.+.+++.+|+..|.+.++ +.| |.+-|..-..+|++.|.++.|++-.+... .+.|. ...|..|..+|...
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHcc
Confidence 3456788999999999999999 566 78889999999999999999999988887 46776 56999999999999
Q ss_pred CCHHHHHHHHHhC-CCCCCHhhHHHHHHH
Q 004856 588 GHMDEARELVKDM-PFKPDARVWGPLLSA 615 (727)
Q Consensus 588 g~~~~A~~~~~~~-~~~p~~~~~~~ll~~ 615 (727)
|++++|++.|++. .+.|+..+|..-+..
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 9999999999988 789988877665554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00017 Score=53.52 Aligned_cols=53 Identities=19% Similarity=0.285 Sum_probs=45.9
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 617 KMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 617 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
...|++++|+..++++++.+|++..+...++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999876555
|
... |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.2 Score=54.66 Aligned_cols=183 Identities=11% Similarity=0.049 Sum_probs=78.1
Q ss_pred HhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChH---
Q 004856 209 VQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLE--- 285 (727)
Q Consensus 209 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~--- 285 (727)
.+.|+.++|..+++.....+.. |..|.-.+-.+|.+.+..+++..+|+.+.... |+......+..+|.|.+++.
T Consensus 54 ~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQ 130 (932)
T KOG2053|consen 54 FRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQ 130 (932)
T ss_pred HHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554433322 44455555555555555555555555555432 33444444455555544433
Q ss_pred -HHHHHHhcCCCCCeehHHHHHHHHHhcCCch---------HHHHHHHHHHHcC-CCCChhhHHHHHHHhhcCCChHHHH
Q 004856 286 -DAKMLFDKMSDKDRVVWNIMISAYYQSGFPK---------ESLELLMCMVRSG-FRADLFTAIAAVSSISTMKNIEWGK 354 (727)
Q Consensus 286 -~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~---------~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~ 354 (727)
.|.+++...+++--..|+.+--.+......+ -|.+.++.+.+.+ -.-+..-...-+..+...+..++|.
T Consensus 131 kaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal 210 (932)
T KOG2053|consen 131 KAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEAL 210 (932)
T ss_pred HHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHH
Confidence 2445555444433333333221111111111 1333334443332 1111111222223334455566666
Q ss_pred HHHHHHH-HhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhc
Q 004856 355 QMHANVL-RNGSDYQVSVHNSLIDMYCECEDLNCARKIFDS 394 (727)
Q Consensus 355 ~~~~~~~-~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 394 (727)
.++..-. +.-..-+...-+.-++.+...+++.+..++-.+
T Consensus 211 ~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 211 EFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 6653222 222222333344555556666666554444333
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.016 Score=50.41 Aligned_cols=155 Identities=13% Similarity=0.105 Sum_probs=113.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH
Q 004856 511 SAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHM 590 (727)
Q Consensus 511 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 590 (727)
.+..+.=+++....-..+-.+ +.|+...-..|..+....|+..+|...|++...- -+.-|....-.+.++....+++
T Consensus 64 ~a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~ 140 (251)
T COG4700 64 MALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEF 140 (251)
T ss_pred HHHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccH
Confidence 344444455544443333333 5677777778889999999999999999988863 3445677788888889999999
Q ss_pred HHHHHHHHhC-CCCCC---HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 004856 591 DEARELVKDM-PFKPD---ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFL 666 (727)
Q Consensus 591 ~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 666 (727)
.+|...+++. ...|+ +.....+...+...|..+.|+..++.+++--| ++.........+.++|+.+++..-+..+
T Consensus 141 A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 141 AAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 9999999887 22232 22444556668999999999999999999888 6777778888899999888877665555
Q ss_pred HhC
Q 004856 667 RDR 669 (727)
Q Consensus 667 ~~~ 669 (727)
.+.
T Consensus 220 ~d~ 222 (251)
T COG4700 220 VDT 222 (251)
T ss_pred HHH
Confidence 443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00028 Score=51.76 Aligned_cols=57 Identities=16% Similarity=0.209 Sum_probs=47.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 613 LSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 613 l~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
...+...|++++|+..++++++..|+++.++..++.++...|++++|..+++++.+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345778888999999999999988988888889999999999999999888887654
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0035 Score=56.73 Aligned_cols=129 Identities=12% Similarity=0.199 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChhHHHH
Q 004856 503 IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD--LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP-SQEHYAS 579 (727)
Q Consensus 503 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 579 (727)
...+..+...+...|++++|+..|++..+....+. ...+..+..++.+.|++++|...+++..+. .| +...+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~ 111 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNN 111 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHH
Confidence 44566777777888888888888888876432222 356777778888888888888888887753 34 3556666
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCC
Q 004856 580 MVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGK 655 (727)
Q Consensus 580 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 655 (727)
+..+|...|+...+..-++.. ...+++|.+.++++++.+|++ |..++..+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 677777777665555333221 113677888888888888865 4444444444443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.15 Score=50.84 Aligned_cols=108 Identities=20% Similarity=0.240 Sum_probs=72.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 004856 474 TAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL 553 (727)
Q Consensus 474 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 553 (727)
+..+.-+...|+...|.++-.+.. -||-.-|-..+.+|+..++|++-.++... +-.++-|...+.+|.+.|.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk--v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK--VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC--CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 334455566777777777777776 67777788888888888888766654321 1234667777788888888
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 004856 554 VEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM 600 (727)
Q Consensus 554 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 600 (727)
..+|..+...+. +..-+..|.++|++.+|.+.--+.
T Consensus 253 ~~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 253 KKEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 777777765521 134467777788877777665543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0059 Score=52.48 Aligned_cols=97 Identities=11% Similarity=0.058 Sum_probs=73.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 004856 475 AIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL 553 (727)
Q Consensus 475 ~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 553 (727)
.+...+...|++++|..+|+-+....| +..-|-.|..++...|++++|+..|....... +-|+.++-.+..++...|+
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCC
Confidence 444556778888888888887554445 56677888888888899999999998888743 2357788888888888999
Q ss_pred HHHHHHHHHHhHHhcCCCC
Q 004856 554 VEEGRIIFKEMKESYGYEP 572 (727)
Q Consensus 554 ~~~a~~~~~~~~~~~~~~p 572 (727)
.+.|++.|+......+-.|
T Consensus 119 ~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 119 VCYAIKALKAVVRICGEVS 137 (157)
T ss_pred HHHHHHHHHHHHHHhccCh
Confidence 9999999888876533333
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0022 Score=65.41 Aligned_cols=103 Identities=16% Similarity=0.194 Sum_probs=85.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHh
Q 004856 509 MISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP-SQEHYASMVNLLGR 586 (727)
Q Consensus 509 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~ 586 (727)
....+...|++++|++.|++.++. .| +...|..+..+|...|++++|+..++.+... .| +...|..+..+|..
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIEL---DPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHH
Confidence 345677889999999999999984 45 5778889999999999999999999999854 45 46688899999999
Q ss_pred cCCHHHHHHHHHhC-CCCCCHhhHHHHHHHH
Q 004856 587 AGHMDEARELVKDM-PFKPDARVWGPLLSAC 616 (727)
Q Consensus 587 ~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~ 616 (727)
.|++++|...|++. .+.|+.......+..|
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999988 5677665555555443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0019 Score=61.24 Aligned_cols=102 Identities=15% Similarity=0.098 Sum_probs=81.2
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHH-HHHcC--CHHHHHHHHHHHHccCCCCcchHHH
Q 004856 571 EPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSA-CKMHS--ETELAELTAEKLISMEPENAGNYVL 645 (727)
Q Consensus 571 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~-~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~ 645 (727)
+-|...|..|...|.+.|++..|..-|.+. .+.| ++..+..+..+ +...| +..++..++++++.++|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 456778888888888888888888888877 4444 44455555555 33333 6778899999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCc
Q 004856 646 LSNIYAAAGKWNGVAKMRTFLRDRGLK 672 (727)
Q Consensus 646 l~~~~~~~g~~~~a~~~~~~m~~~~~~ 672 (727)
|+..+...|++.+|...|+.|.+....
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999887553
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.17 Score=50.36 Aligned_cols=110 Identities=15% Similarity=0.206 Sum_probs=86.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc
Q 004856 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH 619 (727)
Q Consensus 540 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~ 619 (727)
+.+.-+.-|...|....|.++..+. .+ |+...|...+.+|+..|+|++-.++... +..++-|..++.+|...
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKY 250 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHC
Confidence 4555567777888888777665443 44 8889999999999999999998887654 34568999999999999
Q ss_pred CCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 004856 620 SETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFL 666 (727)
Q Consensus 620 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 666 (727)
|+..+|..+..++ .+..-+.+|.+.|+|.+|.+.-.+.
T Consensus 251 ~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 251 GNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999999888871 2256678899999999998875543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0019 Score=58.55 Aligned_cols=79 Identities=15% Similarity=0.135 Sum_probs=46.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHH
Q 004856 577 YASMVNLLGRAGHMDEARELVKDM-PFKPD----ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYA 651 (727)
Q Consensus 577 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 651 (727)
+..+...+.+.|++++|...+++. ...|+ ...+..+...+...|++++|+..++++++..|.+...+..++.+|.
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 117 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH 117 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 444444444555555555555444 11111 2345555555677777777777777777777777777777777776
Q ss_pred hcCC
Q 004856 652 AAGK 655 (727)
Q Consensus 652 ~~g~ 655 (727)
..|+
T Consensus 118 ~~g~ 121 (172)
T PRK02603 118 KRGE 121 (172)
T ss_pred HcCC
Confidence 6665
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0016 Score=58.80 Aligned_cols=93 Identities=11% Similarity=-0.089 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHH
Q 004856 574 QEHYASMVNLLGRAGHMDEARELVKDM-PFKPD----ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSN 648 (727)
Q Consensus 574 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 648 (727)
...|..++..+...|++++|...+++. ...|+ ..+|..+...+...|+.++|+..+++++.+.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 445566667777777888888777766 22222 2367777777889999999999999999999988888888888
Q ss_pred HHH-------hcCChhHHHHHHHHH
Q 004856 649 IYA-------AAGKWNGVAKMRTFL 666 (727)
Q Consensus 649 ~~~-------~~g~~~~a~~~~~~m 666 (727)
++. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 887 888888776666654
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0027 Score=50.47 Aligned_cols=91 Identities=19% Similarity=0.226 Sum_probs=42.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 004856 506 WNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585 (727)
Q Consensus 506 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 585 (727)
|..+...+...|++++|+..+++..+.. +.+...+..+...+...+++++|.+.++..... .+.+...+..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHH
Confidence 3344455555556666666655555431 112344444555555555555555555555432 1122234444444444
Q ss_pred hcCCHHHHHHHHHh
Q 004856 586 RAGHMDEARELVKD 599 (727)
Q Consensus 586 ~~g~~~~A~~~~~~ 599 (727)
..|+.++|...+.+
T Consensus 80 ~~~~~~~a~~~~~~ 93 (100)
T cd00189 80 KLGKYEEALEAYEK 93 (100)
T ss_pred HHHhHHHHHHHHHH
Confidence 44444444444433
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00099 Score=48.83 Aligned_cols=61 Identities=21% Similarity=0.293 Sum_probs=44.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCc
Q 004856 580 MVNLLGRAGHMDEARELVKDM-PFKPD-ARVWGPLLSACKMHSETELAELTAEKLISMEPENA 640 (727)
Q Consensus 580 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (727)
+...+.+.|++++|++.|++. ...|+ ...|..+...+...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456677788888888888877 44564 44666777778888888888888888888888753
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00099 Score=51.85 Aligned_cols=80 Identities=19% Similarity=0.332 Sum_probs=42.9
Q ss_pred cCChHHHHHHHHHHHHCCC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHH
Q 004856 516 HGDWSQCFKLYTQMKQSDV-RPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGHMDEA 593 (727)
Q Consensus 516 ~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 593 (727)
.|+++.|+.+++++.+..- .|+...+..+..++.+.|++++|..+++. . ...|+ ......+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 4566667777776666321 01233344456666666777777666666 2 12222 23333446666666666666
Q ss_pred HHHHHh
Q 004856 594 RELVKD 599 (727)
Q Consensus 594 ~~~~~~ 599 (727)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.068 Score=55.69 Aligned_cols=51 Identities=24% Similarity=0.123 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 004856 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM 600 (727)
Q Consensus 540 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 600 (727)
+...+...+.+...+.-|-++|..|-.. .+++++....+++.+|..+-++.
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~----------ksiVqlHve~~~W~eAFalAe~h 799 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL----------KSLVQLHVETQRWDEAFALAEKH 799 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH----------HHHhhheeecccchHhHhhhhhC
Confidence 3333334444444555555565555321 23455556666666666666655
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.02 Score=56.58 Aligned_cols=24 Identities=17% Similarity=0.540 Sum_probs=10.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Q 004856 508 SMISAYAKHGDWSQCFKLYTQMKQ 531 (727)
Q Consensus 508 ~li~~~~~~g~~~~A~~~~~~m~~ 531 (727)
.+...+.+.|++++|+++|++...
T Consensus 160 ~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 160 KAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 333444444444444444444443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0034 Score=54.17 Aligned_cols=89 Identities=9% Similarity=0.054 Sum_probs=74.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChh
Q 004856 580 MVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWN 657 (727)
Q Consensus 580 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 657 (727)
...-+...|++++|..+|.-+ -..| +..-|..|...|...++++.|+..|..+..++++|+.++...+.+|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 344455788999999888876 2233 44457777777899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 004856 658 GVAKMRTFLRD 668 (727)
Q Consensus 658 ~a~~~~~~m~~ 668 (727)
.|+..|....+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999987766
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0012 Score=49.79 Aligned_cols=57 Identities=9% Similarity=0.109 Sum_probs=50.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004856 614 SACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 614 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 670 (727)
..+.+.+++++|..+++++++++|+++..+...+.++.+.|++++|.+.++...+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 457788999999999999999999999999999999999999999999998887653
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.33 Score=51.99 Aligned_cols=135 Identities=13% Similarity=0.037 Sum_probs=75.7
Q ss_pred hCCCCCChhhHHH-----HHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCC---ChHHHHHHHhcCCC-
Q 004856 226 MEGAEFDSGTLIN-----LLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA---SLEDAKMLFDKMSD- 296 (727)
Q Consensus 226 ~~g~~p~~~t~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~- 296 (727)
.-|++.+..-|.. +++-+...+.+..|.++-..+-..-... ..++.....-+.+.. +-+.+..+=+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 4466666655543 4555666677777777766653221111 456666666666553 23344555555555
Q ss_pred -CCeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCC----CChhhHHHHHHHhhcCCChHHHHHHHHHHH
Q 004856 297 -KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR----ADLFTAIAAVSSISTMKNIEWGKQMHANVL 361 (727)
Q Consensus 297 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 361 (727)
...++|..+.+-..+.|+.+-|..+++.=...+-+ .+..-+...+.-+...|+.+...+++-++.
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk 573 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLK 573 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 46678888888888889988888877542111100 112223344455555666655555554443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.012 Score=46.81 Aligned_cols=79 Identities=14% Similarity=0.283 Sum_probs=65.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCC-CCChHHHHHHHHHHHhcC--------CHHHHHHHHHHhHHhcCCCCChhHH
Q 004856 507 NSMISAYAKHGDWSQCFKLYTQMKQSDV-RPDLITFLGLLTACVNAG--------LVEEGRIIFKEMKESYGYEPSQEHY 577 (727)
Q Consensus 507 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~~~ 577 (727)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-+.+.+|+.|... +++|+..+|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHH
Confidence 3456667777999999999999999999 899999999999877653 345678888999887 899999999
Q ss_pred HHHHHHHHh
Q 004856 578 ASMVNLLGR 586 (727)
Q Consensus 578 ~~li~~~~~ 586 (727)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999887764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00029 Score=43.32 Aligned_cols=34 Identities=29% Similarity=0.516 Sum_probs=31.2
Q ss_pred HHHHHHccCCCCcchHHHHHHHHHhcCChhHHHH
Q 004856 628 TAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAK 661 (727)
Q Consensus 628 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 661 (727)
+|+++++++|+++.+|..|+.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999863
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.016 Score=61.99 Aligned_cols=133 Identities=16% Similarity=0.113 Sum_probs=96.8
Q ss_pred CCCChHHHHHHHHHHHhc-----CCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhc--------CCHHHHHHHHHh
Q 004856 534 VRPDLITFLGLLTACVNA-----GLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRA--------GHMDEARELVKD 599 (727)
Q Consensus 534 ~~p~~~t~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~--------g~~~~A~~~~~~ 599 (727)
.+.|...|...+++.... +..+.|..+|++..+ .+|+ ...|..+..++... +++..+.+..++
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 455788888888885543 237789999999985 4777 34555544444321 223455555555
Q ss_pred C---C-CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004856 600 M---P-FKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 600 ~---~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 670 (727)
. + ...+...+..+.-.....|++++|...++++++++| +..+|..++.++...|+.++|.+.+++.....
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3 1 223446677776666778999999999999999999 68899999999999999999999999876654
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.031 Score=50.33 Aligned_cols=80 Identities=10% Similarity=0.152 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHH
Q 004856 503 IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP--DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS-QEHYAS 579 (727)
Q Consensus 503 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 579 (727)
...|..+...+...|++++|+..|++.......| ...++..+...+...|++++|+..++..... .|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~---~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER---NPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCcHHHHHH
Confidence 4566667777777888888888888887642222 1346777778888888888888888877743 333 344555
Q ss_pred HHHHHH
Q 004856 580 MVNLLG 585 (727)
Q Consensus 580 li~~~~ 585 (727)
+...+.
T Consensus 112 la~i~~ 117 (168)
T CHL00033 112 MAVICH 117 (168)
T ss_pred HHHHHH
Confidence 555555
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.006 Score=48.51 Aligned_cols=79 Identities=11% Similarity=0.025 Sum_probs=66.7
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHcCC-CCChhhHHHHHHHhhcCC--------ChHHHHHHHHHHHHhCCCCChhHHH
Q 004856 303 NIMISAYYQSGFPKESLELLMCMVRSGF-RADLFTAIAAVSSISTMK--------NIEWGKQMHANVLRNGSDYQVSVHN 373 (727)
Q Consensus 303 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~~ 373 (727)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456666777999999999999999999 999999999999887653 2446678899999999999999999
Q ss_pred HHHHHHHh
Q 004856 374 SLIDMYCE 381 (727)
Q Consensus 374 ~li~~~~~ 381 (727)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99887764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.52 Score=49.97 Aligned_cols=153 Identities=10% Similarity=-0.000 Sum_probs=84.7
Q ss_pred cCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCCC-----CeehHHHHHHHHHhcCCchHHHH
Q 004856 246 LKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK-----DRVVWNIMISAYYQSGFPKESLE 320 (727)
Q Consensus 246 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~ 320 (727)
-|++++|+++|-.+-+.+ ..|.++.+.|++-...++++.-... -...|+.+...++....|++|.+
T Consensus 747 ~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777776655442 3366677777777777777654322 12357777777777777777777
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh
Q 004856 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400 (727)
Q Consensus 321 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 400 (727)
.|..-.. . ...+.++.+..++++-+.+- ..++-+....-.+.+++.+.|.-++|.+.|-+...|.
T Consensus 818 yY~~~~~------~---e~~~ecly~le~f~~LE~la-----~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk- 882 (1189)
T KOG2041|consen 818 YYSYCGD------T---ENQIECLYRLELFGELEVLA-----RTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK- 882 (1189)
T ss_pred HHHhccc------h---HhHHHHHHHHHhhhhHHHHH-----HhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-
Confidence 7655321 1 11223333333332222221 1234455555666677777777777776665544442
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHH
Q 004856 401 VSWSSMIKGYVTHDQSLEALRLFSEM 426 (727)
Q Consensus 401 ~~~~~li~~~~~~g~~~~A~~~~~~m 426 (727)
+-+..|...+++.+|.++-++.
T Consensus 883 ----aAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 883 ----AAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhc
Confidence 2234455556666666655443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0029 Score=61.77 Aligned_cols=129 Identities=14% Similarity=0.076 Sum_probs=92.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH---hHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-------CC-CCCHh
Q 004856 540 TFLGLLTACVNAGLVEEGRIIFKE---MKESYGYEPS-QEHYASMVNLLGRAGHMDEARELVKDM-------PF-KPDAR 607 (727)
Q Consensus 540 t~~~ll~~~~~~g~~~~a~~~~~~---~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~-~p~~~ 607 (727)
.|..|.+.|.-.|+++.|+...+. +.+.||-+.. ...+..|.+++.-.|+++.|.+.++.. +. .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 466666666677889998877653 3334454433 447788899999999999999888764 21 12344
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHcc----C--CCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004856 608 VWGPLLSACKMHSETELAELTAEKLISM----E--PENAGNYVLLSNIYAAAGKWNGVAKMRTFLRD 668 (727)
Q Consensus 608 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 668 (727)
+..+|.+.|.-..+++.|+.+..+=+.+ + .....++..|+++|...|..+.|..+.....+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 6667888888888899999887775543 2 22456788999999999999999888776543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.021 Score=56.12 Aligned_cols=128 Identities=13% Similarity=0.118 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHH
Q 004856 402 SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPA-CVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISY 480 (727)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 480 (727)
+|-.++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. ++.+...+...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34444444444444555555555554321 1112222222211 22234444455555555443 244455555556666
Q ss_pred HhcCCHHHHHHHHHhccCCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004856 481 AKCGCIEMAGELFDEEKIDSKDI----ITWNSMISAYAKHGDWSQCFKLYTQMKQ 531 (727)
Q Consensus 481 ~~~g~~~~A~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~ 531 (727)
.+.|+.+.|..+|++....-+.. ..|...+.-=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666643322322 3566666666666666666666666655
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0075 Score=61.67 Aligned_cols=123 Identities=15% Similarity=0.089 Sum_probs=87.1
Q ss_pred CCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHh--CCCchHhHHHHHHHHHHhcCCHHHHHHHHHhc--cCCCCCHH
Q 004856 429 EGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL--GLNSLSSVNTAIFISYAKCGCIEMAGELFDEE--KIDSKDII 504 (727)
Q Consensus 429 ~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~ 504 (727)
.+...+...+..+++.+....+++.+..++-..... .......+..++|+.|.+.|..+++..+++.- -+.-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 345667778888888888888888888876666654 22223334457788888888888888877762 22357888
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 004856 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNA 551 (727)
Q Consensus 505 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 551 (727)
++|.++..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888877777776666777777666666654
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.092 Score=48.61 Aligned_cols=170 Identities=11% Similarity=-0.010 Sum_probs=114.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCC--Ch--------hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004856 372 HNSLIDMYCECEDLNCARKIFDSVKTK--TV--------VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINI 441 (727)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~~~~~--~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 441 (727)
+++|...|.-..-+++-...|+.-..+ .+ ..-+.++..+.-.|.+.-.+..+++..+....-++.....+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 556666665555555555555443322 22 23456777777788888889999999887666677778888
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhCCC-----chHhHHHHHHHHHHhcCCHHHHHHHHHhccCCC-CCHHHHHHHHHHHHH
Q 004856 442 LPACVNIGALEHVKYLHGYSMKLGLN-----SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDS-KDIITWNSMISAYAK 515 (727)
Q Consensus 442 l~a~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~ 515 (727)
.+.-.+.|+.+.|...++...+..-. ....+.......|.-.+++..|...|+++.... .|++.-|.-.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 88888999999999999877764333 333333344445667788888888888866443 355666665555666
Q ss_pred cCChHHHHHHHHHHHHCCCCCChHHHHH
Q 004856 516 HGDWSQCFKLYTQMKQSDVRPDLITFLG 543 (727)
Q Consensus 516 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 543 (727)
.|+..+|++..+.|+. ..|...+-++
T Consensus 299 lg~l~DAiK~~e~~~~--~~P~~~l~es 324 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQ--QDPRHYLHES 324 (366)
T ss_pred HHHHHHHHHHHHHHhc--cCCccchhhh
Confidence 7888899999988887 4565554443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.72 Score=50.63 Aligned_cols=219 Identities=11% Similarity=0.061 Sum_probs=144.3
Q ss_pred HHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHh--cccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCCh
Q 004856 207 LAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRST--VELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASL 284 (727)
Q Consensus 207 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 284 (727)
.....+++.+|+.....+.+. .|+. .|..++.++ .+.|..++|..+++.....+.. |..+...+-..|...++.
T Consensus 18 d~ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhh
Confidence 345568889999988888765 3554 455666665 5789999999888877666544 888899999999999999
Q ss_pred HHHHHHHhcCCCCCe--ehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCC----------ChHH
Q 004856 285 EDAKMLFDKMSDKDR--VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK----------NIEW 352 (727)
Q Consensus 285 ~~A~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----------~~~~ 352 (727)
++|..++++....++ .....+..+|++-+.+.+-.+.--+|-+ .++-+...|.++++...+.- -+..
T Consensus 94 d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 94 DEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred hHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 999999999977544 3444555677777766654333333332 24446777888777655321 1234
Q ss_pred HHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhc-----CCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 004856 353 GKQMHANVLRNGSDYQ-VSVHNSLIDMYCECEDLNCARKIFDS-----VKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM 426 (727)
Q Consensus 353 a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 426 (727)
|....+.+++.+-+.. ..=.-.-.......|++++|.+++.. ...-+...-+--+..+...+++.+..++-.++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 5556666655541111 11112223344567889999998832 22234444455566777888888888888888
Q ss_pred HHCC
Q 004856 427 KLEG 430 (727)
Q Consensus 427 ~~~g 430 (727)
...|
T Consensus 253 l~k~ 256 (932)
T KOG2053|consen 253 LEKG 256 (932)
T ss_pred HHhC
Confidence 8775
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.015 Score=59.54 Aligned_cols=118 Identities=12% Similarity=0.092 Sum_probs=84.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHH
Q 004856 399 TVVSWSSMIKGYVTHDQSLEALRLFSEMKLE--GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAI 476 (727)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 476 (727)
..+....++.......+.+++..++.+.... ....-..|..+++..|...|..+.+..++..=...|+-||..+++.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4455666777777777788888888887765 22233445568888888888888888888888888888999999999
Q ss_pred HHHHHhcCCHHHHHHHHHhccCC--CCCHHHHHHHHHHHHHc
Q 004856 477 FISYAKCGCIEMAGELFDEEKID--SKDIITWNSMISAYAKH 516 (727)
Q Consensus 477 i~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~ 516 (727)
++.+.+.|++..|.++...|... ..+..++..-+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999998888888875422 22334444444444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.48 Score=47.79 Aligned_cols=232 Identities=13% Similarity=0.072 Sum_probs=128.8
Q ss_pred HCCCCCCHHHH-HHHHHHHhcCCChHHHHHHHHHHHHhCCCc----hHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCC
Q 004856 428 LEGVEVDFVTI-INILPACVNIGALEHVKYLHGYSMKLGLNS----LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD 502 (727)
Q Consensus 428 ~~g~~p~~~t~-~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 502 (727)
..-+.|+.... ..+...+.. +.+++..+.+.+....+.+ -...+..++....+.++...|...+.-+....|+
T Consensus 253 ~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~ 330 (549)
T PF07079_consen 253 NFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPR 330 (549)
T ss_pred hhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCc
Confidence 33355654322 334444433 4455544444443332221 2345556666667777777777777665443444
Q ss_pred HHHH-------HHHHHHHH----HcCChHHHHHHHHHHHHCCCCCChHHHHHHHH---HHHhcCC-HHHHHHHHHHhHHh
Q 004856 503 IITW-------NSMISAYA----KHGDWSQCFKLYTQMKQSDVRPDLITFLGLLT---ACVNAGL-VEEGRIIFKEMKES 567 (727)
Q Consensus 503 ~~~~-------~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~---~~~~~g~-~~~a~~~~~~~~~~ 567 (727)
...- ..+-+..+ ..-+...=+.+|+......+.-.. -...|+. -+-+.|. -++|+++++.+.+
T Consensus 331 ~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQ-Lvh~L~~~Ak~lW~~g~~dekalnLLk~il~- 408 (549)
T PF07079_consen 331 ISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQ-LVHYLVFGAKHLWEIGQCDEKALNLLKLILQ- 408 (549)
T ss_pred chhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHH-HHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-
Confidence 3211 11112222 112333445566666554322211 1111222 2334444 6788888887774
Q ss_pred cCCCC-ChhHHHHHH----HHHHhc---CC---HHHHHHHHHhCCCCC----CHhhHHHHHHH--HHHcCCHHHHHHHHH
Q 004856 568 YGYEP-SQEHYASMV----NLLGRA---GH---MDEARELVKDMPFKP----DARVWGPLLSA--CKMHSETELAELTAE 630 (727)
Q Consensus 568 ~~~~p-~~~~~~~li----~~~~~~---g~---~~~A~~~~~~~~~~p----~~~~~~~ll~~--~~~~g~~~~A~~~~~ 630 (727)
+.| |..+-+.+. ..|..+ .. +-+-+.++++.++.| +...-|.|..| +..+|++.++.-...
T Consensus 409 --ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~ 486 (549)
T PF07079_consen 409 --FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSS 486 (549)
T ss_pred --hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 333 333322221 112111 11 222344455556655 34467777777 778999999999888
Q ss_pred HHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 004856 631 KLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFL 666 (727)
Q Consensus 631 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 666 (727)
-+.++.| ++.+|..++-++....++++|.+++..+
T Consensus 487 WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 487 WLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 8889999 8999999999999999999999999864
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0014 Score=48.73 Aligned_cols=64 Identities=22% Similarity=0.257 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHHcC-CHHHHHHHHHHHHccCC
Q 004856 574 QEHYASMVNLLGRAGHMDEARELVKDM-PFKPD-ARVWGPLLSACKMHS-ETELAELTAEKLISMEP 637 (727)
Q Consensus 574 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g-~~~~A~~~~~~~~~~~p 637 (727)
...|..+...+...|++++|+..|++. ...|+ ...|..+..++...| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 445666666666677777777666665 33443 345555666677777 57777777777777766
|
... |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.019 Score=51.96 Aligned_cols=104 Identities=17% Similarity=0.107 Sum_probs=65.7
Q ss_pred CCHHHHHHHHHHHhc-----CCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHH
Q 004856 433 VDFVTIINILPACVN-----IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWN 507 (727)
Q Consensus 433 p~~~t~~~ll~a~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 507 (727)
.|..+|..++..+.+ .|..+-....+..|.+.|+..|..+|+.|++.+=+ |.+- |. ..+.
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-------------p~-n~fQ 109 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-------------PR-NFFQ 109 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-------------cc-cHHH
Confidence 344555555555432 34555555566777778888888888887776543 2211 11 1111
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 004856 508 SMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL 553 (727)
Q Consensus 508 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 553 (727)
++..- ...+-+-|++++++|...|+-||..|+..|++.+.+.+.
T Consensus 110 ~~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 110 AEFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11111 123567789999999999999999999999999876654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.012 Score=56.71 Aligned_cols=57 Identities=11% Similarity=0.021 Sum_probs=25.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCC---cchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004856 612 LLSACKMHSETELAELTAEKLISMEPEN---AGNYVLLSNIYAAAGKWNGVAKMRTFLRD 668 (727)
Q Consensus 612 ll~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 668 (727)
+...+...|++++|...|+++++..|++ +.++..++.++...|++++|..+++.+.+
T Consensus 186 LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 186 LGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3333444455555555555554444432 22333334444455555555555544433
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.16 Score=44.55 Aligned_cols=131 Identities=13% Similarity=0.095 Sum_probs=74.5
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHH
Q 004856 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYAS 579 (727)
Q Consensus 500 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 579 (727)
.|.+..--.|..++...|+..+|...|.+...--+.-|......+.++....++...|...++.+.+-..-.-++...-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 34555555566667777777777777777664323335666666677777777777777777766643111112334445
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 004856 580 MVNLLGRAGHMDEARELVKDM-PFKPDARVWGPLLSACKMHSETELAELTAE 630 (727)
Q Consensus 580 li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 630 (727)
+.+.|...|+.++|+..|+.. ..-|+...-.-....+.++|+.+++..-+.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 566777777777777777665 344444332222333455665555544333
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.01 Score=53.61 Aligned_cols=99 Identities=22% Similarity=0.367 Sum_probs=78.5
Q ss_pred HHHHHhccCCCCCHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc-------------
Q 004856 490 GELFDEEKIDSKDIITWNSMISAYAK-----HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNA------------- 551 (727)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~------------- 551 (727)
...|++......+-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.|+..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 44555543336778888888888864 467788888899999999999999999999987542
Q ss_pred ---CCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 004856 552 ---GLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGH 589 (727)
Q Consensus 552 ---g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 589 (727)
.+-+-|+.++++|... |+.||.+++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhccccH
Confidence 2346689999999876 999999999999999977665
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.017 Score=47.82 Aligned_cols=55 Identities=20% Similarity=0.266 Sum_probs=25.6
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 004856 545 LTACVNAGLVEEGRIIFKEMKESYGYEPS--QEHYASMVNLLGRAGHMDEARELVKDM 600 (727)
Q Consensus 545 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~ 600 (727)
..++-..|+.++|+.+|++.... |+... ...+-.+...|...|++++|..++++.
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~ 64 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEA 64 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444555555555555555543 43332 223333444444444444444444443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.22 Score=47.72 Aligned_cols=171 Identities=12% Similarity=0.078 Sum_probs=105.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCCCCCHH-H---HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHH
Q 004856 476 IFISYAKCGCIEMAGELFDEEKIDSKDII-T---WNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD--LITFLGLLTACV 549 (727)
Q Consensus 476 li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~ 549 (727)
....+.+.|++++|.+.|+++....|+.. . .-.++.++.+.+++++|...+++..+. .|+ ...+...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHHh
Confidence 34445667888888888888765555432 1 234556777888888888888888874 443 234444444433
Q ss_pred h--cC---------------C---HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhh-
Q 004856 550 N--AG---------------L---VEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARV- 608 (727)
Q Consensus 550 ~--~g---------------~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~- 608 (727)
. .+ + ..+|...|+.+.++| |+ ..-..+|...+..+. +...
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~-------------S~ya~~A~~rl~~l~---~~la~ 176 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PN-------------SQYTTDATKRLVFLK---DRLAK 176 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cC-------------ChhHHHHHHHHHHHH---HHHHH
Confidence 2 11 1 223445555555442 33 222334443333331 1111
Q ss_pred HH-HHHHHHHHcCCHHHHHHHHHHHHccCCCCc---chHHHHHHHHHhcCChhHHHHHHHHHH
Q 004856 609 WG-PLLSACKMHSETELAELTAEKLISMEPENA---GNYVLLSNIYAAAGKWNGVAKMRTFLR 667 (727)
Q Consensus 609 ~~-~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~ 667 (727)
.. .+..-|.+.|.+.-|..-++.+++.-|+.+ .+...+..+|...|..++|..+.+.+.
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 11 223338889999999999999999777644 566788899999999999999887654
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.65 Score=45.88 Aligned_cols=61 Identities=18% Similarity=0.117 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccCCC---C----CHH-HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004856 471 SVNTAIFISYAKCGCIEMAGELFDEEKIDS---K----DII-TWNSMISAYAKHGDWSQCFKLYTQMKQ 531 (727)
Q Consensus 471 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~----~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~ 531 (727)
..+..+...+.+.|++++|.++|+++.... + ++. .|-..+-++...||+..|.+.+++...
T Consensus 156 ~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 156 ECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344567778999999999999999843211 1 111 122233344556777777777777665
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.035 Score=46.07 Aligned_cols=92 Identities=16% Similarity=0.157 Sum_probs=68.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHH
Q 004856 509 MISAYAKHGDWSQCFKLYTQMKQSDVRPD--LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP-SQEHYASMVNLLG 585 (727)
Q Consensus 509 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 585 (727)
+..++-..|+.++|+.+|++..+.|.... ...+..+.+.+...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45667788999999999999999886654 44677888889999999999999998887532111 2223334456777
Q ss_pred hcCCHHHHHHHHHhC
Q 004856 586 RAGHMDEARELVKDM 600 (727)
Q Consensus 586 ~~g~~~~A~~~~~~~ 600 (727)
..|+.++|++.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 889999988877553
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.46 Score=47.30 Aligned_cols=20 Identities=5% Similarity=0.074 Sum_probs=12.1
Q ss_pred HHHHHHHHHhcCChhHHHHH
Q 004856 643 YVLLSNIYAAAGKWNGVAKM 662 (727)
Q Consensus 643 ~~~l~~~~~~~g~~~~a~~~ 662 (727)
+...+.+|...++..+..+.
T Consensus 417 FkevgeAy~il~d~~kr~r~ 436 (486)
T KOG0550|consen 417 FKEVGEAYTILSDPMKRVRF 436 (486)
T ss_pred HHHHHHHHHHhcCHHHHhhc
Confidence 34556666666666665554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.36 Score=50.63 Aligned_cols=214 Identities=10% Similarity=0.033 Sum_probs=110.4
Q ss_pred HHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCCCCeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChh
Q 004856 256 HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLF 335 (727)
Q Consensus 256 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 335 (727)
++.+.+.|-.|+... +...++-.|++.+|-++|.+ .|.-..|+++|..|+--
T Consensus 623 L~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMF------- 674 (1081)
T KOG1538|consen 623 LEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMF------- 674 (1081)
T ss_pred HHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHH-------
Confidence 345556665565543 34455667888888888754 56666777777766421
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC
Q 004856 336 TAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQ 415 (727)
Q Consensus 336 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 415 (727)
-..+-+...|+.++-+.+.+.--+.. .++.--.+...++...|+.++|..+. ..+|-
T Consensus 675 ---D~aQE~~~~g~~~eKKmL~RKRA~WA--r~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~gW 731 (1081)
T KOG1538|consen 675 ---DYAQEFLGSGDPKEKKMLIRKRADWA--RNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHGW 731 (1081)
T ss_pred ---HHHHHHhhcCChHHHHHHHHHHHHHh--hhcCCcHHHHHHhhcccchhhhhhhh------------------hcccH
Confidence 01122223333333333322211110 00000112333444555555554442 22333
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 004856 416 SLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE 495 (727)
Q Consensus 416 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 495 (727)
.+-++++-+++.. .+..+...+..-+.+...+..|.++|..+-+. ..++++....+++.+|..+-++
T Consensus 732 ~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~ 798 (1081)
T KOG1538|consen 732 VDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEK 798 (1081)
T ss_pred HHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhh
Confidence 3333333333321 22334444444445555566666666655432 2466777778888888888887
Q ss_pred ccCCCCCHHH-----------HHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 004856 496 EKIDSKDIIT-----------WNSMISAYAKHGDWSQCFKLYTQMKQSD 533 (727)
Q Consensus 496 ~~~~~~~~~~-----------~~~li~~~~~~g~~~~A~~~~~~m~~~g 533 (727)
.++..||+.. |..--.+|.+.|+..+|..+++++....
T Consensus 799 hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 799 HPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred CccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 7765555431 2223346777888888888888876543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.72 E-value=1.1 Score=47.73 Aligned_cols=124 Identities=14% Similarity=0.166 Sum_probs=68.2
Q ss_pred CChhhhhhh-ccCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCC----hhhHHHHHHHhcccCChhHHHHHH
Q 004856 182 GFENEKGMI-QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFD----SGTLINLLRSTVELKSLELGRIVH 256 (727)
Q Consensus 182 g~~~~a~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~ 256 (727)
|.+++|+++ -++.++|.. |..+.+.|++-...++++. -|-..| ...|..+-..++....++.|.+.|
T Consensus 748 g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY 819 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYY 819 (1189)
T ss_pred cchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999888 777777764 6666777777776666543 111111 234555555555555555555555
Q ss_pred HHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCCCCeehHHHHHHHHHhcCCchHHHHHHH
Q 004856 257 CVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLM 323 (727)
Q Consensus 257 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 323 (727)
.+.-.. ...+..|.+..++++-+.+-+.+++ |....-.|...+...|.-++|.+.|-
T Consensus 820 ~~~~~~---------e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 820 SYCGDT---------ENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred Hhccch---------HhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHH
Confidence 442111 2234444444555555544444443 33344455566666666666655543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.17 Score=46.89 Aligned_cols=135 Identities=11% Similarity=0.092 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHH-----H
Q 004856 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYA-----S 579 (727)
Q Consensus 505 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~ 579 (727)
.-++++..+.-+|.+.-.+.++++.++..-+.++.-...|.+.-.+.|+.+.|..+|+...+. .-+.+....+ .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhh
Confidence 345677777788899999999999998754457788888999999999999999999987765 3333333333 3
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-CCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCc
Q 004856 580 MVNLLGRAGHMDEARELVKDMP-FKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENA 640 (727)
Q Consensus 580 li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (727)
....|.-.+++.+|...+.+.. ..| ++...|.-.-...-.|+...|++..+.+++..|...
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 3445566778889999998884 233 333344333334567889999999999999988643
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0098 Score=43.91 Aligned_cols=48 Identities=19% Similarity=0.257 Sum_probs=20.8
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 004856 551 AGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM 600 (727)
Q Consensus 551 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 600 (727)
.|++++|+++|+.+... .+-+...+..++.+|.+.|++++|.++++++
T Consensus 4 ~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp TTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred ccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444444444432 1113334444444444444444444444444
|
... |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.013 Score=57.86 Aligned_cols=63 Identities=13% Similarity=0.035 Sum_probs=53.1
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 607 RVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 607 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
.+++.+...+.+.+++..|++..+++++++|+|..+...-+.+|...|+++.|+..|+++.+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 355566666888888889999999999999988888888899999999999999998888776
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0089 Score=60.54 Aligned_cols=62 Identities=11% Similarity=0.063 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHh----hHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004856 574 QEHYASMVNLLGRAGHMDEARELVKDM-PFKPDAR----VWGPLLSACKMHSETELAELTAEKLISM 635 (727)
Q Consensus 574 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~----~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 635 (727)
...++.+..+|.+.|++++|+..|++. .+.|+.. +|..+..+|...|+.++|+..+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555555555555555555555553 4444432 3555555555555555555555555554
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.099 Score=49.96 Aligned_cols=103 Identities=15% Similarity=0.115 Sum_probs=79.5
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHhC-CCCCCHhhHHH
Q 004856 536 PDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG---HMDEARELVKDM-PFKPDARVWGP 611 (727)
Q Consensus 536 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~p~~~~~~~ 611 (727)
-|...|..|..+|...|+.+.|...|....+. -.++...+..+..++.... ...++.++|+++ ..+|+.+.-..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 36888999999999999999999999888864 3345666777776665432 456888888888 66787766666
Q ss_pred HHHH-HHHcCCHHHHHHHHHHHHccCCCCc
Q 004856 612 LLSA-CKMHSETELAELTAEKLISMEPENA 640 (727)
Q Consensus 612 ll~~-~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (727)
++.. +...|++.+|...++++++..|.+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 6655 8999999999999999999887544
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.44 Score=48.00 Aligned_cols=160 Identities=19% Similarity=0.156 Sum_probs=97.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCCCCC--H----HHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 004856 476 IFISYAKCGCIEMAGELFDEEKIDSKD--I----ITWNSMISAYAK---HGDWSQCFKLYTQMKQSDVRPDLITFLGLLT 546 (727)
Q Consensus 476 li~~~~~~g~~~~A~~~~~~~~~~~~~--~----~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 546 (727)
++-.|....+++...++.+.+... |+ . ..-....-++-+ .|+.++|+.++..+....-.+++.||..+.+
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~-p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEAL-PTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhcc-CccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 344566777777777777776642 21 1 111123334555 7888888888888666555777888887777
Q ss_pred HHHh---------cCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHH----HHHHHH---Hh-C---C-C--C
Q 004856 547 ACVN---------AGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMD----EARELV---KD-M---P-F--K 603 (727)
Q Consensus 547 ~~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~----~A~~~~---~~-~---~-~--~ 603 (727)
.|-. ...+++|...|.+.- .+.|+...--.++..+...|... +..++- .. . + . .
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 6542 123667777776554 34566444333444444444321 222222 11 1 1 1 2
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 004856 604 PDARVWGPLLSACKMHSETELAELTAEKLISMEPEN 639 (727)
Q Consensus 604 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 639 (727)
.+--.+.+++.++.-.|+.+.|.+.++++.++.|+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 344456778888999999999999999999998753
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0083 Score=45.07 Aligned_cols=63 Identities=16% Similarity=0.248 Sum_probs=46.0
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHH
Q 004856 582 NLLGRAGHMDEARELVKDM-PFKPD-ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYV 644 (727)
Q Consensus 582 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 644 (727)
..|.+.+++++|.++++.+ ...|+ ...|......+...|++++|...++++++..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 4667788888888888877 45554 345555666688888888888888888888886655443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0049 Score=40.73 Aligned_cols=41 Identities=17% Similarity=0.383 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHH
Q 004856 608 VWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSN 648 (727)
Q Consensus 608 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 648 (727)
+|..+..++...|+.++|+++++++++.+|+|+.++..++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 57778888999999999999999999999999988887764
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.45 E-value=1.2 Score=44.93 Aligned_cols=71 Identities=8% Similarity=0.141 Sum_probs=59.6
Q ss_pred CCCchhhHHHHHHHHHccCChhHHHHHHhcCCCCCcc---hHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCc
Q 004856 61 LHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSL---LYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAE 131 (727)
Q Consensus 61 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~---~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 131 (727)
-+.|..+|-.||.-|...|..+.-++++++|..|-.+ .|..-|++-....++..+..+|.+........|.
T Consensus 38 NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldL 111 (660)
T COG5107 38 NPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDL 111 (660)
T ss_pred CchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhH
Confidence 4677889999999999999999999999999987544 7888898888888999999999988776555443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.38 E-value=1.2 Score=44.12 Aligned_cols=273 Identities=18% Similarity=0.176 Sum_probs=169.3
Q ss_pred cCCHHHHHHHHhcCC---CCChhHHHHHHHH--HHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhcCCChHHH
Q 004856 382 CEDLNCARKIFDSVK---TKTVVSWSSMIKG--YVTHDQSLEALRLFSEMKLEGVEVDFV--TIINILPACVNIGALEHV 454 (727)
Q Consensus 382 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~~~~~~a 454 (727)
.|+-..|.++-.+-. ..|-...-.++.+ -.-.|+++.|.+-|+.|... |... .+..+.-.--+.|..+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 456666666554432 2233333333332 23468888888888888752 3221 223333344567777777
Q ss_pred HHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCCCHHH--HHHHHHHHH---HcCChHHHHHHH
Q 004856 455 KYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI---DSKDIIT--WNSMISAYA---KHGDWSQCFKLY 526 (727)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~--~~~li~~~~---~~g~~~~A~~~~ 526 (727)
.++-...-..- +.-.-...+.+...+..|+++.|+++.+.-.. ..+++.- --.|+.+-+ -..+...|...-
T Consensus 174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 77766555432 22345667778888888999999888886321 1444321 112222211 123456666665
Q ss_pred HHHHHCCCCCChHH-HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC----C
Q 004856 527 TQMKQSDVRPDLIT-FLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM----P 601 (727)
Q Consensus 527 ~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~ 601 (727)
.+..+ +.||.+. -..-..++.+.|++.++-.+++.+.+. .|.+..+.. ..+.|.|+... .-+++. .
T Consensus 253 ~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~l--Y~~ar~gdta~--dRlkRa~~L~s 323 (531)
T COG3898 253 LEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALL--YVRARSGDTAL--DRLKRAKKLES 323 (531)
T ss_pred HHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHH--HHHhcCCCcHH--HHHHHHHHHHh
Confidence 55555 6787543 445567889999999999999999865 566555433 33456665322 222221 3
Q ss_pred CCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhc-CChhHHHHHHHHHHh
Q 004856 602 FKPD-ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAA-GKWNGVAKMRTFLRD 668 (727)
Q Consensus 602 ~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 668 (727)
.+|| ..+-.++..+-...|++..|..-.+.+....| ....|..|+++-... |+-.+++..+-+...
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p-res~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP-RESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc-hhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 4554 44666667777889999999999999999999 578888898886655 888888877765544
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.36 Score=39.78 Aligned_cols=140 Identities=13% Similarity=0.131 Sum_probs=86.9
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 004856 514 AKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEA 593 (727)
Q Consensus 514 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 593 (727)
.-.|..++..++..+.... .+..-++.++--....-+-+...++++.+-+-|.+ ..+|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi--------------s~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI--------------SKCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G--------------GG-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------hhhcchHHH
Confidence 4467888888888887763 35555666665555555555566666655443222 234555555
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 004856 594 RELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLK 672 (727)
Q Consensus 594 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 672 (727)
...+-.++ .+..-...-+.....+|..+.-..++..+.+.+..++....-++.+|.+.|+..++.+++++..++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 55554443 123344556677889999999999999988655558899999999999999999999999999999985
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.077 Score=46.44 Aligned_cols=107 Identities=19% Similarity=0.210 Sum_probs=70.3
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHH
Q 004856 548 CVNAGLVEEGRIIFKEMKESYGYEP--SQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625 (727)
Q Consensus 548 ~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A 625 (727)
....|+.+.+...++++...|.-++ +... ..........++.. -......++..+...|+++.|
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~----~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL----YLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH----HHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCHHHH
Confidence 3456677777777777765542111 1111 11122222223222 112455566678899999999
Q ss_pred HHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004856 626 ELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRD 668 (727)
Q Consensus 626 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 668 (727)
...+++++..+|-+...|..++.+|...|+..+|.++++++..
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998753
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.08 Score=51.12 Aligned_cols=52 Identities=12% Similarity=0.125 Sum_probs=26.0
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 004856 514 AKHGDWSQCFKLYTQMKQSDVRPDL----ITFLGLLTACVNAGLVEEGRIIFKEMKES 567 (727)
Q Consensus 514 ~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 567 (727)
.+.|++++|+..|+.+++. .|+. ..+..+..+|...|++++|...|+.+.+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~ 209 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN 209 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445555555555555542 2332 24445555555555555555555555543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=1.3 Score=42.37 Aligned_cols=54 Identities=13% Similarity=0.058 Sum_probs=29.3
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHH
Q 004856 545 LTACVNAGLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGHMDEARELVK 598 (727)
Q Consensus 545 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~ 598 (727)
..-|.+.|.+..|..-++.+.++|.-.|. .+....++.+|.+.|..++|.++..
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34455566666666666666655432222 3344455566666666666655443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.064 Score=52.85 Aligned_cols=128 Identities=9% Similarity=-0.024 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHh---ccCC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH----CCCC-CChH
Q 004856 472 VNTAIFISYAKCGCIEMAGELFDE---EKID----SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ----SDVR-PDLI 539 (727)
Q Consensus 472 ~~~~li~~~~~~g~~~~A~~~~~~---~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~-p~~~ 539 (727)
.|..|.+.|.-.|+++.|....+. +... ......+..+..++.-.|+++.|.+.|+.-.. .|-+ ....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 344455555556677777665543 1100 11234566677777777888888777776433 2211 1233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHH----hcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 004856 540 TFLGLLTACVNAGLVEEGRIIFKEMKE----SYGYEPSQEHYASMVNLLGRAGHMDEARELVKD 599 (727)
Q Consensus 540 t~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 599 (727)
...+|.+.|.-...++.|+.++.+-.. .....-....+.+|..+|...|..++|+.+.+.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 455667777777777777777654221 101122345677778888888877777766554
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.097 Score=43.90 Aligned_cols=97 Identities=10% Similarity=0.101 Sum_probs=63.2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 004856 470 SSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACV 549 (727)
Q Consensus 470 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 549 (727)
..++.+++.++++.|+++....++++.-+...+.. ...+. .-......|+..+..+++.+|+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~---------~~~~~---------~~~~spl~Pt~~lL~AIv~sf~ 63 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGK---------KKEGD---------YPPSSPLYPTSRLLIAIVHSFG 63 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCc---------cccCc---------cCCCCCCCCCHHHHHHHHHHHH
Confidence 44566677777777777777777665332211100 00000 1122346778888888888888
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 004856 550 NAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLL 584 (727)
Q Consensus 550 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 584 (727)
..|++..|.++.+...+.|+++-+..+|..|+.-.
T Consensus 64 ~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 64 YNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred hcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 88888888888888888888777777887777543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.86 Score=42.39 Aligned_cols=161 Identities=14% Similarity=0.122 Sum_probs=89.6
Q ss_pred HHHhcCCHHHHHHHHHhccCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHHhc-
Q 004856 479 SYAKCGCIEMAGELFDEEKIDSKD----IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD--LITFLGLLTACVNA- 551 (727)
Q Consensus 479 ~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~- 551 (727)
.+...|++++|...|+.+....|+ ....-.++.++-+.|++++|...+++.++. -|+ ...+...+.+.+.-
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHHH
Confidence 355667777777777775433332 234455677778888888888888887764 343 22233333332221
Q ss_pred ------------CCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHH--HHHHHH
Q 004856 552 ------------GLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGP--LLSACK 617 (727)
Q Consensus 552 ------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~--ll~~~~ 617 (727)
+...+|...|+.+..+ |=......+|...+..+. +...-.. +..-|.
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~~~~~li~~----------------yP~S~y~~~A~~~l~~l~---~~la~~e~~ia~~Y~ 152 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIEEFEELIKR----------------YPNSEYAEEAKKRLAELR---NRLAEHELYIARFYY 152 (203)
T ss_dssp HHHHHH-TT---HHHHHHHHHHHHHHHH-----------------TTSTTHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred hCccchhcccChHHHHHHHHHHHHHHHH----------------CcCchHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 1123444444444443 333333444444443331 1111111 233488
Q ss_pred HcCCHHHHHHHHHHHHccCCCCc---chHHHHHHHHHhcCChhHHH
Q 004856 618 MHSETELAELTAEKLISMEPENA---GNYVLLSNIYAAAGKWNGVA 660 (727)
Q Consensus 618 ~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~ 660 (727)
+.|.+..|..-++.+++.-|+.. .+...++.+|.+.|..+.+.
T Consensus 153 ~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 153 KRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp CTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 89999999999999999888754 45567888899999888544
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.81 E-value=2.5 Score=42.87 Aligned_cols=355 Identities=15% Similarity=0.054 Sum_probs=173.1
Q ss_pred HHHHhcccCChhHHHHHHHHHHHhcC----CCChhHHhHHHHHhhcCCChHHHHHHHhcCCCCCeehHHHHHHHHHhcCC
Q 004856 239 LLRSTVELKSLELGRIVHCVAVVSDF----CKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGF 314 (727)
Q Consensus 239 ll~~~~~~~~~~~a~~~~~~~~~~g~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 314 (727)
.+.++...|++.+|+.+++.++..=+ .-+..+|+.++-++++.=-++ +-+.+...=..-|--||..|.+.=+
T Consensus 134 ~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLE----l~e~~s~dl~pdyYemilfY~kki~ 209 (549)
T PF07079_consen 134 EAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLE----LKESMSSDLYPDYYEMILFYLKKIH 209 (549)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHH----HHHhcccccChHHHHHHHHHHHHHH
Confidence 34455556666666666665554433 356667777666665432111 1111111112234455555543211
Q ss_pred chHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCC--ChHHHHHHHHHHHHhCCCCChh-HHHHHHHHHHhcCCHHHHHHH
Q 004856 315 PKESLELLMCMVRSGFRADLFTAIAAVSSISTMK--NIEWGKQMHANVLRNGSDYQVS-VHNSLIDMYCECEDLNCARKI 391 (727)
Q Consensus 315 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~ 391 (727)
.-++ -.=..+-|...-+..++....-.. .+.--.+++......-+.|+-. +...|+.-+.+ +.+++..+
T Consensus 210 ~~d~------~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ 281 (549)
T PF07079_consen 210 AFDQ------RPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHF 281 (549)
T ss_pred HHhh------chHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHH
Confidence 1111 000112333333444443332221 1222233333334444455432 23344444443 44444443
Q ss_pred HhcCC--------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-------HHHHHHh-cCC---ChH
Q 004856 392 FDSVK--------TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTII-------NILPACV-NIG---ALE 452 (727)
Q Consensus 392 ~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-------~ll~a~~-~~~---~~~ 452 (727)
-+.+. ++=+.++..++....+.++..+|-+.+.-+.-- .|+...-. .+-+..+ .-. ++.
T Consensus 282 ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr 359 (549)
T PF07079_consen 282 CEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLR 359 (549)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHH
Confidence 33322 223356777888888888888888877766543 33322111 1111112 111 222
Q ss_pred HHHHHHHHHHHhCCCchHhHH--HHHHHHHHhcCC-HHHHHHHHHhccCCCC-CHHHHHHHHH----HHHH---cCChHH
Q 004856 453 HVKYLHGYSMKLGLNSLSSVN--TAIFISYAKCGC-IEMAGELFDEEKIDSK-DIITWNSMIS----AYAK---HGDWSQ 521 (727)
Q Consensus 453 ~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~-~~~A~~~~~~~~~~~~-~~~~~~~li~----~~~~---~g~~~~ 521 (727)
.-..+|..+....+....-+. .--..-+-+.|. -++|.++++.+....+ |..+-|.+.. +|.+ ...+.+
T Consensus 360 ~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~r 439 (549)
T PF07079_consen 360 DYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPR 439 (549)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 233344444444433221111 111223445555 7788888887554333 5444443322 2222 123444
Q ss_pred HHHHHHHHHHCCCCCC----hHHHHHHHHH--HHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 004856 522 CFKLYTQMKQSDVRPD----LITFLGLLTA--CVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARE 595 (727)
Q Consensus 522 A~~~~~~m~~~g~~p~----~~t~~~ll~~--~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 595 (727)
-+.+-+-..+.|+.|- ...-+.|..| +...|++.++.-+-.-+. .+.|++.+|..+.-.+....++++|.+
T Consensus 440 LlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~ 516 (549)
T PF07079_consen 440 LLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWE 516 (549)
T ss_pred HHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 4555555667777773 2333444333 455688888776555444 478888888888888888888899999
Q ss_pred HHHhCCCCCCHhhHHHH
Q 004856 596 LVKDMPFKPDARVWGPL 612 (727)
Q Consensus 596 ~~~~~~~~p~~~~~~~l 612 (727)
++.+.+ |+...+++-
T Consensus 517 ~l~~LP--~n~~~~dsk 531 (549)
T PF07079_consen 517 YLQKLP--PNERMRDSK 531 (549)
T ss_pred HHHhCC--CchhhHHHH
Confidence 888874 566566553
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.017 Score=44.09 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=9.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH
Q 004856 643 YVLLSNIYAAAGKWNGVAKMRTF 665 (727)
Q Consensus 643 ~~~l~~~~~~~g~~~~a~~~~~~ 665 (727)
+..++.+|...|++++|.+++++
T Consensus 49 ~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 49 LNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444444444444444444443
|
... |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.018 Score=43.86 Aligned_cols=61 Identities=20% Similarity=0.220 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-----CCC---CC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 004856 574 QEHYASMVNLLGRAGHMDEARELVKDM-----PFK---PD-ARVWGPLLSACKMHSETELAELTAEKLIS 634 (727)
Q Consensus 574 ~~~~~~li~~~~~~g~~~~A~~~~~~~-----~~~---p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 634 (727)
..+|+.+...|.+.|++++|++.+++. ... |+ ..++..+...+...|++++|++.++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 357899999999999999999999877 122 22 34677777779999999999999998763
|
... |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.21 Score=51.07 Aligned_cols=158 Identities=11% Similarity=0.128 Sum_probs=98.8
Q ss_pred HHH--HHHHHHHHHc-----CChHHHHHHHHHHHH-CCCCCC-hHHHHHHHHHHHhc---------CCHHHHHHHHHHhH
Q 004856 504 ITW--NSMISAYAKH-----GDWSQCFKLYTQMKQ-SDVRPD-LITFLGLLTACVNA---------GLVEEGRIIFKEMK 565 (727)
Q Consensus 504 ~~~--~~li~~~~~~-----g~~~~A~~~~~~m~~-~g~~p~-~~t~~~ll~~~~~~---------g~~~~a~~~~~~~~ 565 (727)
..| ..++.+.... ...+.|+.+|.+... ..+.|+ ...|..+..++... ....+|.++-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5555555442 245678888998882 225675 55676666655432 23445666666666
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHh-hHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchH
Q 004856 566 ESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPDAR-VWGPLLSACKMHSETELAELTAEKLISMEPENAGNY 643 (727)
Q Consensus 566 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 643 (727)
+. -+-|......+..++.-.|+++.|..+|++. ...||.. +|......+...|+.++|.+..+++++++|....+-
T Consensus 332 el--d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 DI--TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred hc--CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 42 2234556666677677777788888888887 5667654 455555557778888888888888888888654433
Q ss_pred H--HHHHHHHhcCChhHHHHHHH
Q 004856 644 V--LLSNIYAAAGKWNGVAKMRT 664 (727)
Q Consensus 644 ~--~l~~~~~~~g~~~~a~~~~~ 664 (727)
. ..++.|...+ .++|+.++-
T Consensus 410 ~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 410 VIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHcCCc-hhhhHHHHh
Confidence 3 3344566655 456666553
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.15 Score=44.59 Aligned_cols=70 Identities=21% Similarity=0.369 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHH----hcCCCCChhH
Q 004856 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKE----SYGYEPSQEH 576 (727)
Q Consensus 505 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 576 (727)
....++..+...|++++|+.+.+++... .| |...|..++.++...|+..+|.+.|+.+.. ..|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 4445666677788888888888888874 45 677788888888888888888888876643 3477777654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.28 Score=47.71 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=23.4
Q ss_pred HHhcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhcCCChHHHHH
Q 004856 410 YVTHDQSLEALRLFSEMKLEG--VEVDFVTIINILPACVNIGALEHVKY 456 (727)
Q Consensus 410 ~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~a~~~~~~~~~a~~ 456 (727)
+....+.++|+..+.+-...- ..---.+|..+..+.++.|.++++..
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 345566677777666655421 11112344445555555555555444
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.087 Score=53.63 Aligned_cols=61 Identities=13% Similarity=0.121 Sum_probs=52.8
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHhC
Q 004856 537 DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQ----EHYASMVNLLGRAGHMDEARELVKDM 600 (727)
Q Consensus 537 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~ 600 (727)
+...++.+..+|.+.|++++|+..|++..+ +.|+. ..|..+..+|...|+.++|++.++++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 467899999999999999999999999884 46764 35888999999999999999999887
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.44 E-value=1.3 Score=41.19 Aligned_cols=138 Identities=16% Similarity=0.208 Sum_probs=75.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChh-HHHHHHHH
Q 004856 509 MISAYAKHGDWSQCFKLYTQMKQSDVRPD----LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE-HYASMVNL 583 (727)
Q Consensus 509 li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~ 583 (727)
....+...|++.+|.+.|+++.... |+ ......++.++.+.|+++.|...++...+.+.-.|... .+-.+...
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~--P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~ 88 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRY--PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLS 88 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH
Confidence 4455667788888888888877642 32 33455667777788888888888888777654444321 11111111
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcch-----------------HHHH
Q 004856 584 LGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGN-----------------YVLL 646 (727)
Q Consensus 584 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----------------~~~l 646 (727)
+... .. ..+ ......+....|...++.+++.-|+++-+ -..+
T Consensus 89 ~~~~--~~---~~~----------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~i 147 (203)
T PF13525_consen 89 YYKQ--IP---GIL----------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYI 147 (203)
T ss_dssp HHHH--HH---HHH-----------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh--Cc---cch----------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1110 00 000 00122233455666666666666654322 2245
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 004856 647 SNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 647 ~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
+..|.+.|.+..|...++.+.+.
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHH
Confidence 67899999999999999988776
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.2 Score=49.85 Aligned_cols=95 Identities=16% Similarity=0.128 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHh
Q 004856 575 EHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAA 652 (727)
Q Consensus 575 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 652 (727)
.++..|.-+|.+.+++.+|++..++. ...| |.-..---..+|...|+++.|+..|+++++++|.|..+-..|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 35667788888999999999888876 4444 455555566779999999999999999999999999888888887776
Q ss_pred cCChhHH-HHHHHHHHhC
Q 004856 653 AGKWNGV-AKMRTFLRDR 669 (727)
Q Consensus 653 ~g~~~~a-~~~~~~m~~~ 669 (727)
....++. .++|..|-..
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 6666554 6778888654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.31 E-value=5.4 Score=43.30 Aligned_cols=326 Identities=10% Similarity=0.063 Sum_probs=172.7
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHh-CC-CCChhHHHHHHHHH
Q 004856 302 WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN-GS-DYQVSVHNSLIDMY 379 (727)
Q Consensus 302 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~-~~~~~~~~~li~~~ 379 (727)
-..+|.-+...+.+..|+++-..+...-..- ...|........+..+. .-..+++.+.+. +. -.+...|..+..-.
T Consensus 440 ~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~-~d~~vld~I~~kls~~~~~~iSy~~iA~~A 517 (829)
T KOG2280|consen 440 EEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDK-MDEEVLDKIDEKLSAKLTPGISYAAIARRA 517 (829)
T ss_pred hhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCc-cchHHHHHHHHHhcccCCCceeHHHHHHHH
Confidence 3456666777777888887776664321111 34444444444443221 112222222221 11 12333466666666
Q ss_pred HhcCCHHHHHHHHhcCCCC--------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCh
Q 004856 380 CECEDLNCARKIFDSVKTK--------TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451 (727)
Q Consensus 380 ~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 451 (727)
..+|+.+.|..+++.=+.. +..-+..-+.-..+.|+.+-...++-.|..+ .+...|...+ .+.
T Consensus 518 y~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~ 588 (829)
T KOG2280|consen 518 YQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQ 588 (829)
T ss_pred HhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHH------Hhc
Confidence 6788888888887653322 1112333444455566666666655555442 1111111111 112
Q ss_pred HHHHHHHHHHHH-hCCCchHhHHHHHHHHHHhcCCHHHHHHHHHh--------ccCCCCCHHHHHHHHHHHHHcCCh---
Q 004856 452 EHVKYLHGYSMK-LGLNSLSSVNTAIFISYAKCGCIEMAGELFDE--------EKIDSKDIITWNSMISAYAKHGDW--- 519 (727)
Q Consensus 452 ~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~--- 519 (727)
..|..++....+ .+-. .+-+.| ..++...+...|.. +.+..|+. .....++.+....
T Consensus 589 p~a~~lY~~~~r~~~~~-------~l~d~y-~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e 657 (829)
T KOG2280|consen 589 PLALSLYRQFMRHQDRA-------TLYDFY-NQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFE 657 (829)
T ss_pred hhhhHHHHHHHHhhchh-------hhhhhh-hcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhH
Confidence 223333333222 1110 011111 12222222222211 11112222 2233344443331
Q ss_pred HHH-------HHHHHHHHH-CCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHH
Q 004856 520 SQC-------FKLYTQMKQ-SDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMD 591 (727)
Q Consensus 520 ~~A-------~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 591 (727)
++| +.+.+.+.. .|..-...|.+--+.-+...|+..+|.++-++.+ .||...|..=+.+++..++++
T Consensus 658 ~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kwe 732 (829)
T KOG2280|consen 658 AKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWE 732 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHH
Confidence 111 122222221 2223334455566677788899999988876654 588889988899999999999
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 004856 592 EARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTF 665 (727)
Q Consensus 592 ~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 665 (727)
+-+++-+... .+.-|.-++.+|.+.|+.++|..++-+.-.+. -...+|.+.|++.+|.+.--+
T Consensus 733 eLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~--------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 733 ELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ--------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCChH--------HHHHHHHHhccHHHHHHHHHH
Confidence 9888887763 36678889999999999999998877643221 567789999999998876543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.30 E-value=2.7 Score=39.71 Aligned_cols=191 Identities=20% Similarity=0.177 Sum_probs=83.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHH-HHH
Q 004856 474 TAIFISYAKCGCIEMAGELFDEEKI---DSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLT-ACV 549 (727)
Q Consensus 474 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-~~~ 549 (727)
......+...+.+..+...+..... .......+......+...+++..+.+.+.........+ ......... ++.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 141 (291)
T COG0457 63 LLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALY 141 (291)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHH
Confidence 3333444444444444444444321 12233344444444444455555555555554422111 111111122 445
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--HhhHHHHHHHHHHcCCH
Q 004856 550 NAGLVEEGRIIFKEMKESYGYEP----SQEHYASMVNLLGRAGHMDEARELVKDM-PFKPD--ARVWGPLLSACKMHSET 622 (727)
Q Consensus 550 ~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~~g~~ 622 (727)
..|+++.+...+..... ..| ....+......+...++.++|...+.+. ...|+ ...+..+...+...++.
T Consensus 142 ~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 142 ELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 55555555555555432 111 1222223333344455555555555544 22222 33444444445555555
Q ss_pred HHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004856 623 ELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRD 668 (727)
Q Consensus 623 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 668 (727)
+.|...+..+....|.....+..+...+...|.++++...+.+...
T Consensus 219 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 219 EEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555554334444444444444455555555544433
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.18 Score=47.28 Aligned_cols=111 Identities=17% Similarity=0.255 Sum_probs=84.3
Q ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC-----------
Q 004856 489 AGELFDEEKIDSKDIITWNSMISAYAKH-----GDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAG----------- 552 (727)
Q Consensus 489 A~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g----------- 552 (727)
.+..|......+.|-.+|-+++..+..+ +.++-....++.|.+.|+.-|..+|..|++.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 3455555555467888888888887643 567777788999999999999999999999876532
Q ss_pred -----CHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH-HHHHHHHHhC
Q 004856 553 -----LVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHM-DEARELVKDM 600 (727)
Q Consensus 553 -----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~ 600 (727)
+-+-++.++++|... |+.||.++-..|++++++.|-. .+..++.--|
T Consensus 133 ~HYP~QQ~C~I~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWH-GVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hhCchhhhHHHHHHHHHHHc-CCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 224478999999877 9999999999999999988864 3344444334
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.21 Score=40.96 Aligned_cols=88 Identities=19% Similarity=0.223 Sum_probs=52.7
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CC---cchHHHHHHHHHhcCCh
Q 004856 583 LLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEP-EN---AGNYVLLSNIYAAAGKW 656 (727)
Q Consensus 583 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p-~~---~~~~~~l~~~~~~~g~~ 656 (727)
++...|+++.|++.|.+. .+-| ....||.-..+++-+|+.++|..-+++++++.- .. ..+|..-+.+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 344556666666666555 2222 445666666666777777777777777766532 21 13455566667777777
Q ss_pred hHHHHHHHHHHhCC
Q 004856 657 NGVAKMRTFLRDRG 670 (727)
Q Consensus 657 ~~a~~~~~~m~~~~ 670 (727)
+.|+.-|....+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 77777666665554
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.12 E-value=4.2 Score=41.14 Aligned_cols=161 Identities=15% Similarity=0.096 Sum_probs=102.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCC--CC-ChHHHHHHHHHHHh---cCCHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 004856 508 SMISAYAKHGDWSQCFKLYTQMKQSDV--RP-DLITFLGLLTACVN---AGLVEEGRIIFKEMKESYGYEPSQEHYASMV 581 (727)
Q Consensus 508 ~li~~~~~~g~~~~A~~~~~~m~~~g~--~p-~~~t~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 581 (727)
.++-+|....+++..+++.+.|...-- .+ ....-....-|+.+ .|+.++|++++..+... .-.+++++|..+.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~gL~G 224 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLGLLG 224 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHHHHH
Confidence 556679999999999999999987310 11 12222234556666 89999999999996555 5667788888887
Q ss_pred HHHH----h-----cCCHHHHHHHHHhC-CCCCCHhh---HHHHHHHHHHcC-CHHHHHHHH----HHHHcc---C-CCC
Q 004856 582 NLLG----R-----AGHMDEARELVKDM-PFKPDARV---WGPLLSACKMHS-ETELAELTA----EKLISM---E-PEN 639 (727)
Q Consensus 582 ~~~~----~-----~g~~~~A~~~~~~~-~~~p~~~~---~~~ll~~~~~~g-~~~~A~~~~----~~~~~~---~-p~~ 639 (727)
..|- . ...+++|.+.+.+. ..+|+... +-+|+....... .-.+..++. ..+.+. + -.+
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~d 304 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQD 304 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccccc
Confidence 6654 2 22478899888887 55665432 222322222111 111222222 111111 1 234
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 640 AGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 640 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
...+..++.++.-.|+.++|.+..++|...
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 556668889999999999999999998766
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.31 Score=40.88 Aligned_cols=78 Identities=19% Similarity=0.243 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhH--------------HhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC----
Q 004856 539 ITFLGLLTACVNAGLVEEGRIIFKEMK--------------ESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM---- 600 (727)
Q Consensus 539 ~t~~~ll~~~~~~g~~~~a~~~~~~~~--------------~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---- 600 (727)
.++..++.++++.|+++....+++..- ......|+..+..+++.+|+..|++..|.++++..
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 344455555555555555444443322 11145567777777777777777777777777655
Q ss_pred CCCCCHhhHHHHHHHH
Q 004856 601 PFKPDARVWGPLLSAC 616 (727)
Q Consensus 601 ~~~p~~~~~~~ll~~~ 616 (727)
+++-+...|..|+.-+
T Consensus 83 ~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 83 PIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 4444566777777653
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.07 E-value=1.3 Score=45.54 Aligned_cols=145 Identities=12% Similarity=0.003 Sum_probs=98.9
Q ss_pred CHHHHHHHHHhcc---CCCCC-HHHHHHHHHHHHH---------cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 004856 485 CIEMAGELFDEEK---IDSKD-IITWNSMISAYAK---------HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNA 551 (727)
Q Consensus 485 ~~~~A~~~~~~~~---~~~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 551 (727)
..+.|..+|.+.. ...|+ ...|..+..++.. .....+|.++.++..+.+ +-|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 4678888999855 44554 3445444443322 223557788888888854 34788888888888888
Q ss_pred CCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHh-CCCCCCHhh---HHHHHHHHHHcCCHHHHH
Q 004856 552 GLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGHMDEARELVKD-MPFKPDARV---WGPLLSACKMHSETELAE 626 (727)
Q Consensus 552 g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p~~~~---~~~ll~~~~~~g~~~~A~ 626 (727)
++.+.|...|++.. .+.|| ...|......+.-+|+.++|.+.+++ +...|.... ....+..|.. ...+.|+
T Consensus 352 ~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhH
Confidence 89999999999988 46777 44666666667779999999999999 477775432 2222334444 4577788
Q ss_pred HHHHHHHc
Q 004856 627 LTAEKLIS 634 (727)
Q Consensus 627 ~~~~~~~~ 634 (727)
.+|-+-.+
T Consensus 428 ~~~~~~~~ 435 (458)
T PRK11906 428 KLYYKETE 435 (458)
T ss_pred HHHhhccc
Confidence 87765443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.99 E-value=1.5 Score=46.65 Aligned_cols=159 Identities=14% Similarity=0.117 Sum_probs=104.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCC-CCCCh-----HHHHHHHHHHHh----cCCHHHHHHHHHHhHHhcCCCCChhHH
Q 004856 508 SMISAYAKHGDWSQCFKLYTQMKQSD-VRPDL-----ITFLGLLTACVN----AGLVEEGRIIFKEMKESYGYEPSQEHY 577 (727)
Q Consensus 508 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~ 577 (727)
.++....-.|+-+.+++++.+..+.+ +.-.. ..|...+..++. ....+.+.++++.+.++ -|+...|
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~lf 269 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSALF 269 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHHH
Confidence 45566666788888888887766532 11111 123333333332 45678899999999876 4665544
Q ss_pred H-HHHHHHHhcCCHHHHHHHHHhCC-CC-----CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHH-HHHH
Q 004856 578 A-SMVNLLGRAGHMDEARELVKDMP-FK-----PDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVL-LSNI 649 (727)
Q Consensus 578 ~-~li~~~~~~g~~~~A~~~~~~~~-~~-----p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~-l~~~ 649 (727)
. .-.+.+...|++++|.+.|+++- .+ -....+--+...+....++++|...+.++.+...-+...|.. .+-+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 3 33466777899999999999762 11 122333444555777889999999999999877665566654 4445
Q ss_pred HHhcCCh-------hHHHHHHHHHHhC
Q 004856 650 YAAAGKW-------NGVAKMRTFLRDR 669 (727)
Q Consensus 650 ~~~~g~~-------~~a~~~~~~m~~~ 669 (727)
+...|+. ++|.++++++...
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 7777888 8888888877654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.94 E-value=1.3 Score=40.05 Aligned_cols=185 Identities=14% Similarity=0.183 Sum_probs=113.5
Q ss_pred HHhcCCHHHHHHHHHhccCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHH
Q 004856 480 YAKCGCIEMAGELFDEEKIDSKD-IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD-LITFLGLLTACVNAGLVEEG 557 (727)
Q Consensus 480 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a 557 (727)
|-..|-.+-|..-|.+.....|+ ...||-+.--+...|+++.|.+.|+...+ +.|. ..+...-.-++.-.|++.-|
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LA 152 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLA 152 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhh
Confidence 44556666666666664444565 46788787778899999999999999988 4553 33433333445567899888
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 004856 558 RIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEP 637 (727)
Q Consensus 558 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 637 (727)
.+-+...-+...-+|=...|--++ .+.-++.+|..-+.+--...|..-|...+-.+.-- +.. .+.+++++.+...
T Consensus 153 q~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLg-kiS-~e~l~~~~~a~a~ 227 (297)
T COG4785 153 QDDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLG-KIS-EETLMERLKADAT 227 (297)
T ss_pred HHHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHh-hcc-HHHHHHHHHhhcc
Confidence 877766654312223233333333 34556777765443322234556676666553221 111 1234444444333
Q ss_pred CC-------cchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004856 638 EN-------AGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGL 671 (727)
Q Consensus 638 ~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 671 (727)
++ ..+|..|+.-|...|+.++|..+|+......+
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 22 46889999999999999999999997655543
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.19 Score=44.65 Aligned_cols=89 Identities=15% Similarity=0.110 Sum_probs=63.5
Q ss_pred HHHHhcCCHHHHHHHHHhC-C-CCC-----CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcC
Q 004856 582 NLLGRAGHMDEARELVKDM-P-FKP-----DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAG 654 (727)
Q Consensus 582 ~~~~~~g~~~~A~~~~~~~-~-~~p-----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 654 (727)
+-+.+.|++++|..-+..+ . +.+ ..+.|..-..+..+.+.++.|+.-..++++++|....+....+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 3345566666666665554 1 111 12233333445778888999999999999999988888888888999999
Q ss_pred ChhHHHHHHHHHHhCC
Q 004856 655 KWNGVAKMRTFLRDRG 670 (727)
Q Consensus 655 ~~~~a~~~~~~m~~~~ 670 (727)
.+++|++-++++.+..
T Consensus 183 k~eealeDyKki~E~d 198 (271)
T KOG4234|consen 183 KYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999999998887763
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.73 Score=39.15 Aligned_cols=55 Identities=20% Similarity=0.301 Sum_probs=29.5
Q ss_pred hcCCHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCc
Q 004856 586 RAGHMDEARELVKDM----PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENA 640 (727)
Q Consensus 586 ~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (727)
+.|++++|.+.|+.+ +..| ....-..++.++.+.+++++|...+++.+++.|.++
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 445555555555544 1111 222334455556666666666666666666666554
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.45 E-value=5.9 Score=39.53 Aligned_cols=286 Identities=12% Similarity=0.082 Sum_probs=145.7
Q ss_pred HHHHHHHHHhc--CCchHHHHHHHHHHHcCCCCChhhHHHHHHHhh--cCCChHHHHHHHHHHHHhCCCCChhH--HHHH
Q 004856 302 WNIMISAYYQS--GFPKESLELLMCMVRSGFRADLFTAIAAVSSIS--TMKNIEWGKQMHANVLRNGSDYQVSV--HNSL 375 (727)
Q Consensus 302 ~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~l 375 (727)
|.+|-.++... |+-..|.++-.+-.+. +..|...+..++.+-. -.|+.+.+++-|+-|... |.... ...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 44444444332 3444444443333211 3344455555554433 346666666666666531 11111 1222
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHhc--
Q 004856 376 IDMYCECEDLNCARKIFDSVKTK---TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG-VEVDFV--TIINILPACVN-- 447 (727)
Q Consensus 376 i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~a~~~-- 447 (727)
.-.--+.|+.+.|...-+..-.. -.-.|.+.+...+..|+++.|+++++.-.... +.++.. .-..++.+-..
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 22334567777777666554432 23467778888888888888888887765532 344432 12223332211
Q ss_pred -CCChHHHHHHHHHHHHhCCCchHhH-HHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 004856 448 -IGALEHVKYLHGYSMKLGLNSLSSV-NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525 (727)
Q Consensus 448 -~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 525 (727)
..+...|+..-....+ +.|+..- -..-...|.+.|++.++-.+++.+-+..|....|...+ +.+.|+. ++.-
T Consensus 241 ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~--~ar~gdt--a~dR 314 (531)
T COG3898 241 LDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYV--RARSGDT--ALDR 314 (531)
T ss_pred hcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHH--HhcCCCc--HHHH
Confidence 1233444444333333 2222211 11223456777777777777777665556555543322 2344443 2222
Q ss_pred HHHHHH-CCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc-CCHHHHHHHHHhC
Q 004856 526 YTQMKQ-SDVRPD-LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA-GHMDEARELVKDM 600 (727)
Q Consensus 526 ~~~m~~-~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~ 600 (727)
+++... ..++|| ......+..+-...|++..|..--+... ...|....|..|.+.-... |+-.++..++.+.
T Consensus 315 lkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 315 LKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 222221 114553 4555566666667777777666555554 3467777777666665443 7777777777665
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.36 E-value=6.8 Score=39.85 Aligned_cols=132 Identities=13% Similarity=0.194 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHH-HHH
Q 004856 503 IITWNSMISAYAKHGDWSQCFKLYTQMKQSD-VRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHY-ASM 580 (727)
Q Consensus 503 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~l 580 (727)
...|...+..-.+..-.+.|..+|-+..+.| +.++...+++++.-++. |+...|..+|+.=... -||...| ...
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~---f~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK---FPDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh---CCCchHHHHHH
Confidence 4566667777666666777777777777777 45566677777766554 6667777777665543 2333332 345
Q ss_pred HHHHHhcCCHHHHHHHHHhC--CCCCC--HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004856 581 VNLLGRAGHMDEARELVKDM--PFKPD--ARVWGPLLSACKMHSETELAELTAEKLISMEPE 638 (727)
Q Consensus 581 i~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 638 (727)
+..+.+.++-+.|..+|+.. .+..+ ...|..++.--..-|+...+..+-+++.++-|+
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 56666777777777777755 12222 346777777777777777777777777777764
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.28 E-value=5.1 Score=38.54 Aligned_cols=140 Identities=19% Similarity=0.197 Sum_probs=62.7
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH
Q 004856 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE 592 (727)
Q Consensus 513 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 592 (727)
....|++.+|..+|+...... +-+...-..+..+|...|+.+.|..++..+-.. --.........-+..+.+.....+
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcCCC
Confidence 344556666666666555532 113344445555666666666666665544322 001111111222334444444443
Q ss_pred HHHHHHhCCCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccC--CCCcchHHHHHHHHHhcC
Q 004856 593 ARELVKDMPFKP-DARVWGPLLSACKMHSETELAELTAEKLISME--PENAGNYVLLSNIYAAAG 654 (727)
Q Consensus 593 A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g 654 (727)
...+-.+..-.| |...-..+...+...|+.+.|...+-.+++.+ -.|..+-..++.++...|
T Consensus 222 ~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 334444433344 22333333444555555555555444444322 234444455555555555
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.25 E-value=1.5 Score=46.60 Aligned_cols=116 Identities=17% Similarity=0.150 Sum_probs=78.7
Q ss_pred cCCHHHHHHHHHhccCCCCCHHHHHHHH-HHHHHcCChHHHHHHHHHHHHCC--CC-CChHHHHHHHHHHHhcCCHHHHH
Q 004856 483 CGCIEMAGELFDEEKIDSKDIITWNSMI-SAYAKHGDWSQCFKLYTQMKQSD--VR-PDLITFLGLLTACVNAGLVEEGR 558 (727)
Q Consensus 483 ~g~~~~A~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g--~~-p~~~t~~~ll~~~~~~g~~~~a~ 558 (727)
....+.|.++++.+....|+...|.-.- +.+...|+.++|++.|++..... .+ .....+--+...+.-..+|++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 4577889999998887678887776553 45667899999999999766411 11 13445666677788889999999
Q ss_pred HHHHHhHHhcCCCCChhHHHHHH-HHHHhcCCH-------HHHHHHHHhC
Q 004856 559 IIFKEMKESYGYEPSQEHYASMV-NLLGRAGHM-------DEARELVKDM 600 (727)
Q Consensus 559 ~~~~~~~~~~~~~p~~~~~~~li-~~~~~~g~~-------~~A~~~~~~~ 600 (727)
..|..+.+.... +..+|.-+. -++...|+. ++|.++|.+.
T Consensus 326 ~~f~~L~~~s~W--Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 326 EYFLRLLKESKW--SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHHhcccc--HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 999998865222 233333322 334456666 7788888776
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.25 E-value=4.9 Score=37.82 Aligned_cols=199 Identities=20% Similarity=0.185 Sum_probs=131.5
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHh-CCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCH-HHHHHHHH-H
Q 004856 436 VTIINILPACVNIGALEHVKYLHGYSMKL-GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI-ITWNSMIS-A 512 (727)
Q Consensus 436 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~li~-~ 512 (727)
..+......+...+.+..+...+...... ........+......+...+.+..+...+.......++. ........ .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 34444444555555555555554444432 233444555555666667777788888887755332322 22222333 6
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCC----ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhc
Q 004856 513 YAKHGDWSQCFKLYTQMKQSDVRP----DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP-SQEHYASMVNLLGRA 587 (727)
Q Consensus 513 ~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~ 587 (727)
+...|+++.|...+.+... ..| ....+......+...++.+.+...+...... ... ....+..+...+...
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHc
Confidence 8889999999999999865 333 2344445555567788999999999988854 233 366788888888899
Q ss_pred CCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004856 588 GHMDEARELVKDM-PFKPD-ARVWGPLLSACKMHSETELAELTAEKLISMEPE 638 (727)
Q Consensus 588 g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 638 (727)
+++++|...+... ...|+ ...+..+...+...++.+.+...+.+.....|.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999999998887 44454 345555555555777899999999999998885
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.02 E-value=1.8 Score=36.81 Aligned_cols=53 Identities=15% Similarity=0.144 Sum_probs=28.9
Q ss_pred HHcCChHHHHHHHHHHHHCCCCC---ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 004856 514 AKHGDWSQCFKLYTQMKQSDVRP---DLITFLGLLTACVNAGLVEEGRIIFKEMKES 567 (727)
Q Consensus 514 ~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 567 (727)
.+.|++++|.+.|+.+...- +. ....-..|+.++.+.+++++|...+++.++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 44556666666666665531 11 1234445556666666666666666666544
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.61 Score=45.01 Aligned_cols=159 Identities=11% Similarity=0.040 Sum_probs=117.0
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHH----HHHHHHhcCCH
Q 004856 515 KHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYAS----MVNLLGRAGHM 590 (727)
Q Consensus 515 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~----li~~~~~~g~~ 590 (727)
-+|+..+|-..++++++. .+.|...+.-.=.+|...|+...-...++++... ..|+...|.- +.-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478888888899999875 4568888888888999999999999999888754 4566544443 34455689999
Q ss_pred HHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCC----CcchHHHHHHHHHhcCChhHHHHHHH
Q 004856 591 DEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPE----NAGNYVLLSNIYAAAGKWNGVAKMRT 664 (727)
Q Consensus 591 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~ 664 (727)
++|++.-++. ++.| |.-.-.++...+...|+..++.+...+-...-.. -...|-+.+-.+...+.++.|.++++
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999887 5555 4345555666688899999999988876543221 13345577777888899999999998
Q ss_pred HHHhCCCccCCc
Q 004856 665 FLRDRGLKKTPG 676 (727)
Q Consensus 665 ~m~~~~~~~~~~ 676 (727)
+-.-..+.++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 765544545444
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.55 Score=40.90 Aligned_cols=86 Identities=12% Similarity=0.031 Sum_probs=51.3
Q ss_pred HHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHH
Q 004856 480 YAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558 (727)
Q Consensus 480 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 558 (727)
+...|++++|..+|.-+....| +..-|..|..++-..+++++|+..|......+ .-|+..+-....++...|+.+.|+
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHH
Confidence 3456666666666665332222 44455666666666677777777766655533 224444555666666677777777
Q ss_pred HHHHHhHH
Q 004856 559 IIFKEMKE 566 (727)
Q Consensus 559 ~~~~~~~~ 566 (727)
..|+....
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 77666664
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.74 Score=43.59 Aligned_cols=93 Identities=20% Similarity=0.338 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHH
Q 004856 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD----LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS-QEHYAS 579 (727)
Q Consensus 505 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 579 (727)
.|+.-+.. .+.|++.+|...|...++.. |+ ...+..|..++...|++++|..+|..+.+.++-.|- ++.+--
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 45544433 34455677777776666642 32 234556666667777777777777666665443333 244555
Q ss_pred HHHHHHhcCCHHHHHHHHHhC
Q 004856 580 MVNLLGRAGHMDEARELVKDM 600 (727)
Q Consensus 580 li~~~~~~g~~~~A~~~~~~~ 600 (727)
|.....+.|+.++|...+++.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHH
Confidence 555555555555555555544
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.80 E-value=9.6 Score=39.58 Aligned_cols=58 Identities=10% Similarity=0.147 Sum_probs=41.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 004856 507 NSMISAYAKHGDWSQCFKLYTQMKQSDVRP--DLITFLGLLTACVNAGLVEEGRIIFKEMK 565 (727)
Q Consensus 507 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 565 (727)
..+..++.+.|+.++|++.+++|.+.. ++ +......|+.++...+.+.++..++.+..
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 345666677888888888888887642 22 23466778888888888888888887764
|
The molecular function of this protein is uncertain. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.75 E-value=2.9 Score=36.07 Aligned_cols=41 Identities=17% Similarity=0.112 Sum_probs=19.9
Q ss_pred HHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcC
Q 004856 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKL 281 (727)
Q Consensus 240 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 281 (727)
+..+...+.......+++.+++.+ ..+....|.++..|++.
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 333333344444444555544444 24455556666666544
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.71 E-value=9.3 Score=39.13 Aligned_cols=149 Identities=11% Similarity=0.038 Sum_probs=76.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC--hhH
Q 004856 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP---DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS--QEH 576 (727)
Q Consensus 502 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~ 576 (727)
...+|..++..+.+.|+++.|...+.++...+..+ .+.....-+...-..|+..+|...++..... .+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 44567777777888888888888777776643211 2233333445556667777777777776652 11111 111
Q ss_pred HHHHHHHHHhcCCHHHHHHH-HHhCCCCCCHhhHHHHHHHHHHc------CCHHHHHHHHHHHHccCCCCcchHHHHHHH
Q 004856 577 YASMVNLLGRAGHMDEAREL-VKDMPFKPDARVWGPLLSACKMH------SETELAELTAEKLISMEPENAGNYVLLSNI 649 (727)
Q Consensus 577 ~~~li~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~ll~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 649 (727)
...+...+.. ..+..... ........-...+..+...+... ++.+++...|+++.++.|....++..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 00000000011222222223333 788999999999999999888888877766
Q ss_pred HHhc
Q 004856 650 YAAA 653 (727)
Q Consensus 650 ~~~~ 653 (727)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 5544
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.68 E-value=4.2 Score=35.04 Aligned_cols=85 Identities=11% Similarity=0.061 Sum_probs=41.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 004856 508 SMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA 587 (727)
Q Consensus 508 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 587 (727)
.++..+...+........++.+...+ ..+...++.++..|++.+ ..+....++. . ++.......++.+.+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~----~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K----SNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c----cccCCHHHHHHHHHHc
Confidence 34455555556666666666665554 234445555666655442 2223333321 0 1112223345555555
Q ss_pred CCHHHHHHHHHhCC
Q 004856 588 GHMDEARELVKDMP 601 (727)
Q Consensus 588 g~~~~A~~~~~~~~ 601 (727)
+.++++.-++.+++
T Consensus 83 ~l~~~~~~l~~k~~ 96 (140)
T smart00299 83 KLYEEAVELYKKDG 96 (140)
T ss_pred CcHHHHHHHHHhhc
Confidence 55666666665554
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.67 E-value=1.9 Score=41.80 Aligned_cols=160 Identities=13% Similarity=-0.016 Sum_probs=109.7
Q ss_pred HhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHH----HHHHHHHhcCCHH
Q 004856 481 AKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFL----GLLTACVNAGLVE 555 (727)
Q Consensus 481 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~----~ll~~~~~~g~~~ 555 (727)
--.|+..+|-..++++....| |..+|+--=.+|...|+.+.-...+++..-. ..||...|. .+.-++...|.++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 446777788777887655444 8888988889999999999999999998764 356654433 3344456789999
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC------HhhHHHHHHHHHHcCCHHHHHHHH
Q 004856 556 EGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPD------ARVWGPLLSACKMHSETELAELTA 629 (727)
Q Consensus 556 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~------~~~~~~ll~~~~~~g~~~~A~~~~ 629 (727)
+|++.-++..+- -+.|.-...++...+.-.|+..++.++..+-.-.=+ ..-|-...-.+...+.++.|+++|
T Consensus 193 dAEk~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 999988887743 123444556777888889999999999988731111 011111122244568999999999
Q ss_pred HHHH--ccCCCCcchH
Q 004856 630 EKLI--SMEPENAGNY 643 (727)
Q Consensus 630 ~~~~--~~~p~~~~~~ 643 (727)
++-+ +++.+|..+.
T Consensus 271 D~ei~k~l~k~Da~a~ 286 (491)
T KOG2610|consen 271 DREIWKRLEKDDAVAR 286 (491)
T ss_pred HHHHHHHhhccchhhh
Confidence 8654 3556666443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.12 Score=31.63 Aligned_cols=32 Identities=16% Similarity=0.133 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004856 607 RVWGPLLSACKMHSETELAELTAEKLISMEPE 638 (727)
Q Consensus 607 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 638 (727)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35667777788888888888888888888885
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.62 E-value=6.1 Score=36.75 Aligned_cols=86 Identities=14% Similarity=0.135 Sum_probs=46.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-----CC--CCH-hhHHHHHHHHHHcCCHHHHHHHHHHHHc----cCCCCcchHH
Q 004856 577 YASMVNLLGRAGHMDEARELVKDMP-----FK--PDA-RVWGPLLSACKMHSETELAELTAEKLIS----MEPENAGNYV 644 (727)
Q Consensus 577 ~~~li~~~~~~g~~~~A~~~~~~~~-----~~--p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~ 644 (727)
+....+.|.+..++++|-..+.+-. +. |+. ..+-+.+-.+....|+..|+..++.-.+ ..|++..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 4444555666666666665555441 11 222 1233333344455577777777776544 3455666677
Q ss_pred HHHHHHHhcCChhHHHHHH
Q 004856 645 LLSNIYAAAGKWNGVAKMR 663 (727)
Q Consensus 645 ~l~~~~~~~g~~~~a~~~~ 663 (727)
.|+.+| ..|+.|++..+.
T Consensus 233 nLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHh-ccCCHHHHHHHH
Confidence 777665 345666665554
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.17 Score=30.82 Aligned_cols=32 Identities=28% Similarity=0.243 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 004856 608 VWGPLLSACKMHSETELAELTAEKLISMEPEN 639 (727)
Q Consensus 608 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 639 (727)
.|..+...+...|++++|+..++++++++|+|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45556666788888888888888888888754
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.55 E-value=3.1 Score=43.71 Aligned_cols=157 Identities=13% Similarity=0.083 Sum_probs=93.2
Q ss_pred HHHhcCCchHHHHHHHH-HHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHH
Q 004856 308 AYYQSGFPKESLELLMC-MVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLN 386 (727)
Q Consensus 308 ~~~~~g~~~~A~~~~~~-m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 386 (727)
...-.++++++.++.+. -.-..+ +......++.-+-+.|-.+.|.++-. |. ..-.+...++|+++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~---~~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVT---------DP---DHRFELALQLGNLD 335 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HH
T ss_pred HHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcC---------Ch---HHHhHHHHhcCCHH
Confidence 33455666666555541 111111 13335666666777777777766633 22 22345567899999
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCC
Q 004856 387 CARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL 466 (727)
Q Consensus 387 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~ 466 (727)
.|.++-++.. +...|..|.....++|+++-|.+.|.+..+ +..++-.+...|+.+.-.++.+.....|-
T Consensus 336 ~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~ 404 (443)
T PF04053_consen 336 IALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD 404 (443)
T ss_dssp HHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 9999887765 667999999999999999999999988654 45566667777777777777766666552
Q ss_pred CchHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 004856 467 NSLSSVNTAIFISYAKCGCIEMAGELFDE 495 (727)
Q Consensus 467 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 495 (727)
++....++.-.|++++..+++.+
T Consensus 405 ------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 405 ------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 23333344455666666666654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.50 E-value=1.9 Score=45.21 Aligned_cols=155 Identities=14% Similarity=0.011 Sum_probs=87.2
Q ss_pred HHhcCCHHHHHHHHHh--ccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHH
Q 004856 480 YAKCGCIEMAGELFDE--EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEG 557 (727)
Q Consensus 480 ~~~~g~~~~A~~~~~~--~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 557 (727)
..-.|+++++.+.... +.. .-+....+.++.-+.+.|..+.|+++.. |+.+ -.....+.|+++.|
T Consensus 271 av~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~~---rFeLAl~lg~L~~A 337 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVT---------DPDH---RFELALQLGNLDIA 337 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS----------HHH---HHHHHHHCT-HHHH
T ss_pred HHHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcC---------ChHH---HhHHHHhcCCHHHH
Confidence 3446777776665552 111 1124456777777778888888877632 3222 22334567787777
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 004856 558 RIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEP 637 (727)
Q Consensus 558 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 637 (727)
.++.+. .++...|..|.+...+.|+++-|++.+.+.+ -|..|+-.|...|+.+.-..+.+.+...+-
T Consensus 338 ~~~a~~-------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~ 404 (443)
T PF04053_consen 338 LEIAKE-------LDDPEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAKIAEERGD 404 (443)
T ss_dssp HHHCCC-------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHh-------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 766422 2356688888888888888888888888775 355566667777777766666666554332
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHH
Q 004856 638 ENAGNYVLLSNIYAAAGKWNGVAKMRTF 665 (727)
Q Consensus 638 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 665 (727)
+.....++.-.|+.++..+++..
T Consensus 405 -----~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 405 -----INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -----HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred -----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33333345556777777776653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.46 E-value=3.9 Score=33.98 Aligned_cols=68 Identities=19% Similarity=0.195 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCC
Q 004856 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYE 571 (727)
Q Consensus 502 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 571 (727)
+......-+..+...|+-++-.++++.+.+. -+|++.....+..||.+.|+..++.+++.++.++ |++
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~k 152 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK-GLK 152 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-H
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-chH
Confidence 3344455667778888888888888887653 3677888888888888888888888888888776 653
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.66 Score=43.94 Aligned_cols=98 Identities=17% Similarity=0.182 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-HhhHHHHH
Q 004856 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP-SQEHYASMVNLLGRAGHMDEARELVKDM----PFKPD-ARVWGPLL 613 (727)
Q Consensus 540 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~ll 613 (727)
.|+.-+.. .+.|++..|...|....+.|.-.+ ....+--|...+...|++++|...|..+ +-.|. +...--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 35444443 344567777777777665431100 0112223455555555555555555444 11111 12223333
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCC
Q 004856 614 SACKMHSETELAELTAEKLISMEPE 638 (727)
Q Consensus 614 ~~~~~~g~~~~A~~~~~~~~~~~p~ 638 (727)
......|+.++|...++++.+.-|.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 3344455555555555555554443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.35 E-value=7.3 Score=36.78 Aligned_cols=72 Identities=14% Similarity=0.206 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChh
Q 004856 503 IITWNSMISAYAKHGDWSQCFKLYTQMKQSDV-RP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE 575 (727)
Q Consensus 503 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 575 (727)
...|+.- ..-.+.|++++|.+.|+.+..... .| ...+...++.++.+.+++++|+...++....++-.||..
T Consensus 35 ~~LY~~g-~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d 108 (254)
T COG4105 35 SELYNEG-LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD 108 (254)
T ss_pred HHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh
Confidence 3444443 344577889999999888886431 11 345677778888888889999988888888777777654
|
|
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.095 Score=43.24 Aligned_cols=42 Identities=36% Similarity=0.596 Sum_probs=30.4
Q ss_pred ceeEEEECCEEEEEEeCCCCCcChHHHHHHHHHH--HHHHHcccccCc
Q 004856 676 GCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL--ELEIMEGRRESS 721 (727)
Q Consensus 676 ~~~~~~~~~~~~~f~~~d~~hp~~~~i~~~l~~l--~~~~~~~~~~~~ 721 (727)
|++|++. |.|++||.+||+...++..+..- ..++..++....
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQSELINKMKEEGYVPDTKEVGHDVDE 45 (116)
T ss_pred CCCccce----EEEEeCCCcCccHHHHHHHHHcCCcchhhhhCCCchh
Confidence 6899876 99999999999996666655444 555555654333
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.90 E-value=8.5 Score=36.34 Aligned_cols=169 Identities=16% Similarity=0.143 Sum_probs=102.5
Q ss_pred HHhcCCHHHHHHHHHhccCCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHHhc--
Q 004856 480 YAKCGCIEMAGELFDEEKIDSK----DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD--LITFLGLLTACVNA-- 551 (727)
Q Consensus 480 ~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~-- 551 (727)
-.+.|++++|.+.|+.+....| ...+--.++-++-+.+++++|+..+++.... -|+ ..-|...|.+.+.-
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l--yP~~~n~dY~~YlkgLs~~~~ 121 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL--YPTHPNADYAYYLKGLSYFFQ 121 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CCCCCChhHHHHHHHHHHhcc
Confidence 3567899999999998775544 2334455667788999999999999998874 342 33455555555431
Q ss_pred -----CC---HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHh-hHH-HHHHHHHHcCC
Q 004856 552 -----GL---VEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDAR-VWG-PLLSACKMHSE 621 (727)
Q Consensus 552 -----g~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~-~~~-~ll~~~~~~g~ 621 (727)
.+ ..+|..-|+.+..+| ||.. -..+|..-+.... |.. -++ .+..-|.+.|.
T Consensus 122 i~~~~rDq~~~~~A~~~f~~~i~ry---PnS~-------------Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~~ 182 (254)
T COG4105 122 IDDVTRDQSAARAAFAAFKELVQRY---PNSR-------------YAPDAKARIVKLN---DALAGHEMAIARYYLKRGA 182 (254)
T ss_pred CCccccCHHHHHHHHHHHHHHHHHC---CCCc-------------chhhHHHHHHHHH---HHHHHHHHHHHHHHHHhcC
Confidence 12 233444455555442 3321 1111111111110 111 112 22334888899
Q ss_pred HHHHHHHHHHHHccCCCCcc---hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 622 TELAELTAEKLISMEPENAG---NYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 622 ~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
+..|..-++.+++.-|+.+. .+..+..+|...|..++|...-+-+...
T Consensus 183 ~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 183 YVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred hHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 99999999999887665544 4556677899999999988887665544
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=92.90 E-value=18 Score=40.20 Aligned_cols=76 Identities=14% Similarity=0.038 Sum_probs=42.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC
Q 004856 373 NSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA 450 (727)
Q Consensus 373 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 450 (727)
..-+..+.+.+++....+.+..- ..+...-.....+....|+.++|....+.+-..|. ........++..+.+.|.
T Consensus 103 ~~~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~ 178 (644)
T PRK11619 103 SRFVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGK 178 (644)
T ss_pred HHHHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCC
Confidence 33444455667777777633222 23444445566667777887777777777655542 234445555555554443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.89 E-value=22 Score=41.10 Aligned_cols=83 Identities=19% Similarity=0.096 Sum_probs=41.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHH
Q 004856 544 LLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETE 623 (727)
Q Consensus 544 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 623 (727)
.+.+|..+|+|.+|..+..++.. +-.--..+-..|+.-+...++.-+|-++..+...+|.. -+..+.+...++
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~ 1043 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEE-----AVALLCKAKEWE 1043 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHH-----HHHHHhhHhHHH
Confidence 34555666666666666554432 11111122245666666666666666666665333332 122233444566
Q ss_pred HHHHHHHHHH
Q 004856 624 LAELTAEKLI 633 (727)
Q Consensus 624 ~A~~~~~~~~ 633 (727)
+|.++.....
T Consensus 1044 eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1044 EALRVASKAK 1053 (1265)
T ss_pred HHHHHHHhcc
Confidence 6666555443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.72 E-value=1.1 Score=42.16 Aligned_cols=100 Identities=11% Similarity=0.064 Sum_probs=76.1
Q ss_pred HHHHHHhcCC--CCChhHHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC----------
Q 004856 387 CARKIFDSVK--TKTVVSWSSMIKGYVT-----HDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG---------- 449 (727)
Q Consensus 387 ~A~~~~~~~~--~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~---------- 449 (727)
..++.|.... ++|-.+|-+++..+.. .+.++-....++.|.+-|+.-|..+|..||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3456666666 5677788888877754 3566777778889999999999999999998775543
Q ss_pred ------ChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCH
Q 004856 450 ------ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCI 486 (727)
Q Consensus 450 ------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 486 (727)
.-+-+..++++|...|+.||..+-..|++++++.+-.
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 2345677888888899988888888888888877653
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.48 E-value=6 Score=40.54 Aligned_cols=65 Identities=14% Similarity=0.144 Sum_probs=54.7
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCC----CCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 605 DARVWGPLLSACKMHSETELAELTAEKLISMEP----ENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 605 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
...+|..+...+++.|+++.|...+.++....+ ..+.....-+..+...|+.++|...++...+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445788888999999999999999999988652 24667777889999999999999999888773
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=92.32 E-value=5.4 Score=39.31 Aligned_cols=221 Identities=10% Similarity=0.080 Sum_probs=102.1
Q ss_pred HhcCCHHHHHHHHhcCCCC------ChhHHHHHHHHHHhcCChHHHHHHHH-HHHHC-CCCCCH---HHHHHHHHHHhcC
Q 004856 380 CECEDLNCARKIFDSVKTK------TVVSWSSMIKGYVTHDQSLEALRLFS-EMKLE-GVEVDF---VTIINILPACVNI 448 (727)
Q Consensus 380 ~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~-g~~p~~---~t~~~ll~a~~~~ 448 (727)
....+.++|...+.+...+ -..++..+..+....|.+++++..-- +|.-. ...-.. ..|..+-.++.+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778887777665543 12466777788888888888765432 22110 011111 1223333333333
Q ss_pred CChHHHHHHHHHHHH-hCCCc---hHhHHHHHHHHHHhcCCHHHHHHHHHhccCC-----CC--CHHHHHHHHHHHHHcC
Q 004856 449 GALEHVKYLHGYSMK-LGLNS---LSSVNTAIFISYAKCGCIEMAGELFDEEKID-----SK--DIITWNSMISAYAKHG 517 (727)
Q Consensus 449 ~~~~~a~~~~~~~~~-~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~--~~~~~~~li~~~~~~g 517 (727)
.++.+++.+-..-.. .|..+ --.....+..++.-.+.++++++.|+..-.. .| ....+-.+-..|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 333333333222221 11111 0112223444455555566666666652110 11 2345556666666666
Q ss_pred ChHHHHHHHHHHHH----CCCCCChHHHHH-----HHHHHHhcCCHHHHHHHHHHhHHh---cCCCCC-hhHHHHHHHHH
Q 004856 518 DWSQCFKLYTQMKQ----SDVRPDLITFLG-----LLTACVNAGLVEEGRIIFKEMKES---YGYEPS-QEHYASMVNLL 584 (727)
Q Consensus 518 ~~~~A~~~~~~m~~----~g~~p~~~t~~~-----ll~~~~~~g~~~~a~~~~~~~~~~---~~~~p~-~~~~~~li~~~ 584 (727)
++++|+-...+..+ .++..=...|.. +.-++...|.+..|.+.-++..+. .|-.+. .....++.+.|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 66666655554433 111111122222 223445556666665555554332 122221 22334555666
Q ss_pred HhcCCHHHHHHHHHhC
Q 004856 585 GRAGHMDEARELVKDM 600 (727)
Q Consensus 585 ~~~g~~~~A~~~~~~~ 600 (727)
...|+.|.|..-++.+
T Consensus 257 R~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQA 272 (518)
T ss_pred HhcccHhHHHHHHHHH
Confidence 6666666666555543
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.64 Score=44.97 Aligned_cols=91 Identities=12% Similarity=0.100 Sum_probs=42.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCC
Q 004856 545 LTACVNAGLVEEGRIIFKEMKESYGYEP-SQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSE 621 (727)
Q Consensus 545 l~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 621 (727)
.+-|.++|.+++|+..|.... .+.| |..++..-..+|.+..++..|+.=.+.+ .+.. -...|.--..+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 334555555666665555544 2333 4455555555555555555544433332 1110 01122223333334455
Q ss_pred HHHHHHHHHHHHccCCC
Q 004856 622 TELAELTAEKLISMEPE 638 (727)
Q Consensus 622 ~~~A~~~~~~~~~~~p~ 638 (727)
.++|..-++.+++++|.
T Consensus 181 ~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHHhHHHHHhhCcc
Confidence 55555555555555554
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.80 E-value=5.8 Score=34.58 Aligned_cols=86 Identities=14% Similarity=0.131 Sum_probs=44.8
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHhhHHHHHHHHHHcCCHHHHH
Q 004856 549 VNAGLVEEGRIIFKEMKESYGYEPSQE-HYASMVNLLGRAGHMDEARELVKDMP-FKPDARVWGPLLSACKMHSETELAE 626 (727)
Q Consensus 549 ~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~A~ 626 (727)
...++.+++..++..+.- +.|... .-..-...+.+.|++.+|..+|++.. ..|....-..|+..|.....-..=.
T Consensus 21 l~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWR 97 (160)
T ss_pred HccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHH
Confidence 345566666666666652 344422 22222344456677777777777662 2333334445555555444444444
Q ss_pred HHHHHHHccCC
Q 004856 627 LTAEKLISMEP 637 (727)
Q Consensus 627 ~~~~~~~~~~p 637 (727)
...+++++..+
T Consensus 98 ~~A~evle~~~ 108 (160)
T PF09613_consen 98 RYADEVLESGA 108 (160)
T ss_pred HHHHHHHhcCC
Confidence 55555555554
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.78 E-value=1.4 Score=42.46 Aligned_cols=77 Identities=17% Similarity=0.155 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCChHHHHHH
Q 004856 471 SVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQ-----SDVRPDLITFLGL 544 (727)
Q Consensus 471 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~l 544 (727)
.++..++..+..+|+.+.+.+.++++....| +...|..++.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 4556677788888888888888888654444 778888888888888888888888887765 5677766665554
Q ss_pred HHH
Q 004856 545 LTA 547 (727)
Q Consensus 545 l~~ 547 (727)
..+
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.43 E-value=14 Score=35.65 Aligned_cols=140 Identities=12% Similarity=0.082 Sum_probs=76.6
Q ss_pred HhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCH--HHHHHHHHHHHHcCChHHH
Q 004856 445 CVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI--ITWNSMISAYAKHGDWSQC 522 (727)
Q Consensus 445 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A 522 (727)
....|+..++..+++...... +-+....-.+...|...|+.+.|..++..++....+. .....-|..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 344556666666666555543 2224445567777888888888888888877532222 1212234444444444444
Q ss_pred HHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 004856 523 FKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG 588 (727)
Q Consensus 523 ~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 588 (727)
..+-.+.-. .| |...-..+...+...|+.++|.+.+-.+.++..-.-|...-..|++.+.--|
T Consensus 223 ~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 223 QDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 444444433 45 5555666777777788888887766555544111223334444444443333
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.31 E-value=4.5 Score=33.48 Aligned_cols=54 Identities=22% Similarity=0.161 Sum_probs=28.7
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 004856 512 AYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKES 567 (727)
Q Consensus 512 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 567 (727)
+++..|+.+.|++.|.+.+. +-| +...|+.-..++.-.|+.++|+.-+++..+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 34455555555555555554 233 4455555555555555555555555555443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.25 E-value=0.54 Score=30.83 Aligned_cols=30 Identities=10% Similarity=0.155 Sum_probs=27.0
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 640 AGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 640 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
+.++..++.+|...|++++|+++++++.+.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 357889999999999999999999998876
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.08 E-value=12 Score=35.01 Aligned_cols=137 Identities=12% Similarity=0.116 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 004856 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLL 584 (727)
Q Consensus 505 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 584 (727)
.|.--..+|....++++|...+.+..+. .+-|...| .. ...++.|.-+.+++.+ +.--...|+--..+|
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslf-hA------AKayEqaamLake~~k---lsEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-HA------AKAYEQAAMLAKELSK---LSEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-HH------HHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHH
Confidence 4444555666666666666665555431 12222111 11 1223334444444432 111123444445555
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCC---C---cchHHHHHHHHHhcCChhH
Q 004856 585 GRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPE---N---AGNYVLLSNIYAAAGKWNG 658 (727)
Q Consensus 585 ~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~---~---~~~~~~l~~~~~~~g~~~~ 658 (727)
..+|.++-|-..+++.. -....-+.++|+++|++...+--. + ...+...+++|.+..+++|
T Consensus 102 ~E~GspdtAAmaleKAa-------------k~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~E 168 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAA-------------KALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTE 168 (308)
T ss_pred HHhCCcchHHHHHHHHH-------------HHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhH
Confidence 55565555554444431 023445667777777777663221 1 1234455666777777777
Q ss_pred HHHHHHH
Q 004856 659 VAKMRTF 665 (727)
Q Consensus 659 a~~~~~~ 665 (727)
|...+.+
T Consensus 169 aa~a~lK 175 (308)
T KOG1585|consen 169 AATAFLK 175 (308)
T ss_pred HHHHHHH
Confidence 7666554
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.74 E-value=12 Score=36.88 Aligned_cols=134 Identities=13% Similarity=0.127 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--CCC----hHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHH
Q 004856 417 LEALRLFSEMKLEGVEVDFVTIINILPACVN--IGA----LEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAG 490 (727)
Q Consensus 417 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~~~----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 490 (727)
++.+.+++.|.+.|.+-+..+|.+....... ..+ ...+..+++.|++...-.+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLT--------------------- 137 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLT--------------------- 137 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcccc---------------------
Confidence 4566778888888888888777654433322 111 2334444444444321100
Q ss_pred HHHHhccCCCCCHHHHHHHHHHHHHcCC----hHHHHHHHHHHHHCCCCCC-h-HHHHHHHHHHHhcCC--HHHHHHHHH
Q 004856 491 ELFDEEKIDSKDIITWNSMISAYAKHGD----WSQCFKLYTQMKQSDVRPD-L-ITFLGLLTACVNAGL--VEEGRIIFK 562 (727)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p~-~-~t~~~ll~~~~~~g~--~~~a~~~~~ 562 (727)
.++-..+..++.. ..++ .+.++.+|+.+.+.|+..+ . .....++..+..... ...+.++++
T Consensus 138 ---------s~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~ 206 (297)
T PF13170_consen 138 ---------SPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYN 206 (297)
T ss_pred ---------CccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 2344455555443 2222 3566778888888787763 3 333333333322222 447778888
Q ss_pred HhHHhcCCCCChhHHHHHHHH
Q 004856 563 EMKESYGYEPSQEHYASMVNL 583 (727)
Q Consensus 563 ~~~~~~~~~p~~~~~~~li~~ 583 (727)
.+.+. |+++...+|..+.-.
T Consensus 207 ~l~~~-~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 207 ALKKN-GVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHc-CCccccccccHHHHH
Confidence 88877 888887777665433
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.64 E-value=0.52 Score=29.26 Aligned_cols=26 Identities=15% Similarity=0.174 Sum_probs=20.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHH
Q 004856 642 NYVLLSNIYAAAGKWNGVAKMRTFLR 667 (727)
Q Consensus 642 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 667 (727)
++..|+.+|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888889999999988888743
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.43 E-value=33 Score=38.16 Aligned_cols=54 Identities=11% Similarity=0.110 Sum_probs=36.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 004856 580 MVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLIS 634 (727)
Q Consensus 580 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 634 (727)
++..+....+.+.+..+.+..+-. ++..|..++..+...+..+.-.+...++++
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~ 764 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVLE 764 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHHH
Confidence 455666777778888887777533 777888888888777766555555554443
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.41 E-value=5.7 Score=36.70 Aligned_cols=62 Identities=10% Similarity=-0.001 Sum_probs=37.4
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHhC-----CCCCCHhhHHHHHHH---HHHcCCHHHHHHHHHHHHccCCCC
Q 004856 578 ASMVNLLGRA-GHMDEARELVKDM-----PFKPDARVWGPLLSA---CKMHSETELAELTAEKLISMEPEN 639 (727)
Q Consensus 578 ~~li~~~~~~-g~~~~A~~~~~~~-----~~~p~~~~~~~ll~~---~~~~g~~~~A~~~~~~~~~~~p~~ 639 (727)
..+.+.|... .++++|+..++.. +-+.+...-..++.+ -...+++.+|+.+|+++.....++
T Consensus 117 ~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 117 IEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3455555544 5666777776665 122233333444443 457789999999999988754433
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=90.41 E-value=5.7 Score=41.18 Aligned_cols=57 Identities=14% Similarity=0.032 Sum_probs=33.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCC--CcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004856 612 LLSACKMHSETELAELTAEKLISMEPE--NAGNYVLLSNIYAAAGKWNGVAKMRTFLRD 668 (727)
Q Consensus 612 ll~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 668 (727)
+...+.+.|+.++|++.++.+++..|. +-.....|+.++...+.+.++..++.+-.+
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 444456666666666666666655543 234555666666666666666666665443
|
The molecular function of this protein is uncertain. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.85 E-value=3.6 Score=35.81 Aligned_cols=82 Identities=18% Similarity=0.139 Sum_probs=56.8
Q ss_pred hHHHHHHHHH---HhcCCHHHHHHHHHhC-CCCCCHhhHHHHHHH-HHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHH
Q 004856 575 EHYASMVNLL---GRAGHMDEARELVKDM-PFKPDARVWGPLLSA-CKMHSETELAELTAEKLISMEPENAGNYVLLSNI 649 (727)
Q Consensus 575 ~~~~~li~~~---~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 649 (727)
.+.+.|++.+ .+.++.+++..++..+ -.+|.......+-.. +...|++.+|+.+++.+.+-.|..+..-..++.+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3444555444 3677899999999888 467776665555444 7889999999999999887777666555555555
Q ss_pred HHhcCCh
Q 004856 650 YAAAGKW 656 (727)
Q Consensus 650 ~~~~g~~ 656 (727)
+...|+.
T Consensus 88 L~~~~D~ 94 (160)
T PF09613_consen 88 LYALGDP 94 (160)
T ss_pred HHHcCCh
Confidence 5555543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.65 E-value=8.6 Score=34.69 Aligned_cols=95 Identities=17% Similarity=0.226 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHHhcCCHHHHHHHHHHhHHhc--CCCCCh----h
Q 004856 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL--ITFLGLLTACVNAGLVEEGRIIFKEMKESY--GYEPSQ----E 575 (727)
Q Consensus 504 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~p~~----~ 575 (727)
..+..+..-|.+.|+.++|++.|.++.+....|.. ..+..+++.+...+++..+.....++.... +-+++. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 35666777788888888888888887776555543 345667777777788888777777665431 111111 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC
Q 004856 576 HYASMVNLLGRAGHMDEARELVKDM 600 (727)
Q Consensus 576 ~~~~li~~~~~~g~~~~A~~~~~~~ 600 (727)
+|..|. +...|++.+|-+.|-+.
T Consensus 117 ~~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHH--HHHhchHHHHHHHHHcc
Confidence 222222 23467888888877766
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=89.62 E-value=47 Score=38.67 Aligned_cols=174 Identities=20% Similarity=0.219 Sum_probs=98.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC-----CCCCCH--HHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCC--------Cc
Q 004856 406 MIKGYVTHDQSLEALRLFSEMKLE-----GVEVDF--VTIINILPACVNIG--ALEHVKYLHGYSMKLGL--------NS 468 (727)
Q Consensus 406 li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~--~t~~~ll~a~~~~~--~~~~a~~~~~~~~~~~~--------~~ 468 (727)
++-+-..+.++.+=+-+++++... ..+.|. .-|...+...+..| -+++...+ ++++++ .|
T Consensus 857 l~VAq~SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~---I~kh~Ly~~aL~ly~~ 933 (1265)
T KOG1920|consen 857 LLVAQKSQKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNY---IKKHGLYDEALALYKP 933 (1265)
T ss_pred HHHHHHhccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHH---HHhcccchhhhheecc
Confidence 334445667777777777776632 122222 13444444444444 34444433 233332 23
Q ss_pred hHh----HHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHH--HH
Q 004856 469 LSS----VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLIT--FL 542 (727)
Q Consensus 469 ~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~ 542 (727)
+.. .|.+..+.+...+.+++|.-.|+...+ ..--+.+|...|++.+|+.+..+|.. .-+... -.
T Consensus 934 ~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-------lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~ 1003 (1265)
T KOG1920|consen 934 DSEKQKVIYEAYADHLREELMSDEAALMYERCGK-------LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAE 1003 (1265)
T ss_pred CHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc-------HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHH
Confidence 333 334444445556777777777765432 11245677778888888887776643 123222 24
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 004856 543 GLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601 (727)
Q Consensus 543 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 601 (727)
.|..-+...++.-+|-++..+.... | .--+..|++...+++|..+.....
T Consensus 1004 ~L~s~L~e~~kh~eAa~il~e~~sd----~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLEYLSD----P-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHcccchhHHHHHHHHhcC----H-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 5666777788888887777666532 2 234567778888888888877663
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=89.57 E-value=0.57 Score=28.45 Aligned_cols=31 Identities=19% Similarity=0.144 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004856 608 VWGPLLSACKMHSETELAELTAEKLISMEPE 638 (727)
Q Consensus 608 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 638 (727)
+|..+...+...|+.++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4555556677778888888888887777763
|
... |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.32 E-value=38 Score=37.19 Aligned_cols=78 Identities=10% Similarity=-0.035 Sum_probs=42.9
Q ss_pred CHHHHHHHHHhCCCCCCHhhHHHHHHHHH----HcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcC---ChhHHHH
Q 004856 589 HMDEARELVKDMPFKPDARVWGPLLSACK----MHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAG---KWNGVAK 661 (727)
Q Consensus 589 ~~~~A~~~~~~~~~~p~~~~~~~ll~~~~----~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~a~~ 661 (727)
+.+.+..++.+....-+......+...+. ...+.+.|...+.++.... ......++.++..-- .+..|.+
T Consensus 454 ~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~ 530 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKR 530 (552)
T ss_pred chhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHH
Confidence 34455555555533334444444443322 1235777777777776555 566666666655431 1567777
Q ss_pred HHHHHHhC
Q 004856 662 MRTFLRDR 669 (727)
Q Consensus 662 ~~~~m~~~ 669 (727)
++++..+.
T Consensus 531 ~~~~~~~~ 538 (552)
T KOG1550|consen 531 YYDQASEE 538 (552)
T ss_pred HHHHHHhc
Confidence 77776654
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=89.26 E-value=2.5 Score=36.07 Aligned_cols=70 Identities=14% Similarity=0.140 Sum_probs=36.9
Q ss_pred hcCCHHHHHHHHHhC-CCCCCHhhHHHHHHH-HHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCC
Q 004856 586 RAGHMDEARELVKDM-PFKPDARVWGPLLSA-CKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGK 655 (727)
Q Consensus 586 ~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 655 (727)
+.++.+++..+++.+ -..|+......+-.. +...|++++|.++++.+.+-.+..+..-..++.++.-.|+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 356666666666666 244544433333332 5566666666666666665554333333344444444444
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=89.00 E-value=42 Score=37.34 Aligned_cols=86 Identities=22% Similarity=0.207 Sum_probs=45.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCH--hhHHHHHHH-HHHcCC-----------HHHHHHHHHHHHc-------cCCC
Q 004856 580 MVNLLGRAGHMDEARELVKDMPFKPDA--RVWGPLLSA-CKMHSE-----------TELAELTAEKLIS-------MEPE 638 (727)
Q Consensus 580 li~~~~~~g~~~~A~~~~~~~~~~p~~--~~~~~ll~~-~~~~g~-----------~~~A~~~~~~~~~-------~~p~ 638 (727)
...-+...|++++|..++.-++ +.|. ...|.+++- ...... ...|..+.+.... ..+.
T Consensus 420 ~A~~~e~~g~~~dAi~Ly~La~-~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~ 498 (613)
T PF04097_consen 420 AAREAEERGRFEDAILLYHLAE-EYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSRK 498 (613)
T ss_dssp HHHHHHHCT-HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HH
T ss_pred HHHHHHHCCCHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccHH
Confidence 3445567888888888888775 2222 234444444 222222 3344444443322 1222
Q ss_pred CcchHHHHHH-----HHHhcCChhHHHHHHHHH
Q 004856 639 NAGNYVLLSN-----IYAAAGKWNGVAKMRTFL 666 (727)
Q Consensus 639 ~~~~~~~l~~-----~~~~~g~~~~a~~~~~~m 666 (727)
...++..|.. -+.+.|+|++|.+.++++
T Consensus 499 ~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 499 NRETFQLLLDLAEFFDLYHAGQYEQALDIIEKL 531 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 3445555544 367889999998887754
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.39 E-value=0.76 Score=28.52 Aligned_cols=28 Identities=14% Similarity=0.074 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004856 608 VWGPLLSACKMHSETELAELTAEKLISM 635 (727)
Q Consensus 608 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 635 (727)
+|..|...|.+.|++++|+.++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3566777788888888888888885543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=88.07 E-value=28 Score=34.17 Aligned_cols=61 Identities=10% Similarity=-0.039 Sum_probs=26.6
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 004856 572 PSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPDARVWGPLLSACKMHSETELAELTAEKLISMEP 637 (727)
Q Consensus 572 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 637 (727)
++..+-..-+.++++.|+. +|...+-+. . .++ .....+.++...|+. +|...+.++.+.+|
T Consensus 204 ~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~-~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDK-RVLSVLIKELK-KGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred CChHHHHHHHHHHHccCCh-hHHHHHHHHHc-CCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 3444444455555555552 233332222 2 122 122344445555553 45555555555444
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=87.86 E-value=29 Score=34.10 Aligned_cols=17 Identities=6% Similarity=0.008 Sum_probs=10.2
Q ss_pred HHHhcCChhHHHHHHHH
Q 004856 649 IYAAAGKWNGVAKMRTF 665 (727)
Q Consensus 649 ~~~~~g~~~~a~~~~~~ 665 (727)
.+.+.++|++|.+.++.
T Consensus 255 ~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHhhcCHHHHHHHHHH
Confidence 35556666666666653
|
It is also involved in sporulation []. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.70 E-value=6 Score=38.21 Aligned_cols=100 Identities=16% Similarity=0.106 Sum_probs=73.3
Q ss_pred hCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCC-----CC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 004856 464 LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID-----SK--DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP 536 (727)
Q Consensus 464 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 536 (727)
.|.+....+...++..-....++++++..+-+++.. .| ...+|-.+ +-.-++++++.++..=+..|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl----llky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL----LLKYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH----HHccChHHHHHHHhCcchhcccc
Confidence 455555556666666666677888888888776652 12 22333322 23346889999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 004856 537 DLITFLGLLTACVNAGLVEEGRIIFKEMKES 567 (727)
Q Consensus 537 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 567 (727)
|..+++.++..+.+.+++.+|.++.-.|...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999998888777654
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.35 E-value=1.5 Score=42.04 Aligned_cols=103 Identities=13% Similarity=0.156 Sum_probs=79.5
Q ss_pred HhhcCCCchhhHHHHHHHHHccCChhHHHHHHhcCCC-C------CcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCC
Q 004856 57 ILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS-P------NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYP 129 (727)
Q Consensus 57 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-~------~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p 129 (727)
+..|......+...+|..-.....++++...+-+... | +... -+.++-+. .-+++.++.++..-.+.|+.|
T Consensus 56 F~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 56 FERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred hhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhcccc
Confidence 5567778888888888887777889999988877653 2 2221 12233332 337789999999999999999
Q ss_pred CcccHHHHHHHhhccCChhHHHHHHHHHHHHc
Q 004856 130 AEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG 161 (727)
Q Consensus 130 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 161 (727)
|.+|++.+|..+.+.+++.+|.++.-.|+...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999999988877776554
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=87.29 E-value=31 Score=33.85 Aligned_cols=75 Identities=13% Similarity=0.047 Sum_probs=40.7
Q ss_pred chHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 004856 468 SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA 547 (727)
Q Consensus 468 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 547 (727)
++..+-...+.++++.|+......+.+.+. .+++ .-..+.++...|.. +|+..+.++.+. .||...-...+.+
T Consensus 204 ~~~~VR~~A~~aLg~~~~~~av~~Li~~L~--~~~~--~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a 276 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDKRVLSVLIKELK--KGTV--GDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDK 276 (280)
T ss_pred CChHHHHHHHHHHHccCChhHHHHHHHHHc--CCch--HHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHH
Confidence 344444555555666666433333333333 3332 23566777777774 677777777763 3566655555555
Q ss_pred HH
Q 004856 548 CV 549 (727)
Q Consensus 548 ~~ 549 (727)
|.
T Consensus 277 ~~ 278 (280)
T PRK09687 277 LK 278 (280)
T ss_pred Hh
Confidence 54
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.27 E-value=45 Score=35.67 Aligned_cols=186 Identities=16% Similarity=0.132 Sum_probs=124.1
Q ss_pred chHhHHHHHHHHHHhcCCHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 004856 468 SLSSVNTAIFISYAKCGCIEMAGELFDEEKID-SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLT 546 (727)
Q Consensus 468 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 546 (727)
++...|...++.-.+.|+.+...-+|++.... ..=...|-..+.-....|+.+-|..++....+--++-.+.+-..-..
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 35567777777788889999888888875411 11234555555555556888888887776665433333443333333
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHHHHH---HHHHhC-CCCCCHhhHHH----HHHH-H
Q 004856 547 ACVNAGLVEEGRIIFKEMKESYGYEPSQ-EHYASMVNLLGRAGHMDEAR---ELVKDM-PFKPDARVWGP----LLSA-C 616 (727)
Q Consensus 547 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~----ll~~-~ 616 (727)
-+-..|+.+.|..+++.+.+. . |+. ..-..-+....+.|+.+.+. +++... ..+-+..+... .... +
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 456678999999999999986 3 653 33344566677889888888 555444 22222222222 2222 5
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCCh
Q 004856 617 KMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKW 656 (727)
Q Consensus 617 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 656 (727)
.-.++.+.|..++.++.+..|++...|..+++.....+..
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcc
Confidence 5678999999999999999999999999998887776633
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.08 E-value=54 Score=36.31 Aligned_cols=50 Identities=12% Similarity=0.196 Sum_probs=34.8
Q ss_pred hHHhHHHHHhhcCCChHHHHHHHhcCCCCCeehHHHHHHHHHhcCCchHH
Q 004856 269 SVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKES 318 (727)
Q Consensus 269 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 318 (727)
.++...|+.+.-.|++++|-...-.|...+..-|.--+..+...++....
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 45566777777777788777777777777777777777666666655443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=87.08 E-value=32 Score=33.78 Aligned_cols=18 Identities=11% Similarity=-0.224 Sum_probs=12.0
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 004856 616 CKMHSETELAELTAEKLI 633 (727)
Q Consensus 616 ~~~~g~~~~A~~~~~~~~ 633 (727)
+.+.++++.|...|+-.+
T Consensus 256 ~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHhhcCHHHHHHHHHHHH
Confidence 556777777777776543
|
It is also involved in sporulation []. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=86.50 E-value=0.2 Score=43.66 Aligned_cols=85 Identities=16% Similarity=0.089 Sum_probs=53.3
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHHcCCCchhHHHHHHHhhhccCCCChhhhhhh-ccCCCCCcccHHHHHHHHHhCCCc
Q 004856 136 FVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI-QRKFKDLKSRWNSLISLAVQNGKS 214 (727)
Q Consensus 136 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~~~g~~~~a~~~-~~~~~~~~~~~~~li~~~~~~g~~ 214 (727)
.++..+...+.+......++.+.+.+...+....+.|+.+|++. +..+..... ..... .....++..|.+.|.+
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~--~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKY--DPYEKLLEFLKTSNN---YDLDKALRLCEKHGLY 86 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCT--TTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhc--CCchHHHHHcccccc---cCHHHHHHHHHhcchH
Confidence 34556666666777777777777666566677888888888887 666666666 42222 3345566666666777
Q ss_pred hhHHHHHHHHH
Q 004856 215 EKSFELFKLMR 225 (727)
Q Consensus 215 ~~A~~~~~~m~ 225 (727)
++|.-++.++.
T Consensus 87 ~~a~~Ly~~~~ 97 (143)
T PF00637_consen 87 EEAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHHCCT
T ss_pred HHHHHHHHHcc
Confidence 67666666543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=86.22 E-value=17 Score=35.89 Aligned_cols=60 Identities=12% Similarity=0.015 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhcCCC--hHHHHHHHHHHHHhCCCchHhHHHHH
Q 004856 417 LEALRLFSEMKLEGVEVDF--VTIINILPACVNIGA--LEHVKYLHGYSMKLGLNSLSSVNTAI 476 (727)
Q Consensus 417 ~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l 476 (727)
+.+..+|+.+.+.|...+. .....+|..+..... ...+..+++.+.+.|+++...+|..+
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 4556677777776655433 233334433333322 23566667777777777666665543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.20 E-value=1.8 Score=26.18 Aligned_cols=27 Identities=19% Similarity=0.496 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004856 505 TWNSMISAYAKHGDWSQCFKLYTQMKQ 531 (727)
Q Consensus 505 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 531 (727)
.|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555555555566666655555555
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=86.18 E-value=57 Score=36.32 Aligned_cols=21 Identities=24% Similarity=0.558 Sum_probs=14.6
Q ss_pred HHhcCCHHHHHHHHHhCCCCC
Q 004856 584 LGRAGHMDEARELVKDMPFKP 604 (727)
Q Consensus 584 ~~~~g~~~~A~~~~~~~~~~p 604 (727)
+...|++++|++.++++++-|
T Consensus 515 ~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHcCCHHHHHHHHHhCCCCC
Confidence 457788888998888887777
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=85.91 E-value=64 Score=36.04 Aligned_cols=159 Identities=12% Similarity=0.029 Sum_probs=70.3
Q ss_pred HHHHHHHHH-hCCCchhHHHHHHHHHhCCCCCChh-----hHHHHHHHhcccCChhHHHHHHHHHHHhcCC----CChhH
Q 004856 201 WNSLISLAV-QNGKSEKSFELFKLMRMEGAEFDSG-----TLINLLRSTVELKSLELGRIVHCVAVVSDFC----KDLSV 270 (727)
Q Consensus 201 ~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~-----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~ 270 (727)
+-.+...+. ...+.++|...+.+.....-+++-. +-..++..+.+.+... |...++..++.--. +-...
T Consensus 62 ~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~ 140 (608)
T PF10345_consen 62 RLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYA 140 (608)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHH
Confidence 333344433 4566677777666554322122211 1112233333333333 66666665543211 12222
Q ss_pred HhHH-HHHhhcCCChHHHHHHHhcCCC-----CC--eehHHHHHHHH--HhcCCchHHHHHHHHHHHcCC---------C
Q 004856 271 NTAL-LSMYSKLASLEDAKMLFDKMSD-----KD--RVVWNIMISAY--YQSGFPKESLELLMCMVRSGF---------R 331 (727)
Q Consensus 271 ~~~l-i~~~~~~g~~~~A~~~~~~~~~-----~~--~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~---------~ 331 (727)
+.-+ +..+...++...|.+.++.+.. .| +..+-.++.+. .+.+.++++++.++++..... .
T Consensus 141 frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~ 220 (608)
T PF10345_consen 141 FRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHI 220 (608)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCc
Confidence 2222 2222233667767766665532 11 12222233332 234556667666666633211 2
Q ss_pred CChhhHHHHHHHhh--cCCChHHHHHHHHHH
Q 004856 332 ADLFTAIAAVSSIS--TMKNIEWGKQMHANV 360 (727)
Q Consensus 332 p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~ 360 (727)
|-..+|..+++.++ ..|+++.+.+.+..+
T Consensus 221 ~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 221 PQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33445555555444 455555555554443
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.88 E-value=3.5 Score=39.82 Aligned_cols=56 Identities=20% Similarity=0.293 Sum_probs=26.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 004856 612 LLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLR 667 (727)
Q Consensus 612 ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 667 (727)
++..+...|+.+.++..+++++..+|-+...|..++.+|.+.|+...|++.++.+.
T Consensus 159 lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 159 LAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 33334444444444444444444444444444444444555554444444444443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=85.13 E-value=7.5 Score=33.28 Aligned_cols=94 Identities=14% Similarity=0.169 Sum_probs=55.7
Q ss_pred HHHHHHHHH---HHhcCCHHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHhhHHHHH
Q 004856 539 ITFLGLLTA---CVNAGLVEEGRIIFKEMKESYGYEPSQE-HYASMVNLLGRAGHMDEARELVKDMPFKP-DARVWGPLL 613 (727)
Q Consensus 539 ~t~~~ll~~---~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll 613 (727)
...+.|+.. -...++.+++..++..|.- +.|+.. .-..-...+.+.|++++|..+|++....+ ....-..|+
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~ 84 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRV---LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALL 84 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHH
Confidence 344444443 3457899999999999984 566532 22233455678999999999999995443 333333444
Q ss_pred HHHHHcCCHHHHHHHHHHHHcc
Q 004856 614 SACKMHSETELAELTAEKLISM 635 (727)
Q Consensus 614 ~~~~~~g~~~~A~~~~~~~~~~ 635 (727)
..|.....-..=....+.+++.
T Consensus 85 A~CL~al~Dp~Wr~~A~~~le~ 106 (153)
T TIGR02561 85 ALCLNAKGDAEWHVHADEVLAR 106 (153)
T ss_pred HHHHHhcCChHHHHHHHHHHHh
Confidence 4454433323333344444443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=84.87 E-value=55 Score=34.35 Aligned_cols=167 Identities=8% Similarity=0.066 Sum_probs=77.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCH
Q 004856 475 AIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLV 554 (727)
Q Consensus 475 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 554 (727)
++++.++......-.+.+-.+|....-+-..+-.++.+|..+ ..++-..+|+++.+.. -|.+....-+..+...++.
T Consensus 71 ~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa~~yEkik~ 147 (711)
T COG1747 71 TLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELADKYEKIKK 147 (711)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHHHHHHHhch
Confidence 333334433333333333333332223444555555666655 4455556666666532 2333333333333333556
Q ss_pred HHHHHHHHHhHHhcCCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHhhHHHHHHHHHHcCCHHH
Q 004856 555 EEGRIIFKEMKESYGYEPS------QEHYASMVNLLGRAGHMDEARELVKDM----PFKPDARVWGPLLSACKMHSETEL 624 (727)
Q Consensus 555 ~~a~~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~~g~~~~ 624 (727)
+.+..+|.++..+ +.|. .++|..|+... ..+.+....+..+. +..--.+.+.-+..-|....++.+
T Consensus 148 sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~e 223 (711)
T COG1747 148 SKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTE 223 (711)
T ss_pred hhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHH
Confidence 6666666665543 2221 12344444322 22344444444433 222223334444444556666777
Q ss_pred HHHHHHHHHccCCCCcchHHHHHH
Q 004856 625 AELTAEKLISMEPENAGNYVLLSN 648 (727)
Q Consensus 625 A~~~~~~~~~~~p~~~~~~~~l~~ 648 (727)
|+++...+++.+..|..+...++.
T Consensus 224 ai~Ilk~il~~d~k~~~ar~~~i~ 247 (711)
T COG1747 224 AIRILKHILEHDEKDVWARKEIIE 247 (711)
T ss_pred HHHHHHHHhhhcchhhhHHHHHHH
Confidence 777777666666555544444443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=84.83 E-value=60 Score=34.80 Aligned_cols=138 Identities=11% Similarity=0.171 Sum_probs=71.7
Q ss_pred ChhHHhHHHHHhhcCCChHHHHHHHhcCCCCCee---hHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 004856 267 DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRV---VWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343 (727)
Q Consensus 267 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 343 (727)
+...|+.+|.---...+.+.+..+++.+...=+. -|-....-=.+.|..+.+.++|++-+. |++-....|...+..
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAF 122 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHH
Confidence 3444555554444444445555555555432222 233333333456777777777777664 244444444444433
Q ss_pred hh-cCCChHHHHHHHHHHHHh-CCC-CChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHH
Q 004856 344 IS-TMKNIEWGKQMHANVLRN-GSD-YQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSS 405 (727)
Q Consensus 344 ~~-~~~~~~~a~~~~~~~~~~-g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 405 (727)
+. ..|+.+.....|+.+... |.. .....|...|..-..++++.....+++++.+-....++.
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~ 187 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNR 187 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHH
Confidence 32 455666666666666554 322 133445666666666666777767766665543333333
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=84.77 E-value=11 Score=29.90 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 004856 521 QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582 (727)
Q Consensus 521 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 582 (727)
+..+-++.+....+.|++....+.+.+|.+.+++..|.++++.++.+.+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 5556677777788899999999999999999999999999999988744 33336766654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.77 E-value=70 Score=35.49 Aligned_cols=75 Identities=8% Similarity=0.107 Sum_probs=45.5
Q ss_pred hhHHHHHHHhhhccCCCChhhhhhh-ccCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhc
Q 004856 166 DDVGDALVEFYIKCDGGFENEKGMI-QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTV 244 (727)
Q Consensus 166 ~~~~~~li~~y~~~~~g~~~~a~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 244 (727)
..++...|+.+.-. |++++|-.. ..|...+..-|.--+..++..++......+ +....-+.+...|..+|..+.
T Consensus 392 ~kv~~~yI~HLl~~--~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L 466 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFE--GKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFL 466 (846)
T ss_pred HHHHHHHHHHHHhc--chHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHH
Confidence 34566666666666 777777777 777777777777777777766665543322 222222234556666666555
Q ss_pred c
Q 004856 245 E 245 (727)
Q Consensus 245 ~ 245 (727)
.
T Consensus 467 ~ 467 (846)
T KOG2066|consen 467 A 467 (846)
T ss_pred H
Confidence 4
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.66 E-value=73 Score=35.66 Aligned_cols=18 Identities=17% Similarity=0.200 Sum_probs=13.8
Q ss_pred hcCCChHHHHHHHhcCCC
Q 004856 279 SKLASLEDAKMLFDKMSD 296 (727)
Q Consensus 279 ~~~g~~~~A~~~~~~~~~ 296 (727)
-..+++++|.+.+..++-
T Consensus 501 e~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 501 EDLHNYEEALRYISSLPI 518 (933)
T ss_pred HHhcCHHHHHHHHhcCCH
Confidence 345788888888888874
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.24 E-value=17 Score=32.79 Aligned_cols=98 Identities=16% Similarity=0.137 Sum_probs=51.9
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHh-hHHHHHHHHHHcCC
Q 004856 549 VNAGLVEEGRIIFKEMKESYGYEPS-----QEHYASMVNLLGRAGHMDEARELVKDM-PFKPDAR-VWGPLLSACKMHSE 621 (727)
Q Consensus 549 ~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~ 621 (727)
...|++++|..-|...... +++. ...|..-..++.+.+.++.|++-..+. .+.|... ...--..+|.+...
T Consensus 106 F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 4455555555555555532 1221 123333344455556666665555444 3334221 11111223666778
Q ss_pred HHHHHHHHHHHHccCCCCcchHHHHHH
Q 004856 622 TELAELTAEKLISMEPENAGNYVLLSN 648 (727)
Q Consensus 622 ~~~A~~~~~~~~~~~p~~~~~~~~l~~ 648 (727)
+++|+.-|+++++.+|....+-...+.
T Consensus 184 ~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 184 YEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 888999999999888866555444443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=84.16 E-value=9.1 Score=34.52 Aligned_cols=60 Identities=10% Similarity=0.158 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 004856 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS--QEHYASMVNLLGRAGHMDEARELVKDM 600 (727)
Q Consensus 540 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~ 600 (727)
.+..+..-|.+.|+.++|.+.|.++.+. ...+. ...+-.+|+...-.|++..+...+.+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~-~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDY-CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhh-cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4556666677777777777777776654 33333 334555666666666666666666555
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=83.77 E-value=1.5 Score=24.74 Aligned_cols=24 Identities=13% Similarity=0.138 Sum_probs=18.4
Q ss_pred chHHHHHHHHHhcCChhHHHHHHH
Q 004856 641 GNYVLLSNIYAAAGKWNGVAKMRT 664 (727)
Q Consensus 641 ~~~~~l~~~~~~~g~~~~a~~~~~ 664 (727)
.+...++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 355677888888888888887765
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=83.67 E-value=3.7 Score=40.02 Aligned_cols=80 Identities=13% Similarity=0.112 Sum_probs=58.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 004856 509 MISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA 587 (727)
Q Consensus 509 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 587 (727)
-.+-|.+.|.+++|+..|.+-.. +.| |.+++..-..+|.+...+..|+.-....... | ...+.+|.|.
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL-----d----~~Y~KAYSRR 171 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL-----D----KLYVKAYSRR 171 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh-----h----HHHHHHHHHH
Confidence 35678999999999999998887 567 9999999999999999988887766665532 1 2345666665
Q ss_pred CCHHHHHHHHHh
Q 004856 588 GHMDEARELVKD 599 (727)
Q Consensus 588 g~~~~A~~~~~~ 599 (727)
|...+++..+.+
T Consensus 172 ~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 172 MQARESLGNNME 183 (536)
T ss_pred HHHHHHHhhHHH
Confidence 544444444333
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=83.35 E-value=20 Score=28.24 Aligned_cols=59 Identities=22% Similarity=0.189 Sum_probs=41.6
Q ss_pred HHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHH
Q 004856 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFL 542 (727)
Q Consensus 479 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 542 (727)
.+...|++++|..+.+... .||...|-++-. .+.|-.+++..-+.+|..+| .|...+|.
T Consensus 48 SLmNrG~Yq~Al~l~~~~~--~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLC--YPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHccchHHHHHHhcCCCC--CchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 3566788888888888776 888888876643 36677777777777777776 55554443
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=83.31 E-value=12 Score=29.32 Aligned_cols=63 Identities=17% Similarity=0.215 Sum_probs=48.1
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 004856 518 DWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582 (727)
Q Consensus 518 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 582 (727)
+.-++.+-++.+....+.|++....+.++||.+.+++..|.++++..+.+.| .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 3445566677777778899999999999999999999999999998886533 24446665553
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=83.22 E-value=32 Score=30.46 Aligned_cols=47 Identities=6% Similarity=0.017 Sum_probs=22.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 004856 372 HNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE 418 (727)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 418 (727)
+..+++.+...|++-+|.+..+.....+...-..++.+-.+.++..-
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~l 138 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQL 138 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHH
Confidence 33444555566666666666655433333333344444444444433
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.95 E-value=32 Score=32.59 Aligned_cols=147 Identities=16% Similarity=0.159 Sum_probs=76.7
Q ss_pred CCChHHHHHHHhcCCC--C-----CeehHHHHHHHHHhcCCchHHHHHHHHHHH---cCCC--CChhhHHHHHHHhhcCC
Q 004856 281 LASLEDAKMLFDKMSD--K-----DRVVWNIMISAYYQSGFPKESLELLMCMVR---SGFR--ADLFTAIAAVSSISTMK 348 (727)
Q Consensus 281 ~g~~~~A~~~~~~~~~--~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~--p~~~t~~~ll~~~~~~~ 348 (727)
..++++|..-|+++.+ + .-.+.-.+|..+.+.|++++.+..|.+|.. ..+. -+..+.++++...+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3466777777766543 1 223445677888888888888888888743 1111 23455666666666666
Q ss_pred ChHHHHHHHHHHHHhC-CCCCh----hHHHHHHHHHHhcCCHHHHHHHHhcCCCC--------C-------hhHHHHHHH
Q 004856 349 NIEWGKQMHANVLRNG-SDYQV----SVHNSLIDMYCECEDLNCARKIFDSVKTK--------T-------VVSWSSMIK 408 (727)
Q Consensus 349 ~~~~a~~~~~~~~~~g-~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~-------~~~~~~li~ 408 (727)
+.+.-..+++.-++.- -..+. .+-+.|...|...|.+.+..+++.++... | ...|..=|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 6555555554333210 00011 12234555555556665555555544311 0 123444455
Q ss_pred HHHhcCChHHHHHHHHHHH
Q 004856 409 GYVTHDQSLEALRLFSEMK 427 (727)
Q Consensus 409 ~~~~~g~~~~A~~~~~~m~ 427 (727)
.|....+-.+-..++++..
T Consensus 200 mYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred hhhhhcccHHHHHHHHHHH
Confidence 5555555555555555443
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=82.69 E-value=22 Score=28.07 Aligned_cols=61 Identities=8% Similarity=0.131 Sum_probs=46.4
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 004856 376 IDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTII 439 (727)
Q Consensus 376 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 439 (727)
+..+...|++++|..+.+.+..||...|-+|-. .+.|..+++..-+.+|..+| .|....|.
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 345678899999999999999999999987755 36677777777777887776 45555553
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=82.35 E-value=1.6 Score=26.64 Aligned_cols=18 Identities=33% Similarity=0.547 Sum_probs=7.6
Q ss_pred HHHHHHHHHHhcCCHHHH
Q 004856 576 HYASMVNLLGRAGHMDEA 593 (727)
Q Consensus 576 ~~~~li~~~~~~g~~~~A 593 (727)
.|..|...|...|++++|
T Consensus 15 a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 15 AYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHCcCHHhh
Confidence 444444444444444443
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.98 E-value=3.9 Score=37.82 Aligned_cols=48 Identities=10% Similarity=0.104 Sum_probs=21.3
Q ss_pred HcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 004856 618 MHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTF 665 (727)
Q Consensus 618 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 665 (727)
+..+++.+..-..+++++.|+.......++........+++|+..+.+
T Consensus 56 k~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 56 KLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred HhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 344444444444444444444444444444444444444444444443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=81.55 E-value=38 Score=30.05 Aligned_cols=133 Identities=13% Similarity=0.051 Sum_probs=75.5
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC--CHHHHHHHHhcCC
Q 004856 319 LELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECE--DLNCARKIFDSVK 396 (727)
Q Consensus 319 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~ 396 (727)
++.++.+.+.+++|+...+..+++.+.+.|.+..-.+ +++.++-+|.......+-.+.... -.+-|.+.+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 4555666777888888888888888888887654433 344555554433332222221111 1334455555544
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 004856 397 TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK 463 (727)
Q Consensus 397 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 463 (727)
. .+..++..+...|++-+|+++.++.... +......++.+..+.++...-..+++...+
T Consensus 90 ~----~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 T----AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred h----hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 3455667788899999999888775322 112223455665555555544444444443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=81.16 E-value=3.9 Score=24.53 Aligned_cols=26 Identities=15% Similarity=0.512 Sum_probs=12.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 004856 506 WNSMISAYAKHGDWSQCFKLYTQMKQ 531 (727)
Q Consensus 506 ~~~li~~~~~~g~~~~A~~~~~~m~~ 531 (727)
|..+...+...|++++|++.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444455555555555555555544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.42 E-value=60 Score=34.73 Aligned_cols=38 Identities=11% Similarity=0.037 Sum_probs=33.4
Q ss_pred CEEEEEEeCC-CCCcChHHHHHHHHHH--HHHHHcccccCc
Q 004856 684 KLVHEFWAAD-QSHPQADAIYTILGIL--ELEIMEGRRESS 721 (727)
Q Consensus 684 ~~~~~f~~~d-~~hp~~~~i~~~l~~l--~~~~~~~~~~~~ 721 (727)
..+.||+|+| ++|+++.....+++.+ .+++..+|+...
T Consensus 259 rlRvGylS~dlr~Havg~l~~~v~e~hDRdkfEvfay~~g~ 299 (620)
T COG3914 259 RLRVGYLSSDLRSHAVGFLLRWVFEYHDRDKFEVFAYSLGP 299 (620)
T ss_pred ceeEEEeccccccchHHHHHHHHHHHhchhheEEEEEecCC
Confidence 4589999999 9999999999999999 669999887663
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=80.37 E-value=9.4 Score=34.69 Aligned_cols=75 Identities=15% Similarity=0.119 Sum_probs=55.6
Q ss_pred HhcCCHHHHHHHHHhCCCCC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCC----CCcchHHHHHHHHHhcCChhH
Q 004856 585 GRAGHMDEARELVKDMPFKP--DARVWGPLLSACKMHSETELAELTAEKLISMEP----ENAGNYVLLSNIYAAAGKWNG 658 (727)
Q Consensus 585 ~~~g~~~~A~~~~~~~~~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~ 658 (727)
.+.|+ ++|.+.|-++...| +....-.-+..+....|.+++++++.+++++.+ -|+..+..|+.+|.+.|+++.
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 45565 67787777774444 333444445557778899999999999998542 268899999999999999988
Q ss_pred HH
Q 004856 659 VA 660 (727)
Q Consensus 659 a~ 660 (727)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 74
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=80.10 E-value=11 Score=25.83 Aligned_cols=27 Identities=11% Similarity=0.027 Sum_probs=22.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 643 YVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 643 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
...++-++.+.|++++|.++.+.+.+.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 456777899999999999999988776
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=80.04 E-value=83 Score=33.08 Aligned_cols=161 Identities=12% Similarity=0.158 Sum_probs=110.4
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 004856 501 KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASM 580 (727)
Q Consensus 501 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 580 (727)
.|....-+++..+..+-...-...+..+|.+.| .+...|..++.+|... ..+.-..+|+++.+- .+ .|...-..|
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~-df-nDvv~~ReL 138 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEY-DF-NDVVIGREL 138 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHh-cc-hhHHHHHHH
Confidence 366667788889999888999999999999954 6888899999999988 557788888888764 22 345555667
Q ss_pred HHHHHhcCCHHHHHHHHHhC--CCCC---C---HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCC--CcchHHHHHHHH
Q 004856 581 VNLLGRAGHMDEARELVKDM--PFKP---D---ARVWGPLLSACKMHSETELAELTAEKLISMEPE--NAGNYVLLSNIY 650 (727)
Q Consensus 581 i~~~~~~g~~~~A~~~~~~~--~~~p---~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~ 650 (727)
++.|.+ ++...+..+|.++ .+-| + ...|.-+... .-.+.+....+..++...... -...+..+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 777766 8889999999887 2222 1 1245555432 133555555555555442211 223444555678
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 004856 651 AAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 651 ~~~g~~~~a~~~~~~m~~~ 669 (727)
....+|++|+++...+.+.
T Consensus 216 s~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 216 SENENWTEAIRILKHILEH 234 (711)
T ss_pred ccccCHHHHHHHHHHHhhh
Confidence 8899999999999865544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 75.3 bits (184), Expect = 4e-14
Identities = 85/556 (15%), Positives = 172/556 (30%), Gaps = 166/556 (29%)
Query: 11 LQSGHVKFLRFPANQTRPHMTATHSFSLLNLCENPQHLQQI-HARYIILHGLHQNLILSS 69
L + + F N +R L L Q L ++ A+ +++ G+
Sbjct: 119 LYNDNQVFA--KYNVSRLQP-------YLKL---RQALLELRPAKNVLIDGV-------- 158
Query: 70 NLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYP 129
LG G KT + S Y
Sbjct: 159 --------LG-----------------------------SG---KTWVA--LDVCLS-YK 175
Query: 130 AEDTYPFVI-----RSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFE 184
+ F I ++C+ S E + + KL + D + +
Sbjct: 176 VQCKMDFKIFWLNLKNCN------SPETVLEMLQKLLYQ-IDPNWTSRSDHSSNIKLRIH 228
Query: 185 NEKGMIQRKFKDLKSRWNSLISLA-VQNGKSEKSFELF-KLM---RMEG-AEFDSG---- 234
+ + ++R K K N L+ L VQN K+ +F L K++ R + +F S
Sbjct: 229 SIQAELRRLLKS-KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 235 --TLINLLRSTVELKSLEL-GRIVHCVAVVSDFCKDL-----SVNTALLSMYSKLASLED 286
+L + + + L + + C +DL + N LS+ + S+ D
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCR------PQDLPREVLTTNPRRLSIIA--ESIRD 339
Query: 287 AKMLFD--KMSDKDRVVWNIMISAYYQSGFPKESLELL-MCMVRSGFRADLFTAIAAVSS 343
+D K + D++ +I + P E ++ V F I
Sbjct: 340 GLATWDNWKHVNCDKL--TTIIESSLNVLEPAEYRKMFDRLSV---FPPS--AHI----P 388
Query: 344 ISTMKNIEWG-----------KQMHANVL--RNGSDYQVSVHNSLIDMYCECEDLNCA-R 389
+ + W ++H L + + +S+ + +++ + E+ R
Sbjct: 389 TILLS-LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447
Query: 390 KIFDSVKTKTVVSWSSMIK-----------GYVTHDQSLEALRLFSEMKLEGVEVDFV-- 436
I D +I G+ H +++E + ++ ++ F+
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH--HLKNIEHPERMTLFRMVFLDFRFLEQ 505
Query: 437 TIINILPACVNIGALEHV-----KYLH-------GYSMKLG--LNSLSSVNTAIFISYAK 482
I + A G++ + Y Y + L+ L + + S K
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS--K 563
Query: 483 CGCI-EMAGELFDEEK 497
+ +A L E++
Sbjct: 564 YTDLLRIA--LMAEDE 577
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 65.3 bits (158), Expect = 5e-11
Identities = 77/569 (13%), Positives = 175/569 (30%), Gaps = 169/569 (29%)
Query: 112 YEKTLLVYKQMALQSM--YPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVG 169
Y+ L V++ + + +D ++ D I K F +
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI--DHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 170 DALVEFYI----KCDGGF--------ENEKGMIQRKFKDLKSR-WNSLISLAVQNGKSEK 216
+ +V+ ++ + + F + + M+ R + + + R +N Q
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND-----NQ------ 124
Query: 217 SFELFKLMRMEGAEFDSGTLINLLRSTV-ELKSLELGRIVHCVA------VVSDFCKDLS 269
F + + R++ LR + EL+ ++ V V D C
Sbjct: 125 VFAKYNVSRLQ--------PYLKLRQALLELRP-AKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 270 VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELL--MCMVR 327
V + D ++ W + S P+ LE+L +
Sbjct: 176 V-----------------QCKMD-----FKIFW--LNLKNCNS--PETVLEMLQKLL--- 206
Query: 328 SGFRADLFTAIAAVSSISTMKNIEWGK---------QMHAN---VLRNGSDYQVSVHNSL 375
++ D + S + I + + + N VL N + +
Sbjct: 207 --YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA------ 258
Query: 376 IDMYCECEDLNC-------ARKIFDSV--KTKTVVSWSSMIKGYVTHDQSLEALRLFSEM 426
+ + +L+C +++ D + T T +S T D+ L + +
Sbjct: 259 WNAF----NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL-TPDEVKSLLLKYLDC 313
Query: 427 KLEGV--EVDFVTIINILPACVN-IGAL--------EHVKYLHGY----SMKLGLNSLSS 471
+ + + EV + P ++ I ++ K+++ ++ LN L
Sbjct: 314 RPQDLPREV-----LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 472 VNT-AIFISYAKCGCIEMAGELFDEE-KIDSKDI-ITWNSMISAYAKHGDWSQCFK---L 525
+F + +F I + + + W +I + ++ K +
Sbjct: 369 AEYRKMFDRLS----------VFPPSAHIPTILLSLIWFDVIKSDVMV-VVNKLHKYSLV 417
Query: 526 YTQMKQSDVR-PDLITFLGLLTACVNAGLVEEGRIIFKEMKESY----GYE------PSQ 574
Q K+S + P + +L L N + I+ + Y ++ P
Sbjct: 418 EKQPKESTISIPSI--YLELKVKLENEYALHR-SIV-----DHYNIPKTFDSDDLIPPYL 469
Query: 575 EHYASMVNLLGRAGHMDEARELVKDMPFK 603
+ Y + +G H+ + F+
Sbjct: 470 DQY--FYSHIGH--HLKNIEHPERMTLFR 494
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 65.6 bits (158), Expect = 4e-11
Identities = 19/137 (13%), Positives = 45/137 (32%), Gaps = 5/137 (3%)
Query: 475 AIFISYAKCGCIEMAGELFD-----EEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQM 529
A F + +A L +K + +N+++ +A+ G + + + +
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191
Query: 530 KQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGH 589
K + + PDL+++ L E G + A +++ RA
Sbjct: 192 KDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATV 251
Query: 590 MDEARELVKDMPFKPDA 606
+ ++ P
Sbjct: 252 LKAVHKVKPTFSLPPQL 268
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 54.8 bits (130), Expect = 1e-07
Identities = 32/275 (11%), Positives = 83/275 (30%), Gaps = 13/275 (4%)
Query: 387 CARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACV 446
C R+ +S + + G ++ D S+ +L G + + C+
Sbjct: 82 CTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK---CCL 138
Query: 447 NIG----ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID--S 500
A + HG K L +L N + +A+ G + + K +
Sbjct: 139 LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVML-GWARQGAFKELVYVLFMVKDAGLT 197
Query: 501 KDIITWNSMISAYAKHGDWSQCF-KLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI 559
D++++ + + + + + QM Q ++ + LL+ A +++
Sbjct: 198 PDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHK 257
Query: 560 IFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSAC--K 617
+ P + ++ + G + + + + + A
Sbjct: 258 VKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVC 317
Query: 618 MHSETELAELTAEKLISMEPENAGNYVLLSNIYAA 652
+ S + + E + + + A
Sbjct: 318 VVSVEKPTLPSKEVKHARKTLKTLRDQWEKALCRA 352
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 50.6 bits (119), Expect = 2e-06
Identities = 33/335 (9%), Positives = 93/335 (27%), Gaps = 22/335 (6%)
Query: 373 NSLIDMYCECEDLNCARKIFDSVKTK-------TVVSWSSMIKGYVTHDQSLEALRLFSE 425
+ + L A + + T+ +++++ G+ E + +
Sbjct: 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFM 190
Query: 426 MKLEGVEVDFVTIINILPACVNIG-ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCG 484
+K G+ D ++ L ++ + GL + + +
Sbjct: 191 VKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250
Query: 485 CIEMAGELFDEEKI--DSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFL 542
++ ++ + + + ++ KL+ +K + +
Sbjct: 251 VLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHM 310
Query: 543 GLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPF 602
L + V VE+ + KE+K + + L RA + R +
Sbjct: 311 E-LASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQ--WEKALCRALRETKNRLERE---V 364
Query: 603 KPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKM 662
P L E E+ + + L ++ + L + + + +
Sbjct: 365 YEGRFSLYPFLCLL---DEREVVRMLLQVLQALPAQGESFTTLAREL---SARTFSRHVV 418
Query: 663 RTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHP 697
+ ++ + L + + P
Sbjct: 419 QRQRVSGQVQALQNHYRKYLCLLASDAEVPEPCLP 453
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 41.3 bits (96), Expect = 7e-04
Identities = 20/169 (11%), Positives = 48/169 (28%), Gaps = 8/169 (4%)
Query: 495 EEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLV 554
+D + S Y + + Q L + + +
Sbjct: 93 SRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGD------SLECMAMTVQILLKLDRL 146
Query: 555 EEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM--PFKPDARVWGPL 612
+ R K+M++ + + V+L + +A + ++M P +
Sbjct: 147 DLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQ 206
Query: 613 LSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAK 661
+ E AE ++ + + + + L + GK V
Sbjct: 207 AACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTN 255
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 727 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.89 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.89 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.88 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.87 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.83 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.83 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.82 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.81 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.8 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.77 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.77 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.76 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.75 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.74 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.74 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.73 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.72 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.7 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.7 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.7 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.69 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.68 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.66 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.66 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.62 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.61 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.59 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.59 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.58 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.55 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.53 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.53 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.52 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.48 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.48 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.47 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.47 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.47 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.47 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.46 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.46 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.45 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.45 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.44 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.44 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.43 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.43 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.42 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.4 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.4 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.4 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.4 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.36 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.36 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.34 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.34 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.31 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.3 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.29 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.28 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.27 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.26 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.26 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.25 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.24 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.24 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.21 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.2 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.19 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.19 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.18 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.09 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.07 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.05 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.04 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.04 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.01 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.01 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.98 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.97 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.96 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.96 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.95 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.94 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.93 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.91 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.9 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.87 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.85 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.84 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.84 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.82 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.79 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.78 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.74 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.74 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.73 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.73 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.73 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.71 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.71 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.7 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.7 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.67 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.65 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.64 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.6 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.59 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.58 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.57 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.57 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.56 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.55 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.54 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.54 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.53 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.53 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.5 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.49 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.49 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.47 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.46 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.46 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.45 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.44 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.43 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.41 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.41 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.4 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.35 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.34 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.33 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.33 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.31 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.3 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.3 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.3 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.29 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.28 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.28 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.28 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.27 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.27 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.26 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.26 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.26 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.25 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.23 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.2 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.2 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.19 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.18 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.17 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.15 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.15 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.14 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.13 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.12 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.11 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.1 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.09 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.08 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.05 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.04 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.04 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.03 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.02 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.02 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.01 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.01 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.98 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.97 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.96 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.96 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.96 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.91 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.88 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.87 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.87 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.86 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.85 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.84 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.77 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.76 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.74 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.67 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.66 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.64 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.59 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.56 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.55 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.48 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.42 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.39 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.38 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.35 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.31 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.28 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.17 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.17 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.1 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.06 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 97.06 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.94 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.86 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.83 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.72 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.57 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.56 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.55 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.46 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.34 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.26 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.12 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.03 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 95.93 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.87 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.6 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.5 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.4 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.26 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.24 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.67 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 93.55 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 93.42 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.25 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 93.21 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 92.71 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 92.45 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 91.94 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 90.64 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 90.21 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 89.93 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 89.39 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 88.65 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 88.11 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 86.75 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 85.84 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 85.8 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 85.04 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 85.02 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 83.72 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 83.37 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 83.34 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 83.27 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 81.53 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 80.76 | |
| 2qx5_A | 661 | Nucleoporin NIC96; mRNA transport, nuclear pore co | 80.72 | |
| 1wdy_A | 285 | 2-5A-dependent ribonuclease; hydrolase, RNA-bindin | 80.32 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-42 Score=384.17 Aligned_cols=499 Identities=9% Similarity=-0.011 Sum_probs=349.8
Q ss_pred HHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCChhHHHH
Q 004856 73 DSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152 (727)
Q Consensus 73 ~~~~~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 152 (727)
..+.+.|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..++.+|...|+++.|..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHH
Confidence 3466788899999999999999999999999999999999999999999985 56788999999999999999999999
Q ss_pred HHHHHHHHcCCCchhHHHHHHHhhhccCCCChhhhhhh-ccC-CCC------------------CcccHHHHHHHHHhCC
Q 004856 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI-QRK-FKD------------------LKSRWNSLISLAVQNG 212 (727)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~li~~y~~~~~g~~~~a~~~-~~~-~~~------------------~~~~~~~li~~~~~~g 212 (727)
+++.+.. .+++..+++.++.+|.++ |++++|..+ +++ +.. +..+|+.++.+|.+.|
T Consensus 139 ~~~~~~~--~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 214 (597)
T 2xpi_A 139 LLTKEDL--YNRSSACRYLAAFCLVKL--YDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLS 214 (597)
T ss_dssp HHHHTCG--GGTCHHHHHHHHHHHHHT--TCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhc--cccchhHHHHHHHHHHHH--hhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcC
Confidence 9998754 367889999999999999 999999999 744 433 4788999999999999
Q ss_pred CchhHHHHHHHHHhCCCCCCh-hhHHHHHHHhcccCChhH--HHHH-HHHHHHhcCCCChhHHhHHHHHhhcCCChHHHH
Q 004856 213 KSEKSFELFKLMRMEGAEFDS-GTLINLLRSTVELKSLEL--GRIV-HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288 (727)
Q Consensus 213 ~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~--a~~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 288 (727)
++++|+++|++|.+.+ |+. ..+..+...+...+..+. +..+ +..+...+......+++.++.+|.+.|++++|.
T Consensus 215 ~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 292 (597)
T 2xpi_A 215 NFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAE 292 (597)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHH
Confidence 9999999999998864 543 344444444433322221 1111 444455555555667788889999999999999
Q ss_pred HHHhcCCC--CCeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCC
Q 004856 289 MLFDKMSD--KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSD 366 (727)
Q Consensus 289 ~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 366 (727)
++|+++.+ ++..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.++.+.|+.++|..+++.+.+.. +
T Consensus 293 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 370 (597)
T 2xpi_A 293 DYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-P 370 (597)
T ss_dssp HHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-c
Confidence 99999987 788999999999999999999999999998764 2255566666666666666666666666665432 3
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004856 367 YQVSVHNSLIDMYCECEDLNCARKIFDSVK---TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILP 443 (727)
Q Consensus 367 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 443 (727)
.+..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+.+
T Consensus 371 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------- 437 (597)
T 2xpi_A 371 EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF------------- 437 (597)
T ss_dssp TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-------------
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------
Confidence 344445555555555555555555554432 1233344444444444444444444444443321
Q ss_pred HHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHH
Q 004856 444 ACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCF 523 (727)
Q Consensus 444 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 523 (727)
+.+..+|+.++.+|.+.|++++|+
T Consensus 438 --------------------------------------------------------~~~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
T 2xpi_A 438 --------------------------------------------------------QGTHLPYLFLGMQHMQLGNILLAN 461 (597)
T ss_dssp --------------------------------------------------------TTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred --------------------------------------------------------ccchHHHHHHHHHHHHcCCHHHHH
Confidence 235566667777777777777777
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc---CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHH
Q 004856 524 KLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESY---GYEPS--QEHYASMVNLLGRAGHMDEARELVK 598 (727)
Q Consensus 524 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~ 598 (727)
++|+++.+.. +.+..+|..++.+|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.++++
T Consensus 462 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 540 (597)
T 2xpi_A 462 EYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540 (597)
T ss_dssp HHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 7777776642 3356677777777777777777777777776532 44666 5678888888888888888888887
Q ss_pred hC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHH
Q 004856 599 DM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYA 651 (727)
Q Consensus 599 ~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 651 (727)
++ ...| +..+|..+...|...|++++|...++++++++|+++.++..++++|.
T Consensus 541 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 541 QGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 76 3334 67788888888999999999999999999999999999999888764
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-41 Score=373.31 Aligned_cols=481 Identities=10% Similarity=-0.007 Sum_probs=402.7
Q ss_pred hhccCCCChhhhhhh-ccCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHH
Q 004856 176 YIKCDGGFENEKGMI-QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRI 254 (727)
Q Consensus 176 y~~~~~g~~~~a~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 254 (727)
+.++ |....+... +.++.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..++.+|.+.|++++|..
T Consensus 63 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 63 TSTD--GSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccc--CccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHH
Confidence 4455 777777787 888888999999999999999999999999999985 46888999999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCCC-------------------CeehHHHHHHHHHhcCCc
Q 004856 255 VHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK-------------------DRVVWNIMISAYYQSGFP 315 (727)
Q Consensus 255 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~ 315 (727)
+++.+... +++..+++.++.+|.++|++++|.++|+++... +..+|+.++.+|.+.|++
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 99988654 678999999999999999999999999965433 378999999999999999
Q ss_pred hHHHHHHHHHHHcCCCCChh-hHHHHHHHhhcCCChHHH--HHH-HHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 004856 316 KESLELLMCMVRSGFRADLF-TAIAAVSSISTMKNIEWG--KQM-HANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391 (727)
Q Consensus 316 ~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a--~~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 391 (727)
++|++.|++|.+.+ |+.. .+..+...+...+..+.. ..+ +..+...+..+...+++.++..|.+.|++++|.++
T Consensus 217 ~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 294 (597)
T 2xpi_A 217 DRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY 294 (597)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 99999999998864 5443 344444333332222111 111 34444444455566778888999999999999999
Q ss_pred HhcCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCch
Q 004856 392 FDSVKT--KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSL 469 (727)
Q Consensus 392 ~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~ 469 (727)
|+++.+ +++.+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.++...|++++|..+++.+.+.. +.+
T Consensus 295 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 372 (597)
T 2xpi_A 295 LSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEK 372 (597)
T ss_dssp HHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTS
T ss_pred HHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-ccc
Confidence 999987 789999999999999999999999999999865 3367788999999999999999999999998765 567
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 004856 470 SSVNTAIFISYAKCGCIEMAGELFDEEKIDS-KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC 548 (727)
Q Consensus 470 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 548 (727)
..+++.++.+|.+.|++++|.++|+++.... .+..+|+.++.+|.+.|++++|+++|+++.+.+ +++..+|..++.+|
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 451 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQH 451 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 8899999999999999999999999865434 468899999999999999999999999999864 44789999999999
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC--HhhHHHHHHHHHHc
Q 004856 549 VNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-------PFKPD--ARVWGPLLSACKMH 619 (727)
Q Consensus 549 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~ll~~~~~~ 619 (727)
.+.|++++|.++|+++.+. .+.+..+|..++..|.+.|++++|.++|+++ +..|+ ..+|..+..+|.+.
T Consensus 452 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 529 (597)
T 2xpi_A 452 MQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh
Confidence 9999999999999999975 3446889999999999999999999999988 44787 67999999999999
Q ss_pred CCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 620 SETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 620 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
|++++|+..++++++.+|+++.+|..++.+|.+.|++++|.++++++.+.
T Consensus 530 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 530 KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp TCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999998876
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.2e-27 Score=248.66 Aligned_cols=186 Identities=15% Similarity=0.154 Sum_probs=175.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC---------hHHHHHHHHHHHHhCCCchHh
Q 004856 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA---------LEHVKYLHGYSMKLGLNSLSS 471 (727)
Q Consensus 401 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 471 (727)
..++.+|.+|++.|+.++|+++|++|.+.|+.||..||+++|.+|+..+. ++.|.++|+.|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45788899999999999999999999999999999999999999987654 688999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 004856 472 VNTAIFISYAKCGCIEMAGELFDEEKID--SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACV 549 (727)
Q Consensus 472 ~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 549 (727)
+|+++|.+|++.|++++|.++|++|... .||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999998643 79999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 004856 550 NAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA 587 (727)
Q Consensus 550 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 587 (727)
+.|++++|.+++++|.+. +..|+..||+.++..|...
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999998 9999999999999998764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=9e-25 Score=228.41 Aligned_cols=375 Identities=13% Similarity=0.068 Sum_probs=257.4
Q ss_pred HHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCC---CCeehHHHHHHHHHhcCCch
Q 004856 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD---KDRVVWNIMISAYYQSGFPK 316 (727)
Q Consensus 240 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 316 (727)
...+.+.|++++|.+.+..+++.. +.+...+..+...+...|++++|...++...+ .+..+|..+...|.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 344556677777777777776654 33445555666666677777777776665432 24556677777777777777
Q ss_pred HHHHHHHHHHHcCCCCC-hhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcC
Q 004856 317 ESLELLMCMVRSGFRAD-LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV 395 (727)
Q Consensus 317 ~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 395 (727)
+|++.|+++... .|+ ..++..+..++...|++++|...+..+++.. +.+..++..+.
T Consensus 85 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~------------------- 142 (388)
T 1w3b_A 85 EAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLG------------------- 142 (388)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHH-------------------
T ss_pred HHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH-------------------
Confidence 777777776653 233 3345555555555555555555555555442 11223334444
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHH
Q 004856 396 KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTA 475 (727)
Q Consensus 396 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 475 (727)
..+...|++++|++.|+++.... +.+..++..+...+...|++++|...++.+.+.. +.+...+..
T Consensus 143 ------------~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 208 (388)
T 1w3b_A 143 ------------NLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYIN 208 (388)
T ss_dssp ------------HHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred ------------HHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHH
Confidence 44444444455555444444431 1123344444445555555555555555554443 233455666
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCC
Q 004856 476 IFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGL 553 (727)
Q Consensus 476 li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~ 553 (727)
+...+...|++++|...|++.....| +..+|..+...|...|++++|++.|+++.+. .| +..+|..+..++.+.|+
T Consensus 209 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~ 286 (388)
T 1w3b_A 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGS 286 (388)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCC
Confidence 66777777778888777776443344 5788899999999999999999999999984 45 57789999999999999
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 004856 554 VEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEK 631 (727)
Q Consensus 554 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~ 631 (727)
+++|...++++.+. .+.+..++..++..+.+.|++++|.+.++++ ...| +..++..+...+.+.|++++|...+++
T Consensus 287 ~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (388)
T 1w3b_A 287 VAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 364 (388)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999875 3556788999999999999999999999988 4555 456888888889999999999999999
Q ss_pred HHccCCCCcchHHHHHHHHHhcCC
Q 004856 632 LISMEPENAGNYVLLSNIYAAAGK 655 (727)
Q Consensus 632 ~~~~~p~~~~~~~~l~~~~~~~g~ 655 (727)
+++++|+++.+|..++.++...|+
T Consensus 365 a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 365 AIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999998887764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=5.7e-24 Score=222.29 Aligned_cols=354 Identities=13% Similarity=0.092 Sum_probs=304.7
Q ss_pred HHHHHhcCCchHHHHHHHHHHHcCCCCCh-hhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 004856 306 ISAYYQSGFPKESLELLMCMVRSGFRADL-FTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECED 384 (727)
Q Consensus 306 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 384 (727)
...+.+.|++++|++.+.++.+. .|+. ..+..+...+...|++++|...+...++.. +.+..++..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 45667889999999999888765 3544 445556667778899999999988888764 5577889999999999999
Q ss_pred HHHHHHHHhcCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcCCChHHHHHHHHH
Q 004856 385 LNCARKIFDSVKT--K-TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF-VTIINILPACVNIGALEHVKYLHGY 460 (727)
Q Consensus 385 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~ 460 (727)
+++|.+.|+++.. | +..+|..+...+.+.|++++|++.|+++... .|+. ..+..+...+...|++++|...+..
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999998753 3 5568999999999999999999999999875 4554 4566777788999999999999999
Q ss_pred HHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-Ch
Q 004856 461 SMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DL 538 (727)
Q Consensus 461 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~ 538 (727)
+.+.. +.+...+..+...|.+.|++++|...|+++....| +...|..+...+...|++++|+..|++.... .| +.
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCH
Confidence 99875 45678889999999999999999999999654445 5678999999999999999999999999884 56 57
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHhhHHHHHHHH
Q 004856 539 ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PF-KPDARVWGPLLSAC 616 (727)
Q Consensus 539 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~ 616 (727)
.++..+..++...|++++|...++++.+. .+.+...|..++..|.+.|++++|.+.++++ .. .++..+|..+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence 88999999999999999999999999864 2334678999999999999999999999998 33 34677899999999
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 617 KMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 617 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
...|++++|+..++++++..|++..++..++.+|.+.|++++|.+.++++.+.
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999998764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.7e-27 Score=248.93 Aligned_cols=213 Identities=11% Similarity=0.023 Sum_probs=169.6
Q ss_pred HHHHHHHHHHHcCCCCCh-hhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcC
Q 004856 317 ESLELLMCMVRSGFRADL-FTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV 395 (727)
Q Consensus 317 ~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 395 (727)
.+..+.+++.+.++.+.. ..++.+|.+|++.|++++|.++|+.|.+.|+.||..+||+||.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 445566667666665443 457778888888888888888888888888888888888888888776643211
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHH
Q 004856 396 KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTA 475 (727)
Q Consensus 396 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 475 (727)
.+.+..++|.++|++|...|+.||..||+++|.+|++.|++++|.++++.|.+.|+.|+..+|++
T Consensus 81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~ 145 (501)
T 4g26_A 81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP 145 (501)
T ss_dssp ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence 23445678888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 004856 476 IFISYAKCGCIEMAGELFDEEKID--SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNA 551 (727)
Q Consensus 476 li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 551 (727)
+|.+|++.|++++|.++|++|... .||..+|++||.+|++.|+.++|.++|++|.+.|+.|+..||+.++..|+..
T Consensus 146 lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 146 ALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999987543 7999999999999999999999999999999999999999999999998764
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.2e-22 Score=217.57 Aligned_cols=439 Identities=10% Similarity=-0.053 Sum_probs=290.9
Q ss_pred cHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhh
Q 004856 200 RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYS 279 (727)
Q Consensus 200 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 279 (727)
.|......+.+.|++++|+..|+++.+.. |+..++..+..++...|++++|...++.+++.+ +.+..++..+..+|.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 35566777888899999999999998865 788888888888888888888888888888875 345566777777777
Q ss_pred cCCChHHHHHHHhcCCCC---CeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHH
Q 004856 280 KLASLEDAKMLFDKMSDK---DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQM 356 (727)
Q Consensus 280 ~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 356 (727)
+.|++++|...|+++... +......++..+........+.+.+..+...+..|+...+..-....
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~------------ 152 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERK------------ 152 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------------------------
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHH------------
Confidence 777777777777765332 22333333433333332333333332222222222222111100000
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-ChhHHHHHHHHHHh---cCChHHHHHHHHHHHH----
Q 004856 357 HANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK-TVVSWSSMIKGYVT---HDQSLEALRLFSEMKL---- 428 (727)
Q Consensus 357 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~---- 428 (727)
......|+...... +.......... ..+..+ +...+......+.. .|++++|+..|+++..
T Consensus 153 ----~~~~~~~~~~~~~~----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 221 (514)
T 2gw1_A 153 ----DKQENLPSVTSMAS----FFGIFKPELTF---ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEE 221 (514)
T ss_dssp --------CCCCHHHHHH----HHTTSCCCCCC---SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHH
T ss_pred ----hhccCCchhHHHHH----HHhhcCHHHHH---HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhh
Confidence 00001111111110 11000000000 001111 23344444444444 7888888888888776
Q ss_pred -CCCC--------CCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 004856 429 -EGVE--------VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499 (727)
Q Consensus 429 -~g~~--------p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 499 (727)
.... .+..++..+...+...|++++|..++..+.+.... ...+..+...|...|++++|...+++....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 299 (514)
T 2gw1_A 222 QLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKL 299 (514)
T ss_dssp HTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT
T ss_pred hhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc
Confidence 3111 12345666777788888888888888888776644 777788888888889998888888885544
Q ss_pred CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHH
Q 004856 500 SK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYA 578 (727)
Q Consensus 500 ~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 578 (727)
.| +...|..+...|...|++++|+..+++..+.. +.+..++..+...+...|++++|...++.+.+. .+.+...+.
T Consensus 300 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~ 376 (514)
T 2gw1_A 300 DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPN 376 (514)
T ss_dssp CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHH
T ss_pred CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHH
Confidence 44 66788888889999999999999999988853 235678888888899999999999999988865 233567888
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-C---CCCC----HhhHHHHHHHHHH---cCCHHHHHHHHHHHHccCCCCcchHHHHH
Q 004856 579 SMVNLLGRAGHMDEARELVKDM-P---FKPD----ARVWGPLLSACKM---HSETELAELTAEKLISMEPENAGNYVLLS 647 (727)
Q Consensus 579 ~li~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~ll~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 647 (727)
.+...|.+.|++++|.+.++++ . ..|+ ...|..+...+.. .|++++|...++++++..|+++.++..++
T Consensus 377 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 456 (514)
T 2gw1_A 377 FFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLA 456 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 8889999999999999998877 2 2222 2377788888888 89999999999999999998888999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 004856 648 NIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 648 ~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
.+|...|++++|.+.+++..+.
T Consensus 457 ~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 457 QMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHh
Confidence 9999999999999999888766
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-20 Score=206.77 Aligned_cols=422 Identities=9% Similarity=0.008 Sum_probs=246.1
Q ss_pred ccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHh
Q 004856 199 SRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMY 278 (727)
Q Consensus 199 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 278 (727)
..|..+...+.+.|++++|++.|+++.+.. +.+...+..+..++...|++++|.+.++.+++.+ +.+..++..+...|
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 347777888999999999999999998764 3466788888888899999999999999998876 44677778888888
Q ss_pred hcCCChHHHHHHHhcCCCCCeehHHHHHHHHHhcCCchHHHHHHHHHHHcC------CCCChhhHHHHHHHhhcCCChHH
Q 004856 279 SKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG------FRADLFTAIAAVSSISTMKNIEW 352 (727)
Q Consensus 279 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~~~ 352 (727)
.+.|++++|...|+.+ ..+....+..+..+...+...+|...++++.... ..|+...
T Consensus 104 ~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~---------------- 166 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTS---------------- 166 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHH----------------
T ss_pred HHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhH----------------
Confidence 8888888888888644 2233333334445555666677777777774421 1222222
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChh---HHHHHHHHHHh--------cCChHHHHH
Q 004856 353 GKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVV---SWSSMIKGYVT--------HDQSLEALR 421 (727)
Q Consensus 353 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~--------~g~~~~A~~ 421 (727)
+..|....+.+.+...+......+.. .+..+...+.. .|++++|+.
T Consensus 167 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~ 223 (537)
T 3fp2_A 167 -----------------------LASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTD 223 (537)
T ss_dssp -----------------------HHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 22233334444444444433333221 22222222111 134555555
Q ss_pred HHHHHHHCCCCCC--------HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHH
Q 004856 422 LFSEMKLEGVEVD--------FVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELF 493 (727)
Q Consensus 422 ~~~~m~~~g~~p~--------~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 493 (727)
+|+++.+. .|+ ..++..+...+...|++++|...+..+.+... +...+..+...|...|++++|...|
T Consensus 224 ~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~ 299 (537)
T 3fp2_A 224 MYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP--TPNSYIFLALTLADKENSQEFFKFF 299 (537)
T ss_dssp HHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CHHHHHHHHHHTCCSSCCHHHHHHH
T ss_pred HHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHhcCHHHHHHHH
Confidence 55555543 222 11233344445555566666666655555432 2445555555666666666666666
Q ss_pred HhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC
Q 004856 494 DEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP 572 (727)
Q Consensus 494 ~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 572 (727)
++.....| +...|..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|...++.+.+. .+.
T Consensus 300 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~ 376 (537)
T 3fp2_A 300 QKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPT 376 (537)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred HHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Confidence 65332222 45566666666666677777777766666632 223556666666666667777777776666654 223
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC---CC----CHhhHHHHHHHHHHc----------CCHHHHHHHHHHHHc
Q 004856 573 SQEHYASMVNLLGRAGHMDEARELVKDM-PF---KP----DARVWGPLLSACKMH----------SETELAELTAEKLIS 634 (727)
Q Consensus 573 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~---~p----~~~~~~~ll~~~~~~----------g~~~~A~~~~~~~~~ 634 (727)
+...+..+...+.+.|++++|.+.++++ .. .+ ....+..+...+... |++++|+..++++++
T Consensus 377 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 456 (537)
T 3fp2_A 377 LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE 456 (537)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH
Confidence 3456666666666677777776666665 11 11 111122233345555 677777777777777
Q ss_pred cCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 635 MEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 635 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
.+|++..++..++.+|...|++++|.+.+++..+.
T Consensus 457 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 457 LDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 77766777777777777777777777777666554
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-20 Score=198.90 Aligned_cols=337 Identities=11% Similarity=0.042 Sum_probs=228.3
Q ss_pred CeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 004856 298 DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLID 377 (727)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 377 (727)
+...|..+...+.+.|++++|+.+|+++.... +.+...+..+..++...|++++|...++.+++.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 34455666666666666666666666665531 2244455555555555566666666555555543 223445556666
Q ss_pred HHHhcCCHHHHHHHHhcCCCCC---h---hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCh
Q 004856 378 MYCECEDLNCARKIFDSVKTKT---V---VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451 (727)
Q Consensus 378 ~~~~~g~~~~A~~~~~~~~~~~---~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 451 (727)
.|.+.|++++|.+.|+++.+.+ . ..|..++..+... .+..+...+...|++
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSGDY 159 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHTCH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcCCH
Confidence 6666666666666666554322 2 3444443321110 011112234445555
Q ss_pred HHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004856 452 EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID-SKDIITWNSMISAYAKHGDWSQCFKLYTQMK 530 (727)
Q Consensus 452 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 530 (727)
++|...+..+.+.. +.+..++..+..+|.+.|++++|...|+++... +.+...|..+...|...|++++|+..|+++.
T Consensus 160 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 160 TAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555555443 345566677777788888888888888775432 3467889999999999999999999999998
Q ss_pred HCCCCCC-hHHHHHH------------HHHHHhcCCHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCCHHH
Q 004856 531 QSDVRPD-LITFLGL------------LTACVNAGLVEEGRIIFKEMKESYGYEPS-----QEHYASMVNLLGRAGHMDE 592 (727)
Q Consensus 531 ~~g~~p~-~~t~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~ 592 (727)
+ ..|+ ...+..+ ..+|.+.|++++|..+|+.+.+. .|+ ..++..++..+.+.|++++
T Consensus 239 ~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~ 313 (450)
T 2y4t_A 239 K--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVE 313 (450)
T ss_dssp H--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred H--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHH
Confidence 7 4564 3444444 78899999999999999999865 344 4578899999999999999
Q ss_pred HHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHH------------HHhcC----
Q 004856 593 ARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNI------------YAAAG---- 654 (727)
Q Consensus 593 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~------------~~~~g---- 654 (727)
|.+.++++ ...| +...|..+..+|...|++++|+..++++++++|+++.++..++.+ |...|
T Consensus 314 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~ 393 (450)
T 2y4t_A 314 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRN 393 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCcc
Confidence 99999987 4445 577899999999999999999999999999999999999988844 55555
Q ss_pred -ChhHHHHHHHH
Q 004856 655 -KWNGVAKMRTF 665 (727)
Q Consensus 655 -~~~~a~~~~~~ 665 (727)
+.+++.+.+++
T Consensus 394 ~~~~~~~~~y~~ 405 (450)
T 2y4t_A 394 AKKQEIIKAYRK 405 (450)
T ss_dssp CCTTHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 45566666665
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-20 Score=204.19 Aligned_cols=449 Identities=10% Similarity=-0.002 Sum_probs=255.3
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHHcCCCchhHHHHHHHhhh
Q 004856 98 LYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYI 177 (727)
Q Consensus 98 ~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 177 (727)
.|......+.+.|++++|+..|+++.... |+..++..+..++...|+++.|...++.+++...
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------------- 70 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP--------------- 70 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS---------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh---------------
Confidence 45566677777888888888888877754 6777777777777777888887777777776541
Q ss_pred ccCCCChhhhhhhccCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHH
Q 004856 178 KCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHC 257 (727)
Q Consensus 178 ~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 257 (727)
.+...|..+...|.+.|++++|+..|+++...+ +++......++..+........+.+.+.
T Consensus 71 ------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 131 (514)
T 2gw1_A 71 ------------------DYSKVLLRRASANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFG 131 (514)
T ss_dssp ------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC--
T ss_pred ------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 122335556666777788888888888887765 2344444444443333222222222222
Q ss_pred HHHHhcCCCChhHHhHH---HHHhhcCCChHHHHHHHhcCCC---------C-CeehHHHHHHHHHh---cCCchHHHHH
Q 004856 258 VAVVSDFCKDLSVNTAL---LSMYSKLASLEDAKMLFDKMSD---------K-DRVVWNIMISAYYQ---SGFPKESLEL 321 (727)
Q Consensus 258 ~~~~~g~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~~~~---------~-~~~~~~~li~~~~~---~g~~~~A~~~ 321 (727)
.+...+..++....+.- ............+...+..... + +...+......+.. .|++++|+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 211 (514)
T 2gw1_A 132 DIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADES 211 (514)
T ss_dssp -------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHH
T ss_pred HHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHH
Confidence 22111111111000000 0000000111111111111110 1 12223333333332 5556666666
Q ss_pred HHHHHH-----cCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 004856 322 LMCMVR-----SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK 396 (727)
Q Consensus 322 ~~~m~~-----~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 396 (727)
|+++.. ..-.|+.... .+.+..++..+...|...|++++|...|+.+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 264 (514)
T 2gw1_A 212 FTKAARLFEEQLDKNNEDEKL---------------------------KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAI 264 (514)
T ss_dssp HHHHHHHHHHHTTTSTTCHHH---------------------------HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhccCcccccc---------------------------ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 665554 2111211100 01123456667777777788888777777654
Q ss_pred C--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHH
Q 004856 397 T--KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNT 474 (727)
Q Consensus 397 ~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 474 (727)
+ ++...|..+...|...|++++|+..|+++.... +.+...+..+.
T Consensus 265 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~-------------------------------- 311 (514)
T 2gw1_A 265 ELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRG-------------------------------- 311 (514)
T ss_dssp HHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHH--------------------------------
T ss_pred hhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHH--------------------------------
Confidence 2 236677778888888888888888888877642 11233333333
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 004856 475 AIFISYAKCGCIEMAGELFDEEKID-SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL 553 (727)
Q Consensus 475 ~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 553 (727)
..|...|++++|...|++.... +.+...|..+...|...|++++|+..++++.+.. +.+..++..+...+...|+
T Consensus 312 ---~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 387 (514)
T 2gw1_A 312 ---QMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKND 387 (514)
T ss_dssp ---HHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTC
T ss_pred ---HHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCC
Confidence 3444444444444444443221 2245566677777777777777777777777642 2246677777777778888
Q ss_pred HHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHh---cCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHH
Q 004856 554 VEEGRIIFKEMKESYGYEPS----QEHYASMVNLLGR---AGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETEL 624 (727)
Q Consensus 554 ~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 624 (727)
+++|...++.+.+...-.++ ...+..+...+.+ .|++++|.+.++++ ...| +..+|..+...+...|++++
T Consensus 388 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 467 (514)
T 2gw1_A 388 FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDE 467 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHH
Confidence 88888888777654222222 3367777788888 88888888888776 3334 45567777777888888888
Q ss_pred HHHHHHHHHccCCCCcchHHHH
Q 004856 625 AELTAEKLISMEPENAGNYVLL 646 (727)
Q Consensus 625 A~~~~~~~~~~~p~~~~~~~~l 646 (727)
|...++++++++|+++..+..+
T Consensus 468 A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 468 AITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHhccccHHHHHHH
Confidence 9888888888888777666555
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-19 Score=193.53 Aligned_cols=306 Identities=9% Similarity=0.013 Sum_probs=218.8
Q ss_pred hhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHH
Q 004856 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT---KTVVSWSSMIKGY 410 (727)
Q Consensus 334 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 410 (727)
...+..+...+.+.|++++|..+++.+++.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...|
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 3445555555555555555555555555442 23344555555555555555555555554432 2344555555555
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCH
Q 004856 411 VTHDQSLEALRLFSEMKLEGVEVDF----VTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCI 486 (727)
Q Consensus 411 ~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 486 (727)
.+.|++++|+..|+++... .|+. ..+..+...+.. ..+..+...|.+.|++
T Consensus 105 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSGDY 159 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTCH
T ss_pred HHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcCCH
Confidence 5555555555555555543 2322 222222222110 1122334568899999
Q ss_pred HHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 004856 487 EMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMK 565 (727)
Q Consensus 487 ~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 565 (727)
++|...|+++....| +...+..+...|.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|...++.+.
T Consensus 160 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 160 TAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999998654344 77899999999999999999999999998853 4468899999999999999999999999998
Q ss_pred HhcCCCCC-hhHHHHH------------HHHHHhcCCHHHHHHHHHhC-CCCCC-----HhhHHHHHHHHHHcCCHHHHH
Q 004856 566 ESYGYEPS-QEHYASM------------VNLLGRAGHMDEARELVKDM-PFKPD-----ARVWGPLLSACKMHSETELAE 626 (727)
Q Consensus 566 ~~~~~~p~-~~~~~~l------------i~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~ll~~~~~~g~~~~A~ 626 (727)
.. .|+ ...+..+ +..+.+.|++++|.+.++++ ...|+ ...|..+...+.+.|++++|+
T Consensus 239 ~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~ 315 (450)
T 2y4t_A 239 KL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAI 315 (450)
T ss_dssp HH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred Hh---CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 64 444 4445444 88999999999999999988 44454 346777888899999999999
Q ss_pred HHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 627 LTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 627 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
..++++++..|+++.++..++.+|...|++++|.+.++++.+.
T Consensus 316 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 316 RVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999998775
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-18 Score=189.95 Aligned_cols=410 Identities=9% Similarity=-0.002 Sum_probs=282.9
Q ss_pred CcccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHH
Q 004856 197 LKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLS 276 (727)
Q Consensus 197 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 276 (727)
+...|..+...|.+.|++++|++.|++..+.. +.+..++..+..++...|++++|...++ .+... |+ ..+..+.
T Consensus 58 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~--~~--~~~~~~~ 131 (537)
T 3fp2_A 58 EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLS-VLSLN--GD--FDGASIE 131 (537)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC---------------
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcC--CC--CChHHHH
Confidence 34456667777777888888888888887754 3355677778888888888888888885 33322 22 1122344
Q ss_pred HhhcCCChHHHHHHHhcCCCC------CeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCCh
Q 004856 277 MYSKLASLEDAKMLFDKMSDK------DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNI 350 (727)
Q Consensus 277 ~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 350 (727)
.+...+....|...++.+... .....+..+..+....+.+.+...+..... ..+....+...+.......
T Consensus 132 ~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~-- 207 (537)
T 3fp2_A 132 PMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSN--YDTAYALLSDALQRLYSAT-- 207 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCS--SCSSHHHHHHHHHHHHTCS--
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccc--cccHHHHHHHHHHHHHHhh--
Confidence 445555667788888877542 222334555666666666655544433221 1111111111111110000
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC----------hhHHHHHHHHHHhcCChHHHH
Q 004856 351 EWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKT----------VVSWSSMIKGYVTHDQSLEAL 420 (727)
Q Consensus 351 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----------~~~~~~li~~~~~~g~~~~A~ 420 (727)
.-......|++++|..+|+.+.+.+ ..+|..+...+...|++++|+
T Consensus 208 ------------------------~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 263 (537)
T 3fp2_A 208 ------------------------DEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQ 263 (537)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ------------------------hhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHH
Confidence 0001112345666666666655432 124666677888899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCC
Q 004856 421 RLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDS 500 (727)
Q Consensus 421 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 500 (727)
..|++.... .|+...+..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|...|++.....
T Consensus 264 ~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 340 (537)
T 3fp2_A 264 VLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340 (537)
T ss_dssp HHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 999999885 4667788888889999999999999999988876 4467788889999999999999999999855434
Q ss_pred C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----hh
Q 004856 501 K-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS----QE 575 (727)
Q Consensus 501 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 575 (727)
| +...|..+...|...|++++|++.++++.+.. +.+...+..+...+...|++++|...++.+.+...-.++ ..
T Consensus 341 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 419 (537)
T 3fp2_A 341 PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIG 419 (537)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHH
Confidence 4 56789999999999999999999999999853 335778999999999999999999999998765211111 22
Q ss_pred HHHHHHHHHHhc----------CCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchH
Q 004856 576 HYASMVNLLGRA----------GHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNY 643 (727)
Q Consensus 576 ~~~~li~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 643 (727)
.+..+...|.+. |++++|...++++ ...| +...|..+...+...|++++|...+++++++.|.+....
T Consensus 420 ~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 499 (537)
T 3fp2_A 420 PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL 499 (537)
T ss_dssp HHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHH
T ss_pred HHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 345556777787 9999999999988 3344 566888888889999999999999999999999776654
Q ss_pred H
Q 004856 644 V 644 (727)
Q Consensus 644 ~ 644 (727)
.
T Consensus 500 ~ 500 (537)
T 3fp2_A 500 Q 500 (537)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-17 Score=170.51 Aligned_cols=306 Identities=9% Similarity=-0.002 Sum_probs=211.8
Q ss_pred hhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHH
Q 004856 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT---KTVVSWSSMIKGY 410 (727)
Q Consensus 334 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 410 (727)
...+..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|...|++..+ .+...|..+...|
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 3445556666667777777777777776654 33455666667777777777777777766542 2445666667777
Q ss_pred HhcCChHHHHHHHHHHHHCCCCC---CHH-HHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCH
Q 004856 411 VTHDQSLEALRLFSEMKLEGVEV---DFV-TIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCI 486 (727)
Q Consensus 411 ~~~g~~~~A~~~~~~m~~~g~~p---~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 486 (727)
...|++++|+..|++..+. .| +.. .+..+.... ....+..+...+...|++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-----------------------~~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-----------------------EMQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHTTCH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHccCH
Confidence 7777777777777776654 33 221 111111000 001122335667788888
Q ss_pred HHHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 004856 487 EMAGELFDEEKIDS-KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMK 565 (727)
Q Consensus 487 ~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 565 (727)
++|...|++..... .+...|..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++.+.
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888888754333 366778888888888888888888888888742 3367788888888888888888888888887
Q ss_pred HhcCCCCC-hhHHH------------HHHHHHHhcCCHHHHHHHHHhC-CCCCCHh-----hHHHHHHHHHHcCCHHHHH
Q 004856 566 ESYGYEPS-QEHYA------------SMVNLLGRAGHMDEARELVKDM-PFKPDAR-----VWGPLLSACKMHSETELAE 626 (727)
Q Consensus 566 ~~~~~~p~-~~~~~------------~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-----~~~~ll~~~~~~g~~~~A~ 626 (727)
+. .|+ ...+. .+...+.+.|++++|.+.++++ ...|+.. .+..+...+...|++++|.
T Consensus 216 ~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 216 KL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 64 233 33322 2366688889999999988887 3334322 2344556688899999999
Q ss_pred HHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 627 LTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 627 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
..++++++.+|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999999988899999999999999999999999887765
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.82 E-value=6.3e-15 Score=165.35 Aligned_cols=315 Identities=14% Similarity=0.108 Sum_probs=237.1
Q ss_pred CeehHHHHHHHHHhcCCchHHHHHHHHHHHcCC--CCChhhHHHHH---------------------------HHhhcCC
Q 004856 298 DRVVWNIMISAYYQSGFPKESLELLMCMVRSGF--RADLFTAIAAV---------------------------SSISTMK 348 (727)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll---------------------------~~~~~~~ 348 (727)
|+.--...+.+|...|.+.+|++++++....+- .-+...-+.++ ..+...|
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNE 1063 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCC
Confidence 444445667777788888888888887763311 00111122222 3344566
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004856 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKL 428 (727)
Q Consensus 349 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 428 (727)
.+++|..+|+... ......+.+ +-..|++++|.++.+++ .+..+|..+..++...|++++|++.|.+.
T Consensus 1064 lyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA-- 1131 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-- 1131 (1630)
T ss_pred CHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--
Confidence 6666766666541 111111222 22667777777777766 34678889999999999999999999663
Q ss_pred CCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHH
Q 004856 429 EGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNS 508 (727)
Q Consensus 429 ~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 508 (727)
-|...|..++.+|.+.|+++++.+++.+.++.. +++.+.+.++.+|++.+++++...+. . .++...|..
T Consensus 1132 ----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~--~~n~ad~~~ 1200 (1630)
T 1xi4_A 1132 ----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---N--GPNNAHIQQ 1200 (1630)
T ss_pred ----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---h--CCCHHHHHH
Confidence 467788889999999999999999999888765 44444556889999999999755553 2 567778888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 004856 509 MISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG 588 (727)
Q Consensus 509 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 588 (727)
+...|...|++++|...|... ..|..+..++.+.|++++|.+.+++.. +..+|..+..+|...|
T Consensus 1201 iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~ 1264 (1630)
T 1xi4_A 1201 VGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGK 1264 (1630)
T ss_pred HHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhh
Confidence 999999999999999999984 378999999999999999999988663 5578888899999999
Q ss_pred CHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhc
Q 004856 589 HMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAA 653 (727)
Q Consensus 589 ~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 653 (727)
++..|....... ..+...+..++..|...|.+++|+.++++.+.++|.+...|..|+.+|.+.
T Consensus 1265 Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1265 EFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC
Confidence 999999888754 344556668888899999999999999999999998888888887777765
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.9e-17 Score=166.70 Aligned_cols=324 Identities=9% Similarity=0.006 Sum_probs=245.4
Q ss_pred eehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 004856 299 RVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDM 378 (727)
Q Consensus 299 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 378 (727)
+..|..+...+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+++.. +.+..++..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 4567888899999999999999999998763 3356788888899999999999999999999875 4466789999999
Q ss_pred HHhcCCHHHHHHHHhcCCCCCh------hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChH
Q 004856 379 YCECEDLNCARKIFDSVKTKTV------VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452 (727)
Q Consensus 379 ~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 452 (727)
|...|++++|...|+...+.++ ..+..+...+. ...+......+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 9999999999999998865433 33333321100 011222333445555555
Q ss_pred HHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004856 453 HVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQ 531 (727)
Q Consensus 453 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 531 (727)
+|...+..+.+.. +.+...+..+...|...|++++|...+++.....| +...|..+...+...|++++|...+++..+
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555555543 33455666777778888888888888887554444 677888888899999999999999999887
Q ss_pred CCCCCC-hHHHH------------HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-h----hHHHHHHHHHHhcCCHHHH
Q 004856 532 SDVRPD-LITFL------------GLLTACVNAGLVEEGRIIFKEMKESYGYEPS-Q----EHYASMVNLLGRAGHMDEA 593 (727)
Q Consensus 532 ~g~~p~-~~t~~------------~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~----~~~~~li~~~~~~g~~~~A 593 (727)
. .|+ ...+. .+...+...|++++|...++.+.+. .|+ . ..+..+...+.+.|++++|
T Consensus 217 ~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 217 L--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp H--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred h--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 4 454 33332 2366688999999999999999875 233 2 2355688899999999999
Q ss_pred HHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhc
Q 004856 594 RELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAA 653 (727)
Q Consensus 594 ~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 653 (727)
.+.+++. ...| +...|..+...+...|++++|...++++++++|++..++..+..++...
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 292 IRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 9999988 3345 6678888888899999999999999999999999998888887776543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.80 E-value=6.6e-14 Score=157.23 Aligned_cols=402 Identities=10% Similarity=0.030 Sum_probs=248.4
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHhcCC-CCC-----cchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHH
Q 004856 65 LILSSNLIDSYANLGLLSLSQQVFNSIT-SPN-----SLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVI 138 (727)
Q Consensus 65 ~~~~~~li~~~~~~g~~~~A~~~f~~~~-~~~-----~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 138 (727)
+.--+..++.|...|.+.+|.++++++. +|+ ....|.++....+. +..+..+..++.. .+....+.
T Consensus 985 PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd-------~~d~~eIA 1056 (1630)
T 1xi4_A 985 PEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD-------NYDAPDIA 1056 (1630)
T ss_pred HHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh-------hccHHHHH
Confidence 3334556677777777777777777654 222 23455566655555 4455555544433 12233455
Q ss_pred HHhhccCChhHHHHHHHHHHHHcCCCchhHHHHHHHhhhccCCCChhhhhhh-ccCCCCCcccHHHHHHHHHhCCCchhH
Q 004856 139 RSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI-QRKFKDLKSRWNSLISLAVQNGKSEKS 217 (727)
Q Consensus 139 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~~~g~~~~a~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A 217 (727)
..|...|.+++|.++++... ......+.++. .. |.+++|... ++.. +..+|..+..++.+.|++++|
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i--~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HI--GNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HH--hhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHH
Confidence 66667777777777777641 22222333432 33 777777777 6553 345577888888888888888
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCCC
Q 004856 218 FELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK 297 (727)
Q Consensus 218 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 297 (727)
++.|.+. -|...|..++.+|.+.|+++++.+.+....+.. +++.+.+.++..|++.+++++..... ..+
T Consensus 1125 IdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~ 1193 (1630)
T 1xi4_A 1125 IDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGP 1193 (1630)
T ss_pred HHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCC
Confidence 8887553 366677778888888888888888887777654 33334445777788887777544443 344
Q ss_pred CeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 004856 298 DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLID 377 (727)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 377 (727)
+...|..+...|...|++++|..+|... ..|..+..++.+.|+++.|.+.++.. .+..+|..+..
T Consensus 1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~ 1258 (1630)
T 1xi4_A 1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCF 1258 (1630)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHH
Confidence 5566667777778888888888888774 36777788888888888887777765 34566777777
Q ss_pred HHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHH--HHHHhcCCChHHH
Q 004856 378 MYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF-VTIINI--LPACVNIGALEHV 454 (727)
Q Consensus 378 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l--l~a~~~~~~~~~a 454 (727)
++...|++..|...... ...++..+..++..|.+.|.+++|+.+++..... .+.. ..|+-+ +.+-.+.+++.+.
T Consensus 1259 acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L--eraH~gmftELaiLyaKy~peklmEh 1335 (1630)
T 1xi4_A 1259 ACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREH 1335 (1630)
T ss_pred HHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--ChhHhHHHHHHHHHHHhCCHHHHHHH
Confidence 77777888887777664 3334555667777888888888888888666543 2322 233223 3333333444444
Q ss_pred HHHHHHHHHhCCC------chHhHHHHHHHHHHhcCCHHHHHHHHHhc-------------cCCCCCHHHHHHHHHHHHH
Q 004856 455 KYLHGYSMKLGLN------SLSSVNTAIFISYAKCGCIEMAGELFDEE-------------KIDSKDIITWNSMISAYAK 515 (727)
Q Consensus 455 ~~~~~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------------~~~~~~~~~~~~li~~~~~ 515 (727)
.++|.. +..++ .+...|.-++..|.+.|+++.|....-+- .....|+..|...+.-|..
T Consensus 1336 lk~f~~--rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~ 1413 (1630)
T 1xi4_A 1336 LELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLE 1413 (1630)
T ss_pred HHHHHH--hcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHh
Confidence 444332 22222 24566777777888888888777333221 1113455566666666654
Q ss_pred cC
Q 004856 516 HG 517 (727)
Q Consensus 516 ~g 517 (727)
..
T Consensus 1414 ~~ 1415 (1630)
T 1xi4_A 1414 FK 1415 (1630)
T ss_pred hC
Confidence 43
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=7.1e-17 Score=164.04 Aligned_cols=289 Identities=12% Similarity=0.036 Sum_probs=218.2
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004856 366 DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK---TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINIL 442 (727)
Q Consensus 366 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 442 (727)
+.+..++..+...+...|++++|.++|+++.+. +...+..++..+...|++++|+.+++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 445556666777777777888887777776432 44556667777777888888888888877642 22455666677
Q ss_pred HHHhcCC-ChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChH
Q 004856 443 PACVNIG-ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWS 520 (727)
Q Consensus 443 ~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~ 520 (727)
..+...| ++++|...+..+.+.. +.+...+..+...|...|++++|...|++.....| +...|..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 7777777 7888888887777654 34566777888888888999999888888543334 4567777888899999999
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC-------CCCChhHHHHHHHHHHhcCCHHHH
Q 004856 521 QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYG-------YEPSQEHYASMVNLLGRAGHMDEA 593 (727)
Q Consensus 521 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A 593 (727)
+|++.+++..+.. +.+...+..+...+...|++++|...++++.+... .+.....+..+...|.+.|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999988743 33577888889999999999999999998876421 133356888899999999999999
Q ss_pred HHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHH-HhcCChh
Q 004856 594 RELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIY-AAAGKWN 657 (727)
Q Consensus 594 ~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 657 (727)
.+.++++ ...| +...|..+...+...|++++|...++++++++|+++.++..++.++ ...|+.+
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999887 3334 4567888888899999999999999999999999999999999888 4555543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.6e-17 Score=166.01 Aligned_cols=281 Identities=12% Similarity=0.045 Sum_probs=117.4
Q ss_pred ccCChhHHHHHHhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCChhHHHHHHHH
Q 004856 77 NLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQ 156 (727)
Q Consensus 77 ~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 156 (727)
+.|++++|.+.+++++.|+ +|..|..++.+.|++++|++.|.+. +|..+|..++.+|...|++++|...+..
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6788999999999998775 8999999999999999999999763 6888999999999999999999998887
Q ss_pred HHHHcCCCchhHHHHHHHhhhccCCCChhhhhhh-ccCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhh
Q 004856 157 VVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI-QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGT 235 (727)
Q Consensus 157 ~~~~~~~~~~~~~~~li~~y~~~~~g~~~~a~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 235 (727)
..+. .+++.+.+.|+.+|.++ |+++++.++ +. |+..+|+.+...|...|++++|...|..+ ..
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Kl--g~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n 150 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKT--NRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SN 150 (449)
T ss_dssp --------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TC
T ss_pred HHHh--CccchhHHHHHHHHHHh--CCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hh
Confidence 7774 45688899999999999 999999988 53 67779999999999999999999999977 47
Q ss_pred HHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCCCCeehHHHHHHHHHhcCCc
Q 004856 236 LINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFP 315 (727)
Q Consensus 236 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 315 (727)
|..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++
T Consensus 151 ~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 151 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCH
Confidence 888999999999999999888877 378888999999999999999987777655 4444455688888889999
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHhhc--CCChHHHHHHHHHHHHhCCCC------ChhHHHHHHHHHHhcCCHHH
Q 004856 316 KESLELLMCMVRSGFRADLFTAIAAVSSIST--MKNIEWGKQMHANVLRNGSDY------QVSVHNSLIDMYCECEDLNC 387 (727)
Q Consensus 316 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~g~~~------~~~~~~~li~~~~~~g~~~~ 387 (727)
++|+.+++...... +.-...|+-+--.+++ .+++.+..+.|.. +..++| +..+|..++-.|.+.++++.
T Consensus 224 eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 224 EELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp HHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 99988888876432 2223334433333332 3333344333321 112222 34456666666666666666
Q ss_pred HHHH
Q 004856 388 ARKI 391 (727)
Q Consensus 388 A~~~ 391 (727)
|...
T Consensus 301 A~~t 304 (449)
T 1b89_A 301 AIIT 304 (449)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.5e-17 Score=166.15 Aligned_cols=282 Identities=9% Similarity=0.026 Sum_probs=113.7
Q ss_pred CChhhhhhh-ccCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHH
Q 004856 182 GFENEKGMI-QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260 (727)
Q Consensus 182 g~~~~a~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 260 (727)
|++++|... ++.+.|+ .|..+..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..++....
T Consensus 17 ~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ar 88 (449)
T 1b89_A 17 GNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMAR 88 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 889999999 8886664 899999999999999999999975 3688899999999999999999999888887
Q ss_pred HhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCCCCeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHH
Q 004856 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAA 340 (727)
Q Consensus 261 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 340 (727)
+. .+++.+.+.|+.+|.+.|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|..+
T Consensus 89 k~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~L 154 (449)
T 1b89_A 89 KK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRL 154 (449)
T ss_dssp ----------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHHH
T ss_pred Hh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHH
Confidence 74 45678899999999999999999988864 67789999999999999999999999976 478888
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHH
Q 004856 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEAL 420 (727)
Q Consensus 341 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 420 (727)
..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++++|+
T Consensus 155 A~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai 227 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELI 227 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHH
Confidence 88888888888888888776 367778888888888888888877766654 44444456778888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhc--CCChHHHHHHHHHHHHhCCCc------hHhHHHHHHHHHHhcCCHHHHHHH
Q 004856 421 RLFSEMKLEGVEVDFVTIINILPACVN--IGALEHVKYLHGYSMKLGLNS------LSSVNTAIFISYAKCGCIEMAGEL 492 (727)
Q Consensus 421 ~~~~~m~~~g~~p~~~t~~~ll~a~~~--~~~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~ 492 (727)
.+++...... +--...|+-+.-++++ .+++.+..+.|. .+..+++ +...|..++..|.+.++++.|...
T Consensus 228 ~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~--~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 228 TMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW--SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS--TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 8888776443 2223333333333332 233333333322 1122222 234455555666666666655554
Q ss_pred HHh
Q 004856 493 FDE 495 (727)
Q Consensus 493 ~~~ 495 (727)
.-+
T Consensus 305 m~~ 307 (449)
T 1b89_A 305 MMN 307 (449)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.77 E-value=2e-15 Score=162.38 Aligned_cols=366 Identities=11% Similarity=0.011 Sum_probs=268.5
Q ss_pred ChhHHhHHHHHhhc----CCChHHHHHHHhcCCC-CCeehHHHHHHHHHh----cCCchHHHHHHHHHHHcCCCCChhhH
Q 004856 267 DLSVNTALLSMYSK----LASLEDAKMLFDKMSD-KDRVVWNIMISAYYQ----SGFPKESLELLMCMVRSGFRADLFTA 337 (727)
Q Consensus 267 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 337 (727)
++..+..|...|.. .+++++|...|++..+ .+...+..|...|.. .+++++|++.|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 44445555555554 5666667666665533 355566666666666 677777777777776654 34444
Q ss_pred HHHHHHhhc----CCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCCHHHHHHHHhcCCC-CChhHHHHHHH
Q 004856 338 IAAVSSIST----MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCE----CEDLNCARKIFDSVKT-KTVVSWSSMIK 408 (727)
Q Consensus 338 ~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~ 408 (727)
..+-..+.. .++.++|...++...+.| +...+..|..+|.. .+++++|.+.|++..+ .+..++..+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 445555554 667777777777777665 45556677777776 6788888888876554 36677777888
Q ss_pred HHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----CCChHHHHHHHHHHHHhCCCchHhHHHHHHHHH
Q 004856 409 GYVT----HDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN----IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISY 480 (727)
Q Consensus 409 ~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 480 (727)
.|.. .++.++|+..|++..+.| +...+..+...+.. .++.++|..++....+.+ +...+..+..+|
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 265 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYIL 265 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 8877 788889999998888764 44556666666654 778889998888888765 344556666677
Q ss_pred Hh----cCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 004856 481 AK----CGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH-----GDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNA 551 (727)
Q Consensus 481 ~~----~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 551 (727)
.. .++.++|...|++... ..+...+..+...|... +++++|+..|++..+.| +...+..+...|...
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~-~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~ 341 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAE-QGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRL 341 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHS
T ss_pred HCCCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Confidence 77 8999999999998653 34667777888888887 89999999999999865 456777788888776
Q ss_pred C---CHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cC
Q 004856 552 G---LVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR----AGHMDEARELVKDMPFKPDARVWGPLLSACKM----HS 620 (727)
Q Consensus 552 g---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g 620 (727)
| +.++|.++|++..+. .+...+..|...|.. .+++++|.+++++.-...+...+..|...+.. .+
T Consensus 342 g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~ 417 (490)
T 2xm6_A 342 GSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVER 417 (490)
T ss_dssp CCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC
T ss_pred CCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCC
Confidence 6 789999999998865 357788889999988 89999999999988323456778888888877 89
Q ss_pred CHHHHHHHHHHHHccCCC---CcchHHHHHHHHHh
Q 004856 621 ETELAELTAEKLISMEPE---NAGNYVLLSNIYAA 652 (727)
Q Consensus 621 ~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 652 (727)
+.++|...++++.+.+|+ ++.+...++.++..
T Consensus 418 d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 418 DYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 999999999999998853 66666667666554
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.77 E-value=3.9e-15 Score=161.84 Aligned_cols=412 Identities=9% Similarity=0.033 Sum_probs=247.6
Q ss_pred ChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCC--CCeehHHHHHHHH
Q 004856 232 DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD--KDRVVWNIMISAY 309 (727)
Q Consensus 232 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~ 309 (727)
|...|..++.. .+.|+++.|+.+++.+++.. +.+...|..++..+.+.|++++|..+|++... |++..|...+...
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 34455555553 45566666666666666542 33455566666666666666666666666543 3444444444322
Q ss_pred -HhcCCchHHHH----HHHHHHHc-CCCCC-hhhHHHHHHHhhc---------CCChHHHHHHHHHHHHhCCCCChhHHH
Q 004856 310 -YQSGFPKESLE----LLMCMVRS-GFRAD-LFTAIAAVSSIST---------MKNIEWGKQMHANVLRNGSDYQVSVHN 373 (727)
Q Consensus 310 -~~~g~~~~A~~----~~~~m~~~-g~~p~-~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~~~ 373 (727)
...|+.++|.+ +|++.... |..|+ ...|...+..... .|+++.|..+|+..++........+|.
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~ 169 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR 169 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 23455555443 44443322 33332 2223333332221 344444555554444410000011121
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH------HCC---CCCCH--------H
Q 004856 374 SLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMK------LEG---VEVDF--------V 436 (727)
Q Consensus 374 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~g---~~p~~--------~ 436 (727)
.........|. ..+..++. .+.+++++|..++.++. +.. +.|+. .
T Consensus 170 ~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 231 (530)
T 2ooe_A 170 DYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVD 231 (530)
T ss_dssp HHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHH
T ss_pred HHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHH
Confidence 11111000000 00000000 12345666766666532 111 23331 2
Q ss_pred HHHHHHHHHhc----CCCh----HHHHHHHHHHHHhCCCchHhHHHHHHHHHHh-------cCCHH-------HHHHHHH
Q 004856 437 TIINILPACVN----IGAL----EHVKYLHGYSMKLGLNSLSSVNTAIFISYAK-------CGCIE-------MAGELFD 494 (727)
Q Consensus 437 t~~~ll~a~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~ 494 (727)
.|...+..... .++. +.+..+++.+.... +.+...|..+...+.+ .|+++ +|..+|+
T Consensus 232 ~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~ 310 (530)
T 2ooe_A 232 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYE 310 (530)
T ss_dssp HHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHH
Confidence 33333332221 1222 35667777777753 4566777777777775 68887 8999999
Q ss_pred hccC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC
Q 004856 495 EEKI-DSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL--ITFLGLLTACVNAGLVEEGRIIFKEMKESYGY 570 (727)
Q Consensus 495 ~~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 570 (727)
+... ..| +...|..++..+.+.|++++|..+|+++++ +.|+. ..|..++..+.+.|++++|..+|++..+.
T Consensus 311 ~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--- 385 (530)
T 2ooe_A 311 RAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--- 385 (530)
T ss_dssp HHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---
Confidence 8654 345 578999999999999999999999999998 46653 47888888888999999999999999853
Q ss_pred CCC-hhHHHHHHHH-HHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcc----h
Q 004856 571 EPS-QEHYASMVNL-LGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAG----N 642 (727)
Q Consensus 571 ~p~-~~~~~~li~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~ 642 (727)
.|+ ...|...+.. +...|+.++|..+|++. ...| +...|..++..+...|+.++|..++++++...|.++. .
T Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~l 465 (530)
T 2ooe_A 386 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 465 (530)
T ss_dssp TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHH
T ss_pred cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHH
Confidence 343 3344333322 33689999999999977 3344 5678988888889999999999999999998776654 6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 643 YVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 643 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
+...+......|+.+.+..+.+++.+.
T Consensus 466 w~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 466 WARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777788888899999999999888765
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.9e-16 Score=159.46 Aligned_cols=267 Identities=12% Similarity=0.023 Sum_probs=228.0
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHH
Q 004856 398 KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIF 477 (727)
Q Consensus 398 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 477 (727)
.++..+..++..+...|++++|+++|+++.... +.+...+..++..+...|++++|..++..+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 356677788889999999999999999998763 2334455667778889999999999999999865 45677888899
Q ss_pred HHHHhcC-CHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHH
Q 004856 478 ISYAKCG-CIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVE 555 (727)
Q Consensus 478 ~~~~~~g-~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 555 (727)
..+...| ++++|...|++.....| +...|..+...+...|++++|++.++++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999999665445 57889999999999999999999999999853 335677888999999999999
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC----------CCCHhhHHHHHHHHHHcCCHHH
Q 004856 556 EGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PF----------KPDARVWGPLLSACKMHSETEL 624 (727)
Q Consensus 556 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~ll~~~~~~g~~~~ 624 (727)
+|...++.+.+. .+.+...+..+...+.+.|++++|...++++ .. ......|..+...+...|++++
T Consensus 177 ~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999853 3445778999999999999999999999877 11 2235688888888999999999
Q ss_pred HHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 625 AELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 625 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
|+..++++++..|++..++..++.+|...|++++|.+.+++..+.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999866543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-16 Score=165.36 Aligned_cols=281 Identities=10% Similarity=-0.023 Sum_probs=219.5
Q ss_pred HHhcCCHHHHHH-HHhcCCCC-------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC
Q 004856 379 YCECEDLNCARK-IFDSVKTK-------TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA 450 (727)
Q Consensus 379 ~~~~g~~~~A~~-~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 450 (727)
+...|++++|.+ .|++.... +...|..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344577888887 77754421 34567788888889999999999999988763 3356677788888889999
Q ss_pred hHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCC-HHHHHH---------------HHHHHH
Q 004856 451 LEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD-IITWNS---------------MISAYA 514 (727)
Q Consensus 451 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~---------------li~~~~ 514 (727)
+++|...+..+.+.. +.+..++..+...|...|++++|...|+++....|+ ...+.. .+..+.
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 999999998888876 456778888888999999999999999885443343 222221 233344
Q ss_pred HcCChHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHH
Q 004856 515 KHGDWSQCFKLYTQMKQSDVRPD---LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMD 591 (727)
Q Consensus 515 ~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 591 (727)
..|++++|+..|+++.+. .|+ ..++..+...+...|++++|...++++.+. .+.+...+..+...|.+.|+++
T Consensus 193 ~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSE 268 (368)
T ss_dssp HHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred hcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHH
Confidence 889999999999999985 454 788999999999999999999999999865 2345778999999999999999
Q ss_pred HHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-----------cchHHHHHHHHHhcCChhH
Q 004856 592 EARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPEN-----------AGNYVLLSNIYAAAGKWNG 658 (727)
Q Consensus 592 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~ 658 (727)
+|.+.++++ ...| +...|..+...+...|++++|...+++++++.|++ ..++..++.+|...|++++
T Consensus 269 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 269 EAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 999999987 4445 56688888888999999999999999999988877 7889999999999999999
Q ss_pred HHHHHHH
Q 004856 659 VAKMRTF 665 (727)
Q Consensus 659 a~~~~~~ 665 (727)
|..++++
T Consensus 349 A~~~~~~ 355 (368)
T 1fch_A 349 YGAADAR 355 (368)
T ss_dssp HHHHHTT
T ss_pred HHHhHHH
Confidence 9998764
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.74 E-value=6.3e-15 Score=160.24 Aligned_cols=410 Identities=9% Similarity=0.029 Sum_probs=289.9
Q ss_pred CCCcccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHH
Q 004856 195 KDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTAL 274 (727)
Q Consensus 195 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 274 (727)
..|...|..++. +.+.|++++|..+|+++.+. .+-+...|...+..+.+.|+.+.|..+|+.+++.. |++..|...
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 346778999998 58899999999999999875 23455678899999999999999999999999875 577777777
Q ss_pred HHH-hhcCCChHHHHH----HHhcCC------CCCeehHHHHHHHHHh---------cCCchHHHHHHHHHHHcCCCCCh
Q 004856 275 LSM-YSKLASLEDAKM----LFDKMS------DKDRVVWNIMISAYYQ---------SGFPKESLELLMCMVRSGFRADL 334 (727)
Q Consensus 275 i~~-~~~~g~~~~A~~----~~~~~~------~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~ 334 (727)
+.. ....|+.+.|.+ +|+... ..+...|...+....+ .|++++|..+|++.... |+.
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~ 162 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMI 162 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCT
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhh
Confidence 653 345677777665 666542 1356678888876655 68899999999999872 432
Q ss_pred ---hhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhc-------CC------CC
Q 004856 335 ---FTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDS-------VK------TK 398 (727)
Q Consensus 335 ---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-------~~------~~ 398 (727)
..|..........+. . +...++. .+.+++..|..++.. +. .+
T Consensus 163 ~~~~~~~~~~~~e~~~~~-~-------------------~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 163 NIEQLWRDYNKYEEGINI-H-------------------LAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp THHHHHHHHHHHHHHHCH-H-------------------HHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred hHHHHHHHHHHHHHhhch-h-------------------HHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 222222111100010 0 1111111 122344445444432 11 11
Q ss_pred C--------hhHHHHHHHHHHhc----CCh----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-------CCChH---
Q 004856 399 T--------VVSWSSMIKGYVTH----DQS----LEALRLFSEMKLEGVEVDFVTIINILPACVN-------IGALE--- 452 (727)
Q Consensus 399 ~--------~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-------~~~~~--- 452 (727)
+ ...|...+...... ++. ++++.+|++..... +-+...|......+.+ .|+++
T Consensus 221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~ 299 (530)
T 2ooe_A 221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 299 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence 1 24566555433322 232 47788898888752 2345566666666654 78877
Q ss_pred ----HHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCC-H-HHHHHHHHHHHHcCChHHHHHHH
Q 004856 453 ----HVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD-I-ITWNSMISAYAKHGDWSQCFKLY 526 (727)
Q Consensus 453 ----~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~li~~~~~~g~~~~A~~~~ 526 (727)
+|..+++...+.-.+.+...+..++..+.+.|++++|..+|++.....|+ . ..|..++..+.+.|+.++|.++|
T Consensus 300 ~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 379 (530)
T 2ooe_A 300 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 379 (530)
T ss_dssp HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHH
Confidence 88999998886334556888999999999999999999999996655564 3 58999999999999999999999
Q ss_pred HHHHHCCCCCC-hHHHHHHHHH-HHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC----
Q 004856 527 TQMKQSDVRPD-LITFLGLLTA-CVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM---- 600 (727)
Q Consensus 527 ~~m~~~g~~p~-~~t~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---- 600 (727)
++..+. .|+ ...|...... +...|+.++|..+|+...+.. +.+...|..+++.+.+.|+.++|..+|++.
T Consensus 380 ~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 380 KKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 999974 443 3444333322 346899999999999998762 335788999999999999999999999988
Q ss_pred CCCCC--HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004856 601 PFKPD--ARVWGPLLSACKMHSETELAELTAEKLISMEPE 638 (727)
Q Consensus 601 ~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 638 (727)
+..|+ ...|...+.....+|+.+.+..+.+++.+..|+
T Consensus 456 ~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 456 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp CSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 22332 348888888889999999999999999998884
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.1e-14 Score=153.14 Aligned_cols=354 Identities=12% Similarity=-0.002 Sum_probs=295.5
Q ss_pred CCCeehHHHHHHHHHh----cCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhc----CCChHHHHHHHHHHHHhCCCC
Q 004856 296 DKDRVVWNIMISAYYQ----SGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST----MKNIEWGKQMHANVLRNGSDY 367 (727)
Q Consensus 296 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~ 367 (727)
..+..++..+...|.. .+++++|+..|++..+.| +...+..+-..+.. .++.++|...+....+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 3467778888888888 899999999999998864 45566667777776 899999999999999876
Q ss_pred ChhHHHHHHHHHHh----cCCHHHHHHHHhcCCCC-ChhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHH
Q 004856 368 QVSVHNSLIDMYCE----CEDLNCARKIFDSVKTK-TVVSWSSMIKGYVT----HDQSLEALRLFSEMKLEGVEVDFVTI 438 (727)
Q Consensus 368 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 438 (727)
+...+..|..+|.. .+++++|.+.|++..+. ++.++..|...|.. .+++++|++.|++..+.| +...+
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~ 186 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC 186 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 55667788888988 88999999999987654 66788888888887 889999999999999875 56677
Q ss_pred HHHHHHHhc----CCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHh----cCCHHHHHHHHHhccCCCCCHHHHHHHH
Q 004856 439 INILPACVN----IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAK----CGCIEMAGELFDEEKIDSKDIITWNSMI 510 (727)
Q Consensus 439 ~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~li 510 (727)
..+...+.. .++.++|..++....+.+ +...+..+..+|.. .+++++|...|++... ..+...+..+.
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~~~~a~~~lg 262 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE-QGNSIAQFRLG 262 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT-TTCHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence 777777776 899999999999998876 45567777778876 8999999999998654 45677777888
Q ss_pred HHHHH----cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc-----CCHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 004856 511 SAYAK----HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNA-----GLVEEGRIIFKEMKESYGYEPSQEHYASMV 581 (727)
Q Consensus 511 ~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 581 (727)
..|.. .++.++|++.|++..+.| +...+..+...|... +++++|...+++..+. + +...+..|.
T Consensus 263 ~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg 335 (490)
T 2xm6_A 263 YILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLG 335 (490)
T ss_dssp HHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHH
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHH
Confidence 88887 899999999999998764 556777888888887 8999999999999875 3 456778888
Q ss_pred HHHHhcC---CHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHh--
Q 004856 582 NLLGRAG---HMDEARELVKDMPFKPDARVWGPLLSACKM----HSETELAELTAEKLISMEPENAGNYVLLSNIYAA-- 652 (727)
Q Consensus 582 ~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 652 (727)
..|.+.| +.++|.+++++.-...+...+..+...+.. .++.++|...++++.+.. ++.++..|+.+|..
T Consensus 336 ~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~ 413 (490)
T 2xm6_A 336 AIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGL 413 (490)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTS
T ss_pred HHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCC
Confidence 8888767 789999999988323567788888888888 899999999999998864 57899999999999
Q ss_pred --cCChhHHHHHHHHHHhCCC
Q 004856 653 --AGKWNGVAKMRTFLRDRGL 671 (727)
Q Consensus 653 --~g~~~~a~~~~~~m~~~~~ 671 (727)
.++.++|...+++..+.+.
T Consensus 414 g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 414 GVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHCCC
Confidence 8999999999999988763
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-16 Score=164.43 Aligned_cols=261 Identities=10% Similarity=-0.053 Sum_probs=206.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHH
Q 004856 399 TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFI 478 (727)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 478 (727)
+...|..+...+.+.|++++|+..|+++.... +.+...+..+...+...|++++|...+..+.+.. +.+...+..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44568888888888888888888888888753 3356677888888888888888888888888765 445777888888
Q ss_pred HHHhcCCHHHHHHHHHhccCCCCC-----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---ChHHHHHH
Q 004856 479 SYAKCGCIEMAGELFDEEKIDSKD-----------IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP---DLITFLGL 544 (727)
Q Consensus 479 ~~~~~g~~~~A~~~~~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~l 544 (727)
.|.+.|++++|...|++.....|+ ...+..+...+...|++++|++.|+++.+.. | +..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN--GDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS--CSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC--cCccCHHHHHHH
Confidence 899999999999988875432332 2233445788899999999999999999853 4 57889999
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCH
Q 004856 545 LTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSET 622 (727)
Q Consensus 545 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 622 (727)
...+...|++++|...++++.+. .+.+..+|..+..+|.+.|++++|.+.++++ ...| +..+|..+...+...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 99999999999999999999875 3445779999999999999999999999988 4455 467888888899999999
Q ss_pred HHHHHHHHHHHccCCC------------CcchHHHHHHHHHhcCChhHHHHHHHH
Q 004856 623 ELAELTAEKLISMEPE------------NAGNYVLLSNIYAAAGKWNGVAKMRTF 665 (727)
Q Consensus 623 ~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 665 (727)
++|...+++++++.|+ +...+..++.++...|+.+.+....++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999998775 367788999999999999998887654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.72 E-value=4e-15 Score=147.39 Aligned_cols=268 Identities=8% Similarity=-0.002 Sum_probs=207.5
Q ss_pred HHhcCCHHHHHHHHhcCCCCCh----hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHH
Q 004856 379 YCECEDLNCARKIFDSVKTKTV----VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHV 454 (727)
Q Consensus 379 ~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 454 (727)
....|+++.|...++.....++ ...-.+..+|...|++++|+..++.. -.|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHH
Confidence 4557888888888887765543 23455678888899998888766542 345667777888888888888999
Q ss_pred HHHHHHHHHhCC-CchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 004856 455 KYLHGYSMKLGL-NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSD 533 (727)
Q Consensus 455 ~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 533 (727)
.+.++.+...+. +.+...+..+...|...|++++|.+.+++ ..+...+..++..|.+.|++++|.+.|+++.+.
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 159 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ- 159 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 888888887764 34566677777889999999999999987 457788999999999999999999999999985
Q ss_pred CCCChHHH---HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhh
Q 004856 534 VRPDLITF---LGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARV 608 (727)
Q Consensus 534 ~~p~~~t~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 608 (727)
.|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|++.++++ ...| +..+
T Consensus 160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 4764321 12233344558999999999999976 4557888999999999999999999999987 4455 5668
Q ss_pred HHHHHHHHHHcCCHHH-HHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHH
Q 004856 609 WGPLLSACKMHSETEL-AELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKM 662 (727)
Q Consensus 609 ~~~ll~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 662 (727)
|..++..+...|+.++ +..+++++++++|+++.+. +...+.+.++++..-
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHH
Confidence 8888888888998865 6789999999999887654 345566666665543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.70 E-value=9.6e-16 Score=158.38 Aligned_cols=241 Identities=10% Similarity=0.030 Sum_probs=124.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004856 369 VSVHNSLIDMYCECEDLNCARKIFDSVK---TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPAC 445 (727)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 445 (727)
..++..+...|.+.|++++|.+.|+++. ..+..+|..+...|...|++++|+..|+++.... |+.......+
T Consensus 98 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~--- 172 (368)
T 1fch_A 98 MEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPA--- 172 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC-----
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHH---
Confidence 3345555555555566666655555443 2245566666677777777777777777766643 2211110000
Q ss_pred hcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC---CHHHHHHHHHHHHHcCChHHH
Q 004856 446 VNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK---DIITWNSMISAYAKHGDWSQC 522 (727)
Q Consensus 446 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A 522 (727)
+..... ..+ ...+..+...+ ..|++++|...|+++....| +...|..+...|...|++++|
T Consensus 173 ---~~~~~~-----------~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A 236 (368)
T 1fch_A 173 ---EEGAGG-----------AGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKA 236 (368)
T ss_dssp ----------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ---HHHhhh-----------hcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 000000 000 00001111122 55555555555555332223 355566666666666666666
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 004856 523 FKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-P 601 (727)
Q Consensus 523 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 601 (727)
+..|+++.+.. +.+..++..+..++...|++++|...++++.+. .+.+...+..+...|.+.|++++|.+.++++ .
T Consensus 237 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 237 VDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66666666531 223555666666666666666666666666543 1223455666666666666666666666655 1
Q ss_pred CCC------------CHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004856 602 FKP------------DARVWGPLLSACKMHSETELAELTAEKLI 633 (727)
Q Consensus 602 ~~p------------~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 633 (727)
..| ...+|..+..++...|+.++|..++++.+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 314 MQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred hCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 111 13566666666666676666666665443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.3e-15 Score=147.14 Aligned_cols=248 Identities=11% Similarity=0.024 Sum_probs=202.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcC
Q 004856 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDF--VTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCG 484 (727)
Q Consensus 407 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 484 (727)
|.-....|++.+|+..+++.... .|+. .....+..++...|+++.|...++. .-+|+...+..+...|...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 34456789999999999876543 4543 3446677899999999999875543 24667888899999999999
Q ss_pred CHHHHHHHHHhccCC--CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 004856 485 CIEMAGELFDEEKID--SK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIF 561 (727)
Q Consensus 485 ~~~~A~~~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 561 (727)
+.++|.+.++++... .| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999986422 35 566777788999999999999999987 457888999999999999999999999
Q ss_pred HHhHHhcCCCCChhH---HHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 004856 562 KEMKESYGYEPSQEH---YASMVNLLGRAGHMDEARELVKDM-P-FKPDARVWGPLLSACKMHSETELAELTAEKLISME 636 (727)
Q Consensus 562 ~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 636 (727)
+.+.+. .|+... ...++..+...|++++|..+|+++ . ...+...|+.+..++.+.|++++|+..++++++++
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999976 355321 223445555679999999999998 2 33467789999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCChhH-HHHHHHHHHhC
Q 004856 637 PENAGNYVLLSNIYAAAGKWNG-VAKMRTFLRDR 669 (727)
Q Consensus 637 p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~ 669 (727)
|+++.++..++.++...|++++ +.++++++.+.
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999986 57888887765
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-14 Score=155.93 Aligned_cols=332 Identities=10% Similarity=-0.041 Sum_probs=189.7
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHHHHHHhC------CCC-ChhHHHHHHHHHHhc--CCHHHHHHHHhcCCC--C-ChhH
Q 004856 335 FTAIAAVSSISTMKNIEWGKQMHANVLRNG------SDY-QVSVHNSLIDMYCEC--EDLNCARKIFDSVKT--K-TVVS 402 (727)
Q Consensus 335 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g------~~~-~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~--~-~~~~ 402 (727)
.+|..+..++...|++++|...++.+.+.. ..+ ...++..+..++.+. +++++|.+.|++..+ | ++..
T Consensus 95 ~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~ 174 (472)
T 4g1t_A 95 VTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEF 174 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHH
Confidence 344445555555555555555554443320 011 123344443344433 356777777766542 2 3444
Q ss_pred HHHHHHH---HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh----cCCChHHHHHHHHHHHHhCCCchHhHHHH
Q 004856 403 WSSMIKG---YVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACV----NIGALEHVKYLHGYSMKLGLNSLSSVNTA 475 (727)
Q Consensus 403 ~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 475 (727)
+..+... +...++.++|++.|++..+.. +.+...+..+...+. ..++.++|.++++...+.. +.+..++..
T Consensus 175 ~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~ 252 (472)
T 4g1t_A 175 TSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRS 252 (472)
T ss_dssp HHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHH
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHH
Confidence 4444433 334566777777777776642 122334433333333 3356667777777776655 445566777
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHH-------------------cCChHHHHHHHHHHHHCCCC
Q 004856 476 IFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAK-------------------HGDWSQCFKLYTQMKQSDVR 535 (727)
Q Consensus 476 li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~-------------------~g~~~~A~~~~~~m~~~g~~ 535 (727)
+...|.+.|++++|...|++.....| +...|..+...|.. .+..++|...+++..+.. +
T Consensus 253 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~ 331 (472)
T 4g1t_A 253 AAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-D 331 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-C
Confidence 77788888888888888877543344 45556655555432 234677888888887743 2
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCh--hHHHHHHHH-HHhcCCHHHHHHHHHhC-CCCCCHhhHHH
Q 004856 536 PDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQ--EHYASMVNL-LGRAGHMDEARELVKDM-PFKPDARVWGP 611 (727)
Q Consensus 536 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~-~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 611 (727)
.+..++..+...+...|++++|+..|++..+. ...|.. ..+..+... +...|+.++|+..+++. .+.|+...+..
T Consensus 332 ~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~ 410 (472)
T 4g1t_A 332 NLFRVCSILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK 410 (472)
T ss_dssp TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred chhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH
Confidence 34667888999999999999999999998864 222221 123333332 34778999999999887 56676543332
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeE
Q 004856 612 LLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSW 679 (727)
Q Consensus 612 ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 679 (727)
. .+.+..++++.++.+|+++.+|..|+.+|...|++++|++.+++..+.+-......+|
T Consensus 411 ~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 411 M---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp H---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred H---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 2 3455677888889999999999999999999999999999999988876544334444
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-15 Score=153.35 Aligned_cols=259 Identities=10% Similarity=-0.033 Sum_probs=182.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHh
Q 004856 403 WSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAK 482 (727)
Q Consensus 403 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 482 (727)
|..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|++++|...+..+.+.. +.+...+..+...|..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 4444455555555555555555555432 1233444445555555555555555555555543 3344555556666666
Q ss_pred cCCHHHHHHHHHhccCCCCC-HHHHHHH--------------HH-HHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 004856 483 CGCIEMAGELFDEEKIDSKD-IITWNSM--------------IS-AYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLT 546 (727)
Q Consensus 483 ~g~~~~A~~~~~~~~~~~~~-~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 546 (727)
.|++++|...+++.....|+ ...+..+ .. .+...|++++|.+.++++.+.. +.+...+..+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 66666666666654322232 1222222 22 3677889999999999998853 336788999999
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHH
Q 004856 547 ACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETEL 624 (727)
Q Consensus 547 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 624 (727)
.+...|++++|...++++.+. .+.+...+..+...+.+.|++++|.+.++++ ...| +...|..+...+...|++++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence 999999999999999999865 2345778999999999999999999999987 3344 56788888888999999999
Q ss_pred HHHHHHHHHccCCC------------CcchHHHHHHHHHhcCChhHHHHHHHHH
Q 004856 625 AELTAEKLISMEPE------------NAGNYVLLSNIYAAAGKWNGVAKMRTFL 666 (727)
Q Consensus 625 A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 666 (727)
|...++++++..|+ +..++..++.++...|++++|..++++.
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999998 6788999999999999999999988643
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.5e-17 Score=178.94 Aligned_cols=151 Identities=9% Similarity=0.009 Sum_probs=131.6
Q ss_pred cCCCchhhHHHHHHHHHccCChhHHHHHHhcCC-------CCCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcc
Q 004856 60 GLHQNLILSSNLIDSYANLGLLSLSQQVFNSIT-------SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAED 132 (727)
Q Consensus 60 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~-------~~~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 132 (727)
....-.++||+||++||++|++++|.++|++|. .||++|||+||.+|++.|++++|.++|++|...|+.||.+
T Consensus 122 ~~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvv 201 (1134)
T 3spa_A 122 QLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL 201 (1134)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHH
Confidence 344456789999999999999999999997753 6999999999999999999999999999999999999999
Q ss_pred cHHHHHHHhhccCCh-hHHHHHHHHHHHHcCCCchhHHHHHHHhhhccCCCChhhhhhh-ccCCC-----CCcccHHHHH
Q 004856 133 TYPFVIRSCSCLLDF-ISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI-QRKFK-----DLKSRWNSLI 205 (727)
Q Consensus 133 t~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~~~g~~~~a~~~-~~~~~-----~~~~~~~~li 205 (727)
||+++|.++++.|.. +.|.+++++|.+.|+.||..+|+++++.+.+. +-++..+++ ..... +.+.+.+.|.
T Consensus 202 TYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~--~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA--TVLKAVHKVKPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH--HHHHHHGGGCCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH--HHHHHHHHhCcccCCCCCCcccccchHHHH
Confidence 999999999999985 78999999999999999999999999999888 888888887 44322 2244556677
Q ss_pred HHHHhCC
Q 004856 206 SLAVQNG 212 (727)
Q Consensus 206 ~~~~~~g 212 (727)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 7777766
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=9e-17 Score=174.70 Aligned_cols=166 Identities=13% Similarity=0.138 Sum_probs=131.2
Q ss_pred CCCchHhHHHHHHHHHHhcCCHHHHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChH
Q 004856 465 GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEK-----IDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI 539 (727)
Q Consensus 465 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 539 (727)
.......+|++||++|+++|++++|.++|++|. +..||+++||+||.+|++.|++++|.++|++|.+.|+.||.+
T Consensus 122 ~~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvv 201 (1134)
T 3spa_A 122 QLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL 201 (1134)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHH
Confidence 345567789999999999999999999998754 237999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCC-HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC------HhhHHHH
Q 004856 540 TFLGLLTACVNAGL-VEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPD------ARVWGPL 612 (727)
Q Consensus 540 t~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~------~~~~~~l 612 (727)
||+++|.++++.|+ .++|.++|++|.++ |+.||..+|++++....+.+-++...++...+ +|+ ..+...|
T Consensus 202 TYntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f--~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF--SLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC--CCCCCCCCCCCCCTTT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc--CCCCCCcccccchHHH
Confidence 99999999999997 57899999999998 99999999999998777755444444443333 332 3344444
Q ss_pred HHHHHHcC---------CHHHHHHHHHHHH
Q 004856 613 LSACKMHS---------ETELAELTAEKLI 633 (727)
Q Consensus 613 l~~~~~~g---------~~~~A~~~~~~~~ 633 (727)
...|.+.+ ..++-...+++-+
T Consensus 279 ~dl~s~d~~~s~pk~~~~~~~L~~~~~~Ql 308 (1134)
T 3spa_A 279 RDVYAKDGRVSYPKLHLPLKTLQCLFEKQL 308 (1134)
T ss_dssp HHHHCCCSCCCCCCCSSCHHHHHHHHHHHH
T ss_pred HHHHccCCCCcCccccCCHHHHHHHHHHHH
Confidence 45565544 2455555555554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.9e-15 Score=153.64 Aligned_cols=233 Identities=10% Similarity=0.050 Sum_probs=195.2
Q ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHH
Q 004856 434 DFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISA 512 (727)
Q Consensus 434 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~ 512 (727)
+...+..+...+.+.|++++|..+++.+.+.. +.+...+..+...|.+.|++++|...|++.....| +...|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34457788888999999999999999999876 55688899999999999999999999998654344 68899999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCh-----------HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 004856 513 YAKHGDWSQCFKLYTQMKQSDVRPDL-----------ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMV 581 (727)
Q Consensus 513 ~~~~g~~~~A~~~~~~m~~~g~~p~~-----------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 581 (727)
|...|++++|+..|+++.+. .|+. ..+..+...+...|++++|..+++++.+...-.++..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999884 4532 2233457889999999999999999997622222578999999
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHH
Q 004856 582 NLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGV 659 (727)
Q Consensus 582 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 659 (727)
..|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|+..+++++++.|+++.++..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999988 3344 5678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 004856 660 AKMRTFLRDR 669 (727)
Q Consensus 660 ~~~~~~m~~~ 669 (727)
...++++.+.
T Consensus 301 ~~~~~~al~~ 310 (365)
T 4eqf_A 301 VSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998765
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-13 Score=140.31 Aligned_cols=277 Identities=9% Similarity=-0.066 Sum_probs=127.2
Q ss_pred CeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 004856 298 DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLID 377 (727)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 377 (727)
+...|..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++.+.+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------- 85 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD------------- 85 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------------
Confidence 34456666667777777777777777766542 1123333333344444444444444444433331
Q ss_pred HHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhcCCChHHHHH
Q 004856 378 MYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVT-IINILPACVNIGALEHVKY 456 (727)
Q Consensus 378 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~ 456 (727)
..+..+|..+...|...|++++|+..|+++.... |+... +..+...+
T Consensus 86 -------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~----------- 133 (327)
T 3cv0_A 86 -------------------PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQAD----------- 133 (327)
T ss_dssp -------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC-------------------
T ss_pred -------------------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHH-----------
Confidence 1234455556666666666666666666665532 22111 11110000
Q ss_pred HHHHHHHhCCCchHhHHHHH-HH-HHHhcCCHHHHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 004856 457 LHGYSMKLGLNSLSSVNTAI-FI-SYAKCGCIEMAGELFDEEKIDS-KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSD 533 (727)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 533 (727)
++......+ .. .+...|++++|...+++..... .+...|..+...|...|++++|++.++++.+..
T Consensus 134 -----------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 202 (327)
T 3cv0_A 134 -----------VDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR 202 (327)
T ss_dssp -----------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -----------HHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 000000001 01 1333444444444444422112 234455555555555555555555555555431
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-------
Q 004856 534 VRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPD------- 605 (727)
Q Consensus 534 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~------- 605 (727)
+.+..++..+...+...|++++|...++++.+. .+.+...+..+...|.+.|++++|.+.++++ ...|+
T Consensus 203 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 279 (327)
T 3cv0_A 203 -PDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGE 279 (327)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC----
T ss_pred -CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcccccccc
Confidence 123444555555555555555555555555443 1223445555555555555555555555544 11122
Q ss_pred ------HhhHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 004856 606 ------ARVWGPLLSACKMHSETELAELTAEKLIS 634 (727)
Q Consensus 606 ------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 634 (727)
...|..+...+...|+.++|...++++++
T Consensus 280 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 280 ASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp -CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred chhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33455555555555666666555554443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.8e-14 Score=133.24 Aligned_cols=195 Identities=14% Similarity=0.113 Sum_probs=158.2
Q ss_pred CchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHH
Q 004856 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGL 544 (727)
Q Consensus 467 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l 544 (727)
+++...+..+...+.+.|++++|...|++.....| +...|..+...+.+.|++++|+..|++..+. .| +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 45566777788889999999999999998655455 6788999999999999999999999999984 56 57788999
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhhHHH
Q 004856 545 LTACVNA-----------GLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGHMDEARELVKDM-PFKPDARVWGP 611 (727)
Q Consensus 545 l~~~~~~-----------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 611 (727)
..++... |++++|+..+++..+. .|+ ...+..+..+|...|++++|++.++++ ....+...|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 9999999 9999999999999865 454 678899999999999999999999987 22267788889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 004856 612 LLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFL 666 (727)
Q Consensus 612 ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 666 (727)
+...+...|++++|+..++++++++|+++.++..++.++...|++++|.+.+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998754
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-13 Score=134.60 Aligned_cols=225 Identities=14% Similarity=0.042 Sum_probs=156.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHH
Q 004856 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISY 480 (727)
Q Consensus 401 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 480 (727)
..|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...+..+.+....
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~------------- 70 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGRE------------- 70 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc-------------
Confidence 455666666677777777777777666654 44555555555555555555555555444432100
Q ss_pred HhcCCHHHHHHHHHhccCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHH
Q 004856 481 AKCGCIEMAGELFDEEKIDSKD----IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEE 556 (727)
Q Consensus 481 ~~~g~~~~A~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 556 (727)
..++ ...|..+...|...|++++|++.|++..+ +.|+. ..+...|++++
T Consensus 71 ------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~-------~~~~~~~~~~~ 123 (258)
T 3uq3_A 71 ------------------MRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTA-------DILTKLRNAEK 123 (258)
T ss_dssp ------------------TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCH-------HHHHHHHHHHH
T ss_pred ------------------cccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchh-------HHHHHHhHHHH
Confidence 0111 45677777778888888888888888777 34553 33556677888
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 004856 557 GRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLIS 634 (727)
Q Consensus 557 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 634 (727)
|...++.+... .+.+...+..+...+...|++++|.+.++++ ...| +...|..+...+...|++++|+..++++++
T Consensus 124 a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 124 ELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 88888887753 2223557777888888888888888888877 3333 456777777778888889999999998888
Q ss_pred cCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 635 MEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 635 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
..|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 202 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 88888888888888999999999998888887654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-13 Score=147.45 Aligned_cols=383 Identities=9% Similarity=-0.050 Sum_probs=227.6
Q ss_pred ChhhHHHHHHHhcccCChhHHHHHHHHHHHh-----c---CCCChhHHhHHHHHhhcCCChHHHHHHHhcCCC-------
Q 004856 232 DSGTLINLLRSTVELKSLELGRIVHCVAVVS-----D---FCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD------- 296 (727)
Q Consensus 232 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------- 296 (727)
....|+.+...+...|+.++|.+.+...++. + .+....+|+.+..+|...|++++|...+++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3457888888889999999999999988763 1 122356788889999999999999888876532
Q ss_pred C----CeehHHHHHHHHHhc--CCchHHHHHHHHHHHcCCCCChh-hHHHHHH---HhhcCCChHHHHHHHHHHHHhCCC
Q 004856 297 K----DRVVWNIMISAYYQS--GFPKESLELLMCMVRSGFRADLF-TAIAAVS---SISTMKNIEWGKQMHANVLRNGSD 366 (727)
Q Consensus 297 ~----~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~---~~~~~~~~~~a~~~~~~~~~~g~~ 366 (727)
+ ...+++.+..++... +++++|++.|++..+. .|+.. .+..+.. .+...++.++|.+.+...++.. +
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 1 234565555555554 4688999999998775 45433 3333322 2445677788888888888764 3
Q ss_pred CChhHHHHHHHHHHh----cCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHH
Q 004856 367 YQVSVHNSLIDMYCE----CEDLNCARKIFDSVK---TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVD-FVTI 438 (727)
Q Consensus 367 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~ 438 (727)
.+..++..+...+.. .|++++|.+.+++.. ..+...+..+...|...|++++|+..|++..+. .|+ ..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHH
Confidence 344555555544444 456778888887654 335667888888899999999999999888775 344 3344
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcC
Q 004856 439 INILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHG 517 (727)
Q Consensus 439 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g 517 (727)
..+...+...+.... .. ............+..+.|...|++.....| +...|..+...|...|
T Consensus 285 ~~lg~~y~~~~~~~~---------~~-------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVM---------NL-------RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhh---------hH-------HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhc
Confidence 444433321110000 00 000011111222345677777776443233 5567888999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCh--HHHHHHHH-HHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 004856 518 DWSQCFKLYTQMKQSDVRPDL--ITFLGLLT-ACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAR 594 (727)
Q Consensus 518 ~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 594 (727)
++++|++.|++..+....|.. ..+..+.. .....|+.++|+..|++..+ +.|+........ ..+.
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l~ 416 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKLQ 416 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHHH
Confidence 999999999999985433221 12333332 23567999999999999885 456643332222 2333
Q ss_pred HHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHH
Q 004856 595 ELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLS 647 (727)
Q Consensus 595 ~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 647 (727)
+++++. ...| +..+|..+...+...|++++|+..|+++++++|.+|.+..-++
T Consensus 417 ~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 417 KIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 444433 2234 5678888988999999999999999999999998887766544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-13 Score=133.99 Aligned_cols=233 Identities=12% Similarity=0.032 Sum_probs=157.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCC----HHHHHH
Q 004856 369 VSVHNSLIDMYCECEDLNCARKIFDSVKT--KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV--EVD----FVTIIN 440 (727)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~t~~~ 440 (727)
...+..+...+...|++++|...|++..+ .+...|..+...|...|++++|+..|++..+... .|+ ...+..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 45678889999999999999999987532 6778899999999999999999999999876421 112 233444
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChH
Q 004856 441 ILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWS 520 (727)
Q Consensus 441 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 520 (727)
+... |.+.|++++|...|++.....|+. ..+...|+++
T Consensus 85 l~~~-----------------------------------~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~ 122 (258)
T 3uq3_A 85 IGNA-----------------------------------YHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAE 122 (258)
T ss_dssp HHHH-----------------------------------HHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHH
T ss_pred HHHH-----------------------------------HHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHH
Confidence 4444 445555555555555433223332 2344556677
Q ss_pred HHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 004856 521 QCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKD 599 (727)
Q Consensus 521 ~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 599 (727)
+|+..++++... .| +...+..+...+...|++++|...++++.+. .+.+...+..+...|.+.|++++|.+.+++
T Consensus 123 ~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 123 KELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNK 198 (258)
T ss_dssp HHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 777777777663 34 3456666777777777777777777777654 233456677777777777777777777776
Q ss_pred C-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccC------CCCcchHHHHH
Q 004856 600 M-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISME------PENAGNYVLLS 647 (727)
Q Consensus 600 ~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~ 647 (727)
+ ...| +...|..+...+...|++++|...+++++++. |.+...+..+.
T Consensus 199 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 199 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 6 3334 35567777777888888888888888888877 65555555444
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.2e-13 Score=132.90 Aligned_cols=242 Identities=10% Similarity=-0.110 Sum_probs=180.9
Q ss_pred cCChHHHHHHHHHHHHCCCC--C-CHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHH
Q 004856 413 HDQSLEALRLFSEMKLEGVE--V-DFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMA 489 (727)
Q Consensus 413 ~g~~~~A~~~~~~m~~~g~~--p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 489 (727)
.|++++|+..|+++.+.... | +...+..+...+...|++++|...+..+.+.. +.+...+..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 46677777777777664321 1 24456666667777777777777777777664 34566777888888888888888
Q ss_pred HHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc
Q 004856 490 GELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESY 568 (727)
Q Consensus 490 ~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 568 (727)
...|++.....| +...|..+...|...|++++|+..|+++.+ +.|+.......+..+...|++++|...++.....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 888888543334 678899999999999999999999999998 4576555555666667889999999999888765
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcch
Q 004856 569 GYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPD-----ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGN 642 (727)
Q Consensus 569 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 642 (727)
.+++...+ .++..+...++.++|.+.+++. ...|+ ...|..+...+...|++++|...++++++.+|++...
T Consensus 174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 33444444 4777788888999999999887 33332 4678888888999999999999999999999977554
Q ss_pred HHHHHHHHHhcCChhHHHHHH
Q 004856 643 YVLLSNIYAAAGKWNGVAKMR 663 (727)
Q Consensus 643 ~~~l~~~~~~~g~~~~a~~~~ 663 (727)
+ ..++...|++++|.+.+
T Consensus 252 ~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 H---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHhhHHHH
Confidence 4 56778889998887765
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-12 Score=137.80 Aligned_cols=374 Identities=10% Similarity=0.004 Sum_probs=196.3
Q ss_pred HHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCCh---HHHHHHHhcCCCCCeehHHHHHHHHHhcC----
Q 004856 241 RSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASL---EDAKMLFDKMSDKDRVVWNIMISAYYQSG---- 313 (727)
Q Consensus 241 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g---- 313 (727)
..+.+.|++++|.+++..+.+.| ++..+..|..+|...|+. ++|...|++..+.++..+..+...+...+
T Consensus 11 ~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 11 NEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCH
T ss_pred HHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC
Confidence 33445566667777777666655 333444555666666777 78888888877667777777777565555
Q ss_pred -CchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCCh---HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC----CH
Q 004856 314 -FPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNI---EWGKQMHANVLRNGSDYQVSVHNSLIDMYCECE----DL 385 (727)
Q Consensus 314 -~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~ 385 (727)
++++|+..|++..+.|... .+..+...+...+.. ..+.+.+....+.|. ......|...|...+ +.
T Consensus 88 ~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp HHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGH
T ss_pred cCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCH
Confidence 6678888888888765322 444444444443332 334444444444443 445666667777766 45
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 004856 386 NCARKIFDSVKTKTVVSWSSMIKGYVTHD---QSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSM 462 (727)
Q Consensus 386 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 462 (727)
+.+..+++.....++.++..|...|...| +.++|+..|++..+.| .++...+..+...|...
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g-------------- 226 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDA-------------- 226 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCG--------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCC--------------
Confidence 55666676666667777778888888888 7788888888877766 23333333333333332
Q ss_pred HhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHH-H--HHcCChHHHHHHHHHHHHCCCCCChH
Q 004856 463 KLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA-Y--AKHGDWSQCFKLYTQMKQSDVRPDLI 539 (727)
Q Consensus 463 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~~~ 539 (727)
....+++++|...|++.. .-+...+..+... | ...+++++|++.|++..+.| +..
T Consensus 227 -----------------~~~~~d~~~A~~~~~~aa--~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~ 284 (452)
T 3e4b_A 227 -----------------TLGTPDEKTAQALLEKIA--PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPR 284 (452)
T ss_dssp -----------------GGSSCCHHHHHHHHHHHG--GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHH
T ss_pred -----------------CCCCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 001134445555554433 2234444444444 2 34566777777777766654 455
Q ss_pred HHHHHHHHHHhcC-----CHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHhhHH
Q 004856 540 TFLGLLTACVNAG-----LVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR----AGHMDEARELVKDMPFKPDARVWG 610 (727)
Q Consensus 540 t~~~ll~~~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~ 610 (727)
.+..|...|. .| ++++|..+|++.. . -+...+..|..+|.. ..++++|..+|++.-...+.....
T Consensus 285 A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~----g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~ 358 (452)
T 3e4b_A 285 AELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G----REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADF 358 (452)
T ss_dssp HHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T----TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHH
T ss_pred HHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHH
Confidence 5555555555 34 6777777776554 2 244555566666654 336777777777662222333444
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHccCCCCcchHHHHHHHH--HhcCChhHHHHHHHHHHh
Q 004856 611 PLLSACKM----HSETELAELTAEKLISMEPENAGNYVLLSNIY--AAAGKWNGVAKMRTFLRD 668 (727)
Q Consensus 611 ~ll~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~~~~~m~~ 668 (727)
.|...|.. ..|.++|...++++.+..+.+ +...+..+. ...++.++|.++.++..+
T Consensus 359 ~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 359 AIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 44444432 447788888888887766532 333333332 222355566666665443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.2e-13 Score=130.65 Aligned_cols=244 Identities=9% Similarity=0.002 Sum_probs=139.0
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC
Q 004856 374 SLIDMYCECEDLNCARKIFDSVKT---KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA 450 (727)
Q Consensus 374 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 450 (727)
.....+...|++++|...|++..+ .+...|..+...|...|++++|+..|++....+..|+.
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--------------- 72 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKA--------------- 72 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTC---------------
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhH---------------
Confidence 344445555555555555554432 13334555555555555555555555555542211111
Q ss_pred hHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004856 451 LEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQM 529 (727)
Q Consensus 451 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 529 (727)
....+..+...|...|++++|...|++.....| +...|..+...|...|++++|++.|++.
T Consensus 73 ------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 134 (272)
T 3u4t_A 73 ------------------KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQ 134 (272)
T ss_dssp ------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGG
T ss_pred ------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 112244455555555666666666655332222 4456666777777777777777777776
Q ss_pred HHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC---HHHHHHHHHhC----C
Q 004856 530 KQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGH---MDEARELVKDM----P 601 (727)
Q Consensus 530 ~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~----~ 601 (727)
.+. .| +...+..+...+...+++++|...++++.+. .+.+...+..+...+...|+ +++|...++++ .
T Consensus 135 l~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 210 (272)
T 3u4t_A 135 IRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA 210 (272)
T ss_dssp CCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG
T ss_pred hhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh
Confidence 653 34 3455555552333445777777777777654 12234556666666666666 55566665554 1
Q ss_pred CCCCH------hhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcC
Q 004856 602 FKPDA------RVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAG 654 (727)
Q Consensus 602 ~~p~~------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 654 (727)
..|+. ..|..+...+...|++++|...++++++++|+++.+...+..+....+
T Consensus 211 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 211 PGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp GGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred cccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 12331 356667777889999999999999999999999888887776655544
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-13 Score=152.52 Aligned_cols=245 Identities=13% Similarity=0.132 Sum_probs=116.2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHH
Q 004856 470 SSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD-LITFLGLLTA 547 (727)
Q Consensus 470 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~ 547 (727)
...++.|...|.+.|++++|++.|++.....| +...|+.+..+|.+.|++++|++.|++.++ +.|+ ...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 44455555555555555555555554322223 344555555555555555555555555554 2342 4445555555
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHHcCCHHH
Q 004856 548 CVNAGLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGHMDEARELVKDM-PFKPD-ARVWGPLLSACKMHSETEL 624 (727)
Q Consensus 548 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~ 624 (727)
+...|++++|++.|++..+. .|+ ...|..+..+|.+.|++++|++.|+++ .+.|+ ...|..+...+...|++++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 55555555555555555432 232 344555555555555555555555544 33332 2344444444555555555
Q ss_pred HHHHHHHHHccCCCCc------chHHHHHHHHHhcCChhH--HHH----HHHHHHhCCCccCCceeEE----EECCEEEE
Q 004856 625 AELTAEKLISMEPENA------GNYVLLSNIYAAAGKWNG--VAK----MRTFLRDRGLKKTPGCSWI----EIGKLVHE 688 (727)
Q Consensus 625 A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~--a~~----~~~~m~~~~~~~~~~~~~~----~~~~~~~~ 688 (727)
|++.+++++++.|+.. ..+......+......+. +.+ ......... +.+..... .-+....|
T Consensus 164 A~~~~~kal~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~aia~r~~~~~~~~~~~~~--~~~~~~~~~~~~~~~klrIG 241 (723)
T 4gyw_A 164 YDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLH--KPPYEHPKDLKLSDGRLRVG 241 (723)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCSSCTTGGGGSCCCHHHHHHHHHHHHHHHHHHHHTTT--CCCCCCCCSSTTTTTCEEEE
T ss_pred HHHHHHHHHHhChhHHhhccCcccchhhhhhhhcCHHHHHHHHHHHHHhhhhhhhccc--CccccCccccccccccceee
Confidence 5555555544322100 000000000000000000 000 001111000 00000000 11235899
Q ss_pred EEeCC-CCCcChHHHHHHHHHH--HHHHHcccccCc
Q 004856 689 FWAAD-QSHPQADAIYTILGIL--ELEIMEGRRESS 721 (727)
Q Consensus 689 f~~~d-~~hp~~~~i~~~l~~l--~~~~~~~~~~~~ 721 (727)
|+|+| ++||....+...++.+ .+++..+|+.+.
T Consensus 242 yvS~df~~H~v~~~~~~~~~~~d~~~fei~~y~~~~ 277 (723)
T 4gyw_A 242 YVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSP 277 (723)
T ss_dssp EEESCSSSSHHHHHHTTHHHHSCTTTEEEEEEESSC
T ss_pred eechhhccCcHHHHHHHHHHHhccCceeEEEEEcCC
Confidence 99999 9999999999999998 788888887654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.48 E-value=2.6e-12 Score=131.52 Aligned_cols=246 Identities=9% Similarity=-0.011 Sum_probs=193.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCC-hHHHHHHHHHHHHhCCCchHhHHHHHH
Q 004856 400 VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVD-FVTIINILPACVNIGA-LEHVKYLHGYSMKLGLNSLSSVNTAIF 477 (727)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li 477 (727)
...|+.+...+.+.|++++|+..|++.+.. .|+ ...|..+..++...|+ +++|...++.+++.. +.+...|..+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 356777778888888888888888888875 344 5566777777888886 888888888888876 44677788888
Q ss_pred HHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHh-cCCH
Q 004856 478 ISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVN-AGLV 554 (727)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~-~g~~ 554 (727)
.+|.+.|++++|...|++.....| +...|..+..++.+.|++++|+..|+++++. .| +...|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcc
Confidence 888999999999999998544344 7789999999999999999999999999984 56 57889999999988 6665
Q ss_pred HHH-----HHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcC--CHHHHHHHHHhCCCCCC-HhhHHHHHHHHHHcC-----
Q 004856 555 EEG-----RIIFKEMKESYGYEPS-QEHYASMVNLLGRAG--HMDEARELVKDMPFKPD-ARVWGPLLSACKMHS----- 620 (727)
Q Consensus 555 ~~a-----~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g----- 620 (727)
++| +..+++.... .|+ ...|..+..+|.+.| ++++|.+.+.++...|+ ...+..+...+...|
T Consensus 252 ~eA~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccc
Confidence 777 5778888754 454 668888899999888 68999999888755554 456777777777653
Q ss_pred ---C-HHHHHHHHHHH-HccCCCCcchHHHHHHHHHhc
Q 004856 621 ---E-TELAELTAEKL-ISMEPENAGNYVLLSNIYAAA 653 (727)
Q Consensus 621 ---~-~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 653 (727)
+ .++|+.+++++ .+++|.....|..++..+...
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 2 58999999999 899998888888887766543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.48 E-value=2.7e-12 Score=124.44 Aligned_cols=198 Identities=11% Similarity=-0.005 Sum_probs=143.1
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 004856 470 SSVNTAIFISYAKCGCIEMAGELFDEEKIDS-KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC 548 (727)
Q Consensus 470 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 548 (727)
...+..+...|...|++++|...|++..... .+...|..+...|...|++++|++.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 4455666667777777777777777643323 356677777777888888888888888877642 23566777777778
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHH
Q 004856 549 VNAGLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELA 625 (727)
Q Consensus 549 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A 625 (727)
...|++++|..+++++... +..|+ ...+..+...|.+.|++++|.+.++++ ...| +...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888777652 34453 456777777888888888888888776 2233 455677777778888888888
Q ss_pred HHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 626 ELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 626 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
...++++++..|++...+..++.++...|++++|.++++++.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 88888888888877777888888888888888888888877665
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-11 Score=118.55 Aligned_cols=207 Identities=11% Similarity=0.052 Sum_probs=144.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHH
Q 004856 400 VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479 (727)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 479 (727)
...|..+...+...|++++|+..|+++.... +.+...+.. +...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~-----------------------------------la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAA-----------------------------------LAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHH-----------------------------------HHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHH-----------------------------------HHHH
Confidence 3566777777888888888888888777642 122333334 4444
Q ss_pred HHhcCCHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHH
Q 004856 480 YAKCGCIEMAGELFDEEKID-SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEG 557 (727)
Q Consensus 480 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a 557 (727)
|...|++++|.+.|++.... ..+...|..+...|...|++++|++.++++.+.+..| +...+..+..++...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 44555555555555543221 2356677777778888888888888888877633345 355677777888888888888
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004856 558 RIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISM 635 (727)
Q Consensus 558 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 635 (727)
...++++.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +...+..+...+...|+.++|...++++++.
T Consensus 161 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 161 KEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 8888888764 2334667788888888888888888888877 3344 4556677777788899999999999999999
Q ss_pred CCCCcchHH
Q 004856 636 EPENAGNYV 644 (727)
Q Consensus 636 ~p~~~~~~~ 644 (727)
.|+++....
T Consensus 239 ~p~~~~~~~ 247 (252)
T 2ho1_A 239 YPGSLEYQE 247 (252)
T ss_dssp CTTSHHHHH
T ss_pred CCCCHHHHH
Confidence 887765543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.47 E-value=5.3e-12 Score=119.78 Aligned_cols=199 Identities=12% Similarity=0.040 Sum_probs=139.1
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 004856 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA 547 (727)
Q Consensus 469 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 547 (727)
+...+..+...+...|++++|...|++.....| +...|..+...|...|++++|.+.++++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 445556666667777777777777776433233 46677777777777788888888777777642 2356677777777
Q ss_pred HHhc-CCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHH
Q 004856 548 CVNA-GLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETE 623 (727)
Q Consensus 548 ~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~ 623 (727)
+... |++++|...++.+.+. +..|+ ...+..+...+.+.|++++|.+.++++ ...| +...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 7777 7888888887777752 33343 456777777777788888888777776 2333 3556666777777788888
Q ss_pred HHHHHHHHHHccCC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 624 LAELTAEKLISMEP-ENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 624 ~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
+|...++++++..| ++...+..++..+...|+.++|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 88888888887777 77777777777778888888888777776544
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-12 Score=124.85 Aligned_cols=198 Identities=13% Similarity=0.101 Sum_probs=137.9
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 004856 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA 547 (727)
Q Consensus 469 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 547 (727)
....+..+...+...|++++|...|++.....| +...|..+...+...|++++|++.++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 344555566667777888888888877544334 56777778888888888888888888887742 2356777788888
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHH
Q 004856 548 CVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELA 625 (727)
Q Consensus 548 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A 625 (727)
+...|++++|...++++.+. .+.+...+..+...+.+.|++++|.+.++++ ...| +...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888888764 2345667778888888888888888888876 3333 456777777778888888888
Q ss_pred HHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 626 ELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 626 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
+..++++++..|++..++..++.+|...|++++|.+.++++.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 88888888888888888888888888888888888888887665
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.8e-11 Score=118.86 Aligned_cols=228 Identities=8% Similarity=-0.066 Sum_probs=138.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHH
Q 004856 399 TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFI 478 (727)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 478 (727)
++.++..+...|...|++++|+..|++..+.+ +...+..+...+.. |
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~-----------------g------------- 51 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQ-----------------G------------- 51 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH-----------------T-------------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHc-----------------C-------------
Confidence 44556666666777777777777777666522 22333334444444 0
Q ss_pred HHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh----
Q 004856 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK----HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN---- 550 (727)
Q Consensus 479 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~---- 550 (727)
....|++++|...|++... ..+...+..+...|.. .+++++|++.|++..+.+ +...+..+...|..
T Consensus 52 -~~~~~~~~~A~~~~~~a~~-~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~ 126 (273)
T 1ouv_A 52 -QGVEKNLKKAASFYAKACD-LNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVV 126 (273)
T ss_dssp -SSSCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSS
T ss_pred -CCcCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCc
Confidence 0004555555555554322 1245555556666666 666666666666666643 55566666666666
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCH
Q 004856 551 AGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR----AGHMDEARELVKDMPFKPDARVWGPLLSACKM----HSET 622 (727)
Q Consensus 551 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~ 622 (727)
.+++++|...+++..+. + +...+..+...|.. .+++++|.+++++.-...+...+..+...+.. .+++
T Consensus 127 ~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~ 202 (273)
T 1ouv_A 127 TRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNF 202 (273)
T ss_dssp CCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCH
T ss_pred ccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccH
Confidence 66777777777666654 2 44455566666666 66777777777665211244555566666666 7777
Q ss_pred HHHHHHHHHHHccCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhCC
Q 004856 623 ELAELTAEKLISMEPENAGNYVLLSNIYAA----AGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 623 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 670 (727)
++|+..++++.+.+| +..+..++.+|.. .+++++|.+.+++..+.+
T Consensus 203 ~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 203 KEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 777777777777655 5667777777777 777777777777766654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.46 E-value=6.9e-12 Score=118.30 Aligned_cols=193 Identities=12% Similarity=-0.004 Sum_probs=96.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHH
Q 004856 402 SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYA 481 (727)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 481 (727)
.|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+.+.. +.+...+..+...|.
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYV 84 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 33344444444444444444444444321 1122233333333344444444444444433332 222333344444444
Q ss_pred hc-----------CCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 004856 482 KC-----------GCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACV 549 (727)
Q Consensus 482 ~~-----------g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 549 (727)
+. |++++|...|++.....| +...|..+...|...|++++|+..|++..+.. .+...+..+..++.
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~ 162 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYL 162 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHH
Confidence 44 666666666666433234 45666677777777777777777777777654 56666777777777
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 004856 550 NAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM 600 (727)
Q Consensus 550 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 600 (727)
..|++++|+..|+++.+. .+.+...+..+...+.+.|++++|.+.+++.
T Consensus 163 ~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 163 SMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 777777777777777654 1223556666777777777777777776654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.4e-12 Score=125.61 Aligned_cols=215 Identities=13% Similarity=0.026 Sum_probs=142.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHH
Q 004856 400 VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479 (727)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 479 (727)
...|..+...+...|++++|+..|++..+.. | .+...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~----------------------------------~~~~~~~~la~~ 66 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--K----------------------------------EDAIPYINFANL 66 (243)
T ss_dssp -------------------CCTTHHHHHTTC--T----------------------------------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--c----------------------------------ccHHHHHHHHHH
Confidence 3456666666666777777777776666532 2 223344444555
Q ss_pred HHhcCCHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHH
Q 004856 480 YAKCGCIEMAGELFDEEKID-SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558 (727)
Q Consensus 480 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 558 (727)
|.+.|++++|...|++.... +.+...|..+...|...|++++|++.++++.+.. +.+...+..+...+...|++++|.
T Consensus 67 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~ 145 (243)
T 2q7f_A 67 LSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLAL 145 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHH
Confidence 55566666666666653322 3366778888888888899999999998888753 336777888888889999999999
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 004856 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISME 636 (727)
Q Consensus 559 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 636 (727)
..++++.+. .+.+...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++++
T Consensus 146 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 146 PYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999988865 2345778888889999999999999999887 3333 46678888888999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhc
Q 004856 637 PENAGNYVLLSNIYAAA 653 (727)
Q Consensus 637 p~~~~~~~~l~~~~~~~ 653 (727)
|+++.++..+..+....
T Consensus 224 p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 224 PDHMLALHAKKLLGHHH 240 (243)
T ss_dssp TTCHHHHHHHTC-----
T ss_pred cchHHHHHHHHHHHhhc
Confidence 99888887766554433
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.45 E-value=6.6e-12 Score=132.72 Aligned_cols=189 Identities=7% Similarity=-0.042 Sum_probs=146.0
Q ss_pred hHHHHHHHHHHhcC---CHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHHCCCCCChHHHH
Q 004856 471 SVNTAIFISYAKCG---CIEMAGELFDEEKID-SKDIITWNSMISAYAKH----GDWSQCFKLYTQMKQSDVRPDLITFL 542 (727)
Q Consensus 471 ~~~~~li~~~~~~g---~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~t~~ 542 (727)
..+..|..+|.+.| +.++|...|++.... .++...+..+...|... +++++|++.|++.. .| +...+.
T Consensus 177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~ 252 (452)
T 3e4b_A 177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWV 252 (452)
T ss_dssp THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHH
T ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHH
Confidence 36667777777788 888888888874332 45566656677777554 79999999999987 33 556666
Q ss_pred HHHHH-H--HhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC-----CHHHHHHHHHhCCCCCCHhhHHHHHH
Q 004856 543 GLLTA-C--VNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG-----HMDEARELVKDMPFKPDARVWGPLLS 614 (727)
Q Consensus 543 ~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~p~~~~~~~ll~ 614 (727)
.|... + ...+++++|..+|++..+. | +...+..|...|. .| ++++|.++|++.- ..+...+..|..
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~ 326 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQ 326 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHH
Confidence 66666 3 4689999999999999875 4 6677778888887 55 9999999999998 556667777766
Q ss_pred HHHH----cCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 004856 615 ACKM----HSETELAELTAEKLISMEPENAGNYVLLSNIYAA----AGKWNGVAKMRTFLRDRGL 671 (727)
Q Consensus 615 ~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 671 (727)
.|.. ..+.++|...++++.+. .++.+...|+.+|.. ..+.++|..+++...+.|.
T Consensus 327 ~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 327 IYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 6655 34999999999999874 467888999999885 4588999999999888764
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.9e-11 Score=118.80 Aligned_cols=224 Identities=9% Similarity=-0.061 Sum_probs=155.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-ChhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004856 368 QVSVHNSLIDMYCECEDLNCARKIFDSVKTK-TVVSWSSMIKGYVT----HDQSLEALRLFSEMKLEGVEVDFVTIINIL 442 (727)
Q Consensus 368 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 442 (727)
+..++..+...|...|++++|.+.|++..++ +..++..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 5567788889999999999999999987655 56788889999999 999999999999988765 455555555
Q ss_pred HHHhc----CCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHH---
Q 004856 443 PACVN----IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK--- 515 (727)
Q Consensus 443 ~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~--- 515 (727)
..+.. .+++++|...++...+.+ +...+..+...|..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~------------------------------------~~~a~~~lg~~~~~~~~ 125 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK------------------------------------YAEGCASLGGIYHDGKV 125 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT------------------------------------CHHHHHHHHHHHHHCSS
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC------------------------------------CccHHHHHHHHHHcCCC
Confidence 55555 555555555555544432 44555556666666
Q ss_pred -cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----
Q 004856 516 -HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN----AGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR---- 586 (727)
Q Consensus 516 -~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~---- 586 (727)
.+++++|++.|++..+.+ +...+..+...+.. .+++++|...+++..+. + +...+..+...|..
T Consensus 126 ~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~ 198 (273)
T 1ouv_A 126 VTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGA 198 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSS
T ss_pred cccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCC
Confidence 667777777777766644 44555566666666 67777777777776654 2 34556666677776
Q ss_pred cCCHHHHHHHHHhC-CCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHccCCC
Q 004856 587 AGHMDEARELVKDM-PFKPDARVWGPLLSACKM----HSETELAELTAEKLISMEPE 638 (727)
Q Consensus 587 ~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p~ 638 (727)
.+++++|.+++++. ... +...+..+...+.. .++.++|...++++.+.+|+
T Consensus 199 ~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 199 TKNFKEALARYSKACELE-NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CccHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 77777777777765 222 24556666666666 77888888888888877774
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.44 E-value=6e-12 Score=128.79 Aligned_cols=228 Identities=10% Similarity=0.017 Sum_probs=193.1
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCC-HHHHHHHHHhccCCCC-CHHHHHHHHHHH
Q 004856 436 VTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGC-IEMAGELFDEEKIDSK-DIITWNSMISAY 513 (727)
Q Consensus 436 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~-~~~~~~~li~~~ 513 (727)
..+..+...+...|++++|...++.+++.. +.+..+|..+..+|.+.|+ +++|+..|++.....| +...|+.+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456667777888999999999999999876 5567888889999999997 9999999999654445 778999999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh-cCCHH
Q 004856 514 AKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR-AGHMD 591 (727)
Q Consensus 514 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~ 591 (727)
...|++++|+..|+++++. .| +...|..+..++...|++++|+..++++.+. -+-+...|+.+..+|.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999984 56 6889999999999999999999999999975 23357789999999999 66657
Q ss_pred HH-----HHHHHhC-CCCC-CHhhHHHHHHHHHHcC--CHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcC--------
Q 004856 592 EA-----RELVKDM-PFKP-DARVWGPLLSACKMHS--ETELAELTAEKLISMEPENAGNYVLLSNIYAAAG-------- 654 (727)
Q Consensus 592 ~A-----~~~~~~~-~~~p-~~~~~~~ll~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 654 (727)
+| ++.++++ ...| +...|..+...+...| ++++|+..++++ +.+|+++.++..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4777766 4566 4568888888888888 689999999998 899999999999999999975
Q ss_pred -ChhHHHHHHHHH-HhC
Q 004856 655 -KWNGVAKMRTFL-RDR 669 (727)
Q Consensus 655 -~~~~a~~~~~~m-~~~ 669 (727)
..++|+++++++ .+.
T Consensus 332 ~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 332 DILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 258999999988 444
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.44 E-value=4e-11 Score=113.66 Aligned_cols=209 Identities=11% Similarity=-0.030 Sum_probs=135.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHH
Q 004856 400 VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479 (727)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 479 (727)
+..|..+...+...|++++|++.|++..+.. | .+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~----------------------------------~~~~~~~~l~~~ 51 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD--P----------------------------------KNELAWLVRAEI 51 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T----------------------------------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--c----------------------------------cchHHHHHHHHH
Confidence 3455556666666666666666666655432 1 122333444444
Q ss_pred HHhcCCHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHH
Q 004856 480 YAKCGCIEMAGELFDEEKID-SKDIITWNSMISAYAKH-GDWSQCFKLYTQMKQSDVRPD-LITFLGLLTACVNAGLVEE 556 (727)
Q Consensus 480 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~ 556 (727)
|...|++++|...|++.... +.+...|..+...+... |++++|+..++++.+.+..|+ ...+..+..++...|++++
T Consensus 52 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 131 (225)
T 2vq2_A 52 YQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGL 131 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHH
Confidence 55555555555555543221 23556677777777777 888888888887776333343 5567777777888888888
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004856 557 GRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP--DARVWGPLLSACKMHSETELAELTAEKLI 633 (727)
Q Consensus 557 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 633 (727)
|...++++.+. .+.+...+..++..+.+.|++++|.+.++++ ...| +...+..+...+...|+.+.|...++.+.
T Consensus 132 A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 132 AEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 88888877754 2234667777888888888888888888776 2233 44556555566788888888888888888
Q ss_pred ccCCCCcchHHHH
Q 004856 634 SMEPENAGNYVLL 646 (727)
Q Consensus 634 ~~~p~~~~~~~~l 646 (727)
+..|+++.....+
T Consensus 210 ~~~p~~~~~~~~l 222 (225)
T 2vq2_A 210 ANFPYSEELQTVL 222 (225)
T ss_dssp HHCTTCHHHHHHH
T ss_pred HhCCCCHHHHHHh
Confidence 8888777665443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.1e-11 Score=119.64 Aligned_cols=234 Identities=10% Similarity=0.046 Sum_probs=179.5
Q ss_pred hhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCh----hHHHHHH
Q 004856 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT--KTV----VSWSSMI 407 (727)
Q Consensus 334 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li 407 (727)
...+......+...|++++|...+..+++.. +.+..++..+...|...|++++|.+.|++..+ .+. .+|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3445566778889999999999999999875 34556788899999999999999999987754 222 3488899
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHH
Q 004856 408 KGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIE 487 (727)
Q Consensus 408 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 487 (727)
..|...|++++|+..|++..+.. +.+..++..+...|...|+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~------------------------------------~~~~~~~~~l~~~~~~~~~~~ 125 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD------------------------------------TTRLDMYGQIGSYFYNKGNFP 125 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS------------------------------------TTCTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC------------------------------------cccHHHHHHHHHHHHHccCHH
Confidence 99999999999999999887632 223345666777788889999
Q ss_pred HHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCC---HHHHHHHHH
Q 004856 488 MAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGL---VEEGRIIFK 562 (727)
Q Consensus 488 ~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~---~~~a~~~~~ 562 (727)
+|...|++.....| +...|..+...+...+++++|++.|++..+. .| +...+..+..++...|+ +++|...++
T Consensus 126 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 203 (272)
T 3u4t_A 126 LAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYE 203 (272)
T ss_dssp HHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHH
T ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHH
Confidence 99999988665444 5667777773444556999999999999884 45 46778888888888888 788888888
Q ss_pred HhHHhcCCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH
Q 004856 563 EMKESYGYEPS------QEHYASMVNLLGRAGHMDEARELVKDM-PFKPDA 606 (727)
Q Consensus 563 ~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~ 606 (727)
++.+...-.|+ ...|..+...|.+.|++++|.+.++++ ...|+.
T Consensus 204 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 254 (272)
T 3u4t_A 204 KLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTN 254 (272)
T ss_dssp HHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccH
Confidence 88765323344 257788889999999999999999988 455643
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.3e-11 Score=113.15 Aligned_cols=164 Identities=16% Similarity=0.163 Sum_probs=136.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 004856 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASM 580 (727)
Q Consensus 502 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 580 (727)
+...|..+...|...|++++|++.|++.++. .| +..++..+..++...|++++|...+...... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 5667888888888999999999999988874 56 5677888888899999999999998888764 23346677778
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhH
Q 004856 581 VNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNG 658 (727)
Q Consensus 581 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 658 (727)
...+...+++++|.+.+.+. ...| +...+..+...+...|++++|+..++++++++|.++.++..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 88888899999999888877 3344 456777777789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 004856 659 VAKMRTFLRDR 669 (727)
Q Consensus 659 a~~~~~~m~~~ 669 (727)
|.+.+++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999987765
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.2e-12 Score=135.35 Aligned_cols=262 Identities=12% Similarity=0.026 Sum_probs=162.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHhcCCChHHHHHHHHHHHHh----C-CCchHhHHHH
Q 004856 406 MIKGYVTHDQSLEALRLFSEMKLEGVEVD-F----VTIINILPACVNIGALEHVKYLHGYSMKL----G-LNSLSSVNTA 475 (727)
Q Consensus 406 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ 475 (727)
+...+...|++++|+..|++..+.+ |+ . ..+..+...+...|++++|...+..+.+. + .+.....+..
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 3344445555555555555554432 21 1 23444444455555555555554444332 1 1223345555
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCC------CC-CHHHHHHHHHHHHHcCC-----------------hHHHHHHHHHHHH
Q 004856 476 IFISYAKCGCIEMAGELFDEEKID------SK-DIITWNSMISAYAKHGD-----------------WSQCFKLYTQMKQ 531 (727)
Q Consensus 476 li~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~ 531 (727)
+...|...|++++|...|++.... .+ ....|..+...|...|+ +++|++.+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 666666777777776666652211 11 23466677777777787 7777777776654
Q ss_pred C----CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 004856 532 S----DVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS----QEHYASMVNLLGRAGHMDEARELVKDM-P 601 (727)
Q Consensus 532 ~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 601 (727)
. +-.| ...++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.+++. .
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2 1112 2346777788888888888888888877653111112 236777888888888888888888776 1
Q ss_pred CC---C----CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC------cchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004856 602 FK---P----DARVWGPLLSACKMHSETELAELTAEKLISMEPEN------AGNYVLLSNIYAAAGKWNGVAKMRTFLRD 668 (727)
Q Consensus 602 ~~---p----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 668 (727)
.. . ...++..+...+...|++++|...+++++++.+.. ..++..++.+|...|++++|.+++++..+
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11 1 13466667777888999999999999888764432 34777888899999999999998888654
Q ss_pred C
Q 004856 669 R 669 (727)
Q Consensus 669 ~ 669 (727)
.
T Consensus 372 ~ 372 (411)
T 4a1s_A 372 L 372 (411)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=7.3e-12 Score=130.90 Aligned_cols=271 Identities=13% Similarity=0.029 Sum_probs=133.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-C----hhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HH
Q 004856 369 VSVHNSLIDMYCECEDLNCARKIFDSVKT--K-T----VVSWSSMIKGYVTHDQSLEALRLFSEMKLE----GVEVD-FV 436 (727)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~ 436 (727)
...+..+...+...|++++|...|++..+ + + ...|..+...|...|++++|+..|++.... +-.|. ..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 34455566667777777777777765542 1 2 235666666777777777777777665432 11111 23
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhC----CC-chHhHHHHHHHHHHhcCC--------------------HHHHHH
Q 004856 437 TIINILPACVNIGALEHVKYLHGYSMKLG----LN-SLSSVNTAIFISYAKCGC--------------------IEMAGE 491 (727)
Q Consensus 437 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~li~~~~~~g~--------------------~~~A~~ 491 (727)
.+..+...+...|++++|...+..+.+.. -. ....++..+...|...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 44455555666666666666655554421 10 112344555555555555 555555
Q ss_pred HHHhccCC---CC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----hHHHHHHHHHHHhcCCHHHHHH
Q 004856 492 LFDEEKID---SK----DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDV-RPD----LITFLGLLTACVNAGLVEEGRI 559 (727)
Q Consensus 492 ~~~~~~~~---~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~a~~ 559 (727)
.+++.... .+ ....|..+...|...|++++|+..+++..+..- .++ ..++..+...+...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 55542100 01 123444555555555555555555555543100 011 1244555555555555555555
Q ss_pred HHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC-C---CCCC----HhhHHHHHHHHHHcCCHHHHHH
Q 004856 560 IFKEMKESYGYEPS----QEHYASMVNLLGRAGHMDEARELVKDM-P---FKPD----ARVWGPLLSACKMHSETELAEL 627 (727)
Q Consensus 560 ~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~ll~~~~~~g~~~~A~~ 627 (727)
.+++......-.++ ..++..+...|.+.|++++|.+.+++. . ..++ ..++..+...+...|++++|..
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 55554432100011 234445555555555555555555544 0 0011 2234444444555555555555
Q ss_pred HHHHHHccCCCC
Q 004856 628 TAEKLISMEPEN 639 (727)
Q Consensus 628 ~~~~~~~~~p~~ 639 (727)
.+++++++.+..
T Consensus 329 ~~~~al~~~~~~ 340 (406)
T 3sf4_A 329 FAEKHLEISREV 340 (406)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 555555554433
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=7.5e-12 Score=122.99 Aligned_cols=220 Identities=9% Similarity=0.001 Sum_probs=179.9
Q ss_pred hcCCChHHHHHHHHHHHHhCC---CchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHH
Q 004856 446 VNIGALEHVKYLHGYSMKLGL---NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQ 521 (727)
Q Consensus 446 ~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~ 521 (727)
...|++++|...++.+.+... +.+..++..+...|...|++++|...|++.....| +...|..+...|...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 455789999999999988642 23567888899999999999999999998554344 68899999999999999999
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 004856 522 CFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM- 600 (727)
Q Consensus 522 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~- 600 (727)
|++.|++..+.. +.+...+..+..++...|++++|...++++.+. .|+..........+...|++++|...+++.
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999853 336788999999999999999999999999865 455554555556667789999999999776
Q ss_pred CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCC----CcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 601 PFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPE----NAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 601 ~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
...|+......+...+...++.++|...++++++..|. +...+..++.+|...|++++|...+++..+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 172 EKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 22333333334666688888999999999999987763 3688899999999999999999999998766
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=6.3e-12 Score=127.40 Aligned_cols=262 Identities=14% Similarity=0.045 Sum_probs=178.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhcCCChHHHHHHHHHHHHh----CCC-chHhHHHH
Q 004856 406 MIKGYVTHDQSLEALRLFSEMKLEGVEVD-----FVTIINILPACVNIGALEHVKYLHGYSMKL----GLN-SLSSVNTA 475 (727)
Q Consensus 406 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ 475 (727)
....+...|++++|+..|++..+.. |+ ...+..+...+...|++++|...+..+.+. +.. ....++..
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 3445556666666666666665542 22 234455555666666666666665554432 212 22455666
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCC---CCC----HHHHHHHHHHHHHcCC--------------------hHHHHHHHHH
Q 004856 476 IFISYAKCGCIEMAGELFDEEKID---SKD----IITWNSMISAYAKHGD--------------------WSQCFKLYTQ 528 (727)
Q Consensus 476 li~~~~~~g~~~~A~~~~~~~~~~---~~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~ 528 (727)
+...|...|++++|...+++.... .++ ..++..+...|...|+ +++|++.+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 777788888888888877763211 122 3467777888888888 8888888877
Q ss_pred HHHC----CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 004856 529 MKQS----DVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS----QEHYASMVNLLGRAGHMDEARELVKD 599 (727)
Q Consensus 529 m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~ 599 (727)
.... +-.| ...++..+...+...|++++|...+++..+...-.++ ...+..+...+...|++++|.+.+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6542 1112 2346778888889999999999999887643111112 33778888999999999999999887
Q ss_pred C-C---CCCC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC------cchHHHHHHHHHhcCChhHHHHHHHH
Q 004856 600 M-P---FKPD----ARVWGPLLSACKMHSETELAELTAEKLISMEPEN------AGNYVLLSNIYAAAGKWNGVAKMRTF 665 (727)
Q Consensus 600 ~-~---~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~ 665 (727)
. . ..++ ..++..+...+...|++++|...++++++..|.. ..++..++.+|...|++++|.+.+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 6 1 1111 3466667777999999999999999998865432 34778899999999999999999998
Q ss_pred HHhC
Q 004856 666 LRDR 669 (727)
Q Consensus 666 m~~~ 669 (727)
..+.
T Consensus 329 a~~~ 332 (338)
T 3ro2_A 329 HLEI 332 (338)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8765
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.9e-12 Score=136.41 Aligned_cols=193 Identities=8% Similarity=-0.050 Sum_probs=153.5
Q ss_pred hHhHHHHHHHHHHhcCCH-HHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 004856 469 LSSVNTAIFISYAKCGCI-EMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLT 546 (727)
Q Consensus 469 ~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 546 (727)
+...+..+...|...|++ ++|.+.|++.....| +...|..+...|...|++++|++.|++..+ +.|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHHH
Confidence 445555555566666666 666666665332234 577888888888888899999998888887 4577778888888
Q ss_pred HHHhc---------CCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc--------CCHHHHHHHHHhC-CCCC----
Q 004856 547 ACVNA---------GLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA--------GHMDEARELVKDM-PFKP---- 604 (727)
Q Consensus 547 ~~~~~---------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~~~~A~~~~~~~-~~~p---- 604 (727)
++... |++++|+..++++.+. .+.+...|..+..+|... |++++|++.|++. ...|
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 88888 8899999999888865 233467888888888888 8899999999887 4455
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 004856 605 DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTF 665 (727)
Q Consensus 605 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 665 (727)
+...|..+...+...|++++|+..++++++++|+++.++..++.++...|++++|.+.+.+
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5678888888899999999999999999999999999999999999999999999875543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.36 E-value=3.9e-09 Score=115.27 Aligned_cols=218 Identities=6% Similarity=-0.059 Sum_probs=164.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHH-HHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 004856 418 EALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK-YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEE 496 (727)
Q Consensus 418 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 496 (727)
.+..+|++.... ..-+...|.....-+...|+.+.|. .+++...... +.+...+-..+....+.|+++.|..+|++.
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 455677777764 2335566666666677778888886 9999888743 556677778888899999999999999985
Q ss_pred cCC-----------CCC------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCChHHHHHHHHHHHhc-
Q 004856 497 KID-----------SKD------------IITWNSMISAYAKHGDWSQCFKLYTQMKQS-DVRPDLITFLGLLTACVNA- 551 (727)
Q Consensus 497 ~~~-----------~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~- 551 (727)
... .|+ ...|...+....+.|+.+.|..+|.+.++. + .+....|...+..-.+.
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhC
Confidence 421 132 236888888888899999999999999885 2 12334444333333333
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC----CHhhHHHHHHHHHHcCCHHHHH
Q 004856 552 GLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP----DARVWGPLLSACKMHSETELAE 626 (727)
Q Consensus 552 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~ll~~~~~~g~~~~A~ 626 (727)
++.+.|..+|+...+.+ +-+...+...++.....|+.+.|..+|++. ...| ....|...+..-..+|+.+.+.
T Consensus 484 ~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp SCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred CCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 45899999999999863 345667778889888999999999999987 3333 3458888888889999999999
Q ss_pred HHHHHHHccCCCCc
Q 004856 627 LTAEKLISMEPENA 640 (727)
Q Consensus 627 ~~~~~~~~~~p~~~ 640 (727)
.+.+++.+..|+++
T Consensus 562 ~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 562 TLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHHSTTCC
T ss_pred HHHHHHHHhCCCCc
Confidence 99999999999754
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=1e-11 Score=129.76 Aligned_cols=269 Identities=12% Similarity=-0.012 Sum_probs=180.4
Q ss_pred CChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----C----C
Q 004856 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ---VSVHNSLIDMYCECEDLNCARKIFDSVKT-----K----T 399 (727)
Q Consensus 332 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~----~ 399 (727)
+....+......+...|++++|...++.+++...... ..++..+...|...|++++|...|++... . .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3444555666677788888888888888887742211 24677777888888888888887766431 1 2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhcCCC--------------------hHHH
Q 004856 400 VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV-EVD----FVTIINILPACVNIGA--------------------LEHV 454 (727)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~~~--------------------~~~a 454 (727)
..+|..+...|...|++++|+..+++...... .++ ..++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 34677777888888888888888887765210 011 3356666777777888 8888
Q ss_pred HHHHHHHHHh----CC-CchHhHHHHHHHHHHhcCCHHHHHHHHHhccCC---CCC----HHHHHHHHHHHHHcCChHHH
Q 004856 455 KYLHGYSMKL----GL-NSLSSVNTAIFISYAKCGCIEMAGELFDEEKID---SKD----IITWNSMISAYAKHGDWSQC 522 (727)
Q Consensus 455 ~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~----~~~~~~li~~~~~~g~~~~A 522 (727)
...+....+. +. +....++..+...|...|++++|...|++.... .++ ...|..+...|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 8877765542 21 122446677777888888888888888873321 222 23677777888888888888
Q ss_pred HHHHHHHHHCCC-CCC----hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHH
Q 004856 523 FKLYTQMKQSDV-RPD----LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS----QEHYASMVNLLGRAGHMDEA 593 (727)
Q Consensus 523 ~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A 593 (727)
+..+++..+..- .++ ..++..+...+...|++++|...++...+...-.++ ..++..+...|.+.|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 888887765210 011 456777788888888888888888877643111111 44677778888888888888
Q ss_pred HHHHHhC
Q 004856 594 RELVKDM 600 (727)
Q Consensus 594 ~~~~~~~ 600 (727)
.+.+++.
T Consensus 327 ~~~~~~a 333 (406)
T 3sf4_A 327 MHFAEKH 333 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.34 E-value=4.4e-10 Score=112.38 Aligned_cols=221 Identities=8% Similarity=-0.003 Sum_probs=151.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-------cCCCh-------HHHHHHHHHHHHhCCCchHhHHHHHHHHHHh
Q 004856 417 LEALRLFSEMKLEGVEVDFVTIINILPACV-------NIGAL-------EHVKYLHGYSMKLGLNSLSSVNTAIFISYAK 482 (727)
Q Consensus 417 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 482 (727)
++|+.+|++..... +-+...|..+...+. ..|+. ++|..+++..++.-.+.+...+..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56666777666531 223334444444433 34654 6777777777763223455677777888888
Q ss_pred cCCHHHHHHHHHhccCCCCC-HH-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHH-hcCCHHHHHH
Q 004856 483 CGCIEMAGELFDEEKIDSKD-II-TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACV-NAGLVEEGRI 559 (727)
Q Consensus 483 ~g~~~~A~~~~~~~~~~~~~-~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~g~~~~a~~ 559 (727)
.|++++|..+|++.....|+ .. .|..++..+.+.|++++|..+|++..+.. +++...|........ ..|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888886554553 33 78888888888888888888888888743 234444544333322 2688888888
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-C---CCC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004856 560 IFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-P---FKP--DARVWGPLLSACKMHSETELAELTAEKLI 633 (727)
Q Consensus 560 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 633 (727)
+|+...+.+ +-+...|..++..+.+.|++++|..+|++. . ..| ....|..++......|+.+.|..++++++
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888887652 234677888888888888888888888877 2 344 34578888888888888888888888888
Q ss_pred ccCCCCcc
Q 004856 634 SMEPENAG 641 (727)
Q Consensus 634 ~~~p~~~~ 641 (727)
+..|++..
T Consensus 269 ~~~p~~~~ 276 (308)
T 2ond_A 269 TAFREEYE 276 (308)
T ss_dssp HHTTTTTS
T ss_pred HHcccccc
Confidence 88886553
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.34 E-value=3.6e-11 Score=110.14 Aligned_cols=168 Identities=13% Similarity=0.032 Sum_probs=141.8
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 004856 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA 547 (727)
Q Consensus 469 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 547 (727)
++.+|..+...|.+.|++++|...|++.....| +...|..+...|.+.|++++|+..+.+..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 466788888889999999999999998544344 67889999999999999999999999998843 3356778888888
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHH
Q 004856 548 CVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELA 625 (727)
Q Consensus 548 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A 625 (727)
+...++++.+...+...... .+.+...+..+...|.+.|++++|++.+++. ...| +..+|..+...+...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 99999999999999998864 3345778889999999999999999999987 4455 556788888889999999999
Q ss_pred HHHHHHHHccCCCC
Q 004856 626 ELTAEKLISMEPEN 639 (727)
Q Consensus 626 ~~~~~~~~~~~p~~ 639 (727)
+..++++++++|++
T Consensus 161 ~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 161 VKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHTTHHH
T ss_pred HHHHHHHHhCCccC
Confidence 99999999999864
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.4e-11 Score=127.30 Aligned_cols=266 Identities=15% Similarity=0.037 Sum_probs=162.8
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHhcCCCC---------ChhHHHHH
Q 004856 340 AVSSISTMKNIEWGKQMHANVLRNGSDYQV----SVHNSLIDMYCECEDLNCARKIFDSVKTK---------TVVSWSSM 406 (727)
Q Consensus 340 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l 406 (727)
+...+...|++++|...++.+++.... +. .++..+...|...|++++|...|++..+. ...+|..+
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 334455556666666666665555311 11 24445555555555555555554443210 11234444
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCchHhHHHHHHHHHHhcCC
Q 004856 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG-LNSLSSVNTAIFISYAKCGC 485 (727)
Q Consensus 407 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~ 485 (727)
...|...|++++|+..|++..... .+.+ .+.....+..+...|...|+
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~~g~ 181 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLA-------------------------------RQLGDRLSEGRALYNLGNVYHAKGK 181 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHH-------------------------------HHhhchHHHHHHHHHHHHHHHHcCc
Confidence 444444455555544444433210 0001 11223455566666777777
Q ss_pred -----------------HHHHHHHHHhccCC-----C-C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC---
Q 004856 486 -----------------IEMAGELFDEEKID-----S-K-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDV-RPD--- 537 (727)
Q Consensus 486 -----------------~~~A~~~~~~~~~~-----~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~--- 537 (727)
+++|...+++.... . + ....|..+...|...|++++|+..+++..+..- .++
T Consensus 182 ~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 261 (411)
T 4a1s_A 182 HLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAA 261 (411)
T ss_dssp HHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred ccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHH
Confidence 77777666652210 1 1 234777788889999999999999988876310 012
Q ss_pred -hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC-CC------CC-
Q 004856 538 -LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS----QEHYASMVNLLGRAGHMDEARELVKDM-PF------KP- 604 (727)
Q Consensus 538 -~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~------~p- 604 (727)
..++..+..++...|++++|...+++......-..+ ...+..+...|.+.|++++|.+.+++. .. .+
T Consensus 262 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 341 (411)
T 4a1s_A 262 ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIG 341 (411)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHH
Confidence 236788888999999999999999887754111111 457788899999999999999999877 11 11
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 004856 605 DARVWGPLLSACKMHSETELAELTAEKLISMEP 637 (727)
Q Consensus 605 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 637 (727)
...++..+...+...|++++|...+++++++.+
T Consensus 342 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 342 EARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 123667777779999999999999999998766
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=9.7e-11 Score=121.37 Aligned_cols=223 Identities=8% Similarity=-0.043 Sum_probs=133.7
Q ss_pred HhcCCChHHHHHHHHHHHHh----CCCc-hHhHHHHHHHHHHhcCCHHHHHHHHHhccCC---CC-----CHHHHHHHHH
Q 004856 445 CVNIGALEHVKYLHGYSMKL----GLNS-LSSVNTAIFISYAKCGCIEMAGELFDEEKID---SK-----DIITWNSMIS 511 (727)
Q Consensus 445 ~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~-----~~~~~~~li~ 511 (727)
+...|++++|...+..+.+. +-++ ...++..+...|...|++++|...+++.... .+ ...+++.+..
T Consensus 113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 192 (383)
T 3ulq_A 113 ELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFAT 192 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 34445555555555544432 1111 2344555556666666666666666552110 11 1346677777
Q ss_pred HHHHcCChHHHHHHHHHHHHCCC-CCC----hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc---CCCCC-hhHHHHHHH
Q 004856 512 AYAKHGDWSQCFKLYTQMKQSDV-RPD----LITFLGLLTACVNAGLVEEGRIIFKEMKESY---GYEPS-QEHYASMVN 582 (727)
Q Consensus 512 ~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~~~li~ 582 (727)
.|...|++++|++.|++..+..- .++ ..++..+..+|...|++++|...+++..+.. +..|+ ..++..+..
T Consensus 193 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 272 (383)
T 3ulq_A 193 NFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQ 272 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 77788888888887777664210 011 2367777778888888888888887766510 12132 456777778
Q ss_pred HHHhcCCHHHHHHHHHhC-C-----CCCCH-hhHHHHHHHHHHcCC---HHHHHHHHHHHHccCCCCcchHHHHHHHHHh
Q 004856 583 LLGRAGHMDEARELVKDM-P-----FKPDA-RVWGPLLSACKMHSE---TELAELTAEKLISMEPENAGNYVLLSNIYAA 652 (727)
Q Consensus 583 ~~~~~g~~~~A~~~~~~~-~-----~~p~~-~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 652 (727)
.|.+.|++++|.+.+++. . ..|.. ..+..+...+...|+ .++|...+++. ...|.....+..++.+|..
T Consensus 273 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~ 351 (383)
T 3ulq_A 273 IHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHE 351 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHH
Confidence 888888888888887766 1 12222 223444445667777 66666666665 2233345567788888888
Q ss_pred cCChhHHHHHHHHHHh
Q 004856 653 AGKWNGVAKMRTFLRD 668 (727)
Q Consensus 653 ~g~~~~a~~~~~~m~~ 668 (727)
.|++++|.+++++..+
T Consensus 352 ~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 352 RKNFQKASAYFLKVEQ 367 (383)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 8888888888887654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.29 E-value=5.4e-09 Score=114.22 Aligned_cols=437 Identities=10% Similarity=0.011 Sum_probs=273.0
Q ss_pred CCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCC---hHHHH
Q 004856 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS---LEDAK 288 (727)
Q Consensus 212 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~ 288 (727)
....+-+..|++-.... +-|..+|..++..+.+.+.++.++.+|+.++.. ++.....|...+..-.+.+. .+.+.
T Consensus 46 ~~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~ 123 (679)
T 4e6h_A 46 RDESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIE 123 (679)
T ss_dssp CCCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred cCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHH
Confidence 34555565666665554 457788889999888888899999999998877 46667788888888888888 88888
Q ss_pred HHHhcCCC-----CCeehHHHHHHHHHhcCCc----hH----HHHHHHHHHH-cCC-CCCh-hhHHHHHHHhhc------
Q 004856 289 MLFDKMSD-----KDRVVWNIMISAYYQSGFP----KE----SLELLMCMVR-SGF-RADL-FTAIAAVSSIST------ 346 (727)
Q Consensus 289 ~~~~~~~~-----~~~~~~~~li~~~~~~g~~----~~----A~~~~~~m~~-~g~-~p~~-~t~~~ll~~~~~------ 346 (727)
.+|++... +++..|..-+.-..+.++. ++ ..++|+.... .|. .|+. ..|...+.....
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence 88888654 5666777766655555443 22 3356655433 355 4543 344444433221
Q ss_pred ---CCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 004856 347 ---MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLF 423 (727)
Q Consensus 347 ---~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 423 (727)
.++++.+..+|..++......-..+|......-...+. ..+.++ +.- ...+++.|...+
T Consensus 204 ~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~---------------~~e--~~~~y~~Ar~~~ 265 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRH---------------IGE--LSAQYMNARSLY 265 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHH---------------HHH--HHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHH---------------HHH--hhHHHHHHHHHH
Confidence 12345566666666532111111222221111100000 001111 100 112333444444
Q ss_pred HHHHH--CCCC---------------C-----C---HHHHHHHHHHHhcCC-------ChHHHHHHHHHHHHhCCCchHh
Q 004856 424 SEMKL--EGVE---------------V-----D---FVTIINILPACVNIG-------ALEHVKYLHGYSMKLGLNSLSS 471 (727)
Q Consensus 424 ~~m~~--~g~~---------------p-----~---~~t~~~ll~a~~~~~-------~~~~a~~~~~~~~~~~~~~~~~ 471 (727)
.++.. .++. | + ...|...+.---..+ ..+.+..+++.++..- +....
T Consensus 266 ~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~ 344 (679)
T 4e6h_A 266 QDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPE 344 (679)
T ss_dssp HHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHH
T ss_pred HHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHH
Confidence 44321 1110 1 0 012223332221211 1233455677776653 45677
Q ss_pred HHHHHHHHHHhcCCHHHHH-HHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC---------CCCC---
Q 004856 472 VNTAIFISYAKCGCIEMAG-ELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSD---------VRPD--- 537 (727)
Q Consensus 472 ~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------~~p~--- 537 (727)
+|-..+..+.+.|+.++|. .+|++.....| +...|-..+...-+.|++++|.++|++++... -.|+
T Consensus 345 lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~ 424 (679)
T 4e6h_A 345 IWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNES 424 (679)
T ss_dssp HHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchh
Confidence 7888888888899999996 99998443344 66778888999999999999999999998631 0142
Q ss_pred ---------hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC-CHHHHHHHHHhC--CCCCC
Q 004856 538 ---------LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG-HMDEARELVKDM--PFKPD 605 (727)
Q Consensus 538 ---------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~--~~~p~ 605 (727)
...|...+....+.|..+.|..+|..+.+. ...+....|...+..-.+.| +.+.|.++|+.. ....+
T Consensus 425 ~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~ 503 (679)
T 4e6h_A 425 AINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATD 503 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC
T ss_pred hhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCc
Confidence 235777788888889999999999999864 11223445554454445554 589999999987 23335
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004856 606 ARVWGPLLSACKMHSETELAELTAEKLISMEPE---NAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 606 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 670 (727)
...|...+......|+.+.|..+|++++...|+ ....+...+..-.+.|+.+.+..+.+++.+.-
T Consensus 504 ~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 504 GEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 667888888888899999999999999998773 34567788888888999999999999987654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.28 E-value=5e-10 Score=111.94 Aligned_cols=215 Identities=9% Similarity=0.081 Sum_probs=171.7
Q ss_pred HHHHHHHHHHHHhCCCchHhHHHHHHHHHH-------hcCCH-------HHHHHHHHhccC-CCC-CHHHHHHHHHHHHH
Q 004856 452 EHVKYLHGYSMKLGLNSLSSVNTAIFISYA-------KCGCI-------EMAGELFDEEKI-DSK-DIITWNSMISAYAK 515 (727)
Q Consensus 452 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~-~~~-~~~~~~~li~~~~~ 515 (727)
++|..+++.+++.. +.+...|..++..+. +.|++ ++|..+|++... ..| +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777777753 456667777776665 35886 999999999665 355 56799999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-hH-HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH-hcCCHHH
Q 004856 516 HGDWSQCFKLYTQMKQSDVRPD-LI-TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG-RAGHMDE 592 (727)
Q Consensus 516 ~g~~~~A~~~~~~m~~~g~~p~-~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~ 592 (727)
.|++++|.++|++.++ +.|+ .. .|..++..+.+.|++++|..+|++..+. .+++...|...+.... ..|+.++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998 5675 43 7999999999999999999999999853 2334555654444432 3699999
Q ss_pred HHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHcc---CCC-CcchHHHHHHHHHhcCChhHHHHHHHHH
Q 004856 593 ARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISM---EPE-NAGNYVLLSNIYAAAGKWNGVAKMRTFL 666 (727)
Q Consensus 593 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m 666 (727)
|.++|++. ...| +...|..++..+...|+.++|..+|+++++. .|+ ....+..++..+.+.|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999988 3334 5678988998899999999999999999995 443 5668888999999999999999999998
Q ss_pred HhCCC
Q 004856 667 RDRGL 671 (727)
Q Consensus 667 ~~~~~ 671 (727)
.+...
T Consensus 268 ~~~~p 272 (308)
T 2ond_A 268 FTAFR 272 (308)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 77643
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.27 E-value=7.7e-11 Score=119.31 Aligned_cols=134 Identities=13% Similarity=0.011 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----h
Q 004856 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDV-RPD----LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS----Q 574 (727)
Q Consensus 504 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~ 574 (727)
..+..+...+...|++++|.+.+++..+... .++ ..++..+...+...|++++|...+++......-.++ .
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 3566666667777777777777776654210 011 235667777777778888887777776543111111 4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-C------CCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 004856 575 EHYASMVNLLGRAGHMDEARELVKDM-P------FKP-DARVWGPLLSACKMHSETELAELTAEKLISMEP 637 (727)
Q Consensus 575 ~~~~~li~~~~~~g~~~~A~~~~~~~-~------~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 637 (727)
.++..+...|...|++++|.+.++++ . ..+ ...++..+...+...|++++|...+++++++.+
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 46677777888888888888877765 1 111 123566667778888888888888888887765
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-11 Score=124.25 Aligned_cols=244 Identities=10% Similarity=0.052 Sum_probs=117.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHh------CC
Q 004856 400 VVSWSSMIKGYVTHDQSLEALRLFSEMKLE-------GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL------GL 466 (727)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------~~ 466 (727)
..+|..+...|...|++++|+.+|+++.+. ........+..+...+...|++++|...+..+.+. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 356788888889999999999999888762 11222345555666666777777777766665543 11
Q ss_pred -CchHhHHHHHHHHHHhcCCHHHHHHHHHhccCC--------CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC----
Q 004856 467 -NSLSSVNTAIFISYAKCGCIEMAGELFDEEKID--------SK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQS---- 532 (727)
Q Consensus 467 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 532 (727)
+.....+..+...|...|++++|...|++.... .| ....|..+...|...|++++|++.++++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 222344445555555555555555555542210 01 1233444444555555555555555554432
Q ss_pred --CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc------CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 004856 533 --DVRPD-LITFLGLLTACVNAGLVEEGRIIFKEMKESY------GYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFK 603 (727)
Q Consensus 533 --g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 603 (727)
+-.|+ ..++..+..++...|++++|...++++.+.. ...+........
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~----------------------- 243 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMH----------------------- 243 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHH-----------------------
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHH-----------------------
Confidence 11121 2234444444555555555555554444310 000000000000
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004856 604 PDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRD 668 (727)
Q Consensus 604 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 668 (727)
...+..+...+...+.+.++...++++....|....++..++.+|...|++++|.+++++..+
T Consensus 244 --~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 244 --AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --HHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred --HHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 001111112233344444555566666666666666777777777777777777777776543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.26 E-value=3.3e-10 Score=103.48 Aligned_cols=162 Identities=16% Similarity=0.068 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 004856 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLL 584 (727)
Q Consensus 505 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 584 (727)
.|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 34444445555555555555555554421 123444555555555555555555555555543 122344555555555
Q ss_pred HhcCCHHHHHHHHHhC-CC-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHH
Q 004856 585 GRAGHMDEARELVKDM-PF-KPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKM 662 (727)
Q Consensus 585 ~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 662 (727)
...|++++|.+.++++ .. ..+...+..+...+...|++++|...++++++..|.++.++..++.++...|++++|.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 5556666655555554 11 223445555666667777777777777777777777777777777777777777777777
Q ss_pred HHHHHhC
Q 004856 663 RTFLRDR 669 (727)
Q Consensus 663 ~~~m~~~ 669 (727)
+++..+.
T Consensus 167 ~~~~~~~ 173 (186)
T 3as5_A 167 FKKANEL 173 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 7766543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.9e-10 Score=122.34 Aligned_cols=180 Identities=11% Similarity=0.014 Sum_probs=158.2
Q ss_pred CHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHH
Q 004856 485 CIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDW-SQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIF 561 (727)
Q Consensus 485 ~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~ 561 (727)
.++++...+++.....| +...|..+...|...|++ ++|++.|++..+. .| +...|..+..+|...|++++|...|
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35666677766554444 678899999999999999 9999999999984 46 5789999999999999999999999
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhc---------CCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHc--------CCH
Q 004856 562 KEMKESYGYEPSQEHYASMVNLLGRA---------GHMDEARELVKDM-PFKP-DARVWGPLLSACKMH--------SET 622 (727)
Q Consensus 562 ~~~~~~~~~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~--------g~~ 622 (727)
++..+ +.|+...+..+...|... |++++|++.++++ ...| +...|..+..++... |++
T Consensus 161 ~~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 99984 568888999999999999 9999999999988 4455 567888888888888 999
Q ss_pred HHHHHHHHHHHccCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 623 ELAELTAEKLISMEP---ENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 623 ~~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
++|+..++++++++| .++.++..++.+|...|++++|.+.+++..+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999 99999999999999999999999999988765
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.2e-10 Score=118.72 Aligned_cols=231 Identities=7% Similarity=-0.012 Sum_probs=167.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC--C----CchHhHHH
Q 004856 406 MIKGYVTHDQSLEALRLFSEMKLE----GVEV-DFVTIINILPACVNIGALEHVKYLHGYSMKLG--L----NSLSSVNT 474 (727)
Q Consensus 406 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~ 474 (727)
....+...|++++|+..|++.... +-.+ ...++..+...+...|+++.|...+....+.. . +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445566777788887777777653 1111 22456666677777788888777777666521 1 12245677
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCC---CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-ChHHHH
Q 004856 475 AIFISYAKCGCIEMAGELFDEEKID---SKD----IITWNSMISAYAKHGDWSQCFKLYTQMKQS----DVRP-DLITFL 542 (727)
Q Consensus 475 ~li~~~~~~g~~~~A~~~~~~~~~~---~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~ 542 (727)
.+...|...|++++|...|++.... .++ ..++..+...|...|++++|++.+++..+. +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7888889999999999988873311 122 247888999999999999999999998762 2224 366789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhc---CCCCChhHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCHh-hHHHHHHH
Q 004856 543 GLLTACVNAGLVEEGRIIFKEMKESY---GYEPSQEHYASMVNLLGRAGH---MDEARELVKDMPFKPDAR-VWGPLLSA 615 (727)
Q Consensus 543 ~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~~-~~~~ll~~ 615 (727)
.+..++...|++++|...+++..+.. +.+.....+..+...|...|+ +++|..++++.+..|+.. .+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999877531 111123346678888999999 999999999986555443 56667777
Q ss_pred HHHcCCHHHHHHHHHHHHccC
Q 004856 616 CKMHSETELAELTAEKLISME 636 (727)
Q Consensus 616 ~~~~g~~~~A~~~~~~~~~~~ 636 (727)
+...|++++|...+++++++.
T Consensus 349 y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999998754
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.1e-11 Score=122.23 Aligned_cols=242 Identities=13% Similarity=0.073 Sum_probs=166.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--------C---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC------C
Q 004856 368 QVSVHNSLIDMYCECEDLNCARKIFDSVKT--------K---TVVSWSSMIKGYVTHDQSLEALRLFSEMKLE------G 430 (727)
Q Consensus 368 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g 430 (727)
+..++..+...|...|++++|..+|+++.+ . ...++..+...|...|++++|+..|++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 456788899999999999999999988754 2 2357888999999999999999999998764 2
Q ss_pred CCC-CHHHHHHHHHHHhcCCChHHHHHHHHHHHHh------CC-CchHhHHHHHHHHHHhcCCHHHHHHHHHhccCC---
Q 004856 431 VEV-DFVTIINILPACVNIGALEHVKYLHGYSMKL------GL-NSLSSVNTAIFISYAKCGCIEMAGELFDEEKID--- 499 (727)
Q Consensus 431 ~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--- 499 (727)
-.| ....+..+...+...|++++|...+..+.+. +. +.....+..+...|...|++++|...|++....
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 223 3456788888999999999999999988875 32 334567888999999999999999999984321
Q ss_pred -----CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 004856 500 -----SK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSD-------VRPDLITFLGLLTACVNAGLVEEGRIIFKEMKE 566 (727)
Q Consensus 500 -----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 566 (727)
.| ....+..+...|...|++++|.+.++++.+.. ..|.......
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------------- 242 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM----------------------- 242 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH-----------------------
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH-----------------------
Confidence 22 34578889999999999999999999998731 1111000000
Q ss_pred hcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004856 567 SYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP-FKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPE 638 (727)
Q Consensus 567 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 638 (727)
....+..+...+...+.+.+|...+.+.. ..| +..+|..+...+...|++++|...+++++++.|+
T Consensus 243 ------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 243 ------HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ------HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred ------HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 01112222333344555555555555552 233 3346677777788888888888888888877663
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1.4e-09 Score=99.23 Aligned_cols=170 Identities=16% Similarity=0.062 Sum_probs=144.4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 004856 470 SSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC 548 (727)
Q Consensus 470 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 548 (727)
...+..+...+...|++++|...|++.....| +...|..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34566677888999999999999999765544 67888999999999999999999999998853 33678888999999
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHH
Q 004856 549 VNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAE 626 (727)
Q Consensus 549 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~ 626 (727)
...|++++|...++.+.+. .+.+...+..+...+.+.|++++|.+.++++ ...| +...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999875 3456778899999999999999999999987 3334 5678888888899999999999
Q ss_pred HHHHHHHccCCCCcch
Q 004856 627 LTAEKLISMEPENAGN 642 (727)
Q Consensus 627 ~~~~~~~~~~p~~~~~ 642 (727)
..++++++..|++...
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999988876543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.20 E-value=7.3e-09 Score=106.70 Aligned_cols=261 Identities=13% Similarity=0.017 Sum_probs=156.5
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhcCCChHHHHHHHHHHHHh----CCC-chHhHHHHHHHH
Q 004856 409 GYVTHDQSLEALRLFSEMKLEGVEVDFV----TIINILPACVNIGALEHVKYLHGYSMKL----GLN-SLSSVNTAIFIS 479 (727)
Q Consensus 409 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~ 479 (727)
.+...|++++|...+++........+.. .+..+...+...|++++|...+....+. +.. .....+..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3344555555555555554432111111 2233334445555555555555544431 111 012234455666
Q ss_pred HHhcCCHHHHHHHHHhccCC-----C---C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--C--ChHHHHHHHH
Q 004856 480 YAKCGCIEMAGELFDEEKID-----S---K-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVR--P--DLITFLGLLT 546 (727)
Q Consensus 480 ~~~~g~~~~A~~~~~~~~~~-----~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ll~ 546 (727)
+...|++++|...+++.... . | ....+..+...+...|++++|...+++..+..-. + ...++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 77777777777777752210 1 2 1345566777888888888888888887753211 1 1346777788
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCChhHHH-----HHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HhhHHHHHHH
Q 004856 547 ACVNAGLVEEGRIIFKEMKESYGYEPSQEHYA-----SMVNLLGRAGHMDEARELVKDM-PFKPD-----ARVWGPLLSA 615 (727)
Q Consensus 547 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~ll~~ 615 (727)
.+...|++++|...+++......-......+. ..+..+...|++++|..++++. ...|. ...+..+...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 88888999999988888765411111111121 2334477889999999988887 22221 1245556666
Q ss_pred HHHcCCHHHHHHHHHHHHccCCC-----C-cchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 616 CKMHSETELAELTAEKLISMEPE-----N-AGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 616 ~~~~g~~~~A~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
+...|+.++|...++++++..+. + ..++..++.++...|+.++|...+++....
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 88889999999998888765332 1 136667788888999999999888876543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.19 E-value=7.2e-10 Score=105.35 Aligned_cols=206 Identities=13% Similarity=0.065 Sum_probs=147.8
Q ss_pred CCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHH
Q 004856 433 VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMIS 511 (727)
Q Consensus 433 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~ 511 (727)
.|+..+......+...|++++|...+....+...+++...+..+...|.+.|++++|...|++.....| +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 355677777788888899999999988888877535666666688888888888888888888554455 4567888888
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC-h-------HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC---hhHHHHH
Q 004856 512 AYAKHGDWSQCFKLYTQMKQSDVRPD-L-------ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS---QEHYASM 580 (727)
Q Consensus 512 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 580 (727)
.|...|++++|++.+++..+. .|+ . ..|..+...+...|++++|+..|+++.+ +.|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 888888888888888888874 453 4 4577777788888888888888888874 4565 4567777
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CC-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHH
Q 004856 581 VNLLGRAGHMDEARELVKDM-PF-KPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIY 650 (727)
Q Consensus 581 i~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 650 (727)
...|...|+. .++++ .. ..+...+.... ....+.+++|...++++++++|+++.+...+..+.
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 7777655543 22222 11 11233333322 34456689999999999999999888777776553
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.1e-09 Score=104.02 Aligned_cols=189 Identities=11% Similarity=-0.019 Sum_probs=105.3
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHHhccCC-C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHH
Q 004856 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKID-S-KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD-LITFLGLL 545 (727)
Q Consensus 469 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll 545 (727)
++..+......|.+.|++++|...|++.... + ++...|..+..++...|++++|++.|++..+ ..|+ ...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 3445555556666666666666666653222 2 4555555566666666666666666666665 3343 44566666
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCCC-h-------hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--H-hhHHHHH
Q 004856 546 TACVNAGLVEEGRIIFKEMKESYGYEPS-Q-------EHYASMVNLLGRAGHMDEARELVKDM-PFKPD--A-RVWGPLL 613 (727)
Q Consensus 546 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~-------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~--~-~~~~~ll 613 (727)
.++...|++++|...+++..+. .|+ . ..|..+...+.+.|++++|++.++++ ...|+ . ..|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 6666666666666666666643 222 2 33555555666666666666666655 44454 2 2344443
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 614 SACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 614 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
..+. ..+...++++..+.+.+...|... .....+.+++|...+++..+.
T Consensus 161 ~~~~-----~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 161 VLFY-----NNGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHH-----HHHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 3342 233344555555554443333322 233345568999999888765
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.18 E-value=7.1e-10 Score=114.55 Aligned_cols=223 Identities=8% Similarity=-0.039 Sum_probs=137.1
Q ss_pred HhcCCChHHHHHHHHHHHHhC--C---CchHhHHHHHHHHHHhcCCHHHHHHHHHhccCC---CC-----CHHHHHHHHH
Q 004856 445 CVNIGALEHVKYLHGYSMKLG--L---NSLSSVNTAIFISYAKCGCIEMAGELFDEEKID---SK-----DIITWNSMIS 511 (727)
Q Consensus 445 ~~~~~~~~~a~~~~~~~~~~~--~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~-----~~~~~~~li~ 511 (727)
+...|++++|...+..+.+.. . +....++..+...|...|+++.|...+++.... .+ ...+++.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 445566666666655555421 0 112345556666677777777776666652110 11 1346677777
Q ss_pred HHHHcCChHHHHHHHHHHHHC----CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc---CCCCChhHHHHHHHH
Q 004856 512 AYAKHGDWSQCFKLYTQMKQS----DVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESY---GYEPSQEHYASMVNL 583 (727)
Q Consensus 512 ~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~li~~ 583 (727)
.|...|++++|++.|++..+. +-.+ ...++..+..+|...|++++|...+++..+.. +.+....++..+...
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT 270 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence 888888888888888776652 1111 13457777788888888888888888776511 112225567778888
Q ss_pred HHhcCCHHHHHHHHHhC----CC--CCCHh-hHHHHHHHHHHcCC---HHHHHHHHHHHHccCCCCcchHHHHHHHHHhc
Q 004856 584 LGRAGHMDEARELVKDM----PF--KPDAR-VWGPLLSACKMHSE---TELAELTAEKLISMEPENAGNYVLLSNIYAAA 653 (727)
Q Consensus 584 ~~~~g~~~~A~~~~~~~----~~--~p~~~-~~~~ll~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 653 (727)
|.+.|++++|.+.+++. .. .|... .+..+...+...++ .++|...+++. ...|.....+..++.+|...
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~ 349 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESS 349 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHC
Confidence 88888888888888776 11 22222 33333334666666 66666666652 12233345667888888888
Q ss_pred CChhHHHHHHHHHHh
Q 004856 654 GKWNGVAKMRTFLRD 668 (727)
Q Consensus 654 g~~~~a~~~~~~m~~ 668 (727)
|++++|.+.+++..+
T Consensus 350 g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 350 CHFEQAAAFYRKVLK 364 (378)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888888887654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.6e-08 Score=101.68 Aligned_cols=229 Identities=10% Similarity=0.024 Sum_probs=165.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-----CC-chHhHHH
Q 004856 406 MIKGYVTHDQSLEALRLFSEMKLEGV-EVD----FVTIINILPACVNIGALEHVKYLHGYSMKLG-----LN-SLSSVNT 474 (727)
Q Consensus 406 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~-----~~-~~~~~~~ 474 (727)
....+...|++++|+..|++....-. .++ ..++..+...+...|+++.|...+....+.. .. ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34456677888888888887765311 122 2455666777788888888888777766521 11 1345677
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCC---CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCChHHHH
Q 004856 475 AIFISYAKCGCIEMAGELFDEEKID---SKD----IITWNSMISAYAKHGDWSQCFKLYTQMKQ-----SDVRPDLITFL 542 (727)
Q Consensus 475 ~li~~~~~~g~~~~A~~~~~~~~~~---~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~ 542 (727)
.+...|...|++++|.+.|++.... .++ ..+++.+...|...|++++|++.+++..+ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 7888888999999998888873211 122 34778888999999999999999999876 32 22366788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhcCCC--CC-hhHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCHh-hHHHHHHH
Q 004856 543 GLLTACVNAGLVEEGRIIFKEMKESYGYE--PS-QEHYASMVNLLGRAGH---MDEARELVKDMPFKPDAR-VWGPLLSA 615 (727)
Q Consensus 543 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--p~-~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~~-~~~~ll~~ 615 (727)
.+..++.+.|++++|...+++..+...-. |. ...+..+...|...|+ +.+|...+++.+..|+.. .+..+...
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 89999999999999999999988752221 22 3456677777888888 999999999976555443 55566667
Q ss_pred HHHcCCHHHHHHHHHHHHcc
Q 004856 616 CKMHSETELAELTAEKLISM 635 (727)
Q Consensus 616 ~~~~g~~~~A~~~~~~~~~~ 635 (727)
+...|++++|...++++++.
T Consensus 346 y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999998764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.4e-09 Score=120.45 Aligned_cols=164 Identities=17% Similarity=0.245 Sum_probs=147.9
Q ss_pred CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hhH
Q 004856 500 SK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD-LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS-QEH 576 (727)
Q Consensus 500 ~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~ 576 (727)
.| +...|+.+...|.+.|++++|++.|++.++ +.|+ ..+|..+..++.+.|++++|+..|++..+. .|+ ...
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a 79 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADA 79 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHH
Confidence 45 467899999999999999999999999998 5674 788999999999999999999999999864 555 779
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcC
Q 004856 577 YASMVNLLGRAGHMDEARELVKDM-PFKPD-ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAG 654 (727)
Q Consensus 577 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 654 (727)
|..+..+|.+.|++++|++.+++. .+.|+ ...|..+...+...|++++|+..++++++++|+++.++..++.+|...|
T Consensus 80 ~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g 159 (723)
T 4gyw_A 80 YSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVC 159 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcc
Confidence 999999999999999999999988 55664 5688888889999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHh
Q 004856 655 KWNGVAKMRTFLRD 668 (727)
Q Consensus 655 ~~~~a~~~~~~m~~ 668 (727)
+|++|.+.+++..+
T Consensus 160 ~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 160 DWTDYDERMKKLVS 173 (723)
T ss_dssp CCTTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999988754
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=4.6e-09 Score=103.92 Aligned_cols=215 Identities=10% Similarity=-0.006 Sum_probs=121.2
Q ss_pred CHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhcCCChHHHHHHH
Q 004856 384 DLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLE----GVEVD-FVTIINILPACVNIGALEHVKYLH 458 (727)
Q Consensus 384 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~ 458 (727)
++++|...|+.. ...|...|++++|+..|.+.... |-.++ ..+|..+..++...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 477777776653 66677778888888877766542 11111 233444444444444444444444
Q ss_pred HHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC
Q 004856 459 GYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH-GDWSQCFKLYTQMKQSDVRPD 537 (727)
Q Consensus 459 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~ 537 (727)
+...+. +...|+... -..+|+.+...|... |++++|+..|++..+. .|+
T Consensus 101 ~~Al~l---------------~~~~g~~~~-------------~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~ 150 (292)
T 1qqe_A 101 ENAIQI---------------FTHRGQFRR-------------GANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQ 150 (292)
T ss_dssp HHHHHH---------------HHHTTCHHH-------------HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHH
T ss_pred HHHHHH---------------HHHcCCHHH-------------HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHh
Confidence 433321 011111111 123566677777775 8888888877777652 221
Q ss_pred -------hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCh-----hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 004856 538 -------LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQ-----EHYASMVNLLGRAGHMDEARELVKDM-PFKP 604 (727)
Q Consensus 538 -------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p 604 (727)
..++..+...+...|++++|+..|++..+...-.+.. ..|..+..++...|++++|...+++. .+.|
T Consensus 151 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 230 (292)
T 1qqe_A 151 DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230 (292)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred CCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 2456777777888888888888888777541111111 14566677777788888888888776 4444
Q ss_pred CHh------hHHHHHHHHH--HcCCHHHHHHHHHHHHccCCCC
Q 004856 605 DAR------VWGPLLSACK--MHSETELAELTAEKLISMEPEN 639 (727)
Q Consensus 605 ~~~------~~~~ll~~~~--~~g~~~~A~~~~~~~~~~~p~~ 639 (727)
+.. .+..++.++. ..+++++|+..|+++..++|..
T Consensus 231 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 231 NFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp -------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 322 2233344443 3456777777777777777644
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.2e-09 Score=107.33 Aligned_cols=165 Identities=16% Similarity=0.228 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc-----CCC
Q 004856 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQS------DVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESY-----GYE 571 (727)
Q Consensus 504 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~ 571 (727)
.+|..+...|...|++++|++.+++..+. .-.| ...++..+...+...|++++|..+++++.+.. +..
T Consensus 86 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 165 (283)
T 3edt_B 86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD 165 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34555555666666666666666555542 0012 23455556666666666666666666555320 001
Q ss_pred C-ChhHHHHHHHHHHhcCCHHHHHHHHHhC----------CCCCCHh-hHHHHHHHHHHcCC------HHHHHHHHHHHH
Q 004856 572 P-SQEHYASMVNLLGRAGHMDEARELVKDM----------PFKPDAR-VWGPLLSACKMHSE------TELAELTAEKLI 633 (727)
Q Consensus 572 p-~~~~~~~li~~~~~~g~~~~A~~~~~~~----------~~~p~~~-~~~~ll~~~~~~g~------~~~A~~~~~~~~ 633 (727)
| ...++..+...|.+.|++++|.++++++ ...+... .|..+.......+. +..+...++...
T Consensus 166 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (283)
T 3edt_B 166 PNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK 245 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC
Confidence 2 1345556666666666666666666554 0122222 22222222222221 222333333222
Q ss_pred ccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004856 634 SMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRD 668 (727)
Q Consensus 634 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 668 (727)
...|....++..++.+|...|++++|..++++..+
T Consensus 246 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 246 VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23344456677788888888888888888877654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.04 E-value=5.7e-08 Score=93.99 Aligned_cols=176 Identities=12% Similarity=0.009 Sum_probs=109.8
Q ss_pred HHHHHHhccCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 004856 489 AGELFDEEKID-SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKE 566 (727)
Q Consensus 489 A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 566 (727)
|...|++.... .++...+..+..++...|++++|++++.+.+..+-.+ +...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44555553322 3445555566667777777777777777766544212 345566677777777777777777777764
Q ss_pred hcCCCC-----ChhHHHHHHHH--HHhcC--CHHHHHHHHHhC-CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHcc-
Q 004856 567 SYGYEP-----SQEHYASMVNL--LGRAG--HMDEARELVKDM-PFKPDARVWGPLLSACKMHSETELAELTAEKLISM- 635 (727)
Q Consensus 567 ~~~~~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~- 635 (727)
. .| +..+...|+.+ ....| +..+|..+|+++ ...|+..+-..++.++.+.|++++|+..++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3 45 23444444444 22233 777777777777 23344233334444677778888888887776665
Q ss_pred ---------CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 636 ---------EPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 636 ---------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
+|+++.++..++.+....|+ +|.++++++.+.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 47777777777767667776 777777777666
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.7e-07 Score=96.33 Aligned_cols=162 Identities=10% Similarity=0.078 Sum_probs=80.2
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCC----chHhHHHHHHHHHHhcCCHHHHHHHHHhccCC--CC-CHHHHH----
Q 004856 439 INILPACVNIGALEHVKYLHGYSMKLGLN----SLSSVNTAIFISYAKCGCIEMAGELFDEEKID--SK-DIITWN---- 507 (727)
Q Consensus 439 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~-~~~~~~---- 507 (727)
..+...+...|++++|...+....+.... .....+..+...+...|++++|...+++.... .+ +...|.
T Consensus 139 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~ 218 (373)
T 1hz4_A 139 RIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN 218 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHH
Confidence 33444445555555555555544432211 11234445555566666666666666552110 11 111121
Q ss_pred -HHHHHHHHcCChHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHhHHh---cCCCCCh-hHHHH
Q 004856 508 -SMISAYAKHGDWSQCFKLYTQMKQSDVRPD---LITFLGLLTACVNAGLVEEGRIIFKEMKES---YGYEPSQ-EHYAS 579 (727)
Q Consensus 508 -~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~p~~-~~~~~ 579 (727)
..+..+...|++++|...+++.......++ ...+..+..++...|++++|...++..... .+..++. ..+..
T Consensus 219 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 298 (373)
T 1hz4_A 219 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL 298 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 122335566666666666666654321111 123455566666667777776666655432 1222222 25555
Q ss_pred HHHHHHhcCCHHHHHHHHHhC
Q 004856 580 MVNLLGRAGHMDEARELVKDM 600 (727)
Q Consensus 580 li~~~~~~g~~~~A~~~~~~~ 600 (727)
+...+...|+.++|...+++.
T Consensus 299 la~~~~~~g~~~~A~~~l~~a 319 (373)
T 1hz4_A 299 LNQLYWQAGRKSDAQRVLLDA 319 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHH
Confidence 666666777777777766655
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.1e-08 Score=97.44 Aligned_cols=202 Identities=10% Similarity=-0.005 Sum_probs=116.6
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----hHHH
Q 004856 470 SSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD----IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD----LITF 541 (727)
Q Consensus 470 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~ 541 (727)
...+-.+...+.+.|++++|...|+++....|+ ...+..+..+|.+.|++++|+..|++..+. .|+ ...+
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~ 92 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPRVPQAE 92 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCchhHHHH
Confidence 334444444555555555555555554333332 344555555555555555555555555552 221 2334
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHH
Q 004856 542 LGLLTACVN--------AGLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPL 612 (727)
Q Consensus 542 ~~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 612 (727)
..+..++.. .|++++|...|+++.+. .|+ ......+.......+.+. ..+..+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~~---------------~~~~~l 154 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKLA---------------RKQYEA 154 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHHH---------------HHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHHH---------------HHHHHH
Confidence 444555555 55555555555555543 122 111111111100000000 113455
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCc---chHHHHHHHHHhc----------CChhHHHHHHHHHHhCCCccCCceeE
Q 004856 613 LSACKMHSETELAELTAEKLISMEPENA---GNYVLLSNIYAAA----------GKWNGVAKMRTFLRDRGLKKTPGCSW 679 (727)
Q Consensus 613 l~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~~~ 679 (727)
...+...|++++|+..++++++..|+++ .++..++.+|... |++++|...++++.+..
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~--------- 225 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF--------- 225 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC---------
Confidence 6668999999999999999999999754 5788999999877 89999999999887652
Q ss_pred EEECCEEEEEEeCCCCCcChHHHHHHHHHH-HHHHH
Q 004856 680 IEIGKLVHEFWAADQSHPQADAIYTILGIL-ELEIM 714 (727)
Q Consensus 680 ~~~~~~~~~f~~~d~~hp~~~~i~~~l~~l-~~~~~ 714 (727)
+.+|........+..+ .++..
T Consensus 226 --------------p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 226 --------------PDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp --------------TTCTHHHHHHHHHHHHHHHHHH
T ss_pred --------------CCChHHHHHHHHHHHHHHHHHH
Confidence 2366667777777777 44443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.3e-08 Score=98.77 Aligned_cols=205 Identities=11% Similarity=0.028 Sum_probs=141.8
Q ss_pred CCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCc--hHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC---C-HHHH
Q 004856 433 VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS--LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK---D-IITW 506 (727)
Q Consensus 433 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~-~~~~ 506 (727)
.+...+......+...|++++|...+..+.+..... ....+..+..+|.+.|++++|...|++.....| . ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 345667777788899999999999999998865221 266778888999999999999999999654334 2 3567
Q ss_pred HHHHHHHHH--------cCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHH
Q 004856 507 NSMISAYAK--------HGDWSQCFKLYTQMKQSDVRPDL-ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHY 577 (727)
Q Consensus 507 ~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 577 (727)
..+..++.. .|++++|+..|++.++. .|+. .....+. .+..+... -...+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~--------------~~~~~~~~-----~~~~~ 151 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQ--------------KIRELRAK-----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHH--------------HHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHH--------------HHHHHHHH-----HHHHH
Confidence 778888888 99999999999999984 4643 2222211 11111110 01124
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HhhHHHHHHHHHHc----------CCHHHHHHHHHHHHccCCCCcc-
Q 004856 578 ASMVNLLGRAGHMDEARELVKDM-PFKPD----ARVWGPLLSACKMH----------SETELAELTAEKLISMEPENAG- 641 (727)
Q Consensus 578 ~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~- 641 (727)
..+...|.+.|++++|+..++++ ...|+ ...+..+..++... |++++|+..++++++..|+++.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 55677778888888888888776 22333 23455555556544 8899999999999999998764
Q ss_pred --hHHHHHHHHHhcCChhH
Q 004856 642 --NYVLLSNIYAAAGKWNG 658 (727)
Q Consensus 642 --~~~~l~~~~~~~g~~~~ 658 (727)
+...+..++...|++++
T Consensus 232 ~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 34455555555555543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.7e-08 Score=110.36 Aligned_cols=217 Identities=11% Similarity=0.057 Sum_probs=146.8
Q ss_pred cCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHH
Q 004856 483 CGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRII 560 (727)
Q Consensus 483 ~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~ 560 (727)
.|++++|...|++.....| +...|..+...|...|++++|++.|++..+. .| +...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3678888888888654445 5788999999999999999999999999984 45 577899999999999999999999
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHc---CCHHHHHHHHHHHHcc
Q 004856 561 FKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMH---SETELAELTAEKLISM 635 (727)
Q Consensus 561 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~~~~A~~~~~~~~~~ 635 (727)
+++..+. .+.+...+..+...|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|...++++++.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999875 2334678899999999999999999999987 4445 456788888889999 9999999999999999
Q ss_pred CCCCcchHHHHHHHHHhcCChhH----HHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCC-CCCcChHHHHHHHHH
Q 004856 636 EPENAGNYVLLSNIYAAAGKWNG----VAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAAD-QSHPQADAIYTILGI 708 (727)
Q Consensus 636 ~p~~~~~~~~l~~~~~~~g~~~~----a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~f~~~d-~~hp~~~~i~~~l~~ 708 (727)
+|.+...+..++ ..+.+. +..++.........+.+...-..-+....++++.+ ..|+....+...+..
T Consensus 158 ~p~~~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rI~~~~~~~~~~g~~~~~~~l~~~ 230 (568)
T 2vsy_A 158 GVGAVEPFAFLS-----EDASAAEQLACARTRAQAIAASVRPLAPTRVRSKGPLRVGFVSNGFGAHPTGLLTVALFEA 230 (568)
T ss_dssp TCCCSCHHHHTT-----SCCCHHHHHHHHHHHHHHHHTTCCCCCCCCCCSSSCEEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCcccChHHHhC-----CCCHHHHHHHHHHHHHhccCcccCCCCCCCCCCCCCeEEEEECcccccChHHHHHHHHHhh
Confidence 999888887766 333322 22222222222221111100001223467888877 667766666666666
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=1e-08 Score=101.49 Aligned_cols=201 Identities=13% Similarity=0.016 Sum_probs=143.4
Q ss_pred ChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCC-----CC--CHHHHHHHHHHHHHcCChHHH
Q 004856 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID-----SK--DIITWNSMISAYAKHGDWSQC 522 (727)
Q Consensus 450 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~--~~~~~~~li~~~~~~g~~~~A 522 (727)
++++|...+... ...|...|++++|...|++.... .| ...+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 367776666554 34577889999999888863211 12 146888999999999999999
Q ss_pred HHHHHHHHHCCC---CCC--hHHHHHHHHHHHhc-CCHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHH
Q 004856 523 FKLYTQMKQSDV---RPD--LITFLGLLTACVNA-GLVEEGRIIFKEMKESYGYEPS----QEHYASMVNLLGRAGHMDE 592 (727)
Q Consensus 523 ~~~~~~m~~~g~---~p~--~~t~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~ 592 (727)
+..|++..+... .+. ..++..+..+|... |++++|+..|++..+.+.-..+ ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 999998876210 111 35788899999996 9999999999998764211111 3568889999999999999
Q ss_pred HHHHHHhC-CCCCCHh--------hHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcch-----HHHHHHHHH--hcCCh
Q 004856 593 ARELVKDM-PFKPDAR--------VWGPLLSACKMHSETELAELTAEKLISMEPENAGN-----YVLLSNIYA--AAGKW 656 (727)
Q Consensus 593 A~~~~~~~-~~~p~~~--------~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 656 (727)
|+..+++. ...|+.. .|..+...+...|++++|+..++++++++|..... +..++..|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999987 3333221 45666677889999999999999999999975543 344556664 45678
Q ss_pred hHHHHHHHH
Q 004856 657 NGVAKMRTF 665 (727)
Q Consensus 657 ~~a~~~~~~ 665 (727)
++|+..++.
T Consensus 257 ~~A~~~~~~ 265 (292)
T 1qqe_A 257 SEHCKEFDN 265 (292)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhcc
Confidence 888877754
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.96 E-value=5e-08 Score=92.22 Aligned_cols=182 Identities=10% Similarity=-0.000 Sum_probs=117.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh----HHHH
Q 004856 471 SVNTAIFISYAKCGCIEMAGELFDEEKIDSKD----IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL----ITFL 542 (727)
Q Consensus 471 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~ 542 (727)
..+..+...+.+.|++++|...|+++....|+ ...+..+..+|.+.|++++|+..|++..+. .|+. ..+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 34444556677788888888888875433343 246667777888888888888888887763 3432 1344
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 004856 543 GLLTACVN------------------AGLVEEGRIIFKEMKESYGYEPSQ-EHYASMVNLLGRAGHMDEARELVKDMPFK 603 (727)
Q Consensus 543 ~ll~~~~~------------------~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 603 (727)
.+..++.. .|++++|...|+.+.+. .|+. ..+..+.... ......
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~----~~~~~~--------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLV----FLKDRL--------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHH----HHHHHH---------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHH----HHHHHH---------
Confidence 44444443 34566666666666543 2331 1221111100 000000
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCc---chHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 004856 604 PDARVWGPLLSACKMHSETELAELTAEKLISMEPENA---GNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLK 672 (727)
Q Consensus 604 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 672 (727)
......+...+...|++++|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 00112344558899999999999999999999875 57889999999999999999999999887654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.95 E-value=2e-08 Score=98.47 Aligned_cols=166 Identities=12% Similarity=0.054 Sum_probs=101.5
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhccCC--------CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC------CC
Q 004856 470 SSVNTAIFISYAKCGCIEMAGELFDEEKID--------SK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQS------DV 534 (727)
Q Consensus 470 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 534 (727)
..++..+...|...|++++|...|++.... .| ....|..+...|...|++++|+..+++..+. +-
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 164 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD 164 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 345555566666666666666666652211 12 3456777888888888888888888888763 11
Q ss_pred CC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc------CCCCC-hhHHHHHHHHHHhcC------CHHHHHHHHHhC
Q 004856 535 RP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESY------GYEPS-QEHYASMVNLLGRAG------HMDEARELVKDM 600 (727)
Q Consensus 535 ~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~p~-~~~~~~li~~~~~~g------~~~~A~~~~~~~ 600 (727)
.| ...++..+..++...|++++|..+++++.+.. ...+. ...+..+...+...+ .+.++...++..
T Consensus 165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC 244 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence 33 24578888888999999999999998877531 11222 223444444333322 345555555555
Q ss_pred C-CCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004856 601 P-FKPD-ARVWGPLLSACKMHSETELAELTAEKLISM 635 (727)
Q Consensus 601 ~-~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 635 (727)
. ..|+ ..++..+...+...|++++|...++++++.
T Consensus 245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3 2233 346777777899999999999999998875
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.1e-09 Score=96.07 Aligned_cols=139 Identities=10% Similarity=0.017 Sum_probs=98.1
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCC
Q 004856 512 AYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP-SQEHYASMVNLLGRAGH 589 (727)
Q Consensus 512 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~ 589 (727)
.+...|++++|++.+.+... ..| +...+..+...|...|++++|++.|++..+. .| +...|..+..+|.+.|+
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCc
Confidence 34455667777777776654 234 2445566777777777777777777777754 33 35677777777777777
Q ss_pred HHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHH-HHHHHHccCCCCcchHHHHHHHHHhcCC
Q 004856 590 MDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAEL-TAEKLISMEPENAGNYVLLSNIYAAAGK 655 (727)
Q Consensus 590 ~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 655 (727)
+++|+..|++. .+.| +...|..+...+...|+.++|.. .++++++++|+++.+|.....++...|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 77777777766 4455 35567777777888888776555 4689999999999999988888888875
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.93 E-value=1e-07 Score=92.24 Aligned_cols=243 Identities=10% Similarity=-0.021 Sum_probs=161.5
Q ss_pred HHhcCCHHHHHHHHhcCCCCChh-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHH
Q 004856 379 YCECEDLNCARKIFDSVKTKTVV-SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYL 457 (727)
Q Consensus 379 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 457 (727)
..-.|.+..+..-...+...+.. .---+.++|...|+++.. ..-.|....+..+. .|...+ +...
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la-~~~~~~----a~~~ 88 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYV-QFLDTK----NIEE 88 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHH-HHHTTT----CCHH
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHH-HHhccc----HHHH
Confidence 34568888877766655433322 222344677777776632 11233433333333 333322 4555
Q ss_pred HHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 004856 458 HGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK---DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDV 534 (727)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 534 (727)
++.....+ .++......+..+|...|++++|++++.+.....| +...+-.++..+.+.|+.+.|.+.+++|.+ .
T Consensus 89 l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~ 165 (310)
T 3mv2_B 89 LENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--A 165 (310)
T ss_dssp HHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--c
Confidence 55555544 34444445778889999999999999998633232 556777888999999999999999999988 4
Q ss_pred CC-----ChHHHHHHHHH--HHhcC--CHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC--
Q 004856 535 RP-----DLITFLGLLTA--CVNAG--LVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PF-- 602 (727)
Q Consensus 535 ~p-----~~~t~~~ll~~--~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-- 602 (727)
.| +..+...|..+ ....| ++.+|..+|+++.+. .|+......+..++.+.|++++|++.++.+ ..
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 67 35666667666 33334 899999999999754 455333344445888999999999999865 21
Q ss_pred --------CC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchH
Q 004856 603 --------KP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNY 643 (727)
Q Consensus 603 --------~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 643 (727)
.| +..+.-.++......|+ +|.++++++.+..|+++...
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 25 44455455556566676 89999999999999887554
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.91 E-value=6e-08 Score=82.72 Aligned_cols=130 Identities=22% Similarity=0.324 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 004856 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLL 584 (727)
Q Consensus 505 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 584 (727)
.|..+...+...|++++|+.+++++.+.. +.+...+..+...+...|++++|..+++++... .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 34455555556666666666666655532 223445555555555666666666666655543 122233444444444
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 004856 585 GRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEP 637 (727)
Q Consensus 585 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 637 (727)
.+.|++++|.++++++ ...| +...+..+...+...|++++|...++++++.+|
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 4444444444444433 1111 223333333334444444444444444444333
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.90 E-value=4.5e-08 Score=83.53 Aligned_cols=128 Identities=20% Similarity=0.246 Sum_probs=112.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHH
Q 004856 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACK 617 (727)
Q Consensus 540 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 617 (727)
.+..+...+...|++++|..+++.+.+. .+.+...+..++..+...|++++|.++++++ ...| +...|..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 5677888999999999999999999875 2345778888999999999999999999987 3333 5667888888899
Q ss_pred HcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 618 MHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 618 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
..|++++|...++++++..|.+...+..++.++...|++++|...++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999999999988664
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.87 E-value=6.9e-09 Score=115.51 Aligned_cols=191 Identities=11% Similarity=0.009 Sum_probs=114.9
Q ss_pred hcCCChHHHHHHHHHHH--------HhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHc
Q 004856 446 VNIGALEHVKYLHGYSM--------KLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKH 516 (727)
Q Consensus 446 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~ 516 (727)
...|++++|...++.+. +.. +.+...+..+...|.+.|++++|...|++.....| +...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 56777777777777766 221 33445666666677777777777777776443333 556677777777777
Q ss_pred CChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 004856 517 GDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARE 595 (727)
Q Consensus 517 g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 595 (727)
|++++|++.|++..+. .| +...+..+..++...|++++ +..|+++.+. -+.+...|..+..+|.+.|++++|.+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777663 34 45566677777777777777 7777776653 12235566677777777777777777
Q ss_pred HHHhC-CCCCCH-hhHHHHHHHHHHcCC-----HHHHHHHHHHHHccCCCCcch
Q 004856 596 LVKDM-PFKPDA-RVWGPLLSACKMHSE-----TELAELTAEKLISMEPENAGN 642 (727)
Q Consensus 596 ~~~~~-~~~p~~-~~~~~ll~~~~~~g~-----~~~A~~~~~~~~~~~p~~~~~ 642 (727)
.++++ ...|+. ..|..+..++...++ .+...+..+....+.+.++..
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 77776 455543 345445444444333 233344444444455544443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=5.9e-09 Score=91.39 Aligned_cols=123 Identities=12% Similarity=0.024 Sum_probs=101.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcC
Q 004856 544 LLTACVNAGLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHS 620 (727)
Q Consensus 544 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 620 (727)
|...+...|++++|+..++... ...|+ ...+..+...|.+.|++++|++.|++. ...| +..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 4455567788999999988776 33454 446678899999999999999999988 5566 5668888888899999
Q ss_pred CHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHH-HHHHHhC
Q 004856 621 ETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKM-RTFLRDR 669 (727)
Q Consensus 621 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~~ 669 (727)
++++|+..++++++++|+++.++..++.+|.+.|++++|.+. +++..+.
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999887765 4666554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=6.7e-08 Score=95.15 Aligned_cols=172 Identities=11% Similarity=-0.009 Sum_probs=134.4
Q ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 004856 489 AGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKES 567 (727)
Q Consensus 489 A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 567 (727)
....+.... +.+...+..+...+...|++++|+..|++..+. .| +...+..+..++...|++++|...++.+...
T Consensus 105 l~~~l~~~l--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 105 IRALLDXVL--PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHS--CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHc--CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 334444433 334556677788888999999999999999884 56 5678888999999999999999999988743
Q ss_pred cCCCCChhHHHH-HHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC--cch
Q 004856 568 YGYEPSQEHYAS-MVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPEN--AGN 642 (727)
Q Consensus 568 ~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~ 642 (727)
.|+...... ....+.+.|+.++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|++ ..+
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 565443322 233466777788888888776 4455 55678888888999999999999999999999987 788
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 004856 643 YVLLSNIYAAAGKWNGVAKMRTFLR 667 (727)
Q Consensus 643 ~~~l~~~~~~~g~~~~a~~~~~~m~ 667 (727)
+..++.++...|+.++|...+++..
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 9999999999999999998887653
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.84 E-value=8.3e-08 Score=89.40 Aligned_cols=124 Identities=14% Similarity=0.137 Sum_probs=97.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHh
Q 004856 509 MISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP-SQEHYASMVNLLGR 586 (727)
Q Consensus 509 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~ 586 (727)
+..+|.+.|++++|+..|++.++. .| +...+..+..++...|++++|...|+++.+. .| +...+..+...|..
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHH
Confidence 888999999999999999999984 56 5778999999999999999999999999865 45 46788888888876
Q ss_pred cCC--HHHHHHHHHhCCCCCCH--hhHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004856 587 AGH--MDEARELVKDMPFKPDA--RVWGPLLSACKMHSETELAELTAEKLISMEPE 638 (727)
Q Consensus 587 ~g~--~~~A~~~~~~~~~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 638 (727)
.|+ .+.+...+.+.. .|+. ..+..+..++...|++++|+..+++++++.|+
T Consensus 135 ~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 654 445666666653 3443 34444455577789999999999999999995
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.82 E-value=2.9e-08 Score=89.77 Aligned_cols=156 Identities=10% Similarity=0.042 Sum_probs=100.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHH-H
Q 004856 507 NSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNL-L 584 (727)
Q Consensus 507 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~ 584 (727)
..+...+.+.|++++|+..|++..+. .| +...+..+..++...|++++|...++.+... .|+...+..+... +
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHH
Confidence 34445556666666666666666552 34 3455666666666666666666666665533 2333222221111 1
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC--cchHHHHHHHHHhcCChhHHH
Q 004856 585 GRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPEN--AGNYVLLSNIYAAAGKWNGVA 660 (727)
Q Consensus 585 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~ 660 (727)
...+...+|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|+. ..++..++.++...|+.++|.
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 1212223355566555 3455 45677777778899999999999999999998864 558889999999999999999
Q ss_pred HHHHHHH
Q 004856 661 KMRTFLR 667 (727)
Q Consensus 661 ~~~~~m~ 667 (727)
..+++..
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.79 E-value=3.4e-07 Score=85.44 Aligned_cols=173 Identities=11% Similarity=0.031 Sum_probs=136.3
Q ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC----CHHHHHHHHHHh
Q 004856 489 AGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAG----LVEEGRIIFKEM 564 (727)
Q Consensus 489 A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g----~~~~a~~~~~~~ 564 (727)
|...|++... .-+...+..+...|...+++++|++.|++..+.| +...+..|...|.. + ++++|..+|++.
T Consensus 5 A~~~~~~aa~-~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 5 PGSQYQQQAE-AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp TTHHHHHHHH-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 4444444332 3567778888888888899999999999988865 56677777777777 6 899999999988
Q ss_pred HHhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhC-CCCCC---HhhHHHHHHHHHH----cCCHHHHHHHHHHH
Q 004856 565 KESYGYEPSQEHYASMVNLLGR----AGHMDEARELVKDM-PFKPD---ARVWGPLLSACKM----HSETELAELTAEKL 632 (727)
Q Consensus 565 ~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~----~g~~~~A~~~~~~~ 632 (727)
.+. + +...+..|...|.. .+++++|.+++++. ...|. ...+..|...|.. .++.++|+..++++
T Consensus 80 ~~~-g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 80 VEA-G---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHT-T---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHC-C---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 764 3 56677788888877 88999999999988 33443 6778888888877 78999999999999
Q ss_pred HccCCCCcchHHHHHHHHHhc-C-----ChhHHHHHHHHHHhCCC
Q 004856 633 ISMEPENAGNYVLLSNIYAAA-G-----KWNGVAKMRTFLRDRGL 671 (727)
Q Consensus 633 ~~~~p~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~~ 671 (727)
.+. |.++.++..|+.+|... | +.++|.+++++..+.|.
T Consensus 156 ~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 156 SSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 988 66788899999998765 3 89999999999887763
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.78 E-value=4.8e-08 Score=82.48 Aligned_cols=113 Identities=11% Similarity=0.025 Sum_probs=65.4
Q ss_pred CCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHH
Q 004856 534 VRPD-LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWG 610 (727)
Q Consensus 534 ~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 610 (727)
+.|+ ...+......+.+.|++++|+..|++..+. .+.+...|..+..+|.+.|++++|++.+++. .+.| +...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 4453 345566666666666666666666666643 1223555666666666666666666666655 3333 334555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHH
Q 004856 611 PLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSN 648 (727)
Q Consensus 611 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 648 (727)
.+..++...|++++|+..++++++++|++..++..|..
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 55555666666666666666666666666655555544
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.74 E-value=4.6e-08 Score=85.20 Aligned_cols=100 Identities=6% Similarity=-0.040 Sum_probs=78.0
Q ss_pred CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHH
Q 004856 570 YEPS-QEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLL 646 (727)
Q Consensus 570 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 646 (727)
+.|+ ...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..|+++++++|+++.++..+
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 3444 446666777777778888888777776 3445 456777777778888888888888888888888888888888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 004856 647 SNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 647 ~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
+.+|...|++++|...+++..+.
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888888887665
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.74 E-value=1e-07 Score=94.86 Aligned_cols=222 Identities=10% Similarity=0.024 Sum_probs=145.7
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHH
Q 004856 413 HDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGEL 492 (727)
Q Consensus 413 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 492 (727)
.|++++|.+++++..+... .. + +...++++.|...+..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 4566777777776654211 00 0 11135666666655443 3456677777777777
Q ss_pred HHhccCC-----CC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--hHHHHHHHHHHHhcCCHHHHHHH
Q 004856 493 FDEEKID-----SK--DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDV---RPD--LITFLGLLTACVNAGLVEEGRII 560 (727)
Q Consensus 493 ~~~~~~~-----~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~~~~~~g~~~~a~~~ 560 (727)
|.+.... .+ -...|+.+...|...|++++|+..|++..+.-. .|. ..++..+..+|.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 7753211 11 134778888889999999999999988765210 122 3567788888888 999999999
Q ss_pred HHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC-CC---CCC----HhhHHHHHHHHHHcCCHHHHHHH
Q 004856 561 FKEMKESYGYEPS----QEHYASMVNLLGRAGHMDEARELVKDM-PF---KPD----ARVWGPLLSACKMHSETELAELT 628 (727)
Q Consensus 561 ~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~ll~~~~~~g~~~~A~~~ 628 (727)
|++..+.+.-..+ ..++..+...|.+.|++++|++.+++. .+ .++ ...+..+...+...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9988754211111 457888899999999999999999887 11 111 12455555667778999999999
Q ss_pred HHHHHccCCCCcch-----HHHHHHHHHhcCChhHHHHH
Q 004856 629 AEKLISMEPENAGN-----YVLLSNIYAAAGKWNGVAKM 662 (727)
Q Consensus 629 ~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~~ 662 (727)
+++++ +.|..... ...++.++ ..|+.+.+.++
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999 88865433 33455555 56777666553
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.2e-07 Score=103.60 Aligned_cols=151 Identities=17% Similarity=0.105 Sum_probs=118.2
Q ss_pred cCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHH
Q 004856 516 HGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGHMDEA 593 (727)
Q Consensus 516 ~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 593 (727)
.|++++|++.|++..+. .| +...+..+...+...|++++|...+++..+. .|+ ...+..+...|.+.|++++|
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL---HPGHPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---STTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 47889999999999874 56 5788999999999999999999999999853 454 77899999999999999999
Q ss_pred HHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhc---CChhHHHHHHHHHHh
Q 004856 594 RELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAA---GKWNGVAKMRTFLRD 668 (727)
Q Consensus 594 ~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~a~~~~~~m~~ 668 (727)
.+.+++. ...| +...|..+...+...|++++|...++++++++|++..++..++.++... |++++|.+.+++..+
T Consensus 77 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 77 AVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9999988 4445 4568888888899999999999999999999999999999999999999 999999999999877
Q ss_pred CCC
Q 004856 669 RGL 671 (727)
Q Consensus 669 ~~~ 671 (727)
.+.
T Consensus 157 ~~p 159 (568)
T 2vsy_A 157 QGV 159 (568)
T ss_dssp HTC
T ss_pred cCC
Confidence 654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.73 E-value=9.5e-08 Score=80.62 Aligned_cols=100 Identities=12% Similarity=0.102 Sum_probs=71.7
Q ss_pred CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHH
Q 004856 570 YEPS-QEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLL 646 (727)
Q Consensus 570 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 646 (727)
+.|+ ...+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4454 345666777777777777777777776 3444 455666666677777777777777777777777777777777
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 004856 647 SNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 647 ~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
+.+|...|++++|.+.+++..+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 77777777777777777776554
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.6e-07 Score=102.86 Aligned_cols=182 Identities=10% Similarity=0.030 Sum_probs=119.5
Q ss_pred HhcCChHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHh
Q 004856 411 VTHDQSLEALRLFSEMK--------LEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAK 482 (727)
Q Consensus 411 ~~~g~~~~A~~~~~~m~--------~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 482 (727)
...|++++|++.|++.. .. -..+...+..+..++...|++++|...++.+.+.. +.+...+..+..+|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 56777777777777776 22 12234556666667777777777777777777654 3455666667777777
Q ss_pred cCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHH
Q 004856 483 CGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRII 560 (727)
Q Consensus 483 ~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~ 560 (727)
.|++++|...|++.....| +...|..+..+|.+.|++++ ++.|++..+. .| +...|..+..++...|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777777443334 55677777777777777777 7777777763 45 456677777777777777777777
Q ss_pred HHHhHHhcCCCCC-hhHHHHHHHHHHhcCC--------HHHHHHHHHhC
Q 004856 561 FKEMKESYGYEPS-QEHYASMVNLLGRAGH--------MDEARELVKDM 600 (727)
Q Consensus 561 ~~~~~~~~~~~p~-~~~~~~li~~~~~~g~--------~~~A~~~~~~~ 600 (727)
|+++. .+.|+ ...+..+..++...|+ +++|.+.+..+
T Consensus 557 ~~~al---~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 557 LDEVP---PTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHTSC---TTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHhhc---ccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 77766 34555 4466666666655443 55566666555
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.71 E-value=1.8e-05 Score=83.85 Aligned_cols=205 Identities=14% Similarity=0.050 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHH-HHHHHh
Q 004856 417 LEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMA-GELFDE 495 (727)
Q Consensus 417 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~ 495 (727)
+.+..+|+++.... +.+...+...+.-+.+.|+.+.|..+++..... +.+...+.. |+...+.++. ..+.+.
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~ 268 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHH
Confidence 44667888877653 334566666677777888999999999998888 434333332 2222111111 112211
Q ss_pred ccCC----------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh-cCCHHHHHHHHHHh
Q 004856 496 EKID----------SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN-AGLVEEGRIIFKEM 564 (727)
Q Consensus 496 ~~~~----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~g~~~~a~~~~~~~ 564 (727)
.... ......|...+..+.+.++.+.|..+|++. ... ..+...|......-.. .++.+.|..+|+..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 1000 012356777777777888899999999999 321 1244444432222222 33699999999999
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 004856 565 KESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLIS 634 (727)
Q Consensus 565 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 634 (727)
.+.++ -+...+...++...+.|+.+.|..+|+++. .....|...+..-..+|+.+.+..+++++.+
T Consensus 347 l~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 347 LLKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 98643 234566778888889999999999999983 3567898888888889999999998888875
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.9e-06 Score=84.34 Aligned_cols=149 Identities=17% Similarity=0.161 Sum_probs=76.3
Q ss_pred CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHH--HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC-----
Q 004856 517 GDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVE--EGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGH----- 589 (727)
Q Consensus 517 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----- 589 (727)
+++++++++++++.+.. +-|..+|..-..++.+.|.++ ++++.++.+.+. -+-|...|+.-..++.+.|.
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhh
Confidence 45555555555555532 224555555555555555555 555555555543 12233444444444444443
Q ss_pred -HHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCC-HHHHHHHHHHHHccC---CCCcchHHHHHHHHHhcCChhHHHHH
Q 004856 590 -MDEARELVKDM-PFKP-DARVWGPLLSACKMHSE-TELAELTAEKLISME---PENAGNYVLLSNIYAAAGKWNGVAKM 662 (727)
Q Consensus 590 -~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~-~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~ 662 (727)
++++++.++++ ...| |...|+-+...+.+.|+ .+.....++++.+++ |.++.++..++.+|.+.|+.++|.++
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 55555555544 2233 44455555555555554 233444555555544 55555566666666666666666666
Q ss_pred HHHHHh
Q 004856 663 RTFLRD 668 (727)
Q Consensus 663 ~~~m~~ 668 (727)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666554
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.70 E-value=5.4e-07 Score=83.79 Aligned_cols=188 Identities=11% Similarity=0.046 Sum_probs=125.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHH
Q 004856 402 SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYA 481 (727)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 481 (727)
.+-.....+...|++++|+..|++.... .|+........ . .. ............+...|.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~-~---~~--------------~~~~~~~~~~~~lg~~~~ 65 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWT-N---VD--------------KNSEISSKLATELALAYK 65 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHH-H---SC--------------TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHh-h---hc--------------chhhhhHHHHHHHHHHHH
Confidence 3344556677889999999999988774 34432211110 0 00 001112233345778889
Q ss_pred hcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCC--HHHH
Q 004856 482 KCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGL--VEEG 557 (727)
Q Consensus 482 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~--~~~a 557 (727)
+.|++++|...|++.....| +...|..+...|...|++++|+..|++.++ +.| +..++..+..++...|. .+.+
T Consensus 66 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~ 143 (208)
T 3urz_A 66 KNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKL 143 (208)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999998544345 678899999999999999999999999998 456 57788888888766554 3444
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhhHHHHHH
Q 004856 558 RIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPDARVWGPLLS 614 (727)
Q Consensus 558 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~ 614 (727)
...++... ...|....+..+..++...|++++|...|++. ...|+......+..
T Consensus 144 ~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 144 ETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 55555443 22333334445566777789999999999987 67888665554433
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.70 E-value=4.5e-07 Score=85.61 Aligned_cols=186 Identities=11% Similarity=-0.027 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-c-hHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCH----HHHHH
Q 004856 435 FVTIINILPACVNIGALEHVKYLHGYSMKLGLN-S-LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI----ITWNS 508 (727)
Q Consensus 435 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~ 508 (727)
...+......+...|++++|...++.+.+.... + ....+..+..+|.+.|++++|...|++.....|+. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344556667788999999999999999986432 2 24577788899999999999999999965434532 24555
Q ss_pred HHHHHHH------------------cCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHhHHhcC
Q 004856 509 MISAYAK------------------HGDWSQCFKLYTQMKQSDVRPDLI-TFLGLLTACVNAGLVEEGRIIFKEMKESYG 569 (727)
Q Consensus 509 li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 569 (727)
+..++.. .|++++|+..|+++++. .|+.. ........ ..+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----------~~~~~~~~---- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----------VFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----------HHHHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----------HHHHHHHH----
Confidence 5555554 57899999999999984 56533 22221110 00111111
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----hhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcc
Q 004856 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPDA----RVWGPLLSACKMHSETELAELTAEKLISMEPENAG 641 (727)
Q Consensus 570 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 641 (727)
.....+...|.+.|++++|...++++ ...|+. ..+..+..++.+.|+.++|+..++++....|++..
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 12234677888899999999999887 333432 45777778899999999999999999888887654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=8.1e-07 Score=87.31 Aligned_cols=155 Identities=10% Similarity=0.015 Sum_probs=88.7
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHH-HHHHHcC
Q 004856 439 INILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMI-SAYAKHG 517 (727)
Q Consensus 439 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li-~~~~~~g 517 (727)
..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|...+++.....|+........ ..+...+
T Consensus 121 ~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~ 199 (287)
T 3qou_A 121 AQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQA 199 (287)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhc
Confidence 333444444555555555555444433 23344555566666777777777777776554455543332222 2345556
Q ss_pred ChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCCHHHH
Q 004856 518 DWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS---QEHYASMVNLLGRAGHMDEA 593 (727)
Q Consensus 518 ~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A 593 (727)
+.++|++.+++..+. .| +...+..+..++...|++++|...++++.+. .|+ ...+..++..|...|+.++|
T Consensus 200 ~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~---~p~~~~~~a~~~l~~~~~~~g~~~~a 274 (287)
T 3qou_A 200 ADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRX---DLTAADGQTRXTFQEILAALGTGDAL 274 (287)
T ss_dssp TSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred ccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc---ccccccchHHHHHHHHHHHcCCCCcH
Confidence 666667777766663 34 4556666677777777777777777776654 232 44566666666666666666
Q ss_pred HHHHHh
Q 004856 594 RELVKD 599 (727)
Q Consensus 594 ~~~~~~ 599 (727)
...+++
T Consensus 275 ~~~~r~ 280 (287)
T 3qou_A 275 ASXYRR 280 (287)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.65 E-value=2e-07 Score=84.15 Aligned_cols=156 Identities=8% Similarity=-0.033 Sum_probs=111.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH-HHhc
Q 004856 474 TAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA-CVNA 551 (727)
Q Consensus 474 ~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~ 551 (727)
..+...+.+.|++++|...|++.....| +...|..+...+...|++++|+..+++.... .|+...+..+... +...
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhh
Confidence 3455667788888899888888554334 5678888888888999999999999888763 3444333222211 1222
Q ss_pred CCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HhhHHHHHHHHHHcCCHHHHH
Q 004856 552 GLVEEGRIIFKEMKESYGYEP-SQEHYASMVNLLGRAGHMDEARELVKDM-PFKPD---ARVWGPLLSACKMHSETELAE 626 (727)
Q Consensus 552 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~~g~~~~A~ 626 (727)
+...+|...+++..+. .| +...+..+...+...|++++|...++++ ...|+ ...+..+...+...|+.++|.
T Consensus 88 ~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 88 AAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred cccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2233467788887754 44 4678888888999999999999998887 55554 447788888888899999999
Q ss_pred HHHHHHHc
Q 004856 627 LTAEKLIS 634 (727)
Q Consensus 627 ~~~~~~~~ 634 (727)
..|++++.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98888764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.5e-07 Score=93.72 Aligned_cols=196 Identities=11% Similarity=-0.022 Sum_probs=145.6
Q ss_pred CCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 004856 448 IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYT 527 (727)
Q Consensus 448 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 527 (727)
.|++++|..+++...+..-. . .+...+++++|...|.+ ....|...|++++|...|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-------------a~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-------------AAVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-------------HHHHHHHTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-------------HHHHHHHcCCHHHHHHHHH
Confidence 45677888888777653211 0 11114777777777765 3567888999999999999
Q ss_pred HHHHCCC---CC-C-hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC--CCC--hhHHHHHHHHHHhcCCHHHHHHHHH
Q 004856 528 QMKQSDV---RP-D-LITFLGLLTACVNAGLVEEGRIIFKEMKESYGY--EPS--QEHYASMVNLLGRAGHMDEARELVK 598 (727)
Q Consensus 528 ~m~~~g~---~p-~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~p~--~~~~~~li~~~~~~g~~~~A~~~~~ 598 (727)
+..+... .+ . ..+|..+..+|...|++++|+..+++..+.+.- .+. ..++..+...|.+ |++++|++.++
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 8875311 11 1 457888999999999999999999987654211 121 4578889999988 99999999998
Q ss_pred hC-CCCC---C----HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCc------chHHHHHHHHHhcCChhHHHHHHH
Q 004856 599 DM-PFKP---D----ARVWGPLLSACKMHSETELAELTAEKLISMEPENA------GNYVLLSNIYAAAGKWNGVAKMRT 664 (727)
Q Consensus 599 ~~-~~~p---~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~ 664 (727)
+. .+.| + ..++..+...+...|++++|+..+++++++.|.+. ..+..++.++...|++++|...++
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 87 1111 1 34677778889999999999999999999766443 266677888899999999999999
Q ss_pred HHH
Q 004856 665 FLR 667 (727)
Q Consensus 665 ~m~ 667 (727)
+..
T Consensus 220 ~al 222 (307)
T 2ifu_A 220 ESY 222 (307)
T ss_dssp HHT
T ss_pred HHh
Confidence 876
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.60 E-value=1e-06 Score=82.21 Aligned_cols=90 Identities=12% Similarity=0.058 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 004856 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLL 584 (727)
Q Consensus 505 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 584 (727)
.+..+...+...|++++|++.|++. +.|+...+..+..++...|++++|...++...+. .+.+...+..+..+|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHH
Confidence 3444455555666666666666554 2445555556666666666666666666655543 122234444445555
Q ss_pred HhcCCHHHHHHHHHhC
Q 004856 585 GRAGHMDEARELVKDM 600 (727)
Q Consensus 585 ~~~g~~~~A~~~~~~~ 600 (727)
.+.|++++|.+.+++.
T Consensus 82 ~~~~~~~~A~~~~~~a 97 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEA 97 (213)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHH
Confidence 5555555555444443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.59 E-value=2.5e-06 Score=79.46 Aligned_cols=145 Identities=13% Similarity=-0.041 Sum_probs=104.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC
Q 004856 473 NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAG 552 (727)
Q Consensus 473 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 552 (727)
+..+...+...|++++|...|++.. .|+...|..+...|...|++++|++.|++..+.. +.+...+..+..++...|
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 4455667889999999999999986 7788999999999999999999999999999853 336778999999999999
Q ss_pred CHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHH
Q 004856 553 LVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPD-ARVWGPLLSACKMHSETELAELTAEK 631 (727)
Q Consensus 553 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~ 631 (727)
++++|...++...+. .|+..... +...|. ...|+ ...|..+...+...|++++|...+++
T Consensus 86 ~~~~A~~~~~~al~~---~~~~~~~~-----~~~~~~-----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQ---LRGNQLID-----YKILGL-----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp CHHHHHHHHHHHHHT---TTTCSEEE-----CGGGTB-----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHh---CCCccHHH-----HHHhcc-----------ccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999999864 22211000 000000 12232 23444555556666666666666666
Q ss_pred HHccCCCC
Q 004856 632 LISMEPEN 639 (727)
Q Consensus 632 ~~~~~p~~ 639 (727)
++++.|++
T Consensus 147 al~~~p~~ 154 (213)
T 1hh8_A 147 ATSMKSEP 154 (213)
T ss_dssp HHTTCCSG
T ss_pred HHHcCccc
Confidence 66666644
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.58 E-value=5.6e-06 Score=81.65 Aligned_cols=161 Identities=9% Similarity=-0.012 Sum_probs=113.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCC-CCChH----HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----hhHHH
Q 004856 508 SMISAYAKHGDWSQCFKLYTQMKQSDV-RPDLI----TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS----QEHYA 578 (727)
Q Consensus 508 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~ 578 (727)
..+..+...|++++|.+++++..+... .|+.. .+..+...+...|++++|...++.+.....-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 345667788888888888888776321 12211 2334556666677888888888888763111222 23678
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-----C--C-CCH-hhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC------cchH
Q 004856 579 SMVNLLGRAGHMDEARELVKDMP-----F--K-PDA-RVWGPLLSACKMHSETELAELTAEKLISMEPEN------AGNY 643 (727)
Q Consensus 579 ~li~~~~~~g~~~~A~~~~~~~~-----~--~-p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~ 643 (727)
.+...|...|++++|...++++- . . +.. .++..+...|...|++++|+..+++++++.+.. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 88888888888888888887761 1 1 122 366777778999999999999999998865332 5678
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHHh
Q 004856 644 VLLSNIYAAAGK-WNGVAKMRTFLRD 668 (727)
Q Consensus 644 ~~l~~~~~~~g~-~~~a~~~~~~m~~ 668 (727)
..++.+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 899999999995 6999999887653
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.57 E-value=1.5e-07 Score=92.19 Aligned_cols=192 Identities=7% Similarity=-0.038 Sum_probs=132.9
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHH
Q 004856 470 SSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTA 547 (727)
Q Consensus 470 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~ 547 (727)
...+..+...+.+.|++++|...|++.....| +...|..+..+|.+.|++++|+..+++..+. .| +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 44556667778888888888888887543344 7788889999999999999999999999874 55 57788889999
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHH
Q 004856 548 CVNAGLVEEGRIIFKEMKESYGYEPSQ-EHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAE 626 (727)
Q Consensus 548 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 626 (727)
+...|++++|...|+...+. .|+. ..+...+....+..+...... .......++...... +..+. .|+.++|.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~-l~~l~-~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSY-LTRLI-AAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHH-HHHHH-HHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHH-HHHHH-HHHHHHHH
Confidence 99999999999999988754 2321 111112222222111111111 222233333333333 33333 68899999
Q ss_pred HHHHHHHccCCCCcchHHHHHHHHHhc-CChhHHHHHHHHHHhC
Q 004856 627 LTAEKLISMEPENAGNYVLLSNIYAAA-GKWNGVAKMRTFLRDR 669 (727)
Q Consensus 627 ~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 669 (727)
+.++++++++|++......+...+.+. +.+++|.++|.++.+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999998877777777777776 7789999999887653
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.57 E-value=2e-06 Score=84.90 Aligned_cols=163 Identities=9% Similarity=-0.026 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh------HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC--CCCC--
Q 004856 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL------ITFLGLLTACVNAGLVEEGRIIFKEMKESYG--YEPS-- 573 (727)
Q Consensus 504 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~p~-- 573 (727)
..+...+..+...|++++|++.+++..+..- .+. ..+..+...+...|++++|...+++..+... ..+.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEE-YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcccc-CChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 3445566677788888888888887776431 121 1233455566777888888888887764311 1111
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-----HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCC------
Q 004856 574 QEHYASMVNLLGRAGHMDEARELVKDM----PFKPD-----ARVWGPLLSACKMHSETELAELTAEKLISMEPE------ 638 (727)
Q Consensus 574 ~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~------ 638 (727)
..+++.+...|...|++++|...++++ ...|+ ..++..+...|...|++++|+..+++++++.++
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 347778888888888888888888776 11222 146777777799999999999999998875432
Q ss_pred CcchHHHHHHHHHhcCChhHH-HHHHHHHH
Q 004856 639 NAGNYVLLSNIYAAAGKWNGV-AKMRTFLR 667 (727)
Q Consensus 639 ~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 667 (727)
-..+|..++.+|.+.|++++| ...+++..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 146788999999999999999 77677654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=2e-07 Score=81.25 Aligned_cols=96 Identities=11% Similarity=0.056 Sum_probs=71.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHH
Q 004856 574 QEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYA 651 (727)
Q Consensus 574 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 651 (727)
...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 445566667777777777777777766 3344 45566667777788888888888888888888888888888888888
Q ss_pred hcCChhHHHHHHHHHHhC
Q 004856 652 AAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 652 ~~g~~~~a~~~~~~m~~~ 669 (727)
..|++++|...+++..+.
T Consensus 101 ~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 888888888888776554
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.55 E-value=1.3e-06 Score=77.48 Aligned_cols=127 Identities=8% Similarity=-0.033 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHH
Q 004856 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACK 617 (727)
Q Consensus 540 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 617 (727)
.+..+...+...|++++|...++...+. .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3445555555666666666666665543 1223555566666666666666666666655 2233 4456667777788
Q ss_pred HcCCHHHHHHHHHHHHccCCCCcchHHHHHH--HHHhcCChhHHHHHHHHHHh
Q 004856 618 MHSETELAELTAEKLISMEPENAGNYVLLSN--IYAAAGKWNGVAKMRTFLRD 668 (727)
Q Consensus 618 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~a~~~~~~m~~ 668 (727)
..|++++|...++++++..|.+...+..+.. .+...|++++|.+.+.....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 8889999999999999998888877754444 47788999999998887643
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.54 E-value=4.3e-05 Score=74.70 Aligned_cols=228 Identities=8% Similarity=-0.055 Sum_probs=160.0
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhcCC--ChHHHHHHHHHHHHhCCCchHhHHHHHHHHH----Hhc---C
Q 004856 415 QSLEALRLFSEMKLEGVEVDFVT-IINILPACVNIG--ALEHVKYLHGYSMKLGLNSLSSVNTAIFISY----AKC---G 484 (727)
Q Consensus 415 ~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g 484 (727)
..++|++++++++.. .|+..| ++.--.++...+ .++++..+++.+.... +.+..+++.--..+ .+. +
T Consensus 48 ~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 48 YSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC
Confidence 335677777666653 444433 344444455555 6777777777666654 22333333322222 334 6
Q ss_pred CHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCChH--HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC------HH
Q 004856 485 CIEMAGELFDEEKID-SKDIITWNSMISAYAKHGDWS--QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL------VE 555 (727)
Q Consensus 485 ~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~------~~ 555 (727)
+++++..+++++... +.+..+|+--.-.+.+.|+++ ++++.++++++.. .-|...|+.......+.+. ++
T Consensus 125 ~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHH
Confidence 788888888885543 458889998888888889888 9999999999854 3377788877777777776 89
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH-HHHHHHhC-CC----CCCHhhHHHHHHHHHHcCCHHHHHHHH
Q 004856 556 EGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE-ARELVKDM-PF----KPDARVWGPLLSACKMHSETELAELTA 629 (727)
Q Consensus 556 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~ll~~~~~~g~~~~A~~~~ 629 (727)
++++.++.+... .+-|...|+.+...+.+.|+..+ +.++.++. .. ..+...+..+...+.+.|+.++|++++
T Consensus 204 eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 204 EELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 999999998865 34457788888888888887444 55677766 22 236678888888899999999999999
Q ss_pred HHHHc-cCCCCcchHHHHHH
Q 004856 630 EKLIS-MEPENAGNYVLLSN 648 (727)
Q Consensus 630 ~~~~~-~~p~~~~~~~~l~~ 648 (727)
+.+.+ .+|.....+...+.
T Consensus 282 ~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 282 DLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHhccChHHHHHHHHHHh
Confidence 99996 79977766665543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.54 E-value=6.4e-06 Score=76.69 Aligned_cols=160 Identities=9% Similarity=-0.045 Sum_probs=98.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC----ChHHHHHHHHHHHHhCCCchHhHHH
Q 004856 399 TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG----ALEHVKYLHGYSMKLGLNSLSSVNT 474 (727)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~ 474 (727)
++.++..|...|...+++++|+..|++..+.| +...+..+-..+.. + +.++|..++....+.| +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 44555556666666666666666666666544 33444444444554 4 5666666666665544 334445
Q ss_pred HHHHHHHh----cCCHHHHHHHHHhccCCCCC---HHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChHHHHH
Q 004856 475 AIFISYAK----CGCIEMAGELFDEEKIDSKD---IITWNSMISAYAK----HGDWSQCFKLYTQMKQSDVRPDLITFLG 543 (727)
Q Consensus 475 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~---~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 543 (727)
.|..+|.. .+++++|...|++.....++ ...+..|...|.. .+++++|+..|++..+. .++...+..
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~ 167 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYW 167 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHH
Confidence 55555555 66777777777775543332 5667777777776 66778888888777764 234455666
Q ss_pred HHHHHHhc-C-----CHHHHHHHHHHhHHh
Q 004856 544 LLTACVNA-G-----LVEEGRIIFKEMKES 567 (727)
Q Consensus 544 ll~~~~~~-g-----~~~~a~~~~~~~~~~ 567 (727)
|...|... | +.++|..+|+...+.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 66666543 2 677777777777765
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.53 E-value=1.7e-06 Score=72.29 Aligned_cols=114 Identities=22% Similarity=0.242 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHH
Q 004856 539 ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSAC 616 (727)
Q Consensus 539 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 616 (727)
..+..+...+...|++++|...++++.+. .+.+...+..+...+.+.|++++|..+++++ ...| +...|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 34555555555666666666666655543 1223445555666666666666666666555 2222 445666777778
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcC
Q 004856 617 KMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAG 654 (727)
Q Consensus 617 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 654 (727)
...|++++|...++++++..|.++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88888888888888888888888888888887776554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.4e-06 Score=81.59 Aligned_cols=183 Identities=11% Similarity=-0.029 Sum_probs=114.3
Q ss_pred hcCCHHHHHHHHHhccCCCC-CHHHHHHH-------HHHHHHcCChHHHHHHHHHHHHCCCCCCh---------------
Q 004856 482 KCGCIEMAGELFDEEKIDSK-DIITWNSM-------ISAYAKHGDWSQCFKLYTQMKQSDVRPDL--------------- 538 (727)
Q Consensus 482 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------------- 538 (727)
..++.+.|.+.|.+.....| ....|+.+ ...+...++..+++..+.+-.+ +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 45777777777777554444 45677766 4555555555555555555443 22321
Q ss_pred -------HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----h
Q 004856 539 -------ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDA----R 607 (727)
Q Consensus 539 -------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~----~ 607 (727)
.....+...+...|++++|.++|+.+... .|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 12233556667777888888777766632 344335555666777778888888888766333322 2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHccC--CC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 608 VWGPLLSACKMHSETELAELTAEKLISME--PE-NAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 608 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
.+..+..++...|++++|+..++++.... |. .+.....++.++.+.|+.++|...|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 45555666777888888888888776532 43 3346667777788888888888888777665
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.50 E-value=2.1e-05 Score=77.50 Aligned_cols=161 Identities=11% Similarity=0.013 Sum_probs=120.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCCCC---CH----HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----hHHHH
Q 004856 475 AIFISYAKCGCIEMAGELFDEEKIDSK---DI----ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVR-PD----LITFL 542 (727)
Q Consensus 475 ~li~~~~~~g~~~~A~~~~~~~~~~~~---~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~ 542 (727)
..+..+...|++++|...+++.....+ +. ..+..+...+...|++++|+..|++..+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346678899999999999998654332 21 12334666667778999999999999884322 23 23689
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhc----CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HhhH
Q 004856 543 GLLTACVNAGLVEEGRIIFKEMKESY----GYEPS-QEHYASMVNLLGRAGHMDEARELVKDM-------PFKPD-ARVW 609 (727)
Q Consensus 543 ~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~ 609 (727)
.+..+|...|++++|..+++++.+.. +..+. ..++..+...|.+.|++++|.+.+++. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 99999999999999999999987421 11222 347888999999999999999999876 11222 4577
Q ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHcc
Q 004856 610 GPLLSACKMHS-ETELAELTAEKLISM 635 (727)
Q Consensus 610 ~~ll~~~~~~g-~~~~A~~~~~~~~~~ 635 (727)
..+...+...| ++++|...+++++++
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 77778899999 579999999998863
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=1.8e-06 Score=72.86 Aligned_cols=117 Identities=10% Similarity=0.020 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHH
Q 004856 538 LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSA 615 (727)
Q Consensus 538 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~ 615 (727)
...+..+...+...|++++|...+++.... .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 344555555666666666666666666543 1224455666666666666666666666655 2233 34566667777
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCCh
Q 004856 616 CKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKW 656 (727)
Q Consensus 616 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 656 (727)
+...|++++|...++++++..|+++..+..++.++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 88888999999999999999998888888888888888875
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.49 E-value=1.6e-05 Score=84.33 Aligned_cols=374 Identities=9% Similarity=-0.038 Sum_probs=215.1
Q ss_pred ccC-ChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCC--CCeehHHHHHHHHHhcCC-chHHHH
Q 004856 245 ELK-SLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD--KDRVVWNIMISAYYQSGF-PKESLE 320 (727)
Q Consensus 245 ~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~-~~~A~~ 320 (727)
+.| ++..|+.+|+.++..-+. |+.+.+..+|++... |++..|...+.-..+.+. .+....
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~----------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS----------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHH
T ss_pred HcCcchHHHHHHHHHHHHHCCC----------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHH
Confidence 345 477888888887765311 889999999998765 678888888877776663 455677
Q ss_pred HHHHHHHc-CCCC-ChhhHHHHHHHhhc----CCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhc
Q 004856 321 LLMCMVRS-GFRA-DLFTAIAAVSSIST----MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDS 394 (727)
Q Consensus 321 ~~~~m~~~-g~~p-~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 394 (727)
+|+..... |..| +...|...+..+.. .++.+.+..+|+.+++.....-..+|......-. ......+.++..+
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~-~~~~~~~~~~~~~ 148 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFEL-ELNKITGKKIVGD 148 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH-HHCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHH-HhccccHHHHHHH
Confidence 77776653 4334 44555555555432 3467778888888886321111122222221111 1112222222211
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC--CC-----hHHHHHHHHHHHHhCCC
Q 004856 395 VKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNI--GA-----LEHVKYLHGYSMKLGLN 467 (727)
Q Consensus 395 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~--~~-----~~~a~~~~~~~~~~~~~ 467 (727)
. .+.+..|..+++++...--..+...+...+.--... +. .+.+..+++.++... +
T Consensus 149 ---------------~--~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p 210 (493)
T 2uy1_A 149 ---------------T--LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-Y 210 (493)
T ss_dssp ---------------H--HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-T
T ss_pred ---------------H--hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-C
Confidence 1 112333344443333210001222333333322111 11 344666788877754 4
Q ss_pred chHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHCC---------CCC-
Q 004856 468 SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI-ITWNSMISAYAKHGDWSQCFKLYTQMKQSD---------VRP- 536 (727)
Q Consensus 468 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------~~p- 536 (727)
.....|-..+..+.+.|+.+.|..+|++.... |.. ..|. .|+...+.++. ++.+.+.- ..+
T Consensus 211 ~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~ 282 (493)
T 2uy1_A 211 YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFS 282 (493)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcc
Confidence 55777877888888999999999999985544 543 3333 23322222222 22222210 011
Q ss_pred --ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC-CHHHHHHHHHhC--CCCCCHhhHHH
Q 004856 537 --DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG-HMDEARELVKDM--PFKPDARVWGP 611 (727)
Q Consensus 537 --~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~--~~~p~~~~~~~ 611 (727)
....|...+....+.+..+.|..+|+.+ .. . ..+..+|...+..-.+.| +.+.|.++|+.. ....++..|..
T Consensus 283 ~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~ 359 (493)
T 2uy1_A 283 KELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-E-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEE 359 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-S-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-C-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHH
Confidence 1245666677777788899999999998 32 1 234555654444444444 699999999877 22223445777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004856 612 LLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRD 668 (727)
Q Consensus 612 ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 668 (727)
.+......|+.+.|..+++++. .....+...+..-...|+.+.+..++++..+
T Consensus 360 yid~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 360 FFLFLLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777788999999999999972 3456677777777778999999998887764
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.47 E-value=9.5e-07 Score=88.96 Aligned_cols=94 Identities=12% Similarity=0.022 Sum_probs=77.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHH
Q 004856 574 QEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYA 651 (727)
Q Consensus 574 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 651 (727)
...|..+..+|.+.|++++|+..++++ ...| +...|..+..++...|++++|+..++++++++|++..++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 356777788888888888888888776 3344 55677788888999999999999999999999999999999999999
Q ss_pred hcCChhHH-HHHHHHHH
Q 004856 652 AAGKWNGV-AKMRTFLR 667 (727)
Q Consensus 652 ~~g~~~~a-~~~~~~m~ 667 (727)
..|++++| ...++.|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998 44555553
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.7e-06 Score=73.43 Aligned_cols=114 Identities=9% Similarity=0.012 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHH
Q 004856 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACK 617 (727)
Q Consensus 540 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 617 (727)
.+..+...+...|++++|...+++..+. .+.+...+..+...|...|++++|.+.++++ ...| +...|..+...+.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 3444444444455555555555444421 1113344445555555555555555555544 2222 3445666666677
Q ss_pred HcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCC
Q 004856 618 MHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGK 655 (727)
Q Consensus 618 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 655 (727)
..|++++|+..++++++.+|.+...+..++.++...|+
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888887776653
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=5.1e-07 Score=78.60 Aligned_cols=114 Identities=11% Similarity=0.001 Sum_probs=79.0
Q ss_pred HHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 004856 526 YTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFK 603 (727)
Q Consensus 526 ~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~ 603 (727)
|+++.. +.| +...+..+...+...|++++|...|+.+... -+.+...|..+..+|.+.|++++|++.+++. ...
T Consensus 10 ~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 10 IAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp HHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 444443 344 3445666677777777777777777777654 2234666777777777778888888777776 334
Q ss_pred C-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchH
Q 004856 604 P-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNY 643 (727)
Q Consensus 604 p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 643 (727)
| +...|..+..++...|++++|+..+++++++.|+++...
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 4 445666777778888888888888888888888766553
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.45 E-value=2.2e-06 Score=81.76 Aligned_cols=137 Identities=10% Similarity=-0.043 Sum_probs=96.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHH
Q 004856 506 WNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS--QEHYASMVNL 583 (727)
Q Consensus 506 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~ 583 (727)
+-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... . .|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHH
Confidence 344566777888888888888887763 365445556666788888888888888755421 1 121 2366777888
Q ss_pred HHhcCCHHHHHHHHHhCC---CCCC--HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHH
Q 004856 584 LGRAGHMDEARELVKDMP---FKPD--ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLS 647 (727)
Q Consensus 584 ~~~~g~~~~A~~~~~~~~---~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 647 (727)
+.+.|++++|++.|++.. ..|. ...+.....++.+.|+.++|...++++.+.+|+ +.+...|.
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 888888888888888872 1143 235566666788999999999999999999996 55555443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.4e-06 Score=73.35 Aligned_cols=95 Identities=16% Similarity=0.075 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHh
Q 004856 575 EHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAA 652 (727)
Q Consensus 575 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 652 (727)
..+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34555666666777777777777665 3334 445666666677778888888888888888888777888888888888
Q ss_pred cCChhHHHHHHHHHHhC
Q 004856 653 AGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 653 ~g~~~~a~~~~~~m~~~ 669 (727)
.|++++|...+++..+.
T Consensus 85 ~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 85 VKEYASALETLDAARTK 101 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHh
Confidence 88888888887776654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.43 E-value=1.6e-06 Score=75.42 Aligned_cols=105 Identities=11% Similarity=0.020 Sum_probs=85.7
Q ss_pred CCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHH
Q 004856 534 VRPD-LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWG 610 (727)
Q Consensus 534 ~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 610 (727)
+.|+ ...+..+...+.+.|++++|...|+.+... -+.+...|..+..+|.+.|++++|++.|+++ .+.| +...|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 4563 557788888889999999999999998864 2334778888999999999999999999888 4555 456788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCCc
Q 004856 611 PLLSACKMHSETELAELTAEKLISMEPENA 640 (727)
Q Consensus 611 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (727)
.+..++...|++++|+..|++++++.|+++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 888889999999999999999999998643
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.41 E-value=1.8e-06 Score=74.51 Aligned_cols=95 Identities=16% Similarity=0.033 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHh
Q 004856 575 EHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAA 652 (727)
Q Consensus 575 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 652 (727)
..+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|..
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 34555666666777777777777665 3344 445666666677788888888888888888888888888888888888
Q ss_pred cCChhHHHHHHHHHHhC
Q 004856 653 AGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 653 ~g~~~~a~~~~~~m~~~ 669 (727)
.|++++|.+.+++..+.
T Consensus 99 ~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 99 LGDLDGAESGFYSARAL 115 (142)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 88888888888776554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.7e-06 Score=76.58 Aligned_cols=124 Identities=10% Similarity=0.089 Sum_probs=63.6
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHH-HHhcCCH--
Q 004856 514 AKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNL-LGRAGHM-- 590 (727)
Q Consensus 514 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~-- 590 (727)
...|++++|+..+++..+.. +.+...+..+..+|...|++++|...++++.+. .+.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 34566666666666666532 224556666666666666666666666666543 12234445555555 4455555
Q ss_pred HHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCc
Q 004856 591 DEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENA 640 (727)
Q Consensus 591 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (727)
++|...++++ ...| +...|..+...+...|++++|...++++++..|++.
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 5555555554 2223 233444444445555555555555555555555443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.1e-05 Score=79.50 Aligned_cols=164 Identities=10% Similarity=-0.025 Sum_probs=117.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CH------HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC---CC--hH
Q 004856 472 VNTAIFISYAKCGCIEMAGELFDEEKIDSK-DI------ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVR---PD--LI 539 (727)
Q Consensus 472 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~--~~ 539 (727)
.+...+..+...|++++|.+.+.+.....+ .. ..+..+...+...|++++|+..+++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444566778889999999998876332222 11 22344556677788999999999998753211 11 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHhC-CC------CC-CH
Q 004856 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS-----QEHYASMVNLLGRAGHMDEARELVKDM-PF------KP-DA 606 (727)
Q Consensus 540 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~------~p-~~ 606 (727)
+|+.+...|...|++++|..+++++.+.....|+ ..++..+...|.+.|++++|.+.+++. .. .. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888999999999999999999988732111222 257888999999999999999999876 11 11 14
Q ss_pred hhHHHHHHHHHHcCCHHHH-HHHHHHHHcc
Q 004856 607 RVWGPLLSACKMHSETELA-ELTAEKLISM 635 (727)
Q Consensus 607 ~~~~~ll~~~~~~g~~~~A-~~~~~~~~~~ 635 (727)
.+|..+...+...|+.++| ...+++++.+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 5677777789999999999 7778888763
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.35 E-value=1.6e-06 Score=74.87 Aligned_cols=107 Identities=11% Similarity=-0.013 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHH
Q 004856 538 LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSA 615 (727)
Q Consensus 538 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~ 615 (727)
...+..+...+...|++++|...|+.+... -+.+...|..+..+|.+.|++++|...+++. ...| +...|..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 344555666666777777777777776653 1234556666777777777777777777666 3334 34456666666
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCCcchHHHH
Q 004856 616 CKMHSETELAELTAEKLISMEPENAGNYVLL 646 (727)
Q Consensus 616 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 646 (727)
+...|++++|+..+++++++.|+++......
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 7888888888888888888888766655443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=6.2e-05 Score=74.38 Aligned_cols=186 Identities=13% Similarity=0.044 Sum_probs=114.7
Q ss_pred HhcC-CHHHHHHHHHhccCCC-CCHHHHHHHHHHHHHc-C-ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHH-
Q 004856 481 AKCG-CIEMAGELFDEEKIDS-KDIITWNSMISAYAKH-G-DWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVE- 555 (727)
Q Consensus 481 ~~~g-~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~-g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~- 555 (727)
...| .+++++..++.+.... .+..+|+.-...+.+. + ++++++++++++.+.. +-|...|+.-..++.+.|.++
T Consensus 99 ~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~ 177 (349)
T 3q7a_A 99 TSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGR 177 (349)
T ss_dssp HHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTC
T ss_pred HHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccc
Confidence 3344 3666666666543323 3566777766666655 5 7777777777777642 225666666555555555555
Q ss_pred -------HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC-------HHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHc
Q 004856 556 -------EGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGH-------MDEARELVKDM-PFKP-DARVWGPLLSACKMH 619 (727)
Q Consensus 556 -------~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-------~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~ 619 (727)
++++.++++.+. .+-|...|+....++.+.+. +++++++++++ ...| |...|+-+-..+.+.
T Consensus 178 ~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~ 255 (349)
T 3q7a_A 178 ISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHF 255 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred cchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 777777777764 23355667766666666665 57777777666 3444 556777766666665
Q ss_pred CCH--------------------HHHHHHHHHHHccC------CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 620 SET--------------------ELAELTAEKLISME------PENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 620 g~~--------------------~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
|+. .........+.... +..+.+...|+++|...|+.++|.++++.+.+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 256 SLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp TCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 543 22222322222222 345667789999999999999999999998654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.33 E-value=4.4e-06 Score=75.21 Aligned_cols=122 Identities=13% Similarity=0.081 Sum_probs=69.6
Q ss_pred HhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH-HHhcCCH--HH
Q 004856 481 AKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA-CVNAGLV--EE 556 (727)
Q Consensus 481 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~g~~--~~ 556 (727)
...|++++|...+++.....| +...|..+...|...|++++|+..|++..+.. +.+...+..+..+ +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 345666666666665322223 55666666666777777777777777666532 2245555566666 5566666 77
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 004856 557 GRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPD 605 (727)
Q Consensus 557 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 605 (727)
|...++.+.+. .+.+...+..+...|...|++++|...++++ ...|+
T Consensus 100 A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 100 TRAMIDKALAL--DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 77777666654 1223456666666677777777777766665 33443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=1.4e-06 Score=72.78 Aligned_cols=94 Identities=11% Similarity=0.028 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhc
Q 004856 576 HYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAA 653 (727)
Q Consensus 576 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 653 (727)
.+..+...+.+.|++++|...+++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3455667777888888888888877 4445 5567777777788899999999999999999999899999999999999
Q ss_pred CChhHHHHHHHHHHhC
Q 004856 654 GKWNGVAKMRTFLRDR 669 (727)
Q Consensus 654 g~~~~a~~~~~~m~~~ 669 (727)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999998887654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.31 E-value=9.1e-06 Score=70.33 Aligned_cols=110 Identities=13% Similarity=0.032 Sum_probs=63.9
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHH
Q 004856 537 DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS----QEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWG 610 (727)
Q Consensus 537 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 610 (727)
+...+..+...+...|++++|...|++..+ ..|+ ...+..+...|...|++++|.+.+++. ...| +...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 345566666666666777777776666663 3444 345555666666666666666666554 2233 334555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHH
Q 004856 611 PLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNI 649 (727)
Q Consensus 611 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 649 (727)
.+...+...|++++|...++++++++|++..++..+..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 555556666666666666666666666555555444443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.3e-05 Score=73.73 Aligned_cols=84 Identities=11% Similarity=-0.000 Sum_probs=38.3
Q ss_pred hcCCHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-ChHHHHHHHHHHHhcCCHH
Q 004856 482 KCGCIEMAGELFDEEKID-SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQS----DVRP-DLITFLGLLTACVNAGLVE 555 (727)
Q Consensus 482 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~ 555 (727)
..|++++|.+.++.+... ......+..+...+...|++++|+..+++..+. +..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 345666666622222211 123345555555555666666666655555431 1111 1234444555555555555
Q ss_pred HHHHHHHHhH
Q 004856 556 EGRIIFKEMK 565 (727)
Q Consensus 556 ~a~~~~~~~~ 565 (727)
+|...+++..
T Consensus 84 ~A~~~~~~al 93 (203)
T 3gw4_A 84 AARRCFLEER 93 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555444
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.30 E-value=3.5e-06 Score=68.76 Aligned_cols=97 Identities=16% Similarity=0.085 Sum_probs=75.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCC--CcchHHHHHHH
Q 004856 574 QEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPE--NAGNYVLLSNI 649 (727)
Q Consensus 574 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~ 649 (727)
...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|+..++++++..|. +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 445666777777777777777777766 2233 4556777777788888888888888888888888 88888888888
Q ss_pred HHhc-CChhHHHHHHHHHHhCC
Q 004856 650 YAAA-GKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 650 ~~~~-g~~~~a~~~~~~m~~~~ 670 (727)
|... |++++|.+.++...+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 8888 89999988888876654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=1.3e-05 Score=65.96 Aligned_cols=108 Identities=16% Similarity=0.108 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHH
Q 004856 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACK 617 (727)
Q Consensus 540 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 617 (727)
.+..+...+...|++++|...++..... .+.+...+..+...+.+.|++++|...+++. ...| +...|..+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3444455555555555555555555543 1223444555555555555555555555544 2223 3445555666677
Q ss_pred HcCCHHHHHHHHHHHHccCCCCcchHHHHHHH
Q 004856 618 MHSETELAELTAEKLISMEPENAGNYVLLSNI 649 (727)
Q Consensus 618 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 649 (727)
..|++++|...++++++.+|+++..+..+..+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 77777777777777777777666666655544
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.5e-06 Score=71.94 Aligned_cols=94 Identities=7% Similarity=0.005 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcc-------hHHHH
Q 004856 576 HYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAG-------NYVLL 646 (727)
Q Consensus 576 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~l 646 (727)
.+..+...+.+.|++++|++.|+++ .+.| +...|..+..++...|++++|+..++++++++|++.. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4566777888888888888888776 4455 4556777777788999999999999999988876543 56678
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 004856 647 SNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 647 ~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
+.++...|++++|++.+++..+.
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh
Confidence 88899999999999999876553
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.28 E-value=6.6e-06 Score=70.26 Aligned_cols=97 Identities=10% Similarity=-0.011 Sum_probs=64.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHH
Q 004856 573 SQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIY 650 (727)
Q Consensus 573 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 650 (727)
+...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|+..++++++++|+++.++..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 3445555666666666666666666554 2233 3445666666677777777777777777777777777777777777
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 004856 651 AAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 651 ~~~g~~~~a~~~~~~m~~~ 669 (727)
...|++++|...+++..+.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 7777777777777766554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.28 E-value=5.9e-06 Score=69.42 Aligned_cols=108 Identities=12% Similarity=-0.054 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHH
Q 004856 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACK 617 (727)
Q Consensus 540 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 617 (727)
.+..+...+...|++++|...|++..+. .+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3444555555555555555555555543 1223445555555666666666666655554 2333 3445566666677
Q ss_pred HcCCHHHHHHHHHHHHccC------CCCcchHHHHHHH
Q 004856 618 MHSETELAELTAEKLISME------PENAGNYVLLSNI 649 (727)
Q Consensus 618 ~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~ 649 (727)
..|++++|+..++++++++ |.+......+..+
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 7777777777777777777 6555555555444
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.28 E-value=7.1e-06 Score=75.58 Aligned_cols=96 Identities=13% Similarity=0.141 Sum_probs=40.5
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHHhccC------CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-
Q 004856 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKI------DSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQS----DVRP- 536 (727)
Q Consensus 469 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p- 536 (727)
....+..+...|...|++++|...+++... ..+ ....+..+...|...|++++|++.+++..+. +-.|
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 334444444455555555555555544211 001 1233444444555555555555555444331 0011
Q ss_pred -ChHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 004856 537 -DLITFLGLLTACVNAGLVEEGRIIFKEM 564 (727)
Q Consensus 537 -~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 564 (727)
....+..+...+...|++++|...+++.
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 0122444444444445555554444444
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.27 E-value=9.5e-06 Score=79.31 Aligned_cols=186 Identities=8% Similarity=-0.057 Sum_probs=112.2
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCC
Q 004856 440 NILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGD 518 (727)
Q Consensus 440 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~ 518 (727)
.+...+...|++++|...+..+.+.. +.+...+..+...|.+.|++++|...+++.....| +...|..+..+|...|+
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 87 (281)
T 2c2l_A 9 EQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMES 87 (281)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 33334444444444444444444432 33455666777778888888888888888555445 67788899999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 004856 519 WSQCFKLYTQMKQSDVRPDL-ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELV 597 (727)
Q Consensus 519 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 597 (727)
+++|+..|++..+. .|+. ..+...+...... .++... ...... ....+......+...+ .|+.++|.+.+
T Consensus 88 ~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~-~~~~~~~i~~~l~~l~--~~~~~~A~~~~ 158 (281)
T 2c2l_A 88 YDEAIANLQRAYSL--AKEQRLNFGDDIPSALRI---AKKKRW-NSIEER-RIHQESELHSYLTRLI--AAERERELEEC 158 (281)
T ss_dssp HHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHHH---HHHHHH-HHHHHT-CCCCCCHHHHHHHHHH--HHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHh--CccchhhHHHHHHHHHHH---HHHHHH-HHHHHH-HHhhhHHHHHHHHHHH--HHHHHHHHHHH
Confidence 99999999998873 3421 1111112211111 111221 222222 4455555555554433 68899999988
Q ss_pred HhC-CCCCCHhhHHHHHHH-HHHc-CCHHHHHHHHHHHHcc
Q 004856 598 KDM-PFKPDARVWGPLLSA-CKMH-SETELAELTAEKLISM 635 (727)
Q Consensus 598 ~~~-~~~p~~~~~~~ll~~-~~~~-g~~~~A~~~~~~~~~~ 635 (727)
++. ...|+......-+.. +... +.+++|..+|+++.+.
T Consensus 159 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 159 QRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp SGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 877 567765433333333 4444 6788999999988763
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.27 E-value=4.2e-06 Score=74.24 Aligned_cols=109 Identities=12% Similarity=0.029 Sum_probs=89.4
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHH
Q 004856 537 DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLS 614 (727)
Q Consensus 537 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~ 614 (727)
+...+..+...+...|++++|+..|++..+. .+.+...|..+..+|.+.|++++|+..+++. ...| +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4567888888999999999999999998865 2335778888999999999999999999887 4455 4567788888
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCCcchHHHHH
Q 004856 615 ACKMHSETELAELTAEKLISMEPENAGNYVLLS 647 (727)
Q Consensus 615 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 647 (727)
.+...|++++|+..++++++++|++...+....
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 899999999999999999999998888665544
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.26 E-value=8e-06 Score=72.42 Aligned_cols=95 Identities=15% Similarity=0.042 Sum_probs=82.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 004856 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASM 580 (727)
Q Consensus 502 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 580 (727)
+...|..+...+.+.|++++|++.|++.++. .| +...|..+..++...|++++|+..+++..+. .+.+...|..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 5667888889999999999999999999884 45 6778889999999999999999999999865 23347788899
Q ss_pred HHHHHhcCCHHHHHHHHHhC
Q 004856 581 VNLLGRAGHMDEARELVKDM 600 (727)
Q Consensus 581 i~~~~~~g~~~~A~~~~~~~ 600 (727)
..+|.+.|++++|.+.|++.
T Consensus 86 g~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHH
Confidence 99999999999999999887
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=1.2e-05 Score=66.25 Aligned_cols=97 Identities=10% Similarity=0.104 Sum_probs=86.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHH
Q 004856 573 SQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIY 650 (727)
Q Consensus 573 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 650 (727)
+...+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|.++..+..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3456778889999999999999999988 3344 5667888888899999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 004856 651 AAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 651 ~~~g~~~~a~~~~~~m~~~ 669 (727)
...|++++|.+.+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 9999999999999988765
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.26 E-value=1.3e-05 Score=70.84 Aligned_cols=127 Identities=15% Similarity=0.034 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 004856 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLL 584 (727)
Q Consensus 505 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 584 (727)
.|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+. .+.+...+..+...+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 44445555555566666666665555531 223455555555555666666666666555543 122344555555566
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHhhHHHHH--HHHHHcCCHHHHHHHHHHHHc
Q 004856 585 GRAGHMDEARELVKDM-PFKP-DARVWGPLL--SACKMHSETELAELTAEKLIS 634 (727)
Q Consensus 585 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll--~~~~~~g~~~~A~~~~~~~~~ 634 (727)
.+.|++++|.+.++++ ...| +...+..+. ..+...|++++|...+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 6666666666666554 2222 222332222 224455666666666665543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=7.2e-06 Score=75.38 Aligned_cols=95 Identities=11% Similarity=-0.044 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHh
Q 004856 575 EHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAA 652 (727)
Q Consensus 575 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 652 (727)
..+..+..+|.+.|++++|...+++. ...| +...+..+..++...|++++|+..++++++++|++..++..+..++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 46666777777788888888777766 3334 455777777788999999999999999999999999999999999998
Q ss_pred cCChhHHH-HHHHHHHhC
Q 004856 653 AGKWNGVA-KMRTFLRDR 669 (727)
Q Consensus 653 ~g~~~~a~-~~~~~m~~~ 669 (727)
.|+.+++. ..+..+...
T Consensus 169 ~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHC------------
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 88888777 455555443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.5e-05 Score=68.96 Aligned_cols=101 Identities=12% Similarity=0.103 Sum_probs=72.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhH
Q 004856 501 KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD----LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEH 576 (727)
Q Consensus 501 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 576 (727)
.+...|..+...+...|++++|++.|++..+ ..|+ ...+..+..++...|++++|...++...+. .+.+...
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~ 101 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKA 101 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHH
Confidence 3566777777778888888888888888776 3465 566777777778888888888888877754 2234567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 004856 577 YASMVNLLGRAGHMDEARELVKDM-PFKPD 605 (727)
Q Consensus 577 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 605 (727)
+..+..+|...|++++|.+.+++. ...|+
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 131 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPK 131 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 777777888888888888888776 33443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.20 E-value=4.9e-06 Score=71.50 Aligned_cols=62 Identities=10% Similarity=-0.031 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHcc-------CCCCcchH----HHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 608 VWGPLLSACKMHSETELAELTAEKLISM-------EPENAGNY----VLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 608 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
.|..+..++...|++++|+..+++++++ +|++..+| ...+.++...|++++|+..+++..+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 6777777778888888888888888887 88888888 88888888888888888888877553
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.20 E-value=3.8e-05 Score=63.85 Aligned_cols=90 Identities=19% Similarity=0.270 Sum_probs=37.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 004856 475 AIFISYAKCGCIEMAGELFDEEKIDS-KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL 553 (727)
Q Consensus 475 ~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 553 (727)
.+...+...|++++|...|++..... .+...|..+...+...|++++|+..++++.+.. +.+..++..+...+...|+
T Consensus 14 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 92 (125)
T 1na0_A 14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGD 92 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcC
Confidence 33334444444444444444322111 133344444444444444444444444444421 1233344444444444444
Q ss_pred HHHHHHHHHHhH
Q 004856 554 VEEGRIIFKEMK 565 (727)
Q Consensus 554 ~~~a~~~~~~~~ 565 (727)
+++|...++++.
T Consensus 93 ~~~A~~~~~~~~ 104 (125)
T 1na0_A 93 YDEAIEYYQKAL 104 (125)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.19 E-value=1e-05 Score=71.60 Aligned_cols=63 Identities=14% Similarity=0.076 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 607 RVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 607 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
..|..+..++.+.|++++|+..++++++++|.++.+|..++.+|...|++++|...+++..+.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 456666677888888888888888888888888888888888888888888888888877665
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=0.0003 Score=69.14 Aligned_cols=181 Identities=12% Similarity=0.079 Sum_probs=111.7
Q ss_pred HHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC-HHHHHHHH
Q 004856 486 IEMAGELFDEEKID-SKDIITWNSMISAYAKHGD--WSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL-VEEGRIIF 561 (727)
Q Consensus 486 ~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-~~~a~~~~ 561 (727)
++++..+++.+... +.+..+|+.-.-.+.+.++ +++++++++++.+.. +-|...|+.-..++...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 34555555553322 3366777776666666663 677777777777743 2266677766666666676 57777777
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhc--------------CCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHc------
Q 004856 562 KEMKESYGYEPSQEHYASMVNLLGRA--------------GHMDEARELVKDM-PFKP-DARVWGPLLSACKMH------ 619 (727)
Q Consensus 562 ~~~~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~------ 619 (727)
..+.+. .+-|...|+.....+.+. +.++++++++.+. ...| |...|+-+-..+...
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 777764 233455565555554443 3467777777766 3344 556676555554444
Q ss_pred -----CCHHHHHHHHHHHHccCCCCcchHHHHHHHH---HhcCChhHHHHHHHHHHhC
Q 004856 620 -----SETELAELTAEKLISMEPENAGNYVLLSNIY---AAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 620 -----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~a~~~~~~m~~~ 669 (727)
+.++++++.++++++++|++...+..++... ...|..++....+.++.+-
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 3577888888888888887755554443322 2356667777777777654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.17 E-value=4.5e-05 Score=64.36 Aligned_cols=94 Identities=13% Similarity=0.092 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 004856 503 IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMV 581 (727)
Q Consensus 503 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 581 (727)
...|..+...+...|++++|++.|++..+. .| +...+..+..++...|++++|...++++.+. .+.+...+..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la 91 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCchHHHHHHH
Confidence 344444555555555555555555555442 22 3444455555555555555555555555432 122344445555
Q ss_pred HHHHhcCCHHHHHHHHHhC
Q 004856 582 NLLGRAGHMDEARELVKDM 600 (727)
Q Consensus 582 ~~~~~~g~~~~A~~~~~~~ 600 (727)
..+.+.|++++|.+.+++.
T Consensus 92 ~~~~~~~~~~~A~~~~~~~ 110 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKA 110 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHH
Confidence 5555555555555555544
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=0.0013 Score=64.96 Aligned_cols=233 Identities=12% Similarity=0.001 Sum_probs=155.8
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcCC-ChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhc-C-
Q 004856 409 GYVTHDQSLEALRLFSEMKLEGVEVDFV-TIINILPACVNIG-ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC-G- 484 (727)
Q Consensus 409 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g- 484 (727)
...+.+..++|+++++++... .|+.. .++.--..+...+ .++++..+++.+.... +.+..+++.-...+.+. +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCC
Confidence 334455556788888887764 45443 3344444445556 4778888887777655 44555565555555555 6
Q ss_pred CHHHHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC--
Q 004856 485 CIEMAGELFDEEKIDS-KDIITWNSMISAYAKHGDWS--------QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL-- 553 (727)
Q Consensus 485 ~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-- 553 (727)
+++++.++++++.... .|..+|+--.-.+.+.|+++ ++++.++++++.. .-|...|+.....+.+.+.
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccc
Confidence 7889999998866544 47788887766666666666 8999999999854 3377888888888877775
Q ss_pred -----HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH--------------------HHHHHHHHhC-CC-----
Q 004856 554 -----VEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHM--------------------DEARELVKDM-PF----- 602 (727)
Q Consensus 554 -----~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~~-~~----- 602 (727)
++++++.++++... .+-|...|+.+-..+.+.|+. .+..++..++ ..
T Consensus 219 ~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED 296 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred cchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence 78899998888864 234566777777777776653 3444555554 11
Q ss_pred --CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH-ccCCCCcchHHHHH
Q 004856 603 --KPDARVWGPLLSACKMHSETELAELTAEKLI-SMEPENAGNYVLLS 647 (727)
Q Consensus 603 --~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~l~ 647 (727)
.+....+..+...|...|+.++|..+++.+. +.+|-....+...+
T Consensus 297 ~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 297 TPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 2466678888888999999999999999987 57885554444433
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.15 E-value=1.5e-05 Score=67.12 Aligned_cols=104 Identities=13% Similarity=0.103 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCh-hHHHHHH
Q 004856 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQ-EHYASMV 581 (727)
Q Consensus 504 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li 581 (727)
..+..+...+.+.|++++|++.|++.++ +.| +...|..+..+|...|++++|+..+++..+. .|+. ..+..+.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a 83 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV---GRETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh---CcccchhhHHHH
Confidence 3555666666666666666666666666 334 3555666666666666666666666665532 1110 0111111
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 004856 582 NLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEP 637 (727)
Q Consensus 582 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 637 (727)
.+|..+...+...|++++|+..++++++..|
T Consensus 84 -------------------------~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 84 -------------------------KAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp -------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred -------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 1334444556667777777777777776665
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.4e-05 Score=67.34 Aligned_cols=89 Identities=19% Similarity=0.156 Sum_probs=46.2
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCCCH----hhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---cchHHHHHHHHHh
Q 004856 581 VNLLGRAGHMDEARELVKDM-PFKPDA----RVWGPLLSACKMHSETELAELTAEKLISMEPEN---AGNYVLLSNIYAA 652 (727)
Q Consensus 581 i~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~ 652 (727)
...+.+.|++++|.+.+++. ...|+. ..+..+...+...|++++|+..++++++..|++ +.++..++.+|..
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~ 88 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG 88 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH
Confidence 34444455555555555444 112221 234444444555566666666666666655555 4445556666666
Q ss_pred cCChhHHHHHHHHHHhC
Q 004856 653 AGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 653 ~g~~~~a~~~~~~m~~~ 669 (727)
.|++++|...++.+.+.
T Consensus 89 ~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 89 EGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 66666666666555443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.13 E-value=2.9e-05 Score=82.06 Aligned_cols=116 Identities=9% Similarity=0.055 Sum_probs=70.4
Q ss_pred HHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHH
Q 004856 478 ISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVE 555 (727)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~ 555 (727)
..|.+.|++++|.+.|++.....| +...|..+..+|.+.|++++|++.+++..+. .| +...+..+..++...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Confidence 345667777777777776433233 4667777777777777777777777777763 34 4566667777777777777
Q ss_pred HHHHHHHHhHHhcCCCCC-hhHHHHHHHH--HHhcCCHHHHHHHHH
Q 004856 556 EGRIIFKEMKESYGYEPS-QEHYASMVNL--LGRAGHMDEARELVK 598 (727)
Q Consensus 556 ~a~~~~~~~~~~~~~~p~-~~~~~~li~~--~~~~g~~~~A~~~~~ 598 (727)
+|.+.++++.+. .|+ ...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777776654 222 3344444444 666667777776666
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.12 E-value=2.2e-05 Score=66.85 Aligned_cols=99 Identities=7% Similarity=-0.100 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHH
Q 004856 538 LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSA 615 (727)
Q Consensus 538 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~ 615 (727)
...+..+...+...|++++|...|+..... .+.+...+..+..++...|++++|...+++. ...| +...|..+...
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 444445555555555555555555554433 1222444555555555555555555555544 2223 33455555555
Q ss_pred HHHcCCHHHHHHHHHHHHccCCC
Q 004856 616 CKMHSETELAELTAEKLISMEPE 638 (727)
Q Consensus 616 ~~~~g~~~~A~~~~~~~~~~~p~ 638 (727)
+...|++++|+..+++++++.|+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHChh
Confidence 66666777777777777666654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.11 E-value=2.4e-05 Score=82.34 Aligned_cols=144 Identities=13% Similarity=0.066 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 004856 503 IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582 (727)
Q Consensus 503 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 582 (727)
...|..+...|.+.|++++|+..|++.++. .|+...+ . -+... .... -....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~----~~~~-----~~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESK----ASES-----FLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHH----HHHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHH----HHHH-----HHHHHHHHHHH
Confidence 446666777777777777777777777662 2322100 0 00000 0000 01356677778
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHH
Q 004856 583 LLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVA 660 (727)
Q Consensus 583 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 660 (727)
+|.+.|++++|+..++++ ...| +...|..+..++...|++++|+..++++++++|++..++..++.++...|+++++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888776 3344 45677788888999999999999999999999999999999999999999998876
Q ss_pred H-HHHHHHh
Q 004856 661 K-MRTFLRD 668 (727)
Q Consensus 661 ~-~~~~m~~ 668 (727)
+ .++.|..
T Consensus 406 ~~~~~~~f~ 414 (457)
T 1kt0_A 406 RRIYANMFK 414 (457)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHh
Confidence 5 4555543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.10 E-value=4.1e-05 Score=64.23 Aligned_cols=113 Identities=11% Similarity=-0.014 Sum_probs=51.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 004856 473 NTAIFISYAKCGCIEMAGELFDEEKIDS-KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNA 551 (727)
Q Consensus 473 ~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 551 (727)
+..+...+...|++++|...|++..... .+...|..+...+...|++++|++.+++..+.. +.+...+..+..++...
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 93 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSL 93 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHh
Confidence 3334444444455555555544422112 234444555555555555555555555555421 11344444555555555
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 004856 552 GLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG 588 (727)
Q Consensus 552 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 588 (727)
|++++|...++...+. .+.+...+..+..++.+.|
T Consensus 94 ~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 94 NKHVEAVAYYKKALEL--DPDNETYKSNLKIAELKLR 128 (131)
T ss_dssp TCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHh
Confidence 5555555555555433 1112334444444444443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=0.0007 Score=66.53 Aligned_cols=194 Identities=9% Similarity=-0.014 Sum_probs=131.9
Q ss_pred hHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcC--CHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCC-hHHHHHHH
Q 004856 451 LEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCG--CIEMAGELFDEEKID-SKDIITWNSMISAYAKHGD-WSQCFKLY 526 (727)
Q Consensus 451 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~-~~~A~~~~ 526 (727)
++++..+++.+.... +.+..+++.-.-.+.+.| .++++..+++.+... ..|..+|+--.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 455666666666544 344555555445555666 478888888875543 4478888888777788888 58999999
Q ss_pred HHHHHCCCCCChHHHHHHHHHHHhc--------------CCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc-----
Q 004856 527 TQMKQSDVRPDLITFLGLLTACVNA--------------GLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA----- 587 (727)
Q Consensus 527 ~~m~~~g~~p~~~t~~~ll~~~~~~--------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~----- 587 (727)
+++++.. +-|...|+.....+.+. +.++++++.+...... .+-|...|+-+-..+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccc
Confidence 9999853 23677777766666555 4578888888888864 233455666555555554
Q ss_pred ------CCHHHHHHHHHhC-CCCCCHhhHHHHHHHH-----HHcCCHHHHHHHHHHHHccCCCCcchHHHHHHH
Q 004856 588 ------GHMDEARELVKDM-PFKPDARVWGPLLSAC-----KMHSETELAELTAEKLISMEPENAGNYVLLSNI 649 (727)
Q Consensus 588 ------g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~-----~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 649 (727)
+.++++++.++++ ...||. .|..+-.++ ...|..++....+.++++++|....-|..+..-
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 4578888888888 566765 565433332 246778899999999999999777776665443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00011 Score=79.24 Aligned_cols=171 Identities=8% Similarity=-0.055 Sum_probs=138.8
Q ss_pred CCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhc
Q 004856 484 GCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGD----------WSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNA 551 (727)
Q Consensus 484 g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~ 551 (727)
..-++|.+.++.+....| +...|+.--..+...|+ ++++++.++++.+. .| +..+|..-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 344667787777544455 56788887777777777 89999999999984 45 678898888888999
Q ss_pred C--CHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC-CHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHc-------
Q 004856 552 G--LVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG-HMDEARELVKDM-PFKP-DARVWGPLLSACKMH------- 619 (727)
Q Consensus 552 g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~------- 619 (727)
+ ++++++..++++.+. -+-+...|+.-..++.+.| .++++.+.++++ ...| +...|+.....+...
T Consensus 121 ~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 9 779999999999975 2345778888888888888 899999999988 5556 667888888776553
Q ss_pred -------CCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhH
Q 004856 620 -------SETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNG 658 (727)
Q Consensus 620 -------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 658 (727)
+.++++.+.+++++..+|++..+|..+..++.+.|+.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999988655
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.05 E-value=2e-05 Score=66.32 Aligned_cols=106 Identities=10% Similarity=0.031 Sum_probs=50.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC----CCC----HhhHHHH
Q 004856 542 LGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PF----KPD----ARVWGPL 612 (727)
Q Consensus 542 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~~l 612 (727)
..+...+...|++++|...++..... .+.+...+..+...|...|++++|...++++ .. .++ ...|..+
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 33334444444444444444444332 1122333444444444444444444444433 11 111 3345555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHH
Q 004856 613 LSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIY 650 (727)
Q Consensus 613 l~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 650 (727)
...+...|++++|...++++++..| ++.....+..+.
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 5566677777777777777777666 455555554443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.04 E-value=4.1e-05 Score=76.88 Aligned_cols=86 Identities=9% Similarity=-0.001 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 004856 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582 (727)
Q Consensus 504 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 582 (727)
..|..+..+|.+.|++++|+..+++.++. .| +...|..+..++...|++++|+..|+++.+. .+.+...+..+..
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~ 272 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAV 272 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 44555555555555555555555555542 23 3444555555555555555555555555432 1112334444444
Q ss_pred HHHhcCCHHHH
Q 004856 583 LLGRAGHMDEA 593 (727)
Q Consensus 583 ~~~~~g~~~~A 593 (727)
++.+.|+.++|
T Consensus 273 ~~~~~~~~~~a 283 (336)
T 1p5q_A 273 CQQRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444444
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=2.3e-05 Score=65.21 Aligned_cols=96 Identities=11% Similarity=0.085 Sum_probs=51.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHc
Q 004856 542 LGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMH 619 (727)
Q Consensus 542 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~ 619 (727)
..+...+...|++++|...++...+. -+.+...|..+..++.+.|++++|+..+++. ...| +...|..+...+...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 33444555556666666666555543 1223445555555556666666666665555 3334 334555555556666
Q ss_pred CCHHHHHHHHHHHHccCCCC
Q 004856 620 SETELAELTAEKLISMEPEN 639 (727)
Q Consensus 620 g~~~~A~~~~~~~~~~~p~~ 639 (727)
|++++|+..++++++.+|++
T Consensus 99 g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHHHHhCcCC
Confidence 77777777777777766654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.03 E-value=2.7e-05 Score=63.31 Aligned_cols=97 Identities=12% Similarity=0.061 Sum_probs=46.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHhhHHHHHHHH
Q 004856 541 FLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP---DARVWGPLLSAC 616 (727)
Q Consensus 541 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~ 616 (727)
+..+...+...|++++|...+++..+. .+.+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 334444444444444444444444432 1122334444444455555555555554444 2222 234444455555
Q ss_pred HHc-CCHHHHHHHHHHHHccCCCC
Q 004856 617 KMH-SETELAELTAEKLISMEPEN 639 (727)
Q Consensus 617 ~~~-g~~~~A~~~~~~~~~~~p~~ 639 (727)
... |++++|++.++++++..|.+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHhCCHHHHHHHHHHHhhcccCC
Confidence 555 66666666666666655543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.02 E-value=1e-05 Score=85.58 Aligned_cols=115 Identities=8% Similarity=-0.031 Sum_probs=70.4
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHH
Q 004856 548 CVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELA 625 (727)
Q Consensus 548 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A 625 (727)
+...|++++|.+.+++..+. .+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 34455666666666665543 1223455566666666666666666666655 3334 344566666667777777777
Q ss_pred HHHHHHHHccCCCCcchHHHHHHH--HHhcCChhHHHHHHH
Q 004856 626 ELTAEKLISMEPENAGNYVLLSNI--YAAAGKWNGVAKMRT 664 (727)
Q Consensus 626 ~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 664 (727)
+..++++++++|++..++..++.+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777777777777777777766 777777777777766
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.02 E-value=6.5e-05 Score=63.08 Aligned_cols=102 Identities=13% Similarity=0.069 Sum_probs=60.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCCh---hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HhhHHHHHHH
Q 004856 544 LLTACVNAGLVEEGRIIFKEMKESYGYEPSQ---EHYASMVNLLGRAGHMDEARELVKDM-PFKPD----ARVWGPLLSA 615 (727)
Q Consensus 544 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~ 615 (727)
+...+...|++++|...|+.+.+.. +.+. ..+..+...+.+.|++++|...+++. ...|+ ...+..+...
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 4445555666666666666665431 1112 35555666666666666666666655 22232 3345556666
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCCcchHHHHH
Q 004856 616 CKMHSETELAELTAEKLISMEPENAGNYVLLS 647 (727)
Q Consensus 616 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 647 (727)
+...|++++|+..++++++..|+++.+.....
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARVAQE 117 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 77788888888888888888886665544433
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.01 E-value=3.1e-05 Score=78.81 Aligned_cols=138 Identities=12% Similarity=0.072 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHH
Q 004856 503 IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP-SQEHYASMV 581 (727)
Q Consensus 503 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li 581 (727)
...|..+...+.+.|++++|++.|++.++. .|+.. .....+ ... ...| +...|..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~-------~~~---~~~~~~~~~~~nla 280 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDA-------DGA---KLQPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHH-------HHG---GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChH-------HHH---HHHHHHHHHHHHHH
Confidence 345666777777778888888777776651 11100 000111 111 1122 355788888
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHH
Q 004856 582 NLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGV 659 (727)
Q Consensus 582 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 659 (727)
.+|.+.|++++|++.++++ ...| +...|..+..++...|++++|+..++++++++|++...+..+..++...++.+++
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999887 5566 4567777888899999999999999999999999999999999999988888777
Q ss_pred HHH
Q 004856 660 AKM 662 (727)
Q Consensus 660 ~~~ 662 (727)
.+.
T Consensus 361 ~k~ 363 (370)
T 1ihg_A 361 EKA 363 (370)
T ss_dssp HHC
T ss_pred HHH
Confidence 653
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.01 E-value=1.2e-05 Score=69.16 Aligned_cols=71 Identities=18% Similarity=0.132 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-C-------CCCCH-hhH----HHHHHHHHHcCCHHHHHHHHHHHHccCCCCcch
Q 004856 576 HYASMVNLLGRAGHMDEARELVKDM-P-------FKPDA-RVW----GPLLSACKMHSETELAELTAEKLISMEPENAGN 642 (727)
Q Consensus 576 ~~~~li~~~~~~g~~~~A~~~~~~~-~-------~~p~~-~~~----~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 642 (727)
.|..+..++.+.|++++|+..+++. . +.|+. ..| .....++...|++++|+..|+++++++|+|...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5555666666666666666655554 3 37765 477 788888999999999999999999999988766
Q ss_pred HHHH
Q 004856 643 YVLL 646 (727)
Q Consensus 643 ~~~l 646 (727)
+.-+
T Consensus 139 ~~~~ 142 (159)
T 2hr2_A 139 TPGK 142 (159)
T ss_dssp CTTH
T ss_pred HHHH
Confidence 5433
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.98 E-value=2.4e-05 Score=68.68 Aligned_cols=61 Identities=15% Similarity=0.064 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHccCC------CCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004856 608 VWGPLLSACKMHSETELAELTAEKLISMEP------ENAGNYVLLSNIYAAAGKWNGVAKMRTFLRD 668 (727)
Q Consensus 608 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 668 (727)
.+..+...+...|++++|...++++++..+ .....+..++.+|...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344445556666777777777776665421 1134566778888888888888888877654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.97 E-value=6.4e-06 Score=68.20 Aligned_cols=81 Identities=15% Similarity=0.093 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHhC-CC---CCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHH
Q 004856 588 GHMDEARELVKDM-PF---KPD-ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKM 662 (727)
Q Consensus 588 g~~~~A~~~~~~~-~~---~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 662 (727)
|++++|+..|++. .. .|+ ...|..+...+...|++++|+..++++++.+|+++.++..++.+|...|++++|...
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 4445555555544 22 132 234444445555666666666666666666666666666666666666666666666
Q ss_pred HHHHHh
Q 004856 663 RTFLRD 668 (727)
Q Consensus 663 ~~~m~~ 668 (727)
+++..+
T Consensus 84 ~~~al~ 89 (117)
T 3k9i_A 84 LLKIIA 89 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.96 E-value=4.8e-05 Score=79.66 Aligned_cols=189 Identities=6% Similarity=-0.096 Sum_probs=122.9
Q ss_pred HHhcCCHHHHHHHHHhccCCCCC------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCh--
Q 004856 480 YAKCGCIEMAGELFDEEKIDSKD------------------IITWNSMISAYAKHGDWSQCFKLYTQMKQSD-VRPDL-- 538 (727)
Q Consensus 480 ~~~~g~~~~A~~~~~~~~~~~~~------------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-- 538 (727)
+.+.|++++|.+.|.++....|+ ..++..+...|...|++++|.+.+.++...- ..++.
T Consensus 14 l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 93 (434)
T 4b4t_Q 14 LVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKT 93 (434)
T ss_dssp HHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHH
Confidence 45667777777777653221111 1246677888888888888888888776521 11122
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHhHHhc---CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-----C--CCCC
Q 004856 539 --ITFLGLLTACVNAGLVEEGRIIFKEMKESY---GYEPS-QEHYASMVNLLGRAGHMDEARELVKDM-----P--FKPD 605 (727)
Q Consensus 539 --~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-----~--~~p~ 605 (727)
...+.+...+...|.++.+..+++...... +..+. ..++..|...|...|++++|..++++. . .+|.
T Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 173 (434)
T 4b4t_Q 94 VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPS 173 (434)
T ss_dssp HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchh
Confidence 123333334445678888888887765321 22233 456778888889999999998888766 1 1222
Q ss_pred -HhhHHHHHHHHHHcCCHHHHHHHHHHHHccC---CCC----cchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004856 606 -ARVWGPLLSACKMHSETELAELTAEKLISME---PEN----AGNYVLLSNIYAAAGKWNGVAKMRTFLRD 668 (727)
Q Consensus 606 -~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 668 (727)
..++..++..|...|++++|...+++++... +.+ ...+..++..+...|++++|...+....+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 174 LVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2366667777899999999999999888643 221 23455677788888999998888776643
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00011 Score=67.45 Aligned_cols=63 Identities=11% Similarity=-0.050 Sum_probs=58.3
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 607 RVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 607 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
..|..+...+...|++++|+..++++++++|++..++..++.+|...|++++|.+.+++..+.
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 567777778999999999999999999999999999999999999999999999999988765
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.96 E-value=2.6e-05 Score=65.52 Aligned_cols=96 Identities=15% Similarity=0.093 Sum_probs=83.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-------cchHH
Q 004856 574 QEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPEN-------AGNYV 644 (727)
Q Consensus 574 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~ 644 (727)
...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++++..|.+ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456778889999999999999999987 3334 56677788888999999999999999999988766 77889
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 645 LLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 645 ~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
.++.+|...|++++|.+.+++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999988775
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.91 E-value=2.6e-05 Score=68.89 Aligned_cols=76 Identities=17% Similarity=0.081 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCc-chHHHHHHH
Q 004856 574 QEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENA-GNYVLLSNI 649 (727)
Q Consensus 574 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~ 649 (727)
...|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++++|+++ .....+..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 346777777788888888888877776 3444 455777777788899999999999999999999877 444444433
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00058 Score=71.27 Aligned_cols=195 Identities=9% Similarity=-0.007 Sum_probs=92.6
Q ss_pred HHHHhcCCHHHHHHHHhcCCCC-----Ch---------------hHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCH
Q 004856 377 DMYCECEDLNCARKIFDSVKTK-----TV---------------VSWSSMIKGYVTHDQSLEALRLFSEMKLEG-VEVDF 435 (727)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~~~~~-----~~---------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~ 435 (727)
..+.+.|++++|.+.|..+.+. +. .++..+...|...|++++|.+.+.+....- ..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 4456677888887777665421 00 135566777777777777777776665421 11111
Q ss_pred H---HHHHHH-HHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHH
Q 004856 436 V---TIINIL-PACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMIS 511 (727)
Q Consensus 436 ~---t~~~ll-~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~ 511 (727)
. .....+ ..+...|+.+.+..++...... .........-..++..+..
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~la~ 143 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEF----------------------------AKREKRVFLKHSLSIKLAT 143 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHH----------------------------HHHSSCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----------------------------HHHhCccHHHHHHHHHHHH
Confidence 1 111111 2223344555555544433321 0001100111234455555
Q ss_pred HHHHcCChHHHHHHHHHHHHC--CC--CCC-hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc---CCCCC--hhHHHHHH
Q 004856 512 AYAKHGDWSQCFKLYTQMKQS--DV--RPD-LITFLGLLTACVNAGLVEEGRIIFKEMKESY---GYEPS--QEHYASMV 581 (727)
Q Consensus 512 ~~~~~g~~~~A~~~~~~m~~~--g~--~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~li 581 (727)
.|...|++++|..++++.... +. +|. ..++..++..|...|++++|..+++...... +.++. ...+..+.
T Consensus 144 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g 223 (434)
T 4b4t_Q 144 LHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSG 223 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHH
Confidence 566666666666665554431 11 111 2345555666666666666666665544321 11111 22344555
Q ss_pred HHHHhcCCHHHHHHHHHh
Q 004856 582 NLLGRAGHMDEARELVKD 599 (727)
Q Consensus 582 ~~~~~~g~~~~A~~~~~~ 599 (727)
..+...|++++|...+.+
T Consensus 224 ~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 224 ILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp HHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHH
Confidence 555566666666555443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.87 E-value=7.6e-05 Score=65.35 Aligned_cols=132 Identities=14% Similarity=0.043 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----hh
Q 004856 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVR-PD----LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS----QE 575 (727)
Q Consensus 505 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 575 (727)
++..+...|...|++++|+..+++..+..-. ++ ..++..+...+...|++++|...+++..+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555556666666666666666665542100 11 135666666677777777777777765543111111 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-------CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 004856 576 HYASMVNLLGRAGHMDEARELVKDM-------PFKP-DARVWGPLLSACKMHSETELAELTAEKLISME 636 (727)
Q Consensus 576 ~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 636 (727)
.+..+...+...|++++|.+.+++. +..+ ....+..+...+...|++++|...+++++++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5666677777777777777777655 1111 12345555666788888888888888877643
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.87 E-value=9.2e-05 Score=77.69 Aligned_cols=123 Identities=11% Similarity=-0.005 Sum_probs=81.7
Q ss_pred HHhcCCHHHHHHHHHHhHHhc--CCCC---C-hhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCH-hhHHH
Q 004856 548 CVNAGLVEEGRIIFKEMKESY--GYEP---S-QEHYASMVNLLGRAGHMDEARELVKDM---------PFKPDA-RVWGP 611 (727)
Q Consensus 548 ~~~~g~~~~a~~~~~~~~~~~--~~~p---~-~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~ 611 (727)
+...|++++|+.++++..+.. -+.| + ..+++.|..+|...|++++|+.++++. +..|+. .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 334566666666665554321 1111 1 335666666666666666666666554 233443 36677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHc-----cCCCCcch---HHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004856 612 LLSACKMHSETELAELTAEKLIS-----MEPENAGN---YVLLSNIYAAAGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 612 ll~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 670 (727)
|...|..+|++++|+.+++++++ +.|+++.+ ...+..++...|++++|..+++++++..
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888888888888888876 46776654 4477788889999999999999998754
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.86 E-value=4.8e-05 Score=76.45 Aligned_cols=145 Identities=10% Similarity=-0.027 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 004856 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLL 584 (727)
Q Consensus 505 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 584 (727)
.|..+...+.+.|++++|+..|++.+. +.|+... +...++.+++...+ . ...|..+..+|
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~~~ 240 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHHHH
Confidence 455566666677777777777777766 3454331 11222222222111 1 12455666666
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHH-HHhcCChhHHHH
Q 004856 585 GRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNI-YAAAGKWNGVAK 661 (727)
Q Consensus 585 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~a~~ 661 (727)
.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++++|++..++..+..+ ....+..+++..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777666666665 3334 344566666667777777777777777777777766666666665 333455556666
Q ss_pred HHHHHHhC
Q 004856 662 MRTFLRDR 669 (727)
Q Consensus 662 ~~~~m~~~ 669 (727)
.++.|...
T Consensus 321 ~~~~~l~~ 328 (338)
T 2if4_A 321 MYKGIFKG 328 (338)
T ss_dssp --------
T ss_pred HHHHhhCC
Confidence 66665443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.85 E-value=1e-05 Score=66.92 Aligned_cols=90 Identities=13% Similarity=0.081 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHhHHhcCC-CC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHH
Q 004856 552 GLVEEGRIIFKEMKESYGY-EP-SQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAEL 627 (727)
Q Consensus 552 g~~~~a~~~~~~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~ 627 (727)
|++++|+..|++..+. +. .| +...+..+..+|.+.|++++|.+.+++. ...| +...+..+..++...|++++|+.
T Consensus 4 g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 4455555555555432 10 12 2334555555555556666665555554 2233 33455555555667777777777
Q ss_pred HHHHHHccCCCCcch
Q 004856 628 TAEKLISMEPENAGN 642 (727)
Q Consensus 628 ~~~~~~~~~p~~~~~ 642 (727)
.++++++..|+++..
T Consensus 83 ~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 83 LLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHCCCHHH
T ss_pred HHHHHHHhCCCcHHH
Confidence 777777776765544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.84 E-value=3e-05 Score=77.95 Aligned_cols=114 Identities=9% Similarity=-0.089 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHH
Q 004856 539 ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKM 618 (727)
Q Consensus 539 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~ 618 (727)
..+..+...+.+.|++++|...|++.... .|+... +...|+.+++...+. ...|..+..++.+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l~-------~~~~~nla~~~~~ 242 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAVK-------NPCHLNIAACLIK 242 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHHH-------THHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 34666777888889999999999988754 344321 233445555554432 1367778888999
Q ss_pred cCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 619 HSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 619 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
.|++++|+..++++++++|++..++..++.+|...|++++|...+++..+.
T Consensus 243 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 243 LKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp TTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00014 Score=73.92 Aligned_cols=113 Identities=6% Similarity=-0.033 Sum_probs=86.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHhhHHHHHHHH
Q 004856 538 LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKP-DARVWGPLLSAC 616 (727)
Q Consensus 538 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~ 616 (727)
...+..+...+.+.|++++|+..|++..+. .++.. .....+++. ...| +...|..+..++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~---~~~~~----------~~~~~~~~~------~~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY---VEGSR----------AAAEDADGA------KLQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHHH----------HHSCHHHHG------GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hhcCc----------cccChHHHH------HHHHHHHHHHHHHHHHH
Confidence 445777788888888999998888887753 11100 001111111 1223 345777788889
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 617 KMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 617 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
.+.|++++|+..++++++++|+++.++..++.+|...|++++|...+++..+.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999988765
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0001 Score=77.46 Aligned_cols=113 Identities=9% Similarity=-0.033 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 004856 538 LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACK 617 (727)
Q Consensus 538 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~ 617 (727)
...+..+...+.+.|++++|...|+++.+...-.++.. -++..+ ... -....|..+..++.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~--------------~~~~~~-~~~----~~~~~~~nla~~~~ 328 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLS--------------EKESKA-SES----FLLAAFLNLAMCYL 328 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC--------------HHHHHH-HHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCC--------------hHHHHH-HHH----HHHHHHHHHHHHHH
Confidence 45677777777788888888888877775311111100 001000 000 01357777888899
Q ss_pred HcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 618 MHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 618 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
+.|++++|+..++++++++|++..+|..++.+|...|++++|+..+++..+.
T Consensus 329 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 329 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998776
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.74 E-value=6.3e-05 Score=61.14 Aligned_cols=92 Identities=14% Similarity=-0.021 Sum_probs=73.1
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC------cchHH
Q 004856 573 SQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPEN------AGNYV 644 (727)
Q Consensus 573 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~ 644 (727)
+...+..+...+.+.|++++|.+.+++. ...| +...|..+..++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4556777788888888888888888877 3344 55677777788999999999999999999999988 67778
Q ss_pred HHHHHHHhcCChhHHHHHHH
Q 004856 645 LLSNIYAAAGKWNGVAKMRT 664 (727)
Q Consensus 645 ~l~~~~~~~g~~~~a~~~~~ 664 (727)
.++.++...|++++|.+.++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 88888888888777665544
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00016 Score=57.55 Aligned_cols=65 Identities=17% Similarity=0.184 Sum_probs=55.5
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 605 DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 605 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
+...|..+...+...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45577777778888999999999999999999988899999999999999999999988876554
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00017 Score=55.87 Aligned_cols=81 Identities=25% Similarity=0.303 Sum_probs=61.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHH
Q 004856 574 QEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYA 651 (727)
Q Consensus 574 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 651 (727)
...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|+..++++++++|.++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345666677777777777777777766 2333 45567777777888999999999999999999988888888888877
Q ss_pred hcC
Q 004856 652 AAG 654 (727)
Q Consensus 652 ~~g 654 (727)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00011 Score=60.19 Aligned_cols=77 Identities=12% Similarity=0.069 Sum_probs=56.7
Q ss_pred HHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 593 ARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 593 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
|.+.+++. ...| +...|..+...+...|++++|+..++++++++|++..++..++.+|...|++++|...+++..+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44445444 3344 44566667777888888888888888888888888888888888888888888888888876554
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00017 Score=75.73 Aligned_cols=114 Identities=15% Similarity=-0.010 Sum_probs=87.4
Q ss_pred HHHhcCCHHHHHHHHHhC---------CCCCCH-hhHHHHHHHHHHcCCHHHHHHHHHHHHc-----cCCCCc---chHH
Q 004856 583 LLGRAGHMDEARELVKDM---------PFKPDA-RVWGPLLSACKMHSETELAELTAEKLIS-----MEPENA---GNYV 644 (727)
Q Consensus 583 ~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~p~~~---~~~~ 644 (727)
.+...|++++|+.++++. +..|+. .+++.|..+|...|++++|+.+++++++ +.|+++ .++.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455789999999988776 233443 4788888889999999999999999987 456555 4677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCcChHHHHHHHHHH-HHHHH
Q 004856 645 LLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL-ELEIM 714 (727)
Q Consensus 645 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~f~~~d~~hp~~~~i~~~l~~l-~~~~~ 714 (727)
.|+.+|..+|++++|..++++..+-..+ .-...||.+.++...+.+. .++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLV------------------THGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH------------------HhCCCChHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999987653210 1124699999999888887 44433
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.56 E-value=3.5e-05 Score=66.04 Aligned_cols=49 Identities=12% Similarity=0.152 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHccCCCCcchHHHHHHHHHhcC-----------ChhHHHHHHHHHHhCC
Q 004856 622 TELAELTAEKLISMEPENAGNYVLLSNIYAAAG-----------KWNGVAKMRTFLRDRG 670 (727)
Q Consensus 622 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~m~~~~ 670 (727)
+++|+..|+++++++|++..+|..++.+|...| ++++|++.|++..+..
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 679999999999999999999999999999875 8999999999887763
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0016 Score=70.15 Aligned_cols=148 Identities=11% Similarity=-0.011 Sum_probs=122.4
Q ss_pred CChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCC----------HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 004856 517 GDWSQCFKLYTQMKQSDVRPD-LITFLGLLTACVNAGL----------VEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585 (727)
Q Consensus 517 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 585 (727)
...++|++.++++.+ +.|+ ...|+.--.++...|+ +++++..++.+.+. .+-+...|..-..++.
T Consensus 43 ~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 345788999999998 5675 5667777777777777 99999999999975 3445778888888888
Q ss_pred hcC--CHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcC-CHHHHHHHHHHHHccCCCCcchHHHHHHHHHhc-------
Q 004856 586 RAG--HMDEARELVKDM-PFKP-DARVWGPLLSACKMHS-ETELAELTAEKLISMEPENAGNYVLLSNIYAAA------- 653 (727)
Q Consensus 586 ~~g--~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 653 (727)
+.| ++++++++++++ ...| +...|+.-...+...| .++++.+.++++++.+|.|..+|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 999 779999999998 4445 6778999888888889 899999999999999999999999999998874
Q ss_pred -------CChhHHHHHHHHHHh
Q 004856 654 -------GKWNGVAKMRTFLRD 668 (727)
Q Consensus 654 -------g~~~~a~~~~~~m~~ 668 (727)
+.++++.+++++...
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHh
Confidence 556888888877654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.48 E-value=0.001 Score=56.46 Aligned_cols=89 Identities=8% Similarity=-0.095 Sum_probs=49.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHh---
Q 004856 580 MVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKM----HSETELAELTAEKLISMEPENAGNYVLLSNIYAA--- 652 (727)
Q Consensus 580 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 652 (727)
|...|...+..++|.++|++.-...+...+..|...|.. .+|.++|...++++.+. .++.++..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 444444444455555555544212334444444444444 55666666666666654 345666666666666
Q ss_pred -cCChhHHHHHHHHHHhCC
Q 004856 653 -AGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 653 -~g~~~~a~~~~~~m~~~~ 670 (727)
.++.++|.+++++..+.|
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHCC
Confidence 666666666666666554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00045 Score=71.32 Aligned_cols=112 Identities=10% Similarity=0.040 Sum_probs=77.4
Q ss_pred HHhcCCHHHHHHHHHhC---------CCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHc-----cCCCCc---chHHH
Q 004856 584 LGRAGHMDEARELVKDM---------PFKPD-ARVWGPLLSACKMHSETELAELTAEKLIS-----MEPENA---GNYVL 645 (727)
Q Consensus 584 ~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~p~~~---~~~~~ 645 (727)
+.+.|++++|++++++. +..|+ ..+++.+..+|...|++++|+.+++++++ +.|+++ ..+..
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 34455666666555544 11122 23667777778888888888888888876 345554 46778
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCcChHHHHHHHHHH-HHHH
Q 004856 646 LSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL-ELEI 713 (727)
Q Consensus 646 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~f~~~d~~hp~~~~i~~~l~~l-~~~~ 713 (727)
|+.+|..+|++++|..++++..+--. + .-...||...+++..|.+. .+++
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~-~-----------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMR-V-----------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHH-H-----------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHH-H-----------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998765311 0 1234699999999888887 5554
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00032 Score=72.28 Aligned_cols=103 Identities=14% Similarity=0.022 Sum_probs=71.6
Q ss_pred CCHHHHHHHHHhC---------CCCCCH-hhHHHHHHHHHHcCCHHHHHHHHHHHHc-----cCCCCc---chHHHHHHH
Q 004856 588 GHMDEARELVKDM---------PFKPDA-RVWGPLLSACKMHSETELAELTAEKLIS-----MEPENA---GNYVLLSNI 649 (727)
Q Consensus 588 g~~~~A~~~~~~~---------~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~p~~~---~~~~~l~~~ 649 (727)
|++++|+.++++. +..|+. .+++.|..+|...|++++|+.+++++++ +.|+++ ..+..|+.+
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4555555555443 122333 3677777778888888888888888876 345554 467789999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCcChHHHHHHHHH
Q 004856 650 YAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGI 708 (727)
Q Consensus 650 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~f~~~d~~hp~~~~i~~~l~~ 708 (727)
|..+|++++|..++++..+-... .-...||.+.+++..|+.
T Consensus 392 ~~~qg~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~l~~~l~~ 432 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIAIMEV------------------AHGKDHPYISEIKQEIES 432 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTCHHHHHHHHHHHC
T ss_pred HHhccCHHHHHHHHHHHHHHHHH------------------HcCCCChHHHHHHHHHhc
Confidence 99999999999999987653210 123469999998887753
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.38 E-value=6.1e-06 Score=82.31 Aligned_cols=273 Identities=12% Similarity=0.042 Sum_probs=154.5
Q ss_pred ChhHHHHHHhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHH
Q 004856 80 LLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVK 159 (727)
Q Consensus 80 ~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 159 (727)
+++.|.+.-++..+|.+ |..|-++....+...+|++.|-+. -|+..|..+|.++.+.|.++.-...+....+
T Consensus 40 ~ldRa~eyA~~~n~p~V--Ws~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk 111 (624)
T 3lvg_A 40 NLDRAYEFAERCNEPAV--WSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARK 111 (624)
T ss_dssp CSTTTTTSSSSCCCCCC--SSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTST
T ss_pred ccHHHHHHHHHhCCccH--HHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 45555555455555554 777777777777777777665221 3555677777777777777766666654443
Q ss_pred HcCCCchhHHHHHHHhhhccCCCChhhhhhhccCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHH
Q 004856 160 LGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINL 239 (727)
Q Consensus 160 ~~~~~~~~~~~~li~~y~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 239 (727)
. ..++.+-+.|+-.|++. +++.+-+.. +..||+.--..+.+-|...|.++.|.-+|..+..
T Consensus 112 ~--~ke~~IDteLi~ayAk~--~rL~elEef--l~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN------------- 172 (624)
T 3lvg_A 112 K--ARESYVETELIFALAKT--NRLAELEEF--INGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN------------- 172 (624)
T ss_dssp T--CCSTTTTHHHHHHHHTS--CSSSTTTST--TSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-------------
T ss_pred H--hcccccHHHHHHHHHhh--CcHHHHHHH--HcCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-------------
Confidence 3 34556667888888888 766555444 2246666667777777777777777666654322
Q ss_pred HHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCCCCeehHHHHHHHHHhcCCchHHH
Q 004856 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL 319 (727)
Q Consensus 240 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 319 (727)
|..|...+.+.|++..|...-++ ..++.+|-.+-.+|...+.+.-|.
T Consensus 173 -------------------------------~akLAstLV~L~~yq~AVdaArK--Ans~ktWKeV~~ACvd~~EfrLAq 219 (624)
T 3lvg_A 173 -------------------------------FGRLASTLVHLGEYQAAVDGARK--ANSTRTWKEVCFACVDGKEFRLAQ 219 (624)
T ss_dssp -------------------------------CTTTSSSSSSCSGGGSSTTTTTT--CCSSCSHHHHTHHHHHSCTTTTTT
T ss_pred -------------------------------HHHHHHHHHHHHHHHHHHHHHHh--cCChhHHHHHHHHHhCchHHHHHH
Confidence 22333344445555444432222 135666777777777777666554
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCC-CCChhHHHHHHHHHHhcCCHHHHHHHHhcCC--
Q 004856 320 ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS-DYQVSVHNSLIDMYCECEDLNCARKIFDSVK-- 396 (727)
Q Consensus 320 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-- 396 (727)
-.--.+. +.|| .+..++..|-..|-+++-..+++..+ |+ ......++-|.-.|+|- +.++..+.++..-
T Consensus 220 icGLniI---vhad--eL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILYsKY-~PeKlmEHlklf~sr 291 (624)
T 3lvg_A 220 MCGLHIV---VHAD--ELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYSKF-KPQKMREHLELFWSR 291 (624)
T ss_dssp HHHHHHH---CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSS
T ss_pred Hhcchhc---ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Confidence 3332222 1122 12233444556666666665555443 22 23455666666666664 3333333333222
Q ss_pred --CC-------ChhHHHHHHHHHHhcCChHHHH
Q 004856 397 --TK-------TVVSWSSMIKGYVTHDQSLEAL 420 (727)
Q Consensus 397 --~~-------~~~~~~~li~~~~~~g~~~~A~ 420 (727)
-| ....|.-++-.|.+-.++|.|.
T Consensus 292 iNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 292 VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp SCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred ccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 11 2345777777777777777664
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00024 Score=57.53 Aligned_cols=94 Identities=12% Similarity=0.165 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-------
Q 004856 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS------- 573 (727)
Q Consensus 502 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~------- 573 (727)
+...|..+...+...|++++|++.|++..+. .| +...+..+..++...|++++|+..+++..+ +.|+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~ 77 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR---YTSTAEHVAIR 77 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCSSTTSHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCccHHHHH
Confidence 3456667777777888888888888887774 34 566777777888888888888888887774 3454
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 004856 574 QEHYASMVNLLGRAGHMDEARELVKDM 600 (727)
Q Consensus 574 ~~~~~~li~~~~~~g~~~~A~~~~~~~ 600 (727)
...+..+..++...|+.++|.+.++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 78 SKLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 344555555565556555555544443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00027 Score=60.47 Aligned_cols=101 Identities=16% Similarity=0.141 Sum_probs=61.7
Q ss_pred HHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCH----------HHHHHHHHHhHHhcCCCCC-hhHHHHHH
Q 004856 514 AKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLV----------EEGRIIFKEMKESYGYEPS-QEHYASMV 581 (727)
Q Consensus 514 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~----------~~a~~~~~~~~~~~~~~p~-~~~~~~li 581 (727)
.+.+++++|++.+++..+. .| +...|..+..++...+++ ++|+..|++..+. .|+ ...|..+.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l---dP~~~~A~~~LG 87 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---DPKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh---CcCcHHHHHHHH
Confidence 4555677777777777763 34 566666666666666554 3555555555532 343 34555555
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCc
Q 004856 582 NLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENA 640 (727)
Q Consensus 582 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (727)
.+|...|.+ .|+.. ...|++++|+..|+++++++|++.
T Consensus 88 ~ay~~lg~l------------~P~~~---------~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 88 NAYTSFAFL------------TPDET---------EAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHH------------CCCHH---------HHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHhccc------------Ccchh---------hhhccHHHHHHHHHHHHHhCCCCH
Confidence 555544432 23221 112689999999999999999764
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0011 Score=51.57 Aligned_cols=68 Identities=16% Similarity=0.127 Sum_probs=57.2
Q ss_pred CCHhhHHHHHHHHHHcCC---HHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004856 604 PDARVWGPLLSACKMHSE---TELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGL 671 (727)
Q Consensus 604 p~~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 671 (727)
++...+..+..++...++ .++|..+++++++++|++..+...++..+.+.|++++|+.+|+++.+...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 456677777777544444 79999999999999999999999999999999999999999999987744
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0025 Score=49.08 Aligned_cols=64 Identities=20% Similarity=0.258 Sum_probs=58.4
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 606 ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 606 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
...|..+...+...|++++|+..++++++..|+++.++..++.+|...|++++|...+++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4467777777999999999999999999999999999999999999999999999999988765
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0014 Score=53.50 Aligned_cols=77 Identities=10% Similarity=0.101 Sum_probs=50.5
Q ss_pred HHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 004856 489 AGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKE 566 (727)
Q Consensus 489 A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 566 (727)
|...|++.....| +...|..+...|...|++++|+..|++..+. .| +...|..+..++...|++++|...|+...+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444332233 5667777777777777777777777777763 34 456677777777777777777777777664
Q ss_pred h
Q 004856 567 S 567 (727)
Q Consensus 567 ~ 567 (727)
.
T Consensus 82 ~ 82 (115)
T 2kat_A 82 A 82 (115)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0059 Score=51.68 Aligned_cols=112 Identities=11% Similarity=-0.090 Sum_probs=85.5
Q ss_pred CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHH
Q 004856 517 GDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR----AGHMDE 592 (727)
Q Consensus 517 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 592 (727)
+++++|++.|++..+.| .|+.. |...|...+.+++|.++|++..+. -+...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788888888888877 44433 666677777888888888888765 356677778888877 788999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHccCC
Q 004856 593 ARELVKDMPFKPDARVWGPLLSACKM----HSETELAELTAEKLISMEP 637 (727)
Q Consensus 593 A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p 637 (727)
|.++|++.-..-+...+..|...|.. .+|.++|...++++.+...
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999887333466677777777777 7899999999999888753
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.011 Score=58.19 Aligned_cols=136 Identities=10% Similarity=-0.005 Sum_probs=75.1
Q ss_pred CCHHHHHHHHHHHH--HcC---ChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhc---C-----CHHHHHHHHHHhHH
Q 004856 501 KDIITWNSMISAYA--KHG---DWSQCFKLYTQMKQSDVRPD-LITFLGLLTACVNA---G-----LVEEGRIIFKEMKE 566 (727)
Q Consensus 501 ~~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~---g-----~~~~a~~~~~~~~~ 566 (727)
.+...|...+.+.. ..+ +..+|..+|++.++ +.|+ ...|..+..++... + ........++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 45666776665543 223 34788999999988 5676 45555554444310 0 01111111111111
Q ss_pred hcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004856 567 SYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPE 638 (727)
Q Consensus 567 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 638 (727)
....+.+..+|..+...+...|++++|...++++ ...|+...|..+...+...|+.++|.+.+++++.++|.
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 1012344556666665566667777777777766 34455555544555566777777777777777777774
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.047 Score=44.12 Aligned_cols=141 Identities=9% Similarity=0.049 Sum_probs=105.4
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH
Q 004856 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE 592 (727)
Q Consensus 513 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 592 (727)
+.-.|..++..++..+.... .+..-|+.++--....-+-+...++++.+-+-|.+ ..+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence 34568888888888888763 35566777776666666666667777666543222 24677777
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 004856 593 ARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLK 672 (727)
Q Consensus 593 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 672 (727)
....+-.++ .+..-...-+..+..+|..+.-..++..++..+|.++.....++.+|.+.|+..+|.+++++..++|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 777776664 234455666777889999999999999987777778999999999999999999999999999999985
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0041 Score=49.16 Aligned_cols=64 Identities=16% Similarity=0.183 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 004856 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKES 567 (727)
Q Consensus 502 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 567 (727)
+...|..+...|...|++++|+..|++.++. .| +...|..+..+|...|++++|...+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5667777888888888888888888888774 34 4667778888888888888888888877643
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0053 Score=63.20 Aligned_cols=68 Identities=9% Similarity=0.010 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCH-hhHHHHHHHHHHcCCHHHHHHHHHHHHc-----cCCCCc
Q 004856 576 HYASMVNLLGRAGHMDEARELVKDM---------PFKPDA-RVWGPLLSACKMHSETELAELTAEKLIS-----MEPENA 640 (727)
Q Consensus 576 ~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~p~~~ 640 (727)
+++.|..+|...|++++|+.+++++ +..|+. .+++.|...|..+|++++|+.+++++++ ++|+++
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp 421 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHP 421 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 3444444444444444444444433 123433 2556666667777777777777777765 356555
Q ss_pred chH
Q 004856 641 GNY 643 (727)
Q Consensus 641 ~~~ 643 (727)
.+-
T Consensus 422 ~~~ 424 (433)
T 3qww_A 422 YIS 424 (433)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00046 Score=69.18 Aligned_cols=439 Identities=11% Similarity=0.044 Sum_probs=233.0
Q ss_pred CchhhHHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhh
Q 004856 63 QNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCS 142 (727)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 142 (727)
-.+.+|+.|..++.+.|.+.+|.+-|=+. .|...|..+|.+..+.|.+++-+..+.-.++. .-++..=+.|+-+|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayA 127 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALA 127 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHH
Confidence 45678999999999999999998876444 45556889999999999999999888666654 234444567888899
Q ss_pred ccCChhHHHHHH------------HHHHHHcCC-------CchhHHHHHHHhhhccCCCChhhhhhh-ccCCCCCcccHH
Q 004856 143 CLLDFISGEKIH------------AQVVKLGFD-------SFDDVGDALVEFYIKCDGGFENEKGMI-QRKFKDLKSRWN 202 (727)
Q Consensus 143 ~~~~~~~a~~~~------------~~~~~~~~~-------~~~~~~~~li~~y~~~~~g~~~~a~~~-~~~~~~~~~~~~ 202 (727)
+.+++.+-+.++ +...+.|.- .++.-|.-|-..+.+. |++..|... .+ ..++.+|-
T Consensus 128 k~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L--~~yq~AVdaArK--Ans~ktWK 203 (624)
T 3lvg_A 128 KTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHL--GEYQAAVDGARK--ANSTRTWK 203 (624)
T ss_dssp TSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSC--SGGGSSTTTTTT--CCSSCSHH
T ss_pred hhCcHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHH--HHHHHHHHHHHh--cCChhHHH
Confidence 888766543322 222222210 0011112222222333 444333332 21 24778899
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCC
Q 004856 203 SLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA 282 (727)
Q Consensus 203 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 282 (727)
.+-.+|...+.+.-|.-.--.+.- .|| -...++..|-..|.+++-..+++..+... ......++-|.-.|+|-
T Consensus 204 eV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY- 276 (624)
T 3lvg_A 204 EVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF- 276 (624)
T ss_dssp HHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-
T ss_pred HHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-
Confidence 999999999998877665444432 122 23345556778888888888887766221 34566788888888875
Q ss_pred ChHHHHHHHhcCCC----C-------CeehHHHHHHHHHhcCCchHHHHHHHH--------HHHcC---CCCChhhHHHH
Q 004856 283 SLEDAKMLFDKMSD----K-------DRVVWNIMISAYYQSGFPKESLELLMC--------MVRSG---FRADLFTAIAA 340 (727)
Q Consensus 283 ~~~~A~~~~~~~~~----~-------~~~~~~~li~~~~~~g~~~~A~~~~~~--------m~~~g---~~p~~~t~~~l 340 (727)
++++-.+-++..-. | ....|.-++-.|.+-.+++.|....-+ ..-.. -.+|...|-..
T Consensus 277 ~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~EiyYKA 356 (624)
T 3lvg_A 277 KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRA 356 (624)
T ss_dssp CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCSHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcchHHHHHHH
Confidence 34444444443322 2 556788888888888888866433211 00000 02334444444
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHH-HHHHHHHhcCChHHH
Q 004856 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWS-SMIKGYVTHDQSLEA 419 (727)
Q Consensus 341 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A 419 (727)
|..|....-. .--.++.-+ ...+.+ +-.++.+.+.|++......+..+...|...-| ++-..|....+++.-
T Consensus 357 i~FYL~e~P~-lL~DLL~vL-~prlDh-----~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~L 429 (624)
T 3lvg_A 357 IQFYLEFKPL-LLNDLLMVL-SPRLDH-----TRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQAL 429 (624)
T ss_dssp HHHHTTSCCT-TSHHHHHHH-CTTCCS-----TTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHhChH-HHHHHHHhc-cccCCh-----HHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHH
Confidence 4444332110 000111100 001111 12344556666666666666666655554333 444555555555432
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 004856 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499 (727)
Q Consensus 420 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 499 (727)
. .-+..|-+-.....|.++ .++. -...-..-...|.+.+++.++..+..+=.
T Consensus 430 R-------------------~SId~ydNFD~i~LA~rL----EkHe---L~eFRrIAA~LYkkn~rw~qsi~l~KkDk-- 481 (624)
T 3lvg_A 430 R-------------------TSIDAYDNFDNISLAQRL----EKHE---LIEFRRIAAYLFKGNNRWKQSVELCKKDS-- 481 (624)
T ss_dssp H-------------------HTTSSCCCSCTTHHHHHH----HTCS---SHHHHHHHHHHHHTTCHHHHHSSCSSTTC--
T ss_pred H-------------------HHHHHhccccHHHHHHHH----hhCc---hHHHHHHHHHHHHhcccHHHHHHHHHhcc--
Confidence 1 112222222222323222 1111 11111222334666666666655543311
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 004856 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI 559 (727)
Q Consensus 500 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 559 (727)
.|.-.|...+..|+.+-|.++++-..+.| +...|...+-.|...=+++-+++
T Consensus 482 -----lykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlE 533 (624)
T 3lvg_A 482 -----LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 533 (624)
T ss_dssp -----CTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHH
T ss_pred -----cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHH
Confidence 11112333345566666666666666644 44556666666555545544443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.011 Score=60.82 Aligned_cols=37 Identities=5% Similarity=-0.322 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHc-----cCCCCcchHH
Q 004856 608 VWGPLLSACKMHSETELAELTAEKLIS-----MEPENAGNYV 644 (727)
Q Consensus 608 ~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~ 644 (727)
+++.|...|..+|++++|+.+++++++ +.|+++.+-.
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 455566667777777777777777765 4566655443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0049 Score=48.42 Aligned_cols=64 Identities=13% Similarity=0.186 Sum_probs=44.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHh-hHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchH
Q 004856 580 MVNLLGRAGHMDEARELVKDM-PFKP-DAR-VWGPLLSACKMHSETELAELTAEKLISMEPENAGNY 643 (727)
Q Consensus 580 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 643 (727)
....+.+.|++++|.+.+++. ...| +.. .|..+...+...|++++|+..++++++++|++..++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 455667778888888877776 3344 334 566666667777888888888888888877776665
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0098 Score=46.59 Aligned_cols=88 Identities=15% Similarity=0.117 Sum_probs=60.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHh-hHHHHHHHHHHc
Q 004856 543 GLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE-HYASMVNLLGRAGHMDEARELVKDM-PFKPDAR-VWGPLLSACKMH 619 (727)
Q Consensus 543 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~ 619 (727)
.....+...|++++|...++.+.+. .+.+.. .+..+..+|.+.|++++|.+.+++. ...|+.. .+..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 3456677888888888888888764 233456 7788888888888888888888877 3445432 2211
Q ss_pred CCHHHHHHHHHHHHccCCCCc
Q 004856 620 SETELAELTAEKLISMEPENA 640 (727)
Q Consensus 620 g~~~~A~~~~~~~~~~~p~~~ 640 (727)
+.+.++...+++....+|+++
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHHhccCcccc
Confidence 456667777777766666543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.55 E-value=0.026 Score=55.65 Aligned_cols=132 Identities=14% Similarity=0.074 Sum_probs=90.8
Q ss_pred CCChHHHHHHHHHHH--hcC---CHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHH----hcCC-------HHHHHHHH
Q 004856 535 RPDLITFLGLLTACV--NAG---LVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLG----RAGH-------MDEARELV 597 (727)
Q Consensus 535 ~p~~~t~~~ll~~~~--~~g---~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~----~~g~-------~~~A~~~~ 597 (727)
+.+...|...+++.. ..+ ...+|..+|++..+. .|+ ...|..+..+|. ..+. +..+.+..
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 456677777776643 333 357899999999964 676 334444333332 1111 11223322
Q ss_pred HhCCC-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004856 598 KDMPF-KPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 598 ~~~~~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 670 (727)
..+.. ..+..++..+...+...|++++|...++++++++| +...|..++.++.-.|++++|.+.+++.....
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 23322 34566777776667778999999999999999997 57788899999999999999999998876653
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.086 Score=59.80 Aligned_cols=102 Identities=15% Similarity=0.162 Sum_probs=65.7
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHH
Q 004856 377 DMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKY 456 (727)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 456 (727)
......|+++.|.++.+.+. +...|..+...+.+.++++.|.+.|.++.+ |..+...+...++.+...+
T Consensus 660 ~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred ehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 34567899999998887763 567899999999999999999999988753 3334444444666666555
Q ss_pred HHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 004856 457 LHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE 495 (727)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 495 (727)
+-+.....|. ++.-..+|.+.|++++|.+++.+
T Consensus 729 ~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 729 LAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 5444444331 12223335555666666555543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.019 Score=48.52 Aligned_cols=89 Identities=18% Similarity=0.073 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHhC-CCC-C--CHhhHHHHHHHHHHcCCHHHH
Q 004856 553 LVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG---HMDEARELVKDM-PFK-P--DARVWGPLLSACKMHSETELA 625 (727)
Q Consensus 553 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~ll~~~~~~g~~~~A 625 (727)
.+..+++.|.+.... + .++..+...+..++++.+ +.+++..++++. ... | ....+-.|.-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 455666666666553 3 367777777788888877 555788777766 222 4 233444455557888888888
Q ss_pred HHHHHHHHccCCCCcchH
Q 004856 626 ELTAEKLISMEPENAGNY 643 (727)
Q Consensus 626 ~~~~~~~~~~~p~~~~~~ 643 (727)
.+.++++++.+|++..+.
T Consensus 91 ~~y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQAK 108 (152)
T ss_dssp HHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHhcCCCCHHHH
Confidence 888888888888665443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.15 Score=57.88 Aligned_cols=103 Identities=17% Similarity=0.248 Sum_probs=69.9
Q ss_pred HHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHH
Q 004856 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558 (727)
Q Consensus 479 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 558 (727)
.....|++++|.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+...
T Consensus 661 ~~l~~~~~~~A~~~~~~~~----~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~ 727 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES----AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLV 727 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHH
T ss_pred hhhhcCCHHHHHHHHHhhC----cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHH
Confidence 3466788888888876653 568899999999999999999999988754 345555555677776665
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 004856 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601 (727)
Q Consensus 559 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 601 (727)
++-+..... | -++.-..+|.+.|++++|++++.+++
T Consensus 728 ~~~~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 728 TLAKDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 555544433 2 12333445566777777777766553
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.016 Score=54.68 Aligned_cols=87 Identities=13% Similarity=0.134 Sum_probs=61.7
Q ss_pred HHHHHHHHHhC-CCCCC---HhhHHHHHHHHHH-----cCCHHHHHHHHHHHHccCCCC-cchHHHHHHHHHhc-CChhH
Q 004856 590 MDEARELVKDM-PFKPD---ARVWGPLLSACKM-----HSETELAELTAEKLISMEPEN-AGNYVLLSNIYAAA-GKWNG 658 (727)
Q Consensus 590 ~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~-----~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 658 (727)
..+|...+++. .+.|+ ...|..+...|.+ -|+.++|++.|+++++++|+. ..++..++..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34555555555 45555 4466666666666 488888888888888888864 88888888887774 88888
Q ss_pred HHHHHHHHHhCCCccCCc
Q 004856 659 VAKMRTFLRDRGLKKTPG 676 (727)
Q Consensus 659 a~~~~~~m~~~~~~~~~~ 676 (727)
+.+++++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 888888887776544343
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.03 E-value=0.034 Score=44.06 Aligned_cols=72 Identities=14% Similarity=0.085 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-----C----CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHH
Q 004856 576 HYASMVNLLGRAGHMDEARELVKDM-----P----FKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLL 646 (727)
Q Consensus 576 ~~~~li~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 646 (727)
-+..|...+.+.|+++.|..+++.+ + ..+...++..|..++.+.|+++.|...++++++++|++..+...+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 3445555566666666666666554 0 112445777788889999999999999999999999887765544
Q ss_pred H
Q 004856 647 S 647 (727)
Q Consensus 647 ~ 647 (727)
.
T Consensus 87 ~ 87 (104)
T 2v5f_A 87 K 87 (104)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=2.3 Score=45.59 Aligned_cols=250 Identities=11% Similarity=0.015 Sum_probs=114.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCh
Q 004856 372 HNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451 (727)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 451 (727)
-+.-+..+.+.+++......+.. ...+...-.....+....|+..+|....+++-..| ......+..++..+.+.|.+
T Consensus 75 r~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 75 QSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQ 152 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCC
Confidence 34445556667778777776665 33344444445666677788777777777666554 22233444555555544433
Q ss_pred HHH--HHHHHHHHHhC-----------CCchH-hHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHH---HHHHHHHHHH
Q 004856 452 EHV--KYLHGYSMKLG-----------LNSLS-SVNTAIFISYAKCGCIEMAGELFDEEKIDSKDII---TWNSMISAYA 514 (727)
Q Consensus 452 ~~a--~~~~~~~~~~~-----------~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~li~~~~ 514 (727)
... .+=+..+...| ++++. .....++..+.+-..+ ....... .++.. .+..-+.-++
T Consensus 153 t~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~~~---~~~~~~~~~~~~~~~rla 226 (618)
T 1qsa_A 153 DPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFARTT---GATDFTRQMAAVAFASVA 226 (618)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHHS---CCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHhcc---CCChhhHHHHHHHHHHHH
Confidence 221 11111111111 11111 1112222222222111 1111111 11111 1111122223
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChHHHH----HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH
Q 004856 515 KHGDWSQCFKLYTQMKQSDVRPDLITFL----GLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHM 590 (727)
Q Consensus 515 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 590 (727)
+ .+.+.|..++....... ..+..... .+.......+...++...+...... .++.....-.+..-.+.|++
T Consensus 227 r-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~ 301 (618)
T 1qsa_A 227 R-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDR 301 (618)
T ss_dssp H-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCH
T ss_pred h-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCH
Confidence 3 36677777777765432 22322222 2222222334234555555554332 23333333334444466778
Q ss_pred HHHHHHHHhCCCCC-CHhh-HHHHHHHHHHcCCHHHHHHHHHHHHc
Q 004856 591 DEARELVKDMPFKP-DARV-WGPLLSACKMHSETELAELTAEKLIS 634 (727)
Q Consensus 591 ~~A~~~~~~~~~~p-~~~~-~~~ll~~~~~~g~~~~A~~~~~~~~~ 634 (727)
+.|...|+.|+..+ +..- .--+..+....|+.++|..+|+++..
T Consensus 302 ~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 302 RGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888887775332 2122 22233345667777777777777764
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.043 Score=42.37 Aligned_cols=68 Identities=13% Similarity=0.032 Sum_probs=46.4
Q ss_pred CCChhHHHHHHHHHHhcCC---HHHHHHHHHhC-CCCCCHh-hHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004856 571 EPSQEHYASMVNLLGRAGH---MDEARELVKDM-PFKPDAR-VWGPLLSACKMHSETELAELTAEKLISMEPE 638 (727)
Q Consensus 571 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 638 (727)
+.+...+..+..++...++ .++|..++++. ...|+.. .+..+...+.+.|++++|+..++++++.+|+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3456666677776654443 57777777776 4556444 4444445578888888888888888888886
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.60 E-value=1 Score=39.02 Aligned_cols=128 Identities=17% Similarity=0.139 Sum_probs=86.2
Q ss_pred HHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHH
Q 004856 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558 (727)
Q Consensus 479 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 558 (727)
.-..+|+++.|.++.+++. +...|..+.......|+++-|.+.|.+... +..+.-.|...|+.+.-.
T Consensus 14 LAL~lg~l~~A~e~a~~l~----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKLN----DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHTTCHHHHHHHHHHHC----CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHhcCCHHHHHHHHHHhC----CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 3467888888888877653 577899999999999999999998887654 445556666778877666
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004856 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKL 632 (727)
Q Consensus 559 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 632 (727)
++-+....+ | -++.-...+.-.|+++++.+++.+.+.-|.. .-....+|..+.|.++.+.+
T Consensus 81 kla~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 655544433 2 1233344555678888888888887533321 11234567777777776654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.50 E-value=0.051 Score=45.89 Aligned_cols=88 Identities=14% Similarity=0.131 Sum_probs=68.0
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC---CHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCCHHH
Q 004856 518 DWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAG---LVEEGRIIFKEMKESYGYEP--SQEHYASMVNLLGRAGHMDE 592 (727)
Q Consensus 518 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~ 592 (727)
....+.+.|.+....| .++..+...+..++.+.+ +.++++.+++...+. . .| ....+-.|.-+|.+.|++++
T Consensus 13 ~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHH
Confidence 3566777787777766 478888888888999888 677999999998876 3 35 35566677888899999999
Q ss_pred HHHHHHhC-CCCCCHhh
Q 004856 593 ARELVKDM-PFKPDARV 608 (727)
Q Consensus 593 A~~~~~~~-~~~p~~~~ 608 (727)
|.++++.+ .++|+..-
T Consensus 90 A~~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQ 106 (152)
T ss_dssp HHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHhcCCCCHH
Confidence 99999988 66775433
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.71 Score=39.99 Aligned_cols=104 Identities=10% Similarity=0.152 Sum_probs=65.7
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHH
Q 004856 377 DMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKY 456 (727)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 456 (727)
+...++|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3456778888888887765 4567888888888888888888888887653 3334444455566665555
Q ss_pred HHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 004856 457 LHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEK 497 (727)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 497 (727)
+-+.....|- ++.-...+.-.|+++++.++|.+..
T Consensus 82 la~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 82 MQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 5444444441 2222333445577777776665544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.26 E-value=0.38 Score=52.58 Aligned_cols=52 Identities=8% Similarity=-0.015 Sum_probs=49.6
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 004856 616 CKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLR 667 (727)
Q Consensus 616 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 667 (727)
|...|+++.|..+.+++...-|.+..+|..|+.+|...|+|+.|.-.++.+.
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 7789999999999999999999999999999999999999999999999874
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.24 E-value=0.26 Score=39.88 Aligned_cols=98 Identities=20% Similarity=0.095 Sum_probs=62.1
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH---HHHHHHhC-CCC-C-CHh-hHHHHHHHHH
Q 004856 545 LTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE---ARELVKDM-PFK-P-DAR-VWGPLLSACK 617 (727)
Q Consensus 545 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~~-~~~-p-~~~-~~~~ll~~~~ 617 (727)
+..-.....+..+.+-|...... |. |+..+--.+..++.+..+..+ ++.++++. ... | ... ..-.|.-++.
T Consensus 8 l~~~~~~~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~y 85 (126)
T 1nzn_A 8 LNELVSVEDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 85 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 33344445556666666666554 33 677777777788888776655 77777766 222 3 222 2333334478
Q ss_pred HcCCHHHHHHHHHHHHccCCCCcchHH
Q 004856 618 MHSETELAELTAEKLISMEPENAGNYV 644 (727)
Q Consensus 618 ~~g~~~~A~~~~~~~~~~~p~~~~~~~ 644 (727)
+.|++++|.+.++.+++.+|++..+..
T Consensus 86 klg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 86 RLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 888888888888888888887665544
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.67 E-value=0.93 Score=36.69 Aligned_cols=95 Identities=13% Similarity=0.138 Sum_probs=65.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHH---HHHHHHHhHHhcCCCC--ChhHHHHHHHHH
Q 004856 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEE---GRIIFKEMKESYGYEP--SQEHYASMVNLL 584 (727)
Q Consensus 510 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~---a~~~~~~~~~~~~~~p--~~~~~~~li~~~ 584 (727)
+..-........+.+.|.+....| .|+..+-..+..++.+...... ++.+++.+... + .| .....-.|.-++
T Consensus 8 l~~~~~~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~ 84 (126)
T 1nzn_A 8 LNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGN 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHH
Confidence 333334445566677777766655 4777777778888888776665 88888887754 2 24 344555677888
Q ss_pred HhcCCHHHHHHHHHhC-CCCCCHh
Q 004856 585 GRAGHMDEARELVKDM-PFKPDAR 607 (727)
Q Consensus 585 ~~~g~~~~A~~~~~~~-~~~p~~~ 607 (727)
.|.|++++|.++++.+ ...|+..
T Consensus 85 yklg~Y~~A~~~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGLLQTEPQNN 108 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHhhhHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999887 5666543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=93.55 E-value=0.42 Score=37.59 Aligned_cols=59 Identities=10% Similarity=0.047 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhcC-----CCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 004856 542 LGLLTACVNAGLVEEGRIIFKEMKESYG-----YEPSQEHYASMVNLLGRAGHMDEARELVKDM 600 (727)
Q Consensus 542 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 600 (727)
..+...+...|+++.|...++...+... -.+...++..|..+|.+.|++++|...++++
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a 72 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL 72 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3444444444444444444444443210 0112334444555555555555555555444
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=93.42 E-value=12 Score=41.83 Aligned_cols=260 Identities=13% Similarity=0.095 Sum_probs=132.3
Q ss_pred HhhcCCChHHHHHHHHHHHHhC--CCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC-CCC----------hhHHHHHHHH
Q 004856 343 SISTMKNIEWGKQMHANVLRNG--SDYQVSVHNSLIDMYCECEDLNCARKIFDSVK-TKT----------VVSWSSMIKG 409 (727)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~----------~~~~~~li~~ 409 (727)
+....|+.+++..++...+..+ -.+.......+.-+...+|.-+++..++.... ..+ +..-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4556778887777766544321 11122333444445556666556666554432 122 1122333334
Q ss_pred HHhcCC-hHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHH--hcC
Q 004856 410 YVTHDQ-SLEALRLFSEMKLEGVEVDFVTI--INILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYA--KCG 484 (727)
Q Consensus 410 ~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~--~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g 484 (727)
++-.|. -+++.+.+..+....- +..... .++...+...|+.+....++..+.+.. +..+...++.+++ -.|
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence 443443 2466777777665321 111111 122233556677777777777766532 2233333333333 567
Q ss_pred CHHHHHHHHHhccCCCCCHHHHH---HHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 004856 485 CIEMAGELFDEEKIDSKDIITWN---SMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIF 561 (727)
Q Consensus 485 ~~~~A~~~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 561 (727)
+.+.+..+.+.+........-|. ++.-+|+..|+.....+++..+.... ..+......+.-++...|+.+.+.+++
T Consensus 539 ~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 539 RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 77777777776553222233343 23446677788777777888887631 222222333333444456656666666
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhcCCH-HHHHHHHHhCCCCCCHhhH
Q 004856 562 KEMKESYGYEPSQEHYASMVNLLGRAGHM-DEARELVKDMPFKPDARVW 609 (727)
Q Consensus 562 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~p~~~~~ 609 (727)
+.+.+. ..|.+..-..+.-+....|.. .+|.+.+..+...+|..+-
T Consensus 618 ~~L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vr 664 (963)
T 4ady_A 618 QLLSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVR 664 (963)
T ss_dssp TTGGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHH
T ss_pred HHHHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHH
Confidence 655542 345544444444444445543 5677777777545555433
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.25 E-value=2.8 Score=34.06 Aligned_cols=139 Identities=8% Similarity=-0.044 Sum_probs=83.3
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHH
Q 004856 412 THDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGE 491 (727)
Q Consensus 412 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 491 (727)
-.|..++..++..+.... .+..-|+.++.-.....+-+-..+.++.+-+ ..| ...||++.....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFD----------is~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcC----------cHhhhcHHHHHH
Confidence 456666666666666543 2333344444333333333333333222211 111 234566666555
Q ss_pred HHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCC
Q 004856 492 LFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYE 571 (727)
Q Consensus 492 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 571 (727)
.+-.+. .+......-+..+...|+-++-.+++..+... .+|++.....+..||.+.|+..++.+++.++.++ |++
T Consensus 83 C~~~~n---~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~k 157 (172)
T 1wy6_A 83 CGVINN---TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK-GEK 157 (172)
T ss_dssp HHHHTT---CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCH
T ss_pred HHHHhc---chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hhH
Confidence 555443 34455566677788888888888888886442 4778888888888888888888888888888877 654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=93.21 E-value=1.5 Score=41.40 Aligned_cols=112 Identities=9% Similarity=0.038 Sum_probs=72.2
Q ss_pred CCHHHHHHHHHhccCCCCCHHHHHHHHHH-HHHc--CC------hHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHHh-
Q 004856 484 GCIEMAGELFDEEKIDSKDIITWNSMISA-YAKH--GD------WSQCFKLYTQMKQSDVRPD---LITFLGLLTACVN- 550 (727)
Q Consensus 484 g~~~~A~~~~~~~~~~~~~~~~~~~li~~-~~~~--g~------~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~- 550 (727)
|+..+-.+.+.+.....+....|..++.+ +... |+ ..+|..++++.++ +.|+ ...|..+...|..
T Consensus 135 ~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~v 212 (301)
T 3u64_A 135 GDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAA 212 (301)
T ss_dssp SCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHS
T ss_pred cchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhC
Confidence 33344444444444222344567666543 3332 32 4567777777777 5676 4567778777877
Q ss_pred ----cCCHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhc-CCHHHHHHHHHhC
Q 004856 551 ----AGLVEEGRIIFKEMKESYGYEP--SQEHYASMVNLLGRA-GHMDEARELVKDM 600 (727)
Q Consensus 551 ----~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~-g~~~~A~~~~~~~ 600 (727)
.|+.++|.+.|++..+. .| +..++....+.|++. |+.++|.+.+++.
T Consensus 213 Pp~~gGd~ekA~~~ferAL~L---nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 213 PESFGGGMEKAHTAFEHLTRY---CSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp CTTTTCCHHHHHHHHHHHHHH---CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred CCccCCCHHHHHHHHHHHHHh---CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 48888888888888854 45 366777778888774 8888888888776
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=92.71 E-value=7.3 Score=37.39 Aligned_cols=165 Identities=11% Similarity=0.064 Sum_probs=99.5
Q ss_pred hHHHHHhhcCCChHHHHHHHhcCCCCCeehHHHHHHHHHhcCCchHHHHH----HHHHHHcCCCCChhhHHHHHHHhhcC
Q 004856 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLEL----LMCMVRSGFRADLFTAIAAVSSISTM 347 (727)
Q Consensus 272 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~~~ 347 (727)
.++..=|.+.+++++|..++.. -...+.+.|+...|-++ .+...+.+++++......++..+...
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~ 105 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAEL 105 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 3455567778888888887654 23455677887776664 45556678889988888888777664
Q ss_pred CChH-HHHHHHHHHHH----hCC--CCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhc---CChH
Q 004856 348 KNIE-WGKQMHANVLR----NGS--DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTH---DQSL 417 (727)
Q Consensus 348 ~~~~-~a~~~~~~~~~----~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~~~ 417 (727)
..-+ .-.++...+++ .|- .-++.....+...|.+.|++.+|+..|-.-...|...+..++.-+... |...
T Consensus 106 p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~ 185 (312)
T 2wpv_A 106 DPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDS 185 (312)
T ss_dssp CTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred CCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcc
Confidence 3211 22344444443 332 236677888899999999999999888633323455555555544443 4433
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 004856 418 EALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSM 462 (727)
Q Consensus 418 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 462 (727)
++- ...-..++ -+...++...|..+++...
T Consensus 186 e~d--------------lf~~RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 186 TVA--------------EFFSRLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHH--------------HHHHHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred hHH--------------HHHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 321 11112222 2345667777777666443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.45 E-value=2.6 Score=34.77 Aligned_cols=72 Identities=14% Similarity=0.078 Sum_probs=44.5
Q ss_pred CCChhHHHHHHHHHHhcCCHH---HHHHHHHhC-CCCC-CHhhH-HHHHHHHHHcCCHHHHHHHHHHHHccCCCCcch
Q 004856 571 EPSQEHYASMVNLLGRAGHMD---EARELVKDM-PFKP-DARVW-GPLLSACKMHSETELAELTAEKLISMEPENAGN 642 (727)
Q Consensus 571 ~p~~~~~~~li~~~~~~g~~~---~A~~~~~~~-~~~p-~~~~~-~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 642 (727)
.|+..+--.+..++.+..+.+ +++.++++. ...| +..-+ --|.-++.+.|++++|.+..+.+++.+|+|..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 566666666677777766543 566666655 2233 22222 233334778888888888888888888866544
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=91.94 E-value=1.1 Score=37.39 Aligned_cols=56 Identities=13% Similarity=-0.028 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHhC-CC-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchH
Q 004856 588 GHMDEARELVKDM-PF-KPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNY 643 (727)
Q Consensus 588 g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 643 (727)
++.++|.++|+.+ .. +.=...|.....--.++|+++.|..++.+++.+.|.+...+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 4555555555544 10 11134555555556678888888888888888777544433
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=90.64 E-value=1.1 Score=37.37 Aligned_cols=55 Identities=11% Similarity=-0.059 Sum_probs=44.4
Q ss_pred HcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 004856 618 MHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLK 672 (727)
Q Consensus 618 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 672 (727)
..+|.++|.++|+.++++...-+..+...+.--.++|+...|++++.+....+.+
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 4478999999999998875545566667777788999999999999988876543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=90.21 E-value=27 Score=39.10 Aligned_cols=266 Identities=11% Similarity=0.021 Sum_probs=140.0
Q ss_pred HhhcCCChHHHHHHHhcCCCC----Ce--ehHHHHHHHHHhcCCchHHHHHHHHHHHcCC--C-----CChhhHHHHHHH
Q 004856 277 MYSKLASLEDAKMLFDKMSDK----DR--VVWNIMISAYYQSGFPKESLELLMCMVRSGF--R-----ADLFTAIAAVSS 343 (727)
Q Consensus 277 ~~~~~g~~~~A~~~~~~~~~~----~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~-----p~~~t~~~ll~~ 343 (727)
+....|+.+++..+++..... +. ..-..+.-+....|..+++++++.......- . +....-.++--+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 345678888899888876542 21 2223344556677777788887777654321 0 111111222222
Q ss_pred hhcCCC-hHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhcCChH
Q 004856 344 ISTMKN-IEWGKQMHANVLRNGSDYQVS--VHNSLIDMYCECEDLNCARKIFDSVKTK---TVVSWSSMIKGYVTHDQSL 417 (727)
Q Consensus 344 ~~~~~~-~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~ 417 (727)
++-.|. -+++...+..++...- .... ..-+|...|.-.|+-+....++..+.+. ++.-.-++.-++...|+.+
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 333332 2344444444443221 1111 1122333445567777767666654322 2222334445566788988
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH---HHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHH
Q 004856 418 EALRLFSEMKLEGVEVDFVTII---NILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFD 494 (727)
Q Consensus 418 ~A~~~~~~m~~~g~~p~~~t~~---~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 494 (727)
.+..+++.+.... .| ..-|. .+.-+|+..|+.....+++..+.... ..+..-...+.-++.-.|+.+.+.++++
T Consensus 542 ~~~~li~~L~~~~-dp-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 542 LADDLITKMLASD-ES-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGHHHHHHHHHCS-CH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHHhCC-CH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 8888888887641 22 22332 33456788889888888888877643 2233322233333444677666777776
Q ss_pred hccCC-CCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 004856 495 EEKID-SKDIITWNSMISAYAKHGDW-SQCFKLYTQMKQSDVRPDLITFLGLLTACV 549 (727)
Q Consensus 495 ~~~~~-~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 549 (727)
.+... .|.+..--++.-+....|.. .+++.++..+.. .+|..+-...+.++.
T Consensus 619 ~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 619 LLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALS 672 (963)
T ss_dssp TGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHH
Confidence 54431 33333333344444445544 678888888874 455544433333333
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=89.93 E-value=1.6 Score=35.42 Aligned_cols=72 Identities=13% Similarity=0.060 Sum_probs=35.8
Q ss_pred CCChhHHHHHHHHHHhcCCH---HHHHHHHHhC-CCCCC--HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcch
Q 004856 571 EPSQEHYASMVNLLGRAGHM---DEARELVKDM-PFKPD--ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGN 642 (727)
Q Consensus 571 ~p~~~~~~~li~~~~~~g~~---~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 642 (727)
.|+..+--.+..++.+..+. .+++.++++. ...|. ...+--|.-++.+.|++++|.+..+.+++.+|+|..+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 34455544555555555443 2445555444 12231 1233333334666666666666666666666655443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=89.39 E-value=16 Score=35.30 Aligned_cols=132 Identities=15% Similarity=0.149 Sum_probs=83.9
Q ss_pred hHHHHHhhcCCChHHHHHHHhcCCCCCeehHHHHHHHHHhcCCchHHHHHH----HHHHHcCCCCChhhHHHHHHHhhcC
Q 004856 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELL----MCMVRSGFRADLFTAIAAVSSISTM 347 (727)
Q Consensus 272 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~~~ 347 (727)
.++..=|.+.+++++|.+++.. -...+.+.|+...|-++- +...+.++++|..+...++..+...
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 3445557788888888887644 244566778777666554 5556778899998888888887766
Q ss_pred CChH-HHHHHHHHHH----HhC--CCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcC
Q 004856 348 KNIE-WGKQMHANVL----RNG--SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHD 414 (727)
Q Consensus 348 ~~~~-~a~~~~~~~~----~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 414 (727)
..-+ .-..+...++ +.| ..-|......+...|.+.+++.+|+..|-.-.++.+..+..++.-+...+
T Consensus 108 ~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 108 QPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS
T ss_pred CCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 5422 2233344443 334 23356777888888999999999988885322222355555554444433
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=88.65 E-value=5.1 Score=30.38 Aligned_cols=86 Identities=8% Similarity=0.036 Sum_probs=59.3
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004856 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKL 428 (727)
Q Consensus 349 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 428 (727)
.-++|..|-+.+...+- ...+--.-+..+...|++++|..+.+...-||...|-+|-. .+.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 44556555555555543 22233333445678999999999999999999999988765 467888888888878877
Q ss_pred CCCCCCHHHHH
Q 004856 429 EGVEVDFVTII 439 (727)
Q Consensus 429 ~g~~p~~~t~~ 439 (727)
+| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 66 45544443
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=88.11 E-value=4.8 Score=30.47 Aligned_cols=86 Identities=8% Similarity=-0.031 Sum_probs=59.7
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004856 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKL 428 (727)
Q Consensus 349 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 428 (727)
.-++|..|-+.+...+- ...+--.-+..+...|++++|..+.+...-||...|-+|-. .+.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 44555555555555543 22233333445678999999999999999999999987765 478888888888888877
Q ss_pred CCCCCCHHHHH
Q 004856 429 EGVEVDFVTII 439 (727)
Q Consensus 429 ~g~~p~~~t~~ 439 (727)
+| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 66 45555443
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=86.75 E-value=8.6 Score=29.20 Aligned_cols=59 Identities=19% Similarity=0.177 Sum_probs=43.2
Q ss_pred HHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHH
Q 004856 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFL 542 (727)
Q Consensus 479 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 542 (727)
.+...|++++|..+.+... .||...|-++-. .+.|-.+++..-+.++..+| .|....|.
T Consensus 49 SLmNrG~Yq~Al~l~~~~c--~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLA--YPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSC--CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHHH
T ss_pred HHHcchhHHHHHHhcCCCC--CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 4567888889988888887 889988877644 46777777777777777766 55444443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=85.84 E-value=6 Score=30.20 Aligned_cols=63 Identities=21% Similarity=0.240 Sum_probs=50.2
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 004856 518 DWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582 (727)
Q Consensus 518 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 582 (727)
+.-+..+-++.+....+.|++....+.++||.+.+++..|.++++.++.+.| +...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 4456667777888888999999999999999999999999999999987633 33456766654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.80 E-value=5 Score=34.08 Aligned_cols=27 Identities=11% Similarity=0.138 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 004856 575 EHYASMVNLLGRAGHMDEARELVKDMP 601 (727)
Q Consensus 575 ~~~~~li~~~~~~g~~~~A~~~~~~~~ 601 (727)
+.---+..+|.+.|++++|+.+++..+
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 333345666667777777777777664
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=85.04 E-value=23 Score=35.26 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=10.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH
Q 004856 509 MISAYAKHGDWSQCFKLYTQMKQ 531 (727)
Q Consensus 509 li~~~~~~g~~~~A~~~~~~m~~ 531 (727)
++..|...|++.+|.+++.++.+
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~ 127 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLR 127 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 34444444455554444444443
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=85.02 E-value=8.1 Score=29.27 Aligned_cols=59 Identities=17% Similarity=0.127 Sum_probs=43.0
Q ss_pred HHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHH
Q 004856 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFL 542 (727)
Q Consensus 479 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 542 (727)
.+...|++++|..+.+... .||...|-++-. .+.|-.+++..-+.++..+| .|....|.
T Consensus 48 SLmNrG~Yq~Al~l~~~~c--~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNP--WPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCC--CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHcchhHHHHHHhcCCCC--CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 4567788888888888877 888888877643 47777788877777777776 55444443
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=83.72 E-value=14 Score=34.22 Aligned_cols=120 Identities=13% Similarity=0.097 Sum_probs=74.0
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChh----HHHHHHHHHHhc
Q 004856 512 AYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE----HYASMVNLLGRA 587 (727)
Q Consensus 512 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~li~~~~~~ 587 (727)
...+.|+.++|++....-++.. +-|...-..|+..+|-.|+|+.|.+-++...+. .|+.. .|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH----
Confidence 4456788888888888777753 336777777888888888888888888877743 55533 33333332
Q ss_pred CCHHHHHH-HHHhC--C--CCCCHhhHHHHHHH--HHHcCCHHHHHHHHHHHHccCCCCcch
Q 004856 588 GHMDEARE-LVKDM--P--FKPDARVWGPLLSA--CKMHSETELAELTAEKLISMEPENAGN 642 (727)
Q Consensus 588 g~~~~A~~-~~~~~--~--~~p~~~~~~~ll~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~ 642 (727)
+..++ +|..- + +.....-...++.+ ....|+.+.|..+-.++.+..|..+..
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~ 136 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 136 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCC
Confidence 12221 22211 1 11112233344455 456789999999999988887765543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=83.37 E-value=2.5 Score=42.53 Aligned_cols=67 Identities=12% Similarity=0.051 Sum_probs=50.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCccCC
Q 004856 609 WGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRD-----RGLKKTP 675 (727)
Q Consensus 609 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~ 675 (727)
...++..+...|+.+++...++.++..+|-+...+..++.+|...|+..+|.+.|+...+ .|+.+.|
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 344556667788888888888888888888888888888888888888888888877643 3665443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=83.34 E-value=22 Score=41.58 Aligned_cols=167 Identities=11% Similarity=0.106 Sum_probs=99.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCh
Q 004856 372 HNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451 (727)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 451 (727)
...++..+.+.+..+.+.++..-.+. +...--.+..+|...|++++|.+.|.+... |+..+.... ...
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~----------~~~ 882 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF----------AVL 882 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC----------SSH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh----------hhh
Confidence 44566667778888888776655543 444445566788899999999999987532 221111000 000
Q ss_pred HHHHHHHHHHHH-hC-CCchHhHHHHHHHHHHhcCCHHHHHHHHHh----ccCCCCC--HHHHHHHHHHHHHcCChHHHH
Q 004856 452 EHVKYLHGYSMK-LG-LNSLSSVNTAIFISYAKCGCIEMAGELFDE----EKIDSKD--IITWNSMISAYAKHGDWSQCF 523 (727)
Q Consensus 452 ~~a~~~~~~~~~-~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----~~~~~~~--~~~~~~li~~~~~~g~~~~A~ 523 (727)
.. +..+.. .. ...-...|..++..+.+.|.++.+.++-.. .....++ ...|..+..++...|++++|.
T Consensus 883 ~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay 958 (1139)
T 4fhn_B 883 RE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH 958 (1139)
T ss_dssp HH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred cc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence 00 000111 00 112234566677777777777776665543 2211222 236888999999999999999
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHH
Q 004856 524 KLYTQMKQSDVRPDLITFLGLLTACVNAGLVEE 556 (727)
Q Consensus 524 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 556 (727)
..+-.+..... -...+..|+...+..|..+.
T Consensus 959 ~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 959 VALMVLSTTPL--KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHhCCCHHH--HHHHHHHHHHHHHhCCChhh
Confidence 99888876432 35567777777777766544
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=83.27 E-value=7 Score=39.26 Aligned_cols=70 Identities=14% Similarity=0.134 Sum_probs=52.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHH----hcCCCCChhHH
Q 004856 506 WNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKE----SYGYEPSQEHY 577 (727)
Q Consensus 506 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~ 577 (727)
...++..+...|++++|+..+..+... .| +...+..++.++...|+..+|++.|+.+.+ ..|+.|+..+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 344666777888888888888888764 45 677888888888888888888888877643 34888876643
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.53 E-value=7.5 Score=42.55 Aligned_cols=52 Identities=17% Similarity=-0.035 Sum_probs=41.2
Q ss_pred CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcC
Q 004856 602 FKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAG 654 (727)
Q Consensus 602 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 654 (727)
.+.+..-|..|.....+.+++++|++.|+..+... -++.....|+.+|.+.+
T Consensus 609 ~kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~R-Fs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 609 EKHSGLEWELLGLIMLRTWHWEDAVACLRTSIVAR-FDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-CCHHHHHHHHHHHHSCC
T ss_pred cccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHhcC
Confidence 34566778888888888889999999999988754 36778888888888766
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.76 E-value=52 Score=33.57 Aligned_cols=188 Identities=8% Similarity=0.081 Sum_probs=121.9
Q ss_pred cCChHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHH-hCCCchHhH--HHHHHHHHHhcC
Q 004856 413 HDQSLEALRLFSEMKLE-----GVEVDFVTIINILPACVNIGALEHVKYLHGYSMK-LGLNSLSSV--NTAIFISYAKCG 484 (727)
Q Consensus 413 ~g~~~~A~~~~~~m~~~-----g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-~~~~~~~~~--~~~li~~~~~~g 484 (727)
.|++++|++.+..+.+. ...........++..|...++++........+.+ +|..+...+ ...++.......
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 37889999888766542 2444566788899999999999998887766654 443332221 122333333334
Q ss_pred CH--HHHHHHHHhccCCC---C--C---HHHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC---hHHHHHHHHHHH
Q 004856 485 CI--EMAGELFDEEKIDS---K--D---IITWNSMISAYAKHGDWSQCFKLYTQMKQS--DVRPD---LITFLGLLTACV 549 (727)
Q Consensus 485 ~~--~~A~~~~~~~~~~~---~--~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~t~~~ll~~~~ 549 (727)
.. +.-..+.+.+.... - . ......|...|...|++.+|..++..+... |..+. ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 33 23344444433221 1 1 123456778889999999999999998743 22221 235667788899
Q ss_pred hcCCHHHHHHHHHHhHHhc-CCC--CC--hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 004856 550 NAGLVEEGRIIFKEMKESY-GYE--PS--QEHYASMVNLLGRAGHMDEARELVKDM 600 (727)
Q Consensus 550 ~~g~~~~a~~~~~~~~~~~-~~~--p~--~~~~~~li~~~~~~g~~~~A~~~~~~~ 600 (727)
..+++..|..+++++.... ... |+ ...+..++..+...+++.+|.+.|.+.
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 9999999999999875321 122 22 346778888888999999998887665
|
| >2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A | Back alignment and structure |
|---|
Probab=80.72 E-value=41 Score=36.15 Aligned_cols=80 Identities=13% Similarity=-0.052 Sum_probs=36.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHh---
Q 004856 406 MIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAK--- 482 (727)
Q Consensus 406 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--- 482 (727)
....+.-.|+++.|++.+-+. ...+.+.+...+..+.-.+- ...++..- .+ .| ..-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~--~~-~~-~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTK--KP-KR-DIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccC--CC-cc-cccHHHHHHHHHHHhh
Confidence 344555678888888877654 24555555555544332221 11111100 00 11 1224455555554
Q ss_pred cCCHHHHHHHHHhc
Q 004856 483 CGCIEMAGELFDEE 496 (727)
Q Consensus 483 ~g~~~~A~~~~~~~ 496 (727)
..+..+|.+.|--+
T Consensus 369 ~td~~~Al~Y~~li 382 (661)
T 2qx5_A 369 YSDPRVAVEYLVLI 382 (661)
T ss_dssp TTCHHHHHHHHHGG
T ss_pred cCCHHHHHHHHHHH
Confidence 46666666666555
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=80.32 E-value=36 Score=31.66 Aligned_cols=47 Identities=6% Similarity=-0.072 Sum_probs=20.8
Q ss_pred cCChhHHHHHHHHHHHhcCCCChh--HHhHHHHHhhcCCChHHHHHHHh
Q 004856 246 LKSLELGRIVHCVAVVSDFCKDLS--VNTALLSMYSKLASLEDAKMLFD 292 (727)
Q Consensus 246 ~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~ 292 (727)
.++.....++.+.+++.|..++.. ...+.+...++.|+.+-+..+++
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 334333445555566665544321 11222333344455555555544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 727 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (99), Expect = 1e-04
Identities = 45/378 (11%), Positives = 106/378 (28%), Gaps = 12/378 (3%)
Query: 284 LEDAKMLFDKMSDKD---RVVWNIMISAYYQSGFPKESLELL-MCMVRSGFRADLFTAIA 339
E A+ ++ ++ V ++ S ++Q S + + ++ A+ ++ +
Sbjct: 15 FEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLG 74
Query: 340 AVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKT 399
V HA L+ + + + E A
Sbjct: 75 NVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL 134
Query: 400 VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHG 459
S + + EA + + +E V N+ G + +
Sbjct: 135 YCVRSDLGNLLKALGRLEEAKACYLKA-IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFE 193
Query: 460 YSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEE-KIDSKDIITWNSMISAYAKHGD 518
++ L N L + + + + A + + + ++ Y + G
Sbjct: 194 KAVTLDPNFLDAYI-NLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGL 252
Query: 519 WSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYA 578
Y + + P L A +
Sbjct: 253 IDLAIDTYRRAIELQ--PHFPDAYCNL-ANALKEKGSVAEAEDCYNTALRLCPTHADSLN 309
Query: 579 SMVNLLGRAGHMDEARELVKD-MPFKPD-ARVWGPLLSACKMHSETELAELTAEKLISME 636
++ N+ G+++EA L + + P+ A L S + + + A + ++ I +
Sbjct: 310 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369
Query: 637 PENAGNYVLLSNIYAAAG 654
P A Y + N
Sbjct: 370 PTFADAYSNMGNTLKEMQ 387
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 727 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.88 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.87 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.52 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.49 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.06 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.01 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.98 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.98 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.96 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.92 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.9 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.9 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.82 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.74 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.54 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.54 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.51 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.51 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.39 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.39 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.39 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.37 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.37 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.36 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.27 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.25 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.25 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.16 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.1 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.02 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.0 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.98 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.97 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.96 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.95 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.95 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.93 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.91 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.82 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.79 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.77 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.7 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.63 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.54 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.45 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.44 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.44 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.38 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.28 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.27 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.23 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.14 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.98 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.55 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.44 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.34 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.18 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.78 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.02 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 92.24 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 91.39 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 90.67 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 85.05 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1e-19 Score=187.04 Aligned_cols=375 Identities=12% Similarity=0.062 Sum_probs=256.8
Q ss_pred HHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCC---CCeehHHHHHHHHHhcCCchH
Q 004856 241 RSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD---KDRVVWNIMISAYYQSGFPKE 317 (727)
Q Consensus 241 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 317 (727)
..+.+.|++++|.+.+..+++.. +.++.++..+...|.+.|++++|...|++..+ .+..+|..+...|.+.|++++
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~ 85 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccc
Confidence 34455677777777777776654 23455666666666666777777666666532 244556666666666666666
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 004856 318 SLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT 397 (727)
Q Consensus 318 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 397 (727)
|+..+......... +.............................. ..
T Consensus 86 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~ 132 (388)
T d1w3ba_ 86 AIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQY--------------------------------NP 132 (388)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--------------------------------CT
T ss_pred cccccccccccccc-ccccccccccccccccccccccccccccccc--------------------------------cc
Confidence 66666666554221 1122212222222222222222222221111 12
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHH
Q 004856 398 KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIF 477 (727)
Q Consensus 398 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 477 (727)
.....+..........+....+...+.+..... +-+...+..+...+...|..+.|...+....+.. +.+...+..+.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 210 (388)
T d1w3ba_ 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLG 210 (388)
T ss_dssp TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHh
Confidence 223333344444555566666666665555432 2233455555566666777777777776666654 33456677777
Q ss_pred HHHHhcCCHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHH
Q 004856 478 ISYAKCGCIEMAGELFDEEKID-SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVE 555 (727)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~ 555 (727)
..+...|++++|...+++.... ..+...|..+...+.+.|++++|+..|++..+ +.| +..++..+..++...|+++
T Consensus 211 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~ 288 (388)
T d1w3ba_ 211 NVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVA 288 (388)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHH
T ss_pred hhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHH
Confidence 8888888888888888874432 44677888899999999999999999999988 456 5778999999999999999
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004856 556 EGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPD-ARVWGPLLSACKMHSETELAELTAEKLI 633 (727)
Q Consensus 556 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 633 (727)
+|...++..... .+.+...+..+...+.+.|++++|++.+++. ...|+ ..+|..+...+...|++++|+..+++++
T Consensus 289 ~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 366 (388)
T d1w3ba_ 289 EAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhhhcc--CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999998864 4556778899999999999999999999987 66675 4577888888999999999999999999
Q ss_pred ccCCCCcchHHHHHHHHHhcCC
Q 004856 634 SMEPENAGNYVLLSNIYAAAGK 655 (727)
Q Consensus 634 ~~~p~~~~~~~~l~~~~~~~g~ 655 (727)
+++|+++.+|..++.+|.+.|+
T Consensus 367 ~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 367 RISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCTTCHHHHHHHHHHHHHTCC
T ss_pred HhCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999998885
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=1e-18 Score=179.30 Aligned_cols=356 Identities=12% Similarity=0.070 Sum_probs=280.3
Q ss_pred HHHHHhcCCchHHHHHHHHHHHcCCCC-ChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 004856 306 ISAYYQSGFPKESLELLMCMVRSGFRA-DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECED 384 (727)
Q Consensus 306 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 384 (727)
...+.+.|++++|++.|+++.+. .| +...+..+..++...|++++|...++.+++.. +.+..++..+...|.+.|+
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence 34566778888888888887765 34 35566667777778888888888888887764 3456678888899999999
Q ss_pred HHHHHHHHhcCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 004856 385 LNCARKIFDSVKTK---TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYS 461 (727)
Q Consensus 385 ~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 461 (727)
+++|.+.+...... +...+..........+....+............ ................+....+.......
T Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhHHHHHHh
Confidence 99999988876543 334455555555666666666666666555433 33344444555566777777777777766
Q ss_pred HHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHH
Q 004856 462 MKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLIT 540 (727)
Q Consensus 462 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 540 (727)
.... +.+...+..+...+...|++++|...+++.....| +...|..+...+...|++++|+..+++..... +.+...
T Consensus 162 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 239 (388)
T d1w3ba_ 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred hccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHH
Confidence 6654 44567778888899999999999999998543344 56789999999999999999999999998854 446778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHhhHHHHHHHHHH
Q 004856 541 FLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-P-FKPDARVWGPLLSACKM 618 (727)
Q Consensus 541 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~ 618 (727)
+..+..++...|++++|...|+++.+. .+-+...+..+...+.+.|++++|.+.++.. . .+.+...+..+...+..
T Consensus 240 ~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (388)
T d1w3ba_ 240 HGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHH
Confidence 888999999999999999999999864 2334678999999999999999999999887 2 33466778888888999
Q ss_pred cCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 619 HSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 619 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
.|++++|+..++++++++|+++.++..++.+|.+.|++++|.+.+++..+.
T Consensus 318 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999987654
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=6.6e-13 Score=131.83 Aligned_cols=243 Identities=11% Similarity=0.016 Sum_probs=156.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhc
Q 004856 405 SMIKGYVTHDQSLEALRLFSEMKLEGVEVD-FVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC 483 (727)
Q Consensus 405 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 483 (727)
.....+.+.|++++|+..|++..+. .|+ ...+..+..++...|++++|...+..+.+.. +.+...+..+...|...
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccc
Confidence 3456677888888888888888775 343 4455556666666666666666666655543 22333444444444444
Q ss_pred CCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004856 484 GCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKE 563 (727)
Q Consensus 484 g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 563 (727)
|++++|.+.+++.....|+............ ...+.......+..+...+...++...+..
T Consensus 101 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYTPAYAHLVTPAEEGA-------------------GGAGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp TCHHHHHHHHHHHHHTSTTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhHHHhccchHHHHHhhhhhh-------------------hhcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 4444444444443221221110000000000 000000111122234455667788888888
Q ss_pred hHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcc
Q 004856 564 MKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAG 641 (727)
Q Consensus 564 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 641 (727)
..+...-.++..++..+...+.+.|++++|+..+++. ...| +...|..+...+...|++++|+..++++++++|+++.
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 241 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence 7765333445677888889999999999999999887 3445 4567888888899999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 642 NYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 642 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
++..++.+|.+.|++++|++.+++..+.
T Consensus 242 a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 242 SRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999987664
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=2.8e-12 Score=127.19 Aligned_cols=267 Identities=11% Similarity=0.031 Sum_probs=193.3
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC
Q 004856 374 SLIDMYCECEDLNCARKIFDSVKTK---TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA 450 (727)
Q Consensus 374 ~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 450 (727)
.....+.+.|++++|...|+++.+. ++.+|..+...|...|++++|+..|.+..+.. +-+...+..+...+...|+
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 3556788999999999999987643 56789999999999999999999999998753 2245677788889999999
Q ss_pred hHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004856 451 LEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMK 530 (727)
Q Consensus 451 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 530 (727)
+++|...+..+........ ........... ..+.......+..+...+...+|.+.|.+..
T Consensus 103 ~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al 163 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPAYA-HLVTPAEEGAG------------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAV 163 (323)
T ss_dssp HHHHHHHHHHHHHTSTTTG-GGCC---------------------------------CTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhccchH-HHHHhhhhhhh------------------hcccccchhhHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999998877542211 00000000000 0111111122333445567788888888887
Q ss_pred HCCC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHh
Q 004856 531 QSDV-RPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DAR 607 (727)
Q Consensus 531 ~~g~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~ 607 (727)
+..- .++...+..+...+...|++++|+..++..... .+-+...|..+...|.+.|++++|.+.++++ ...| +..
T Consensus 164 ~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (323)
T d1fcha_ 164 RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 241 (323)
T ss_dssp HHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHhhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence 6321 224667888888999999999999999998865 2334678889999999999999999999987 4556 455
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcch-----------HHHHHHHHHhcCChhHHHHH
Q 004856 608 VWGPLLSACKMHSETELAELTAEKLISMEPENAGN-----------YVLLSNIYAAAGKWNGVAKM 662 (727)
Q Consensus 608 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~~~a~~~ 662 (727)
+|..+..+|...|++++|+..++++++++|++... +..+..++...|+.+.+...
T Consensus 242 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 242 SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 78888888999999999999999999988876543 34566677777877655433
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=7.1e-08 Score=95.78 Aligned_cols=259 Identities=13% Similarity=0.012 Sum_probs=155.1
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhcCCChHHHHHHHHHHHHhC----CC-chHhHHHHHHHHH
Q 004856 410 YVTHDQSLEALRLFSEMKLEGVEVD----FVTIINILPACVNIGALEHVKYLHGYSMKLG----LN-SLSSVNTAIFISY 480 (727)
Q Consensus 410 ~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~li~~~ 480 (727)
+...|++++|++++++..+.....+ ...+..+..++...|++++|...+....+.. .. .....+..+...+
T Consensus 22 ~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 101 (366)
T d1hz4a_ 22 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 101 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 3444555555555554443211111 1123333344444555555555544443311 00 1122334455566
Q ss_pred HhcCCHHHHHHHHHhcc-------CC-CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC----CChHHHHHHHHH
Q 004856 481 AKCGCIEMAGELFDEEK-------ID-SKD-IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVR----PDLITFLGLLTA 547 (727)
Q Consensus 481 ~~~g~~~~A~~~~~~~~-------~~-~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~t~~~ll~~ 547 (727)
...|++..+...+.+.. .. .+. ...+..+...+...|+++.+...+.+.....-. ....++......
T Consensus 102 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (366)
T d1hz4a_ 102 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 181 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 66777777766666421 10 111 234556667788889999998888887753211 123455666677
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-----CHhhHHHHHHHH
Q 004856 548 CVNAGLVEEGRIIFKEMKESYGYEPS-----QEHYASMVNLLGRAGHMDEARELVKDM-PFKP-----DARVWGPLLSAC 616 (727)
Q Consensus 548 ~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~ll~~~ 616 (727)
+...+....+...+........-... ...+..+...+...|++++|...+++. ...| ....+..+...+
T Consensus 182 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 261 (366)
T d1hz4a_ 182 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 261 (366)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 77888888888887766543221111 234556677788889999999998877 2222 123445566678
Q ss_pred HHcCCHHHHHHHHHHHHc------cCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004856 617 KMHSETELAELTAEKLIS------MEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRD 668 (727)
Q Consensus 617 ~~~g~~~~A~~~~~~~~~------~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 668 (727)
...|++++|...+++++. ..|....++..++.+|...|++++|.+.+++..+
T Consensus 262 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 262 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 889999999999998874 2344556788889999999999999999887644
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=3e-09 Score=103.85 Aligned_cols=225 Identities=8% Similarity=0.050 Sum_probs=143.1
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcC-CHHHHHHHHHhccCCCC-CHHHHHHHHHHHH
Q 004856 437 TIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCG-CIEMAGELFDEEKIDSK-DIITWNSMISAYA 514 (727)
Q Consensus 437 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~ 514 (727)
.+..+-..+.+.+..++|.++++.+++.. +-+...|+....++...| ++++|...++......| +..+|+.+...+.
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~ 123 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 123 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Confidence 44455555667777788888888877765 445566666666666655 47777777777433333 5677777777777
Q ss_pred HcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCC---
Q 004856 515 KHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP-SQEHYASMVNLLGRAGH--- 589 (727)
Q Consensus 515 ~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~--- 589 (727)
+.|++++|++.++++.+ +.| +...|..+...+...|++++|+..++.+.+. .| +...|+.+..++.+.|.
T Consensus 124 ~l~~~~eAl~~~~kal~--~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~---~p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 124 WLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred hhccHHHHHHHHhhhhh--hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---CCccHHHHHHHHHHHHHccccch
Confidence 77888888888877777 345 5667777777777777878888777777754 33 35566666666555444
Q ss_pred ---HHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcc--hHHHHHHHHHhc--CChhHHH
Q 004856 590 ---MDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAG--NYVLLSNIYAAA--GKWNGVA 660 (727)
Q Consensus 590 ---~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~--~~~~l~~~~~~~--g~~~~a~ 660 (727)
+++|.+.+.++ ...| +...|..+...+. ....+++...++++.++.|+... .+..++.+|... +..+.+.
T Consensus 199 ~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~ 277 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 277 (315)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred hhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 45666666655 3445 4455655544443 33456677777777776665433 334555555443 5555666
Q ss_pred HHHHHHHh
Q 004856 661 KMRTFLRD 668 (727)
Q Consensus 661 ~~~~~m~~ 668 (727)
..+++..+
T Consensus 278 ~~~~ka~~ 285 (315)
T d2h6fa1 278 DILNKALE 285 (315)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.98 E-value=4.9e-08 Score=94.92 Aligned_cols=188 Identities=9% Similarity=0.046 Sum_probs=138.5
Q ss_pred ChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-C-HHHHHHHHHHHHHcCChHHHHHHHH
Q 004856 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-D-IITWNSMISAYAKHGDWSQCFKLYT 527 (727)
Q Consensus 450 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~-~~~~~~li~~~~~~g~~~~A~~~~~ 527 (727)
..+++..+++...+...+.+...+...+..+.+.|+++.|..+|+++....| + ...|...+..+.+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3466777788777665566667777788888888899999998888654444 3 3478888888888888999999998
Q ss_pred HHHHCCCCCChHHHHHHHHH-HHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC----CC
Q 004856 528 QMKQSDVRPDLITFLGLLTA-CVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM----PF 602 (727)
Q Consensus 528 ~m~~~g~~p~~~t~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~ 602 (727)
++++.+ +.+...|...... +...|+.+.|..+|+.+.+. .+.+...|...++.+.+.|+.++|+.+|++. +.
T Consensus 159 ~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 888753 2244444443332 33457888899999888875 3445678888888888889999998888876 33
Q ss_pred CCC--HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCc
Q 004856 603 KPD--ARVWGPLLSACKMHSETELAELTAEKLISMEPENA 640 (727)
Q Consensus 603 ~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (727)
.|+ ...|...+..-..+|+.+.+..+++++.+..|.+.
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 443 34788888877888999999888888888777543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=1.6e-08 Score=98.49 Aligned_cols=192 Identities=8% Similarity=-0.024 Sum_probs=148.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcCC-ChHHHHHHHHHHHHhCCCchHhHHHHHHH
Q 004856 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFV-TIINILPACVNIG-ALEHVKYLHGYSMKLGLNSLSSVNTAIFI 478 (727)
Q Consensus 401 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 478 (727)
..++.+...+.+.+.+++|+++++++++. .|+.. .|.....++...+ ++++|...++.+.+.. +-+..+|..+..
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~ 120 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence 46777778888999999999999999985 56654 5566666777766 5899999999998876 556778888888
Q ss_pred HHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCC---
Q 004856 479 SYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGL--- 553 (727)
Q Consensus 479 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~--- 553 (727)
.+.+.|++++|...+++.....| +...|..+...+.+.|++++|++.++++++. .| +...|+.+...+.+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccch
Confidence 89999999999999998554444 7889999999999999999999999999984 56 56778877777666554
Q ss_pred ---HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 004856 554 ---VEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM 600 (727)
Q Consensus 554 ---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 600 (727)
+++|...+..+.+. .+.+...|..+...+...| .+++.+.++..
T Consensus 199 ~~~~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~ 245 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRG-LSKYPNLLNQL 245 (315)
T ss_dssp HHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTC-GGGCHHHHHHH
T ss_pred hhhhHHhHHHHHHHHHh--CCCchHHHHHHHHHHHhcC-hHHHHHHHHHH
Confidence 67888888888764 2334667777766665544 46666666554
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.96 E-value=6.4e-09 Score=98.56 Aligned_cols=201 Identities=12% Similarity=-0.026 Sum_probs=118.4
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHH
Q 004856 437 TIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAK 515 (727)
Q Consensus 437 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~ 515 (727)
++..+..++.+.|++++|...+...++.. +.+..++..+..+|.+.|++++|...|++.....| +..+|..+..+|..
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH
Confidence 33444455556666666666666665543 34556666777777777788877777777544344 45677788888888
Q ss_pred cCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC----H
Q 004856 516 HGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGH----M 590 (727)
Q Consensus 516 ~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----~ 590 (727)
.|++++|++.|++..+. .| +......+..++.+.+..+....+....... .+....+. ++..+..... .
T Consensus 118 ~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~ 191 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS---DKEQWGWN-IVEFYLGNISEQTLM 191 (259)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS---CCCSTHHH-HHHHHTTSSCHHHHH
T ss_pred HhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc---chhhhhhh-HHHHHHHHHHHHHHH
Confidence 88888888888888774 34 4444444445555555555555555544432 22222222 2222222222 2
Q ss_pred HHHHHHHHhC-CCCCCH-hhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHH
Q 004856 591 DEARELVKDM-PFKPDA-RVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYV 644 (727)
Q Consensus 591 ~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 644 (727)
+.+...+... ...|+. .+|..+...+...|++++|...++++++.+|++...|.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 192 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred HHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 2222222111 112322 35666667788889999999999999988887665443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.92 E-value=3.8e-09 Score=100.16 Aligned_cols=195 Identities=9% Similarity=0.038 Sum_probs=139.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHH
Q 004856 471 SVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTAC 548 (727)
Q Consensus 471 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~ 548 (727)
.++..+...|.+.|++++|...|++.....| +..+|+.+..+|.+.|++++|++.|++..+ +.| +..++..+..++
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHH--HHhhhhhhHHHHHHHH
Confidence 4556677889999999999999998544344 678999999999999999999999999998 456 477899999999
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhhHHHHHHHHH----HcCCHH
Q 004856 549 VNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPDARVWGPLLSACK----MHSETE 623 (727)
Q Consensus 549 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~----~~g~~~ 623 (727)
...|++++|...++...+. .+.+......+...+.+.+..+.+..+.... ...++...+.. +..+. ..+..+
T Consensus 116 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI-VEFYLGNISEQTLME 192 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHH-HHHHTTSSCHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhH-HHHHHHHHHHHHHHH
Confidence 9999999999999999875 2233444444455555666555554444433 12222222222 22221 122344
Q ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004856 624 LAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 624 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 670 (727)
.+...+.......|....++..++.+|...|++++|...+++.....
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 193 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 44444444445566667788999999999999999999999887653
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.90 E-value=2.5e-07 Score=91.66 Aligned_cols=260 Identities=8% Similarity=-0.056 Sum_probs=141.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCC----CCCC-HHHHHHHHHHHhcCCChHHHHHHHHHHHH----hCCC---chH
Q 004856 403 WSSMIKGYVTHDQSLEALRLFSEMKLEG----VEVD-FVTIINILPACVNIGALEHVKYLHGYSMK----LGLN---SLS 470 (727)
Q Consensus 403 ~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~----~~~~---~~~ 470 (727)
++.+...|...|++++|+..|++..... ..+. ...+..+...+...|++..+...+..... .+.. ...
T Consensus 54 ~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~ 133 (366)
T d1hz4a_ 54 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE 133 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHH
Confidence 3444445555555555555555443311 0011 12233334445555555555555444332 1111 112
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccCC------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC--CCCC----h
Q 004856 471 SVNTAIFISYAKCGCIEMAGELFDEEKID------SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSD--VRPD----L 538 (727)
Q Consensus 471 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~ 538 (727)
..+..+...+...|+++.+...+...... ......+..+...+...++..++...+.+..... .... .
T Consensus 134 ~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~ 213 (366)
T d1hz4a_ 134 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 213 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHH
Confidence 23444556666777777777766652211 1123345555566677777777777766554311 1111 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCH-hh
Q 004856 539 ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP--SQEHYASMVNLLGRAGHMDEARELVKDM-------PFKPDA-RV 608 (727)
Q Consensus 539 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~-~~ 608 (727)
..+..+...+...|++++|...++.......-.+ ....+..+...+...|++++|...++++ +..|+. ..
T Consensus 214 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 293 (366)
T d1hz4a_ 214 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRN 293 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHH
Confidence 2345556667777888888887776653311111 1234556777788888888888877765 333433 35
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---------cchHHHHHHHHHhcCChhHHHHH
Q 004856 609 WGPLLSACKMHSETELAELTAEKLISMEPEN---------AGNYVLLSNIYAAAGKWNGVAKM 662 (727)
Q Consensus 609 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~a~~~ 662 (727)
+..+...+...|+.++|...+++++++.+.. ...+..+...+...++.+++.+.
T Consensus 294 ~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 294 LLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 5556666888888888888888887754321 22334455566677777776553
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.90 E-value=2.9e-09 Score=105.35 Aligned_cols=232 Identities=7% Similarity=-0.083 Sum_probs=165.2
Q ss_pred hcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHH
Q 004856 412 THDQSLEALRLFSEMKLEGVEVD-FVTIINILPACVNIG--ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEM 488 (727)
Q Consensus 412 ~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 488 (727)
..|++++|+.++++..+. .|+ ...+.....++...+ +.+++...+..+.+.........+......+...|..++
T Consensus 85 ~~~~~~~al~~~~~~l~~--~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
T d1dcea1 85 SAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAE 162 (334)
T ss_dssp HHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHh--CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHH
Confidence 345567888888887765 343 344444444444444 577888888888776533333333445567778899999
Q ss_pred HHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 004856 489 AGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKES 567 (727)
Q Consensus 489 A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 567 (727)
|...++......| +...|+.+...+.+.|++++|...+.+..+ +.|+.. .+...+...+..+++...+......
T Consensus 163 Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~~ 237 (334)
T d1dcea1 163 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN--VLLKEL---ELVQNAFFTDPNDQSAWFYHRWLLG 237 (334)
T ss_dssp HHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH--HHHHHH---HHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHH--hHHHHH---HHHHHHHHhcchhHHHHHHHHHHHh
Confidence 9999998665555 678899999999999999888776665544 223222 2333445567777788888777653
Q ss_pred cCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHH
Q 004856 568 YGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPD-ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVL 645 (727)
Q Consensus 568 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 645 (727)
-+++...+..++..+...|+.++|...+.+. ...|+ ..+|..+...+...|+.++|+..++++++++|.+...|..
T Consensus 238 --~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~ 315 (334)
T d1dcea1 238 --RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 315 (334)
T ss_dssp --CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred --CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHH
Confidence 3444556677788888889999999999887 55564 4567777778999999999999999999999988888888
Q ss_pred HHHHHHh
Q 004856 646 LSNIYAA 652 (727)
Q Consensus 646 l~~~~~~ 652 (727)
|...+.-
T Consensus 316 L~~~~~~ 322 (334)
T d1dcea1 316 LRSKFLL 322 (334)
T ss_dssp HHHHHHH
T ss_pred HHHHHhH
Confidence 8766653
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.82 E-value=4.3e-07 Score=87.98 Aligned_cols=183 Identities=9% Similarity=0.115 Sum_probs=144.6
Q ss_pred cCCHHHHHHHHHhccCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-C-hHHHHHHHHHHHhcCCHHHHH
Q 004856 483 CGCIEMAGELFDEEKID--SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-D-LITFLGLLTACVNAGLVEEGR 558 (727)
Q Consensus 483 ~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~-~~t~~~ll~~~~~~g~~~~a~ 558 (727)
.+..++|..+|++.... +.+...|...+..+.+.|+.++|..+|+++++. .| + ...|...+..+.+.|..+.|.
T Consensus 77 ~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~--~~~~~~~~w~~~~~~~~~~~~~~~ar 154 (308)
T d2onda1 77 KLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGR 154 (308)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHH
T ss_pred ccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH--hcCChHHHHHHHHHHHHHcCChHHHH
Confidence 34567888888884432 336678999999999999999999999999874 44 3 446889999999999999999
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHH-HhcCCHHHHHHHHHhC-C-CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004856 559 IIFKEMKESYGYEPSQEHYASMVNLL-GRAGHMDEARELVKDM-P-FKPDARVWGPLLSACKMHSETELAELTAEKLISM 635 (727)
Q Consensus 559 ~~~~~~~~~~~~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 635 (727)
.+|+.+.+. .+.+...|...+... ...|+.+.|..+|+.+ . ...+...|...+..+...|+.+.|..+|++++..
T Consensus 155 ~i~~~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~ 232 (308)
T d2onda1 155 MIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHh--CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 999999854 233445555555443 3468999999999988 2 2335678999999999999999999999999997
Q ss_pred CCCCcc----hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 636 EPENAG----NYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 636 ~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
.|.++. .|...+..-...|+.+.+..+.+++.+.
T Consensus 233 ~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 765543 5677777777889999999999988765
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.74 E-value=4.1e-08 Score=96.81 Aligned_cols=249 Identities=7% Similarity=-0.103 Sum_probs=176.0
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHhc-------CCChHHHHHHHHHHHHhCCCchHhHHHHHHH
Q 004856 410 YVTHDQSLEALRLFSEMKLEGVEVDFVTI----INILPACVN-------IGALEHVKYLHGYSMKLGLNSLSSVNTAIFI 478 (727)
Q Consensus 410 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~----~~ll~a~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 478 (727)
....+..++|++++++..+. .|+..+. ..++..... .+.++++..+++.+.+.. +.+...+..+..
T Consensus 39 ~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~ 115 (334)
T d1dcea1 39 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 115 (334)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhH
Confidence 33344457888888888764 5665432 122333333 344677888888887765 445556666655
Q ss_pred HHHhcC--CHHHHHHHHHhccCC-CCCHHHHHHH-HHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCC
Q 004856 479 SYAKCG--CIEMAGELFDEEKID-SKDIITWNSM-ISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGL 553 (727)
Q Consensus 479 ~~~~~g--~~~~A~~~~~~~~~~-~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~ 553 (727)
++...+ ++++|...+++.... +++...|... ...+...+.+++|+..+++.++. .| +...|..+..++...|+
T Consensus 116 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~--~p~~~~a~~~l~~~~~~~~~ 193 (334)
T d1dcea1 116 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHP 193 (334)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--TCCCHHHHHHHHHHHHHHSC
T ss_pred HHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcC
Confidence 666555 588999988885433 3456666544 45667789999999999999884 45 67788889999999999
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 004856 554 VEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFK-PDARVWGPLLSACKMHSETELAELTAEK 631 (727)
Q Consensus 554 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 631 (727)
+++|...++..... .|+. ..+...+...+..+++...+.+. ... ++...+..+...+...++.++|...+.+
T Consensus 194 ~~~A~~~~~~~~~~---~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 267 (334)
T d1dcea1 194 QPDSGPQGRLPENV---LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQE 267 (334)
T ss_dssp CCCSSSCCSSCHHH---HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHh---HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 88877666555432 1221 12333445566667777776665 223 3445666667778888999999999999
Q ss_pred HHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 632 LISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 632 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
+++.+|.+..++..++.+|...|++++|.+++++..+.
T Consensus 268 ~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 268 LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988765
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=4.2e-07 Score=73.32 Aligned_cols=87 Identities=11% Similarity=0.132 Sum_probs=45.1
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHH
Q 004856 582 NLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGV 659 (727)
Q Consensus 582 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 659 (727)
..+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..++.++...|++++|
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A 90 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEA 90 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHH
Confidence 3444455555555555544 2223 3334444444555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHh
Q 004856 660 AKMRTFLRD 668 (727)
Q Consensus 660 ~~~~~~m~~ 668 (727)
+..+++..+
T Consensus 91 ~~~~~~a~~ 99 (117)
T d1elwa_ 91 KRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 555555443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=1.2e-06 Score=77.71 Aligned_cols=139 Identities=14% Similarity=-0.036 Sum_probs=95.8
Q ss_pred HHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHH
Q 004856 478 ISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEE 556 (727)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~ 556 (727)
..+...|+++.|.+.|.++. .|+...|..+..+|...|++++|++.|++.++ +.| +...|..+..++.+.|++++
T Consensus 13 ~~~~~~~d~~~Al~~~~~i~--~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHCCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHHHHHHHHHhhccHHH
Confidence 34677888999999888876 67888888888888999999999999999888 456 46788888888889999999
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004856 557 GRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPD-ARVWGPLLSACKMHSETELAELTAEKLISM 635 (727)
Q Consensus 557 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 635 (727)
|...|++.... .+++... .+...|. ..+++ ..++..+..++...|++++|.+.+++++++
T Consensus 89 A~~~~~kAl~~--~~~n~~~------~~~~~~~-----------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 89 AIKDLKEALIQ--LRGNQLI------DYKILGL-----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHHT--TTTCSEE------ECGGGTB-----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHh--CccCchH------HHHHhhh-----------hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 98888887653 2222100 0000000 00111 123444555677788888888888888877
Q ss_pred CCCC
Q 004856 636 EPEN 639 (727)
Q Consensus 636 ~p~~ 639 (727)
.|..
T Consensus 150 ~~~~ 153 (192)
T d1hh8a_ 150 KSEP 153 (192)
T ss_dssp CCSG
T ss_pred CCCc
Confidence 7754
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.51 E-value=2.4e-07 Score=83.49 Aligned_cols=116 Identities=8% Similarity=-0.106 Sum_probs=85.7
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HhhHHHHH
Q 004856 536 PDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPD-ARVWGPLL 613 (727)
Q Consensus 536 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll 613 (727)
|+...+......+.+.|++++|+..|+++.+. .+.+...|..+..+|.+.|++++|+..++++ .+.|+ ..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 67777777888888888888888888887764 2344667888888888888888888888877 56664 45677777
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhc
Q 004856 614 SACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAA 653 (727)
Q Consensus 614 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 653 (727)
.++...|++++|+..++++++++|++...+...+..+...
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~ 119 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 119 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 7788888888888888888887776655554444444433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=8e-07 Score=71.58 Aligned_cols=105 Identities=16% Similarity=0.105 Sum_probs=79.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCC
Q 004856 544 LLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSE 621 (727)
Q Consensus 544 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 621 (727)
-...+...|++++|+..|+...+. -+.+...|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence 355667778888888888877754 2334667777788888888888888888776 3344 55677778888889999
Q ss_pred HHHHHHHHHHHHccCCCCcchHHHHHHHH
Q 004856 622 TELAELTAEKLISMEPENAGNYVLLSNIY 650 (727)
Q Consensus 622 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 650 (727)
+++|+..++++++++|+++.++..+.++-
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 99999999999999998888887776653
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=2.1e-06 Score=73.60 Aligned_cols=118 Identities=8% Similarity=-0.041 Sum_probs=89.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcC
Q 004856 543 GLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHS 620 (727)
Q Consensus 543 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 620 (727)
.....|.+.|++++|+..|+++.+. -+-+...|..+..+|...|++++|.+.|+++ ...| +..+|..+..++...|
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 3455677888888888888888764 2334667788888888888888888888877 4455 4467888888899999
Q ss_pred CHHHHHHHHHHHHccCCCCcchHHHHHHHH--HhcCChhHHHHH
Q 004856 621 ETELAELTAEKLISMEPENAGNYVLLSNIY--AAAGKWNGVAKM 662 (727)
Q Consensus 621 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~~ 662 (727)
++++|+..+++++.++|+++.++..+..+. ...+.+++|...
T Consensus 93 ~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999888887776553 344556666554
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=1.6e-06 Score=74.29 Aligned_cols=92 Identities=15% Similarity=0.095 Sum_probs=82.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCC
Q 004856 578 ASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGK 655 (727)
Q Consensus 578 ~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 655 (727)
......|.+.|++++|+..|++. ...| +...|..+...+...|++++|+..++++++++|.+..+|..++.+|...|+
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 34467788999999999999988 4556 556787888889999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhC
Q 004856 656 WNGVAKMRTFLRDR 669 (727)
Q Consensus 656 ~~~a~~~~~~m~~~ 669 (727)
+++|...+++....
T Consensus 94 ~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 94 FRAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999988765
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.39 E-value=8.1e-07 Score=79.84 Aligned_cols=96 Identities=7% Similarity=-0.040 Sum_probs=85.2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hhHH
Q 004856 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS-QEHY 577 (727)
Q Consensus 500 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~ 577 (727)
.|+...+......|.+.|++++|+..|++.++. .| +...|..+..+|.+.|++++|+..|+.+. .+.|+ ...|
T Consensus 1 ~~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al---~l~p~~~~a~ 75 (201)
T d2c2la1 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRAL---ELDGQSVKAH 75 (201)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSCTTCHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHH---HhCCCcHHHH
Confidence 367777778889999999999999999999984 46 67889999999999999999999999998 45675 6789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC
Q 004856 578 ASMVNLLGRAGHMDEARELVKDM 600 (727)
Q Consensus 578 ~~li~~~~~~g~~~~A~~~~~~~ 600 (727)
..+..+|.+.|++++|...|+++
T Consensus 76 ~~lg~~~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 76 FFLGQCQLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999999986
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=3.6e-06 Score=74.50 Aligned_cols=117 Identities=10% Similarity=0.017 Sum_probs=65.4
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHH
Q 004856 549 VNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAE 626 (727)
Q Consensus 549 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~ 626 (727)
...|+++.|++.|+.+ .+|+..+|..+..+|.+.|++++|++.|++. .+.| +...|..+..++.+.|++++|+
T Consensus 16 ~~~~d~~~Al~~~~~i-----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 16 ADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHCCCHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHH
Confidence 3444444444444322 1233444444444444444444444444444 2233 2334444555555566666666
Q ss_pred HHHHHHHccCCCC----------------cchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004856 627 LTAEKLISMEPEN----------------AGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 627 ~~~~~~~~~~p~~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 670 (727)
..++++++..|.+ ..++..++.+|.+.|++++|.+.+....+..
T Consensus 91 ~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 91 KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 6666655543322 2456788999999999999999998876653
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.37 E-value=2.9e-06 Score=81.11 Aligned_cols=191 Identities=12% Similarity=-0.020 Sum_probs=127.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCC---CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CC--ChHHHH
Q 004856 475 AIFISYAKCGCIEMAGELFDEEKID---SKD----IITWNSMISAYAKHGDWSQCFKLYTQMKQSDV---RP--DLITFL 542 (727)
Q Consensus 475 ~li~~~~~~g~~~~A~~~~~~~~~~---~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p--~~~t~~ 542 (727)
-....|...|++++|.+.|.+.... ..+ ..+|+.+..+|.+.|++++|++.+++..+.-. .+ ...++.
T Consensus 42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 121 (290)
T d1qqea_ 42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF 121 (290)
T ss_dssp HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHH
Confidence 3456788888888888888863211 112 35788889999999999999999998765211 11 134566
Q ss_pred HHHHHHHh-cCCHHHHHHHHHHhHHhc---CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH--------hh
Q 004856 543 GLLTACVN-AGLVEEGRIIFKEMKESY---GYEPS-QEHYASMVNLLGRAGHMDEARELVKDM-PFKPDA--------RV 608 (727)
Q Consensus 543 ~ll~~~~~-~g~~~~a~~~~~~~~~~~---~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~--------~~ 608 (727)
.+...|.. .|++++|.+.+++..+.+ +..+. ..++..+...|.+.|++++|.+.+++. ...|+. ..
T Consensus 122 ~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~ 201 (290)
T d1qqea_ 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (290)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHH
Confidence 66767754 699999999998876431 11221 346788899999999999999999886 111111 12
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcc-----hHHHHHHHHHh--cCChhHHHHHHHH
Q 004856 609 WGPLLSACKMHSETELAELTAEKLISMEPENAG-----NYVLLSNIYAA--AGKWNGVAKMRTF 665 (727)
Q Consensus 609 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----~~~~l~~~~~~--~g~~~~a~~~~~~ 665 (727)
+...+..+...|+.+.|...++++.+++|.... ....++.++.. .+.+++|+..++.
T Consensus 202 ~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~ 265 (290)
T d1qqea_ 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 233344467889999999999999999885433 23455556555 3457788877753
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.36 E-value=5.3e-07 Score=71.96 Aligned_cols=89 Identities=11% Similarity=0.060 Sum_probs=77.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCC
Q 004856 578 ASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGK 655 (727)
Q Consensus 578 ~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 655 (727)
-.+...+.+.|++++|...+++. ...| +...|..+..++.+.|++++|+..++++++++|+++.++..++.+|...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 34567778889999999988887 4456 466788888889999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHH
Q 004856 656 WNGVAKMRTFL 666 (727)
Q Consensus 656 ~~~a~~~~~~m 666 (727)
+++|.+.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999875
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=3.2e-06 Score=68.11 Aligned_cols=107 Identities=18% Similarity=0.033 Sum_probs=81.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC---HHHHHHHHHhC-CCCCCH---hhHHHHHH
Q 004856 542 LGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGH---MDEARELVKDM-PFKPDA---RVWGPLLS 614 (727)
Q Consensus 542 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~-~~~p~~---~~~~~ll~ 614 (727)
..+++.+...+++++|++.|+..... -+.+..++..+..++.+.++ +++|+++++++ ...|+. .+|..+..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 35677788888999999999988864 23456788888888887554 45688888886 444543 25667777
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHH
Q 004856 615 ACKMHSETELAELTAEKLISMEPENAGNYVLLSNIY 650 (727)
Q Consensus 615 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 650 (727)
+|.+.|++++|+..++++++++|++..+...+..+.
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~ 116 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 799999999999999999999998887766655443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.25 E-value=1.3e-05 Score=76.30 Aligned_cols=206 Identities=9% Similarity=-0.023 Sum_probs=112.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHH
Q 004856 402 SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYA 481 (727)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 481 (727)
.|......|...|++++|.+.|.+..+.. ...++. .....+|..+..+|.
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~---------------~~~~~~---------------~~~a~~~~~~g~~y~ 88 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQ---------------KKAGNE---------------DEAGNTYVEAYKCFK 88 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHH---------------HHTTCH---------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHH---------------HHcCCC---------------HHHHHHHHHHHHHHH
Confidence 37777777777777777777777765420 000000 001223334444455
Q ss_pred hcCCHHHHHHHHHhccCC---CC----CHHHHHHHHHHHHH-cCChHHHHHHHHHHHHC----CCCCC-hHHHHHHHHHH
Q 004856 482 KCGCIEMAGELFDEEKID---SK----DIITWNSMISAYAK-HGDWSQCFKLYTQMKQS----DVRPD-LITFLGLLTAC 548 (727)
Q Consensus 482 ~~g~~~~A~~~~~~~~~~---~~----~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~~~ 548 (727)
+.|++++|.+.+++.... .. ....+..+...|.. .|++++|++.+++..+. +..+. ..++..+...+
T Consensus 89 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~ 168 (290)
T d1qqea_ 89 SGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLK 168 (290)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHH
Confidence 555555555554431100 11 12344455555544 58888888888776541 11111 34567778888
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC------HhhHHHHHHHH
Q 004856 549 VNAGLVEEGRIIFKEMKESYGYEPS-----QEHYASMVNLLGRAGHMDEARELVKDM-PFKPD------ARVWGPLLSAC 616 (727)
Q Consensus 549 ~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~------~~~~~~ll~~~ 616 (727)
...|++++|...|+++.......+. ...+...+..+...|+++.|.+.+++. .+.|. ......++.++
T Consensus 169 ~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~ 248 (290)
T d1qqea_ 169 ALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAV 248 (290)
T ss_dssp HHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHH
T ss_pred HHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHH
Confidence 8888888888888887754211111 122344555666778888888888887 33332 12334455554
Q ss_pred HH--cCCHHHHHHHHHHHHccCC
Q 004856 617 KM--HSETELAELTAEKLISMEP 637 (727)
Q Consensus 617 ~~--~g~~~~A~~~~~~~~~~~p 637 (727)
.. .+.+++|+..|+++.+++|
T Consensus 249 ~~~d~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 249 NEGDSEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp HTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HhcCHHHHHHHHHHHHHHhhcCH
Confidence 43 2347777777776666654
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=8.3e-06 Score=70.49 Aligned_cols=84 Identities=12% Similarity=0.027 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhc
Q 004856 576 HYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAA 653 (727)
Q Consensus 576 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 653 (727)
+|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++++|+++.+...+..+....
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 143 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI 143 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 5677888899999999999999887 4556 5667888888899999999999999999999999999999888887766
Q ss_pred CChhHH
Q 004856 654 GKWNGV 659 (727)
Q Consensus 654 g~~~~a 659 (727)
+...+.
T Consensus 144 ~~~~~~ 149 (170)
T d1p5qa1 144 RRQLAR 149 (170)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.16 E-value=1.6e-05 Score=68.57 Aligned_cols=111 Identities=12% Similarity=0.019 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc
Q 004856 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH 619 (727)
Q Consensus 540 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~ 619 (727)
.+......+.+.|++++|+..|++........+....- .......+ ...+|+.+..+|.+.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~-----------~~~~~~~~--------~~~~~~nla~~y~k~ 75 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNE-----------EAQKAQAL--------RLASHLNLAMCHLKL 75 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSH-----------HHHHHHHH--------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchH-----------HHhhhchh--------HHHHHHHHHHHHHhh
Confidence 34455566777777888877777776542211111000 00000000 113556667778999
Q ss_pred CCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 620 SETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 620 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
|++++|+..++++++++|+++.++..++.+|...|++++|...+++..+.
T Consensus 76 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 76 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999988775
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.10 E-value=2.6e-05 Score=65.86 Aligned_cols=109 Identities=10% Similarity=-0.036 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 004856 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS---QEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSAC 616 (727)
Q Consensus 540 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~ 616 (727)
.+..-...+.+.|++++|+..|+.+.......++ ........ .....++..+..++
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~Nla~~~ 77 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKK---------------------NIEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHH---------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhh---------------------hHHHHHHhhHHHHH
Confidence 3445556667777777777777776643111111 00000000 00123556667778
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 617 KMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 617 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
.+.|++++|+..++++++++|.+..+|..++.+|...|++++|...+++..+.
T Consensus 78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999887665
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.02 E-value=0.0023 Score=59.21 Aligned_cols=225 Identities=8% Similarity=-0.062 Sum_probs=129.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----CCChHHHHHHHHHHHHhCCCchHhHHH
Q 004856 399 TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN----IGALEHVKYLHGYSMKLGLNSLSSVNT 474 (727)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 474 (727)
|+..+..|...+.+.+++++|++.|++..+.| +...+..+-..+.. ..+...+..++....+.+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--------- 68 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 68 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---------
Confidence 45566677777778888888888888887765 33333333333332 334455555544444433
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 004856 475 AIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK----HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN 550 (727)
Q Consensus 475 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 550 (727)
+...+..+...+.. .++.+.|...+++..+.|. ......+...+..
T Consensus 69 ---------------------------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~ 118 (265)
T d1ouva_ 69 ---------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHD 118 (265)
T ss_dssp ---------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHH
T ss_pred ---------------------------ccchhhccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccC
Confidence 22223333222222 3455666666666665442 1122222222221
Q ss_pred ----cCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----
Q 004856 551 ----AGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR----AGHMDEARELVKDMPFKPDARVWGPLLSACKM---- 618 (727)
Q Consensus 551 ----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~---- 618 (727)
......+...+...... .+...+..|...|.. ..+...+..+++...-..+......+...+..
T Consensus 119 ~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~ 194 (265)
T d1ouva_ 119 GKVVTRDFKKAVEYFTKACDL----NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGA 194 (265)
T ss_dssp CSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred CCcccchhHHHHHHhhhhhcc----cccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCccc
Confidence 33455555555554432 344555556666554 34566666666655222344455455444443
Q ss_pred cCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 004856 619 HSETELAELTAEKLISMEPENAGNYVLLSNIYAA----AGKWNGVAKMRTFLRDRGL 671 (727)
Q Consensus 619 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 671 (727)
..+.+.|+..|+++.+.+ ++.++..|+.+|.. ..+.++|.+++++..+.|-
T Consensus 195 ~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 195 TKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred ccchhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 568999999999998875 47788889988876 3478889999998877764
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.00 E-value=4.3e-05 Score=65.70 Aligned_cols=92 Identities=13% Similarity=0.048 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhc
Q 004856 576 HYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAA 653 (727)
Q Consensus 576 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 653 (727)
+|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++++|+++.+...+..+....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 5666788889999999999999887 4444 5667888888899999999999999999999999999988888887766
Q ss_pred CChhH-HHHHHHHHH
Q 004856 654 GKWNG-VAKMRTFLR 667 (727)
Q Consensus 654 g~~~~-a~~~~~~m~ 667 (727)
+...+ ..+.+..|-
T Consensus 146 ~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 146 KEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHH
Confidence 65543 444444443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.98 E-value=1.4e-05 Score=64.27 Aligned_cols=92 Identities=8% Similarity=-0.055 Sum_probs=75.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHc---CCHHHHHHHHHHHHccCCCC--cchHHHHHHHH
Q 004856 578 ASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMH---SETELAELTAEKLISMEPEN--AGNYVLLSNIY 650 (727)
Q Consensus 578 ~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~ 650 (727)
..+++.+...+++++|++.|++. ...| +..++..+..++.+. ++.++|+.+++++++.+|.+ ..++..|+.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 46788888999999999999988 4455 556777777777654 45667999999999988754 34788999999
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 004856 651 AAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 651 ~~~g~~~~a~~~~~~m~~~ 669 (727)
.+.|++++|+++++++.+.
T Consensus 83 ~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHh
Confidence 9999999999999998776
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.97 E-value=3.3e-05 Score=66.54 Aligned_cols=110 Identities=6% Similarity=-0.031 Sum_probs=72.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHc
Q 004856 541 FLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKP-DARVWGPLLSACKMH 619 (727)
Q Consensus 541 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~ 619 (727)
+......+...|++++|+..|+++.+. .+. ........+. ....| ....|..+..++.+.
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~---~~~----------~~~~~~~~~~------~~~~~~~~~~~~nla~~~~~~ 90 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRY---VEG----------SRAAAEDADG------AKLQPVALSCVLNIGACKLKM 90 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---HHH----------HHHHSCHHHH------GGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh---hhh----------hhhhhhhHHH------HHhChhhHHHHHHHHHHHHhh
Confidence 445555667777888887777766532 000 0000000000 01123 233556666668888
Q ss_pred CCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 620 SETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 620 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
|++++|+..++++++++|+++.+|..++.+|...|++++|++.+++..+.
T Consensus 91 ~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 91 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888887765
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.96 E-value=3e-05 Score=66.85 Aligned_cols=132 Identities=12% Similarity=0.118 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHH
Q 004856 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP-SQEHYASMVNL 583 (727)
Q Consensus 505 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~ 583 (727)
.+......+...|++++|++.|.+.++. . ..........+.. .+.| ....|..+..+
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~--~----------~~~~~~~~~~~~~----------~~~~~~~~~~~nla~~ 86 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRY--V----------EGSRAAAEDADGA----------KLQPVALSCVLNIGAC 86 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--H----------HHHHHHSCHHHHG----------GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--h----------hhhhhhhhhHHHH----------HhChhhHHHHHHHHHH
Confidence 3445566788999999999999887641 0 1111111111110 1122 34577888899
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhH
Q 004856 584 LGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNG 658 (727)
Q Consensus 584 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 658 (727)
|.+.|++++|+..++++ .+.| +...|..+..++...|++++|+..++++++++|++..+...+..+..+.....+
T Consensus 87 ~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 87 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988 6666 456888888889999999999999999999999999988888877655544433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.95 E-value=8.6e-05 Score=63.71 Aligned_cols=62 Identities=8% Similarity=-0.028 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 608 VWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 608 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
.|..+..++.+.|++++|+..++++++++|.+..+|..++.+|...|++++|...++++.+.
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44556666899999999999999999999999999999999999999999999999988765
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=1.1e-05 Score=65.76 Aligned_cols=92 Identities=14% Similarity=0.094 Sum_probs=72.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcc-------hHHHHH
Q 004856 577 YASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAG-------NYVLLS 647 (727)
Q Consensus 577 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~l~ 647 (727)
+..+.+.+.+.|++++|++.|++. ...| +...|..+..+|.+.|++++|+..++++++++|+++. +|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 345677788888888888888877 4445 4567777777899999999999999999998887665 455667
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 004856 648 NIYAAAGKWNGVAKMRTFLRD 668 (727)
Q Consensus 648 ~~~~~~g~~~~a~~~~~~m~~ 668 (727)
.++...+++++|++.+++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 778888999999999987654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.93 E-value=0.0052 Score=58.16 Aligned_cols=272 Identities=11% Similarity=0.055 Sum_probs=145.3
Q ss_pred hHHHHHhhcCCChHHHHHHHhcCCCCCeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChH
Q 004856 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIE 351 (727)
Q Consensus 272 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 351 (727)
..+.+.|.+.|.++.|..++..+. -|..++..+.+.++++.|.+.+.+. -+..+|..+..+|.+.....
T Consensus 18 ~~i~~~c~~~~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e~~ 86 (336)
T d1b89a_ 18 QQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFR 86 (336)
T ss_dssp -----------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcHHH
Confidence 444555666777777777776554 3666777777777777777776544 14556666677766655443
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004856 352 WGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK---TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKL 428 (727)
Q Consensus 352 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 428 (727)
.+ .+.......+......++..|-..|.+++...+++... ..+...++-++..|++.+ .++.++.++....
T Consensus 87 la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s~ 160 (336)
T d1b89a_ 87 LA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELFWS 160 (336)
T ss_dssp HH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHST
T ss_pred HH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhccc
Confidence 32 11222233344445677888888888888888888643 335567788888888764 3444444433311
Q ss_pred CCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHH
Q 004856 429 EGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNS 508 (727)
Q Consensus 429 ~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 508 (727)
.-| ...++..|.+.+.+++ ++..|.+.|++++|..+.-+-. ++......
T Consensus 161 ---~y~---~~k~~~~c~~~~l~~e----------------------lv~Ly~~~~~~~~A~~~~i~~~---~~~~~~~~ 209 (336)
T d1b89a_ 161 ---RVN---IPKVLRAAEQAHLWAE----------------------LVFLYDKYEEYDNAIITMMNHP---TDAWKEGQ 209 (336)
T ss_dssp ---TSC---HHHHHHHHHTTTCHHH----------------------HHHHHHHTTCHHHHHHHHHHST---TTTCCHHH
T ss_pred ---cCC---HHHHHHHHHHcCChHH----------------------HHHHHHhcCCHHHHHHHHHHcc---hhhhhHHH
Confidence 112 2234455555554433 4455777788887776665432 22223334
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHH-------------hcCCHHHHHHHHHHhHHhcCCCCChh
Q 004856 509 MISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACV-------------NAGLVEEGRIIFKEMKESYGYEPSQE 575 (727)
Q Consensus 509 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-------------~~g~~~~a~~~~~~~~~~~~~~p~~~ 575 (727)
.+..+.+..+.+...++.....+. .|+. .+.++.... +.+++.....+++...+. + +..
T Consensus 210 f~e~~~k~~N~e~~~~~i~~yL~~--~p~~--i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~-n---~~~ 281 (336)
T d1b89a_ 210 FKDIITKVANVELYYRAIQFYLEF--KPLL--LNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNH-N---NKS 281 (336)
T ss_dssp HHHHHHHCSSTHHHHHHHHHHHHH--CGGG--HHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTT-C---CHH
T ss_pred HHHHHHccCChHHHHHHHHHHHHc--CHHH--HHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHc-C---hHH
Confidence 556666777766666665555542 3432 233333333 334444444444333322 2 234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHh
Q 004856 576 HYASMVNLLGRAGHMDEARELVKD 599 (727)
Q Consensus 576 ~~~~li~~~~~~g~~~~A~~~~~~ 599 (727)
+.++|.+.|...++++.-++.++.
T Consensus 282 vn~al~~lyie~~d~~~l~~~i~~ 305 (336)
T d1b89a_ 282 VNESLNNLFITEEDYQALRTSIDA 305 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCcchhHHHHHHHHH
Confidence 566666666666665554444443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.91 E-value=6.8e-05 Score=63.18 Aligned_cols=128 Identities=9% Similarity=-0.007 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 004856 503 IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582 (727)
Q Consensus 503 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 582 (727)
...+......+.+.|++.+|+..|.+.+.. .|..... . +... ..... .....+|..+..
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~~~-----------~-~~~~--~~~~~-----~~~~~~~~Nla~ 75 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEW-----------D-DQIL--LDKKK-----NIEISCNLNLAT 75 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTC-----------C-CHHH--HHHHH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchhhh-----------h-hHHH--HHhhh-----hHHHHHHhhHHH
Confidence 345667778899999999999999998863 2211100 0 0000 00000 012246777888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHH
Q 004856 583 LLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYA 651 (727)
Q Consensus 583 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 651 (727)
+|.+.|++++|++.++++ ...| +..+|..+..++...|++++|+..++++++++|++..+...+..+..
T Consensus 76 ~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 76 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999999887 4556 56788888999999999999999999999999999888777665543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.82 E-value=0.0077 Score=55.39 Aligned_cols=96 Identities=8% Similarity=-0.094 Sum_probs=67.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-ChhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004856 368 QVSVHNSLIDMYCECEDLNCARKIFDSVKTK-TVVSWSSMIKGYVT----HDQSLEALRLFSEMKLEGVEVDFVTIINIL 442 (727)
Q Consensus 368 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 442 (727)
|+..+..|...+.+.|++++|.+.|++..+. |..++..|...|.. ..+...|...+......+. |. ....+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~-~~--a~~~l~ 77 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY-SN--GCHLLG 77 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-HH--HHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc-cc--hhhccc
Confidence 3455677778888999999999999987644 66677777777776 6688899999988887652 22 222222
Q ss_pred HH----HhcCCChHHHHHHHHHHHHhCC
Q 004856 443 PA----CVNIGALEHVKYLHGYSMKLGL 466 (727)
Q Consensus 443 ~a----~~~~~~~~~a~~~~~~~~~~~~ 466 (727)
.. +....+.+.+...+....+.|.
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~ 105 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKY 105 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred cccccccccchhhHHHHHHHhhhhhhhh
Confidence 22 2234567778777777777664
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.79 E-value=0.0001 Score=58.10 Aligned_cols=87 Identities=8% Similarity=-0.048 Sum_probs=54.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 004856 509 MISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA 587 (727)
Q Consensus 509 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 587 (727)
+...+.+.|++++|+..|++.++. .| +...|..+..++.+.|++++|+..++...+. .+.+...+..+...|...
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhccccccccc--ccccccchHHHHHHHHHC
Confidence 344556667777777777776663 34 4556666666677777777777777666643 122355666666666666
Q ss_pred CCHHHHHHHHHh
Q 004856 588 GHMDEARELVKD 599 (727)
Q Consensus 588 g~~~~A~~~~~~ 599 (727)
|++++|.+.+++
T Consensus 98 g~~~~A~~~l~~ 109 (112)
T d1hxia_ 98 HNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 666666666654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.77 E-value=0.017 Score=54.42 Aligned_cols=247 Identities=12% Similarity=0.080 Sum_probs=123.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCh
Q 004856 372 HNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451 (727)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 451 (727)
|..++..|.+.++++.|.+++.+. .+..+|..+...+.+.....-| .+.......+......++..|...|.+
T Consensus 43 ~~rl~~~~v~l~~~~~avd~~~k~--~~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~ 115 (336)
T d1b89a_ 43 FGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYF 115 (336)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHc--CCHHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCCh
Confidence 344555555555666555555433 2344555555555555444322 122222333444445555666666666
Q ss_pred HHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCH----------HHHHHHHHHHHHcCChHH
Q 004856 452 EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI----------ITWNSMISAYAKHGDWSQ 521 (727)
Q Consensus 452 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----------~~~~~li~~~~~~g~~~~ 521 (727)
++...++...... -..+...++-++.+|++.+. ++-.+.+..... .-|. ..|.-++-.|.+.|++++
T Consensus 116 e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~kl~e~l~~~s~-~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~ 192 (336)
T d1b89a_ 116 EELITMLEAALGL-ERAHMGMFTELAILYSKFKP-QKMREHLELFWS-RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 192 (336)
T ss_dssp HHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-HHHHHHHHHHST-TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-HHHHHHHHhccc-cCCHHHHHHHHHHcCChHHHHHHHHhcCCHHH
Confidence 6665555554322 13344455666666665442 333333333221 1111 124555566666666666
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 004856 522 CFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601 (727)
Q Consensus 522 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 601 (727)
|..+. .+ -.|+..-....+..+.+..+.+...++.....+. .| ...+.|+......-+..+..+.+++-
T Consensus 193 A~~~~---i~--~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~---~p--~~i~~lL~~v~~~~d~~r~V~~~~k~- 261 (336)
T d1b89a_ 193 AIITM---MN--HPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF---KP--LLLNDLLMVLSPRLDHTRAVNYFSKV- 261 (336)
T ss_dssp HHHHH---HH--STTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH---CG--GGHHHHHHHHGGGCCHHHHHHHHHHT-
T ss_pred HHHHH---HH--cchhhhhHHHHHHHHHccCChHHHHHHHHHHHHc---CH--HHHHHHHHHhccCCCHHHHHHHHHhc-
Confidence 65442 22 1334434445566666777766666665555543 23 34455666666666666666666554
Q ss_pred CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHH
Q 004856 602 FKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGV 659 (727)
Q Consensus 602 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 659 (727)
+++......++...+.+ +......|..+|...++++.-
T Consensus 262 ------------------~~l~li~p~Le~v~~~n--~~~vn~al~~lyie~~d~~~l 299 (336)
T d1b89a_ 262 ------------------KQLPLVKPYLRSVQNHN--NKSVNESLNNLFITEEDYQAL 299 (336)
T ss_dssp ------------------TCTTTTHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHH
T ss_pred ------------------CCcHHHHHHHHHHHHcC--hHHHHHHHHHHHhCcchhHHH
Confidence 23333334444433322 334566667777777765443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.70 E-value=6.7e-06 Score=85.07 Aligned_cols=111 Identities=6% Similarity=-0.065 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-hhHHHHHHH
Q 004856 538 LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPDA-RVWGPLLSA 615 (727)
Q Consensus 538 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~ 615 (727)
...+..+...+.+.|+.++|...++..... .| ...+..+.+.+...|++++|...++++ ...|+. ..|+.|...
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~ 195 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSY---IC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAIL 195 (497)
T ss_dssp -----------------------CCHHHHH---HH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHH
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHhCC---CH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 334444555555555555555554443321 11 124445555555555555555555555 334432 345555555
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHh
Q 004856 616 CKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAA 652 (727)
Q Consensus 616 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 652 (727)
+...|+..+|+..|.+++..+|+.+.++..|..++.+
T Consensus 196 ~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 196 ASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555554443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.63 E-value=0.00019 Score=61.85 Aligned_cols=116 Identities=8% Similarity=-0.054 Sum_probs=81.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC
Q 004856 541 FLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHS 620 (727)
Q Consensus 541 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g 620 (727)
...........|++++|.+.|......+.-.+-... ...........-++.. ....+..+...+...|
T Consensus 14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~--------~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g 81 (179)
T d2ff4a2 14 EKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDL--------RDFQFVEPFATALVED----KVLAHTAKAEAEIACG 81 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG--------TTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccC--------cchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCC
Confidence 334455677889999999999988854321111000 0000111111111110 2346777888899999
Q ss_pred CHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004856 621 ETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRD 668 (727)
Q Consensus 621 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 668 (727)
++++|+..++++++.+|.+...|..++.+|...|++++|.+.|+++..
T Consensus 82 ~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 82 RASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998744
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.54 E-value=0.00051 Score=55.47 Aligned_cols=59 Identities=15% Similarity=0.197 Sum_probs=37.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 004856 506 WNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKE 566 (727)
Q Consensus 506 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 566 (727)
+..+...|.+.|++++|+..|.+.++. .| +...+..+..+|.+.|++++|+..++.+.+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 66 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence 334555666666666666666666663 33 455666666666666666666666666553
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.45 E-value=0.00026 Score=53.68 Aligned_cols=73 Identities=15% Similarity=0.091 Sum_probs=54.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC----C----CCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHH
Q 004856 577 YASMVNLLGRAGHMDEARELVKDM----P----FKPD-ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLS 647 (727)
Q Consensus 577 ~~~li~~~~~~g~~~~A~~~~~~~----~----~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 647 (727)
+-.+...+.+.|++++|..+|++. + ..++ ..+++.+..++.+.|++++|+..++++++++|+++.++..+.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~ 87 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 335566667777777777776655 1 1222 346777888899999999999999999999999998888775
Q ss_pred HH
Q 004856 648 NI 649 (727)
Q Consensus 648 ~~ 649 (727)
..
T Consensus 88 ~~ 89 (95)
T d1tjca_ 88 YF 89 (95)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.44 E-value=8.5e-05 Score=61.76 Aligned_cols=126 Identities=14% Similarity=0.139 Sum_probs=80.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhc----------CCHHHHHHHHHHhHHhcCCCCC-hhHHHHH
Q 004856 513 YAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNA----------GLVEEGRIIFKEMKESYGYEPS-QEHYASM 580 (727)
Q Consensus 513 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 580 (727)
|-+.+.+++|+..|++..+ +.| |...+..+..+|... +.+++|+..|+++.+. .|+ ...|..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l---~P~~~~a~~~l 81 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---DPKKDEAVWCI 81 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh---cchhhHHHhhH
Confidence 4566778888888888887 446 566777777777643 3446677777776643 343 4566666
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHH
Q 004856 581 VNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVA 660 (727)
Q Consensus 581 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 660 (727)
..+|...|++. ++... ..+++++|...|+++++++|++...+..|... ..|.
T Consensus 82 G~~y~~~g~~~------------~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~ 133 (145)
T d1zu2a1 82 GNAYTSFAFLT------------PDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAP 133 (145)
T ss_dssp HHHHHHHHHHC------------CCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHH
T ss_pred HHHHHHcccch------------hhHHH---------HHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHH
Confidence 66665544211 11111 11246889999999999999887776666654 3555
Q ss_pred HHHHHHHhCCC
Q 004856 661 KMRTFLRDRGL 671 (727)
Q Consensus 661 ~~~~~m~~~~~ 671 (727)
+++.+..+.|+
T Consensus 134 ~~~~e~~k~~~ 144 (145)
T d1zu2a1 134 QLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHSSS
T ss_pred HHHHHHHHHhc
Confidence 66665555553
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.44 E-value=6.5e-05 Score=77.39 Aligned_cols=261 Identities=9% Similarity=-0.042 Sum_probs=134.6
Q ss_pred HHHHHHhcCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 004856 387 CARKIFDSVKT--K-TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK 463 (727)
Q Consensus 387 ~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 463 (727)
+|.+.|++... + ...+|..+...|...|++++| |+++... .|+...-..+...+- ...+..+.+.++...+
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e~~Lw-~~~y~~~ie~~r~~~k 77 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVEQDLW-NHAFKNQITTLQGQAK 77 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHHHHHH-HHHTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHHHHHH-HHHHHHHHHHHHHhcc
Confidence 45566665432 2 344666677778888888776 6666543 232111000100000 0112334444554444
Q ss_pred hCCCchHhHHHH--HHHHHHhcCCHHHHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHH
Q 004856 464 LGLNSLSSVNTA--IFISYAKCGCIEMAGELFDEEKIDS-KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLIT 540 (727)
Q Consensus 464 ~~~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 540 (727)
....++..-... +...+...+.++.|...+...-... ++...|..+...+.+.|+.++|...+++.... .| ..+
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~-~~~ 154 (497)
T d1ya0a1 78 NRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--IC-QHC 154 (497)
T ss_dssp CSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHH--HH-HHH
T ss_pred cccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--CH-HHH
Confidence 333333222211 1222344566777777777644333 35667888888899999999999888776642 12 357
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHhhHHHHHHHHH
Q 004856 541 FLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGHMDEARELVKDM-PF-KPDARVWGPLLSACK 617 (727)
Q Consensus 541 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~ 617 (727)
+..+...+...|++++|...|++..+. .|+ ...|+.|...+...|+..+|...|.+. .. .|-..++..|...+.
T Consensus 155 ~~~LG~l~~~~~~~~~A~~~y~~A~~l---~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 155 LVHLGDIARYRNQTSQAESYYRHAAQL---VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH---CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 888899999999999999999999864 555 579999999999999999999999887 33 456667887776654
Q ss_pred HcCCHHHHHHHHHHHHccCCCC---cchHHHHHHHHHhcCChhHHHHHHHHH
Q 004856 618 MHSETELAELTAEKLISMEPEN---AGNYVLLSNIYAAAGKWNGVAKMRTFL 666 (727)
Q Consensus 618 ~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m 666 (727)
+..+..++ ....+.. ...+..+...+.....+++..++.+.+
T Consensus 232 ~~~~~~~~-------~~~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~ 276 (497)
T d1ya0a1 232 KALESRDE-------VKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKL 276 (497)
T ss_dssp HHTTSCCC-------CCSSCCHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHH
T ss_pred Hhhhhhhh-------hccccccchHHHHHHHHHHHHHhCCchhhHHHHHHHH
Confidence 43221100 0011111 123445555666777777766665544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.38 E-value=0.00035 Score=58.83 Aligned_cols=63 Identities=10% Similarity=-0.125 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-----------CcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 607 RVWGPLLSACKMHSETELAELTAEKLISMEPE-----------NAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 607 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
..|+.+..++...|++++|...+++++++.|. ...++..++.+|...|++++|.+.+++..+.
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666666778888888888888887765331 1235778899999999999999999987654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.28 E-value=0.003 Score=54.09 Aligned_cols=72 Identities=14% Similarity=0.159 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHH----hcCCCCChhH
Q 004856 503 IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKE----SYGYEPSQEH 576 (727)
Q Consensus 503 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 576 (727)
...+..+...+...|++++|+..++++.+ +.| +...|..++.++...|+.++|++.|+.+.. ..|+.|+..+
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~--~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 35677788888899999999999999988 456 677899999999999999999988888743 2488888665
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.27 E-value=7.7e-05 Score=62.06 Aligned_cols=98 Identities=11% Similarity=0.055 Sum_probs=65.6
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 004856 548 CVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAEL 627 (727)
Q Consensus 548 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~ 627 (727)
|.+.+.+++|+..|+...+. -+.+...+..+..+|...+++..+.+ ..+.+++|+.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~--~P~~~~~~~~~g~~l~~~~~~~~~~e----------------------~~~~~~~Ai~ 62 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISD----------------------AKQMIQEAIT 62 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHH----------------------HHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHhhhhhhhhH----------------------HHHHHHHHHH
Confidence 34455566666666666643 12234455555555554444333322 2345688999
Q ss_pred HHHHHHccCCCCcchHHHHHHHHHhcCC-----------hhHHHHHHHHHHhC
Q 004856 628 TAEKLISMEPENAGNYVLLSNIYAAAGK-----------WNGVAKMRTFLRDR 669 (727)
Q Consensus 628 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~a~~~~~~m~~~ 669 (727)
.++++++++|+++.+|..++.+|...|+ +++|.+.|++..+.
T Consensus 63 ~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 63 KFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc
Confidence 9999999999999999999999988764 57777777776655
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.23 E-value=0.00054 Score=63.09 Aligned_cols=125 Identities=10% Similarity=0.009 Sum_probs=85.9
Q ss_pred HHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHH
Q 004856 514 AKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGHMD 591 (727)
Q Consensus 514 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~ 591 (727)
.+.|++++|++.+++.++. .| |...+..+...++..|++++|...++...+. .|+ ...+..+...+...+..+
T Consensus 7 L~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccH
Confidence 3568899999999998884 45 6788888999999999999999999988854 565 345555555555444444
Q ss_pred HHHHHHHhC--CCCCCH-hhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchH
Q 004856 592 EARELVKDM--PFKPDA-RVWGPLLSACKMHSETELAELTAEKLISMEPENAGNY 643 (727)
Q Consensus 592 ~A~~~~~~~--~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 643 (727)
++..-.... ...|+. ..+......+...|+.++|...++++.+..|..+..+
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 443322221 122322 2233334447889999999999999999998766554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.14 E-value=0.0018 Score=54.24 Aligned_cols=64 Identities=17% Similarity=0.050 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCC-----HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 004856 576 HYASMVNLLGRAGHMDEARELVKDM--------PFKPD-----ARVWGPLLSACKMHSETELAELTAEKLISMEPEN 639 (727)
Q Consensus 576 ~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~-----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 639 (727)
.|+.+..+|.+.|++++|.+.+++. ...++ ...+..+..++...|++++|+..|++++++.|..
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 4555555556666665555555443 11221 1245566777899999999999999999876543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.98 E-value=0.0016 Score=49.10 Aligned_cols=61 Identities=15% Similarity=-0.008 Sum_probs=51.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-------cchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 609 WGPLLSACKMHSETELAELTAEKLISMEPEN-------AGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 609 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
+-.+...+.+.|+++.|+..+++++++.|.+ ..++..|+.+|.+.|++++|+..++++.+.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 3456667899999999999999999875543 357889999999999999999999998776
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.55 E-value=0.098 Score=39.70 Aligned_cols=141 Identities=9% Similarity=0.055 Sum_probs=103.5
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH
Q 004856 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE 592 (727)
Q Consensus 513 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 592 (727)
+.-.|..++..+++.+.... .+..-|+.++--....-+-+...++++.+-+-|.+. .++++..
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls--------------~C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCch--------------hhhcHHH
Confidence 44568888888888888763 356667777776666777777777777665543332 3455555
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 004856 593 ARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLK 672 (727)
Q Consensus 593 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 672 (727)
....+-.+. .+..-.+.-+....++|.-+.-..+++.+++.+..++.....++.+|.+.|...++.+++++..++|++
T Consensus 75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 555555553 233445566777889999999999999988876668999999999999999999999999999999985
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.44 E-value=0.0022 Score=58.79 Aligned_cols=116 Identities=19% Similarity=0.079 Sum_probs=52.9
Q ss_pred hcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHH
Q 004856 482 KCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD-LITFLGLLTACVNAGLVEEGRI 559 (727)
Q Consensus 482 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~ 559 (727)
+.|++++|...+++.....| |...+..+...|+..|++++|.+.|++..+ +.|+ ...+..+...+...+..+++..
T Consensus 8 ~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~--l~P~~~~~~~~l~~ll~a~~~~~~a~~ 85 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRHLVKAAQARKDFAQ 85 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHhccccHHHHH
Confidence 34555555555555322233 455566666666666666666666666655 3443 3333333333333333333322
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 004856 560 IFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM 600 (727)
Q Consensus 560 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 600 (727)
-....... +-+++...+......+.+.|+.++|.+.++++
T Consensus 86 ~~~~~~~~-~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a 125 (264)
T d1zbpa1 86 GAATAKVL-GENEELTKSLVSFNLSMVSQDYEQVSELALQI 125 (264)
T ss_dssp SCCCEECC-CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred Hhhhhhcc-cCchHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 22111100 11111222333344455566666666666554
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.34 E-value=1.4 Score=42.99 Aligned_cols=55 Identities=18% Similarity=0.058 Sum_probs=33.8
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 004856 375 LIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG 430 (727)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 430 (727)
.+..+.+.++++.....+..-+ .++..-.....+....|+.++|...+..+-..|
T Consensus 78 ~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~ 132 (450)
T d1qsaa1 78 FVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (450)
T ss_dssp HHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred HHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 3455666777777666554322 233334455666777888888887777766554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.18 E-value=0.26 Score=38.94 Aligned_cols=50 Identities=12% Similarity=-0.012 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHHccCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 004856 620 SETELAELTAEKLISMEPENAGNYVLLSNIYAA----AGKWNGVAKMRTFLRDRGL 671 (727)
Q Consensus 620 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 671 (727)
.|.++|...++++.+.. ++.+...|+.+|.. ..+.++|.+++++..+.|.
T Consensus 73 ~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 73 KDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 45677777777776654 35566667777665 3467777777777766654
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.78 E-value=0.98 Score=34.16 Aligned_cols=140 Identities=8% Similarity=-0.026 Sum_probs=86.4
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHH
Q 004856 411 VTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAG 490 (727)
Q Consensus 411 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 490 (727)
.-.|..++..+++.+.... .+..-|+.++.-....-+-+...+.++.+-+. .| ..+|+++....
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FD----------ls~C~Nlk~vv 76 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVV 76 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHH
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cC----------chhhhcHHHHH
Confidence 3456677777777766543 23334444444333333333333333322221 11 23455555555
Q ss_pred HHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC
Q 004856 491 ELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGY 570 (727)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 570 (727)
..+-.+. .+....+.-++.+.+.|+-++-.++++.+.+.+ +|++.....+..||.+.|...++.+++.++.++ |+
T Consensus 77 ~C~~~~n---~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~-G~ 151 (161)
T d1wy6a1 77 ECGVINN---TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKK-GE 151 (161)
T ss_dssp HHHHHTT---CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHhc---chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH-hH
Confidence 5554443 344455666778888899888888888877754 788888888899999999999999999888877 65
Q ss_pred C
Q 004856 571 E 571 (727)
Q Consensus 571 ~ 571 (727)
+
T Consensus 152 K 152 (161)
T d1wy6a1 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.02 E-value=0.33 Score=37.24 Aligned_cols=71 Identities=13% Similarity=0.045 Sum_probs=33.1
Q ss_pred CChhHHHHHHHHHHhcC---CHHHHHHHHHhC-CCCCC-H-hhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcch
Q 004856 572 PSQEHYASMVNLLGRAG---HMDEARELVKDM-PFKPD-A-RVWGPLLSACKMHSETELAELTAEKLISMEPENAGN 642 (727)
Q Consensus 572 p~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~p~-~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 642 (727)
|+..+--....++.+.. +.++++.++++. ...|. . ..+..|.-+|.+.|++++|...++++++++|++..+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence 33334344444444433 234555555544 11232 1 233344444555666666666666666666654433
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=92.24 E-value=5.4 Score=38.57 Aligned_cols=352 Identities=9% Similarity=-0.004 Sum_probs=200.7
Q ss_pred HHHHHhhcCCChHHHHHHHhcCCCCCeehHHHHHHHHHhcCCchHHHHHHHHHHHcC-CCCChhhHHHHHHHhhcCCChH
Q 004856 273 ALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG-FRADLFTAIAAVSSISTMKNIE 351 (727)
Q Consensus 273 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~ 351 (727)
..+..+.+.++++.....+..-+ .+...-.....+..+.|+..+|...+...-..| ..|+
T Consensus 77 ~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~------------------ 137 (450)
T d1qsaa1 77 RFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPN------------------ 137 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCT------------------
T ss_pred HHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch------------------
Confidence 33556677788877666554322 244444566777888899999988887775544 2222
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 004856 352 WGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV 431 (727)
Q Consensus 352 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 431 (727)
....++....+.|. .+...+-.-+......|+...|..+...+..........++......... ...... .
T Consensus 138 ~c~~l~~~~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~---~~~~~~---~-- 208 (450)
T d1qsaa1 138 ACDKLFSVWRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFART---T-- 208 (450)
T ss_dssp HHHHHHHHHHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHH---S--
T ss_pred HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhH---HHHHhc---C--
Confidence 23344444444443 23333344555666778999999998887765555555555554332222 222111 1
Q ss_pred CCCHHHHHHHHHHHhc--CCChHHHHHHHHHHHHhCCCchHhHH---HHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHH
Q 004856 432 EVDFVTIINILPACVN--IGALEHVKYLHGYSMKLGLNSLSSVN---TAIFISYAKCGCIEMAGELFDEEKIDSKDIITW 506 (727)
Q Consensus 432 ~p~~~t~~~ll~a~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 506 (727)
.++......+..+..+ ..+.+.+..++............... ..+...+...+..+.+...+........+....
T Consensus 209 ~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 288 (450)
T d1qsaa1 209 GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLI 288 (450)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHH
T ss_pred CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHH
Confidence 2233333333333332 24667777777666554322222211 222233344566777777776644334454444
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 004856 507 NSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR 586 (727)
Q Consensus 507 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 586 (727)
.-.+......+++..+...++.|.... .-...-...+..++...|+.++|..+|..+.. .++ .|..|... +
T Consensus 289 ~w~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~----~~~--fYG~LAa~--~ 359 (450)
T d1qsaa1 289 ERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QRG--FYPMVAAQ--R 359 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCS--HHHHHHHH--H
T ss_pred HHHHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc----CCC--hHHHHHHH--H
Confidence 445555567789999999998875421 12344456788999999999999999998863 233 44443321 2
Q ss_pred cCCHHHHHHHH-HhCCCCCCHh-hH---HHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHH
Q 004856 587 AGHMDEARELV-KDMPFKPDAR-VW---GPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAK 661 (727)
Q Consensus 587 ~g~~~~A~~~~-~~~~~~p~~~-~~---~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 661 (727)
.|..-. +- ...+..++.. .- ..-+..+...|....|...+..+.... ++.-...++....+.|.++.|+.
T Consensus 360 Lg~~~~---~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~ 434 (450)
T d1qsaa1 360 IGEEYE---LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQ 434 (450)
T ss_dssp TTCCCC---CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCCCC---CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHH
Confidence 221000 00 0001111110 00 112334778999999999988887543 45667788889999999999998
Q ss_pred HHHHH
Q 004856 662 MRTFL 666 (727)
Q Consensus 662 ~~~~m 666 (727)
...+.
T Consensus 435 a~~~~ 439 (450)
T d1qsaa1 435 ATIAG 439 (450)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 77654
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=91.39 E-value=2 Score=33.29 Aligned_cols=47 Identities=13% Similarity=-0.006 Sum_probs=25.4
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHhHHh
Q 004856 518 DWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN----AGLVEEGRIIFKEMKES 567 (727)
Q Consensus 518 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~ 567 (727)
+.++|+++|++..+.| ++.....|...|.. ..+.++|.++|+...+.
T Consensus 74 d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 74 DLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 124 (133)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence 4566666666666554 23333444444443 23566666666666554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.67 E-value=1.1 Score=34.19 Aligned_cols=70 Identities=10% Similarity=0.103 Sum_probs=42.7
Q ss_pred CChHHHHHHHHHHHhc---CCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHh
Q 004856 536 PDLITFLGLLTACVNA---GLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGHMDEARELVKDM-PFKPDAR 607 (727)
Q Consensus 536 p~~~t~~~ll~~~~~~---g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~ 607 (727)
|...|--....++.+. .+.++|+.+++.+.+. .+.+ ...+-.|.-+|.+.|++++|.+.++.+ .+.|+..
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~--~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~ 107 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 107 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcH
Confidence 3444545555556554 3455777777777653 2223 245556677777788888888877776 5566543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.05 E-value=3.9 Score=29.18 Aligned_cols=63 Identities=21% Similarity=0.240 Sum_probs=49.6
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 004856 518 DWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582 (727)
Q Consensus 518 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 582 (727)
+.-+..+-++.+....+.|++....+.++||.+.+++.-|.++++..+.+.| ++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence 4456666777777888899999999999999999999999999999887633 34556666553
|