Citrus Sinensis ID: 004968
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 721 | 2.2.26 [Sep-21-2011] | |||||||
| Q38854 | 717 | 1-deoxy-D-xylulose-5-phos | no | no | 0.923 | 0.928 | 0.594 | 0.0 | |
| O78328 | 719 | Probable 1-deoxy-D-xylulo | N/A | no | 0.898 | 0.901 | 0.610 | 0.0 | |
| O22567 | 720 | 1-deoxy-D-xylulose-5-phos | no | no | 0.895 | 0.897 | 0.604 | 0.0 | |
| Q6YU51 | 713 | Probable 1-deoxy-D-xylulo | no | no | 0.895 | 0.906 | 0.577 | 0.0 | |
| B6IRB5 | 642 | 1-deoxy-D-xylulose-5-phos | yes | no | 0.857 | 0.962 | 0.497 | 1e-175 | |
| Q985Y3 | 637 | 1-deoxy-D-xylulose-5-phos | yes | no | 0.864 | 0.978 | 0.503 | 1e-174 | |
| B0CKC0 | 643 | 1-deoxy-D-xylulose-5-phos | yes | no | 0.857 | 0.961 | 0.498 | 1e-173 | |
| Q11KE0 | 650 | 1-deoxy-D-xylulose-5-phos | yes | no | 0.861 | 0.955 | 0.482 | 1e-173 | |
| Q89RW1 | 661 | 1-deoxy-D-xylulose-5-phos | yes | no | 0.859 | 0.937 | 0.481 | 1e-172 | |
| A6WWC4 | 638 | 1-deoxy-D-xylulose-5-phos | yes | no | 0.857 | 0.968 | 0.498 | 1e-172 |
| >sp|Q38854|DXS_ARATH 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=DXS PE=1 SV=2 | Back alignment and function desciption |
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Score = 818 bits (2114), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/683 (59%), Positives = 513/683 (75%), Gaps = 17/683 (2%)
Query: 45 LCPSSSSITSSKLVTVSRICA-LPDIDDFFWDKEPTPILDLVENPLRLKSLTIKELKQLA 103
L P+++S ++ + +++CA L + +++ ++ PTP+LD + P+ +K+L++KELKQL+
Sbjct: 43 LKPNNNSHSNRR----AKVCASLAEKGEYYSNRPPTPLLDTINYPIHMKNLSVKELKQLS 98
Query: 104 VEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRR 163
E+RS++ VSKT L SSL VELTVALH++F+ P DKILWDVG Q+Y HKILTGRR
Sbjct: 99 DELRSDVIFNVSKTGGHLGSSLGVVELTVALHYIFNTPQDKILWDVGHQSYPHKILTGRR 158
Query: 164 SLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISN 223
+ T+R+ +G+SG+T R ESE+D F GH ++SAGLGMAV RD+KGK +V VI +
Sbjct: 159 GKMPTMRQTNGLSGFTKRGESEHDCFGTGHSSTTISAGLGMAVGRDLKGKNNNVVAVIGD 218
Query: 224 GTTMAGQAYEAMSNAGYLDSNMIVILNDSRH-SLHPKIEESPKTSINALSSTLSRIQSSK 282
G AGQAYEAM+NAGYLDS+MIVILND++ SL + P + ALSS LSR+QS+
Sbjct: 219 GAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPSPPVGALSSALSRLQSNP 278
Query: 283 SFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIE 342
+ R+LREVAKGMTK+IG MH+ AAKVDEYARGMI GS+LFEELGLYYIGPVDGHNI+
Sbjct: 279 ALRELREVAKGMTKQIGGPMHQLAAKVDEYARGMISGTGSSLFEELGLYYIGPVDGHNID 338
Query: 343 DLISVLQEVASLGSMGPVLVHVVTEENR------RAEDTQKSEAIEKQQEGASDSNSLPF 396
DL+++L+EV S + GPVL+HVVTE+ R RA+D K + K +
Sbjct: 339 DLVAILKEVKSTRTTGPVLIHVVTEKGRGYPYAERADD--KYHGVVKFDP--ATGRQFKT 394
Query: 397 GNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAV 456
N +++Y F EALV EAE DKD+V +HA M L LFQ +FP R FDVG+AEQHAV
Sbjct: 395 TNKTQSYTTYFAEALVAEAEVDKDVVAIHAAMGGGTGLNLFQRRFPTRCFDVGIAEQHAV 454
Query: 457 TFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGA 516
TF+AGLAC GLKPFC I S+F+QRAYDQVV+DVD Q+LPVRF + AGLVG+DGPT CGA
Sbjct: 455 TFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGA 514
Query: 517 FDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPRGAIVRTDL-PGYRGIP 575
FD+TFM+CLPNMIVMAPSDE +L +MVAT +IDDRP CFRYPRG + L PG +G+P
Sbjct: 515 FDVTFMACLPNMIVMAPSDEADLFNMVATAVAIDDRPSCFRYPRGNGIGVALPPGNKGVP 574
Query: 576 IEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVREL 635
IEIGKG++L EG+ VALLGYG+ VQ+CL A +L + G++VTVADARFCKPLD L+R L
Sbjct: 575 IEIGKGRILKEGERVALLGYGSAVQSCLGAAVMLEERGLNVTVADARFCKPLDRALIRSL 634
Query: 636 CQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALA 695
++H LITVEEGSIGGFGSHV F+ALDGLLD +KWRP+VLPD YI+H +P QLA A
Sbjct: 635 AKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGKLKWRPMVLPDRYIDHGAPADQLAEA 694
Query: 696 GLTGHHIAATALSLLGRTREALL 718
GL HIAATAL+L+G REAL
Sbjct: 695 GLMPSHIAATALNLIGAPREALF 717
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Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP). Is a limiting enzyme for plastidic isoprenoid biosynthesis and essential for chloroplast development. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 2EC: .EC: 1EC: .EC: 7 |
| >sp|O78328|DXS_CAPAN Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Capsicum annuum GN=TKT2 PE=2 SV=1 | Back alignment and function description |
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Score = 811 bits (2096), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/670 (61%), Positives = 504/670 (75%), Gaps = 22/670 (3%)
Query: 64 CALPDIDDFFWDKEPTPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKS 123
+L + +++ + PTPI+D + P+ +K+L++KELKQLA E+RS+ VSKT L S
Sbjct: 58 ASLSESGEYYTQRPPTPIVDTINYPIHMKNLSLKELKQLADELRSDTIFNVSKTGGHLGS 117
Query: 124 SLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSE 183
SL VELTVALH+VF+AP D+ILWDVG Q+Y HKILTGRR + TLR+ +G++G+T RSE
Sbjct: 118 SLGVVELTVALHYVFNAPQDRILWDVGHQSYPHKILTGRREKMSTLRQTNGLAGFTKRSE 177
Query: 184 SEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDS 243
SEYD F GH ++SAGLGMAV RD+KG+ ++ VI +G AGQAYEAM+NAGYLDS
Sbjct: 178 SEYDCFGTGHSSTTISAGLGMAVGRDLKGRNNNVIAVIGDGAMTAGQAYEAMNNAGYLDS 237
Query: 244 NMIVILNDSRH-SLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGM 302
+MIVILND+R SL + P + ALSS LSR+QS++ R+LREVAKG+TK+IG M
Sbjct: 238 DMIVILNDNRQVSLPTATLDGPVPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPM 297
Query: 303 HEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLV 362
HE AAKVDEYARGMI GSTLFEELGLYYIGPVDGHNI+DLIS+L+EV S + GPVL+
Sbjct: 298 HELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLISILKEVRSTKTTGPVLI 357
Query: 363 HVVTEENR------RAED-----TQKSEAIEKQQEGASDSNSLPFGNYSRTYDDCFIEAL 411
HVVTE+ R RA D + A KQ +G++ + S Y F EAL
Sbjct: 358 HVVTEKGRGYPYAERAADKYHGVAKFDPATGKQFKGSAKTQS---------YTTYFAEAL 408
Query: 412 VMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFC 471
+ EAE DKDIV +HA M + LF +FP R FDVG+AEQHAVTF+AGLAC GLKPFC
Sbjct: 409 IAEAEADKDIVAIHAAMGGGTGMNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFC 468
Query: 472 IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVM 531
I S+F+QRAYDQVV+DVD Q+LPVRF + AGLVG+DGPT CGAFD+TFM+CLPNM+VM
Sbjct: 469 AIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMACLPNMVVM 528
Query: 532 APSDEDELVDMVATVASIDDRPVCFRYPRGAIVRTDLP-GYRGIPIEIGKGKVLVEGKDV 590
APSDE EL +VAT A+IDDRP CFRYPRG + +LP G +GIP+E+GKG++LVEG+ V
Sbjct: 529 APSDEAELFHIVATAAAIDDRPSCFRYPRGNGIGVELPAGNKGIPLEVGKGRILVEGERV 588
Query: 591 ALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSI 650
ALLGYG+ VQNCL A ++L G+ VTVADARFCKPLD L+R L ++H L+TVE+GSI
Sbjct: 589 ALLGYGSAVQNCLAAASVLESRGLQVTVADARFCKPLDRALIRSLAKSHEVLVTVEKGSI 648
Query: 651 GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLL 710
GGFGSHV F+ALDGLLD +KWRPIVLPD YI+H SP QLA AGLT HIAAT ++L
Sbjct: 649 GGFGSHVVQFMALDGLLDGKLKWRPIVLPDRYIDHGSPADQLAEAGLTPSHIAATVFNIL 708
Query: 711 GRTREALLLM 720
G+TREAL +M
Sbjct: 709 GQTREALEVM 718
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Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP). Capsicum annuum (taxid: 4072) EC: 2 EC: . EC: 2 EC: . EC: 1 EC: . EC: 7 |
| >sp|O22567|DXS1_ORYSJ 1-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CLA1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 807 bits (2085), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/658 (60%), Positives = 490/658 (74%), Gaps = 12/658 (1%)
Query: 71 DFFWDKEPTPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVEL 130
++ + PTP+LD V P+ +K+L++KEL+QLA E+RS++ VSKT L SSL VEL
Sbjct: 62 EYHSQRPPTPLLDTVNYPIHMKNLSLKELQQLADELRSDVIFHVSKTGGHLGSSLGVVEL 121
Query: 131 TVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFN 190
TVALH+VF+ P DKILWDVG Q+Y HKILTGRR + T+R+ +G+SG+T RSESEYD F
Sbjct: 122 TVALHYVFNTPQDKILWDVGHQSYPHKILTGRRDKMPTMRQTNGLSGFTKRSESEYDSFG 181
Query: 191 AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILN 250
GH ++SA LGMAV RD+KG + +V VI +G AGQAYEAM+NAGYLDS+MIVILN
Sbjct: 182 TGHSSTTISAALGMAVGRDLKGGKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILN 241
Query: 251 DSRH-SLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKV 309
D++ SL + P + ALSS LS++QSS+ R+LREVAKG+TK+IG +HE AAKV
Sbjct: 242 DNKQVSLPTATLDGPAPPVGALSSALSKLQSSRPLRELREVAKGVTKQIGGSVHELAAKV 301
Query: 310 DEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEEN 369
DEYARGMI GSTLFEELGLYYIGPVDGHNI+DLI++L+EV S + GPVL+HVVTE+
Sbjct: 302 DEYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLITILREVKSTKTTGPVLIHVVTEKG 361
Query: 370 R------RAEDTQKSEAIEKQQEGASDSNSLPFGNYSRTYDDCFIEALVMEAEKDKDIVV 423
R RA D K + K P S Y + F EAL+ EAE+D +V
Sbjct: 362 RGYPYAERAAD--KYHGVAKFDPATGKQFKSPAKTLS--YTNYFAEALIAEAEQDNRVVA 417
Query: 424 VHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYD 483
+HA M L F +FP R FDVG+AEQHAVTF+AGLAC GLKPFC I S+FLQR YD
Sbjct: 418 IHAAMGGGTGLNYFLRRFPNRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFLQRGYD 477
Query: 484 QVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMV 543
QVV+DVD Q+LPVRF + AGLVG+DGPT CGAFD+T+M+CLPNM+VMAPSDE EL MV
Sbjct: 478 QVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELCHMV 537
Query: 544 ATVASIDDRPVCFRYPRGAIVRTDL-PGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNC 602
AT A+IDDRP CFRYPRG + L P Y+G+P+E+GKG+VL+EG+ VALLGYG+ VQ C
Sbjct: 538 ATAAAIDDRPSCFRYPRGNGIGVPLPPNYKGVPLEVGKGRVLLEGERVALLGYGSAVQYC 597
Query: 603 LKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIA 662
L A +L+ + G+ VTVADARFCKPLD L+R L +H L+TVEEGSIGGFGSHV+ F+A
Sbjct: 598 LAAASLVERHGLKVTVADARFCKPLDQTLIRRLASSHEVLLTVEEGSIGGFGSHVAQFMA 657
Query: 663 LDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTREALLLM 720
LDGLLD +KWRP+VLPD YI+H SP QLA AGLT HIAAT ++LG+ REAL +M
Sbjct: 658 LDGLLDGKLKWRPLVLPDRYIDHGSPADQLAEAGLTPSHIAATVFNVLGQAREALAIM 715
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Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP). Is a limiting enzyme for plastidic isoprenoid biosynthesis and essential for chloroplast development. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 2 EC: . EC: 1 EC: . EC: 7 |
| >sp|Q6YU51|DXS2_ORYSJ Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0190000 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/656 (57%), Positives = 472/656 (71%), Gaps = 10/656 (1%)
Query: 71 DFFWDKEPTPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVEL 130
D+ +K TP+LD V P+ +K+L+ EL+QLA E+R+E+ VSKT L SSL VEL
Sbjct: 60 DYSGEKPATPLLDTVNYPVHMKNLSTPELEQLAAELRAEIVHTVSKTGGHLSSSLGVVEL 119
Query: 131 TVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFN 190
VALHHVF P DKI+WDVG Q Y HKILTGRRS +HT+R+ G++G+ R ES +D F
Sbjct: 120 AVALHHVFDTPEDKIIWDVGHQAYPHKILTGRRSRMHTIRQTSGLAGFPKRDESAHDAFG 179
Query: 191 AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILN 250
AGH S+SA LGMAVARD+ GK+ +++VI +G AGQAYEAM+N+GYLDSNMIV+LN
Sbjct: 180 AGHSSTSISAALGMAVARDLLGKKNHVISVIGDGAMTAGQAYEAMNNSGYLDSNMIVVLN 239
Query: 251 DSRH-SLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKV 309
D++ SL + P T + ALS L+++QSS R+LRE AK +TK+IG HE AAKV
Sbjct: 240 DNKQVSLPTATLDGPATPVGALSKALTKLQSSTKLRRLREAAKTVTKQIGGQAHEVAAKV 299
Query: 310 DEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEEN 369
DEYARGM+ GSTLFEELGLYYIGPVDGH+++DL+++ +V S+ + GPVLVH+VTE+
Sbjct: 300 DEYARGMVSASGSTLFEELGLYYIGPVDGHSVDDLVAIFNKVKSMPAPGPVLVHIVTEKG 359
Query: 370 RRAEDTQKSEAIEKQQEGA---SDSNSLPFGNYSRT--YDDCFIEALVMEAEKDKDIVVV 424
+ +EA + G + F + T Y F EAL+ EAE D +V +
Sbjct: 360 K---GYPPAEAAADRMHGVVKFDPTTGRQFKSKCSTLSYTQYFAEALIREAEADDKVVGI 416
Query: 425 HAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQ 484
HA M L F ++FPER FDVG+AEQHAVTF+AGLA GLKPFC I S+FLQR YDQ
Sbjct: 417 HAAMGGGTGLNYFHKRFPERCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRGYDQ 476
Query: 485 VVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVA 544
VV+DVD QRLPVRF + AGLVG+DGPT CGAFD+ +M+CLPNM+VMAP+DE EL+ MVA
Sbjct: 477 VVHDVDLQRLPVRFAMDRAGLVGADGPTHCGAFDVAYMACLPNMVVMAPADEAELMHMVA 536
Query: 545 TVASIDDRPVCFRYPRGAIVRTDL-PGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCL 603
T A+IDDRP CFR+PRG + L P ++G P+E+GKG+VLV G VALLGYG MVQ C+
Sbjct: 537 TAAAIDDRPSCFRFPRGNGIGAVLPPNHKGTPLEVGKGRVLVGGNRVALLGYGTMVQACM 596
Query: 604 KARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIAL 663
KA L + GI VTVADARFCKPLD L+REL H L+TVEEGSIGGFGSHV+H+++L
Sbjct: 597 KAAEALKEHGIYVTVADARFCKPLDTGLIRELAAEHEVLVTVEEGSIGGFGSHVAHYLSL 656
Query: 664 DGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTREALLL 719
GLLD +K R + LPD YI+H +P QL AGLT HIAAT LSLLGR EAL L
Sbjct: 657 SGLLDGPLKLRSMFLPDRYIDHGAPVDQLEEAGLTPRHIAATVLSLLGRPLEALQL 712
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Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP). Is a limiting enzyme for plastidic isoprenoid biosynthesis and essential for chloroplast development. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 2 EC: . EC: 1 EC: . EC: 7 |
| >sp|B6IRB5|DXS_RHOCS 1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=dxs PE=3 SV=1 | Back alignment and function description |
|---|
Score = 615 bits (1587), Expect = e-175, Method: Compositional matrix adjust.
Identities = 318/639 (49%), Positives = 420/639 (65%), Gaps = 21/639 (3%)
Query: 79 TPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVF 138
TP+LD V P L+ L +L+Q A E+R+E + VS T L + L VELTVALH+VF
Sbjct: 7 TPLLDTVNTPEDLRKLDPSQLRQFADELRTETINAVSVTGGHLGAGLGVVELTVALHYVF 66
Query: 139 HAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSV 198
+ P D+++WDVG Q Y HKILTGRR I TLR G+SG+T R+ESEYDPF AGH S+
Sbjct: 67 NTPADRLIWDVGHQCYPHKILTGRRDRIRTLRMGGGLSGFTKRAESEYDPFGAGHSSTSI 126
Query: 199 SAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHP 258
SA LGMAV RD G + ++ VI +G+ AG AYEAM+NAG ++S MIVILND+ S+ P
Sbjct: 127 SAALGMAVGRDQLGHKNHVICVIGDGSISAGMAYEAMNNAGAMNSRMIVILNDNDMSIAP 186
Query: 259 KIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIG 318
+ A+S LSR+ SS+ +R LRE+ K + +R+ R + E A + +EYARG +
Sbjct: 187 --------PVGAMSGYLSRLISSRQYRGLRELGKQVAERLPRPLQEAARRAEEYARGFV- 237
Query: 319 PQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKS 378
G TLFEE+G YY+GP+DGHN++ L+ VL+ + GPVL+H VT++ R ++S
Sbjct: 238 -TGGTLFEEMGFYYVGPIDGHNLDHLLPVLENIRDDQGTGPVLIHAVTQKGRGYGPAERS 296
Query: 379 ----EAIEKQQ--EGASDSNSLPFGNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDL 432
A+ K GA +Y+R F ++L+ EAE D +V + A M
Sbjct: 297 ADKLHAVSKFDVITGAQAKAKANAPSYTR----VFADSLIQEAEADSRVVAITAAMPSGT 352
Query: 433 SLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQ 492
L LF+++FP+R +DVG+AEQHAVTF+AGLA GLKPFC I S FLQRAYDQVV+DV Q
Sbjct: 353 GLDLFEKRFPDRTYDVGIAEQHAVTFAAGLAAEGLKPFCAIYSTFLQRAYDQVVHDVCIQ 412
Query: 493 RLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDR 552
LPVRF I AGLVGSDG T G+FD+ ++ C+PN+++MA +DE EL MVAT A+ D
Sbjct: 413 NLPVRFAIDRAGLVGSDGCTHAGSFDVAYLGCVPNIVIMAAADEAELKHMVATAAAYDHG 472
Query: 553 PVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKL 612
P+ RYPRG V ++P RG +EIGKG+++ EG VA+L G ++ L A L+
Sbjct: 473 PIAVRYPRGEGVGLEMP-ERGQVLEIGKGRIVKEGTKVAILSLGTRLKEALLAAEDLNAR 531
Query: 613 GIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVK 672
G+ TVADARF KP+D L+R L Q+H LITVEEGSIGGFGS+V HF+A GLLD G+K
Sbjct: 532 GLSTTVADARFAKPIDEALIRRLAQDHEVLITVEEGSIGGFGSYVLHFLAQSGLLDQGLK 591
Query: 673 WRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 711
RP+VLPD + + +P +Q AGL HI TAL LG
Sbjct: 592 VRPMVLPDIFQDQDAPAKQYDEAGLNARHIVETALKALG 630
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Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP). Rhodospirillum centenum (strain ATCC 51521 / SW) (taxid: 414684) EC: 2 EC: . EC: 2 EC: . EC: 1 EC: . EC: 7 |
| >sp|Q985Y3|DXS_RHILO 1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium loti (strain MAFF303099) GN=dxs PE=3 SV=1 | Back alignment and function description |
|---|
Score = 612 bits (1578), Expect = e-174, Method: Compositional matrix adjust.
Identities = 324/643 (50%), Positives = 414/643 (64%), Gaps = 20/643 (3%)
Query: 79 TPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVF 138
TP+LD V P L++L EL QLA E+R EL VS+T L + L VELTVALH+VF
Sbjct: 7 TPLLDKVRIPADLRALDESELPQLASELRLELVDAVSRTGGHLGAGLGVVELTVALHYVF 66
Query: 139 HAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSV 198
+ P D+++WDVG Q Y HKILTGRR I TLR++ G+SG+T R+ESEYDPF A H S+
Sbjct: 67 NTPDDRLIWDVGHQAYPHKILTGRRDRIRTLRQEGGLSGFTRRAESEYDPFGAAHSSTSI 126
Query: 199 SAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHP 258
SAGLGMA ARD+ G R ++ VI +G AG AYEAM+NAG LD+ +IVILND+ S+ P
Sbjct: 127 SAGLGMAAARDLSGGRNNVIAVIGDGAMSAGMAYEAMNNAGALDARLIVILNDNDMSIAP 186
Query: 259 KIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIG 318
A+S+ L+R+ S K++ LR+ K +T +G+ + E+ARG +
Sbjct: 187 --------PTGAMSAYLARLASGKAYAGLRDFGKKLTSYLGKRADRAITRAVEHARGYV- 237
Query: 319 PQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKS 378
G TLFEELG Y+IGP+DGHN+E LI VL+ V G GPVL+HVVT++ + +
Sbjct: 238 -TGGTLFEELGFYHIGPIDGHNLEHLIPVLKNVRDNGE-GPVLIHVVTQKGK---GYAPA 292
Query: 379 EAIEKQQEGASDSNSLPFGNY-----SRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLS 433
EA + G + + + + Y F E+L+ EA +D IV V A M
Sbjct: 293 EAAADKYHGVNKFDVITGAQAKAPANAPAYTKVFAESLIREAREDDRIVAVTAAMPSGTG 352
Query: 434 LQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQR 493
L LF E FP R FDVG+AEQHAVTF+AGLA G KPF I S FLQRAYDQVV+DV Q+
Sbjct: 353 LDLFGEVFPSRTFDVGIAEQHAVTFAAGLATEGYKPFAAIYSTFLQRAYDQVVHDVAIQK 412
Query: 494 LPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRP 553
LPVRF I AG VG+DG T CGAFD TF++ LP +VMA +DE EL MV T A+ DD P
Sbjct: 413 LPVRFPIDRAGFVGADGATHCGAFDTTFLASLPGFVVMAAADEAELRHMVRTAAAYDDGP 472
Query: 554 VCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLG 613
+ FRYPRG V D+P RG +E+GKG+V+ EG VALL +G +Q+CL A L G
Sbjct: 473 IAFRYPRGNGVGVDMP-ERGEVLELGKGRVVREGSKVALLSFGTRLQDCLIAAEELGAAG 531
Query: 614 IDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKW 673
+ TVADARF KPLD L+R L ++H L+TVEEG+IGGF SHV F+A +GLL+SG+K
Sbjct: 532 LSTTVADARFAKPLDEDLIRRLARSHEVLVTVEEGAIGGFASHVLQFLAHEGLLESGLKV 591
Query: 674 RPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTREA 716
RP+VLPD + +HA P + A AGL I T + L T A
Sbjct: 592 RPLVLPDVFTDHAKPEKMYADAGLDAAGIVRTVFTALDHTARA 634
|
Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP). Rhizobium loti (strain MAFF303099) (taxid: 266835) EC: 2 EC: . EC: 2 EC: . EC: 1 EC: . EC: 7 |
| >sp|B0CKC0|DXS_BRUSI 1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=dxs PE=3 SV=1 | Back alignment and function description |
|---|
Score = 608 bits (1568), Expect = e-173, Method: Compositional matrix adjust.
Identities = 319/640 (49%), Positives = 411/640 (64%), Gaps = 22/640 (3%)
Query: 79 TPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVF 138
TP+LD P RL++L ++L QLA E+R+EL VS T L + L VELTVALHHVF
Sbjct: 6 TPLLDKAPTPDRLRALPEQDLPQLAEELRTELIDAVSTTGGHLGAGLGVVELTVALHHVF 65
Query: 139 HAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSV 198
+ P D+I+WDVG Q Y HKILTGRR I TLR+ G+SG+T R+ESEYDPF A H S+
Sbjct: 66 NTPYDRIIWDVGHQAYPHKILTGRRDRIRTLRQAGGLSGFTKRAESEYDPFGAAHSSTSI 125
Query: 199 SAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHP 258
SAGLGMAVA ++ G++ ++ VI +G+ AG AYEAM+NAG LD+ +IVILND+ S+ P
Sbjct: 126 SAGLGMAVASELSGEKRNVIAVIGDGSMSAGMAYEAMNNAGALDARLIVILNDNDMSIAP 185
Query: 259 KIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIG 318
A+S+ L+R+ S +++R +RE AK + +++ + + + A K +EYAR
Sbjct: 186 --------PTGAMSAYLARLVSGRTYRSVREAAKQVAQKLPKFLQDKARKSEEYARAFF- 236
Query: 319 PQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKS 378
G TLFEELG YY+GP+DGHN++ L+ VL+ V GPVL+HVVT++ + +
Sbjct: 237 -TGGTLFEELGFYYVGPIDGHNLDHLLPVLKNVRDT-QKGPVLIHVVTQKGK---GYAPA 291
Query: 379 EAIEKQQEGASDSNSL------PFGNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDL 432
EA + G + + + P N + +Y F +L+ EA D IV V A M
Sbjct: 292 EAAADKYHGVNKFDVITGKQAKPPAN-APSYTKIFGTSLIEEARHDDKIVAVTAAMPTGT 350
Query: 433 SLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQ 492
L LF E FP+R FDVG+AEQHAVTF+AGLA G KPFC I S FLQR YDQVV+DV Q
Sbjct: 351 GLDLFGEAFPKRVFDVGIAEQHAVTFAAGLASEGYKPFCAIYSTFLQRGYDQVVHDVSIQ 410
Query: 493 RLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDR 552
LPVRF I AGLVG+DGPT G+FD F++ LP +VMA SDE EL MV T A D+
Sbjct: 411 NLPVRFPIDRAGLVGADGPTHAGSFDTGFLAALPGFVVMAASDEAELRHMVRTAAEYDEG 470
Query: 553 PVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKL 612
P+ FRYPRG V DLP RG +EIGKG+++ EG VALL +G +Q CL A L
Sbjct: 471 PISFRYPRGDGVGVDLP-ERGSVLEIGKGRIVREGTKVALLSFGTRLQECLAAAEELGAT 529
Query: 613 GIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVK 672
G+ TVADARF KPLD L+R L + H L+ VEEG++GGFGSHV F+A DGLLD G+K
Sbjct: 530 GLSTTVADARFAKPLDHDLIRRLAREHEVLVMVEEGAVGGFGSHVLQFLATDGLLDRGLK 589
Query: 673 WRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 712
R + LPD Y +H P A AGL I T + L R
Sbjct: 590 VRALTLPDIYQDHGKPDAMYAEAGLDRTGIVRTVFAALHR 629
|
Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP). Brucella suis (strain ATCC 23445 / NCTC 10510) (taxid: 470137) EC: 2 EC: . EC: 2 EC: . EC: 1 EC: . EC: 7 |
| >sp|Q11KE0|DXS_MESSB 1-deoxy-D-xylulose-5-phosphate synthase OS=Mesorhizobium sp. (strain BNC1) GN=dxs PE=3 SV=1 | Back alignment and function description |
|---|
Score = 608 bits (1568), Expect = e-173, Method: Compositional matrix adjust.
Identities = 311/645 (48%), Positives = 425/645 (65%), Gaps = 24/645 (3%)
Query: 79 TPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVF 138
TP+L+ V P LK + ++L QLA E+R+E+ VS+T L + L VELTVALH++F
Sbjct: 20 TPLLNRVRFPSDLKQIPEEDLPQLAEELRAEMIDAVSQTGGHLGAGLGVVELTVALHYIF 79
Query: 139 HAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSV 198
P D+++WDVG Q Y HKILTGRR I TLR++DG+SG+T RSESEYDPF A H S+
Sbjct: 80 DTPHDRLIWDVGHQAYPHKILTGRRDRIRTLRQEDGLSGFTKRSESEYDPFGAAHSSTSI 139
Query: 199 SAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHP 258
SAGLGMAVAR++ G + ++ VI +G AG AYEAM+NAG LD+ +IVILND+ S+ P
Sbjct: 140 SAGLGMAVARELSGGQRHVIAVIGDGALSAGMAYEAMNNAGALDARLIVILNDNDMSIAP 199
Query: 259 KIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIG 318
A+S+ L+R+ S +++R +R+V K +T +G+ + E+ARG +
Sbjct: 200 --------PTGAMSTYLARLASGRAYRGIRDVGKKLTSHLGKSFDRAITRAVEHARGFV- 250
Query: 319 PQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKS 378
G TLFEE+G ++IGP+DGH++E L+ VL+ V G+ GPVL+HVVT++ + +
Sbjct: 251 -TGGTLFEEMGFFHIGPIDGHDLEALVPVLRNVRDNGT-GPVLIHVVTQKGK---GYPPA 305
Query: 379 EAIEKQQEGASDSNSL-------PFGNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMD 431
EA + G + + + P G + +Y F +ALV EA +DK IV + A M
Sbjct: 306 EAAADKYHGVAKFDVITGAQAKSPAG--APSYTKVFAQALVQEAREDKRIVAITAAMPSG 363
Query: 432 LSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQ 491
L LF+++FP+R FDVG+AEQHAVTF+AGLA G +PF I S FLQRAYDQVV+DV
Sbjct: 364 TGLDLFEKEFPDRSFDVGIAEQHAVTFAAGLATEGYRPFAAIYSTFLQRAYDQVVHDVAI 423
Query: 492 QRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDD 551
Q LPVRF I AG VG+DG T CGAFD+ +++ LPNM+VMA +DE EL MV T A D+
Sbjct: 424 QNLPVRFAIDRAGFVGADGATHCGAFDVAYLATLPNMVVMAAADEAELKHMVRTAADHDE 483
Query: 552 RPVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSK 611
P+ FRYPRG LP RG ++IGKG+++ EG +ALL G + +C+ A L
Sbjct: 484 GPIAFRYPRGEGTGVPLP-QRGEILKIGKGRIVREGSKIALLSLGTRLADCMIAAEELEA 542
Query: 612 LGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGV 671
G+ TVADARF KPLD L+R L + H L+TVEEGSIGGFG+HV HF+A +GLL++G+
Sbjct: 543 AGLSTTVADARFAKPLDADLIRRLAREHEVLVTVEEGSIGGFGAHVLHFLAHEGLLENGL 602
Query: 672 KWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTREA 716
K RP+V+PD +++ A P + A AGL I T + LG+ +A
Sbjct: 603 KVRPLVMPDIFMDQAKPEKMYAKAGLDAAGIVKTVFAALGQAEQA 647
|
Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP). Mesorhizobium sp. (strain BNC1) (taxid: 266779) EC: 2 EC: . EC: 2 EC: . EC: 1 EC: . EC: 7 |
| >sp|Q89RW1|DXS_BRAJA 1-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrhizobium japonicum (strain USDA 110) GN=dxs PE=3 SV=1 | Back alignment and function description |
|---|
Score = 606 bits (1563), Expect = e-172, Method: Compositional matrix adjust.
Identities = 308/640 (48%), Positives = 419/640 (65%), Gaps = 20/640 (3%)
Query: 79 TPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVF 138
TP+LD + P L+ L I++++Q+A E+R E VS T + L VELT A+H+VF
Sbjct: 26 TPLLDTIRTPDDLRKLKIEQVRQVADELRQETIDAVSVTGGHFGAGLGVVELTTAIHYVF 85
Query: 139 HAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSV 198
P D+++WDVG Q Y HKILTGRR I TLR G+SG+T RSES+YDPF A H S+
Sbjct: 86 DTPRDRLIWDVGHQAYPHKILTGRRDRIRTLRTGGGLSGFTKRSESDYDPFGAAHSSTSI 145
Query: 199 SAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHP 258
SAGLGMAVARD+ G + ++ VI +G AG AYEAM+NAG ++S +IVILND+ S+ P
Sbjct: 146 SAGLGMAVARDLSGGKNNVIAVIGDGAMSAGMAYEAMNNAGAMNSRLIVILNDNDMSIAP 205
Query: 259 KIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIG 318
+ A+S+ LSR+ S K++R LRE AK + KR+ + + A +V+EY+RG +
Sbjct: 206 --------PVGAMSAYLSRLYSGKTYRTLREAAKQINKRLPKIIANRANRVEEYSRGFM- 256
Query: 319 PQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENR-----RAE 373
G TLFEELG YY+GP+DGHN++ L+ VL+ V + GP+LVHVVT++ + A
Sbjct: 257 MDGGTLFEELGFYYVGPIDGHNLDHLLPVLKNVRDM-EEGPILVHVVTQKGKGYGPAEAS 315
Query: 374 DTQKSEAIEKQQEGASDSNSLPFGNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLS 433
+ ++ + + + P + Y + F ++LV EA+KD+ IV + A M
Sbjct: 316 ADKYHAVVKFDVATGTQAKAKP---NAPAYQNVFGQSLVKEAQKDEKIVAITAAMPSGTG 372
Query: 434 LQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQR 493
+ +F + FP+R FDVG+AEQHAVTF+AGLA G KPFC I S FLQR YDQ+V+DV Q
Sbjct: 373 VDIFNKAFPDRTFDVGIAEQHAVTFAAGLASEGYKPFCAIYSTFLQRGYDQIVHDVAIQN 432
Query: 494 LPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRP 553
LPVRF I AGLVG+DG T G+FD ++ CLPNM++MA +DE ELV MVAT +IDDRP
Sbjct: 433 LPVRFAIDRAGLVGADGATHAGSFDNAYLGCLPNMVIMAAADEAELVHMVATQVAIDDRP 492
Query: 554 VCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLG 613
RYPRG ++P GIP+EIGKG+++ +G +ALL +G + C KA L+ G
Sbjct: 493 SSLRYPRGEGRGIEMPEV-GIPLEIGKGRMIRQGSKIALLSFGTRLAECEKAADELAAHG 551
Query: 614 IDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSG-VK 672
+ T+ADARF KPLD +LV +L ++H LIT+EEGS+GGFGSHV+ F+ G LDSG VK
Sbjct: 552 LSTTIADARFMKPLDTELVLKLARDHEILITIEEGSVGGFGSHVAQFLTDQGALDSGMVK 611
Query: 673 WRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 712
+R +VLPD + +H +P A AGL I A LG+
Sbjct: 612 FRTMVLPDVFQDHDTPAAMYARAGLDAKGIVAKVFEALGK 651
|
Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP). Bradyrhizobium japonicum (strain USDA 110) (taxid: 224911) EC: 2 EC: . EC: 2 EC: . EC: 1 EC: . EC: 7 |
| >sp|A6WWC4|DXS_OCHA4 1-deoxy-D-xylulose-5-phosphate synthase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=dxs PE=3 SV=1 | Back alignment and function description |
|---|
Score = 605 bits (1560), Expect = e-172, Method: Compositional matrix adjust.
Identities = 319/640 (49%), Positives = 407/640 (63%), Gaps = 22/640 (3%)
Query: 79 TPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVF 138
TP+LD P L++L +L QLA E+R+EL +VS T L + L VELTVALHHVF
Sbjct: 6 TPLLDKAPIPEALRALPESDLPQLAQELRAELIDVVSTTGGHLGAGLGVVELTVALHHVF 65
Query: 139 HAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSV 198
P D+I+WDVG Q Y HKILTGRR I TLR+ G+SG+T R+ESEYDPF A H S+
Sbjct: 66 DTPHDRIIWDVGHQAYPHKILTGRRDRIRTLRQTGGLSGFTKRTESEYDPFGAAHSSTSI 125
Query: 199 SAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHP 258
SAGLGMAVA D+ G++ ++ VI +G+ AG AYEAM+NAG LD+ +IVILND+ S+ P
Sbjct: 126 SAGLGMAVASDLSGEKRNVIAVIGDGSMSAGMAYEAMNNAGALDARLIVILNDNDMSIAP 185
Query: 259 KIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIG 318
A+S+ L+R+ S K++R +RE AK + K++ + + + A K +EYAR
Sbjct: 186 --------PTGAMSAYLARLVSGKTYRSVREAAKQVAKKLPKFLQDKARKSEEYARAFF- 236
Query: 319 PQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKS 378
G TLFEELG YY+GP+DGHN++ L+ +L+ V GPVL+HVVT++ + +
Sbjct: 237 -TGGTLFEELGFYYVGPIDGHNLDHLLPILKNVRDT-QEGPVLIHVVTQKGK---GYAPA 291
Query: 379 EAIEKQQEGA------SDSNSLPFGNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDL 432
EA + G + S P N + +Y F +L+ EA D IV + A M
Sbjct: 292 EAAADKYHGVNKFDVITGKQSKPPAN-APSYTKIFGTSLIEEARHDDRIVAITAAMPSGT 350
Query: 433 SLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQ 492
L LF E FP+R FDVG+AEQHAVTF+AGLA G KPFC I S FLQR YDQVV+DV Q
Sbjct: 351 GLDLFGEVFPQRTFDVGIAEQHAVTFAAGLASEGYKPFCAIYSTFLQRGYDQVVHDVSIQ 410
Query: 493 RLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDR 552
LPVRF I AGLVG+DGPT G+FD F++ LP +VMA SDE EL MV T A D+
Sbjct: 411 NLPVRFPIDRAGLVGADGPTHAGSFDTGFLAALPGFVVMAASDEAELRHMVRTAAEYDEG 470
Query: 553 PVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKL 612
P+ FRYPRG V DLP RG +EIGKG+++ EG VALL +G +Q CL A L
Sbjct: 471 PISFRYPRGDGVGVDLP-ERGQLLEIGKGRIVREGTKVALLSFGTRLQECLAAADELGAA 529
Query: 613 GIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVK 672
G+ TVADARF KPLD L+R L + H L+ VEEG++GGF SHV F+A DGLLD G+K
Sbjct: 530 GLSTTVADARFAKPLDHDLIRRLAREHEVLVMVEEGAVGGFASHVLQFLATDGLLDRGLK 589
Query: 673 WRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 712
R + LPD Y +H P A AGL I + LGR
Sbjct: 590 VRALTLPDTYQDHGKPDAMYAEAGLDRTGIVHAVFAALGR 629
|
Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP). Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) (taxid: 439375) EC: 2 EC: . EC: 2 EC: . EC: 1 EC: . EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 721 | ||||||
| 255546609 | 717 | 1-deoxyxylulose-5-phosphate synthase, pu | 0.994 | 1.0 | 0.776 | 0.0 | |
| 224089136 | 657 | predicted protein [Populus trichocarpa] | 0.907 | 0.995 | 0.813 | 0.0 | |
| 449441938 | 717 | PREDICTED: 1-deoxy-D-xylulose-5-phosphat | 0.993 | 0.998 | 0.736 | 0.0 | |
| 359476100 | 719 | PREDICTED: probable 1-deoxy-D-xylulose-5 | 0.993 | 0.995 | 0.738 | 0.0 | |
| 357466311 | 708 | hypothetical protein MTR_3g107740 [Medic | 0.979 | 0.997 | 0.726 | 0.0 | |
| 356518258 | 716 | PREDICTED: probable 1-deoxy-D-xylulose-5 | 0.981 | 0.988 | 0.720 | 0.0 | |
| 356509936 | 716 | PREDICTED: probable 1-deoxy-D-xylulose-5 | 0.980 | 0.987 | 0.718 | 0.0 | |
| 408537469 | 712 | 1-deoxy-D-xylulose-5-phosphate synthase | 0.979 | 0.991 | 0.714 | 0.0 | |
| 224141855 | 612 | predicted protein [Populus trichocarpa] | 0.840 | 0.990 | 0.806 | 0.0 | |
| 15239030 | 700 | 1-deoxy-D-xylulose 5-phosphate synthase | 0.965 | 0.994 | 0.693 | 0.0 |
| >gi|255546609|ref|XP_002514364.1| 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis] gi|223546820|gb|EEF48318.1| 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1171 bits (3029), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 560/721 (77%), Positives = 635/721 (88%), Gaps = 4/721 (0%)
Query: 1 MVTPSAKYPLELPLTAHCHGTLDQRKIEFLSSNISRELEISRINLCPSSSSITSSKLVTV 60
M T S +YP +TAH K++ LSS+ ++ S +NL S+SIT+SK V
Sbjct: 1 MGTASTQYPY--GITAHSFAKFGH-KLDTLSSSFPNKVGFSSVNLYQGSASITNSKGF-V 56
Query: 61 SRICALPDIDDFFWDKEPTPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKS 120
RIC++PD+DD FW+K PTPILD+VENP+ L +LT++ELK+LA EIR ELSSI+S+T+K+
Sbjct: 57 GRICSVPDLDDIFWEKVPTPILDVVENPIHLNNLTLQELKELADEIREELSSIMSRTQKA 116
Query: 121 LKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTS 180
K+SLA VELTVA+HHVFHAPVDKILWDVGEQTYAHKILTGRRSL+HTLR+K+G+SG+TS
Sbjct: 117 FKASLAVVELTVAIHHVFHAPVDKILWDVGEQTYAHKILTGRRSLMHTLRQKNGLSGFTS 176
Query: 181 RSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGY 240
+SESEYDPF AGHGCNSVSAGLGMAVARD+KGKRE +VTVISNGTTMAGQ YEAMSNAGY
Sbjct: 177 QSESEYDPFGAGHGCNSVSAGLGMAVARDMKGKRERVVTVISNGTTMAGQVYEAMSNAGY 236
Query: 241 LDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGR 300
+DSNMIVILNDSRHSLHPKIEE PKTS+NALSSTLSR+QSSKSFR+ RE AKG+TKRIGR
Sbjct: 237 IDSNMIVILNDSRHSLHPKIEEGPKTSLNALSSTLSRLQSSKSFRKFREAAKGVTKRIGR 296
Query: 301 GMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPV 360
GMHE AAKVDEYARGMIGP GSTLFEELGLYYIGPVDGHNIEDL+ VLQEVASL SMGPV
Sbjct: 297 GMHELAAKVDEYARGMIGPLGSTLFEELGLYYIGPVDGHNIEDLVCVLQEVASLDSMGPV 356
Query: 361 LVHVVTEENRRAEDTQKSEAIEKQQEGASDSNSLPFGNYSRTYDDCFIEALVMEAEKDKD 420
L+HVVTEENRR ++ QK + +E QEG+S+S+ + ++RTY DCF+EAL+MEAEKDKD
Sbjct: 357 LIHVVTEENRRRDNKQKIDTLENLQEGSSNSDPFLYSIHTRTYSDCFVEALIMEAEKDKD 416
Query: 421 IVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQR 480
IV+VHAGMEM+ + QL QE++P+R+FDVGMAEQHAVTFSAGL+CGGLKPFCIIPS FLQR
Sbjct: 417 IVIVHAGMEMETAFQLIQERYPDRFFDVGMAEQHAVTFSAGLSCGGLKPFCIIPSTFLQR 476
Query: 481 AYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELV 540
AYDQVV+DVDQQR+PVRFVITSAGLVGSDGP QCGAFDITFMSCLPNMIVMAPSDEDELV
Sbjct: 477 AYDQVVHDVDQQRIPVRFVITSAGLVGSDGPMQCGAFDITFMSCLPNMIVMAPSDEDELV 536
Query: 541 DMVATVASIDDRPVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQ 600
DMVAT IDD PVCFRYPRGAIV TD GIPIEIGKGKVL+EGKDVALLGYGAMVQ
Sbjct: 537 DMVATAVQIDDHPVCFRYPRGAIVGTDHYMRIGIPIEIGKGKVLIEGKDVALLGYGAMVQ 596
Query: 601 NCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHF 660
NCLKAR LLSKLGI+VTVADARFCKPLD+KL+R+LC+NH FL+TVEEGS+GGFGSHV+ F
Sbjct: 597 NCLKARHLLSKLGIEVTVADARFCKPLDMKLLRQLCENHAFLVTVEEGSVGGFGSHVAQF 656
Query: 661 IALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTREALLLM 720
++LDG LD VKWRPIVLPD YIEHA P +QL LAGLTGHHIAAT L LLGRTREALLLM
Sbjct: 657 LSLDGQLDGKVKWRPIVLPDTYIEHALPKEQLNLAGLTGHHIAATVLRLLGRTREALLLM 716
Query: 721 C 721
C
Sbjct: 717 C 717
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224089136|ref|XP_002308644.1| predicted protein [Populus trichocarpa] gi|222854620|gb|EEE92167.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1114 bits (2881), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 536/659 (81%), Positives = 592/659 (89%), Gaps = 5/659 (0%)
Query: 65 ALPDIDDFFWDKEPTPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSS 124
ALPDIDD F D TP+LD+VENP+ LK+LTIKELK LA EIRSELSSI+SKT+ LK+S
Sbjct: 1 ALPDIDDIFSDLIATPLLDVVENPIHLKNLTIKELKLLASEIRSELSSIMSKTQNDLKAS 60
Query: 125 LAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSES 184
LA VELTVA+HHVFHAPVDKILWDVGEQTYAHKILTGRRSL+HTLR+KDG+SG+TSRSES
Sbjct: 61 LAVVELTVAIHHVFHAPVDKILWDVGEQTYAHKILTGRRSLMHTLRQKDGLSGFTSRSES 120
Query: 185 EYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSN 244
EYDPF AGHGCNS+SAG+GMA+ARDIKGKRE IVTVI NGTTMAGQ YEAM NAGYLD+N
Sbjct: 121 EYDPFGAGHGCNSISAGIGMAIARDIKGKRERIVTVIGNGTTMAGQVYEAMGNAGYLDTN 180
Query: 245 MIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHE 304
MIVILNDSRHSLHPKIEE KTSI ALSSTLS++QSSKSFR+LREVAKG+TKRIG MHE
Sbjct: 181 MIVILNDSRHSLHPKIEEGSKTSITALSSTLSKLQSSKSFRRLREVAKGVTKRIG--MHE 238
Query: 305 WAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHV 364
AAKVDEYARGM+GP GSTLFEELGLYYIGPVDGHNI +L+ VLQEV+SL SMGPVL+HV
Sbjct: 239 LAAKVDEYARGMMGPLGSTLFEELGLYYIGPVDGHNIGELVCVLQEVSSLDSMGPVLIHV 298
Query: 365 VTEENRRAEDTQKSEAIEKQQEG---ASDSNSLPFGNYSRTYDDCFIEALVMEAEKDKDI 421
+TEEN+ E Q SEA+E QQEG + DSN L + ++RTY DCF+EAL+MEAEKDKDI
Sbjct: 299 ITEENQCTEYKQPSEAMENQQEGILSSFDSNELLYSMHARTYSDCFVEALIMEAEKDKDI 358
Query: 422 VVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRA 481
V+VHAGMEMD S QLF+E+FP+R+FD+GMAEQHAVTFSAGL+CGGLKPFCIIPSAF+QRA
Sbjct: 359 VIVHAGMEMDPSFQLFRERFPDRFFDLGMAEQHAVTFSAGLSCGGLKPFCIIPSAFMQRA 418
Query: 482 YDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVD 541
YDQVV+DVD+QR+PVRFVITSAGLVGSDGPT CGAFDITFMSCLPNMIVMAPSDEDELVD
Sbjct: 419 YDQVVHDVDRQRIPVRFVITSAGLVGSDGPTMCGAFDITFMSCLPNMIVMAPSDEDELVD 478
Query: 542 MVATVASIDDRPVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQN 601
MVAT DD P+CFRYPRGAIV TD GIPIEIGKGK+L+EGKDVALLGYG MVQN
Sbjct: 479 MVATAVHSDDHPICFRYPRGAIVGTDHYTRSGIPIEIGKGKILIEGKDVALLGYGEMVQN 538
Query: 602 CLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFI 661
CL+ARALLSKLGI+VTVADARFCKPLD+KL+R+LC+NH FL+TVEEGSIGGFGSHVS FI
Sbjct: 539 CLRARALLSKLGIEVTVADARFCKPLDMKLLRQLCENHAFLVTVEEGSIGGFGSHVSQFI 598
Query: 662 ALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTREALLLM 720
ALDG LD KWRPIVLPD YIEHA P +QLALAGLTGHHIAAT L LLGRTREALLLM
Sbjct: 599 ALDGQLDGRTKWRPIVLPDKYIEHALPKEQLALAGLTGHHIAATVLRLLGRTREALLLM 657
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449441938|ref|XP_004138739.1| PREDICTED: 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic-like [Cucumis sativus] gi|449499272|ref|XP_004160772.1| PREDICTED: 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1093 bits (2828), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 532/722 (73%), Positives = 613/722 (84%), Gaps = 6/722 (0%)
Query: 1 MVTPSAKYPLELPLTAHCHGTLDQRKIEFLSSNISRELEISRINLCPSSSSITS-SKLVT 59
M T S YP + ++ + L RK+EF SN E SRIN P+S S+ S +
Sbjct: 1 MGTASTGYPFGTAVHSYGNSALLSRKLEFSRSNFPFPAEFSRIN--PNSGSVFHFSSKSS 58
Query: 60 VSRICALPDIDDFFWDKEPTPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEK 119
V +I +LPDID+ FWDK PTP+LD+++NP+ LK+L++KELKQLA EIRSEL+S +S
Sbjct: 59 VCKIHSLPDIDNIFWDKVPTPLLDVIDNPIHLKNLSLKELKQLAEEIRSELASFLSNVPA 118
Query: 120 SLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYT 179
S K+SLA VELTVALHHVFHAPVDKILWD GE+TYAHKILTGRR L+ TL KK+G+SG T
Sbjct: 119 SYKASLAVVELTVALHHVFHAPVDKILWDAGEETYAHKILTGRRPLMSTLYKKNGLSGST 178
Query: 180 SRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAG 239
SR ESE+DPF A HGCNSVSAGLGMAVARDIKGKRE IVT+I+N +TM GQ YEAMSN G
Sbjct: 179 SRLESEFDPFGAAHGCNSVSAGLGMAVARDIKGKRERIVTIINNLSTMTGQIYEAMSNVG 238
Query: 240 YLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIG 299
YLDSNMIVILNDSRHSLHPK+++ KTS++ALSSTLSR+QSSKSFR+ RE AKG+TKRIG
Sbjct: 239 YLDSNMIVILNDSRHSLHPKLDDGSKTSVSALSSTLSRLQSSKSFRKFREAAKGVTKRIG 298
Query: 300 RGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGP 359
+GMHE AAKVD+YARGM+GP GSTLFEELGLYYIGPVDGHN+EDLI VLQEVASL SMGP
Sbjct: 299 KGMHELAAKVDQYARGMMGPSGSTLFEELGLYYIGPVDGHNMEDLICVLQEVASLDSMGP 358
Query: 360 VLVHVVTEENRRAEDTQKSEAIEKQQEGASDSNSLPFGNYSRTYDDCFIEALVMEAEKDK 419
VLVHVVTEEN +E ++ +Q +G + + L +G SRTY DCF EALV+EAEKDK
Sbjct: 359 VLVHVVTEENY-SEGYKRVAG--RQLDGLYNIDPLLYGIDSRTYGDCFAEALVVEAEKDK 415
Query: 420 DIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQ 479
IV VHAGM+M+ S+QLF+E+FP+++FDVGMAEQHAVTF+AGL+CGGLKPFC+IPSAFLQ
Sbjct: 416 SIVTVHAGMQMEPSIQLFRERFPDKFFDVGMAEQHAVTFAAGLSCGGLKPFCVIPSAFLQ 475
Query: 480 RAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDEL 539
RAYDQVV+DVDQQR+PVRFVITSAGLVGSDGPTQCGAFDIT+MSCLPNMIVMAPSDE+EL
Sbjct: 476 RAYDQVVHDVDQQRIPVRFVITSAGLVGSDGPTQCGAFDITYMSCLPNMIVMAPSDENEL 535
Query: 540 VDMVATVASIDDRPVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMV 599
V MVAT A IDD+PVCFRYPRG+IV T+ G+PIEIGKG+VL EGKD+ALLGYGAMV
Sbjct: 536 VHMVATAARIDDQPVCFRYPRGSIVTTNNLALEGVPIEIGKGRVLAEGKDIALLGYGAMV 595
Query: 600 QNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSH 659
QNCL ARALLSK G++VTVADARFCKPLDI L+R+LC NH FLITVEEGS+GGFGSHV+
Sbjct: 596 QNCLNARALLSKFGVEVTVADARFCKPLDIALLRQLCDNHAFLITVEEGSVGGFGSHVAQ 655
Query: 660 FIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTREALLL 719
FIALDG LD VKWRPIVLPDNYIE ASP QQL+LAGLTG+HIAATALSLLGR REALL+
Sbjct: 656 FIALDGRLDGRVKWRPIVLPDNYIEQASPQQQLSLAGLTGNHIAATALSLLGRPREALLM 715
Query: 720 MC 721
MC
Sbjct: 716 MC 717
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359476100|ref|XP_002282428.2| PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic-like [Vitis vinifera] gi|296081990|emb|CBI20995.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1084 bits (2804), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 533/722 (73%), Positives = 605/722 (83%), Gaps = 6/722 (0%)
Query: 1 MVTPSAKYPLELPLTAHCHGTLD--QRKIEFLSSNISRELEISRINLCPSSSSITSSKLV 58
M T A+YP E+ TAH K +F S N +L+ SR+NL P SSS TSSK
Sbjct: 1 MGTACAQYPFEV--TAHFQEKCRVLHPKTKFSSFNFPPKLDSSRMNLYPCSSSTTSSKRY 58
Query: 59 TVSRICALPDIDDFFWDKEPTPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTE 118
V +IC+LP+ DFFWD+ PTP+LD+VE+P+ LK+LT KELKQLA EIR EL I+SK +
Sbjct: 59 -VGQICSLPEFGDFFWDRIPTPMLDMVESPMCLKNLTPKELKQLADEIRVELFCIMSKMQ 117
Query: 119 KSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGY 178
K K+SLA VELTVA+H++FHAP+DKILWDVGE TYAHKILTGRR+L+HTLR++ G+SG+
Sbjct: 118 KPFKASLAVVELTVAIHYIFHAPMDKILWDVGEVTYAHKILTGRRALMHTLRERGGLSGF 177
Query: 179 TSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNA 238
TSRSESEYDPF AGHGC+S+SAGLGMAVARD+KGKRE IVTVI NGTTMAGQ YEAM NA
Sbjct: 178 TSRSESEYDPFGAGHGCSSISAGLGMAVARDLKGKRERIVTVIGNGTTMAGQVYEAMGNA 237
Query: 239 GYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRI 298
GYLD+NM+VILNDSRHSLHPK+E+ T INALSSTL+++QSSKSFR+ RE AKG+TKRI
Sbjct: 238 GYLDTNMVVILNDSRHSLHPKLEDGQATPINALSSTLTKLQSSKSFRKFREAAKGVTKRI 297
Query: 299 GRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMG 358
G+GMHE AAKVDEYARGM+GP G+TLFEELGLYYIGPVDGHNIEDLISVLQ VASL G
Sbjct: 298 GKGMHELAAKVDEYARGMVGPLGATLFEELGLYYIGPVDGHNIEDLISVLQGVASLDPTG 357
Query: 359 PVLVHVVTEENRRAEDTQKSEAIEKQQEGASDSNSLPFGNYSRTYDDCFIEALVMEAEKD 418
PVLVHV+T+E + E +QKS +G S P+ R Y DCF+EALV EAEKD
Sbjct: 358 PVLVHVITKEYQGVEASQKSMISNGHLKGFYTSELSPY-PLPRMYSDCFVEALVNEAEKD 416
Query: 419 KDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFL 478
KDIVVVHAGM M+ LQLFQEKFP ++FDVGMAEQHAVTFSAGLACGGLKPFCIIPS FL
Sbjct: 417 KDIVVVHAGMGMEPPLQLFQEKFPYKFFDVGMAEQHAVTFSAGLACGGLKPFCIIPSTFL 476
Query: 479 QRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDE 538
QRAYDQVV+DVD+QR+PVRF ITSAGLVGSDGPT+CGAFDITFMSCLPNMIVMAPSDE+E
Sbjct: 477 QRAYDQVVHDVDRQRIPVRFAITSAGLVGSDGPTRCGAFDITFMSCLPNMIVMAPSDENE 536
Query: 539 LVDMVATVASIDDRPVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAM 598
L+ MVAT A +DDRP+CFRYPRGA + GIPIEIGKGKVL+EGKDVALLGYG M
Sbjct: 537 LMHMVATAAHVDDRPICFRYPRGATAGMSNSIWNGIPIEIGKGKVLIEGKDVALLGYGVM 596
Query: 599 VQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVS 658
VQNCLKA +LLS+LGI VTVADARFCKPLDI+LVRELC+NH FLITVEEGS+GGFGSHV+
Sbjct: 597 VQNCLKAWSLLSELGIRVTVADARFCKPLDIQLVRELCENHAFLITVEEGSVGGFGSHVA 656
Query: 659 HFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTREALL 718
FIALDG LD +KWRPI LPDNYIE ASP +QLA+AGLTGHHIAAT LSLLGR REALL
Sbjct: 657 QFIALDGKLDGRIKWRPIALPDNYIEQASPEEQLAIAGLTGHHIAATVLSLLGRNREALL 716
Query: 719 LM 720
LM
Sbjct: 717 LM 718
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357466311|ref|XP_003603440.1| hypothetical protein MTR_3g107740 [Medicago truncatula] gi|355492488|gb|AES73691.1| hypothetical protein MTR_3g107740 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1078 bits (2789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 524/721 (72%), Positives = 606/721 (84%), Gaps = 15/721 (2%)
Query: 1 MVTPSAKYPLELPLTAHCHGTLDQRKIEFLSSNISRELEISRINLCPSSSSITSSKLVTV 60
M T A+YP +P F S ++R L+ S S + +SS + +
Sbjct: 2 MGTVCARYPFVIP---------------FHSQTLTRRLDCSISQFPLSRITYSSSSRILI 46
Query: 61 SRICALPDIDDFFWDKEPTPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKS 120
R+C+ PDIDDF+W+K PTPILD V+NPL LK+L+ +ELKQLA EIR ELSSI+S T+
Sbjct: 47 HRVCSRPDIDDFYWEKVPTPILDTVQNPLCLKNLSQQELKQLAAEIRLELSSILSGTQIL 106
Query: 121 LKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTS 180
L S+A V+LTVA+HHVFHAPVDKILWDVG+QTYAHKILTGRRSL+ T+RKK+G+SG+TS
Sbjct: 107 LNPSMAVVDLTVAIHHVFHAPVDKILWDVGDQTYAHKILTGRRSLMKTIRKKNGLSGFTS 166
Query: 181 RSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGY 240
R ESEYD F AGHGCNS+SAGLGMAVARDIKG+RE +V VISN TTM+GQ YEAMSNAGY
Sbjct: 167 RFESEYDAFGAGHGCNSISAGLGMAVARDIKGRRERVVAVISNWTTMSGQVYEAMSNAGY 226
Query: 241 LDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGR 300
LDSN++VILNDSRHSL PKIE+ KTS+NALSSTLSR+QSSKSFR+ RE AKG+TKRIGR
Sbjct: 227 LDSNLVVILNDSRHSLLPKIEDGSKTSVNALSSTLSRLQSSKSFRKFREAAKGVTKRIGR 286
Query: 301 GMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPV 360
GMHE AAKVDEYARGM+GP GSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL SMGPV
Sbjct: 287 GMHELAAKVDEYARGMMGPPGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLDSMGPV 346
Query: 361 LVHVVTEENRRAEDTQKSEAIEKQQEGASDSNSLPFGNYSRTYDDCFIEALVMEAEKDKD 420
L+HV+T EN+ E +KS +KQQ+ + + L +TY DCF+E+LV EAEKDKD
Sbjct: 347 LIHVITNENQVEEHNKKSYMTDKQQDESVSFDLLDNAGRLQTYGDCFVESLVAEAEKDKD 406
Query: 421 IVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQR 480
IVVVHAG+ + SL+LF EKFP+R F+VG+AEQHAVTF++GL+CGGLKPFCIIPS+FLQR
Sbjct: 407 IVVVHAGITTEPSLKLFMEKFPDRIFNVGIAEQHAVTFASGLSCGGLKPFCIIPSSFLQR 466
Query: 481 AYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELV 540
AYDQVV+DVDQQ++PVRFVITSAGLVGSDGP QCGAFDITFMSCLPNMIVMAPSDE ELV
Sbjct: 467 AYDQVVHDVDQQKVPVRFVITSAGLVGSDGPLQCGAFDITFMSCLPNMIVMAPSDEAELV 526
Query: 541 DMVATVASIDDRPVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQ 600
MVAT A I+D+PVCFRYPRGA+V D GIPIEIGKG++LVEGKDVALLGYG+MVQ
Sbjct: 527 HMVATAAHINDQPVCFRYPRGALVGKDEAILDGIPIEIGKGRILVEGKDVALLGYGSMVQ 586
Query: 601 NCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHF 660
NCLKA +LL+ LGI+VTVADARFCKPLDI+L+R+LC++H+FLITVEEGSIGGFGSHV+ F
Sbjct: 587 NCLKAYSLLANLGIEVTVADARFCKPLDIELLRQLCKHHSFLITVEEGSIGGFGSHVAQF 646
Query: 661 IALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTREALLLM 720
IALDGLLD +KWRPIVLPD+YIEHASP QQL AGLTGHHIAATALSLLGRTREAL M
Sbjct: 647 IALDGLLDRRIKWRPIVLPDSYIEHASPNQQLNQAGLTGHHIAATALSLLGRTREALSFM 706
Query: 721 C 721
C
Sbjct: 707 C 707
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356518258|ref|XP_003527796.1| PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1065 bits (2755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/722 (72%), Positives = 616/722 (85%), Gaps = 14/722 (1%)
Query: 3 TPSAKYPLELPLTAHCHGTLDQRKIEFLSSNISREL--EISRINLCPSSSSITSSKLVTV 60
TPS+ YP P +H R+++ +S L ++S I++CP S+S V
Sbjct: 5 TPSSTYPFGTPFHSH------TRRLDCSTSTSMFPLHSDLSTISMCPRSASKG-----LV 53
Query: 61 SRICALPDIDDFFWDKEPTPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKS 120
R+ A D DD+ +K PTPILD+VENPL LK+L++KELKQLAVEIRS+LSSI+S T+ S
Sbjct: 54 DRVYAQLDGDDYHREKVPTPILDMVENPLCLKNLSLKELKQLAVEIRSDLSSIMSGTQIS 113
Query: 121 LKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTS 180
K+S+A VELTVA+HHVF+APVDKILWDVG+QTYAHKILTGRRSL+ T+R+K+G+SG+TS
Sbjct: 114 PKASMAVVELTVAIHHVFNAPVDKILWDVGDQTYAHKILTGRRSLMTTMRRKNGLSGFTS 173
Query: 181 RSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGY 240
R ESEYD F AGHGCNS+SAGLGMAVARDIKG++E +V VISN TTMAGQAYEAMSNAGY
Sbjct: 174 RFESEYDAFGAGHGCNSISAGLGMAVARDIKGRQERVVAVISNWTTMAGQAYEAMSNAGY 233
Query: 241 LDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGR 300
LDSNM+VILNDSRHSL PKIEE PKTS+NALSSTLS++QSSKSFR+ RE AKG+TKRIGR
Sbjct: 234 LDSNMVVILNDSRHSLLPKIEEGPKTSVNALSSTLSKLQSSKSFRRFREAAKGVTKRIGR 293
Query: 301 GMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPV 360
GMHE AAKVDEYARGM+GP GSTLFEELGLYYIGPVDGHNIEDLI VLQEVASL SMGPV
Sbjct: 294 GMHELAAKVDEYARGMMGPLGSTLFEELGLYYIGPVDGHNIEDLICVLQEVASLDSMGPV 353
Query: 361 LVHVVTEENRRAEDTQKSE-AIEKQQEGASDSNSLPFGNYSRTYDDCFIEALVMEAEKDK 419
LVHV+T+EN+ +++QKS+ + E++ EG S+ L + +TY +CF+ LV EAEKDK
Sbjct: 354 LVHVITDENQGDDNSQKSDMSDEQKNEGFVKSDLLDNPVWPQTYGNCFVATLVAEAEKDK 413
Query: 420 DIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQ 479
DI+VVHAG+ M+ SL+LFQEKFP+R+FDVGMAEQHAVTF++GLACGGLKPFC+IPS+FLQ
Sbjct: 414 DIIVVHAGLTMEPSLELFQEKFPDRFFDVGMAEQHAVTFASGLACGGLKPFCVIPSSFLQ 473
Query: 480 RAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDEL 539
RAYDQVV+DVDQQR+PVRFVITSAGLVGSDGP +CGAFDI FMSCLPNMIVMAPSDE EL
Sbjct: 474 RAYDQVVHDVDQQRIPVRFVITSAGLVGSDGPLRCGAFDINFMSCLPNMIVMAPSDELEL 533
Query: 540 VDMVATVASIDDRPVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMV 599
+ MVAT I+++P+CFRYPRGA+V GIPI+IG+G+VLVEGKDVA LGYG+MV
Sbjct: 534 MHMVATATRINNQPICFRYPRGALVGEGYTIGDGIPIKIGRGRVLVEGKDVAFLGYGSMV 593
Query: 600 QNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSH 659
QNCLKA +LL+KLGI+VTVADARFCKPLDI L+R+LC++H+FL+TVEEGSIGGFGSHV+
Sbjct: 594 QNCLKAHSLLAKLGIEVTVADARFCKPLDIMLLRQLCKHHSFLVTVEEGSIGGFGSHVAQ 653
Query: 660 FIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTREALLL 719
FIA++GLLD +KWRPIVLPD YIEHASP +QL AGL+GHHIAATALSLLGRTREALL
Sbjct: 654 FIAVNGLLDGRIKWRPIVLPDRYIEHASPNEQLDQAGLSGHHIAATALSLLGRTREALLF 713
Query: 720 MC 721
MC
Sbjct: 714 MC 715
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356509936|ref|XP_003523698.1| PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1064 bits (2751), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 518/721 (71%), Positives = 614/721 (85%), Gaps = 14/721 (1%)
Query: 4 PSAKYPLELPLTAHCHGTLDQRKIEFLSSN--ISRELEISRINLCPSSSSITSSKLVTVS 61
PS+ YP +P +H R+++ +S ++S I++CP S+S V
Sbjct: 6 PSSAYPFGIPFHSH------SRRVDCSTSTSMFPIHADLSTISMCPRSASKG-----LVD 54
Query: 62 RICALPDIDDFFWDKEPTPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSL 121
++ A D DD++ +K PTPILD+VENPL LK+L+++ELKQLAVEIRS+LSSI+S T+ S
Sbjct: 55 QVYAQLDNDDYYREKVPTPILDMVENPLCLKNLSLQELKQLAVEIRSDLSSIMSGTQISP 114
Query: 122 KSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSR 181
K+S+A VELTVA+HHVF+APVDKILWDVG+QTYAHKILTGRRSL+ T+R+K+G+SG TSR
Sbjct: 115 KASMAVVELTVAIHHVFNAPVDKILWDVGDQTYAHKILTGRRSLMTTMRRKNGLSGVTSR 174
Query: 182 SESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYL 241
ESEYD F AGHGC+S+SAGLGMAVARDIKG+RE ++ VISN TTMAGQAYEAMSNAGYL
Sbjct: 175 FESEYDAFGAGHGCSSISAGLGMAVARDIKGRRERVIAVISNWTTMAGQAYEAMSNAGYL 234
Query: 242 DSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRG 301
DSNM+VILNDSRHSL PKIEE PKT +NALSSTLS++QSSKSFR+ RE AKG+TKRIGRG
Sbjct: 235 DSNMVVILNDSRHSLLPKIEEGPKTFVNALSSTLSKLQSSKSFRRFREAAKGVTKRIGRG 294
Query: 302 MHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVL 361
MHE AAKVDEYARGM+GP GSTLFEELGLYYIGPVDGHNIEDLI VLQEVASL SMGPVL
Sbjct: 295 MHELAAKVDEYARGMMGPLGSTLFEELGLYYIGPVDGHNIEDLICVLQEVASLDSMGPVL 354
Query: 362 VHVVTEENRRAEDTQKSEAIEKQQ-EGASDSNSLPFGNYSRTYDDCFIEALVMEAEKDKD 420
VHV+T+EN+ E++QKS+ + QQ EG+ S+SL +TY +CF+E LV+EAEKDKD
Sbjct: 355 VHVITDENQGDENSQKSDISDGQQDEGSVKSDSLDNPVRPQTYGNCFVETLVVEAEKDKD 414
Query: 421 IVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQR 480
IVVVHAG+ M+ SL+LFQEKFP+R+FDVGMAEQHAVTF++GLACGGLKPFC+I S+FLQR
Sbjct: 415 IVVVHAGLTMEPSLELFQEKFPDRFFDVGMAEQHAVTFASGLACGGLKPFCVIASSFLQR 474
Query: 481 AYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELV 540
AYDQVV+DVDQQR+PVRFVITSAGLVGSDGP QCGAFDI FMSCLPNMIVMAPSDE EL+
Sbjct: 475 AYDQVVHDVDQQRIPVRFVITSAGLVGSDGPLQCGAFDINFMSCLPNMIVMAPSDEVELM 534
Query: 541 DMVATVASIDDRPVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQ 600
MVAT I+ +P+CFRYPRGA+V GIPI+IG+G+VLVEGKDVA LGYG+MVQ
Sbjct: 535 HMVATATRINSQPICFRYPRGALVGRGYTISDGIPIKIGRGRVLVEGKDVAFLGYGSMVQ 594
Query: 601 NCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHF 660
NCLKA +LL+KLGI+VTVADARFCKPLDIKL+R+LC++H+FL+TVEEGSIGGFGS V+ F
Sbjct: 595 NCLKAHSLLAKLGIEVTVADARFCKPLDIKLLRQLCKHHSFLVTVEEGSIGGFGSQVAQF 654
Query: 661 IALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTREALLLM 720
IA++GLLD ++WRPIVLPD YIEHASP +QL AGL+GHHIAATALSLLGRTREALL M
Sbjct: 655 IAVNGLLDGRIQWRPIVLPDRYIEHASPNEQLDQAGLSGHHIAATALSLLGRTREALLFM 714
Query: 721 C 721
C
Sbjct: 715 C 715
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|408537469|gb|AFU75320.1| 1-deoxy-D-xylulose-5-phosphate synthase 1 [Aquilaria sinensis] | Back alignment and taxonomy information |
|---|
Score = 1048 bits (2710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/718 (71%), Positives = 600/718 (83%), Gaps = 12/718 (1%)
Query: 4 PSAKYPLELPLTAHCHGTLDQRKIEFLSSNISRELEISRINLCPSSSSITSSKLVTVSRI 63
P+ +YP + H HG R +++S + SR+ + P S S+ + +R
Sbjct: 5 PATQYPHGI--GGHFHGKFAYR------ADVSSSIFPSRLEI-PKYKSQFSNPKILANRT 55
Query: 64 CALPDIDDFFWDKEPTPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKS 123
ALPD D FF +K PTP+LD+VE+P+ LK+L+IKEL+QLA EIR ELSSI+ KT+KS+KS
Sbjct: 56 YALPDCDGFFGEKVPTPLLDVVESPIHLKNLSIKELRQLADEIRLELSSIIPKTQKSIKS 115
Query: 124 SLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSE 183
SLAAVELTVA+HHVF APVDKILWD EQT+AHKILTGRRS +++L K + + S+SE
Sbjct: 116 SLAAVELTVAIHHVFQAPVDKILWDSVEQTHAHKILTGRRSCLNSLTKTSNLPSFASQSE 175
Query: 184 SEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDS 243
+EYDPF AGHGC+S+SAGLGMA ARDIKGKRE +VTVI+N TTMAGQ YEAMSNAGYLD
Sbjct: 176 NEYDPFGAGHGCSSISAGLGMAAARDIKGKRERVVTVINNDTTMAGQVYEAMSNAGYLDC 235
Query: 244 NMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMH 303
NM+VILNDSRHSLHPKIEE PKTSIN LSSTLS+IQSSKSFR REVAKG+TKRIGRGMH
Sbjct: 236 NMVVILNDSRHSLHPKIEEGPKTSINMLSSTLSKIQSSKSFRTFREVAKGVTKRIGRGMH 295
Query: 304 EWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVH 363
EWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDL+ VLQEVASL S GPVLVH
Sbjct: 296 EWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLVGVLQEVASLDSTGPVLVH 355
Query: 364 VVTEENRRAE-DTQKSEAIEKQQEGASDSNSLPFGNYSRTYDDCFIEALVMEAEKDKDIV 422
V+TEEN + D +K++ + QQEG++ S S ++ RTY DCF+EAL+MEA +DKDIV
Sbjct: 356 VITEENEASNIDQKKTQGM--QQEGSTSSCSFLSTDHCRTYSDCFVEALLMEAVRDKDIV 413
Query: 423 VVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAY 482
VVHAGM ++ SL L+QE+FP+++FDVGMAEQHAVTF+AGL+ GGLKPFCIIPS FLQRAY
Sbjct: 414 VVHAGMGLEPSLHLYQERFPDKFFDVGMAEQHAVTFAAGLSRGGLKPFCIIPSTFLQRAY 473
Query: 483 DQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDM 542
DQVV+DVD+Q +PVRFV+T AGLVGSDGP Q GAFDITFMSCLPNMIVMAPS E+EL M
Sbjct: 474 DQVVHDVDRQMIPVRFVVTGAGLVGSDGPLQSGAFDITFMSCLPNMIVMAPSSEEELARM 533
Query: 543 VATVASIDDRPVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNC 602
VAT A IDD+P+CFRYPRGA+V T+ GIP++IG+GK+L+EGKDVALLGYGAMVQNC
Sbjct: 534 VATAAQIDDQPICFRYPRGAVVGTECYFPSGIPLQIGEGKLLIEGKDVALLGYGAMVQNC 593
Query: 603 LKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIA 662
LKA+ LLSKLG+DVTVADARFCKPLDI+L+R+LC+NH LITVEEGSIGGFGSHV+ F+A
Sbjct: 594 LKAQILLSKLGVDVTVADARFCKPLDIELLRKLCENHDILITVEEGSIGGFGSHVAQFLA 653
Query: 663 LDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTREALLLM 720
LDGLLD +KWRPIVLPD YIE A P +QL AGLTGHHIAATAL+LLGR REAL LM
Sbjct: 654 LDGLLDGRLKWRPIVLPDKYIEQALPGEQLEDAGLTGHHIAATALTLLGRNREALQLM 711
|
Source: Aquilaria sinensis Species: Aquilaria sinensis Genus: Aquilaria Family: Thymelaeaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224141855|ref|XP_002324277.1| predicted protein [Populus trichocarpa] gi|222865711|gb|EEF02842.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1023 bits (2646), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/614 (80%), Positives = 545/614 (88%), Gaps = 8/614 (1%)
Query: 114 VSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDV---GEQTYAHKILTGRRSLIHTLR 170
+SK +K K+SLAAVELTVA+HHVFHAPVDKILWD QTYAHKILTGRRSL+HTLR
Sbjct: 1 MSKAQKDFKASLAAVELTVAIHHVFHAPVDKILWDFLVSCRQTYAHKILTGRRSLMHTLR 60
Query: 171 KKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQ 230
+KDG+SG+TSRSESEYDPF AGHGCNS+SAGLGMAVARDIKGKRE IVTVI NGTTMAGQ
Sbjct: 61 QKDGLSGFTSRSESEYDPFGAGHGCNSISAGLGMAVARDIKGKREHIVTVIGNGTTMAGQ 120
Query: 231 AYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREV 290
YEAM NAGYLDSNMIVILNDSRHSLHPKIEE KTSINALSSTLS++QSSKSFR+LREV
Sbjct: 121 VYEAMGNAGYLDSNMIVILNDSRHSLHPKIEEGSKTSINALSSTLSKLQSSKSFRRLREV 180
Query: 291 AKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQE 350
AKG+TKRIG M+E AAKVDEYARGM+GP GSTLFEELGLYYIGPVDGHNIEDL+ VLQE
Sbjct: 181 AKGVTKRIG--MYELAAKVDEYARGMMGPLGSTLFEELGLYYIGPVDGHNIEDLVCVLQE 238
Query: 351 VASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEG---ASDSNSLPFGNYSRTYDDCF 407
V++L SMGPVL+HV+TEEN+ AE Q++EA+ QQEG S ++ +++TY DCF
Sbjct: 239 VSTLESMGPVLIHVITEENQCAEHKQQTEAMGNQQEGMFSVSAGYAVLSNMHTQTYSDCF 298
Query: 408 IEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGL 467
+EAL+MEAEKDKDIVVVHAG EM+ S QLFQE+FP R+F VGMAEQHAVTFSAGL+CGGL
Sbjct: 299 VEALIMEAEKDKDIVVVHAGKEMEPSFQLFQERFPHRFFYVGMAEQHAVTFSAGLSCGGL 358
Query: 468 KPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPN 527
KPFCIIPSAFLQRAYDQVV+DVDQQR+PVRFVITSAGLVG DGPT CGAFDITFMSCLPN
Sbjct: 359 KPFCIIPSAFLQRAYDQVVHDVDQQRIPVRFVITSAGLVGPDGPTMCGAFDITFMSCLPN 418
Query: 528 MIVMAPSDEDELVDMVATVASIDDRPVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEG 587
MIVMAPSDED+LVDMVAT A I+DRPVCFRYPRGAI TD GIP+EIGKG LVEG
Sbjct: 419 MIVMAPSDEDQLVDMVATAAHINDRPVCFRYPRGAIAGTDHYTRSGIPVEIGKGLTLVEG 478
Query: 588 KDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEE 647
KDVALLGYG MVQNCL+A+ LLSKLGI+VTVADARFCKPLD+KL+R+LC+NH FL+TVEE
Sbjct: 479 KDVALLGYGTMVQNCLRAQTLLSKLGIEVTVADARFCKPLDMKLLRQLCENHAFLVTVEE 538
Query: 648 GSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATAL 707
GSIGGFGSHVS FIALDG LD KWRPIVLPDNYIEHA P +QLALAGLTGHHIAAT L
Sbjct: 539 GSIGGFGSHVSQFIALDGQLDGRTKWRPIVLPDNYIEHALPNEQLALAGLTGHHIAATVL 598
Query: 708 SLLGRTREALLLMC 721
LLGR+REALLLMC
Sbjct: 599 RLLGRSREALLLMC 612
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15239030|ref|NP_196699.1| 1-deoxy-D-xylulose 5-phosphate synthase 3 [Arabidopsis thaliana] gi|8953400|emb|CAB96673.1| 1-D-deoxyxylulose 5-phosphate synthase-like protein [Arabidopsis thaliana] gi|332004286|gb|AED91669.1| 1-deoxy-D-xylulose 5-phosphate synthase 3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 998 bits (2579), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/717 (69%), Positives = 582/717 (81%), Gaps = 21/717 (2%)
Query: 5 SAKYPLELPLTAHCHGTLDQRKIEFLSSNISRELEISRINLCPSSSSITSSKLVTVSRIC 64
SA + ++A +G + + S++ +L++S +L + SS T + +R+C
Sbjct: 3 SASIGYQFGISARFYGNFNLSS-DITVSSLPCKLDVSIKSLFSAPSS-THKEYSNRARVC 60
Query: 65 ALPDIDDFFWDKEPTPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIV-SKTEKSLKS 123
+LP+ D + +K TPILD +E PL+LK+L++KELK LA EIR+EL S++ KT+KS+
Sbjct: 61 SLPNTDGYCDEKFETPILDSIETPLQLKNLSVKELKLLADEIRTELHSVLWKKTQKSMNP 120
Query: 124 SLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSE 183
S AA+ELT+ALH+VF APVD ILWD EQTYAHK+LT R S I + R+ GISG TSR E
Sbjct: 121 SFAAIELTLALHYVFRAPVDNILWDAVEQTYAHKVLTRRWSAIPS-RQNSGISGVTSRLE 179
Query: 184 SEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDS 243
SEYD F GHGCNS+SAGLG+AVARD+KGKR+ +V VI N T AGQAYEAMSNAGYLDS
Sbjct: 180 SEYDSFGTGHGCNSISAGLGLAVARDMKGKRDRVVAVIDNVTITAGQAYEAMSNAGYLDS 239
Query: 244 NMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMH 303
NMIVILNDSRHSLHP +EE K SI+ALSS +S+IQSSK FR+ RE+AK MTKRIG+GM+
Sbjct: 240 NMIVILNDSRHSLHPNMEEGSKASISALSSIMSKIQSSKVFRKFRELAKAMTKRIGKGMY 299
Query: 304 EWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVH 363
EWAAKVDEYARGM+GP GSTLFEELGLYYIGPVDGHNIEDL+ VL+EV+SL SMGPVLVH
Sbjct: 300 EWAAKVDEYARGMVGPTGSTLFEELGLYYIGPVDGHNIEDLVCVLREVSSLDSMGPVLVH 359
Query: 364 VVTEENRRAEDTQKSEAIEKQQEGASDSNSLPFGNYSRTYDDCFIEALVMEAEKDKDIVV 423
V+TE NR AE T K+ ++ + RTY DCF+EALVMEAEKD+DIVV
Sbjct: 360 VITEGNRDAE-TVKNIMVKDR----------------RTYSDCFVEALVMEAEKDRDIVV 402
Query: 424 VHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYD 483
VHAGMEMD SL FQE+FP+R+F+VGMAEQHAVTFSAGL+ GGLKPFCIIPSAFLQRAYD
Sbjct: 403 VHAGMEMDPSLLTFQERFPDRFFNVGMAEQHAVTFSAGLSSGGLKPFCIIPSAFLQRAYD 462
Query: 484 QVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMV 543
QVV+DVD+QR VRFVITSAGLVGSDGP QCGAFDI FMS LPNMI MAP+DEDELV+MV
Sbjct: 463 QVVHDVDRQRKAVRFVITSAGLVGSDGPVQCGAFDIAFMSSLPNMIAMAPADEDELVNMV 522
Query: 544 ATVASIDDRPVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCL 603
AT A + DRPVCFR+PRG+IV + G+PIEIG+G+VLVEG+DVALLGYGAMVQNCL
Sbjct: 523 ATAAYVTDRPVCFRFPRGSIVNMNYLVPTGLPIEIGRGRVLVEGQDVALLGYGAMVQNCL 582
Query: 604 KARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIAL 663
A +LLSKLG++VTVADARFCKPLDIKLVR+LCQNH FLITVEEG +GGFGSHV+ FIAL
Sbjct: 583 HAHSLLSKLGLNVTVADARFCKPLDIKLVRDLCQNHKFLITVEEGCVGGFGSHVAQFIAL 642
Query: 664 DGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTREALLLM 720
DG LD +KWRPIVLPD YIE ASP +QLALAGLTGHHIAATALSLLGRTREALLLM
Sbjct: 643 DGQLDGNIKWRPIVLPDGYIEEASPREQLALAGLTGHHIAATALSLLGRTREALLLM 699
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 721 | ||||||
| TAIR|locus:2130374 | 717 | CLA1 "CLOROPLASTOS ALTERADOS 1 | 0.904 | 0.909 | 0.606 | 1.3e-210 | |
| TAIR|locus:2089885 | 641 | DXPS1 "1-deoxy-D-xylulose 5-ph | 0.496 | 0.558 | 0.606 | 1.1e-176 | |
| TIGR_CMR|SPO_0247 | 642 | SPO_0247 "1-deoxy-D-xylulose-5 | 0.861 | 0.967 | 0.482 | 9.3e-146 | |
| TAIR|locus:2148047 | 700 | DXPS3 "1-deoxy-D-xylulose 5-ph | 0.603 | 0.621 | 0.641 | 4.4e-139 | |
| TIGR_CMR|DET_0745 | 647 | DET_0745 "1-deoxy-D-xylulose-5 | 0.855 | 0.953 | 0.411 | 5.4e-118 | |
| TIGR_CMR|GSU_0686 | 637 | GSU_0686 "deoxyxylulose-5-phos | 0.848 | 0.960 | 0.405 | 3.1e-115 | |
| TIGR_CMR|CHY_1985 | 622 | CHY_1985 "1-deoxy-D-xylulose-5 | 0.828 | 0.959 | 0.401 | 1e-114 | |
| TIGR_CMR|SO_1525 | 622 | SO_1525 "deoxyxylulose-5-phosp | 0.808 | 0.937 | 0.404 | 1.6e-111 | |
| UNIPROTKB|P77488 | 620 | dxs "Dxs" [Escherichia coli K- | 0.819 | 0.953 | 0.406 | 1.3e-109 | |
| TIGR_CMR|GSU_1764 | 626 | GSU_1764 "deoxyxylulose-5-phos | 0.851 | 0.980 | 0.410 | 2.6e-109 |
| TAIR|locus:2130374 CLA1 "CLOROPLASTOS ALTERADOS 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2036 (721.8 bits), Expect = 1.3e-210, P = 1.3e-210
Identities = 403/665 (60%), Positives = 502/665 (75%)
Query: 62 RICA-LPDIDDFFWDKEPTPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKS 120
++CA L + +++ ++ PTP+LD + P+ +K+L++KELKQL+ E+RS++ VSKT
Sbjct: 56 KVCASLAEKGEYYSNRPPTPLLDTINYPIHMKNLSVKELKQLSDELRSDVIFNVSKTGGH 115
Query: 121 LKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTS 180
L SSL VELTVALH++F+ P DKILWDVG Q+Y HKILTGRR + T+R+ +G+SG+T
Sbjct: 116 LGSSLGVVELTVALHYIFNTPQDKILWDVGHQSYPHKILTGRRGKMPTMRQTNGLSGFTK 175
Query: 181 RSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGY 240
R ESE+D F GH ++SAGLGMAV RD+KGK +V VI +G AGQAYEAM+NAGY
Sbjct: 176 RGESEHDCFGTGHSSTTISAGLGMAVGRDLKGKNNNVVAVIGDGAMTAGQAYEAMNNAGY 235
Query: 241 LDSNMIVILNDSRH-SLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIG 299
LDS+MIVILND++ SL + P + ALSS LSR+QS+ + R+LREVAKGMTK+IG
Sbjct: 236 LDSDMIVILNDNKQVSLPTATLDGPSPPVGALSSALSRLQSNPALRELREVAKGMTKQIG 295
Query: 300 RGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGP 359
MH+ AAKVDEYARGMI GS+LFEELGLYYIGPVDGHNI+DL+++L+EV S + GP
Sbjct: 296 GPMHQLAAKVDEYARGMISGTGSSLFEELGLYYIGPVDGHNIDDLVAILKEVKSTRTTGP 355
Query: 360 VLVHVVTEENR------RAEDTQKSEAIEKQQEGASDSNSLPFGNYSRTYDDCFIEALVM 413
VL+HVVTE+ R RA+D K + K N +++Y F EALV
Sbjct: 356 VLIHVVTEKGRGYPYAERADD--KYHGVVKFDPATG--RQFKTTNKTQSYTTYFAEALVA 411
Query: 414 EAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCII 473
EAE DKD+V +HA M L LFQ +FP R FDVG+AEQHAVTF+AGLAC GLKPFC I
Sbjct: 412 EAEVDKDVVAIHAAMGGGTGLNLFQRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAI 471
Query: 474 PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAP 533
S+F+QRAYDQVV+DVD Q+LPVRF + AGLVG+DGPT CGAFD+TFM+CLPNMIVMAP
Sbjct: 472 YSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMACLPNMIVMAP 531
Query: 534 SDEDELVDMVATVASIDDRPVCFRYPRGAIVRTDLP-GYRGIPIEIGKGKVLVEGKDVAL 592
SDE +L +MVAT +IDDRP CFRYPRG + LP G +G+PIEIGKG++L EG+ VAL
Sbjct: 532 SDEADLFNMVATAVAIDDRPSCFRYPRGNGIGVALPPGNKGVPIEIGKGRILKEGERVAL 591
Query: 593 LGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGG 652
LGYG+ VQ+CL A +L + G++VTVADARFCKPLD L+R L ++H LITVEEGSIGG
Sbjct: 592 LGYGSAVQSCLGAAVMLEERGLNVTVADARFCKPLDRALIRSLAKSHEVLITVEEGSIGG 651
Query: 653 FGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 712
FGSHV F+ALDGLLD +KWRP+VLPD YI+H +P QLA AGL HIAATAL+L+G
Sbjct: 652 FGSHVVQFLALDGLLDGKLKWRPMVLPDRYIDHGAPADQLAEAGLMPSHIAATALNLIGA 711
Query: 713 TREAL 717
REAL
Sbjct: 712 PREAL 716
|
|
| TAIR|locus:2089885 DXPS1 "1-deoxy-D-xylulose 5-phosphate synthase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1142 (407.1 bits), Expect = 1.1e-176, Sum P(2) = 1.1e-176
Identities = 219/361 (60%), Positives = 275/361 (76%)
Query: 315 GMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAED 374
GMI STLFEELG +Y+GPVDGHNI+DL+S+L+ + S ++GPVL+HVVTE+ R
Sbjct: 269 GMIRETSSTLFEELGFHYVGPVDGHNIDDLVSILETLKSTKTIGPVLIHVVTEKGRGYPY 328
Query: 375 TQKSEAIEKQQEGASDSNSLPFGNYSRT--YDDCFIEALVMEAEKDKDIVVVHAGMEMDL 432
++++ F N S+T Y CF+EAL+ EAE DKDIV +HA M
Sbjct: 329 AERADDKYHGVLKFDPETGKQFKNISKTQSYTSCFVEALIAEAEADKDIVAIHAAMGGGT 388
Query: 433 SLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQ 492
L LF+ +FP R FDVG+AEQHAVTF+AGLAC GLKPFC I S+F+QRAYDQVV+DVD Q
Sbjct: 389 MLNLFESRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCTIYSSFMQRAYDQVVHDVDLQ 448
Query: 493 RLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDR 552
+LPVRF I AGL+G+DGPT CGAFD+TFM+CLPNMIVMAPSDE EL +MVAT A+IDDR
Sbjct: 449 KLPVRFAIDRAGLMGADGPTHCGAFDVTFMACLPNMIVMAPSDEAELFNMVATAAAIDDR 508
Query: 553 PVCFRYPRGAIVRTDLP-GYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSK 611
P CFRY RG + LP G +G+P++IG+G++L +G+ VALLGYG+ VQ CL+A ++LS+
Sbjct: 509 PSCFRYHRGNGIGVSLPPGNKGVPLQIGRGRILRDGERVALLGYGSAVQRCLEAASMLSE 568
Query: 612 LGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGV 671
G+ +TVADARFCKPLD+ L+R L ++H LITVEEGSIGGFGSHV F+ALDGLLD +
Sbjct: 569 RGLKITVADARFCKPLDVALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGKL 628
Query: 672 K 672
K
Sbjct: 629 K 629
|
|
| TIGR_CMR|SPO_0247 SPO_0247 "1-deoxy-D-xylulose-5-phosphate synthase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 1424 (506.3 bits), Expect = 9.3e-146, P = 9.3e-146
Identities = 312/647 (48%), Positives = 410/647 (63%)
Query: 75 DKEPTPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVAL 134
D+ TP+LD V P LK + +L QLA E+R+E S VS T L + L VELTVAL
Sbjct: 3 DRPHTPLLDQVTRPADLKRFSDAQLTQLAGELRAETVSAVSVTGGHLGAGLGVVELTVAL 62
Query: 135 HHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHG 194
H VF P DK++WDVG Q Y HKILT RR I TLR KDG+SG+T RSES YDPF A H
Sbjct: 63 HAVFDTPRDKVIWDVGHQCYPHKILTERRDRIRTLRMKDGLSGFTKRSESPYDPFGAAHS 122
Query: 195 CNSVSAGLGMAVARDIKGKR-ECI---VTVISNGTTMAGQAYEAMSNAGYLDSNMIVILN 250
S+SA LG AVARD+ G E + + VI +G+ AG A+EAM+NAG+L +IVILN
Sbjct: 123 STSISAALGFAVARDLGGVTPEGLGDAIAVIGDGSMSAGMAFEAMNNAGHLKKRLIVILN 182
Query: 251 DSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVD 310
D+ S+ P P + ALS+ LSR+ + + F++L+ AKG + E A +
Sbjct: 183 DNEMSIAP-----P---VGALSNYLSRLYAEEPFQELKAAAKGAVSLLPEPFREGAKRAK 234
Query: 311 EYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENR 370
E +GM G TLFEELG YIGP+DGH++ L+ VL+ V + + GP+L+HV+T++ +
Sbjct: 235 EMLKGMA--VGGTLFEELGFSYIGPIDGHDMGQLLPVLRTVKARAT-GPILLHVLTKKGK 291
Query: 371 ------RAEDTQKSEAIEKQQEGASDSNSLPFGNYSRTYDDCFIEALVMEAEKDKDIVVV 424
RA D + A K + P + + +Y F +ALV +A +D IV V
Sbjct: 292 GYAPAERARD--RGHATAKFDVVTGEQKKAP--SNAPSYTAVFGKALVDQAARDDKIVAV 347
Query: 425 HAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQ 484
A M L LF E++P R FDVG+AEQH VTFSA LA GGLKPFC + S FLQR YDQ
Sbjct: 348 TAAMPDGTGLNLFAERYPSRCFDVGIAEQHGVTFSAALAAGGLKPFCAMYSTFLQRGYDQ 407
Query: 485 VVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVA 544
VV+DV QRLPVRF I AGLVG+DG T G+FDI +++ LP M+VMA +DE ELV MVA
Sbjct: 408 VVHDVAIQRLPVRFAIDRAGLVGADGATHAGSFDIAYLANLPGMVVMAAADEAELVHMVA 467
Query: 545 TVASIDDRPVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLK 604
T A+ DD P+ FRYPRG V ++P G +EIGKG+++ +G VALL +G + K
Sbjct: 468 TAAAHDDGPIAFRYPRGEGVGVEMPEL-GKVLEIGKGRMIQKGARVALLSFGTRLTEVQK 526
Query: 605 ARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALD 664
A L+ GI T+ADARF KPLD L+ L +H LIT+EEG++GGFGSHV+ +A +
Sbjct: 527 AAEALAARGITPTIADARFAKPLDRDLILNLAHDHEALITIEEGAVGGFGSHVAQLLADE 586
Query: 665 GLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 711
G+ D G+K+R +VLPD +I+ +SP A+AG+ I A L +LG
Sbjct: 587 GVFDHGLKFRSMVLPDIFIDQSSPADMYAVAGMNAPQIEAKVLDVLG 633
|
|
| TAIR|locus:2148047 DXPS3 "1-deoxy-D-xylulose 5-phosphate synthase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1361 (484.2 bits), Expect = 4.4e-139, P = 4.4e-139
Identities = 286/446 (64%), Positives = 334/446 (74%)
Query: 280 SSKSFRQLREV-AKGMTKRIGRGMHEWA-AKVDEYARGMIGPQGSTLFEELGLYYIGPVD 337
S S L + +K + ++ R E A A +GM + + +E +GP
Sbjct: 260 SKASISALSSIMSKIQSSKVFRKFRELAKAMTKRIGKGMY--EWAAKVDEYARGMVGPTG 317
Query: 338 GHNIEDLISVLQEVASL-GSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGASDSNSLP- 395
E+L L + + G LV V+ E + + D+ + EG D+ ++
Sbjct: 318 STLFEEL--GLYYIGPVDGHNIEDLVCVLREVS--SLDSMGPVLVHVITEGNRDAETVKN 373
Query: 396 -FGNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQH 454
RTY DCF+EALVMEAEKD+DIVVVHAGMEMD SL FQE+FP+R+F+VGMAEQH
Sbjct: 374 IMVKDRRTYSDCFVEALVMEAEKDRDIVVVHAGMEMDPSLLTFQERFPDRFFNVGMAEQH 433
Query: 455 AVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQC 514
AVTFSAGL+ GGLKPFCIIPSAFLQRAYDQVV+DVD+QR VRFVITSAGLVGSDGP QC
Sbjct: 434 AVTFSAGLSSGGLKPFCIIPSAFLQRAYDQVVHDVDRQRKAVRFVITSAGLVGSDGPVQC 493
Query: 515 GAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPRGAIVRTDLPGYRGI 574
GAFDI FMS LPNMI MAP+DEDELV+MVAT A + DRPVCFR+PRG+IV + G+
Sbjct: 494 GAFDIAFMSSLPNMIAMAPADEDELVNMVATAAYVTDRPVCFRFPRGSIVNMNYLVPTGL 553
Query: 575 PIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRE 634
PIEIG+G+VLVEG+DVALLGYGAMVQNCL A +LLSKLG++VTVADARFCKPLDIKLVR+
Sbjct: 554 PIEIGRGRVLVEGQDVALLGYGAMVQNCLHAHSLLSKLGLNVTVADARFCKPLDIKLVRD 613
Query: 635 LCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLAL 694
LCQNH FLITVEEG +GGFGSHV+ FIALDG LD +KWRPIVLPD YIE ASP +QLAL
Sbjct: 614 LCQNHKFLITVEEGCVGGFGSHVAQFIALDGQLDGNIKWRPIVLPDGYIEEASPREQLAL 673
Query: 695 AGLTGHHIAATALSLLGRTREALLLM 720
AGLTGHHIAATALSLLGRTREALLLM
Sbjct: 674 AGLTGHHIAATALSLLGRTREALLLM 699
|
|
| TIGR_CMR|DET_0745 DET_0745 "1-deoxy-D-xylulose-5-phosphate synthase" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 1162 (414.1 bits), Expect = 5.4e-118, P = 5.4e-118
Identities = 264/641 (41%), Positives = 382/641 (59%)
Query: 81 ILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFHA 140
+LD + +P LK LT+ EL++LAV+IR EL + V+ L SSL VELT+ALH VF +
Sbjct: 18 LLDTINSPSDLKKLTLDELRELAVQIREELVNRVTLNGGHLASSLGVVELTIALHRVFES 77
Query: 141 PVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSA 200
P DKI+WDVG Q+YAHK+LTGRR TLR+ G+SG+T R ES +DPF AGH S+SA
Sbjct: 78 PKDKIIWDVGHQSYAHKLLTGRREQFATLRQHGGLSGFTCRDESPHDPFGAGHASTSISA 137
Query: 201 GLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKI 260
GLGMAVARD+ + +++VI +G G ++EA++NAG+L + IVILND+ ++ P
Sbjct: 138 GLGMAVARDLAKEDYSVISVIGDGAISGGMSFEAINNAGHLHTKFIVILNDNGMAISP-- 195
Query: 261 EESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVD---EYARGMI 317
S ALS L+ ++ F + AK + G WA ++ + M+
Sbjct: 196 ------STGALSKFLNNVRFDPRFEFAKRGAKQTITNMPFGKSVWAFTKSIKRKFEKSML 249
Query: 318 GPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQK 377
P GS L+EELG Y+GPVDGHNI +L + L+ S PVL+H++T++ + +D +
Sbjct: 250 -P-GS-LWEELGFIYLGPVDGHNIRELEAALKCAKDFESQ-PVLIHMITKKGKGYDDAE- 304
Query: 378 SEAIEKQQEGASDSNSLPFGNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLF 437
++A+ K A S L G + +Y F + L + +V + A M L
Sbjct: 305 ADAV-KYHGIAPKSGGLKSG-HGLSYSQVFGQTLHKIMSDNPKVVAITAAMTDGCGLSEV 362
Query: 438 QEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVR 497
FP+R FDVG+ EQHAVTF+AG+A G P +I S FLQR++DQ+++DV Q+LPV
Sbjct: 363 AADFPDRVFDVGICEQHAVTFAAGMATQGYIPVVVIYSTFLQRSFDQIIHDVCLQKLPVV 422
Query: 498 FVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFR 557
F I G+VG DG T G FD++FMS +P+MIV APSDE++L ++ T + +P R
Sbjct: 423 FAIDRGGIVGDDGKTHQGIFDLSFMSLIPDMIVTAPSDENDLQHLLYTAVN-SGKPFALR 481
Query: 558 YPRGAIVRTDLPG-YRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDV 616
YPRG + G R IPI G+ +VL G ++A+ G V +A +L++ GI
Sbjct: 482 YPRGFGEGVETEGTLRNIPI--GENEVLASGSEIAIFATGKSVAFAKEAMEILAESGIKP 539
Query: 617 TVADARFCKPLDIKLVRELCQNHTFLITVEEGSI-GGFGSHVSHFIALDGLLDSGVKWRP 675
T+ + R+ PLD +L+ ++ NH +LITVEE + GG GS ++ +A GL+++ VK
Sbjct: 540 TLVNNRYISPLDTELILKIAGNHKYLITVEENVLSGGLGSRINTILAEAGLVNA-VKIAN 598
Query: 676 IVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTREA 716
I +PD ++EH + + A GL G IA LSL+ T EA
Sbjct: 599 IAVPDKFVEHGNQSLLRAKYGLDGKGIAQKVLSLMANTGEA 639
|
|
| TIGR_CMR|GSU_0686 GSU_0686 "deoxyxylulose-5-phosphate synthase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 1136 (405.0 bits), Expect = 3.1e-115, P = 3.1e-115
Identities = 259/638 (40%), Positives = 375/638 (58%)
Query: 81 ILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFHA 140
+LD + P LK + +L LA EIR+ L VS+T L S+L VEL++ALH+ F +
Sbjct: 4 LLDTITCPADLKKIPRDQLPALAEEIRAFLLETVSRTGGHLASNLGVVELSIALHYCFDS 63
Query: 141 PVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSA 200
P D+ +WDVG Q Y HKILTGRR HT R+ GISG+ RSES +D F+ GH S+SA
Sbjct: 64 PTDRFVWDVGHQAYTHKILTGRRDRFHTQRQYGGISGFPKRSESSHDAFDTGHSSTSISA 123
Query: 201 GLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKI 260
GLGMA+AR+++G +V VI +G+ G A+EA++ AG+L N+IV+LND+ S+ P
Sbjct: 124 GLGMAMARELRGGSNKVVAVIGDGSMTGGIAFEALNQAGHLKKNLIVVLNDNEMSISP-- 181
Query: 261 EESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRI---GRGMHEWAAKVDEYARGMI 317
++ A SS +SR + FR+L++ +G+ + I G+ + ++A + + +G +
Sbjct: 182 ------NVGAFSSFVSRKLTGSYFRELKKEVQGLLQNIPAIGKDILQFARRAENSLKGFL 235
Query: 318 GPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQK 377
P LFE LG YIGP+ GHN+ L+ V + L GPV+VHV+T + + +
Sbjct: 236 TP--GMLFEALGFDYIGPIQGHNLPQLLEVFENARGLD--GPVVVHVMTTKGKGYVPAET 291
Query: 378 SEAIEKQQEGASD-SNSLPFGNY--SRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL 434
+ + G D + G+ + +Y F + L A +++ IV + A M L
Sbjct: 292 NPSAF-HGVGPFDVATGKTTGSKPGAASYTGIFGDTLAQLARENEKIVAITAAMPDGTGL 350
Query: 435 QLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRL 494
F ++FPER+FDVG+AEQHAVTF+AGLA G +P I S FLQRAYDQV +DV Q L
Sbjct: 351 TGFAKEFPERFFDVGIAEQHAVTFAAGLAAEGFRPVTAIYSTFLQRAYDQVFHDVCLQNL 410
Query: 495 PVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPV 554
PV F + G+VG DGPT G FD++++ LP M +MAP DE+EL M+ T S D P+
Sbjct: 411 PVVFALDRGGVVGDDGPTHHGVFDLSYLRHLPGMTLMAPKDENELRHMLKTAVS-HDGPI 469
Query: 555 CFRYPRGAIVRTDLPG-YRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLG 613
RYPRGA L R IPI G G++L EG DVA++ G V L+A L++ G
Sbjct: 470 ALRYPRGAGCGIPLDQELREIPI--GTGEILAEGDDVAIIAIGITVLPALEAARTLAEKG 527
Query: 614 IDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSI-GGFGSHVSHFIALDGLLDSGVK 672
I TV +ARF KPLD +++ + + +IT EE ++ GGFGS V +A +G+ +GV+
Sbjct: 528 IRATVINARFVKPLDREMILQAARRTGCIITAEENALQGGFGSAVLELLADEGM--TGVR 585
Query: 673 WRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLL 710
+ + +PD ++E Q A G+ IAA + L
Sbjct: 586 VKRLGIPDRFVEQGPQPQLRADLGIDAAGIAAATEAFL 623
|
|
| TIGR_CMR|CHY_1985 CHY_1985 "1-deoxy-D-xylulose-5-phosphate synthase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 1131 (403.2 bits), Expect = 1.0e-114, P = 1.0e-114
Identities = 252/627 (40%), Positives = 368/627 (58%)
Query: 80 PILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFH 139
PIL+ + P +K L EL LA E+R + ++ S+ L SL VELT+ALH VF
Sbjct: 3 PILERISLPEDIKKLKPSELMALAQELREYIITVASQNGGHLAPSLGVVELTIALHFVFE 62
Query: 140 APVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVS 199
AP DKI+WDVG Q YAHKILTGR+ TLR G+SG+ R ES YD F GH S+S
Sbjct: 63 APKDKIIWDVGHQAYAHKILTGRKKQFKTLRTFGGLSGFPKRDESPYDAFGVGHSSTSIS 122
Query: 200 AGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPK 259
A LGMA+ARD+KG++ +V VI +G G A+EA+++AG+L +IV++ND+ S+
Sbjct: 123 AALGMALARDLKGEQYEVVAVIGDGALTGGMAFEALNHAGHLQKKLIVVVNDNEMSI--- 179
Query: 260 IEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRI---GRGMHEWAAKVDEYARGM 316
++ ALS+ LSRI++ + + ++ + + K+I G M + ++ + + +
Sbjct: 180 -----AQNVGALSAYLSRIRTDPKYSRGKDELEALIKKIPHIGPTMVKIGERLKDSFKYL 234
Query: 317 IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRR---AE 373
+ P LFEELG Y+GP+DGHNI+++I V + GPV+VHV+T++ + AE
Sbjct: 235 LVP--GMLFEELGFTYLGPIDGHNIKEMIEVFSRAKTFA--GPVVVHVITKKGKGYHWAE 290
Query: 374 DTQKS-EAIEKQQEGASDSNSLPFGNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDL 432
+ + K + P +++ + F +ALV A+ ++V + A M
Sbjct: 291 ENPDGFHGVGKFYISTGEPVEAPRVSFT----EVFGKALVELAQDRPEVVAITAAMPTGT 346
Query: 433 SLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQ 492
L F + +PER++DVG+AEQHAVT +AG+AC GLKP I S FLQR++DQ+++DV Q
Sbjct: 347 GLNYFAQNYPERFYDVGIAEQHAVTMAAGMACEGLKPVVAIYSTFLQRSFDQIIHDVCLQ 406
Query: 493 RLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDR 552
LPV F + AG+VG DGPT G FD++++ +PN+ +M P +ED L M+ T +
Sbjct: 407 NLPVVFAVDRAGIVGEDGPTHHGIFDLSYLRMIPNLTIMVPRNEDMLRKMLFTALN-HSG 465
Query: 553 PVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKL 612
PV RYPRGA V +L Y +PI G ++L EG D ++G G + LKA L
Sbjct: 466 PVALRYPRGAAVGVELTPYEQLPI--GTAEILKEGSDGVVIGVGRPLNYALKAAQKLENE 523
Query: 613 GIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSI-GGFGSHVSHFIALDGLLDSGV 671
GI +TV DARF KPLD KL+ E+ H +ITVEE + GGFGS V+ + + G+ G
Sbjct: 524 GISLTVIDARFVKPLDYKLLEEVGSLHKPVITVEENVVAGGFGSAVNEYFSFRGI---GT 580
Query: 672 KWRPIVLPDNYIEHASPTQQLALAGLT 698
K + + D + H + L L GLT
Sbjct: 581 KVVNLGIADEFPPHGKVEEILNLYGLT 607
|
|
| TIGR_CMR|SO_1525 SO_1525 "deoxyxylulose-5-phosphate synthase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 1101 (392.6 bits), Expect = 1.6e-111, P = 1.6e-111
Identities = 251/620 (40%), Positives = 364/620 (58%)
Query: 80 PILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFH 139
P+L P L+ L L QLA E+R L V + S L VELTVALH+V++
Sbjct: 9 PVLAQANTPNELRQLPQALLPQLADELREFLLKSVGMSSGHFASGLGTVELTVALHYVYN 68
Query: 140 APVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVS 199
P D+++WDVG Q Y HKILTGRR +HT+R+K+G+ + R ESEYD F+ GH S+S
Sbjct: 69 TPFDRLIWDVGHQAYPHKILTGRRDRMHTIRQKNGLHPFPWREESEYDTFSVGHSGTSIS 128
Query: 200 AGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPK 259
A L MAVA + + +V VI +G G +EAM++AG L ++M+++LND+ S
Sbjct: 129 AALAMAVAAEKEQAGRKVVAVIGDGAMTGGMVFEAMNHAGDLHNDMLMVLNDNEMS---- 184
Query: 260 IEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGP 319
I E+ + AL++ L+++ S + + +RE +K + K + + E A + +E+ +GM+ P
Sbjct: 185 ISEN----VGALNNHLAQLMSGRFYTTIRESSKKVLKGMPV-IKEMAKRTEEHLKGMVVP 239
Query: 320 QGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKS- 378
TLFEELG YIGP+DGH+++ L+ L+ + +L GP ++H++T++ R E +K
Sbjct: 240 --GTLFEELGFNYIGPIDGHDVDALVETLRNMRNL--KGPQVLHIMTKKGRGYEPAEKDP 295
Query: 379 ---EAIEKQQEGASDSNSLPFGNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQ 435
A+ K + G T+ F + L AE+D+ ++ + M +
Sbjct: 296 IGWHAVPKFDPSLFKKPATKPG--LPTFSQVFGKWLCDIAEQDEKVLGITPAMREGSGMV 353
Query: 436 LFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLP 495
F ++FP++YFD +AEQHAVT AG AC G KP I S FLQR YDQ+++DV QRLP
Sbjct: 354 EFSQRFPKQYFDAAIAEQHAVTLGAGFACEGYKPVVAIYSTFLQRGYDQLIHDVALQRLP 413
Query: 496 VRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVC 555
V F I G+VG+DGPT GAFD++FM C+PNM++MAPSDE+E M+ T D P
Sbjct: 414 VLFAIDRGGIVGADGPTHQGAFDLSFMRCIPNMVIMAPSDENECRQMLYTGYCYDAGPSA 473
Query: 556 FRYPRGAIV-RTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGI 614
RYPRG+ T + +PI GKG + GK +ALL +G + A AL + +
Sbjct: 474 VRYPRGSATGATQVEAMTALPI--GKGVIKRLGKRIALLNFGTTL-----AAALTAAESL 526
Query: 615 DVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSI-GGFGSHVSHFIALDGLLDSGVKW 673
D TV D RF KPLD+ LV+E+ Q H L+TVEE +I GG GS V L+ LL
Sbjct: 527 DATVVDMRFVKPLDVDLVKEMAQTHDVLVTVEENAIMGGAGSGV-----LE-LLQQLKMP 580
Query: 674 RPIV---LPDNYIEHASPTQ 690
+P++ LPD +I+H SP +
Sbjct: 581 KPVLQIGLPDEFIKHGSPDE 600
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| UNIPROTKB|P77488 dxs "Dxs" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 1083 (386.3 bits), Expect = 1.3e-109, P = 1.3e-109
Identities = 254/625 (40%), Positives = 360/625 (57%)
Query: 80 PILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFH 139
P L LV++ L+ L + L +L E+R L VS++ S L VELTVALH+V++
Sbjct: 9 PTLALVDSTQELRLLPKESLPKLCDELRRYLLDSVSRSSGHFASGLGTVELTVALHYVYN 68
Query: 140 APVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVS 199
P D+++WDVG Q Y HKILTGRR I T+R+K G+ + R ESEYD + GH S+S
Sbjct: 69 TPFDQLIWDVGHQAYPHKILTGRRDKIGTIRQKGGLHPFPWRGESEYDVLSVGHSSTSIS 128
Query: 200 AGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPK 259
AG+G+AVA + +GK V VI +G AG A+EAM++AG + +M+VILND+ S
Sbjct: 129 AGIGIAVAAEKEGKNRRTVCVIGDGAITAGMAFEAMNHAGDIRPDMLVILNDNEMS---- 184
Query: 260 IEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGP 319
I E+ + AL++ L+++ S K + LRE K + + + E + +E+ +GM+ P
Sbjct: 185 ISEN----VGALNNHLAQLLSGKLYSSLREGGKKVFSGVPP-IKELLKRTEEHIKGMVVP 239
Query: 320 QGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKS- 378
TLFEELG YIGPVDGH++ LI+ L+ + L GP +H++T++ R E +K
Sbjct: 240 --GTLFEELGFNYIGPVDGHDVLGLITTLKNMRDL--KGPQFLHIMTKKGRGYEPAEKDP 295
Query: 379 ---EAIEK--QQEGASDSNSLPFGNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLS 433
A+ K G +S +YS+ + D E A KD ++ + M
Sbjct: 296 ITFHAVPKFDPSSGCLPKSSGGLPSYSKIFGDWLCET----AAKDNKLMAITPAMREGSG 351
Query: 434 LQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQR 493
+ F KFP+RYFDV +AEQHAVTF+AGLA GG KP I S FLQRAYDQV++DV Q+
Sbjct: 352 MVEFSRKFPDRYFDVAIAEQHAVTFAAGLAIGGYKPIVAIYSTFLQRAYDQVLHDVAIQK 411
Query: 494 LPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRP 553
LPV F I AG+VG+DG T GAFD++++ C+P M++M PSDE+E M+ T +D P
Sbjct: 412 LPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYNDGP 471
Query: 554 VCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLG 613
RYPRG V +L +PI GKG V G+ +A+L +G ++ K L+
Sbjct: 472 SAVRYPRGNAVGVELTPLEKLPI--GKGIVKRRGEKLAILNFGTLMPEAAKVAESLN--- 526
Query: 614 IDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSI-GGFGSHVSHFIALDGLLDSGVK 672
T+ D RF KPLD L+ E+ +H L+TVEE +I GG GS V+ + V
Sbjct: 527 --ATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAGSGVNEVLMAHR---KPVP 581
Query: 673 WRPIVLPDNYIEHASPTQQLALAGL 697
I LPD +I + + A GL
Sbjct: 582 VLNIGLPDFFIPQGTQEEMRAELGL 606
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| TIGR_CMR|GSU_1764 GSU_1764 "deoxyxylulose-5-phosphate synthase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 1080 (385.2 bits), Expect = 2.6e-109, P = 2.6e-109
Identities = 263/641 (41%), Positives = 363/641 (56%)
Query: 81 ILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFHA 140
ILD V++P LK LT EL LA EIR E+ ++ S+ L SL VELT+ALH VF +
Sbjct: 4 ILDRVDSPSDLKGLTTAELGILAEEIRQEIITVCSRNGGHLAPSLGVVELTLALHRVFTS 63
Query: 141 PVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSA 200
P DKI+WDVG Q YAHK++TGRR TLR GISG+ R+ES +D F+AGH S+SA
Sbjct: 64 PEDKIVWDVGHQAYAHKLVTGRRDRFATLRTLGGISGFLKRAESPHDVFDAGHASTSISA 123
Query: 201 GLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKI 260
LG+A ARD+ G+ +V VI +G+ G AYE +++AG+L+ +++V+LND+ S I
Sbjct: 124 ALGLAAARDLAGRNNKVVAVIGDGSMTGGIAYEGLNHAGHLNRDLVVVLNDNEMS----I 179
Query: 261 EESPKTSINALSSTLSRIQSSKSFRQLR---EVAKGMTKRIGRGMHEWAAKVDEYARGMI 317
E+ + ALS+ LSR +S+ L+ E G RIGR + + A + +E +G+
Sbjct: 180 AEN----VGALSNFLSRTVTSEFVHTLKKDVETFLGGLDRIGRNVLKVAKRAEESLKGLF 235
Query: 318 GPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQK 377
P LFE G YIGP+DGH+I L ++V VL+HV+T++ + +
Sbjct: 236 TP--GMLFEAFGFEYIGPIDGHDIGRLTETFEKVKRFDDA--VLIHVLTKKGKGFAPAEA 291
Query: 378 SEAIEKQQEGASD--SNSLPFGNYSRT-YDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL 434
++ G D S + G T Y F +AL A++D+ +V + A M L
Sbjct: 292 KPSLF-HGVGPFDPVSGEIVKGKGGATSYTGVFGQALTRIADEDERVVAITAAMPDGTGL 350
Query: 435 QLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRL 494
F + P R+FDVG+AEQH VTF+AGLA G +P I S+FLQRAYDQ+ +DV L
Sbjct: 351 GSFSARHPGRFFDVGIAEQHGVTFAAGLAAEGYRPVFAIYSSFLQRAYDQLFHDVCLMNL 410
Query: 495 PVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDR-P 553
PV F I +G+VGSDGPT G FD++++ LPNM+VMAP DE+EL M+ T +ID P
Sbjct: 411 PVTFAIDRSGVVGSDGPTHHGLFDLSYLRTLPNMVVMAPKDENELQHMLKT--AIDHNGP 468
Query: 554 VCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVAL-LGYGAMVQNCLKARALLSKL 612
RYPRG + L PI +G +VL G + L GAMV L+A L
Sbjct: 469 AAVRYPRGNGLGVPLDQSLA-PIPLGTSEVLRAGSGTCVVLAVGAMVGPALEAANTLEGE 527
Query: 613 GIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSI-GGFGSHVSHFIALDGLLDSGV 671
GID+TV + RF KPLD +L+ L+T+EE + GGFGS V +A +G+ GV
Sbjct: 528 GIDLTVVNVRFVKPLDRELILSYVGRAGTLVTIEENVLQGGFGSAVLELLADEGV--GGV 585
Query: 672 KWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 712
PD Y+E + + GL IA +L R
Sbjct: 586 AVHRFGYPDRYVEQGEQHELRSRYGLDAEGIAGRIRTLSAR 626
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| A9IQP2 | DXS_BART1 | 2, ., 2, ., 1, ., 7 | 0.4837 | 0.8515 | 0.9669 | yes | no |
| A5V6A9 | DXS_SPHWW | 2, ., 2, ., 1, ., 7 | 0.4791 | 0.8696 | 0.9812 | yes | no |
| A5VP09 | DXS_BRUO2 | 2, ., 2, ., 1, ., 7 | 0.4984 | 0.8571 | 0.9611 | yes | no |
| Q6G0D4 | DXS_BARQU | 2, ., 2, ., 1, ., 7 | 0.4929 | 0.8571 | 0.9656 | yes | no |
| B0CKC0 | DXS_BRUSI | 2, ., 2, ., 1, ., 7 | 0.4984 | 0.8571 | 0.9611 | yes | no |
| Q57ET1 | DXS_BRUAB | 2, ., 2, ., 1, ., 7 | 0.4968 | 0.8571 | 0.9611 | yes | no |
| Q8UHD7 | DXS_AGRT5 | 2, ., 2, ., 1, ., 7 | 0.4663 | 0.8585 | 0.9687 | yes | no |
| A9M8W0 | DXS_BRUC2 | 2, ., 2, ., 1, ., 7 | 0.4984 | 0.8571 | 0.9611 | yes | no |
| Q11KE0 | DXS_MESSB | 2, ., 2, ., 1, ., 7 | 0.4821 | 0.8613 | 0.9553 | yes | no |
| Q5FUB1 | DXS_GLUOX | 2, ., 2, ., 1, ., 7 | 0.4662 | 0.8571 | 0.9363 | yes | no |
| A7IPK6 | DXS_XANP2 | 2, ., 2, ., 1, ., 7 | 0.4846 | 0.8668 | 0.9720 | yes | no |
| Q2RYD6 | DXS1_RHORT | 2, ., 2, ., 1, ., 7 | 0.4772 | 0.8585 | 0.9596 | yes | no |
| Q8G292 | DXS_BRUSU | 2, ., 2, ., 1, ., 7 | 0.4984 | 0.8571 | 0.9611 | yes | no |
| A1URW6 | DXS_BARBK | 2, ., 2, ., 1, ., 7 | 0.4815 | 0.8599 | 0.9717 | yes | no |
| B2IDK3 | DXS_BEII9 | 2, ., 2, ., 1, ., 7 | 0.4805 | 0.8668 | 0.9735 | yes | no |
| Q21A74 | DXS_RHOPB | 2, ., 2, ., 1, ., 7 | 0.4843 | 0.8613 | 0.9687 | yes | no |
| Q28WA7 | DXS1_JANSC | 2, ., 2, ., 1, ., 7 | 0.4617 | 0.8668 | 0.9780 | yes | no |
| Q1QQ40 | DXS_NITHX | 2, ., 2, ., 1, ., 7 | 0.4656 | 0.8765 | 0.9461 | yes | no |
| Q92RJ1 | DXS_RHIME | 2, ., 2, ., 1, ., 7 | 0.4632 | 0.8585 | 0.9596 | yes | no |
| A8IBS1 | DXS_AZOC5 | 2, ., 2, ., 1, ., 7 | 0.4803 | 0.8557 | 0.9625 | yes | no |
| Q1MKN4 | DXS_RHIL3 | 2, ., 2, ., 1, ., 7 | 0.475 | 0.8571 | 0.9686 | yes | no |
| A5EEQ0 | DXS_BRASB | 2, ., 2, ., 1, ., 7 | 0.4681 | 0.8654 | 0.9734 | yes | no |
| Q5NN52 | DXS1_ZYMMO | 2, ., 2, ., 1, ., 7 | 0.4697 | 0.8696 | 0.9661 | yes | no |
| B2S9T6 | DXS_BRUA1 | 2, ., 2, ., 1, ., 7 | 0.4968 | 0.8571 | 0.9611 | yes | no |
| Q2IRL7 | DXS_RHOP2 | 2, ., 2, ., 1, ., 7 | 0.4781 | 0.8668 | 0.9796 | yes | no |
| Q2RR29 | DXS2_RHORT | 2, ., 2, ., 1, ., 7 | 0.4772 | 0.8585 | 0.9596 | yes | no |
| Q0ARE5 | DXS_MARMM | 2, ., 2, ., 1, ., 7 | 0.4734 | 0.8543 | 0.9580 | yes | no |
| Q07SR3 | DXS_RHOP5 | 2, ., 2, ., 1, ., 7 | 0.4752 | 0.8557 | 0.9640 | yes | no |
| Q16CP0 | DXS2_ROSDO | 2, ., 2, ., 1, ., 7 | 0.4685 | 0.8557 | 0.9610 | yes | no |
| Q985Y3 | DXS_RHILO | 2, ., 2, ., 1, ., 7 | 0.5038 | 0.8640 | 0.9780 | yes | no |
| A4YQ36 | DXS_BRASO | 2, ., 2, ., 1, ., 7 | 0.4727 | 0.8654 | 0.9734 | yes | no |
| Q3J1A8 | DXS1_RHOS4 | 2, ., 2, ., 1, ., 7 | 0.4597 | 0.8543 | 0.9506 | yes | no |
| Q2YMF0 | DXS_BRUA2 | 2, ., 2, ., 1, ., 7 | 0.4968 | 0.8571 | 0.9611 | yes | no |
| Q2W367 | DXS_MAGSA | 2, ., 2, ., 1, ., 7 | 0.4837 | 0.8668 | 0.9704 | yes | no |
| Q8YFM2 | DXS_BRUME | 2, ., 2, ., 1, ., 7 | 0.4984 | 0.8571 | 0.9611 | yes | no |
| Q5LX42 | DXS_RUEPO | 2, ., 2, ., 1, ., 7 | 0.4785 | 0.8599 | 0.9657 | yes | no |
| B3QFY7 | DXS_RHOPT | 2, ., 2, ., 1, ., 7 | 0.4858 | 0.8613 | 0.9687 | yes | no |
| B6IRB5 | DXS_RHOCS | 2, ., 2, ., 1, ., 7 | 0.4976 | 0.8571 | 0.9626 | yes | no |
| Q6NB76 | DXS_RHOPA | 2, ., 2, ., 1, ., 7 | 0.4858 | 0.8613 | 0.9687 | yes | no |
| Q3SUZ1 | DXS_NITWN | 2, ., 2, ., 1, ., 7 | 0.4657 | 0.8807 | 0.9534 | yes | no |
| Q130G7 | DXS_RHOPS | 2, ., 2, ., 1, ., 7 | 0.4844 | 0.8668 | 0.9796 | yes | no |
| C0RHE3 | DXS_BRUMB | 2, ., 2, ., 1, ., 7 | 0.4984 | 0.8571 | 0.9611 | yes | no |
| Q6G4D1 | DXS_BARHE | 2, ., 2, ., 1, ., 7 | 0.4852 | 0.8515 | 0.9593 | yes | no |
| A6WWC4 | DXS_OCHA4 | 2, ., 2, ., 1, ., 7 | 0.4984 | 0.8571 | 0.9686 | yes | no |
| Q89RW1 | DXS_BRAJA | 2, ., 2, ., 1, ., 7 | 0.4812 | 0.8599 | 0.9379 | yes | no |
| O78328 | DXS_CAPAN | 2, ., 2, ., 1, ., 7 | 0.6104 | 0.8987 | 0.9012 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.2.1 | 0.921 |
| 4th Layer | 2.2.1.7 | 0.914 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.VI.2744.1 | hypothetical protein (657 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | estExt_Genewise1_v1.C_LG_XV1514 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase (EC-1.1.1.267) (471 aa) | • | • | • | 0.972 | |||||
 | DXR | SubName- Full=Putative chloroplast 1-deoxy-D-xylulose 5-phosphate reductoisomerase; EC=1.1.1.26 [...] (471 aa) | • | • | • | 0.972 | |||||
 | CMS | SubName- Full=Putative chloroplast 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; EC [...] (230 aa) | • | • | 0.725 | ||||||
 | gw1.I.8813.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC-4.6.1.12) (187 aa) | • | • | 0.632 | ||||||
 | MCS | SubName- Full=Putative chloroplast 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; EC=4. [...] (195 aa) | • | • | 0.622 | ||||||
 | eugene3.00141227 | hypothetical protein (256 aa) | • | 0.521 | |||||||
 | gw1.I.9714.1 | hypothetical protein (334 aa) | • | • | 0.520 | ||||||
 | CMK | SubName- Full=Putative chloroplast 4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; EC [...] (336 aa) | • | • | 0.516 | ||||||
 | eugene3.191750001 | Predicted protein (208 aa) | • | • | • | 0.512 | |||||
 | eugene3.51240001 | annotation not avaliable (258 aa) | • | 0.484 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 721 | |||
| PLN02225 | 701 | PLN02225, PLN02225, 1-deoxy-D-xylulose-5-phosphate | 0.0 | |
| PLN02582 | 677 | PLN02582, PLN02582, 1-deoxy-D-xylulose-5-phosphate | 0.0 | |
| PRK05444 | 580 | PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate | 0.0 | |
| COG1154 | 627 | COG1154, Dxs, Deoxyxylulose-5-phosphate synthase [ | 0.0 | |
| PLN02234 | 641 | PLN02234, PLN02234, 1-deoxy-D-xylulose-5-phosphate | 0.0 | |
| PRK12571 | 641 | PRK12571, PRK12571, 1-deoxy-D-xylulose-5-phosphate | 0.0 | |
| TIGR00204 | 617 | TIGR00204, dxs, 1-deoxy-D-xylulose-5-phosphate syn | 0.0 | |
| pfam13292 | 272 | pfam13292, DXP_synthase_N, 1-deoxy-D-xylulose-5-ph | 1e-124 | |
| PRK12315 | 581 | PRK12315, PRK12315, 1-deoxy-D-xylulose-5-phosphate | 1e-117 | |
| cd02007 | 195 | cd02007, TPP_DXS, Thiamine pyrophosphate (TPP) fam | 2e-74 | |
| COG3958 | 312 | COG3958, COG3958, Transketolase, C-terminal subuni | 5e-62 | |
| cd07033 | 156 | cd07033, TPP_PYR_DXS_TK_like, Pyrimidine (PYR) bin | 1e-59 | |
| pfam02779 | 172 | pfam02779, Transket_pyr, Transketolase, pyrimidine | 4e-38 | |
| smart00861 | 136 | smart00861, Transket_pyr, Transketolase, pyrimidin | 2e-37 | |
| pfam02780 | 124 | pfam02780, Transketolase_C, Transketolase, C-termi | 5e-35 | |
| PTZ00182 | 355 | PTZ00182, PTZ00182, 3-methyl-2-oxobutanate dehydro | 2e-27 | |
| PRK05899 | 586 | PRK05899, PRK05899, transketolase; Reviewed | 6e-26 | |
| COG0022 | 324 | COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogena | 6e-20 | |
| cd02007 | 195 | cd02007, TPP_DXS, Thiamine pyrophosphate (TPP) fam | 5e-18 | |
| PRK09212 | 327 | PRK09212, PRK09212, pyruvate dehydrogenase subunit | 5e-17 | |
| cd06586 | 154 | cd06586, TPP_enzyme_PYR, Pyrimidine (PYR) binding | 1e-16 | |
| PLN02683 | 356 | PLN02683, PLN02683, pyruvate dehydrogenase E1 comp | 2e-13 | |
| COG0021 | 663 | COG0021, TktA, Transketolase [Carbohydrate transpo | 1e-12 | |
| PRK11892 | 464 | PRK11892, PRK11892, pyruvate dehydrogenase subunit | 4e-11 | |
| cd07036 | 167 | cd07036, TPP_PYR_E1-PDHc-beta_like, Pyrimidine (PY | 6e-08 | |
| PTZ00089 | 661 | PTZ00089, PTZ00089, transketolase; Provisional | 8e-06 | |
| PLN02790 | 654 | PLN02790, PLN02790, transketolase | 1e-05 | |
| CHL00144 | 327 | CHL00144, odpB, pyruvate dehydrogenase E1 componen | 3e-05 | |
| TIGR00232 | 653 | TIGR00232, tktlase_bact, transketolase, bacterial | 0.002 |
| >gnl|CDD|177870 PLN02225, PLN02225, 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
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Score = 989 bits (2557), Expect = 0.0
Identities = 493/685 (71%), Positives = 568/685 (82%), Gaps = 21/685 (3%)
Query: 37 ELEISRINLCPSSSSITSSKLVTVSRICALPDIDDFFWDKEPTPILDLVENPLRLKSLTI 96
++ I + PSS+ S V C+LP+ D++ +K TPILD +E PL+LK+L++
Sbjct: 36 DVSIKSLFSAPSSTHKECSNRARVC--CSLPNTDEYCDEKFETPILDSIETPLQLKNLSV 93
Query: 97 KELKQLAVEIRSELSSIV-SKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYA 155
KELK LA EIR+EL S++ KT+KS+ S AA+ELT+ALH+VF APVD ILWD EQTYA
Sbjct: 94 KELKLLADEIRTELHSVLWKKTQKSMNPSFAAIELTLALHYVFRAPVDNILWDAVEQTYA 153
Query: 156 HKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRE 215
HK+LT R S I + R+K+GISG TS+ ESEYD F GHGCNS+SAGLG+AVARDIKGKR+
Sbjct: 154 HKVLTRRWSAIPS-RQKNGISGVTSQLESEYDSFGTGHGCNSISAGLGLAVARDIKGKRD 212
Query: 216 CIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTL 275
+V VI N T AGQAYEAMSNAGYLDSNMIVILNDSRHSLHP +EE K SI+ALSS +
Sbjct: 213 RVVAVIDNATITAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPNMEEGSKASISALSSIM 272
Query: 276 SRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGP 335
S+IQSSK FR+ RE+AK MTKRIG+GM+EWAAKVDEYARGM+GP GSTLFEELGLYYIGP
Sbjct: 273 SKIQSSKIFRKFRELAKAMTKRIGKGMYEWAAKVDEYARGMVGPTGSTLFEELGLYYIGP 332
Query: 336 VDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGASDSNSLP 395
VDGHNIEDL+ VL+EV+SL SMGPVLVHV+TEENR AE T K+ ++ +
Sbjct: 333 VDGHNIEDLVCVLREVSSLDSMGPVLVHVITEENRDAE-TGKNIMVKDR----------- 380
Query: 396 FGNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHA 455
RTY DCF+EALVMEAEKD+DIVVVHAGMEMD SL FQE+FP+R+F+VGMAEQHA
Sbjct: 381 -----RTYSDCFVEALVMEAEKDRDIVVVHAGMEMDASLITFQERFPDRFFNVGMAEQHA 435
Query: 456 VTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCG 515
VTFSAGL+ GGLKPFCIIPSAFLQRAYDQVV+DVD+QR VRFVITSAGLVGSDGP QCG
Sbjct: 436 VTFSAGLSSGGLKPFCIIPSAFLQRAYDQVVHDVDRQRKAVRFVITSAGLVGSDGPVQCG 495
Query: 516 AFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPRGAIVRTDLPGYRGIP 575
AFDI FMS LPNMI MAP+DEDELV+MVAT A + DRPVCFR+PRG+IV + G+P
Sbjct: 496 AFDIAFMSSLPNMIAMAPADEDELVNMVATAAYVTDRPVCFRFPRGSIVNMNYLVPTGLP 555
Query: 576 IEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVREL 635
IEIG+G+VLVEG+DVALLGYGAMVQNCL A +LLSKLG++VTVADARFCKPLDIKLVR+L
Sbjct: 556 IEIGRGRVLVEGQDVALLGYGAMVQNCLHAHSLLSKLGLNVTVADARFCKPLDIKLVRDL 615
Query: 636 CQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALA 695
CQNH FLITVEEG +GGFGSHV+ FIALDG LD +KWRPIVLPD YIE ASP +QLALA
Sbjct: 616 CQNHKFLITVEEGCVGGFGSHVAQFIALDGQLDGNIKWRPIVLPDGYIEEASPREQLALA 675
Query: 696 GLTGHHIAATALSLLGRTREALLLM 720
GLTGHHIAATALSLLGRTREALLLM
Sbjct: 676 GLTGHHIAATALSLLGRTREALLLM 700
|
Length = 701 |
| >gnl|CDD|178194 PLN02582, PLN02582, 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Score = 918 bits (2373), Expect = 0.0
Identities = 408/671 (60%), Positives = 503/671 (74%), Gaps = 15/671 (2%)
Query: 61 SRICA---LPDIDDFFWDKEPTPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKT 117
S +CA + ++ + PTP+LD + P+ +K+L++KELKQLA E+RS++ VSKT
Sbjct: 10 SGVCASLSPEESAEYPSQRPPTPLLDTINYPIHMKNLSVKELKQLADELRSDVIFNVSKT 69
Query: 118 EKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISG 177
L SSL VELTVALH+VF+AP DKILWDVG Q+Y HKILTGRR +HT+R+ +G+SG
Sbjct: 70 GGHLGSSLGVVELTVALHYVFNAPQDKILWDVGHQSYPHKILTGRRDKMHTMRQTNGLSG 129
Query: 178 YTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSN 237
+T R+ESEYD F GH ++SAGLGMAV RD+KGK+ +V VI +G AGQAYEAM+N
Sbjct: 130 FTKRAESEYDCFGTGHSSTTISAGLGMAVGRDLKGKKNNVVAVIGDGAMTAGQAYEAMNN 189
Query: 238 AGYLDSNMIVILNDSRH-SLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTK 296
AGYLDS+MIVILND++ SL + P + ALSS LSR+QSS+ R+LREVAKG+TK
Sbjct: 190 AGYLDSDMIVILNDNKQVSLPTATLDGPAPPVGALSSALSRLQSSRPLRELREVAKGVTK 249
Query: 297 RIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGS 356
+IG MHE AAKVDEYARGMI GSTLFEELGLYYIGPVDGHNI+DL+++L+EV S +
Sbjct: 250 QIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLVTILREVKSTKT 309
Query: 357 MGPVLVHVVTEENR------RAEDTQKSEAIEKQQEGASDSNSLPFGNYSRTYDDCFIEA 410
GPVL+HVVTE+ R RA D K + K + +++Y F EA
Sbjct: 310 TGPVLIHVVTEKGRGYPYAERAAD--KYHGVVKFDPATGKQFKVK--AKTQSYTTYFAEA 365
Query: 411 LVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPF 470
L+ EAE DKD+V +HA M L LF +FP R FDVG+AEQHAVTF+AGLAC GLKPF
Sbjct: 366 LIAEAEVDKDVVAIHAAMGGGTGLNLFARRFPTRCFDVGIAEQHAVTFAAGLACEGLKPF 425
Query: 471 CIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIV 530
C I S+FLQR YDQVV+DVD Q+LPVRF + AGLVG+DGPT CGAFD+T+M+CLPNM+V
Sbjct: 426 CAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTYMACLPNMVV 485
Query: 531 MAPSDEDELVDMVATVASIDDRPVCFRYPRGAIVRTDLP-GYRGIPIEIGKGKVLVEGKD 589
MAPSDE EL MVAT A+IDDRP CFRYPRG + LP +GIPIE+GKG++L+EG+
Sbjct: 486 MAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVQLPPNNKGIPIEVGKGRILLEGER 545
Query: 590 VALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS 649
VALLGYG VQ+CL A +LL + G+ TVADARFCKPLD L+R L ++H LITVEEGS
Sbjct: 546 VALLGYGTAVQSCLAAASLLERHGLSATVADARFCKPLDRALIRSLAKSHEVLITVEEGS 605
Query: 650 IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSL 709
IGGFGSHV+ F+ALDGLLD +KWRP+VLPD YI+H +P QLA AGLT HIAAT L++
Sbjct: 606 IGGFGSHVAQFMALDGLLDGKLKWRPLVLPDRYIDHGAPADQLAEAGLTPSHIAATVLNV 665
Query: 710 LGRTREALLLM 720
LG+TREAL +M
Sbjct: 666 LGQTREALQIM 676
|
Length = 677 |
| >gnl|CDD|235470 PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Score = 715 bits (1848), Expect = 0.0
Identities = 300/644 (46%), Positives = 382/644 (59%), Gaps = 79/644 (12%)
Query: 79 TPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVF 138
P+LD + +P LK L+ +EL QLA EIR L +VSKT L S+L VELTVALH+VF
Sbjct: 4 YPLLDTINSPADLKKLSEEELPQLADEIREFLIDVVSKTGGHLGSNLGVVELTVALHYVF 63
Query: 139 HAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSV 198
P D+I+WDVG Q Y HKILTGRR TLR+K G+SG+ RSESEYD F AGH S+
Sbjct: 64 DTPKDRIIWDVGHQAYPHKILTGRRDRFDTLRQKGGLSGFPKRSESEYDTFGAGHSSTSI 123
Query: 199 SAGLGMAVARDIKGKREC-IVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLH 257
SA LGMA ARD+KG + +V VI +G G A+EA++NAG L S++IVILND+ S+
Sbjct: 124 SAALGMAKARDLKGGEDRKVVAVIGDGALTGGMAFEALNNAGDLKSDLIVILNDNEMSI- 182
Query: 258 PKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMI 317
SP ++ ALS+ L+R++SS
Sbjct: 183 -----SP--NVGALSNYLARLRSS------------------------------------ 199
Query: 318 GPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENR---RAED 374
TLFEELG YIGP+DGH+++ LI L+ L GPVL+HVVT++ + AE
Sbjct: 200 -----TLFEELGFNYIGPIDGHDLDALIETLKNAKDLK--GPVLLHVVTKKGKGYAPAEA 252
Query: 375 TQ-------KSEAIEKQQEGASDSNSLPFGNYSRTYDDCFIEALVMEAEKDKDIVVVHAG 427
K + +Q +S +Y F E L AEKD IV + A
Sbjct: 253 DPIKYHGVGKFDPETGEQPKSSKPGKP-------SYTKVFGETLCELAEKDPKIVAITAA 305
Query: 428 MEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVN 487
M L F ++FP+RYFDVG+AEQHAVTF+AGLA GLKP I S FLQRAYDQV++
Sbjct: 306 MPEGTGLVKFSKRFPDRYFDVGIAEQHAVTFAAGLATEGLKPVVAIYSTFLQRAYDQVIH 365
Query: 488 DVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVA 547
DV Q LPV F I AGLVG+DGPT GAFD++++ C+PNM++MAPSDE+EL M+ T
Sbjct: 366 DVALQNLPVTFAIDRAGLVGADGPTHQGAFDLSYLRCIPNMVIMAPSDENELRQMLYTAL 425
Query: 548 SIDDRPVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARA 607
+ DD P+ RYPRG V +LP P+ IGKG+VL EG+DVA+L +G M+ LKA
Sbjct: 426 AYDDGPIAIRYPRGNGVGVELPELE--PLPIGKGEVLREGEDVAILAFGTMLAEALKAAE 483
Query: 608 LLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSI-GGFGSHVSHFIALDGL 666
L+ TV DARF KPLD +L+ EL H ++TVEEG+I GGFGS V F+A GL
Sbjct: 484 RLA----SATVVDARFVKPLDEELLLELAAKHDLVVTVEEGAIMGGFGSAVLEFLADHGL 539
Query: 667 LDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLL 710
V + LPD +I+H S + LA GL IA L LL
Sbjct: 540 D---VPVLNLGLPDEFIDHGSREELLAELGLDAEGIARRILELL 580
|
Length = 580 |
| >gnl|CDD|224076 COG1154, Dxs, Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism] | Back alignment and domain information |
|---|
Score = 713 bits (1844), Expect = 0.0
Identities = 297/644 (46%), Positives = 399/644 (61%), Gaps = 23/644 (3%)
Query: 78 PTPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHV 137
P+LD + +P LK L+I+EL QLA EIR L +VS T L S+L VELT+ALH+V
Sbjct: 1 SYPLLDKINSPADLKKLSIEELPQLADEIREFLLEVVSATGGHLGSNLGVVELTIALHYV 60
Query: 138 FHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNS 197
F +P DK++WDVG Q Y HKILTGRR TLR+KDG+SG+ R ESE+D F GH S
Sbjct: 61 FDSPKDKLIWDVGHQAYPHKILTGRREQFDTLRQKDGLSGFPKREESEHDWFGVGHSSTS 120
Query: 198 VSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAG-YLDSNMIVILNDSRHSL 256
+SA LGMA ARD+KG+ +V VI +G G A+EA++NAG L SN+IVILND+ S+
Sbjct: 121 ISAALGMAKARDLKGEDRNVVAVIGDGALTGGMAFEALNNAGADLKSNLIVILNDNEMSI 180
Query: 257 HPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM 316
P ++ ALS L+R++S ++ LRE K + ++G + +A + +E +G+
Sbjct: 181 SP--------NVGALSKHLARLRSGPFYQSLREGGKKVLSKVGPPLKRFAKRAEESIKGL 232
Query: 317 IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENR---RAE 373
+ P TLFEELG YIGP+DGHN+E+LI L+ L GPVL+HVVT++ + AE
Sbjct: 233 LVPG--TLFEELGFNYIGPIDGHNLEELIPTLKNAKDLK--GPVLLHVVTKKGKGYKPAE 288
Query: 374 -DTQKSEAIEKQQEGASDSNSLPFGNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDL 432
D K + + S + +Y F + L A KD+ IV + A M
Sbjct: 289 EDPIKYHGVGPFDPIET-GQSKKSKPSAPSYTKVFGDTLCELAAKDEKIVAITAAMPEGT 347
Query: 433 SLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQ 492
L F +KFP+R+FDVG+AEQHAVTF+AGLA G+KP I S FLQRAYDQ+++DV Q
Sbjct: 348 GLVKFSKKFPDRFFDVGIAEQHAVTFAAGLAAEGMKPVVAIYSTFLQRAYDQLIHDVAIQ 407
Query: 493 RLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDR 552
LPV F I AG+VG+DGPT G FD++F+ C+PNM++MAP DE+EL M+ T + DD
Sbjct: 408 NLPVTFAIDRAGIVGADGPTHQGLFDLSFLRCIPNMVIMAPRDEEELRQMLYTALAQDDG 467
Query: 553 PVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKL 612
PV RYPRG V + P+EIGKG++L EG+ VA+L +G M+ LK L+
Sbjct: 468 PVAIRYPRGNGV-GVILTPELEPLEIGKGELLKEGEKVAILAFGTMLPEALKVAEKLNAY 526
Query: 613 GIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSI-GGFGSHVSHFIALDGLLDSGV 671
GI VTV D RF KPLD L+ EL ++H ++T+EE + GGFGS V F+A G+L V
Sbjct: 527 GISVTVVDPRFVKPLDEALLLELAKSHDLVVTLEENVVDGGFGSAVLEFLAAHGIL---V 583
Query: 672 KWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTRE 715
+ LPD +I+H SP + LA GL IA L L +
Sbjct: 584 PVLNLGLPDEFIDHGSPEELLAELGLDAEGIARRILEWLKARSK 627
|
Length = 627 |
| >gnl|CDD|177878 PLN02234, PLN02234, 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Score = 698 bits (1801), Expect = 0.0
Identities = 347/658 (52%), Positives = 451/658 (68%), Gaps = 47/658 (7%)
Query: 41 SRINLCPS-----SSSITSSKLVTVSRICALPDIDDFFWDKEPTPILDLVENPLRLKSLT 95
S IN PS SS++S+K V R + +++ ++ PTP+LD + +P+ +K+L+
Sbjct: 22 SYINRNPSLKYLKPSSMSSTKYSKV-RATTFSEKGEYYSNRPPTPLLDTINHPMHMKNLS 80
Query: 96 IKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYA 155
IKELK L+ E+RS++ VSKT L S+L VELTVALH++F+ P DKILWDVG Q+Y
Sbjct: 81 IKELKVLSDELRSDVIFNVSKTGGHLGSNLGVVELTVALHYIFNTPHDKILWDVGHQSYP 140
Query: 156 HKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRE 215
HKILTGRR + T+R+ +G+SGYT R ESE+D F GH ++SAGLGMAV RD+KG
Sbjct: 141 HKILTGRRGKMKTIRQTNGLSGYTKRRESEHDSFGTGHSSTTLSAGLGMAVGRDLKGMNN 200
Query: 216 CIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIE-ESPKTSINALSST 274
+V+VI +G AGQAYEAM+NAGYL SNMIVILND++ P + P + ALS
Sbjct: 201 SVVSVIGDGAMTAGQAYEAMNNAGYLHSNMIVILNDNKQVSLPTANLDGPTQPVGALSCA 260
Query: 275 LSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIG 334
LSR+QS+ GMI STLFEELG +Y+G
Sbjct: 261 LSRLQSNC--------------------------------GMIRETSSTLFEELGFHYVG 288
Query: 335 PVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGASDSNSL 394
PVDGHNI+DL+S+L+ + S ++GPVL+HVVTE+ R ++++
Sbjct: 289 PVDGHNIDDLVSILETLKSTKTIGPVLIHVVTEKGRGYPYAERADDKYHGVLKFDPETGK 348
Query: 395 PFGNYSRT--YDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAE 452
F N S+T Y CF+EAL+ EAE DKDIV +HA M L LF+ +FP R FDVG+AE
Sbjct: 349 QFKNISKTQSYTSCFVEALIAEAEADKDIVAIHAAMGGGTMLNLFESRFPTRCFDVGIAE 408
Query: 453 QHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPT 512
QHAVTF+AGLAC GLKPFC I S+F+QRAYDQVV+DVD Q+LPVRF I AGL+G+DGPT
Sbjct: 409 QHAVTFAAGLACEGLKPFCTIYSSFMQRAYDQVVHDVDLQKLPVRFAIDRAGLMGADGPT 468
Query: 513 QCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPRGAIVRTDL-PGY 571
CGAFD+TFM+CLPNMIVMAPSDE EL +MVAT A+IDDRP CFRY RG + L PG
Sbjct: 469 HCGAFDVTFMACLPNMIVMAPSDEAELFNMVATAAAIDDRPSCFRYHRGNGIGVSLPPGN 528
Query: 572 RGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKL 631
+G+P++IG+G++L +G+ VALLGYG+ VQ CL+A ++LS+ G+ +TVADARFCKPLD+ L
Sbjct: 529 KGVPLQIGRGRILRDGERVALLGYGSAVQRCLEAASMLSERGLKITVADARFCKPLDVAL 588
Query: 632 VRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPT 689
+R L ++H LITVEEGSIGGFGSHV F+ALDGLLD +K + +I + S +
Sbjct: 589 IRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGKLK-----VYRTWITNGSTS 641
|
Length = 641 |
| >gnl|CDD|183601 PRK12571, PRK12571, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Score = 695 bits (1795), Expect = 0.0
Identities = 315/648 (48%), Positives = 409/648 (63%), Gaps = 30/648 (4%)
Query: 79 TPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVF 138
TP+LD ++ P L++L+ EL+QLA E+R+E+ S VS+T L SSL VELTVALH VF
Sbjct: 6 TPLLDRIKGPADLRALSDAELEQLADELRAEVISAVSETGGHLGSSLGVVELTVALHAVF 65
Query: 139 HAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSV 198
+ P DK++WDVG Q Y HKILTGRR TLR+K G+SG+T RSESEYDPF A H S+
Sbjct: 66 NTPKDKLVWDVGHQCYPHKILTGRRDRFRTLRQKGGLSGFTKRSESEYDPFGAAHSSTSI 125
Query: 199 SAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHP 258
SA LG A AR + +V VI +G+ AG AYEA++NAG D +IVILND+ S+ P
Sbjct: 126 SAALGFAKARALGQPDGDVVAVIGDGSLTAGMAYEALNNAGAADRRLIVILNDNEMSIAP 185
Query: 259 KIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIG 318
+ AL++ LS ++SS F +LR +AKG+ +R+ + + A + E GMIG
Sbjct: 186 --------PVGALAAYLSTLRSSDPFARLRAIAKGVEERLPGPLRDGARRARELVTGMIG 237
Query: 319 PQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENR------RA 372
TLFEELG Y+GP+DGH++E L+SVL+ + GPVLVHVVTE+ R
Sbjct: 238 GG--TLFEELGFTYVGPIDGHDMEALLSVLRAARARAD-GPVLVHVVTEKGRGYAPAEAD 294
Query: 373 ED----TQKSEAIEKQQEGASDSNSLPFGNYSRTYDDCFIEALVMEAEKDKDIVVVHAGM 428
ED K + + Q+ ++ S + +Y F E L EA +D DIV + A M
Sbjct: 295 EDKYHAVGKFDVVTGLQKKSAPS--------APSYTSVFGEELTKEAAEDSDIVAITAAM 346
Query: 429 EMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVND 488
+ L Q++FP R FDVG+AEQHAVTF+AGLA GLKPFC + S FLQR YDQ+++D
Sbjct: 347 PLGTGLDKLQKRFPNRVFDVGIAEQHAVTFAAGLAAAGLKPFCAVYSTFLQRGYDQLLHD 406
Query: 489 VDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVAS 548
V Q LPVRFV+ AGLVG+DG T GAFD+ F++ LPNM VMAP DE EL M+ T A+
Sbjct: 407 VALQNLPVRFVLDRAGLVGADGATHAGAFDLAFLTNLPNMTVMAPRDEAELRHMLRTAAA 466
Query: 549 IDDRPVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARAL 608
DD P+ R+PRG V ++P G + IGKG+V EG DVA+L GA + CL A L
Sbjct: 467 HDDGPIAVRFPRGEGVGVEIPA-EGTILGIGKGRVPREGPDVAILSVGAHLHECLDAADL 525
Query: 609 LSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLD 668
L GI VTVAD RF KPLD L L ++H +I E+G++GGFG+HV H +A GLLD
Sbjct: 526 LEAEGISVTVADPRFVKPLDEALTDLLVRHHIVVIVEEQGAMGGFGAHVLHHLADTGLLD 585
Query: 669 SGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTREA 716
G+K R + LPD +I+HAS + A AGLT IAA L R
Sbjct: 586 GGLKLRTLGLPDRFIDHASREEMYAEAGLTAPDIAAAVTGALARLSGV 633
|
Length = 641 |
| >gnl|CDD|129308 TIGR00204, dxs, 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Score = 557 bits (1437), Expect = 0.0
Identities = 272/637 (42%), Positives = 381/637 (59%), Gaps = 27/637 (4%)
Query: 82 LDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFHAP 141
L L+ +P L+ L+I EL++L E+R L VS + L S L VELTVALH+VF+ P
Sbjct: 1 LSLINSPQELRLLSIDELEKLCDELRRYLLESVSASGGHLASGLGTVELTVALHYVFNTP 60
Query: 142 VDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAG 201
D+ +WDVG Q Y HK+LTGRR TLR+K G+ G+ RSESEYD F+AGH S+SAG
Sbjct: 61 KDQFIWDVGHQAYPHKLLTGRREKFSTLRQKKGLHGFPKRSESEYDVFSAGHSSTSISAG 120
Query: 202 LGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIE 261
LG+AVA + KG V VI +G AG A+EA+++AG L ++MIVILND+ S+
Sbjct: 121 LGIAVAAEKKGADRKTVCVIGDGAITAGMAFEALNHAGDLKTDMIVILNDNEMSISE--- 177
Query: 262 ESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQG 321
++ ALS+ L++++S ++ LR+ K + ++ + A + +E +G++ P
Sbjct: 178 -----NVGALSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEESMKGLVVP-- 230
Query: 322 STLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENR---RAE-DTQK 377
T FEELG YIGPVDGH++ +LI L+ L GPV +H+ T++ + AE D
Sbjct: 231 GTFFEELGFNYIGPVDGHDLLELIETLKNAKKL--KGPVFLHIQTKKGKGYKPAEKDPIG 288
Query: 378 SEAIEK--QQEGASDSNSLPFGNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQ 435
+ G + +YS+ + D E A+KD IV + M L
Sbjct: 289 WHGVGPFDLSTGCLPKSKSALPSYSKIFSDTLCEL----AKKDNKIVGITPAMPEGSGLD 344
Query: 436 LFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLP 495
F KFP+RYFDV +AEQHAVTF+AG+A G KPF I S FLQRAYDQVV+DV Q+LP
Sbjct: 345 KFSRKFPDRYFDVAIAEQHAVTFAAGMAIEGYKPFVAIYSTFLQRAYDQVVHDVCIQKLP 404
Query: 496 VRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVC 555
V F I AG+VG+DG T GAFDI+++ C+PNM++MAPSDE+EL M+ T DD P+
Sbjct: 405 VLFAIDRAGIVGADGETHQGAFDISYLRCIPNMVIMAPSDENELRQMLYTGYHYDDGPIA 464
Query: 556 FRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGID 615
RYPRG V +L + IGK +VL +G+ + +LG+G +V L+ L++ GI+
Sbjct: 465 VRYPRGNAVGVELT-PEPEKLPIGKSEVLRKGEKILILGFGTLVPEALEVAESLNEKGIE 523
Query: 616 VTVADARFCKPLDIKLVRELCQNHTFLITVEEGSI-GGFGSHVSHFIALDGLLDSGVKWR 674
TV DARF KPLD +L+ E+ +H L+TVEE +I GG GS V F+ L V +
Sbjct: 524 ATVVDARFVKPLDEELILEIAASHEKLVTVEENAIMGGAGSAVLEFLMDQNKL---VPVK 580
Query: 675 PIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 711
+ +PD +I H + + LA GL + A L+ L
Sbjct: 581 RLGIPDFFIPHGTQEEVLAELGLDTAGMEAKILAWLA 617
|
DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP) [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridoxine, Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]. Length = 617 |
| >gnl|CDD|222031 pfam13292, DXP_synthase_N, 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Score = 369 bits (950), Expect = e-124
Identities = 145/285 (50%), Positives = 192/285 (67%), Gaps = 13/285 (4%)
Query: 82 LDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFHAP 141
LD + +P LK L+ +EL QLA EIR L VSKT L S+L VELT+ALH+VF +P
Sbjct: 1 LDKINSPADLKKLSEEELPQLADEIREFLIESVSKTGGHLGSNLGVVELTIALHYVFDSP 60
Query: 142 VDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAG 201
DKI+WDVG Q Y HKILTGRR HTLR+ G+SG+ RSESE+D F GH S+SA
Sbjct: 61 KDKIVWDVGHQAYVHKILTGRRDRFHTLRQYGGLSGFPKRSESEHDAFGVGHSSTSISAA 120
Query: 202 LGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIE 261
LGMA ARD+KG+ +V VI +G G A+EA++NAG L SN+IVILND+ S I
Sbjct: 121 LGMAKARDLKGEDRNVVAVIGDGALTGGMAFEALNNAGDLKSNLIVILNDNEMS----I- 175
Query: 262 ESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQG 321
SP ++ ALS L+R+++S ++ +L+E K + K+IG ++E A + +E +G++ P
Sbjct: 176 -SP--NVGALSKYLARLRTSPTYNRLKEEVKKVLKKIGPPLYELAKRAEEGLKGLVVP-- 230
Query: 322 STLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVT 366
LFEELG YIGP+DGH++E LI VL+ L GPVL+HVVT
Sbjct: 231 -NLFEELGFDYIGPIDGHDLEALIEVLENAKDLD--GPVLLHVVT 272
|
This family contains 1-deoxyxylulose-5-phosphate synthase (DXP synthase), an enzyme which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate, to yield 1-deoxy-D- xylulose-5-phosphate, a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). Length = 272 |
| >gnl|CDD|237053 PRK12315, PRK12315, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Score = 363 bits (934), Expect = e-117
Identities = 190/618 (30%), Positives = 314/618 (50%), Gaps = 77/618 (12%)
Query: 80 PILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFH 139
L+ + +P LK L++ EL+QLA EIR+ L S + +L VELT+ALH+VF+
Sbjct: 1 MYLEKINSPADLKKLSLDELEQLASEIRTALLEKDSAHGGHVGPNLGVVELTIALHYVFN 60
Query: 140 APVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVS 199
+P DKI+WDV Q+Y HK+LTGR+ D ++GYT+ ESE+D F GH S++
Sbjct: 61 SPKDKIVWDVSHQSYPHKMLTGRKEAFLDPDHYDDVTGYTNPEESEHDFFTVGHTSTSIA 120
Query: 200 AGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPK 259
G+A ARD+KG++ I+ VI +G+ G A E ++NA L SN+I+I+ND++ S
Sbjct: 121 LATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGLNNAAELKSNLIIIVNDNQMS---- 176
Query: 260 IEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGP 319
I E+ L ++LR+ G ++
Sbjct: 177 IAENHGGLYKNL-------------KELRD-TNGQSE----------------------- 199
Query: 320 QGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVT---------EENR 370
+ LF+ +GL Y DG++IE LI +EV + P+++H+ T EEN+
Sbjct: 200 --NNLFKAMGLDYRYVEDGNDIESLIEAFKEVKDIDH--PIVLHIHTLKGKGYQPAEENK 255
Query: 371 RAEDTQKSEAIEKQQEGASDSNSLPFGNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEM 430
A +E Q S +Y ++ L+ + ++ K +V ++A +
Sbjct: 256 EAFHWHMPFDLETGQSKVPAS--------GESYSSVTLDYLLKKIKEGKPVVAINAAIPG 307
Query: 431 DLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVD 490
L+ F++K+P++Y DVG+AEQ +V F++G+A G +P + S FLQRAYDQ+ +D+
Sbjct: 308 VFGLKEFRKKYPDQYVDVGIAEQESVAFASGIAANGARPVIFVNSTFLQRAYDQLSHDLA 367
Query: 491 QQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASID 550
P ++ + G+D T G FDI +S +PN++ +AP+ ++EL+ M+ +
Sbjct: 368 INNNPAVMIVFGGSISGND-VTHLGIFDIPMISNIPNLVYLAPTTKEELIAMLEWALTQH 426
Query: 551 DRPVCFRYPRGAIVR--TDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARAL 608
+ PV R P + T Y + E+ K G+ VA+L G + K
Sbjct: 427 EHPVAIRVPEHGVESGPTVDTDYSTLKYEVTK-----AGEKVAILALGDFYELGEKVAKK 481
Query: 609 LS-KLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSI-GGFGSHVSHFIALDGL 666
L +LGID T+ + +F LD +L+ +L ++H ++T+E+G + GGFG ++ + +
Sbjct: 482 LKEELGIDATLINPKFITGLDEELLEKLKEDHELVVTLEDGILDGGFGEKIARYYGNSDM 541
Query: 667 --LDSGVKWRPIVLPDNY 682
L+ G K D
Sbjct: 542 KVLNYGAKKE---FNDRV 556
|
Length = 581 |
| >gnl|CDD|238965 cd02007, TPP_DXS, Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis | Back alignment and domain information |
|---|
Score = 238 bits (609), Expect = 2e-74
Identities = 85/138 (61%), Positives = 104/138 (75%)
Query: 121 LKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTS 180
L S+L VELT+ALH+VF +P DKI+WDVG Q Y HKILTGRR HTLR+ G+SG+T
Sbjct: 4 LGSNLGVVELTLALHYVFDSPKDKIIWDVGHQAYPHKILTGRRDQFHTLRQYGGLSGFTK 63
Query: 181 RSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGY 240
RSESEYD F GH S+SA LGMAVARD+KGK+ ++ VI +G G A+EA++NAGY
Sbjct: 64 RSESEYDAFGTGHSSTSISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGY 123
Query: 241 LDSNMIVILNDSRHSLHP 258
L SNMIVILND+ S+ P
Sbjct: 124 LKSNMIVILNDNEMSISP 141
|
Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6). Length = 195 |
| >gnl|CDD|226467 COG3958, COG3958, Transketolase, C-terminal subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 209 bits (535), Expect = 5e-62
Identities = 113/317 (35%), Positives = 160/317 (50%), Gaps = 20/317 (6%)
Query: 402 TYDDCFIEALVMEAEKDKDIVVVHAGMEMDLS----LQLFQEKFPERYFDVGMAEQHAVT 457
+ + E L K+ DIVV+ A DLS F ++FP+R+F+VG+AEQ V
Sbjct: 8 SLRKVYGETLAELGRKNSDIVVLDA----DLSSSTKTGYFAKEFPDRFFNVGIAEQDMVG 63
Query: 458 FSAGLACGGLKPFCIIPSAFL-QRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCG 515
+AGLA G KPF +AFL +RA++Q+ N + L V+ V T AG+ G DG +
Sbjct: 64 TAAGLALAGKKPFVSTFAAFLSRRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGSSHQA 123
Query: 516 AFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPRGAI-VRTDLPGYRGI 574
DI M LPNM V+AP+D E ++ +A PV R RG + V D GY
Sbjct: 124 LEDIAIMRGLPNMTVIAPADAVETRAILDQIAD-YKGPVYMRLGRGKVPVVVDEGGYT-- 180
Query: 575 PIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRE 634
EIGK VL +G D+ ++ G MV L+A +L K GI V + KP+D + + +
Sbjct: 181 -FEIGKANVLRDGSDLTIIATGVMVAEALEAAEILKKEGISAAVINMFTIKPIDEQAILK 239
Query: 635 LCQNHTFLITVEEGSI-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLA 693
+ ++T EE SI GG GS V+ ++ +G R I +PD + + L
Sbjct: 240 AARETGRIVTAEEHSIIGGLGSAVAEVLSENGP----TPMRRIGVPDTFGRSGKADELLD 295
Query: 694 LAGLTGHHIAATALSLL 710
GL IAA L LL
Sbjct: 296 YYGLDPESIAARVLELL 312
|
Length = 312 |
| >gnl|CDD|132916 cd07033, TPP_PYR_DXS_TK_like, Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins | Back alignment and domain information |
|---|
Score = 197 bits (504), Expect = 1e-59
Identities = 74/155 (47%), Positives = 94/155 (60%), Gaps = 2/155 (1%)
Query: 407 FIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGG 466
F EAL+ A+KD IV + A + L F +KFP+R+ DVG+AEQ+ V +AGLA G
Sbjct: 3 FGEALLELAKKDPRIVALSADLGGSTGLDKFAKKFPDRFIDVGIAEQNMVGIAAGLALHG 62
Query: 467 LKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCL 525
LKPF S FLQRAYDQ+ +DV Q LPV+FV T AG+ VG DGPT G DI + +
Sbjct: 63 LKPFVSTFSFFLQRAYDQIRHDVALQNLPVKFVGTHAGISVGEDGPTHQGIEDIALLRAI 122
Query: 526 PNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPR 560
PNM V+ P+D +E + D PV R PR
Sbjct: 123 PNMTVLRPADANETAAALEAALEYDG-PVYIRLPR 156
|
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Like many TPP-dependent enzymes DXS and TK are homodimers having a PYR and a PP domain on the same subunit. TK has two active sites per dimer which lie between PYR and PP domains of different subunits. For DXS each active site is located at the interface of a PYR and a PP domain from the same subunit. E1-PDHc is an alpha2beta2 dimer-of-heterodimers having two active sites but having the PYR and PP domains arranged on separate subunits, the PYR domains on the beta subunits, the PP domains on the alpha subunits. DXS is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis, it catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. TK also plays a central role in the Calvin cycle in plants. PDHc catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. This subfamily includes the beta subunits of the E1 component of the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). ADC participates in the breakdown of acetoin. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate during the breakdown of branched chain amino acids. Length = 156 |
| >gnl|CDD|217226 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 4e-38
Identities = 54/163 (33%), Positives = 75/163 (46%), Gaps = 14/163 (8%)
Query: 409 EALVMEAEKDKDIVVVHAGMEMDLS----LQLFQEKFPE---RYFDVGMAEQHAVTFSAG 461
EAL A++D +V A D++ P+ R D G+AEQ V + G
Sbjct: 11 EALAELAKRDPRVVGGGA----DVAGGTFTVTKGLLHPQGDGRVIDTGIAEQAMVGIANG 66
Query: 462 LAC-GGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDI 519
+A G L P F RA D + + +LPV FV+T + VG DGPT D+
Sbjct: 67 MALHGLLPPVEATFGDFANRADDAIRHYAALGKLPVPFVVTRDPIGVGEDGPTHQSQEDL 126
Query: 520 TFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPRGA 562
F+ +PN+ V+ PSD E ++ A DD PV R PR
Sbjct: 127 AFLRAIPNLKVVRPSDAAETKGLLRA-AIEDDGPVVLRLPRQL 168
|
This family includes transketolase enzymes, pyruvate dehydrogenases, and branched chain alpha-keto acid decarboxylases. Length = 172 |
| >gnl|CDD|214865 smart00861, Transket_pyr, Transketolase, pyrimidine binding domain | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 2e-37
Identities = 45/120 (37%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 446 FDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL 505
D G+AEQ V F+AGLA GL+P I F RA DQ+ + +PV F G
Sbjct: 18 IDTGIAEQAMVGFAAGLALHGLRPVVEIFFTFFDRAKDQIRSAGASGNVPVVFRHDGGGG 77
Query: 506 VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPRGAIVR 565
VG DGPT D + +P + V+APSD E ++ DD PV R R ++ R
Sbjct: 78 VGEDGPTHHSIEDEALLRAIPGLKVVAPSDPAEAKGLLRAAIR-DDGPVVIRLERKSLYR 136
|
Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. Length = 136 |
| >gnl|CDD|217227 pfam02780, Transketolase_C, Transketolase, C-terminal domain | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 5e-35
Identities = 48/125 (38%), Positives = 63/125 (50%), Gaps = 2/125 (1%)
Query: 579 GKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQN 638
GK ++L EG DV ++ YG+MV L+A L+K GI V D R KPLD + E +
Sbjct: 1 GKAEILREGDDVTIVAYGSMVHEALEAAEELAKEGISAEVIDLRTVKPLDEDTILESVKK 60
Query: 639 HTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGL 697
L+ VEE GGFGS V+ +A +G + PD I H P +LA GL
Sbjct: 61 TGRLVVVEEAVKRGGFGSEVAAALAEEGFDYLDAPVLRVGGPDTPIPHG-PALELAYLGL 119
Query: 698 TGHHI 702
T I
Sbjct: 120 TAEKI 124
|
The C-terminal domain of transketolase has been proposed as a regulatory molecule binding site. Length = 124 |
| >gnl|CDD|185502 PTZ00182, PTZ00182, 3-methyl-2-oxobutanate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 2e-27
Identities = 81/273 (29%), Positives = 121/273 (44%), Gaps = 29/273 (10%)
Query: 410 ALVMEAEKDKDIV-----VVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLAC 464
AL E +D + V G + L + P+R FD + EQ F+ G A
Sbjct: 44 ALDEELARDPKVFVLGEDVAQYGGVYKCTKGLLDKYGPDRVFDTPITEQGFAGFAIGAAM 103
Query: 465 GGLKPFCIIPSA-FLQRAYDQVVNDVDQQR------LPVRFVITSA-GLVGSDGP--TQC 514
GL+P A F+ A+DQ+VN+ + R VI G VG G +Q
Sbjct: 104 NGLRPIAEFMFADFIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGHGGAYHSQS 163
Query: 515 GAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI-DDRPVCFRYP----RGAIVRTDLP 569
F+ F P + V+APSD ++ ++ A+I D PV F P R ++
Sbjct: 164 --FEAYFAHV-PGLKVVAPSDPEDAKGLL--KAAIRDPNPVVFFEPKLLYRESVEVVPEA 218
Query: 570 GYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDI 629
Y + +GK KV+ EGKDV ++GYG+ V LKA L+K GI V D R +P D
Sbjct: 219 DYT---LPLGKAKVVREGKDVTIVGYGSQVHVALKAAEELAKEGISCEVIDLRSLRPWDR 275
Query: 630 KLVRELCQNHTFLITVEEGSI-GGFGSHVSHFI 661
+ + + + + V E G G+ ++ I
Sbjct: 276 ETIVKSVKKTGRCVIVHEAPPTCGIGAEIAAQI 308
|
Length = 355 |
| >gnl|CDD|235639 PRK05899, PRK05899, transketolase; Reviewed | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 6e-26
Identities = 69/285 (24%), Positives = 104/285 (36%), Gaps = 36/285 (12%)
Query: 439 EKFPERYFDVGMAEQHAVTFSAGLA-CGGLKPFCIIPSAFLQRAYDQV-VNDVDQQRLPV 496
E + RY G+ E + GLA GG PF F A + + + + +LPV
Sbjct: 325 EDYSGRYIHYGVREFAMAAIANGLALHGGFIPFGGTFLVFSDYARNAIRLAAL--MKLPV 382
Query: 497 RFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVC 555
+V T + VG DGPT + + +PN+ V+ P+D +E D P
Sbjct: 383 IYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLTVIRPADANETAAAWKYALERKDGPSA 442
Query: 556 FRYPRGAIVRTDLPGYRGIPIE---IGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKL 612
+ R +LP E G VL + DV L+ G+ V L+A L
Sbjct: 443 L-----VLTRQNLPVLERTAQEEGVAKGGYVLRDDPDVILIATGSEVHLALEAADELEAE 497
Query: 613 GIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVK 672
GI V V + D Q+ + +V + V+ +A++
Sbjct: 498 GIKVRVVSMPSTELFDE-------QDAAYKESV-------LPAAVTARVAVEA--GVADG 541
Query: 673 WRPIVLPDNY---IEH----ASPTQQLALAGLTGHHIAATALSLL 710
W V D I+ A + G T +I A A LL
Sbjct: 542 WYKYVGLDGKVLGIDTFGASAPADELFKEFGFTVENIVAAAKELL 586
|
Length = 586 |
| >gnl|CDD|223101 COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 6e-20
Identities = 86/290 (29%), Positives = 120/290 (41%), Gaps = 59/290 (20%)
Query: 409 EALVMEAEKDKDIVV-------------VHAGMEMDLSLQLFQEKF-PERYFDVGMAEQH 454
EA+ E E+D+ +VV V G+ QEKF ER D +AE
Sbjct: 10 EAMDEEMERDERVVVLGEDVGVYGGVFRVTKGL---------QEKFGEERVIDTPIAESG 60
Query: 455 AVTFSAGLACGGLKPFCIIPSA-FLQRAYDQVVNDVDQQR------LPVRFVITSAGLVG 507
+ G A GL+P I A F+ A+DQ+VN + R V VI + G
Sbjct: 61 IAGIAVGAALTGLRPIVEIQFADFIYPAFDQIVNQAAKIRYRSGGQFTVPIVIRTPNGGG 120
Query: 508 SDGP---TQCGAFDITFMSCLPNMIVMAPS---DEDELVDMVATVASI-DDRPVCF---- 556
G +Q + +P + V+ PS D L A+I D PV F
Sbjct: 121 IGGGAQHSQSLE---ALFAHIPGLKVVMPSTPYDAKGL-----LKAAIRDPDPVIFLEHK 172
Query: 557 ---RYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLG 613
R +G + Y I +GK K++ EG DV ++ YGAMV L+A L K G
Sbjct: 173 RLYRSFKGEV---PEEDYT---IPLGKAKIVREGSDVTIVTYGAMVHTALEAAEELEKEG 226
Query: 614 IDVTVADARFCKPLDIKLVRELCQNHTFLITVEEG-SIGGFGSHVSHFIA 662
I V D R PLD + + + L+ V E GG G+ ++ IA
Sbjct: 227 ISAEVIDLRTLSPLDKETIIASVKKTGRLVIVHEAPKTGGIGAEIAALIA 276
|
Length = 324 |
| >gnl|CDD|238965 cd02007, TPP_DXS, Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 5e-18
Identities = 32/51 (62%), Positives = 37/51 (72%), Gaps = 2/51 (3%)
Query: 320 QGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENR 370
LFEELG YIGPVDGHNIE LI VL+EV L GPVL+HVVT++ +
Sbjct: 145 TPGNLFEELGFRYIGPVDGHNIEALIKVLKEVKDL--KGPVLLHVVTKKGK 193
|
Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6). Length = 195 |
| >gnl|CDD|169719 PRK09212, PRK09212, pyruvate dehydrogenase subunit beta; Validated | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 5e-17
Identities = 77/285 (27%), Positives = 124/285 (43%), Gaps = 38/285 (13%)
Query: 402 TYDDCFIEALVMEAEKDKDIVVVHAGMEM-------DLSLQLFQEKFPERYFDVGMAEQH 454
T + +A+ E E+D + ++ G E+ ++ L ++ P+R D + E
Sbjct: 5 TVREALRDAMQEEMERDPKVFLM--GEEVGEYQGAYKVTQGLLEQFGPKRVIDTPITEHG 62
Query: 455 AVTFSAGLACGGLKPFCIIPS-AFLQRAYDQVVNDV--------DQQRLPVRF--VITSA 503
+ G A GL+P + F +A DQ+VN Q + P+ F +A
Sbjct: 63 FAGLAVGAAFAGLRPIVEFMTFNFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPNGAA 122
Query: 504 GLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPRGAI 563
V + +QC A + S +P + V+AP + ++ T A D PV F +
Sbjct: 123 ARVAAQH-SQCYA---AWYSHIPGLKVVAPYFAADCKGLLKT-AIRDPNPVIF------L 171
Query: 564 VRTDLPGYRG------IPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVT 617
L G+ I IGK +L EG DV ++ + V+ L+A LL K GI V
Sbjct: 172 ENEILYGHSHEVPEEEESIPIGKAAILREGSDVTIVTFSIQVKLALEAAELLEKEGISVE 231
Query: 618 VADARFCKPLDIKLVRELCQNHTFLITVEEG-SIGGFGSHVSHFI 661
V D R +PLD + + E + L+ VEEG G G+ ++ I
Sbjct: 232 VIDLRTLRPLDTETIIESVKKTNRLVVVEEGWPFAGVGAEIAALI 276
|
Length = 327 |
| >gnl|CDD|132915 cd06586, TPP_enzyme_PYR, Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 1e-16
Identities = 39/162 (24%), Positives = 55/162 (33%), Gaps = 14/162 (8%)
Query: 405 DCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQE--KFPERYFDVGMAEQHAVTFSAGL 462
F E L V G D L + +R D + E A +AG
Sbjct: 1 AAFAEVLTAWG------VRHVFGYPGDEISSLLDALREGDKRIIDTVIHELGAAGAAAGY 54
Query: 463 ACGGLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521
A G P I+ L A + + D + LPV F+I + G+ T FD+
Sbjct: 55 ARAGGPPVVIVTSGTGLLNAINGLA-DAAAEHLPVVFLIGARGISAQAKQTFQSMFDLGM 113
Query: 522 MSCLPNMIVMAPSDEDELVDMVATVASIDD---RPVCFRYPR 560
+P + +PS EL + PV R PR
Sbjct: 114 YRSIPEANISSPSPA-ELPAGIDHAIRTAYASQGPVVVRLPR 154
|
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate decarboxylase (ComDE), and the E1 component of human pyruvate dehydrogenase complex (E1- PDHc) the PYR and PP domains appear on different subunits. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. For many of these enzymes the active sites lie between PP and PYR domains on different subunits. However, for the homodimeric enzymes 1-deoxy-D-xylulose 5-phosphate synthase (DXS) and Desulfovibrio africanus pyruvate:ferredoxin oxidoreductase (PFOR), each active site lies at the interface of the PYR and PP domains from the same subunit. Length = 154 |
| >gnl|CDD|215368 PLN02683, PLN02683, pyruvate dehydrogenase E1 component subunit beta | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 2e-13
Identities = 69/236 (29%), Positives = 98/236 (41%), Gaps = 36/236 (15%)
Query: 436 LFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFC-IIPSAFLQRAYDQVVNDVDQQ-- 492
L Q+ P+R D + E G A GLKP + F +A D ++N +
Sbjct: 67 LLQKYGPDRVLDTPITEAGFTGIGVGAAYAGLKPVVEFMTFNFSMQAIDHIINSAAKTNY 126
Query: 493 ------RLPVRFVITSAGLVGSDGP-TQCGAFDITFMSCLPNMIVMAP-SDEDELVDMVA 544
+P+ F + G +QC F + S P + V+AP S ED + A
Sbjct: 127 MSAGQISVPIVFRGPNGAAAGVGAQHSQC--FAAWYSSV-PGLKVLAPYSSEDARGLLKA 183
Query: 545 TVASIDDRPVCF---------RYPRGAIVRTD---LPGYRGIPIEIGKGKVLVEGKDVAL 592
+ D PV F +P A V LP IGK K+ EGKDV +
Sbjct: 184 AIR--DPDPVVFLENELLYGESFPVSAEVLDSSFVLP--------IGKAKIEREGKDVTI 233
Query: 593 LGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEG 648
+ + MV LKA +L+K GI V + R +PLD + + L+TVEEG
Sbjct: 234 VAFSKMVGYALKAAEILAKEGISAEVINLRSIRPLDRDTINASVRKTNRLVTVEEG 289
|
Length = 356 |
| >gnl|CDD|223100 COG0021, TktA, Transketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 1e-12
Identities = 71/291 (24%), Positives = 105/291 (36%), Gaps = 45/291 (15%)
Query: 439 EKFPERYFDVGMAEQHAVTFSAGLAC-GGLKPFCIIPSAFLQRAYDQVVNDVDQQRL--- 494
E + RY G+ E G+A GG P+ F A V RL
Sbjct: 398 ENYAGRYIHFGVREFAMAAIMNGIALHGGFIPYGGTFLVFSDYARPAV-------RLAAL 450
Query: 495 ---PVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASID 550
PV +V T + VG DGPT + + +PN+ V+ P+D +E
Sbjct: 451 MGLPVIYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLSVIRPADANETAAAWKYALERK 510
Query: 551 DRPVCFRYPRGAIVRTDLPGYRGIPIE--IGKGKVLVEGK----DVALLGYGAMVQNCLK 604
D P + R +LP +E VL + DV L+ G+ V+ ++
Sbjct: 511 DGPTAL-----ILTRQNLPVLERTDLEGVAKGAYVLKDSGGEDPDVILIATGSEVELAVE 565
Query: 605 ARALLSKLGIDVTVADARFCKPLDIKLVRE-----LCQNHTFLITVEEGSIGGFGSHVSH 659
A L GI V V L K E L T + +E GS G+
Sbjct: 566 AAKELEAEGIKVRVVSM-PSFELFEKQDEEYRESVLPGAVTARVAIEAGSALGW----YK 620
Query: 660 FIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLL 710
++ LDG ++ D++ A + G T ++ A A SLL
Sbjct: 621 YVGLDGA---------VIGMDSFGASAPGDELFKEFGFTVENVVAKAKSLL 662
|
Length = 663 |
| >gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 4e-11
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 578 IGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQ 637
IGK ++ EGKDV ++ + + LKA L+K GID V D R +P+D + + E +
Sbjct: 331 IGKARIHREGKDVTIVSFSIGMTYALKAAEELAKEGIDAEVIDLRTIRPMDTETIVESVK 390
Query: 638 NHTFLITVEEG-SIGGFGSHVS 658
L+TVEEG G G+ ++
Sbjct: 391 KTNRLVTVEEGWPQSGVGAEIA 412
|
Length = 464 |
| >gnl|CDD|132919 cd07036, TPP_PYR_E1-PDHc-beta_like, Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 6e-08
Identities = 49/169 (28%), Positives = 72/169 (42%), Gaps = 31/169 (18%)
Query: 409 EALVMEAEKDKDIVV----VHA-----GMEMDLSLQLFQEKF-PERYFDVGMAEQHAVTF 458
EAL E E+D +VV V + L +KF P+R D +AE V
Sbjct: 5 EALDEEMERDPRVVVLGEDVGDYGGVFKVTKGL-----LDKFGPDRVIDTPIAEAGIVGL 59
Query: 459 SAGLACGGLKPFC-IIPSAFLQRAYDQVVNDV--------DQQRLPVRFVI-TSAGLVGS 508
+ G A GL+P I+ + F A+DQ+VN+ Q ++P+ VI G
Sbjct: 60 AVGAAMNGLRPIVEIMFADFALPAFDQIVNEAAKLRYMSGGQFKVPI--VIRGPNGGGIG 117
Query: 509 DGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI-DDRPVCF 556
G + + F P + V+APS + + A+I DD PV F
Sbjct: 118 GGAQHSQSLEAWFAHI-PGLKVVAPSTPYDAKGL--LKAAIRDDDPVIF 163
|
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. E1-PDHc is an alpha2beta2 dimer-of-heterodimers having two active sites lying between PYR and PP domains of separate subunits, the PYR domains are arranged on the beta subunit, the PP domains on the alpha subunits. PDHc catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate during the breakdown of branched chain amino acids. Length = 167 |
| >gnl|CDD|173383 PTZ00089, PTZ00089, transketolase; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 8e-06
Identities = 54/193 (27%), Positives = 76/193 (39%), Gaps = 17/193 (8%)
Query: 435 QLFQEKFPE-RYFDVGMAEQHAVTFSAGL-ACGGLKPFCIIPSAFLQRAYDQVVNDVDQQ 492
F + PE RY G+ E G+ A GG PF F A V
Sbjct: 394 NDFTKASPEGRYIRFGVREHAMCAIMNGIAAHGGFIPFGATFLNFYGYALGAVRLAALSH 453
Query: 493 RLPVRFVIT--SAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASID 550
PV +V T S GL G DGPT + + PN++V+ P+D E A +
Sbjct: 454 -HPVIYVATHDSIGL-GEDGPTHQPVETLALLRATPNLLVIRPADGTETSGAYALALANA 511
Query: 551 DRPVCFRYPRGAIVRTDLPGYRGIPIE-IGKGKVLVE----GKDVALLGYGAMVQNCLKA 605
P + R + P G IE + KG +V + L+ G+ V C++A
Sbjct: 512 KTPTIL-----CLSRQNTPPLPGSSIEGVLKGAYIVVDFTNSPQLILVASGSEVSLCVEA 566
Query: 606 RALLSKLGIDVTV 618
LSK ++V V
Sbjct: 567 AKALSK-ELNVRV 578
|
Length = 661 |
| >gnl|CDD|215424 PLN02790, PLN02790, transketolase | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 53/197 (26%), Positives = 82/197 (41%), Gaps = 25/197 (12%)
Query: 437 FQEKFP-ERYFDVGMAEQHAVTFSAGLA--CGGLKPFCIIPSAFLQRAYDQVVNDVDQQR 493
FQ+ P ER G+ E G+A GL P+C + F D + +
Sbjct: 385 FQKDTPEERNVRFGVREHGMGAICNGIALHSSGLIPYC---ATFFVFT-DYMRAAMRLSA 440
Query: 494 L---PVRFVIT--SAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVAS 548
L V +V+T S GL G DGPT + + +PN++++ P+D +E +
Sbjct: 441 LSEAGVIYVMTHDSIGL-GEDGPTHQPIEHLASLRAMPNILMLRPADGNETAGAYKVAVT 499
Query: 549 IDDRPVCFRYPRGAIVRTDLPGYRGIPIE-IGKGKVLVEGK------DVALLGYGAMVQN 601
RP A+ R +P G IE + KG ++ D+ L+G G+ ++
Sbjct: 500 NRKRPTVL-----ALSRQKVPNLPGTSIEGVEKGGYVISDNSSGNKPDLILIGTGSELEI 554
Query: 602 CLKARALLSKLGIDVTV 618
KA L K G V V
Sbjct: 555 AAKAAKELRKEGKKVRV 571
|
Length = 654 |
| >gnl|CDD|177066 CHL00144, odpB, pyruvate dehydrogenase E1 component beta subunit; Validated | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 3e-05
Identities = 73/289 (25%), Positives = 123/289 (42%), Gaps = 47/289 (16%)
Query: 409 EALVMEAEKDKDIVVV-----HAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLA 463
EA+ E +D + V+ H G ++ L ++ R D +AE + G A
Sbjct: 12 EAIDEEMARDPRVFVIGEDVGHYGGSYKVTKGLHEKYGDLRVLDTPIAENSFTGMAIGAA 71
Query: 464 CGGLKPFCIIPS---AFLQRAYDQVVNDVDQQR--------LPVRFVITSAGLVGSDGPT 512
GL+P I+ FL A++Q+ N+ +P+ VI G VG
Sbjct: 72 MTGLRP--IVEGMNMGFLLLAFNQISNNAGMLHYTSGGNFTIPI--VIRGPGGVGR---- 123
Query: 513 QCGA-----FDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCF-----RYPRGA 562
Q GA + F S +P + ++A S ++ + A + PV F Y
Sbjct: 124 QLGAEHSQRLESYFQS-VPGLQIVACSTPYNAKGLLKS-AIRSNNPVIFFEHVLLYN--- 178
Query: 563 IVRTDLPG--YRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVAD 620
++ ++P Y +P+E K +V+ G D+ +L Y M + L+A +L + G D + D
Sbjct: 179 -LKEEIPDNEYL-LPLE--KAEVVRPGNDITILTYSRMRHHVLQAVKVLVEKGYDPEIID 234
Query: 621 ARFCKPLDIK-LVRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLD 668
KPLD+ + + + + H LI E GG G+ + I + L D
Sbjct: 235 LISLKPLDLGTISKSVKKTHKVLIVEECMKTGGIGAELIAQI-NEHLFD 282
|
Length = 327 |
| >gnl|CDD|232887 TIGR00232, tktlase_bact, transketolase, bacterial and yeast | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 51/190 (26%), Positives = 74/190 (38%), Gaps = 30/190 (15%)
Query: 444 RYFDVGMAEQHAVTFSAGLAC-GGLKPFCIIPSAFLQRAYDQVVNDVDQQRL------PV 496
Y G+ E G+A GG KP+ F+ A + RL PV
Sbjct: 397 NYIHYGVREFAMGAIMNGIALHGGFKPYGGTFLMFVDYARPAI-------RLAALMKLPV 449
Query: 497 RFVIT--SAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDEL-VDMVATVASIDDRP 553
+V T S G VG DGPT + + +PN+ V P D +E + S D
Sbjct: 450 IYVYTHDSIG-VGEDGPTHQPIEQLASLRAIPNLSVWRPCDGNETAAAWKYALESQDG-- 506
Query: 554 VCFRYPRGAIV-RTDLPGYRGIPIE-IGKG---KVLVEGKDVALLGYGAMVQNCLKARAL 608
P I+ R +LP +E + KG +G D+ L+ G+ V ++A
Sbjct: 507 -----PTALILSRQNLPQLEESSLEKVLKGGYVLKDSKGPDIILIATGSEVSLAVEAAKK 561
Query: 609 LSKLGIDVTV 618
L+ I V V
Sbjct: 562 LAAENIKVRV 571
|
This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous [Energy metabolism, Pentose phosphate pathway]. Length = 653 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 721 | |||
| COG1154 | 627 | Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme m | 100.0 | |
| PLN02225 | 701 | 1-deoxy-D-xylulose-5-phosphate synthase | 100.0 | |
| PLN02582 | 677 | 1-deoxy-D-xylulose-5-phosphate synthase | 100.0 | |
| PLN02234 | 641 | 1-deoxy-D-xylulose-5-phosphate synthase | 100.0 | |
| TIGR00204 | 617 | dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s | 100.0 | |
| PRK12571 | 641 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 100.0 | |
| PRK12315 | 581 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 100.0 | |
| PRK05444 | 580 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 100.0 | |
| KOG0523 | 632 | consensus Transketolase [Carbohydrate transport an | 100.0 | |
| PTZ00089 | 661 | transketolase; Provisional | 100.0 | |
| PLN02790 | 654 | transketolase | 100.0 | |
| PRK12753 | 663 | transketolase; Reviewed | 100.0 | |
| PRK05899 | 624 | transketolase; Reviewed | 100.0 | |
| TIGR00232 | 653 | tktlase_bact transketolase, bacterial and yeast. T | 100.0 | |
| PRK12754 | 663 | transketolase; Reviewed | 100.0 | |
| COG0021 | 663 | TktA Transketolase [Carbohydrate transport and met | 100.0 | |
| TIGR03186 | 889 | AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. S | 100.0 | |
| PRK09405 | 891 | aceE pyruvate dehydrogenase subunit E1; Reviewed | 100.0 | |
| PRK13012 | 896 | 2-oxoacid dehydrogenase subunit E1; Provisional | 100.0 | |
| PF13292 | 270 | DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate syn | 100.0 | |
| COG3958 | 312 | Transketolase, C-terminal subunit [Carbohydrate tr | 100.0 | |
| CHL00144 | 327 | odpB pyruvate dehydrogenase E1 component beta subu | 100.0 | |
| PRK09212 | 327 | pyruvate dehydrogenase subunit beta; Validated | 100.0 | |
| PLN02683 | 356 | pyruvate dehydrogenase E1 component subunit beta | 100.0 | |
| PRK11892 | 464 | pyruvate dehydrogenase subunit beta; Provisional | 100.0 | |
| PTZ00182 | 355 | 3-methyl-2-oxobutanate dehydrogenase; Provisional | 100.0 | |
| TIGR00759 | 885 | aceE pyruvate dehydrogenase E1 component, homodime | 100.0 | |
| COG0022 | 324 | AcoB Pyruvate/2-oxoglutarate dehydrogenase complex | 100.0 | |
| KOG0524 | 359 | consensus Pyruvate dehydrogenase E1, beta subunit | 100.0 | |
| PRK05261 | 785 | putative phosphoketolase; Provisional | 100.0 | |
| PRK09404 | 924 | sucA 2-oxoglutarate dehydrogenase E1 component; Re | 100.0 | |
| COG2609 | 887 | AceE Pyruvate dehydrogenase complex, dehydrogenase | 100.0 | |
| cd02007 | 195 | TPP_DXS Thiamine pyrophosphate (TPP) family, DXS s | 100.0 | |
| TIGR00239 | 929 | 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 compon | 100.0 | |
| COG3959 | 243 | Transketolase, N-terminal subunit [Carbohydrate tr | 100.0 | |
| KOG0525 | 362 | consensus Branched chain alpha-keto acid dehydroge | 100.0 | |
| PF00456 | 332 | Transketolase_N: Transketolase, thiamine diphospha | 100.0 | |
| cd02017 | 386 | TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) fam | 100.0 | |
| cd02012 | 255 | TPP_TK Thiamine pyrophosphate (TPP) family, Transk | 100.0 | |
| cd07033 | 156 | TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domai | 100.0 | |
| cd07036 | 167 | TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding | 100.0 | |
| PF02779 | 178 | Transket_pyr: Transketolase, pyrimidine binding do | 99.98 | |
| smart00861 | 168 | Transket_pyr Transketolase, pyrimidine binding dom | 99.96 | |
| COG1071 | 358 | AcoA Pyruvate/2-oxoglutarate dehydrogenase complex | 99.93 | |
| CHL00149 | 341 | odpA pyruvate dehydrogenase E1 component alpha sub | 99.92 | |
| PLN02269 | 362 | Pyruvate dehydrogenase E1 component subunit alpha | 99.91 | |
| cd02000 | 293 | TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) | 99.91 | |
| PLN02374 | 433 | pyruvate dehydrogenase (acetyl-transferring) | 99.9 | |
| TIGR03182 | 315 | PDH_E1_alph_y pyruvate dehydrogenase E1 component, | 99.9 | |
| TIGR03181 | 341 | PDH_E1_alph_x pyruvate dehydrogenase E1 component, | 99.89 | |
| PRK07119 | 352 | 2-ketoisovalerate ferredoxin reductase; Validated | 99.89 | |
| PF02780 | 124 | Transketolase_C: Transketolase, C-terminal domain; | 99.88 | |
| PF00676 | 300 | E1_dh: Dehydrogenase E1 component; InterPro: IPR00 | 99.88 | |
| TIGR03336 | 595 | IOR_alpha indolepyruvate ferredoxin oxidoreductase | 99.87 | |
| PRK08659 | 376 | 2-oxoglutarate ferredoxin oxidoreductase subunit a | 99.85 | |
| PRK09622 | 407 | porA pyruvate flavodoxin oxidoreductase subunit al | 99.84 | |
| KOG0225 | 394 | consensus Pyruvate dehydrogenase E1, alpha subunit | 99.84 | |
| PRK09627 | 375 | oorA 2-oxoglutarate-acceptor oxidoreductase subuni | 99.83 | |
| PRK08366 | 390 | vorA 2-ketoisovalerate ferredoxin oxidoreductase s | 99.8 | |
| COG3957 | 793 | Phosphoketolase [Carbohydrate transport and metabo | 99.79 | |
| PRK08367 | 394 | porA pyruvate ferredoxin oxidoreductase subunit al | 99.79 | |
| TIGR03710 | 562 | OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha s | 99.77 | |
| cd02016 | 265 | TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) fami | 99.7 | |
| cd02011 | 227 | TPP_PK Thiamine pyrophosphate (TPP) family, Phosph | 99.66 | |
| cd02013 | 196 | TPP_Xsc_like Thiamine pyrophosphate (TPP) family, | 99.66 | |
| cd02004 | 172 | TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) fam | 99.64 | |
| cd00568 | 168 | TPP_enzymes Thiamine pyrophosphate (TPP) enzyme fa | 99.63 | |
| cd02006 | 202 | TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl s | 99.62 | |
| cd02003 | 205 | TPP_IolD Thiamine pyrophosphate (TPP) family, IolD | 99.61 | |
| cd02015 | 186 | TPP_AHAS Thiamine pyrophosphate (TPP) family, Acet | 99.61 | |
| cd02010 | 177 | TPP_ALS Thiamine pyrophosphate (TPP) family, Aceto | 99.61 | |
| KOG1182 | 432 | consensus Branched chain alpha-keto acid dehydroge | 99.61 | |
| COG0028 | 550 | IlvB Thiamine pyrophosphate-requiring enzymes [ace | 99.61 | |
| PRK06163 | 202 | hypothetical protein; Provisional | 99.59 | |
| cd02008 | 178 | TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, | 99.58 | |
| cd03371 | 188 | TPP_PpyrDC Thiamine pyrophosphate (TPP) family, Pp | 99.58 | |
| cd02002 | 178 | TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC | 99.57 | |
| cd02014 | 178 | TPP_POX Thiamine pyrophosphate (TPP) family, Pyruv | 99.57 | |
| cd02001 | 157 | TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) famil | 99.55 | |
| cd03372 | 179 | TPP_ComE Thiamine pyrophosphate (TPP) family, ComE | 99.54 | |
| cd02009 | 175 | TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) fa | 99.53 | |
| TIGR03846 | 181 | sulfopy_beta sulfopyruvate decarboxylase, beta sub | 99.51 | |
| cd02005 | 183 | TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, | 99.5 | |
| PRK06154 | 565 | hypothetical protein; Provisional | 99.49 | |
| TIGR01504 | 588 | glyox_carbo_lig glyoxylate carboligase. Glyoxylate | 99.48 | |
| cd03376 | 235 | TPP_PFOR_porB_like Thiamine pyrophosphate (TPP fam | 99.47 | |
| PRK12270 | 1228 | kgd alpha-ketoglutarate decarboxylase; Reviewed | 99.47 | |
| PRK06457 | 549 | pyruvate dehydrogenase; Provisional | 99.47 | |
| PRK06965 | 587 | acetolactate synthase 3 catalytic subunit; Validat | 99.47 | |
| TIGR02418 | 539 | acolac_catab acetolactate synthase, catabolic. Ace | 99.47 | |
| PRK05858 | 542 | hypothetical protein; Provisional | 99.47 | |
| PRK08611 | 576 | pyruvate oxidase; Provisional | 99.46 | |
| PRK07979 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 99.46 | |
| TIGR02176 | 1165 | pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxid | 99.46 | |
| COG0674 | 365 | PorA Pyruvate:ferredoxin oxidoreductase and relate | 99.46 | |
| PRK07418 | 616 | acetolactate synthase 3 catalytic subunit; Reviewe | 99.45 | |
| PRK09124 | 574 | pyruvate dehydrogenase; Provisional | 99.45 | |
| PF02775 | 153 | TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-ter | 99.44 | |
| PRK08273 | 597 | thiamine pyrophosphate protein; Provisional | 99.44 | |
| PRK09107 | 595 | acetolactate synthase 3 catalytic subunit; Validat | 99.44 | |
| PRK08979 | 572 | acetolactate synthase 3 catalytic subunit; Validat | 99.44 | |
| cd03375 | 193 | TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-o | 99.44 | |
| TIGR02720 | 575 | pyruv_oxi_spxB pyruvate oxidase. Members of this f | 99.44 | |
| TIGR03297 | 361 | Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi | 99.43 | |
| PRK06546 | 578 | pyruvate dehydrogenase; Provisional | 99.43 | |
| PRK12474 | 518 | hypothetical protein; Provisional | 99.43 | |
| PRK06112 | 578 | acetolactate synthase catalytic subunit; Validated | 99.43 | |
| PRK11269 | 591 | glyoxylate carboligase; Provisional | 99.43 | |
| PRK08527 | 563 | acetolactate synthase 3 catalytic subunit; Validat | 99.43 | |
| PRK06456 | 572 | acetolactate synthase catalytic subunit; Reviewed | 99.43 | |
| PRK08322 | 547 | acetolactate synthase; Reviewed | 99.42 | |
| PRK08978 | 548 | acetolactate synthase 2 catalytic subunit; Reviewe | 99.42 | |
| PLN02470 | 585 | acetolactate synthase | 99.42 | |
| PRK06725 | 570 | acetolactate synthase 3 catalytic subunit; Validat | 99.42 | |
| PRK06882 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 99.41 | |
| TIGR03457 | 579 | sulphoacet_xsc sulfoacetaldehyde acetyltransferase | 99.41 | |
| PRK07586 | 514 | hypothetical protein; Validated | 99.41 | |
| PRK08155 | 564 | acetolactate synthase catalytic subunit; Validated | 99.4 | |
| PRK07789 | 612 | acetolactate synthase 1 catalytic subunit; Validat | 99.4 | |
| PRK06466 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 99.4 | |
| CHL00099 | 585 | ilvB acetohydroxyacid synthase large subunit | 99.4 | |
| PRK08617 | 552 | acetolactate synthase; Reviewed | 99.4 | |
| PRK07710 | 571 | acetolactate synthase catalytic subunit; Reviewed | 99.39 | |
| PRK06048 | 561 | acetolactate synthase 3 catalytic subunit; Reviewe | 99.39 | |
| PRK08199 | 557 | thiamine pyrophosphate protein; Validated | 99.39 | |
| TIGR00118 | 558 | acolac_lg acetolactate synthase, large subunit, bi | 99.39 | |
| TIGR03254 | 554 | oxalate_oxc oxalyl-CoA decarboxylase. In a number | 99.38 | |
| PRK09259 | 569 | putative oxalyl-CoA decarboxylase; Validated | 99.37 | |
| PRK07524 | 535 | hypothetical protein; Provisional | 99.37 | |
| PRK07064 | 544 | hypothetical protein; Provisional | 99.37 | |
| PRK08266 | 542 | hypothetical protein; Provisional | 99.37 | |
| PRK06276 | 586 | acetolactate synthase catalytic subunit; Reviewed | 99.36 | |
| PRK07525 | 588 | sulfoacetaldehyde acetyltransferase; Validated | 99.36 | |
| TIGR03393 | 539 | indolpyr_decarb indolepyruvate decarboxylase, Erwi | 99.34 | |
| COG4231 | 640 | Indolepyruvate ferredoxin oxidoreductase, alpha an | 99.34 | |
| PRK07282 | 566 | acetolactate synthase catalytic subunit; Reviewed | 99.34 | |
| PRK07092 | 530 | benzoylformate decarboxylase; Reviewed | 99.3 | |
| PRK11864 | 300 | 2-ketoisovalerate ferredoxin oxidoreductase subuni | 99.3 | |
| cd06586 | 154 | TPP_enzyme_PYR Pyrimidine (PYR) binding domain of | 99.29 | |
| cd02018 | 237 | TPP_PFOR Thiamine pyrophosphate (TPP family), Pyru | 99.28 | |
| PRK05778 | 301 | 2-oxoglutarate ferredoxin oxidoreductase subunit b | 99.27 | |
| PLN02573 | 578 | pyruvate decarboxylase | 99.27 | |
| PRK11869 | 280 | 2-oxoacid ferredoxin oxidoreductase subunit beta; | 99.26 | |
| PRK09628 | 277 | oorB 2-oxoglutarate-acceptor oxidoreductase subuni | 99.25 | |
| PRK07449 | 568 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1 | 99.25 | |
| TIGR03394 | 535 | indol_phenyl_DC indolepyruvate/phenylpyruvate deca | 99.22 | |
| PRK11866 | 279 | 2-oxoacid ferredoxin oxidoreductase subunit beta; | 99.2 | |
| PRK08327 | 569 | acetolactate synthase catalytic subunit; Validated | 99.2 | |
| PRK11867 | 286 | 2-oxoglutarate ferredoxin oxidoreductase subunit b | 99.2 | |
| KOG4166 | 675 | consensus Thiamine pyrophosphate-requiring enzyme | 99.17 | |
| TIGR02177 | 287 | PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta | 99.14 | |
| PRK11865 | 299 | pyruvate ferredoxin oxidoreductase subunit beta; P | 99.12 | |
| PRK13030 | 1159 | 2-oxoacid ferredoxin oxidoreductase; Provisional | 99.08 | |
| TIGR03336 | 595 | IOR_alpha indolepyruvate ferredoxin oxidoreductase | 99.08 | |
| COG3961 | 557 | Pyruvate decarboxylase and related thiamine pyroph | 99.02 | |
| PRK09193 | 1165 | indolepyruvate ferredoxin oxidoreductase; Validate | 99.01 | |
| PF09364 | 379 | XFP_N: XFP N-terminal domain; InterPro: IPR018970 | 99.01 | |
| PLN02980 | 1655 | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi | 98.93 | |
| COG3962 | 617 | Acetolactate synthase [Amino acid transport and me | 98.88 | |
| PRK13029 | 1186 | 2-oxoacid ferredoxin oxidoreductase; Provisional | 98.85 | |
| KOG0451 | 913 | consensus Predicted 2-oxoglutarate dehydrogenase, | 98.84 | |
| PF01855 | 230 | POR_N: Pyruvate flavodoxin/ferredoxin oxidoreducta | 98.79 | |
| COG0567 | 906 | SucA 2-oxoglutarate dehydrogenase complex, dehydro | 98.75 | |
| KOG1185 | 571 | consensus Thiamine pyrophosphate-requiring enzyme | 98.6 | |
| KOG0450 | 1017 | consensus 2-oxoglutarate dehydrogenase, E1 subunit | 98.55 | |
| KOG1184 | 561 | consensus Thiamine pyrophosphate-requiring enzyme | 98.42 | |
| COG4231 | 640 | Indolepyruvate ferredoxin oxidoreductase, alpha an | 98.3 | |
| COG3960 | 592 | Glyoxylate carboligase [General function predictio | 98.14 | |
| COG1013 | 294 | PorB Pyruvate:ferredoxin oxidoreductase and relate | 98.06 | |
| PF03894 | 179 | XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate | 97.79 | |
| KOG0523 | 632 | consensus Transketolase [Carbohydrate transport an | 97.75 | |
| COG1165 | 566 | MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-car | 97.73 | |
| cd07034 | 160 | TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) bindi | 97.7 | |
| TIGR03297 | 361 | Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi | 97.43 | |
| cd03377 | 365 | TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), | 97.39 | |
| cd07035 | 155 | TPP_PYR_POX_like Pyrimidine (PYR) binding domain o | 97.34 | |
| PRK09193 | 1165 | indolepyruvate ferredoxin oxidoreductase; Validate | 96.9 | |
| PRK13030 | 1159 | 2-oxoacid ferredoxin oxidoreductase; Provisional | 96.87 | |
| PF02776 | 172 | TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-ter | 96.63 | |
| TIGR03845 | 157 | sulfopyru_alph sulfopyruvate decarboxylase, alpha | 96.48 | |
| PRK13029 | 1186 | 2-oxoacid ferredoxin oxidoreductase; Provisional | 96.29 | |
| TIGR02176 | 1165 | pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxid | 96.1 | |
| COG4032 | 172 | Predicted thiamine-pyrophosphate-binding protein [ | 95.43 | |
| cd07039 | 164 | TPP_PYR_POX Pyrimidine (PYR) binding domain of POX | 95.22 | |
| PRK07586 | 514 | hypothetical protein; Validated | 94.87 | |
| cd02004 | 172 | TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) fam | 94.85 | |
| cd07037 | 162 | TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2- | 94.48 | |
| TIGR03457 | 579 | sulphoacet_xsc sulfoacetaldehyde acetyltransferase | 94.48 | |
| cd02001 | 157 | TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) famil | 94.42 | |
| PRK12474 | 518 | hypothetical protein; Provisional | 93.98 | |
| TIGR02418 | 539 | acolac_catab acetolactate synthase, catabolic. Ace | 93.85 | |
| cd07038 | 162 | TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding dom | 93.6 | |
| PRK06466 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 93.21 | |
| PRK08611 | 576 | pyruvate oxidase; Provisional | 93.18 | |
| PRK07710 | 571 | acetolactate synthase catalytic subunit; Reviewed | 93.18 | |
| PRK08527 | 563 | acetolactate synthase 3 catalytic subunit; Validat | 93.11 | |
| PRK07979 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 93.11 | |
| TIGR00118 | 558 | acolac_lg acetolactate synthase, large subunit, bi | 93.08 | |
| PRK05858 | 542 | hypothetical protein; Provisional | 93.04 | |
| PRK08155 | 564 | acetolactate synthase catalytic subunit; Validated | 93.02 | |
| PRK07282 | 566 | acetolactate synthase catalytic subunit; Reviewed | 92.95 | |
| PRK08266 | 542 | hypothetical protein; Provisional | 92.9 | |
| cd02014 | 178 | TPP_POX Thiamine pyrophosphate (TPP) family, Pyruv | 92.84 | |
| TIGR02177 | 287 | PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta | 92.83 | |
| PRK07092 | 530 | benzoylformate decarboxylase; Reviewed | 92.81 | |
| PRK07525 | 588 | sulfoacetaldehyde acetyltransferase; Validated | 92.78 | |
| cd02010 | 177 | TPP_ALS Thiamine pyrophosphate (TPP) family, Aceto | 92.76 | |
| COG0028 | 550 | IlvB Thiamine pyrophosphate-requiring enzymes [ace | 92.74 | |
| PRK11866 | 279 | 2-oxoacid ferredoxin oxidoreductase subunit beta; | 92.74 | |
| cd03376 | 235 | TPP_PFOR_porB_like Thiamine pyrophosphate (TPP fam | 92.64 | |
| PRK07064 | 544 | hypothetical protein; Provisional | 92.57 | |
| cd02015 | 186 | TPP_AHAS Thiamine pyrophosphate (TPP) family, Acet | 92.42 | |
| PRK08199 | 557 | thiamine pyrophosphate protein; Validated | 92.37 | |
| PRK06965 | 587 | acetolactate synthase 3 catalytic subunit; Validat | 92.33 | |
| PRK07789 | 612 | acetolactate synthase 1 catalytic subunit; Validat | 92.3 | |
| PRK07524 | 535 | hypothetical protein; Provisional | 92.28 | |
| PRK09107 | 595 | acetolactate synthase 3 catalytic subunit; Validat | 92.26 | |
| PRK06725 | 570 | acetolactate synthase 3 catalytic subunit; Validat | 92.21 | |
| PRK11864 | 300 | 2-ketoisovalerate ferredoxin oxidoreductase subuni | 92.2 | |
| PRK08322 | 547 | acetolactate synthase; Reviewed | 92.0 | |
| cd02009 | 175 | TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) fa | 91.87 | |
| PRK06457 | 549 | pyruvate dehydrogenase; Provisional | 91.76 | |
| TIGR03846 | 181 | sulfopy_beta sulfopyruvate decarboxylase, beta sub | 91.71 | |
| PRK11865 | 299 | pyruvate ferredoxin oxidoreductase subunit beta; P | 91.63 | |
| PRK08273 | 597 | thiamine pyrophosphate protein; Provisional | 91.52 | |
| PLN02573 | 578 | pyruvate decarboxylase | 91.45 | |
| PRK08617 | 552 | acetolactate synthase; Reviewed | 91.41 | |
| PRK11269 | 591 | glyoxylate carboligase; Provisional | 91.39 | |
| PRK06163 | 202 | hypothetical protein; Provisional | 91.32 | |
| PRK08978 | 548 | acetolactate synthase 2 catalytic subunit; Reviewe | 91.25 | |
| cd02018 | 237 | TPP_PFOR Thiamine pyrophosphate (TPP family), Pyru | 91.22 | |
| PRK08979 | 572 | acetolactate synthase 3 catalytic subunit; Validat | 91.21 | |
| PRK06882 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 91.21 | |
| PLN02470 | 585 | acetolactate synthase | 90.87 | |
| PRK09124 | 574 | pyruvate dehydrogenase; Provisional | 90.74 | |
| TIGR01504 | 588 | glyox_carbo_lig glyoxylate carboligase. Glyoxylate | 90.73 | |
| TIGR02720 | 575 | pyruv_oxi_spxB pyruvate oxidase. Members of this f | 90.55 | |
| PRK06112 | 578 | acetolactate synthase catalytic subunit; Validated | 90.44 | |
| cd02003 | 205 | TPP_IolD Thiamine pyrophosphate (TPP) family, IolD | 90.43 | |
| PRK06276 | 586 | acetolactate synthase catalytic subunit; Reviewed | 90.3 | |
| PRK09628 | 277 | oorB 2-oxoglutarate-acceptor oxidoreductase subuni | 89.99 | |
| PRK07449 | 568 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1 | 89.99 | |
| PRK11867 | 286 | 2-oxoglutarate ferredoxin oxidoreductase subunit b | 89.6 | |
| PF09363 | 203 | XFP_C: XFP C-terminal domain; InterPro: IPR018969 | 89.52 | |
| PRK06546 | 578 | pyruvate dehydrogenase; Provisional | 89.48 | |
| PRK06456 | 572 | acetolactate synthase catalytic subunit; Reviewed | 89.38 | |
| cd02013 | 196 | TPP_Xsc_like Thiamine pyrophosphate (TPP) family, | 89.03 | |
| PRK07418 | 616 | acetolactate synthase 3 catalytic subunit; Reviewe | 88.99 | |
| PRK06048 | 561 | acetolactate synthase 3 catalytic subunit; Reviewe | 88.91 | |
| cd02006 | 202 | TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl s | 88.88 | |
| TIGR03394 | 535 | indol_phenyl_DC indolepyruvate/phenylpyruvate deca | 88.66 | |
| CHL00099 | 585 | ilvB acetohydroxyacid synthase large subunit | 88.08 | |
| cd03372 | 179 | TPP_ComE Thiamine pyrophosphate (TPP) family, ComE | 88.0 | |
| TIGR03254 | 554 | oxalate_oxc oxalyl-CoA decarboxylase. In a number | 87.76 | |
| TIGR00173 | 432 | menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohex | 86.98 | |
| cd02007 | 195 | TPP_DXS Thiamine pyrophosphate (TPP) family, DXS s | 86.52 | |
| cd03375 | 193 | TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-o | 85.84 | |
| PRK11869 | 280 | 2-oxoacid ferredoxin oxidoreductase subunit beta; | 85.02 | |
| cd03371 | 188 | TPP_PpyrDC Thiamine pyrophosphate (TPP) family, Pp | 84.72 | |
| PRK09259 | 569 | putative oxalyl-CoA decarboxylase; Validated | 84.61 | |
| cd02012 | 255 | TPP_TK Thiamine pyrophosphate (TPP) family, Transk | 84.37 | |
| cd02002 | 178 | TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC | 84.36 | |
| cd00568 | 168 | TPP_enzymes Thiamine pyrophosphate (TPP) enzyme fa | 84.22 | |
| cd02008 | 178 | TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, | 83.93 | |
| cd07033 | 156 | TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domai | 83.89 | |
| cd06586 | 154 | TPP_enzyme_PYR Pyrimidine (PYR) binding domain of | 83.8 | |
| cd01460 | 266 | vWA_midasin VWA_Midasin: Midasin is a member of th | 83.45 | |
| PRK05778 | 301 | 2-oxoglutarate ferredoxin oxidoreductase subunit b | 83.27 | |
| COG1071 | 358 | AcoA Pyruvate/2-oxoglutarate dehydrogenase complex | 82.96 | |
| PRK08327 | 569 | acetolactate synthase catalytic subunit; Validated | 82.5 | |
| cd03027 | 73 | GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg | 81.66 | |
| PF02775 | 153 | TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-ter | 80.72 | |
| cd03028 | 90 | GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte | 80.44 |
| >COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-158 Score=1292.33 Aligned_cols=617 Identities=47% Similarity=0.752 Sum_probs=592.7
Q ss_pred ccccccCCCccccCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHHHHH
Q 004968 79 TPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKI 158 (721)
Q Consensus 79 ~~~l~~i~~p~~~~~~~~~~l~~la~eiR~~~~~~~~~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ 158 (721)
+|+|++|++|+|||+|+.+||++||+|||+++++.++++|||++|+||+||||+|||||||+|.|+||||||||+|+|||
T Consensus 2 ~~~L~~i~~P~dLk~ls~~eL~~La~EiR~~li~~vS~~GGHlgsnLGvVELTiALH~VF~sP~D~~IwDVgHQaYpHKi 81 (627)
T COG1154 2 YPLLDKINSPADLKKLSIEELPQLADEIREFLLEVVSATGGHLGSNLGVVELTIALHYVFDSPKDKLIWDVGHQAYPHKI 81 (627)
T ss_pred cchhhhcCCHHHHhhCCHHHHHHHHHHHHHHHHHHhccCCCccCCCcChhhhhHHHHHHhCCCCCCeEEecCcccchhHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHh
Q 004968 159 LTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNA 238 (721)
Q Consensus 159 ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A 238 (721)
||||+++|.|+||++|++|||+|.||+||.|++||+||+||+|+|||.|++++|++++|||||||||++.||+|||||+|
T Consensus 82 LTGR~e~f~tlRq~~GlsGf~~r~ESe~D~f~~GHsSTSiSaalG~A~A~~~~g~~~~vvaVIGDGAlt~GmA~EALN~a 161 (627)
T COG1154 82 LTGRREQFDTLRQKDGLSGFPKREESEHDWFGVGHSSTSISAALGMAKARDLKGEDRNVVAVIGDGALTGGMAFEALNNA 161 (627)
T ss_pred hcCchhhcchhhhcCCCCCCCCcccCCCcccccCchHHHHHHHhhHHHHHHhcCCCCcEEEEECCccccchHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred h-hcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhccc
Q 004968 239 G-YLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMI 317 (721)
Q Consensus 239 ~-~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 317 (721)
+ ..+.|+|||+|||+|+ |++|+|+++++|+++++++.|+++|+..+.+++..|.++...++++++.+|+++
T Consensus 162 g~~~~~~~iVILNDNeMS--------Is~nvGal~~~L~~l~~~~~y~~~~~~~kk~l~~~~~~~~~~~~r~e~~~K~l~ 233 (627)
T COG1154 162 GADLKSNLIVILNDNEMS--------ISPNVGALSKHLARLRSGPFYQSLREGGKKVLSKVGPPLKRFAKRAEESIKGLL 233 (627)
T ss_pred hhccCCCEEEEEeCCCcc--------cCCCccHHHHHHHHHhccchHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhccc
Confidence 9 5569999999999994 899999999999999999999999999999999888899999999999999988
Q ss_pred CCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccccCCC---CCCC
Q 004968 318 GPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGASD---SNSL 394 (721)
Q Consensus 318 ~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~~f---~~g~ 394 (721)
.| .++||+|||+|+||+||||+++|+.+|+.+|+ .++|++|||+|.|||||+|||+ ++.+|||+.|| ++|+
T Consensus 234 ~~--~~lFeelGf~YiGPiDGHni~~Li~~Lk~~kd--~~gPvllHv~T~KGKGY~pAE~--d~~~~H~v~~f~~~~tg~ 307 (627)
T COG1154 234 VP--GTLFEELGFNYIGPIDGHNLEELIPTLKNAKD--LKGPVLLHVVTKKGKGYKPAEE--DPIKYHGVGPFDPIETGQ 307 (627)
T ss_pred Cc--hhhHHHhCCeeECCcCCCCHHHHHHHHHHHhc--CCCCEEEEEEecCCCCCChhhc--ChhhccCCCCCCccccCc
Confidence 77 48999999999999999999999999999999 4899999999999999999999 89999999998 5677
Q ss_pred CCC--CCcccHHHHHHHHHHHHHHcCCCeEEEecCCCCccChHHHHHhCCCcEeeccccHHHHHHHHHHHHhCCCeeEEE
Q 004968 395 PFG--NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCI 472 (721)
Q Consensus 395 ~~~--~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~ 472 (721)
+.+ ++.++|+++|+++|++++++|++||+|||+|.+++||..|.++||+|||||||||||+|++|+|||.+|+||||+
T Consensus 308 ~~~~~~~~~sys~vf~~~L~~~a~~d~~ivaITaAM~~gtGL~~F~~~fP~R~fDVGIAEQHAVT~AAGlA~~G~kPvva 387 (627)
T COG1154 308 SKKSKPSAPSYTKVFGDTLCELAAKDEKIVAITAAMPEGTGLVKFSKKFPDRFFDVGIAEQHAVTFAAGLAAEGMKPVVA 387 (627)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEecCCCCCCChHHHHHhCchhheehhhhHHHHHHHHHHHHhCCCCCEEE
Confidence 655 566899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCCC
Q 004968 473 IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDR 552 (721)
Q Consensus 473 tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~ 552 (721)
+||+|+||||||++||+|+|++||+|+++|+|++|+||+|||+.+|++|+++||||+|++|+|++|+..|+.+|+..+++
T Consensus 388 IYSTFLQRAYDQliHDvaiqnLPV~faIDRAGivG~DG~TH~G~fDls~l~~iPnmvi~aP~de~el~~ml~ta~~~~~g 467 (627)
T COG1154 388 IYSTFLQRAYDQLIHDVAIQNLPVTFAIDRAGIVGADGPTHQGLFDLSFLRCIPNMVIMAPRDEEELRQMLYTALAQDDG 467 (627)
T ss_pred EecHHHHHHHHHHHHHHHhccCCeEEEEecCcccCCCCCccccHHHHHHHhcCCCcEEecCCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred CEEEEecCCCcccccCCCCCCcceecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHH
Q 004968 553 PVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLV 632 (721)
Q Consensus 553 P~~ir~~r~~~~~~~~p~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i 632 (721)
|+.|||||+++....... ...++++||++++++|.|++|+++|.++..|++|++.|.+.||+++|||+||+||+|++++
T Consensus 468 P~AiRyPrg~~~~~~~~~-~~~~~~~Gk~~i~~~G~~vail~~G~~~~~al~vae~L~~~Gi~~TVvd~rfvkPlD~~ll 546 (627)
T COG1154 468 PVAIRYPRGNGVGVILTP-ELEPLEIGKGELLKEGEKVAILAFGTMLPEALKVAEKLNAYGISVTVVDPRFVKPLDEALL 546 (627)
T ss_pred CeEEEecCCCCCCCCccc-ccccccccceEEEecCCcEEEEecchhhHHHHHHHHHHHhcCCCcEEEcCeecCCCCHHHH
Confidence 999999999876543222 2467889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhh
Q 004968 633 RELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 711 (721)
Q Consensus 633 ~~l~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 711 (721)
++++++++.+||+|||. .||||+.|++++...++ .++++++|+||.|++||+++++++.+|||++.|+++|.+++.
T Consensus 547 ~~La~~h~~~vtlEe~~~~GG~Gs~v~efl~~~~~---~~~v~~lglpd~fi~hg~~~el~~~~gLd~~~i~~~i~~~l~ 623 (627)
T COG1154 547 LELAKSHDLVVTLEENVVDGGFGSAVLEFLAAHGI---LVPVLNLGLPDEFIDHGSPEELLAELGLDAEGIARRILEWLK 623 (627)
T ss_pred HHHHhhcCeEEEEecCcccccHHHHHHHHHHhcCC---CCceEEecCChHhhccCCHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 99999999999999998 79999999999999987 478999999999999999999999999999999999999886
Q ss_pred cc
Q 004968 712 RT 713 (721)
Q Consensus 712 ~~ 713 (721)
..
T Consensus 624 ~~ 625 (627)
T COG1154 624 AR 625 (627)
T ss_pred hc
Confidence 53
|
|
| >PLN02225 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-151 Score=1290.56 Aligned_cols=697 Identities=71% Similarity=1.109 Sum_probs=623.6
Q ss_pred CCCCCCCCcccccccccccccccchhhhhhccccccccccc-ccccCCCCCCcccCcceeeccc-ccCCCCCcccCCCCC
Q 004968 1 MVTPSAKYPLELPLTAHCHGTLDQRKIEFLSSNISRELEIS-RINLCPSSSSITSSKLVTVSRI-CALPDIDDFFWDKEP 78 (721)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 78 (721)
|-|.++.||.- +++|.-|... -|.|.++|+....+..+ |.+.+.+.+ .+...++-.+- ...++.++|++++++
T Consensus 1 ~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (701)
T PLN02225 1 MGSASIGYQFG--ISARFYGNFN-LSSDITVSSLPCKLDVSIKSLFSAPSS--THKECSNRARVCCSLPNTDEYCDEKFE 75 (701)
T ss_pred CCccccccccc--ceeeeeeecC-cchhhhhhhcccccccchhhccccccc--cccccccccccccCCCccccccCCCCC
Confidence 56778899875 5889888775 46788898888877665 444444433 22223221111 124455589899988
Q ss_pred ccccccCCCccccCCCCHHHHHHHHHHHHHHHHHhH-hcCCCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHHHH
Q 004968 79 TPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIV-SKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHK 157 (721)
Q Consensus 79 ~~~l~~i~~p~~~~~~~~~~l~~la~eiR~~~~~~~-~~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~ 157 (721)
+|+|++||+|.|||+|+.+||++||+|||++|++.+ +++|||++||||+||||+|||||||.|+|+||||||||+|+||
T Consensus 76 ~~~L~~i~~P~dlk~L~~~eL~~La~EiR~~li~~v~s~~GGHl~snLGvVELTvALH~VFd~p~DkiiwDvgHQ~Y~HK 155 (701)
T PLN02225 76 TPILDSIETPLQLKNLSVKELKLLADEIRTELHSVLWKKTQKSMNPSFAAIELTLALHYVFRAPVDNILWDAVEQTYAHK 155 (701)
T ss_pred CchhhhcCCHHHHhhCCHHHHHHHHHHHHHHHHHHhhcccCCCcCCCccHHHHHHHHHHHhCCCCCceeeccccccchhh
Confidence 999999999999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred HHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHH
Q 004968 158 ILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSN 237 (721)
Q Consensus 158 ~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~ 237 (721)
|||||+++|.+ ||++|++|||+|.||+||.|++||+||+||+|+|||.|+++++++++||+|||||+|++||+|||||+
T Consensus 156 iLTGR~~~f~~-Rq~~GlsGf~~r~ES~~D~f~~GHssTSiSaalG~a~ardl~g~~~~vvaVIGDGaltgGma~EaLN~ 234 (701)
T PLN02225 156 VLTRRWSAIPS-RQKNGISGVTSQLESEYDSFGTGHGCNSISAGLGLAVARDIKGKRDRVVAVIDNATITAGQAYEAMSN 234 (701)
T ss_pred HhcCChhhcCc-cccCCcCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCCcEEEEEcCcchhhhhHHHHHhh
Confidence 99999999997 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhccc
Q 004968 238 AGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMI 317 (721)
Q Consensus 238 A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 317 (721)
|+..+.|+|||+|||+|+..|++..+...++|+++++|+++++++.|+++|+..+.+++.++..+..+.+++++++|+++
T Consensus 235 ~g~~~~~livILNDN~mSi~~n~~~~~~~~vG~ls~~l~~l~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 314 (701)
T PLN02225 235 AGYLDSNMIVILNDSRHSLHPNMEEGSKASISALSSIMSKIQSSKIFRKFRELAKAMTKRIGKGMYEWAAKVDEYARGMV 314 (701)
T ss_pred hhccCCCEEEEEeCCCCCCCCCCCCccCCccchHHHHHHHHhccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999522222222223399999999999999999999999999999998778888899999999998
Q ss_pred CCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccccCCCCCCCCCC
Q 004968 318 GPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGASDSNSLPFG 397 (721)
Q Consensus 318 ~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~~f~~g~~~~ 397 (721)
.+.+.++||+|||+|+||+||||+++|+++|+++|+.+.++|+||||+|+||+.. +||+..+
T Consensus 315 ~~~~~~lFe~lG~~Y~GpvDGHdi~~Li~~l~~~k~~~~~~PvlvHv~T~KGkd~------------------~tg~~~~ 376 (701)
T PLN02225 315 GPTGSTLFEELGLYYIGPVDGHNIEDLVCVLREVSSLDSMGPVLVHVITEENRDA------------------ETGKNIM 376 (701)
T ss_pred CCCccCcHHHcCCeEECccCCCCHHHHHHHHHHHHcCCCCCCEEEEEEecCCCCC------------------CCCCcCC
Confidence 7644589999999999999999999999999999986335999999999999831 2333222
Q ss_pred -CCcccHHHHHHHHHHHHHHcCCCeEEEecCCCCccChHHHHHhCCCcEeeccccHHHHHHHHHHHHhCCCeeEEEecHh
Q 004968 398 -NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSA 476 (721)
Q Consensus 398 -~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~tys~ 476 (721)
...++|+++|+++|.+++++|++|+++++||+.+++++.|+++||+||||+||||||||++|+|||++|++||+++|++
T Consensus 377 ~~~~~s~~~~f~~aL~~la~~D~~Iv~Itadm~~gtgl~~f~~~fPdRffDvGIAEQhaVt~AAGLA~~G~kPvv~iyst 456 (701)
T PLN02225 377 VKDRRTYSDCFVEALVMEAEKDRDIVVVHAGMEMDASLITFQERFPDRFFNVGMAEQHAVTFSAGLSSGGLKPFCIIPSA 456 (701)
T ss_pred CCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCccCcccHHHHHHHccccccccCccHHHHHHHHHHHHHCCCEEEEEeehh
Confidence 2357999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEE
Q 004968 477 FLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCF 556 (721)
Q Consensus 477 Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~i 556 (721)
|+|||||||+||+|++++||+|+++++|++|+||+|||+.+|+++||++|||+|++|+|+.|++.|+++|+...++|++|
T Consensus 457 FlqRAyDQI~~Dval~~lpV~~vid~aGlvg~DG~TH~g~~Dia~lr~IPnm~V~aPsD~~El~~mL~~A~~~~~gPv~I 536 (701)
T PLN02225 457 FLQRAYDQVVHDVDRQRKAVRFVITSAGLVGSDGPVQCGAFDIAFMSSLPNMIAMAPADEDELVNMVATAAYVTDRPVCF 536 (701)
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEECCccCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhcCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998666799999
Q ss_pred EecCCCcccccCCCCCCcceecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHh
Q 004968 557 RYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELC 636 (721)
Q Consensus 557 r~~r~~~~~~~~p~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~ 636 (721)
|+||+..+..+.+..+++++++||++++++|+|++||++|+|++.|++|++.|+++||+++|||+|||||||+++|.+++
T Consensus 537 R~pRg~~~~~~~~~~~~~~~~iGK~~vlreG~dvtIia~G~mv~~Al~AA~~L~~~GI~vtVIdlr~ikPLD~e~I~~~~ 616 (701)
T PLN02225 537 RFPRGSIVNMNYLVPTGLPIEIGRGRVLVEGQDVALLGYGAMVQNCLHAHSLLSKLGLNVTVADARFCKPLDIKLVRDLC 616 (701)
T ss_pred EecccccCCCCcCCCCCccccCcceEEEEeCCCEEEEeccHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCHHHHHHHH
Confidence 99998754322101123678899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhhcchhh
Q 004968 637 QNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTREA 716 (721)
Q Consensus 637 ~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~~~~~~ 716 (721)
++++.|||||||..||||++|++++.++++.+.+.+++++|+||+|+++|+++++++++|||+++|+++|+++++..+++
T Consensus 617 ~k~~~vVTvEE~~~GG~Gs~Va~~l~~~~~~~~~~~v~~iGipd~F~~~G~~~~ll~~~GLdae~I~~~i~~~l~~~~~~ 696 (701)
T PLN02225 617 QNHKFLITVEEGCVGGFGSHVAQFIALDGQLDGNIKWRPIVLPDGYIEEASPREQLALAGLTGHHIAATALSLLGRTREA 696 (701)
T ss_pred hhcCeEEEEcCCCCCchHHHHHHHHHhcCCCcCCCcEEEEecCCcCcCCCCHHHHHHHhCcCHHHHHHHHHHHHhhcccc
Confidence 99999999999988999999999999987533346899999999999999999999999999999999999999888888
Q ss_pred hhccC
Q 004968 717 LLLMC 721 (721)
Q Consensus 717 ~~~~~ 721 (721)
|.+|+
T Consensus 697 ~~~~~ 701 (701)
T PLN02225 697 LLLMS 701 (701)
T ss_pred eEecC
Confidence 88874
|
|
| >PLN02582 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-138 Score=1193.40 Aligned_cols=654 Identities=61% Similarity=1.005 Sum_probs=605.4
Q ss_pred CCCCCcccCCCCCccccccCCCccccCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCCCcccHHHHHHHHhcccCCCCcEE
Q 004968 66 LPDIDDFFWDKEPTPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKI 145 (721)
Q Consensus 66 ~~~~~~~~~~~~~~~~l~~i~~p~~~~~~~~~~l~~la~eiR~~~~~~~~~~~Gh~~sslg~vel~~aL~~vf~~p~D~i 145 (721)
+.+..+|....+.+|+|++|++|.|||+|+.++|+++|++||+++++++++++||++++||+||+++|||++|+.|+|+|
T Consensus 18 ~~~~~~~~~~~~~~~~l~~i~~p~dlk~l~~~~l~~la~~iR~~ii~~~~~~~GH~g~~Ls~vel~~aL~~~~~~p~Dr~ 97 (677)
T PLN02582 18 PEESAEYPSQRPPTPLLDTINYPIHMKNLSVKELKQLADELRSDVIFNVSKTGGHLGSSLGVVELTVALHYVFNAPQDKI 97 (677)
T ss_pred ccccccccCCCCCCchhhhCCCHHHHhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcCccccHHHHHHHHHHhhCCCCCeE
Confidence 34444554444568899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCchHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCC
Q 004968 146 LWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGT 225 (721)
Q Consensus 146 v~d~GH~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGa 225 (721)
|||+|||+|+||++|||+++|.++|++|+++|||++.++++|.|++||+|+++|+|+|+|+|+++++++++|||++|||+
T Consensus 98 i~s~GH~ay~~~~l~gr~~~l~~~r~~g~l~g~p~~~e~~~~~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~viGDG~ 177 (677)
T PLN02582 98 LWDVGHQSYPHKILTGRRDKMHTMRQTNGLSGFTKRAESEYDCFGTGHSSTTISAGLGMAVGRDLKGKKNNVVAVIGDGA 177 (677)
T ss_pred EEECcchHHHHHHHHccHHHhcccccCCCcCCCCCCCCCCCceeccchhhhhHHHHHHHHHHHHhcCCCCEEEEEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCcc-CCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHH
Q 004968 226 TMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIE-ESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHE 304 (721)
Q Consensus 226 l~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~-~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~ 304 (721)
+++|++|||||+|+.+++|+++|||||+++|+|+.. +++++++|+++++|++++.++.|+++|+..+.+++.++..+..
T Consensus 178 ~~~G~~~Ealn~a~~~~~~li~iv~~N~~~s~~~~~~~s~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (677)
T PLN02582 178 MTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPAPPVGALSSALSRLQSSRPLRELREVAKGVTKQIGGPMHE 257 (677)
T ss_pred cchhhHHHHHHHHHhhCcCEEEEEECCCCccccccccCCCCCCccHHHHHHHHHhcchhHHHHHHHHHHHHHhCcHhHHH
Confidence 999999999999999999999999999998898875 8999999999999999999999999999999999988766677
Q ss_pred HHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccc
Q 004968 305 WAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQ 384 (721)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~ 384 (721)
..+++++..+.++.|.+..+||+|||+|++++||||+++|.++|+++|+.+.++|++||++|.|||||++||+ ++.+|
T Consensus 258 ~~~~~~~~~k~~~~~~~~~~fe~~G~~y~g~iDGHd~~~L~~al~~~k~~~~~~P~vihv~T~KGkG~~~ae~--~~~~~ 335 (677)
T PLN02582 258 LAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLVTILREVKSTKTTGPVLIHVVTEKGRGYPYAER--AADKY 335 (677)
T ss_pred HHHHHHHHhhhccCccccchHHHcCCeEEeeeCCCCHHHHHHHHHHHHhcCCCCCEEEEEEecCCCCCChhhc--Chhhc
Confidence 7788999999988764447999999999999999999999999999998522689999999999999999998 78899
Q ss_pred cccCCC--CCCCCCC--CCcccHHHHHHHHHHHHHHcCCCeEEEecCCCCccChHHHHHhCCCcEeeccccHHHHHHHHH
Q 004968 385 QEGASD--SNSLPFG--NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSA 460 (721)
Q Consensus 385 Hg~~~f--~~g~~~~--~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~fp~R~~d~GIaE~~~v~~Aa 460 (721)
||+.+| ++|++.+ ...++|+++|+++|.+++++||+|+++++||++++++..|+++||+||||+||||||||++|+
T Consensus 336 H~~~~f~~~~g~~~~~~~~~~~~s~a~~~aL~~~a~~d~~vv~ita~m~g~~gl~~f~~~fP~R~fdvGIAEq~~vg~Aa 415 (677)
T PLN02582 336 HGVVKFDPATGKQFKVKAKTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFARRFPTRCFDVGIAEQHAVTFAA 415 (677)
T ss_pred CCCCCCCcccCCccCCCCCCcCHHHHHHHHHHHHHccCCCEEEEeCCCCCccchHHHHHHcCccccccCcCHHHHHHHHH
Confidence 999999 7776643 235689999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCeeEEEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHH
Q 004968 461 GLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELV 540 (721)
Q Consensus 461 GlA~~G~~p~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~ 540 (721)
|||+.|++||+++|++|++||||||+|++|++++||+|+++++|++|.||+|||+.+|++++|++||++|++|+|+.|++
T Consensus 416 GLA~~G~kPvv~~fs~Fl~RA~DQI~~dval~~lpVv~v~~~aG~vg~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~ 495 (677)
T PLN02582 416 GLACEGLKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELF 495 (677)
T ss_pred HHHHCCCeEEEEecHHHHHHHHHHHHHHHHhcCCCEEEEEECCCcccCCCCcccccHHHHHHhcCCCCEEEeeCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCEEEEecCCCcccccCCCC-CCcceecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEe
Q 004968 541 DMVATVASIDDRPVCFRYPRGAIVRTDLPGY-RGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVA 619 (721)
Q Consensus 541 ~~l~~a~~~~~~P~~ir~~r~~~~~~~~p~~-~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VI 619 (721)
.++++|+...++|++||+||+......++.. ..+.+++||++++++|+|++||++|++++.|++|++.|+++||+++||
T Consensus 496 ~~l~~al~~~~gPv~IR~pr~~~~~~~~~~~~~~~~~~iGk~~vlr~G~dvtIva~G~~v~~Al~Aa~~L~~~GI~~~VI 575 (677)
T PLN02582 496 HMVATAAAIDDRPSCFRYPRGNGIGVQLPPNNKGIPIEVGKGRILLEGERVALLGYGTAVQSCLAAASLLERHGLSATVA 575 (677)
T ss_pred HHHHHHHhCCCCCEEEEEecCCCCCcccCCcccccccccCceEEEEeCCCEEEEeecHHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999998766799999999987433223321 124678999999999999999999999999999999999999999999
Q ss_pred ecCccccccHHHHHHHhccCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCH
Q 004968 620 DARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTG 699 (721)
Q Consensus 620 d~~~l~PlD~e~i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~ 699 (721)
|++|++|||++++.+++++++.|||+||+..||||++|++++.+++....+.+++++|+||+|+++|+++++++++|||+
T Consensus 576 d~~~lkPlD~~~i~~~~k~~~~vVtvEe~~~GG~Gs~va~~l~~~~~~~~~~~v~~~Gi~d~F~~~G~~~~L~~~~GL~~ 655 (677)
T PLN02582 576 DARFCKPLDRALIRSLAKSHEVLITVEEGSIGGFGSHVAQFMALDGLLDGKLKWRPLVLPDRYIDHGAPADQLAEAGLTP 655 (677)
T ss_pred EcCcCCCCCHHHHHHHhhhCCEEEEECCCCCCcHHHHHHHHHHhcCCccCCceeEEecCCCcccCcCCHHHHHHHhCcCH
Confidence 99999999999999999999999999999889999999999999875322468999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcchhhhhccC
Q 004968 700 HHIAATALSLLGRTREALLLMC 721 (721)
Q Consensus 700 ~~I~~~i~~~l~~~~~~~~~~~ 721 (721)
+.|+++|+++++.++..+++|+
T Consensus 656 e~I~~~i~~~l~~~~~~~~~~~ 677 (677)
T PLN02582 656 SHIAATVLNVLGQTREALQIMS 677 (677)
T ss_pred HHHHHHHHHHHhcccccccccC
Confidence 9999999999966566777764
|
|
| >PLN02234 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-132 Score=1131.42 Aligned_cols=607 Identities=56% Similarity=0.940 Sum_probs=553.6
Q ss_pred cccccCCCC-----CCcccCcceeecccccCCCCCcccCCCCCccccccCCCccccCCCCHHHHHHHHHHHHHHHHHhHh
Q 004968 41 SRINLCPSS-----SSITSSKLVTVSRICALPDIDDFFWDKEPTPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVS 115 (721)
Q Consensus 41 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~p~~~~~~~~~~l~~la~eiR~~~~~~~~ 115 (721)
+-||-||+- |+-.|.|--+| |.++.++.++|++++|++|+|++||+|.|||+|+.+||++||+|+|++++++++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~i~~p~~~k~l~~~~L~~la~eiR~~ii~~~~ 100 (641)
T PLN02234 22 SYINRNPSLKYLKPSSMSSTKYSKV-RATTFSEKGEYYSNRPPTPLLDTINHPMHMKNLSIKELKVLSDELRSDVIFNVS 100 (641)
T ss_pred hhhccCCccceecccccccccccee-EEEccCCcccccCCCCCCchhhhcCCHHHHhhCCHHHHHHHHHHHHHHHHHHHh
Confidence 455666541 22233334444 777767777999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCc
Q 004968 116 KTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGC 195 (721)
Q Consensus 116 ~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G 195 (721)
+++||+++|||+|||++|||++|+.|+|+||||+|||+|+||++|||+++|.++||.++++|||++.|++||.|++||+|
T Consensus 101 ~~~GHlgssLs~vEl~~aL~~vf~~p~DriI~s~GHqaya~~~ltgr~~~l~t~r~~ggl~G~p~~~es~~d~~~tGslg 180 (641)
T PLN02234 101 KTGGHLGSNLGVVELTVALHYIFNTPHDKILWDVGHQSYPHKILTGRRGKMKTIRQTNGLSGYTKRRESEHDSFGTGHSS 180 (641)
T ss_pred hcCCCccccchHHHHHHHHHHhcCCCCCeEEEecchhHHHHHHHHhhhhhhcccccCCCcCCCCCCCCCCCcEECCCchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCcc-CCCCcchhhhhhh
Q 004968 196 NSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIE-ESPKTSINALSST 274 (721)
Q Consensus 196 ~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~-~~~~~~~g~l~~~ 274 (721)
+|||+|+|||+|+++++.+++|||++|||++++|++|||||+|++.+.|||+|+|||+++|+||.+ +++.+++|+++++
T Consensus 181 ~glS~a~GmA~a~~l~g~~~~v~~viGDGel~eG~~wEAl~~a~~~~~nlivIlddN~~~~~~~~q~~g~~~~v~~l~~~ 260 (641)
T PLN02234 181 TTLSAGLGMAVGRDLKGMNNSVVSVIGDGAMTAGQAYEAMNNAGYLHSNMIVILNDNKQVSLPTANLDGPTQPVGALSCA 260 (641)
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEccchhhhHHHHHHHHHHhhhCCCEEEEEECCCCCcccccccCCCCCCcccHHHH
Confidence 999999999999999999999999999999999999999999998889999999999998899866 7899999999999
Q ss_pred hhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhc
Q 004968 275 LSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL 354 (721)
Q Consensus 275 l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~ 354 (721)
|+++++++.|.+ ....++||+|||+|+|++||||+++|.++|+++++.
T Consensus 261 l~~l~~~~~~~~--------------------------------~~~~~~fe~fG~~~~g~vDGHd~~~l~~al~~~k~~ 308 (641)
T PLN02234 261 LSRLQSNCGMIR--------------------------------ETSSTLFEELGFHYVGPVDGHNIDDLVSILETLKST 308 (641)
T ss_pred HHHhhccccccc--------------------------------CCHHHHHHHcCCEEEeeECCCCHHHHHHHHHHHHhc
Confidence 999998876621 011468999999999999999999999999999875
Q ss_pred CCCCCEEEEEEEeccCCCcccccccccccccccCCC--CCCCCCC--CCcccHHHHHHHHHHHHHHcCCCeEEEecCCCC
Q 004968 355 GSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGASD--SNSLPFG--NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEM 430 (721)
Q Consensus 355 ~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~~f--~~g~~~~--~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~ 430 (721)
+.++|++||++|+||+||+++|+ .+.+||++.+| ++|++.+ ....+|+++|+++|.+++++||+|+++++||++
T Consensus 309 ~~~~P~vI~~~T~KGkGv~~~E~--~~~~~H~~~~~~~~~g~~~~~~~~~~sy~~af~~aL~e~a~~D~~Iv~l~adm~g 386 (641)
T PLN02234 309 KTIGPVLIHVVTEKGRGYPYAER--ADDKYHGVLKFDPETGKQFKNISKTQSYTSCFVEALIAEAEADKDIVAIHAAMGG 386 (641)
T ss_pred CCCCCEEEEEEEecCCCcchhhc--CCcccCCCCCCCccccccccCCCCCCCHHHHHHHHHHHHHHHCcCEEEEECCCCC
Confidence 33589999999999999999997 67899999999 7787765 334799999999999999999999999999999
Q ss_pred ccChHHHHHhCCCcEeeccccHHHHHHHHHHHHhCCCeeEEEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCC
Q 004968 431 DLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDG 510 (721)
Q Consensus 431 ~~~l~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG 510 (721)
+++++.|+++||+||||+|||||+||++|+|||++|+|||+++|++|++||||||+|++|++++||+|+++++|++|.||
T Consensus 387 gt~~~~f~~~fPdR~fdvGIAEq~~Vg~AaGLA~~G~rPvv~~fs~Fl~RA~DQI~~dva~~~lpV~~v~~~aG~~g~dG 466 (641)
T PLN02234 387 GTMLNLFESRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCTIYSSFMQRAYDQVVHDVDLQKLPVRFAIDRAGLMGADG 466 (641)
T ss_pred CcchHHHHHHccccccCCCcCHHHHHHHHHHHHHCCCeEEEEehHHHHHHHHHHHHHHHhhcCCCEEEEEeCCccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEecCCCcccccCCC-CCCcceecCceEEEEeCCc
Q 004968 511 PTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPRGAIVRTDLPG-YRGIPIEIGKGKVLVEGKD 589 (721)
Q Consensus 511 ~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~p~-~~~~~~~~gk~~vl~eG~d 589 (721)
+|||+.+|++++|++|||+|++|+|+.|++.++++|+..+++|++||++|+......+|. .+.+++++||++++++|+|
T Consensus 467 ~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~a~~~~~~Pv~ir~~R~~~~~~~~~~~~~~~~~~iGk~~vlreG~d 546 (641)
T PLN02234 467 PTHCGAFDVTFMACLPNMIVMAPSDEAELFNMVATAAAIDDRPSCFRYHRGNGIGVSLPPGNKGVPLQIGRGRILRDGER 546 (641)
T ss_pred ccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCCCEEEEeecccccccccCCCCccccccCceEEEEEeCCC
Confidence 999999999999999999999999999999999998876779999999998764333332 2235678999999999999
Q ss_pred EEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEcCCCCCChHHHHHHHHHhcCCCCC
Q 004968 590 VALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDS 669 (721)
Q Consensus 590 v~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~ 669 (721)
++||+||++++.|++|+++|+++||+++|||+|||+|||++++++++++++.|||+||+..||||++|++++.+++++|.
T Consensus 547 vtIva~G~~v~~Al~AA~~L~~~GI~v~VId~rsikPlD~~~i~sl~k~~~~vVt~Ee~~~GG~Gs~Va~~l~e~~~~~~ 626 (641)
T PLN02234 547 VALLGYGSAVQRCLEAASMLSERGLKITVADARFCKPLDVALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDG 626 (641)
T ss_pred EEEEEecHHHHHHHHHHHHHHhcCCCEEEEecCCcCCCCHHHHHHHHHhCCEEEEECCCCCCcHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999999998877
Q ss_pred CCceEEEecCCccccCCC
Q 004968 670 GVKWRPIVLPDNYIEHAS 687 (721)
Q Consensus 670 ~~~~~~~g~~d~f~~~g~ 687 (721)
+.++.+ .|+..|+
T Consensus 627 ~~~~~~-----~~~~~~~ 639 (641)
T PLN02234 627 KLKVYR-----TWITNGS 639 (641)
T ss_pred CceEEE-----EEeecCc
Confidence 777664 4555443
|
|
| >TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-126 Score=1100.43 Aligned_cols=611 Identities=44% Similarity=0.693 Sum_probs=570.7
Q ss_pred cccCCCccccCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHHhC
Q 004968 82 LDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTG 161 (721)
Q Consensus 82 l~~i~~p~~~~~~~~~~l~~la~eiR~~~~~~~~~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltG 161 (721)
|++|++|+|||+|+.+||+++|.+||+++++++++++||++++||+||+++|||++|+.|+|+||||+|||+|+|+++||
T Consensus 1 ~~~i~~p~dl~~l~~~~l~~la~~iR~~~i~~~~~~~GH~g~~ls~vel~~aL~~~~~~~rDr~i~s~GH~~Y~~~~~~G 80 (617)
T TIGR00204 1 LSLINSPQELRLLSIDELEKLCDELRRYLLESVSASGGHLASGLGTVELTVALHYVFNTPKDQFIWDVGHQAYPHKLLTG 80 (617)
T ss_pred CCCCCCHHHHhhCCHHHHHHHHHHHHHHHHHHHhccCCCcCcchhHHHHHHHHHhhCCCCCCcEEEecchHHHHHHHHhC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhc
Q 004968 162 RRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYL 241 (721)
Q Consensus 162 r~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~ 241 (721)
|.++|.++|++|+++|||++.||++|.|++||+|+++|+|+|+|+|.++++++.+|+|++|||++++|++|||||+|+.+
T Consensus 81 ~~~~l~~~r~~g~l~g~p~~~e~~~d~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~~eG~~~Ea~~~a~~~ 160 (617)
T TIGR00204 81 RREKFSTLRQKKGLHGFPKRSESEYDVFSAGHSSTSISAGLGIAVAAEKKGADRKTVCVIGDGAITAGMAFEALNHAGDL 160 (617)
T ss_pred cHHHhcchhhcCCcCCCCcCCCCCCCccCCCchHhHHHHHHHHHHHHHhhCCCCEEEEEECCcccccccHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCc
Q 004968 242 DSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQG 321 (721)
Q Consensus 242 ~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 321 (721)
++|+++|||||+++ ++++++.++.+|++++.++.|..++...+.+.+..+.....+.+++++.+|.++.+
T Consensus 161 ~l~~i~ii~~N~~~--------i~~~~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~-- 230 (617)
T TIGR00204 161 KTDMIVILNDNEMS--------ISENVGALSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEESMKGLVVP-- 230 (617)
T ss_pred CCCEEEEEECCCcc--------cCCCchHHHHHHHHhhccchHHHHHHHHHHHHhcCcchhHHHHHHHHHhhhhccCc--
Confidence 99999999999984 67789999999999999999999999988888766532333778889999998877
Q ss_pred cceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccccCCC--CCCCCCC--
Q 004968 322 STLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGASD--SNSLPFG-- 397 (721)
Q Consensus 322 ~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~~f--~~g~~~~-- 397 (721)
.++||+|||+|++++||||+++|.++|+++++ .++|++||++|.||+||+++|+ ++.+||++.+| ++|....
T Consensus 231 ~~~f~~~G~~~~~~vDGhd~~~l~~al~~ak~--~~~P~~i~~~T~KGkG~~~~e~--~~~~~H~~~~~~~~~~~~~~~~ 306 (617)
T TIGR00204 231 GTFFEELGFNYIGPVDGHDLLELIETLKNAKK--LKGPVFLHIQTKKGKGYKPAEK--DPIGWHGVGPFDLSTGCLPKSK 306 (617)
T ss_pred cchHHHcCCcEEcccCCCCHHHHHHHHHHHhc--CCCCEEEEEEecCCCCCchhhc--ChhhccCCCCCChhhCCcCCCC
Confidence 58999999999999999999999999999997 4789999999999999999997 67789999988 5554432
Q ss_pred CCcccHHHHHHHHHHHHHHcCCCeEEEecCCCCccChHHHHHhCCCcEeeccccHHHHHHHHHHHHhCCCeeEEEecHhh
Q 004968 398 NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAF 477 (721)
Q Consensus 398 ~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~tys~F 477 (721)
....+|+++|+++|.+++++|++|+++++||.+++++++|+++||+||||+|||||+||++|+|||++|++||+++|++|
T Consensus 307 ~~~~~~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~~~~f~~~fP~R~~d~GIaEq~~vg~AaGlA~~G~~Pvv~~~a~F 386 (617)
T TIGR00204 307 SALPSYSKIFSDTLCELAKKDNKIVGITPAMPEGSGLDKFSRKFPDRYFDVAIAEQHAVTFAAGMAIEGYKPFVAIYSTF 386 (617)
T ss_pred CCCccHHHHHHHHHHHHHhhCcCEEEEECCccCCcChHHHHHHCccccccCCccHHHHHHHHHHHHHCCCEEEEEecHHH
Confidence 23468999999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEE
Q 004968 478 LQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFR 557 (721)
Q Consensus 478 l~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir 557 (721)
++|+||||+|++|++++||+++++++|++|.||+|||+.+|+++|+++|||+|++|+|+.|++.++++|++..++|+|||
T Consensus 387 l~ra~dQi~~~~a~~~lpV~i~~~~~G~~g~dG~tH~~~~dia~lr~iPgl~V~~Psd~~e~~~~l~~a~~~~~~Pv~ir 466 (617)
T TIGR00204 387 LQRAYDQVVHDVCIQKLPVLFAIDRAGIVGADGETHQGAFDISYLRCIPNMVIMAPSDENELRQMLYTGYHYDDGPIAVR 466 (617)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEECCCcCCCCCcccccchHHHHHhcCCCcEEEeeCCHHHHHHHHHHHHhCCCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987556999999
Q ss_pred ecCCCcccccCCCCCCcceecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhc
Q 004968 558 YPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQ 637 (721)
Q Consensus 558 ~~r~~~~~~~~p~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~ 637 (721)
++|+.......+. +.+.+++||++++++|+|++||+||.|++.|++|++.|+++||+++|||++||+|||++++.++++
T Consensus 467 ~~r~~~~~~~~~~-~~~~~~~Gk~~vlr~G~dvtIva~G~~v~~al~Aa~~L~~~gi~~~VId~~~lkPlD~e~i~~~~~ 545 (617)
T TIGR00204 467 YPRGNAVGVELTP-EPEKLPIGKSEVLRKGEKILILGFGTLVPEALEVAESLNEKGIEATVVDARFVKPLDEELILEIAA 545 (617)
T ss_pred EccCCcCCcccCC-ccccccCCceEEEEcCCCEEEEEcCHHHHHHHHHHHHHHhcCCCEEEEecCcCCcCCHHHHHHHHh
Confidence 9998753322221 236788999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHh
Q 004968 638 NHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLL 710 (721)
Q Consensus 638 ~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l 710 (721)
++++||||||+. .||||++|++++.++++ +.+++++|+||.|+++|+++++++++|||+++|+++|++++
T Consensus 546 k~~~vvtvEE~~~~GGlGs~v~~~l~~~~~---~~~v~~ig~~d~~~~~g~~~~L~~~~Gl~~~~I~~~i~~~~ 616 (617)
T TIGR00204 546 SHEKLVTVEENAIMGGAGSAVLEFLMDQNK---LVPVKRLGIPDFFIPHGTQEEVLAELGLDTAGMEAKILAWL 616 (617)
T ss_pred hcCeEEEEECCCCccChHHHHHHHHHhcCC---CCCeEEEeCCCcCcCCCCHHHHHHHHCcCHHHHHHHHHHhh
Confidence 999999999998 79999999999999873 46899999999999999999999999999999999999875
|
DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP). |
| >PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-125 Score=1091.20 Aligned_cols=625 Identities=50% Similarity=0.780 Sum_probs=581.9
Q ss_pred CCCccccccCCCccccCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHH
Q 004968 76 KEPTPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYA 155 (721)
Q Consensus 76 ~~~~~~l~~i~~p~~~~~~~~~~l~~la~eiR~~~~~~~~~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~ 155 (721)
.|.+++|++|++|.|||+|+.++|+++|++||.++++++++.+||+|++||+||++++||++|+.|+|+||||+|||+|+
T Consensus 3 ~~~~~~l~~i~~p~dl~~l~~~~l~~~a~~iR~~ii~~~~~~~GH~g~~ls~vel~~aL~~~~~~prDr~i~s~GH~~Y~ 82 (641)
T PRK12571 3 RPKTPLLDRIKGPADLRALSDAELEQLADELRAEVISAVSETGGHLGSSLGVVELTVALHAVFNTPKDKLVWDVGHQCYP 82 (641)
T ss_pred CCCCChhhhcCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCCcCCCchHHHHHHHHHHhcCCCCCcEEEECchHHHH
Confidence 45567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred HHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHH
Q 004968 156 HKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAM 235 (721)
Q Consensus 156 h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Eal 235 (721)
|++|+||.++|.++|++++++|||++.|+++|.++.||.+++++.|+|+|+|.++.+++++|||++|||++++|++||++
T Consensus 83 ~~~l~g~~~~l~~~r~~~~l~g~p~~~e~~~~~~~~g~~~gslg~a~G~A~a~~~~~~~~~v~~v~GDG~~~eG~~~Eal 162 (641)
T PRK12571 83 HKILTGRRDRFRTLRQKGGLSGFTKRSESEYDPFGAAHSSTSISAALGFAKARALGQPDGDVVAVIGDGSLTAGMAYEAL 162 (641)
T ss_pred HHHHhCCHHHHhhhhhCCCcCCCCCCCcCCCCCcccCCCcChHHHHHHHHHHHHHhCCCCeEEEEEeCchhhcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhc
Q 004968 236 SNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARG 315 (721)
Q Consensus 236 n~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~ 315 (721)
++|+.+++|+++|+|||+++ +++++++++++|+++..++.|+++|+..+.+++.++.++....+++++.++.
T Consensus 163 ~~a~~~~~~li~I~dnN~~~--------i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (641)
T PRK12571 163 NNAGAADRRLIVILNDNEMS--------IAPPVGALAAYLSTLRSSDPFARLRAIAKGVEERLPGPLRDGARRARELVTG 234 (641)
T ss_pred HHHHHhCCCEEEEEECCCee--------ecCCccHHHHHHHHHhcCcchHHHHHHHHHHHhhcchhHHHHHHHHHHhhhh
Confidence 99999999999999999985 6778999999999999999999999999999999988888888999999999
Q ss_pred ccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccccCCC--CCC
Q 004968 316 MIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGASD--SNS 393 (721)
Q Consensus 316 ~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~~f--~~g 393 (721)
++.+ ..+||+|||+|+++|||||+++|.++|+++++. .++|++||++|+||+||+++|+ ++.+|||.++| .++
T Consensus 235 ~~~~--~~~f~a~G~~~~~~vdGhd~~~l~~al~~ak~~-~~~P~~I~~~T~kGkG~~~~e~--~~~~~Hg~~~f~~~~~ 309 (641)
T PRK12571 235 MIGG--GTLFEELGFTYVGPIDGHDMEALLSVLRAARAR-ADGPVLVHVVTEKGRGYAPAEA--DEDKYHAVGKFDVVTG 309 (641)
T ss_pred ccch--hhHHHHcCCEEECccCCCCHHHHHHHHHHHHhC-CCCCEEEEEEecCccCcchhhc--CCCcccCCCCcCCCCC
Confidence 8765 579999999999999999999999999999873 3789999999999999999997 67899999999 556
Q ss_pred CCCC--CCcccHHHHHHHHHHHHHHcCCCeEEEecCCCCccChHHHHHhCCCcEeeccccHHHHHHHHHHHHhCCCeeEE
Q 004968 394 LPFG--NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFC 471 (721)
Q Consensus 394 ~~~~--~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~G~~p~~ 471 (721)
++.+ ...++|+++|+++|.+++++||+|+++++||.+++++..|+++||+||||+||+||+|+++|+|||+.|++||+
T Consensus 310 ~~~~~~~~~~~~~~~f~~~L~~la~~d~~iv~isadl~~~~~~~~f~~~~p~R~id~GIaE~~mvg~AaGlA~~G~~P~v 389 (641)
T PRK12571 310 LQKKSAPSAPSYTSVFGEELTKEAAEDSDIVAITAAMPLGTGLDKLQKRFPNRVFDVGIAEQHAVTFAAGLAAAGLKPFC 389 (641)
T ss_pred cccCCCccchhHHHHHHHHHHHHHhhCCCEEEEeCCccCCCChHHHHHhCCCcccccCccHHHHHHHHHHHHHCCCEEEE
Confidence 5433 23468999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCC
Q 004968 472 IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDD 551 (721)
Q Consensus 472 ~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~ 551 (721)
++|++|++||+|||++++|++++||+++++++|++|+||+|||+.+|+++||++||++|++|+|+.|++.++++|++..+
T Consensus 390 ~~f~~Fl~ra~dQI~~~~a~~~lpv~~v~~~~G~~g~dG~THq~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~ 469 (641)
T PRK12571 390 AVYSTFLQRGYDQLLHDVALQNLPVRFVLDRAGLVGADGATHAGAFDLAFLTNLPNMTVMAPRDEAELRHMLRTAAAHDD 469 (641)
T ss_pred EehHHHHHHHHHHHHHHHhhcCCCeEEEEECCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999998999999999999999999999999999999999999999987558
Q ss_pred CCEEEEecCCCcccccCCCCCCcceecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHH
Q 004968 552 RPVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKL 631 (721)
Q Consensus 552 ~P~~ir~~r~~~~~~~~p~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~ 631 (721)
+|+|||++|+......+|.. .+.+++||+.++++|+|++||+||+++..|++|++.|+++||+++|||+++|+|||+++
T Consensus 470 ~P~~ir~~r~~~~~~~~~~~-~~~~~~gk~~vlr~G~ditIva~G~~v~~aleAa~~L~~~Gi~v~VId~~~lkPlD~~~ 548 (641)
T PRK12571 470 GPIAVRFPRGEGVGVEIPAE-GTILGIGKGRVPREGPDVAILSVGAHLHECLDAADLLEAEGISVTVADPRFVKPLDEAL 548 (641)
T ss_pred CcEEEEEecCcCCccccCCC-CccccCceeEEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEcCcCCCcCHHH
Confidence 99999999987543333322 35678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHh
Q 004968 632 VRELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLL 710 (721)
Q Consensus 632 i~~l~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l 710 (721)
+.++.+++ .++|+||+. .||||++|++++.++++.+.+.+++++|+||.|+++|+.+++++++|||+++|+++|++++
T Consensus 549 i~sv~k~~-~vvvveE~~~~gG~g~~v~~~l~~~~~~~l~~~v~~ig~~d~f~~~g~~~el~~~~gl~~~~I~~~i~~~l 627 (641)
T PRK12571 549 TDLLVRHH-IVVIVEEQGAMGGFGAHVLHHLADTGLLDGGLKLRTLGLPDRFIDHASREEMYAEAGLTAPDIAAAVTGAL 627 (641)
T ss_pred HHHHhhhC-CEEEEECCCCCCCHHHHHHHHHHhcCccccCCCeEEEecCCcCCCCCCHHHHHHHhCcCHHHHHHHHHHHH
Confidence 98888776 566677765 7999999999999998754467899999999999999999999999999999999999999
Q ss_pred hcchh
Q 004968 711 GRTRE 715 (721)
Q Consensus 711 ~~~~~ 715 (721)
+..++
T Consensus 628 ~~~~~ 632 (641)
T PRK12571 628 ARLSG 632 (641)
T ss_pred HhccC
Confidence 76554
|
|
| >PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-121 Score=1047.80 Aligned_cols=574 Identities=31% Similarity=0.517 Sum_probs=528.0
Q ss_pred ccccCCCccccCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHHh
Q 004968 81 ILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILT 160 (721)
Q Consensus 81 ~l~~i~~p~~~~~~~~~~l~~la~eiR~~~~~~~~~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~lt 160 (721)
||++|++|.|||+|+.+||++||+|||.++++.+++++||++|++|+||+++|||++||.|+|+||||+|||+|+|+++|
T Consensus 2 ~l~~~~~p~d~~~l~~~~l~~l~~~ir~~~~~~~~~~~Gh~~~~lg~vel~~al~~~f~~~~D~ii~d~ghr~~~~~l~~ 81 (581)
T PRK12315 2 YLEKINSPADLKKLSLDELEQLASEIRTALLEKDSAHGGHVGPNLGVVELTIALHYVFNSPKDKIVWDVSHQSYPHKMLT 81 (581)
T ss_pred chhhcCCHHHHhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcCcchhHHHHHHHHHhhcCCCCCcEEEecCCchHHHHHHc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhh
Q 004968 161 GRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGY 240 (721)
Q Consensus 161 Gr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~ 240 (721)
||+.++.+.|++|+++||+++.||+||.|++||+|+++|+|+|+|+|+++++.+++|||++|||++++|++|||||+|+.
T Consensus 82 G~~~~~~~~~~~g~~~G~~~~~~s~~~~~~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EAln~A~~ 161 (581)
T PRK12315 82 GRKEAFLDPDHYDDVTGYTNPEESEHDFFTVGHTSTSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGLNNAAE 161 (581)
T ss_pred CCccchhhHHHcCCCCCCCCCCCCCCCCcCCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCC
Q 004968 241 LDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQ 320 (721)
Q Consensus 241 ~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 320 (721)
|++|+|+||+||+|+ +++++++++.++.+++.++. .+
T Consensus 162 ~k~~li~Ii~dN~~s--------i~~~~~~~~~~l~~~~~~~~-----------------------------------~~ 198 (581)
T PRK12315 162 LKSNLIIIVNDNQMS--------IAENHGGLYKNLKELRDTNG-----------------------------------QS 198 (581)
T ss_pred hCCCEEEEEECCCCc--------CCCCCchhhhhhhhhhhccc-----------------------------------cc
Confidence 999999999999984 56778877666654332110 01
Q ss_pred ccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccccCCC--CCCCCCC-
Q 004968 321 GSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGASD--SNSLPFG- 397 (721)
Q Consensus 321 ~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~~f--~~g~~~~- 397 (721)
...+|++|||++++++||||++++.++++++++ .++|++||++|.||+||+++++ ++.+||+..+| .+|+..+
T Consensus 199 ~~~~~~a~G~~~~~v~DG~D~~~l~~a~~~a~~--~~gP~~i~~~T~kG~G~~~~~~--~~~~~h~~~~f~~~~~~~~~~ 274 (581)
T PRK12315 199 ENNLFKAMGLDYRYVEDGNDIESLIEAFKEVKD--IDHPIVLHIHTLKGKGYQPAEE--NKEAFHWHMPFDLETGQSKVP 274 (581)
T ss_pred HHHHHHhcCCeEEEeeCCCCHHHHHHHHHHHHh--CCCCEEEEEEeecCCCCChhhc--CHHhcCCCCCCCcccCcccCC
Confidence 135789999999988899999999999999987 5899999999999999988766 68899999888 5554333
Q ss_pred CCcccHHHHHHHHHHHHHHcCCCeEEEecCCCCccChHHHHHhCCCcEeeccccHHHHHHHHHHHHhCCCeeEEEecHhh
Q 004968 398 NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAF 477 (721)
Q Consensus 398 ~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~tys~F 477 (721)
....+|+++|+++|.+++++|++|+++++||+++++++.|+++||+||||+|||||+|+++|+|||++|++||+.+|++|
T Consensus 275 ~~~~~~~~~~~~~l~~~~~~d~~i~~i~~~~~~~~~~~~f~~~fP~R~id~GIaEq~~v~~AaGlA~~G~~Pvv~~fs~F 354 (581)
T PRK12315 275 ASGESYSSVTLDYLLKKIKEGKPVVAINAAIPGVFGLKEFRKKYPDQYVDVGIAEQESVAFASGIAANGARPVIFVNSTF 354 (581)
T ss_pred CCCcCHHHHHHHHHHHHhccCCCEEEEeCccccccCcHHHHHhccccccCCCchHHHHHHHHHHHHHCcCeEEEEeeHHH
Confidence 23568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEE
Q 004968 478 LQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFR 557 (721)
Q Consensus 478 l~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir 557 (721)
++||||||+|++|++++||+|+++++|+++ ||+|||+++|+++||++||++|++|+|+.|++.++++|++..++|+|||
T Consensus 355 l~ra~dQi~~d~a~~~lpv~~~~~~~g~~~-dG~TH~~~~Dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~gP~~ir 433 (581)
T PRK12315 355 LQRAYDQLSHDLAINNNPAVMIVFGGSISG-NDVTHLGIFDIPMISNIPNLVYLAPTTKEELIAMLEWALTQHEHPVAIR 433 (581)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEECCcccC-CCccccccHHHHHHhcCCCCEEEecCCHHHHHHHHHHHHhCCCCcEEEE
Confidence 999999999999999999999999999987 9999999999999999999999999999999999999987557999999
Q ss_pred ecCCCcccccCCCCCCcceecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhC-CCCeEEeecCccccccHHHHHHHh
Q 004968 558 YPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKL-GIDVTVADARFCKPLDIKLVRELC 636 (721)
Q Consensus 558 ~~r~~~~~~~~p~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~-Gi~v~VId~~~l~PlD~e~i~~l~ 636 (721)
++|+...... .. ...+..+|++++++|+|++||++|++++.|++|++.|+++ ||+++|||++|++|||++++.++.
T Consensus 434 ~~r~~~~~~~--~~-~~~~~~~k~~v~~~g~dvtiia~G~~v~~Al~Aa~~L~~~~gi~~~Vid~~~ikPlD~~~i~~~~ 510 (581)
T PRK12315 434 VPEHGVESGP--TV-DTDYSTLKYEVTKAGEKVAILALGDFYELGEKVAKKLKEELGIDATLINPKFITGLDEELLEKLK 510 (581)
T ss_pred EcCCccCCCC--CC-ccCcccceEEEEecCCCEEEEEEchHHHHHHHHHHHHhhhcCCCEEEEecCcCCCCCHHHHHHHH
Confidence 9998754321 11 1234456899999999999999999999999999999998 999999999999999999999999
Q ss_pred ccCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHh
Q 004968 637 QNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLL 710 (721)
Q Consensus 637 ~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l 710 (721)
++++.|||+||+. .||||++|++++.+++ .+++++|+||+|+++|+++++++++|||+++|+++|++++
T Consensus 511 ~~~~~vvtvEe~~~~GG~gs~v~~~l~~~~-----~~~~~~gi~d~f~~~g~~~~l~~~~Gl~~~~I~~~i~~~l 580 (581)
T PRK12315 511 EDHELVVTLEDGILDGGFGEKIARYYGNSD-----MKVLNYGAKKEFNDRVPVEELYKRNHLTPEQIVEDILSVL 580 (581)
T ss_pred hhCCEEEEEcCCCcCCCHHHHHHHHHHcCC-----CeEEEecCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHh
Confidence 9999999999998 6999999999998764 4789999999999999999999999999999999999875
|
|
| >PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-111 Score=973.39 Aligned_cols=573 Identities=51% Similarity=0.789 Sum_probs=521.2
Q ss_pred CCCccccccCCCccccCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHH
Q 004968 76 KEPTPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYA 155 (721)
Q Consensus 76 ~~~~~~l~~i~~p~~~~~~~~~~l~~la~eiR~~~~~~~~~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~ 155 (721)
+|++|+|++|++|.|||+|+.++|+++|+++|..+++++.+.+||+|+++|++|++++||++|+.++|+||+|+||++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~iR~~~~~~~~~~~gH~g~~ls~~~i~~~L~~~~~~~rDr~ils~GH~~y~ 80 (580)
T PRK05444 1 IPKYPLLDTINSPADLKKLSEEELPQLADEIREFLIDVVSKTGGHLGSNLGVVELTVALHYVFDTPKDRIIWDVGHQAYP 80 (580)
T ss_pred CCCCchhhccCCHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccHHHHHHHHHHhcCCCCccEEEeccHHHHH
Confidence 47889999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred HHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHc-CCCCeEEEEEcCCCcccchHHHH
Q 004968 156 HKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIK-GKRECIVTVISNGTTMAGQAYEA 234 (721)
Q Consensus 156 h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~-g~~~~VvaviGDGal~~G~~~Ea 234 (721)
|++++|+.+++.++|++++++|||++.+++++.+++|++|+++|+|+|+|+|.+++ +++++|||++|||++++|++|||
T Consensus 81 ~~~~~g~~~~l~~~~~~~s~~g~p~~~~~~~~~~~~G~lG~gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~eG~~~Ea 160 (580)
T PRK05444 81 HKILTGRRDRFDTLRQKGGLSGFPKRSESEYDTFGAGHSSTSISAALGMAKARDLKGGEDRKVVAVIGDGALTGGMAFEA 160 (580)
T ss_pred HHHHhCcHHHhcCcccCCCCCCCCCCCCCCCeeECCChHHHHHHHHHHHHHHHHhhCCCCCeEEEEEcccccccCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998 58899999999999999999999
Q ss_pred HHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhh
Q 004968 235 MSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYAR 314 (721)
Q Consensus 235 ln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~ 314 (721)
+++|+++++|+++|+|||+++ ++.+++.+..++..
T Consensus 161 l~~A~~~~~nli~IvdnN~~~--------i~~~~~~~~~~~~~------------------------------------- 195 (580)
T PRK05444 161 LNNAGDLKSDLIVILNDNEMS--------ISPNVGALSNYLAR------------------------------------- 195 (580)
T ss_pred HHHHHhhCCCEEEEEECCCCc--------CCCcchhhhhhhcc-------------------------------------
Confidence 999999999999999999984 23333322100000
Q ss_pred cccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccccCCC--CC
Q 004968 315 GMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGASD--SN 392 (721)
Q Consensus 315 ~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~~f--~~ 392 (721)
.+...+|+++||++++++||||++++.++++++++ .++|++|+++|.||+||+++|+ ++.+||+.++| ..
T Consensus 196 ----~~~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~--~~~P~lI~~~T~kg~G~~~~e~--~~~~~h~~~~~~~~~ 267 (580)
T PRK05444 196 ----LRSSTLFEELGFNYIGPIDGHDLDALIETLKNAKD--LKGPVLLHVVTKKGKGYAPAEA--DPIKYHGVGKFDPET 267 (580)
T ss_pred ----ccHHHHHHHcCCCeeeeeCCCCHHHHHHHHHHHHh--CCCCEEEEEEecCCcCCChhhc--CccccCCCCCCCccc
Confidence 00134789999999977899999999999999987 4799999999999999999986 57789999888 33
Q ss_pred CCCCC---CCcccHHHHHHHHHHHHHHcCCCeEEEecCCCCccChHHHHHhCCCcEeeccccHHHHHHHHHHHHhCCCee
Q 004968 393 SLPFG---NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKP 469 (721)
Q Consensus 393 g~~~~---~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~G~~p 469 (721)
++..+ ....+|+++|+++|.+++++||+++++++|+.+++++..|+++||+||||+||+||+|+++|+|||++|++|
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~vv~~~adl~~~~~~~~f~~~~p~R~i~~GIaE~~mvg~A~GlA~~G~~p 347 (580)
T PRK05444 268 GEQPKSSKPGKPSYTKVFGETLCELAEKDPKIVAITAAMPEGTGLVKFSKRFPDRYFDVGIAEQHAVTFAAGLATEGLKP 347 (580)
T ss_pred CCccccCCCCcccHHHHHHHHHHHHHhhCCCEEEEECCcCCCCCHHHHHHHhhhhccCCChHHHHHHHHHHHHHHCCCee
Confidence 33221 122689999999999999999999999999988888988999999999999999999999999999999999
Q ss_pred EEEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHh
Q 004968 470 FCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI 549 (721)
Q Consensus 470 ~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~ 549 (721)
|+++|++|++|++|||++++|++++||+++++++|++|.||+|||+++|+++||++||++|++|+|+.|++.++++|++.
T Consensus 348 ~~~~f~~F~~ra~dQi~~~~a~~~~pv~~v~~~~G~~g~dG~tH~~~edia~lr~iP~l~V~~Psd~~e~~~~l~~a~~~ 427 (580)
T PRK05444 348 VVAIYSTFLQRAYDQVIHDVALQNLPVTFAIDRAGLVGADGPTHQGAFDLSYLRCIPNMVIMAPSDENELRQMLYTALAY 427 (580)
T ss_pred EEEeeHHHHHHHHHHHHHHhhhcCCCEEEEEeCCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999988999999999999999999999999999999999999999975
Q ss_pred CCCCEEEEecCCCcccccCCCCCCcceecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccH
Q 004968 550 DDRPVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDI 629 (721)
Q Consensus 550 ~~~P~~ir~~r~~~~~~~~p~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~ 629 (721)
.++|+|||++|+.....+.+ +.+.+++||++++++|+|++||++|++++.|++|++.|+ +++|||++|++|||+
T Consensus 428 ~~~P~~ir~~r~~~~~~~~~--~~~~~~~Gk~~vl~~G~dvtIia~G~~v~~al~Aa~~L~----~~~VId~~~i~p~D~ 501 (580)
T PRK05444 428 DDGPIAIRYPRGNGVGVELP--ELEPLPIGKGEVLREGEDVAILAFGTMLAEALKAAERLA----SATVVDARFVKPLDE 501 (580)
T ss_pred CCCcEEEEecCCCCCCCCCC--CcccccCCceEEEEcCCCEEEEEccHHHHHHHHHHHHhC----CCEEEEeCcCCccCH
Confidence 68999999999885432212 246788999999999999999999999999999999996 899999999999999
Q ss_pred HHHHHHhccCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHH
Q 004968 630 KLVRELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALS 708 (721)
Q Consensus 630 e~i~~l~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~ 708 (721)
+++.+++++++++||+||+. .||||++|++++.++++ +.+++++|++|.|+++|+++++++++|||+++|+++|++
T Consensus 502 ~~i~~~~~~~~~vv~vEe~~~~gG~g~~va~~l~~~~~---~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~ 578 (580)
T PRK05444 502 ELLLELAAKHDLVVTVEEGAIMGGFGSAVLEFLADHGL---DVPVLNLGLPDEFIDHGSREELLAELGLDAEGIARRILE 578 (580)
T ss_pred HHHHHHHhcCCeEEEEECCCCCCCHHHHHHHHHHhhcC---CCCEEEEecCCcCCCCCCHHHHHHHHCcCHHHHHHHHHh
Confidence 99999999999999999998 59999999999999875 458899999999999999999999999999999999987
Q ss_pred Hh
Q 004968 709 LL 710 (721)
Q Consensus 709 ~l 710 (721)
++
T Consensus 579 ~~ 580 (580)
T PRK05444 579 LL 580 (580)
T ss_pred hC
Confidence 53
|
|
| >KOG0523 consensus Transketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-98 Score=811.94 Aligned_cols=601 Identities=29% Similarity=0.396 Sum_probs=500.3
Q ss_pred ccccccCCCccccCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCCCcccHHHHHHHHhcc---cC--CC----CcEEEecC
Q 004968 79 TPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHV---FH--AP----VDKILWDV 149 (721)
Q Consensus 79 ~~~l~~i~~p~~~~~~~~~~l~~la~eiR~~~~~~~~~~~Gh~~sslg~vel~~aL~~v---f~--~p----~D~iv~d~ 149 (721)
+|.+++++.|..+++|++.+++.++++. +||+++++|.++....|+.. |+ .| +|+||||+
T Consensus 2 ~~~~~~~~~~~~~n~lri~si~~~~~a~-----------sghp~s~~s~A~~~~vlf~~~mr~~~~~p~~~n~Drfvls~ 70 (632)
T KOG0523|consen 2 TPSQDSQILKDAVNNLRILSIDATSAAK-----------SGHPGSPLSLAPIMHVLFFEVMRYNPADPYWFNRDRFVLSN 70 (632)
T ss_pred CchhhhhhhHHHhhhhhhhhHHHHHhhh-----------cCCCCCccccchhhhhhhhhheecccCCcCCCCCceEEEec
Confidence 4567777777777777777776655554 49999999998888888753 32 12 69999999
Q ss_pred CchH---HHHHHHhC--chhhhHHHHhhCC-CCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCC-CCeEEEEEc
Q 004968 150 GEQT---YAHKILTG--RRSLIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGK-RECIVTVIS 222 (721)
Q Consensus 150 GH~~---y~h~~ltG--r~~~~~~~r~~gg-l~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~-~~~VvaviG 222 (721)
||+| |+|++|+| +.+++.++||.++ +.|||. .+++++.++|||+|++|+.|+|||+++|+.++ +++|||++|
T Consensus 71 GHa~~llYa~~~l~G~~~~edl~~~Rq~~s~t~ghp~-~~~~~v~v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlG 149 (632)
T KOG0523|consen 71 GHACPLLYAHWHLAGYDREEDLKNFRQIGSDTPGHPE-PELPGVEVATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLG 149 (632)
T ss_pred cccchHHHHHHHHhccCcHHHHHHHHhhCCCCCCCCc-ccCCCceeccCCccchHHHHHHHHHHHHhhccccceEEEEEc
Confidence 9999 99999999 7999999999998 567776 57999999999999999999999999999999 999999999
Q ss_pred CCCcccchHHHHHHHhhhcCC-CEEEEEECCCCCcCCCcc-CCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCc
Q 004968 223 NGTTMAGQAYEAMSNAGYLDS-NMIVILNDSRHSLHPKIE-ESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGR 300 (721)
Q Consensus 223 DGal~~G~~~Ealn~A~~~~~-plivIv~dN~~~s~~t~~-~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~ 300 (721)
||+++||++||||++|+++++ |||+|.+||+. |+++.+ .+.+.+++.+ +.-..++......+.
T Consensus 150 DG~~~eG~~~EA~s~Ag~l~ldnLVai~D~n~i-s~~g~t~~~~~~dV~~~--------------r~ea~g~~~~~V~~~ 214 (632)
T KOG0523|consen 150 DGCLTEGSVWEAMSLAGHLKLDNLVAIYDNNKI-SIDGATSLGFDEDVYQL--------------RFEAFGWNVIIVDGG 214 (632)
T ss_pred CchhccchHHHHHhhhhhcccCCEEEEEccccc-cCCCCCcccccccHHHH--------------HHHHhCceEEEEcCc
Confidence 999999999999999999995 55555555554 666655 3455555432 222223333444566
Q ss_pred chHHHHHHHHHH--hhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccc
Q 004968 301 GMHEWAAKVDEY--ARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKS 378 (721)
Q Consensus 301 ~~~~~~~~~~~~--~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~ 378 (721)
++.++.+++.++ ++++.+.-..+.|+++|+.+++++++|......+.++++++...- |+++++.+.++++||..+..
T Consensus 215 d~d~i~ka~~~a~~~k~kpt~i~~~t~~g~G~~~ig~~~~Hg~pl~~~~~~~~k~~~~~-P~~~~~v~~~~~~~p~~~~~ 293 (632)
T KOG0523|consen 215 DVDEIRKAIGKAKSVKGKPTAIKATTFIGRGSPYIGSESVHGAPLGEDDVERVKSIKGL-PVLIFVVPEKVKLYPEKPVE 293 (632)
T ss_pred CHHHHHHHHhhhhhccCCceeeeeeeeeecCccccccccccCCcchhhHHHHHHhhcCC-cceeEEeccccccCCCcccc
Confidence 777887777554 477766667889999999999999999988888778888776334 99999999999999987752
Q ss_pred cccccccccCCC--CCCCCCC--CCcccHHHHHHHHHHHHHHcCCCeEEEecCCCCccChHHHHHhCCCcEeeccccHHH
Q 004968 379 EAIEKQQEGASD--SNSLPFG--NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQH 454 (721)
Q Consensus 379 ~~~~~~Hg~~~f--~~g~~~~--~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~fp~R~~d~GIaE~~ 454 (721)
......|++..+ .+..+.+ .+...++++|.++|.++++.+|+++++++||..|+.++-|+++||+|||++||+||+
T Consensus 294 ~~~~~~~~i~~~~~~~~p~yk~~Dk~~Atrk~~~~aL~~l~~~~~~vI~~~ad~~~st~td~~~~~~p~R~i~~giaEq~ 373 (632)
T KOG0523|consen 294 DARAISVRIPKIWEKSLPTYKVGDKAVATRKAFGEALAALAEADPRVIGGSADLKNSTLTDFFPKRFPERFIECGIAEQN 373 (632)
T ss_pred cccccccCcCccccccCCccccCChhhhHHHHHHHHHHHHhhcCcCeEEEecccCCCchhhhccccCccceEEEeeehhh
Confidence 233567777766 4454444 344789999999999999999999999999999998988999999999999999999
Q ss_pred HHHHHHHHHhCCC-eeEEEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEe
Q 004968 455 AVTFSAGLACGGL-KPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMA 532 (721)
Q Consensus 455 ~v~~AaGlA~~G~-~p~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~ 532 (721)
|+++|+|+|..|. +|||.||+.|++||+||++++ ++.+.+++++.++.|+ +|+||||||++||+++||++||++||+
T Consensus 374 mv~ia~G~a~~g~~~Pf~~tf~~F~trA~dqvr~~-a~s~~~v~~v~th~~i~~GeDGPth~~iedlA~frsiPn~~v~~ 452 (632)
T KOG0523|consen 374 MVGIANGIACRGRTIPFCGTFAAFFTRAFDQVRMG-ALSQANVIYVATHDSIGLGEDGPTHQPIEDLAMFRSIPNMIVFR 452 (632)
T ss_pred hHHhhhchhcCCCccchhHHHHHHHHHhhhheeeh-hhccCCcEEEEEeccccccCCCcccccHHHHHHHHhCCCceEEe
Confidence 9999999999997 999999999999999999766 7888888888888877 899999999999999999999999999
Q ss_pred eCCHHHHHHHHHHHHHhCCCCEEEEecCCCcccccCCCCCCcceecCceE-EEEeCC-cEEEEEechhhHHHHHHHHHHH
Q 004968 533 PSDEDELVDMVATVASIDDRPVCFRYPRGAIVRTDLPGYRGIPIEIGKGK-VLVEGK-DVALLGYGAMVQNCLKARALLS 610 (721)
Q Consensus 533 Psd~~E~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~gk~~-vl~eG~-dv~Iva~Gs~v~~al~Aa~~L~ 610 (721)
|+|..|+..++..|++..+.|.+++++|++.+..+ ....+++||+. +++++. ||+||++|+++++|++||+.|+
T Consensus 453 PaD~~et~~av~~Aa~~~~~p~i~~~~r~~~~~~~----~~~~~~igkg~~vl~~~~~dV~LiG~Gs~v~~cl~AA~~L~ 528 (632)
T KOG0523|consen 453 PADGNETENAVATAANTKGTPSIRTLSRQNLPIYN----NTEIEEIGKGKYVLQEVEPDVILIGTGSEVQECLEAAELLS 528 (632)
T ss_pred cCchHHHHHHHHHHHhcCCCeeEEEecCccccccC----CCchhhhccccEEEecCCCCEEEEeccHHHHHHHHHHHHHH
Confidence 99999999999999988888999999999865432 13457788886 788887 9999999999999999999999
Q ss_pred hCCCCeEEeecCccccccHHHHHHHhccCCeEEE-EcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCH
Q 004968 611 KLGIDVTVADARFCKPLDIKLVRELCQNHTFLIT-VEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASP 688 (721)
Q Consensus 611 ~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvv-vEe~~-~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~ 688 (721)
++||+++|+|++++||||..+|+++.+.++..++ +|+++ .||++.. +++..+.++. ..+..++ +|+|+.+|++
T Consensus 529 ~~gi~vrVvd~~~~kplD~~li~~~~q~~e~ri~v~ed~~~~gsi~~~---~~a~~g~~~~-~~~~~~~-~~~~~~sG~p 603 (632)
T KOG0523|consen 529 EDGIKVRVVDPFTWKPLDVALIRSLAQSHEYRISVLEDHVPAGSIEVA---VTAAWGKYPG-ILVPSLG-VDTFGRSGPP 603 (632)
T ss_pred hcCceEEEecccceeecchHHhhhhhcccceeEEEccCCCCCcchhhe---eeehhcccCC-ccceeec-cccCCcCCCC
Confidence 9999999999999999999999999988875554 55555 3455543 3433343332 3356677 4999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHhhcchhhh
Q 004968 689 TQQLALAGLTGHHIAATALSLLGRTREAL 717 (721)
Q Consensus 689 ~~l~~~~gl~~~~I~~~i~~~l~~~~~~~ 717 (721)
.+|++.|||++++|++++++++++.|+++
T Consensus 604 ~ell~~fGit~~~Ia~~a~~~~~~~~~~~ 632 (632)
T KOG0523|consen 604 PELLKMFGITARHIAAAALSLIGKYREAL 632 (632)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhhccCC
Confidence 99999999999999999999999998875
|
|
| >PTZ00089 transketolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-94 Score=841.85 Aligned_cols=536 Identities=19% Similarity=0.230 Sum_probs=455.4
Q ss_pred HHHHHHHHHHHHHHHHhHh-cCCCCCCCcccHHHHHHHHhc-c--cCC------CCcEEEecCCchH---HHHHHHhCch
Q 004968 97 KELKQLAVEIRSELSSIVS-KTEKSLKSSLAAVELTVALHH-V--FHA------PVDKILWDVGEQT---YAHKILTGRR 163 (721)
Q Consensus 97 ~~l~~la~eiR~~~~~~~~-~~~Gh~~sslg~vel~~aL~~-v--f~~------p~D~iv~d~GH~~---y~h~~ltGr~ 163 (721)
...+++|+++|..+++++. .++||+|+++|++|++++||+ + |++ ++|+||||+||++ |+|++++|++
T Consensus 4 ~~~~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~ei~~~L~~~~l~~~~~~~~~~~rDr~vls~GH~~~~lYa~l~l~G~~ 83 (661)
T PTZ00089 4 AIDEKCANEIRCLSADLVQKANSGHPGAPMGMAPIAHILWSEVMKYNPKDPRWINRDRFVLSNGHASALLYSMLHLTGYD 83 (661)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHhhcCCCcCCCCCCCCEEEEeCcchHHHHHHHHHHcCCC
Confidence 3457789999999999996 588999999999999999996 5 553 5899999999999 9999999984
Q ss_pred ---hhhHHHHhhCC-CCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCC----------CCeEEEEEcCCCcccc
Q 004968 164 ---SLIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGK----------RECIVTVISNGTTMAG 229 (721)
Q Consensus 164 ---~~~~~~r~~gg-l~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~----------~~~VvaviGDGal~~G 229 (721)
+++.++|+.++ ++|||++.+++++.+++||+|+++|.|+|+|+|+|+++. +++|||++|||++++|
T Consensus 84 ~~~~~l~~fr~~~s~~~ghp~~~~~~gv~~~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG 163 (661)
T PTZ00089 84 LSMEDLKNFRQLGSRTPGHPERHITPGVEVTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQEG 163 (661)
T ss_pred CCHHHHHhcCCCCCCCCCCCCCCCCCCcccCCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchhhH
Confidence 66788888876 679999989999999999999999999999999998764 7899999999999999
Q ss_pred hHHHHHHHhhhcCC-CEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHH
Q 004968 230 QAYEAMSNAGYLDS-NMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAK 308 (721)
Q Consensus 230 ~~~Ealn~A~~~~~-plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~ 308 (721)
++|||+|+|+.+++ |||+|+|||+++ +++++... . .
T Consensus 164 ~~~EAl~~A~~~~L~nLi~i~d~N~~~--------i~~~~~~~--------~------------------~--------- 200 (661)
T PTZ00089 164 VSQEALSLAGHLGLEKLIVLYDDNKIT--------IDGNTDLS--------F------------------T--------- 200 (661)
T ss_pred HHHHHHHHHHHhCCCCEEEEEECCCcc--------cccCcccc--------c------------------C---------
Confidence 99999999999995 699999999984 33333200 0 0
Q ss_pred HHHHhhcccCCCccceeeeeCceEEeccCCC-CHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCccccccccccccccc
Q 004968 309 VDEYARGMIGPQGSTLFEELGLYYIGPVDGH-NIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEG 387 (721)
Q Consensus 309 ~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGh-d~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~ 387 (721)
.+...+|++|||+|+.++||| |+++|.++|+++++. .++|++||++|.||+|+ ..| +..+|||.
T Consensus 201 ----------~~~~~~f~a~G~~~i~v~dG~~D~~~l~~a~~~a~~~-~~~P~~I~~~T~kG~G~-~~e---~~~~~H~~ 265 (661)
T PTZ00089 201 ----------EDVEKKYEAYGWHVIEVDNGNTDFDGLRKAIEEAKKS-KGKPKLIIVKTTIGYGS-SKA---GTEKVHGA 265 (661)
T ss_pred ----------ccHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhc-CCCcEEEEEEeeecCCC-CcC---CCCCccCC
Confidence 011347899999999777999 999999999999874 36899999999999994 444 57899998
Q ss_pred CC-------------------CCC--------------CCCC--------------------------------------
Q 004968 388 AS-------------------DSN--------------SLPF-------------------------------------- 396 (721)
Q Consensus 388 ~~-------------------f~~--------------g~~~-------------------------------------- 396 (721)
++ |.- ++..
T Consensus 266 ~~~~~~~~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 345 (661)
T PTZ00089 266 PLGDEDIAQVKELFGLDPEKKFHVSEEVRQFFEQHVEKKKENYEAWKKRFAKYTAAFPKEAQAIERRFKGELPPGWEKKL 345 (661)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHCHHHHHHHHHHhccCCchhhhhhh
Confidence 52 410 1000
Q ss_pred ---C--CCcccHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh-----HHHHHhCC-CcEeeccccHHHHHHHHHHHHh-
Q 004968 397 ---G--NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL-----QLFQEKFP-ERYFDVGMAEQHAVTFSAGLAC- 464 (721)
Q Consensus 397 ---~--~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l-----~~f~~~fp-~R~~d~GIaE~~~v~~AaGlA~- 464 (721)
. .+..+.+++++++|.++++.+|+++..++|+.+++.+ ..|+++|| +||||+|||||+|+++|+|||+
T Consensus 346 ~~~~~~~~~~a~R~~~g~~L~~la~~~~~~~~~saDl~~s~~~~~~~~~~f~~~~P~~rfi~~GIaEq~mv~~AaGlA~~ 425 (661)
T PTZ00089 346 PKYTTNDKAIATRKASENVLNPLFQILPELIGGSADLTPSNLTRPKEANDFTKASPEGRYIRFGVREHAMCAIMNGIAAH 425 (661)
T ss_pred hhhcccCcchHHHHHHHHHHHHHHhhCCCeEEEECCCCcccCcCCcccccccccCCCCCeeeeeecHHHHHHHHHHHHHc
Confidence 0 0112467788888999999999999999999887765 37999999 8999999999999999999999
Q ss_pred CCCeeEEEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHH
Q 004968 465 GGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMV 543 (721)
Q Consensus 465 ~G~~p~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l 543 (721)
.|++||++||++|++|++||| +++|++++||+|++++.|+ +|+||+|||+++|+++||.+|||+|++|+|+.|+..++
T Consensus 426 ~G~~P~~~tf~~Fl~Ra~dqi-r~~al~~lpV~~v~thdg~~~g~DG~THq~iedia~lR~iPn~~V~~PaD~~E~~~~l 504 (661)
T PTZ00089 426 GGFIPFGATFLNFYGYALGAV-RLAALSHHPVIYVATHDSIGLGEDGPTHQPVETLALLRATPNLLVIRPADGTETSGAY 504 (661)
T ss_pred CCCeEEEEehHHHHHHHHHHH-HHHHhcCCCeEEEEeCCceecCCCCCCcccHHHHHHHhcCCCcEEEecCCHHHHHHHH
Confidence 789999999999999999996 7779999999999988887 89999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCEEEEecCCCcccccCCCCCCcceecCceEEEEeC---CcEEEEEechhhHHHHHHHHHHHhCCCCeEEee
Q 004968 544 ATVASIDDRPVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEG---KDVALLGYGAMVQNCLKARALLSKLGIDVTVAD 620 (721)
Q Consensus 544 ~~a~~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~gk~~vl~eG---~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId 620 (721)
++|+...++|+|||++|+..+.. +. ....+..++++++++| +|++||++|+++.+|++|++.|++ ||+++|||
T Consensus 505 ~~al~~~~gP~~irl~R~~~~~~--~~-~~~~~~~~g~~vl~~~~~~~dv~iia~G~~v~~Al~Aa~~L~~-Gi~~~Vv~ 580 (661)
T PTZ00089 505 ALALANAKTPTILCLSRQNTPPL--PG-SSIEGVLKGAYIVVDFTNSPQLILVASGSEVSLCVEAAKALSK-ELNVRVVS 580 (661)
T ss_pred HHHHHcCCCCEEEEecCCCCCCc--CC-CccccccCceEEEeccCCCCCEEEEeeCHHHHHHHHHHHHHhc-CCCeEEEe
Confidence 99986678999999999975432 21 1223345667899975 799999999999999999999999 99999999
Q ss_pred cCccccccHHHHHHH---hc-cCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcC
Q 004968 621 ARFCKPLDIKLVREL---CQ-NHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAG 696 (721)
Q Consensus 621 ~~~l~PlD~e~i~~l---~~-~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~g 696 (721)
++|++|||++.+... .. ++..++++|++...||.. . ..+++|++| |+.+|+.+++++++|
T Consensus 581 ~~~ikp~d~~~~~~~~~v~~e~~~~~vtiE~~~~~g~~~----------~-----~~~~igv~~-Fg~sg~~~~l~~~~G 644 (661)
T PTZ00089 581 MPCWELFDQQSEEYQQSVLPSGGVPVLSVEAYVSFGWEK----------Y-----SHVHVGISG-FGASAPANALYKHFG 644 (661)
T ss_pred CCCccHHHHHHHHHHHHhcCCCCCceEeHHhhHHHHHHh----------c-----CCeEEECCC-ccccCCHHHHHHHhC
Confidence 999999999987532 44 455689999997655431 0 114799988 999999999999999
Q ss_pred CCHHHHHHHHHHHhh
Q 004968 697 LTGHHIAATALSLLG 711 (721)
Q Consensus 697 l~~~~I~~~i~~~l~ 711 (721)
||+++|+++|++++.
T Consensus 645 l~~e~I~~~i~~~l~ 659 (661)
T PTZ00089 645 FTVENVVEKARALAA 659 (661)
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999999998764
|
|
| >PLN02790 transketolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-94 Score=835.38 Aligned_cols=531 Identities=20% Similarity=0.243 Sum_probs=454.1
Q ss_pred HHHHHHHhHh-cCCCCCCCcccHHHHHHHHhcc---cCC------CCcEEEecCCchH---HHHHHHhCch----hhhHH
Q 004968 106 IRSELSSIVS-KTEKSLKSSLAAVELTVALHHV---FHA------PVDKILWDVGEQT---YAHKILTGRR----SLIHT 168 (721)
Q Consensus 106 iR~~~~~~~~-~~~Gh~~sslg~vel~~aL~~v---f~~------p~D~iv~d~GH~~---y~h~~ltGr~----~~~~~ 168 (721)
||..+++++. .++||+|+++|++|++++||+. ||+ ++|+||||+||++ |+|++++|+. +++.+
T Consensus 1 iR~~~~~~~~~a~~GH~g~~ls~~ei~~~L~~~~~~~~~~~p~~~~rDrfvls~GH~~~~lYa~l~~~G~~~~~~~~l~~ 80 (654)
T PLN02790 1 IRFLAIDAVNKANSGHPGLPMGCAPMGHVLYDEVMKYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQMEDLKQ 80 (654)
T ss_pred ChHHHHHHHHhcCCCcCCchhhHHHHHHHHHHhhcccCCCCCCCCCCCEEEEeCcchHHHHHHHHHHcCCCCCCHHHHHH
Confidence 5899999996 5889999999999999999976 663 5899999999999 9999999996 78999
Q ss_pred HHhhCCC-CCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHc-----CC-----CCeEEEEEcCCCcccchHHHHHHH
Q 004968 169 LRKKDGI-SGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIK-----GK-----RECIVTVISNGTTMAGQAYEAMSN 237 (721)
Q Consensus 169 ~r~~ggl-~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~-----g~-----~~~VvaviGDGal~~G~~~Ealn~ 237 (721)
+||+++. .|||++.++|++.+++||+|+++|.|+|||+|.|+. ++ +++|||++|||++++|++|||+|+
T Consensus 81 ~r~~~s~~~ghp~~~~~pgi~~~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~ 160 (654)
T PLN02790 81 FRQWGSRTPGHPENFETPGIEVTTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASL 160 (654)
T ss_pred hccCCCCCCCCCCCCCCCCccccCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHH
Confidence 9999984 599999999999999999999999999999999953 43 689999999999999999999999
Q ss_pred hhhcCC-CEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcc
Q 004968 238 AGYLDS-NMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM 316 (721)
Q Consensus 238 A~~~~~-plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 316 (721)
|+.+++ |||+|+|||+++ ++++++... ...
T Consensus 161 A~~~~L~nli~i~d~N~~~--------i~~~~~~~~-----------------------------~~~------------ 191 (654)
T PLN02790 161 AGHWGLGKLIVLYDDNHIS--------IDGDTEIAF-----------------------------TED------------ 191 (654)
T ss_pred HHHhCCCCEEEEEecCCcc--------ccCCccccc-----------------------------chh------------
Confidence 999996 599999999984 344443110 000
Q ss_pred cCCCccceeeeeCceEEeccCC-CCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccccC-------
Q 004968 317 IGPQGSTLFEELGLYYIGPVDG-HNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGA------- 388 (721)
Q Consensus 317 ~~~~~~~l~ea~G~~~~g~vdG-hd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~------- 388 (721)
...+|++|||+++++.|| ||+++|.++++++++. .++|++||++|.||+|+++.| +..+|||.+
T Consensus 192 ----~~~~f~a~G~~~~~vdgg~hd~~~l~~a~~~a~~~-~~~P~lI~~~T~kG~G~~~~e---~~~~~H~~~~~~~~~~ 263 (654)
T PLN02790 192 ----VDKRYEALGWHTIWVKNGNTDYDEIRAAIKEAKAV-TDKPTLIKVTTTIGYGSPNKA---NSYSVHGAALGEKEVD 263 (654)
T ss_pred ----HHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhc-CCCeEEEEEEEeecCCCcccc---CCCCcCCCCCCHHHHH
Confidence 124689999999965555 8999999999999863 478999999999999999876 488999986
Q ss_pred -----------CC--C-CC-----------CCC-------------------------------------------CCCc
Q 004968 389 -----------SD--S-NS-----------LPF-------------------------------------------GNYS 400 (721)
Q Consensus 389 -----------~f--~-~g-----------~~~-------------------------------------------~~~~ 400 (721)
+| . +. +.. +.+.
T Consensus 264 ~~~~~l~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (654)
T PLN02790 264 ATRKNLGWPYEPFHVPEDVKSHWSKHTKEGAALEAEWNAKFAEYKKKYPEEAAELKSLISGELPSGWEKALPTFTPEDPA 343 (654)
T ss_pred HHHHHhCCCCCCCcCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhCHHHHHHHHHHhccCCchhhhhhhhhhcccCcc
Confidence 45 1 11 000 0001
Q ss_pred ccHHHHHHHHHHHHHHcCCCeEEEecCCCCccC-----hHHHHHh-CCCcEeeccccHHHHHHHHHHHHhC--CCeeEEE
Q 004968 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLS-----LQLFQEK-FPERYFDVGMAEQHAVTFSAGLACG--GLKPFCI 472 (721)
Q Consensus 401 ~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~-----l~~f~~~-fp~R~~d~GIaE~~~v~~AaGlA~~--G~~p~~~ 472 (721)
...+++++++|..+++.+|++++.+||+.+++. +..|+++ ||+||||+|||||+|+++|+|||+. |++||++
T Consensus 344 ~a~R~~~~~~l~~i~~~~p~iv~gsaDl~~s~~t~~~~~~~f~~~~~p~Rfi~~GIaEq~mv~~AaGlA~~G~G~~P~~~ 423 (654)
T PLN02790 344 DATRNLSQKCLNALAKVLPGLIGGSADLASSNMTLLKDFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSSGLIPYCA 423 (654)
T ss_pred hHHHHHHHHHHHHHHhhCCCeEEEECCCCcccccccccchhhhhcCCCCCeEEeeechHHHHHHHHHHHhcCCCcEEEEE
Confidence 245778888999999999999999999987754 6889998 5999999999999999999999996 6999999
Q ss_pred ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCC
Q 004968 473 IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDD 551 (721)
Q Consensus 473 tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~ 551 (721)
||+.|+.|+++|| +++|++++||+|++++.|+ +|+||+|||+++|+++||.+||++|++|+|++|+..++++|+...+
T Consensus 424 tf~~F~~~~~~~i-r~~al~~lpV~~v~thdg~~~G~DG~THq~iedla~lR~iPnl~V~~PaD~~E~~~~l~~al~~~~ 502 (654)
T PLN02790 424 TFFVFTDYMRAAM-RLSALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLASLRAMPNILMLRPADGNETAGAYKVAVTNRK 502 (654)
T ss_pred ecHHHHHHHHHHH-HHHHhcCCCeEEEEECCceeecCCCCCcccHHHHHHhcCCCCcEEEeCCCHHHHHHHHHHHHHcCC
Confidence 9999999999998 6679999999999988877 7999999999999999999999999999999999999999987668
Q ss_pred CCEEEEecCCCcccccCCCCCCcceecCceEEEEeC-----CcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCcccc
Q 004968 552 RPVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEG-----KDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKP 626 (721)
Q Consensus 552 ~P~~ir~~r~~~~~~~~p~~~~~~~~~gk~~vl~eG-----~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~P 626 (721)
+|+|||++|+..+.. +......++.|+ ++++++ +|++||++|+++.+|++|++.|+++||+++|||++|++|
T Consensus 503 gP~~irl~R~~~~~~--~~~~~~~~~~G~-~vl~~~~~~~~~dv~iia~G~~v~~Al~Aa~~L~~~gi~~~VV~~~~ikp 579 (654)
T PLN02790 503 RPTVLALSRQKVPNL--PGTSIEGVEKGG-YVISDNSSGNKPDLILIGTGSELEIAAKAAKELRKEGKKVRVVSMVCWEL 579 (654)
T ss_pred CCEEEEecCCCCCCC--CCCcccccccCc-EEEEeCCCCCCCCEEEEEcCHHHHHHHHHHHHHHhcCCceEEEecCccch
Confidence 999999999875432 211124567786 677774 799999999999999999999999999999999999999
Q ss_pred ccHHHHH---HHh-ccCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHH
Q 004968 627 LDIKLVR---ELC-QNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHI 702 (721)
Q Consensus 627 lD~e~i~---~l~-~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I 702 (721)
||++... +++ ++++.+|++|++..+||++. +. .+.+++|+ |+|+.+|+.+++++++|||+++|
T Consensus 580 ld~~~~~y~~~~~~~~~~~vvtiE~~~~~G~~~~----~~--------~~~~~igv-d~Fg~sg~~~~l~~~~Glt~e~I 646 (654)
T PLN02790 580 FEEQSDEYKESVLPSSVTARVSVEAGSTFGWEKY----VG--------SKGKVIGV-DRFGASAPAGILYKEFGFTVENV 646 (654)
T ss_pred hhhhHHHHHHhhhccccceEEEecCccchhHHHh----cC--------CCceEEEe-CCCcCcCCHHHHHHHhCCCHHHH
Confidence 9998854 566 67778999999998888652 11 23467898 99999999999999999999999
Q ss_pred HHHHHHHh
Q 004968 703 AATALSLL 710 (721)
Q Consensus 703 ~~~i~~~l 710 (721)
+++|++++
T Consensus 647 ~~~i~~~~ 654 (654)
T PLN02790 647 VAAAKSLL 654 (654)
T ss_pred HHHHHHhC
Confidence 99998754
|
|
| >PRK12753 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-93 Score=828.58 Aligned_cols=538 Identities=19% Similarity=0.210 Sum_probs=453.9
Q ss_pred HHHHHHHHHHHHHHhHhc-CCCCCCCcccHHHHHHHHhcccC---------CCCcEEEecCCchH---HHHHHHhCch--
Q 004968 99 LKQLAVEIRSELSSIVSK-TEKSLKSSLAAVELTVALHHVFH---------APVDKILWDVGEQT---YAHKILTGRR-- 163 (721)
Q Consensus 99 l~~la~eiR~~~~~~~~~-~~Gh~~sslg~vel~~aL~~vf~---------~p~D~iv~d~GH~~---y~h~~ltGr~-- 163 (721)
.+++|++||..+++++.+ ++||+|+++|+++++.+||+.|. .++|+||+|+||++ |++++++|+.
T Consensus 4 ~~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~~i~~~Ly~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~~~G~~~~ 83 (663)
T PRK12753 4 RKDLANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWRDFLKHNPTNPTWYDRDRFILSNGHASMLLYSLLHLTGYDLP 83 (663)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHhCCCccCCCCCCCCcEEEecccHHHHHHHHHHHhCCCCC
Confidence 367799999999999996 78999999999999999997532 23799999999999 9999999984
Q ss_pred -hhhHHHHhhCC-CCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCC----------CCeEEEEEcCCCcccchH
Q 004968 164 -SLIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGK----------RECIVTVISNGTTMAGQA 231 (721)
Q Consensus 164 -~~~~~~r~~gg-l~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~----------~~~VvaviGDGal~~G~~ 231 (721)
+++.++|++++ +.|||.....+...+++|++|+++|.|+|||+|.|+++. +++|||++|||++++|++
T Consensus 84 ~e~L~~fr~~~s~~~ghp~~~~~pgve~~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~ 163 (663)
T PRK12753 84 IEELKNFRQLHSKTPGHPEIGYTPGVETTTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGIS 163 (663)
T ss_pred HHHHHHhccCCCCCCCCCCCCCCCCcccCCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCccccHHH
Confidence 78999999997 789998877788888999999999999999999998763 689999999999999999
Q ss_pred HHHHHHhhhcCC-CEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHH
Q 004968 232 YEAMSNAGYLDS-NMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVD 310 (721)
Q Consensus 232 ~Ealn~A~~~~~-plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~ 310 (721)
|||+|+|+.+++ |||+|++||+++ ++.++... +.
T Consensus 164 ~EA~~~A~~~kL~nLi~ivd~N~~~--------i~~~~~~~---~~---------------------------------- 198 (663)
T PRK12753 164 HEVCSLAGTLGLGKLIGFYDHNGIS--------IDGETEGW---FT---------------------------------- 198 (663)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCc--------CCCChhhh---cC----------------------------------
Confidence 999999999997 599999999984 33333311 00
Q ss_pred HHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccccC--
Q 004968 311 EYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGA-- 388 (721)
Q Consensus 311 ~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~-- 388 (721)
.+...+|++|||+++.++||||+++|.++|+++++. .++|++|+++|.||+|++++|+ ..+|||.+
T Consensus 199 --------~~~~~~f~a~Gw~~~~~vDGhD~~~i~~a~~~a~~~-~~~P~~I~~~T~kG~G~~~~e~---~~~~H~~~l~ 266 (663)
T PRK12753 199 --------DDTAKRFEAYHWHVIHEIDGHDPQAIKEAILEAQSV-KDKPSLIICRTIIGFGSPNKAG---KEESHGAPLG 266 (663)
T ss_pred --------hhHHHHHHHcCCeEEceeCCCCHHHHHHHHHHHHHC-CCCeEEEEEEEeecCCCCcccC---CCCccCCCCC
Confidence 001347899999999778999999999999999863 4789999999999999999874 78999942
Q ss_pred ----------------CC-------------CCCCC------------------------------CC------------
Q 004968 389 ----------------SD-------------SNSLP------------------------------FG------------ 397 (721)
Q Consensus 389 ----------------~f-------------~~g~~------------------------------~~------------ 397 (721)
+| ++|++ .+
T Consensus 267 ~~~~~~~~~~l~~~~~~F~v~~~v~~~~~~~~~~~~~~~~w~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~ 346 (663)
T PRK12753 267 EEEVALTRQKLGWHHPPFEIPKEIYAAWDAREKGEKAEQAWNEKFAAYKKAYPELAAEFTRRMSGGLPKDWEKKTQKYIN 346 (663)
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHhhhhchHHHHHHHHHHHHHHHHCHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 34 11211 00
Q ss_pred -----CCcccHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh-----HHHHHhCCCcEeeccccHHHHHHHHHHHHh-CC
Q 004968 398 -----NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL-----QLFQEKFPERYFDVGMAEQHAVTFSAGLAC-GG 466 (721)
Q Consensus 398 -----~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l-----~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~-~G 466 (721)
.+....+++++++|.++++.+|++++++||+.+++.+ ..|.++||+||||+|||||+|+++|+|||+ .|
T Consensus 347 ~~~~~~~~~a~r~~~g~~L~~l~~~~p~lv~~sADl~~S~~~~~~~~~~f~~~~p~r~i~~GIaEq~mv~~aaGlA~~~G 426 (663)
T PRK12753 347 ELQANPAKIATRKASQNTLEAYGPLLPELLGGSADLAPSNLTIWSGSKSLKEDPAGNYIHYGVREFGMTAIANGIAHHGG 426 (663)
T ss_pred HhhccccccHHHHHHHHHHHHHHhhCCCeEEEccccccccCcccccccchhhcCCCCEEEeeecHHHHHHHHHHHHHhCC
Confidence 1123456788999999999999999999999888766 789999999999999999999999999999 78
Q ss_pred CeeEEEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 004968 467 LKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVAT 545 (721)
Q Consensus 467 ~~p~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~ 545 (721)
++||++||++|++|++|||++ .|++++||+++++++|+ +|+||+|||+++|+++||.+|||+|++|+|+.|+..++..
T Consensus 427 ~~P~~~tf~~F~~r~~~qir~-~a~~~l~V~~v~thdg~~~G~DG~THq~iedla~lR~iPn~~v~~PaD~~E~~~~~~~ 505 (663)
T PRK12753 427 FVPYTATFLMFVEYARNAARM-AALMKARQIMVYTHDSIGLGEDGPTHQPVEQLASLRLTPNFSTWRPCDQVEAAVAWKL 505 (663)
T ss_pred CeEEEEehHHHHHHHHHHHHH-HHhcCCCeEEEEeCCCcccCCCCcccccHHHHHHHhcCCCCEEEccCCHHHHHHHHHH
Confidence 999999999999999999985 49999999999999999 7999999999999999999999999999999999999999
Q ss_pred HHHhCCCCEEEEecCCCcccccCCCCC--CcceecCceEEEEeCC---cEEEEEechhhHHHHHHHHHHHhCCCCeEEee
Q 004968 546 VASIDDRPVCFRYPRGAIVRTDLPGYR--GIPIEIGKGKVLVEGK---DVALLGYGAMVQNCLKARALLSKLGIDVTVAD 620 (721)
Q Consensus 546 a~~~~~~P~~ir~~r~~~~~~~~p~~~--~~~~~~gk~~vl~eG~---dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId 620 (721)
|++..++|+|||++|++.+.. .... ...+..|+ +++++|. |++||++|+++++|++|++.|+++||+++|||
T Consensus 506 al~~~~gP~~irl~R~~~~~~--~~~~~~~~~~~~G~-~vl~~~~~~~dv~iia~Gs~v~~al~Aa~~L~~~gi~~~Vv~ 582 (663)
T PRK12753 506 AIERHNGPTALILSRQNLAQQ--ERTPEQVKNIARGG-YILKDSGGKPDLILIATGSEVEITLQAAEKLTAEGRNVRVVS 582 (663)
T ss_pred HHhcCCCCEEEEecCCCCCCC--CCcccchhhccCCc-EEEeccCCCCCEEEEEeCHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 987568999999999875432 1111 12344554 8889864 99999999999999999999999999999999
Q ss_pred cCccccccHHHH--HH-Hhcc-CCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcC
Q 004968 621 ARFCKPLDIKLV--RE-LCQN-HTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAG 696 (721)
Q Consensus 621 ~~~l~PlD~e~i--~~-l~~~-~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~g 696 (721)
++|++|||++.+ ++ ++.. ....|+||++...+ +.++. +.+.+++|+ |+|+.+|+.+++++++|
T Consensus 583 ~~~~kp~d~~~~~y~~~vl~~~~~~~vtvE~~~~~~----~~~~~--------~~~~~~iGv-d~Fg~sg~~~~l~~~~G 649 (663)
T PRK12753 583 MPSTDIFDAQDEAYRESVLPSNVTARVAVEAGIADY----WYKYV--------GLKGAIIGM-TGFGESAPADKLFPFFG 649 (663)
T ss_pred CCcCCccchhHHHHHHhhcccccceEEEEccChHHH----HHHHc--------CCCCeEEEe-CCCcCcCCHHHHHHHhC
Confidence 999999999987 22 2222 22348999984222 22221 235578998 89999999999999999
Q ss_pred CCHHHHHHHHHHHh
Q 004968 697 LTGHHIAATALSLL 710 (721)
Q Consensus 697 l~~~~I~~~i~~~l 710 (721)
||++.|++++++++
T Consensus 650 lt~~~Iv~~i~~~~ 663 (663)
T PRK12753 650 FTVENIVAKAKKLL 663 (663)
T ss_pred CCHHHHHHHHHHhC
Confidence 99999999998763
|
|
| >PRK05899 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-92 Score=819.79 Aligned_cols=541 Identities=23% Similarity=0.283 Sum_probs=467.4
Q ss_pred CCHHHHHHHHHHHHHHHHHhHh-cCCCCCCCcccHHHHHHHHhc-ccC--------CCCcEEEecCCchH---HHHHHHh
Q 004968 94 LTIKELKQLAVEIRSELSSIVS-KTEKSLKSSLAAVELTVALHH-VFH--------APVDKILWDVGEQT---YAHKILT 160 (721)
Q Consensus 94 ~~~~~l~~la~eiR~~~~~~~~-~~~Gh~~sslg~vel~~aL~~-vf~--------~p~D~iv~d~GH~~---y~h~~lt 160 (721)
|..++|+++|+++|..+++++. ..+||+|+++|++|++++||+ +|+ .++|+||+|+||++ |++++++
T Consensus 3 ~~~~~l~~~a~~iR~~~~~~~~~~~~gH~g~~ls~~~i~~~L~~~~l~~~~~~~~~~~~Dr~i~s~GH~~~~~Ya~l~~~ 82 (624)
T PRK05899 3 MDMELLQLLANAIRVLSIDAVQKANSGHPGMPMGAADIAYVLWTRFLRHDPKNPKWPNRDRFVLSAGHGSMLLYSLLHLA 82 (624)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHcCCCCccchHHHHHHHHHHHHHhhcCCCCCCCCCCCCEEEEEChhHHHHHHHHHHHc
Confidence 5778999999999999999996 578999999999999999997 543 24799999999999 9999999
Q ss_pred Cc---hhhhHHHHhhCC-CCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCC----------CCeEEEEEcCCCc
Q 004968 161 GR---RSLIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGK----------RECIVTVISNGTT 226 (721)
Q Consensus 161 Gr---~~~~~~~r~~gg-l~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~----------~~~VvaviGDGal 226 (721)
|+ ++++.++|++++ +.|||++.+++++.+++|++|+++|+|+|+|+|.++++. +++|||++|||++
T Consensus 83 G~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~~ 162 (624)
T PRK05899 83 GYDLSIDDLKNFRQLGSKTPGHPEYGHTPGVETTTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDL 162 (624)
T ss_pred CCCCCHHHHHHhcCCCCCCCCCCCCCCCCCeeeCCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcchh
Confidence 99 889999999998 699999988899989999999999999999999998887 8999999999999
Q ss_pred ccchHHHHHHHhhhcCC-CEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHH
Q 004968 227 MAGQAYEAMSNAGYLDS-NMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEW 305 (721)
Q Consensus 227 ~~G~~~Ealn~A~~~~~-plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~ 305 (721)
++|++||||++|+.+++ |+++|+|||+++ + +.++...
T Consensus 163 ~~g~~~Eal~~A~~~~L~~li~v~dnN~~~-~-------~~~~~~~---------------------------------- 200 (624)
T PRK05899 163 MEGISHEACSLAGHLKLGNLIVIYDDNRIS-I-------DGPTEGW---------------------------------- 200 (624)
T ss_pred hchHHHHHHHHHHHhCCCCEEEEEECCCCc-c-------ccccccc----------------------------------
Confidence 99999999999999996 599999999984 1 1111100
Q ss_pred HHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCccccccccccccc
Q 004968 306 AAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQ 385 (721)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~H 385 (721)
..++...+|++|||+++ .|||||+++|.++++++++ .++|++|+++|.||+|++++|+ ..+||
T Consensus 201 -----------~~~~~~~~~~a~G~~~~-~VdG~d~~~l~~al~~a~~--~~~P~vI~v~t~kg~g~~~~e~---~~~~H 263 (624)
T PRK05899 201 -----------FTEDVKKRFEAYGWHVI-EVDGHDVEAIDAAIEEAKA--STKPTLIIAKTIIGKGAPNKEG---THKVH 263 (624)
T ss_pred -----------ccccHHHHhccCCCeEE-EECCCCHHHHHHHHHHHHh--cCCCEEEEEEeEeccCCccccC---CCccc
Confidence 00112457899999998 5899999999999999987 4789999999999999999885 67899
Q ss_pred ccCCC---------CCC---CCC--C---------------C-----------CcccHHHHHHHHHHHHHHcCCCeEEEe
Q 004968 386 EGASD---------SNS---LPF--G---------------N-----------YSRTYDDCFIEALVMEAEKDKDIVVVH 425 (721)
Q Consensus 386 g~~~f---------~~g---~~~--~---------------~-----------~~~~~~~~~~~~L~~~~~~d~~iv~i~ 425 (721)
+..+. +-+ ++. + . ...+++++|+++|.+++++||++++++
T Consensus 264 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~l~~~~~~v~vl~ 343 (624)
T PRK05899 264 GAPLGAEEIAAAKKELGWDYEPFEVPEEVYAHWRKAKERGAKAEAEWNEKFAGEKVATRKASGKALNALAKALPELVGGS 343 (624)
T ss_pred CCCCCHHHHHHHHHHcCCCcccccCChHHHHHHHHhhhcCchhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCCEEEEe
Confidence 87543 000 000 0 0 112348999999999999999999999
Q ss_pred cCCCCccChHHHH------HhCCCcEeeccccHHHHHHHHHHHHhCC-CeeEEEecHhhHHHHHHHHHHHhhcCCcceEE
Q 004968 426 AGMEMDLSLQLFQ------EKFPERYFDVGMAEQHAVTFSAGLACGG-LKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRF 498 (721)
Q Consensus 426 ad~~~~~~l~~f~------~~fp~R~~d~GIaE~~~v~~AaGlA~~G-~~p~~~tys~Fl~ra~dqi~~~~a~~~lpVv~ 498 (721)
+|+++++++..|. ++||+||||+|||||+|+++|+|||+.| ++||+++|++|++|+++||++. +++++||++
T Consensus 344 ~D~~~~~~~~~~~~~~f~~~~~p~R~~d~GIaE~~~vg~A~GlA~~G~~~pv~~t~~~F~~r~~~qir~~-~~~~~pv~~ 422 (624)
T PRK05899 344 ADLAGSNNTKIKGSKDFAPEDYSGRYIHYGVREFAMAAIANGLALHGGFIPFGGTFLVFSDYARNAIRLA-ALMKLPVIY 422 (624)
T ss_pred CCCccccCcccccccccCccCCCCCeeeeChhHHHHHHHHHHHHHcCCCeEEEEEcHHHHHHHHHHHHHH-HhcCCCEEE
Confidence 9999888887666 6899999999999999999999999999 9999999999999999999875 899999999
Q ss_pred EEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEecCCCcccccCCCC-CCcce
Q 004968 499 VITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPRGAIVRTDLPGY-RGIPI 576 (721)
Q Consensus 499 v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~p~~-~~~~~ 576 (721)
+.+++|+ +|.+|+|||+.+|+++||++||++|++|+|++|++.+++++++..++|+|||++|+..+. +.+. ..+.+
T Consensus 423 v~~~~G~~~g~~G~tHq~~edia~~r~iP~~~V~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~--~~~~~~~~~~ 500 (624)
T PRK05899 423 VFTHDSIGVGEDGPTHQPVEQLASLRAIPNLTVIRPADANETAAAWKYALERKDGPSALVLTRQNLPV--LERTAQEEGV 500 (624)
T ss_pred EEECCCcCcCCCCCCcccHHHHHHHHhCCCcEEEeCCCHHHHHHHHHHHHHcCCCCEEEEEeCCCCCC--cCCccccccc
Confidence 9999998 789999999999999999999999999999999999999999754899999999976432 1111 12467
Q ss_pred ecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHH---HHHHh-ccCCeEEEEcCCCCCC
Q 004968 577 EIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKL---VRELC-QNHTFLITVEEGSIGG 652 (721)
Q Consensus 577 ~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~---i~~l~-~~~~~vvvvEe~~~gG 652 (721)
+.|+ +++++|+|++||++|+++++|++|++.|+++||+++|||++|++|||++. +...+ +.+..+|++|++..+|
T Consensus 501 ~~G~-~~l~~G~dvtiia~G~~v~~al~Aa~~L~~~gi~~~VId~~sikPlD~~e~h~~~~~lg~~~~~~v~~e~~~~~g 579 (624)
T PRK05899 501 AKGG-YVLRDDPDVILIATGSEVHLALEAADELEAEGIKVRVVSMPSTELFDEQDAAYKESVLPAAVTARVAVEAGVADG 579 (624)
T ss_pred cCCc-EEEecCCCEEEEEeCHHHHHHHHHHHHHHhcCCcEEEEECCCcchhccCcHHHHhccccccccceEEEccCCccc
Confidence 7886 88999999999999999999999999999999999999999999999983 44444 5556788889887777
Q ss_pred hHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHh
Q 004968 653 FGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLL 710 (721)
Q Consensus 653 ~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l 710 (721)
|. .++ +.+++++|++| |+++|+++++++++|||+++|+++|++++
T Consensus 580 ~~----~~~--------~~~~~~iGv~~-f~~~g~~~~l~~~~gl~~~~I~~~i~~~~ 624 (624)
T PRK05899 580 WY----KYV--------GLDGKVLGIDT-FGASAPADELFKEFGFTVENIVAAAKELL 624 (624)
T ss_pred hh----hhc--------CCCceEEECCC-CCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Confidence 72 222 23568999999 99999999999999999999999998754
|
|
| >TIGR00232 tktlase_bact transketolase, bacterial and yeast | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-88 Score=785.84 Aligned_cols=536 Identities=20% Similarity=0.240 Sum_probs=453.1
Q ss_pred HHHHHHHHHHHHhHh-cCCCCCCCcccHHHHHHHHhc-ccC----CC----CcEEEecCCchH---HHHHHHhCch---h
Q 004968 101 QLAVEIRSELSSIVS-KTEKSLKSSLAAVELTVALHH-VFH----AP----VDKILWDVGEQT---YAHKILTGRR---S 164 (721)
Q Consensus 101 ~la~eiR~~~~~~~~-~~~Gh~~sslg~vel~~aL~~-vf~----~p----~D~iv~d~GH~~---y~h~~ltGr~---~ 164 (721)
..++++|..+++++. ..+||+|+++|+++++.+||+ +++ .| +|+||+|+||.+ |+.+.+.|+. +
T Consensus 2 ~~~~~iR~~~~~~~~~a~~GH~g~~ls~a~i~~~Ly~~~l~~~p~~p~~~~rDrfvlS~GH~~~~lYa~l~~~G~~~~~e 81 (653)
T TIGR00232 2 KLANAIRHLAVDAIQKAKSGHPGAPLGAAPIAEVLWTKFLKFNPTNPKWINRDRFVLSNGHGSMLLYSLLHLTGYDLSIE 81 (653)
T ss_pred hHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCeEEEECccHHHHHHHHHHHcCCCCCHH
Confidence 468899999999998 467999999999999999995 343 22 699999999999 9999999974 6
Q ss_pred hhHHHHhhCC-CCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcC----------CCCeEEEEEcCCCcccchHHH
Q 004968 165 LIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKG----------KRECIVTVISNGTTMAGQAYE 233 (721)
Q Consensus 165 ~~~~~r~~gg-l~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g----------~~~~VvaviGDGal~~G~~~E 233 (721)
++.++|+.++ +.|||.+..++...+++|++|++++.|+|+|+|.|+++ .+++|+|++|||++++|.+||
T Consensus 82 ~L~~fr~~~s~~~ghp~~~~~~gi~~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~E 161 (653)
T TIGR00232 82 DLKQFRQLHSKTPGHPEFGHTAGVEATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYE 161 (653)
T ss_pred HHHhcccCCCCCCCCCCCCCCCCeeeCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEccccccccHHHH
Confidence 7999999996 88999987788888999999999999999999999863 378999999999999999999
Q ss_pred HHHHhhhcCCC-EEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHH
Q 004968 234 AMSNAGYLDSN-MIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEY 312 (721)
Q Consensus 234 aln~A~~~~~p-livIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~ 312 (721)
|+++|+.+++| |++|++||+++ + +.++... .
T Consensus 162 A~~~A~~~~L~nLi~ivd~N~~~-i-------~~~~~~~-------~--------------------------------- 193 (653)
T TIGR00232 162 VASLAGHLKLGKLIVLYDSNRIS-I-------DGAVDGS-------F--------------------------------- 193 (653)
T ss_pred HHHHHHHhCCCcEEEEEeCCCee-e-------ccccccc-------c---------------------------------
Confidence 99999999965 99999999984 2 2222100 0
Q ss_pred hhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccccC----
Q 004968 313 ARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGA---- 388 (721)
Q Consensus 313 ~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~---- 388 (721)
..+...+|++|||+++.+.||||++++.++++++++. .++|++|+++|.||+|++++|+ ..+|||.+
T Consensus 194 -----~~~~~~~~~a~Gw~~~~v~DG~D~~ai~~A~~~a~~~-~~~P~~I~~~T~~g~G~~~~e~---~~~~H~~~~~~~ 264 (653)
T TIGR00232 194 -----TEDVAKRFEAYGWEVLEVEDGHDLAAIDAAIEEAKAS-KDKPTLIEVTTTIGFGSPNKAG---THGVHGAPLGDE 264 (653)
T ss_pred -----CccHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHhC-CCCCEEEEEEeeecccCcccCC---CCcccCCCCCHH
Confidence 0011346899999999433999999999999999873 2489999999999999998885 77899874
Q ss_pred --------------CCC---------------CCCC--------------------------C----C------------
Q 004968 389 --------------SDS---------------NSLP--------------------------F----G------------ 397 (721)
Q Consensus 389 --------------~f~---------------~g~~--------------------------~----~------------ 397 (721)
+|. .+++ + +
T Consensus 265 ~~~~~~~~l~~~~~~f~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~ 344 (653)
T TIGR00232 265 DVKLTKKNLGWNYNPFEVPQEVYDHFQKTVKERGAKAEQEWNELFAAYKKKYPELAAEFTRRLSGELPADWDKKLPEFKA 344 (653)
T ss_pred HHHHHHHHhCCCCCCccCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHCHHHHHHHHHHHhccCchhhhhhhhhhhc
Confidence 120 0100 0 0
Q ss_pred -CCcccHHHHHHHHHHHHHHcCCCeEEEecCCCCccChHH-----HHHhCCCcEeeccccHHHHHHHHHHHHh-CCCeeE
Q 004968 398 -NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQL-----FQEKFPERYFDVGMAEQHAVTFSAGLAC-GGLKPF 470 (721)
Q Consensus 398 -~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~-----f~~~fp~R~~d~GIaE~~~v~~AaGlA~-~G~~p~ 470 (721)
....+.+++|+++|.++++.+|+++++++|+.+++++.. |.++||+||||+||+||+|+++|+|||+ .|++||
T Consensus 345 ~~~~~atR~~~g~~L~~la~~~p~iv~lsaDl~~s~~~~~~~~~~f~~~~p~rfi~~GIaEq~mv~~AaGlA~~gG~~p~ 424 (653)
T TIGR00232 345 KLQALATRKYSQNVLNAIANVLPELLGGSADLAPSNLTKWKGSGDLHENPLGNYIHYGVREFAMGAIMNGIALHGGFKPY 424 (653)
T ss_pred cCcchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCcccccccchhhcCCCCeEeecccHHHHHHHHHHHHHcCCCeEE
Confidence 011246788999999999999999999999988877654 8899999999999999999999999999 689999
Q ss_pred EEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHh
Q 004968 471 CIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI 549 (721)
Q Consensus 471 ~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~ 549 (721)
++||++|++|+++||+ +.|++++||++++++.|+ +|+||+|||+++|+++||.+||++|++|+|+.|+..++++|+..
T Consensus 425 ~~tf~~F~~r~~~~ir-~~a~~~lpV~~v~th~g~~~G~dG~THq~iedia~lr~iPn~~v~~PaD~~E~~~~~~~a~~~ 503 (653)
T TIGR00232 425 GGTFLMFVDYARPAIR-LAALMKLPVIYVYTHDSIGVGEDGPTHQPIEQLASLRAIPNLSVWRPCDGNETAAAWKYALES 503 (653)
T ss_pred EEEhHHHHHHHHHHHH-HHHhcCCCEEEEEeCCccCCCCCCcccCCHHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhc
Confidence 9999999999999985 559999999999999888 89999999999999999999999999999999999999999966
Q ss_pred CCCCEEEEecCCCcccccCCCCCCcceecCceEEE--EeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccc
Q 004968 550 DDRPVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVL--VEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPL 627 (721)
Q Consensus 550 ~~~P~~ir~~r~~~~~~~~p~~~~~~~~~gk~~vl--~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~Pl 627 (721)
.++|+|||++|++.+.. .+.....+..|+ +++ ++|+|++||++|+++.+|++|++.|+++||+++|||++|++||
T Consensus 504 ~~gP~~irl~r~~~~~~--~~~~~~~~~~G~-~vl~~~~g~dv~iia~G~~v~~al~Aa~~L~~~Gi~~~VI~~~~ikpl 580 (653)
T TIGR00232 504 QDGPTALILSRQNLPQL--EESSLEKVLKGG-YVLKDSKGPDIILIATGSEVSLAVEAAKKLAAENIKVRVVSMPSFDLF 580 (653)
T ss_pred CCCcEEEEEcCCccCCC--CcccccccCCCc-EEEEecCCCCEEEEEeChHHHHHHHHHHHHHhcCCcEEEEecccCccc
Confidence 78999999999875422 111113456665 677 6789999999999999999999999999999999999999999
Q ss_pred cHHH---HHHHhccCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHH
Q 004968 628 DIKL---VRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAA 704 (721)
Q Consensus 628 D~e~---i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~ 704 (721)
|++. +.++++++..+||+|+|+.+||. ... +...+++|+ |+|+.+|+++++++++|||+++|++
T Consensus 581 d~~~~~~~~~~~~~~~~vvtvEe~~~~g~~----~~~--------~~~~~~igv-d~fg~sg~~~~L~~~~Glt~e~I~~ 647 (653)
T TIGR00232 581 DKQDEEYRESVLPANVTRLAVEAGAADEWY----KYA--------GLVGAILGM-DSFGESAPGDKLFEEFGFTVENVVA 647 (653)
T ss_pred ccCCHHHHHHHhcccCceEEEecccHhHHH----Hhc--------CCcceEEEe-cCCcCCCCHHHHHHHhCCCHHHHHH
Confidence 7654 88888888899999999876663 111 111257898 9999999999999999999999999
Q ss_pred HHHHHh
Q 004968 705 TALSLL 710 (721)
Q Consensus 705 ~i~~~l 710 (721)
+|++++
T Consensus 648 ~i~~~~ 653 (653)
T TIGR00232 648 KAKKLL 653 (653)
T ss_pred HHHHhC
Confidence 998764
|
This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous. |
| >PRK12754 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-87 Score=771.30 Aligned_cols=540 Identities=18% Similarity=0.210 Sum_probs=452.4
Q ss_pred HHHHHHHHHHHHHHhHhc-CCCCCCCcccHHHHHHHHhcc-cC----CC----CcEEEecCCchH---HHHHHHhCc---
Q 004968 99 LKQLAVEIRSELSSIVSK-TEKSLKSSLAAVELTVALHHV-FH----AP----VDKILWDVGEQT---YAHKILTGR--- 162 (721)
Q Consensus 99 l~~la~eiR~~~~~~~~~-~~Gh~~sslg~vel~~aL~~v-f~----~p----~D~iv~d~GH~~---y~h~~ltGr--- 162 (721)
.+++++++|..+++++.+ .+||+|+++|+++++.+||+. ++ .| +|+||+|+||.+ |+.+.+.|+
T Consensus 4 ~~~~~~~iR~~~~~~~~~a~sGH~G~~ls~a~i~~~Ly~~~l~~~p~~p~w~~RDRfvlS~GH~~~~lYa~l~~~G~~~~ 83 (663)
T PRK12754 4 RKELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLNHNPQNPSWADRDRFVLSNGHGSMLIYSLLHLTGYDLP 83 (663)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHhcCCCccCCCCCCCCeEEEeCccHHHHHHHHHHHcCCCCC
Confidence 467799999999999984 679999999999999999953 33 22 699999999999 999999997
Q ss_pred hhhhHHHHhhCC-CCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcC----------CCCeEEEEEcCCCcccchH
Q 004968 163 RSLIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKG----------KRECIVTVISNGTTMAGQA 231 (721)
Q Consensus 163 ~~~~~~~r~~gg-l~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g----------~~~~VvaviGDGal~~G~~ 231 (721)
.+++.++||+++ +.|||.....++..+++|++|++++.|+|||+|.|+++ .+++|+|++|||+++||.+
T Consensus 84 ~e~L~~fr~~gs~~~gHpe~~~~pgve~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~ 163 (663)
T PRK12754 84 MEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGIS 163 (663)
T ss_pred HHHHHHhccCCCCCCCCCCCCCCCCccccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhhchHH
Confidence 778999999987 78999887778888999999999999999999999886 3789999999999999999
Q ss_pred HHHHHHhhhcCCC-EEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHH
Q 004968 232 YEAMSNAGYLDSN-MIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVD 310 (721)
Q Consensus 232 ~Ealn~A~~~~~p-livIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~ 310 (721)
|||+++|+++++| ||+|++||+++ ++.++... .
T Consensus 164 ~EA~~~A~~~kL~nLi~ivD~N~~~--------idg~~~~~---~----------------------------------- 197 (663)
T PRK12754 164 HEVCSLAGTLKLGKLIAFYDDNGIS--------IDGHVEGW---F----------------------------------- 197 (663)
T ss_pred HHHHHHHHHhCCCCEEEEEEcCCCc--------cCcchhhc---c-----------------------------------
Confidence 9999999999975 89999999984 22221100 0
Q ss_pred HHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccccCC-
Q 004968 311 EYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGAS- 389 (721)
Q Consensus 311 ~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~~- 389 (721)
..+....|++|||+++.++||||++++.+++++++.. .++|++|+++|.||+|.++.|+ ..+|||.+.
T Consensus 198 -------~~~~~~r~~a~Gw~vi~vvDG~D~~ai~~A~~~a~~~-~~~Pt~I~~~T~~g~G~~~~e~---~~~~Hg~~l~ 266 (663)
T PRK12754 198 -------TDDTAMRFEAYGWHVIRGIDGHDADSIKRAVEEARAV-TDKPSLLMCKTIIGFGSPNKAG---THDSHGAPLG 266 (663)
T ss_pred -------CccHHHHHHhcCCeEEeeECCCCHHHHHHHHHHHHhc-CCCCEEEEEEeeeccCccccCC---CccccCCCCC
Confidence 0011346899999999548999999999999998863 4789999999999999998885 789998741
Q ss_pred -----------------C-------------CCCCCC------------------------------C------------
Q 004968 390 -----------------D-------------SNSLPF------------------------------G------------ 397 (721)
Q Consensus 390 -----------------f-------------~~g~~~------------------------------~------------ 397 (721)
| +.+++. +
T Consensus 267 ~~~~~~~~~~l~~~~~~F~v~~~v~~~~~~~~~~~~~~~~w~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~ 346 (663)
T PRK12754 267 DAEIALTREQLGWKYAPFEIPSEIYAQWDAKEAGQAKESAWNEKFAAYAKAYPQEAAEFTRRMKGEMPADFDAKAKEFIA 346 (663)
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhhhchHHHHHHHHHHHHHHHHCHHHHHHHHHHhcCCCchhHHHHHHHHhh
Confidence 2 011110 0
Q ss_pred -----CCcccHHHHHHHHHHHHHHcCCCeEEEecCCCCccC-----hHHHHHhCCCcEeeccccHHHHHHHHHHHHh-CC
Q 004968 398 -----NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLS-----LQLFQEKFPERYFDVGMAEQHAVTFSAGLAC-GG 466 (721)
Q Consensus 398 -----~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~-----l~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~-~G 466 (721)
.+....+++++++|.++++.+|+++++++|+.+++. ...|+++||+|||++||+||+|+++|+|||+ .|
T Consensus 347 ~~~~~~~~~atR~~~~~~L~~la~~~~~lv~~sADl~~s~~~~~~~~~~f~~~~p~r~i~~GIaE~~Mv~iaaGlA~~~G 426 (663)
T PRK12754 347 KLQANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAAGNYIHYGVREFGMTAIANGIALHGG 426 (663)
T ss_pred hhcccccchHHHHHHHHHHHHHHhhCCCEEEEeCCcccccCccccccccccccCCCCeEeeccchhhHHHHHhhHHhcCC
Confidence 011245789999999999999999999999988775 5789899999999999999999999999999 68
Q ss_pred CeeEEEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 004968 467 LKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVAT 545 (721)
Q Consensus 467 ~~p~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~ 545 (721)
++||++||++|++|+++||++. |++++||++++++.|+ +|+||+|||+++|+++||.+|||+|+.|+|+.|+..++..
T Consensus 427 ~~Pf~~tf~~F~~r~~~qir~~-a~~~l~V~~v~th~gi~~G~DG~THq~iEdla~lR~iPn~~V~~PaD~~E~~~~~~~ 505 (663)
T PRK12754 427 FLPYTSTFLMFVEYARNAVRMA-ALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKY 505 (663)
T ss_pred CeEEEEeeHHHHHHHHHHHHHH-HHcCCCeEEEEECCccccCCCCCCcccHHHHHHHhcCCCcEEecCCCHHHHHHHHHH
Confidence 9999999999999999999865 9999999999999999 8999999999999999999999999999999999999999
Q ss_pred HHHhCCCCEEEEecCCCcccccCCCCCCcceecCceEEEEeCC---cEEEEEechhhHHHHHHHHHHHhCCCCeEEeecC
Q 004968 546 VASIDDRPVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGK---DVALLGYGAMVQNCLKARALLSKLGIDVTVADAR 622 (721)
Q Consensus 546 a~~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~gk~~vl~eG~---dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~ 622 (721)
++...++|+|||++|++.+...........+..|+ +++++|. |++||++|+++.+|++|++.|+++||+++|||++
T Consensus 506 a~~~~~gP~yirl~R~~~p~~~~~~~~~~~~~~G~-~vl~~~~~~~dv~iiatGs~v~~Al~Aa~~L~~~Gi~~~Vvs~~ 584 (663)
T PRK12754 506 GVERQDGPTALILSRQNLAQQERTEEQLANIARGG-YVLKDCAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVSMP 584 (663)
T ss_pred HHhCCCCCEEEEeCCCCCCCCCCccchhhhcccCc-EEEEecCCCCCEEEEEECHHHHHHHHHHHHHHhhCCCcEEEEcC
Confidence 99866899999999987543211011012344555 8888874 9999999999999999999999999999999999
Q ss_pred ccccccHHH---HHHHhcc-CCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCC
Q 004968 623 FCKPLDIKL---VRELCQN-HTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLT 698 (721)
Q Consensus 623 ~l~PlD~e~---i~~l~~~-~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~ 698 (721)
|++|||++. ...++.. ....|++|.+...||...+ ..++. .+|+ |+|+.+|+.+++++++|||
T Consensus 585 s~kp~d~q~~~y~~~il~~~~~~~v~iE~~~~~~w~~~~----~~~~~--------~igi-~~FG~Sg~~~~l~~~~G~t 651 (663)
T PRK12754 585 STDAFDKQDAAYRESVLPKAVSARVAVEAGIADYWYKYV----GLNGA--------IVGM-TTFGESAPAELLFEEFGFT 651 (663)
T ss_pred ccCcCCCCCHHHHHhcCccccccceEeecccccchhhhc----cCCCC--------EEEe-CCCCCCCCHHHHHHHhCCC
Confidence 999999862 2223322 2245889998878887543 33331 3787 8999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 004968 699 GHHIAATALSLL 710 (721)
Q Consensus 699 ~~~I~~~i~~~l 710 (721)
++.|++++++++
T Consensus 652 ~e~I~~~~~~~~ 663 (663)
T PRK12754 652 VDNVVAKAKALL 663 (663)
T ss_pred HHHHHHHHHHhC
Confidence 999999998764
|
|
| >COG0021 TktA Transketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-79 Score=672.09 Aligned_cols=541 Identities=22% Similarity=0.248 Sum_probs=459.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhc-CCCCCCCcccHHHHHHHHhcc---cC--CC----CcEEEecCCchH---HHHHHHhCc
Q 004968 96 IKELKQLAVEIRSELSSIVSK-TEKSLKSSLAAVELTVALHHV---FH--AP----VDKILWDVGEQT---YAHKILTGR 162 (721)
Q Consensus 96 ~~~l~~la~eiR~~~~~~~~~-~~Gh~~sslg~vel~~aL~~v---f~--~p----~D~iv~d~GH~~---y~h~~ltGr 162 (721)
.+.++++++.||-..++++.+ ++||+|.++|++++...||.. || .| |||||+|.||.+ |+...|+|.
T Consensus 3 ~~~~~~~~naiR~Ls~davqkAnSGHPG~pmG~A~ia~~L~~~~l~~nP~nP~W~nRDRFVLSaGHgSmllYsllhl~Gy 82 (663)
T COG0021 3 MKIDKLLANAIRFLSMDAVQKANSGHPGAPMGAADIAYVLWTRFLKHNPDNPKWINRDRFVLSAGHGSMLLYSLLHLTGY 82 (663)
T ss_pred chHHHHHHHHHHHHHHHHHHhccCCCCCCCccHHHHHHHHHHHHhcCCCCCCCCCCCccEEecCCchhHHHHHHHHHccC
Confidence 456789999999999999985 799999999999999999853 33 34 899999999999 999999998
Q ss_pred ---hhhhHHHHhhCC-CCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCC----------CCeEEEEEcCCCccc
Q 004968 163 ---RSLIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGK----------RECIVTVISNGTTMA 228 (721)
Q Consensus 163 ---~~~~~~~r~~gg-l~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~----------~~~VvaviGDGal~~ 228 (721)
.+++..+||+++ .+|||.....+.....||++|+||+.|+|||+|.+..+. |+.++|++|||+++|
T Consensus 83 ~ls~edLk~FRQ~~SkTpGHPE~~~t~GVe~TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGclmE 162 (663)
T COG0021 83 DLSLEDLKNFRQLGSKTPGHPEYGHTPGVEATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLME 162 (663)
T ss_pred CCCHHHHHhhccCCCCCCCCCCcCCCCCeEeccCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCchHhc
Confidence 678899999996 789999877888888999999999999999999886543 579999999999999
Q ss_pred chHHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHH
Q 004968 229 GQAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAA 307 (721)
Q Consensus 229 G~~~Ealn~A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~ 307 (721)
|+++||...|++++ .+||+|.++|+.+ ++..+... +
T Consensus 163 Gvs~EA~slAG~l~L~kLIvlyD~N~Is--------iDG~~~~~---f-------------------------------- 199 (663)
T COG0021 163 GVSHEAASLAGHLKLGKLIVLYDSNDIS--------IDGDTSLS---F-------------------------------- 199 (663)
T ss_pred ccHHHHHHHHhhcCCCcEEEEEeCCCce--------eccCcccc---c--------------------------------
Confidence 99999999999999 8999999999973 33332210 0
Q ss_pred HHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCccccccccccccccc
Q 004968 308 KVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEG 387 (721)
Q Consensus 308 ~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~ 387 (721)
+.+....||++||+++.++||||++++.+++++||.. .++|++|+|+|+.|+|.+..| +..++||.
T Consensus 200 ----------~ed~~~RfeAyGW~vi~~~DG~D~e~I~~Ai~~Ak~~-~dkPtlI~~kTiIG~Gsp~ke---gt~~~HGa 265 (663)
T COG0021 200 ----------TEDVAKRFEAYGWNVIRVIDGHDLEAIDKAIEEAKAS-TDKPTLIIVKTIIGKGSPNKE---GTHKVHGA 265 (663)
T ss_pred ----------chhHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhc-CCCCeEEEEEeeeecCCCCcC---CCccccCC
Confidence 0011356999999999999999999999999999985 679999999999999999877 48899998
Q ss_pred CC------------------C--------------CCCCCC------------------------------C--------
Q 004968 388 AS------------------D--------------SNSLPF------------------------------G-------- 397 (721)
Q Consensus 388 ~~------------------f--------------~~g~~~------------------------------~-------- 397 (721)
+. | +.|+.. +
T Consensus 266 pLg~~ev~~~k~~lgw~~~~F~vp~ev~~~~~~~~~~g~~~~~~W~~~~~~y~~~~Pe~~~~~~r~~~~~~p~~~~~~~~ 345 (663)
T COG0021 266 PLGEEEVAAAKKALGWEPEPFEVPEEVYAAFRAVEERGAKAEAAWNELFAAYKKKYPELAAEFERRLNGELPANWAAFLP 345 (663)
T ss_pred CCCHHHHHHHHHHhCCCCCceecCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhChHHHHHHHHHhcccCchhHHHhhh
Confidence 52 2 122110 0
Q ss_pred -----CCcccHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh-----HHHH-HhCCCcEeeccccHHHHHHHHHHHHhCC
Q 004968 398 -----NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL-----QLFQ-EKFPERYFDVGMAEQHAVTFSAGLACGG 466 (721)
Q Consensus 398 -----~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l-----~~f~-~~fp~R~~d~GIaE~~~v~~AaGlA~~G 466 (721)
.+....|++..++|..+....|+++..+||+.+|+.+ ..|. +.|++|++.+||+|++|.++++|||++|
T Consensus 346 ~~~~~~~~~ATR~as~~~L~~l~~~~p~l~GGSADLa~Sn~T~~~~~~~~~~~~~~gr~i~~GVREf~M~AimNGialhG 425 (663)
T COG0021 346 KFEANGKSIATRKASGKALNALAKKLPELIGGSADLAPSNLTKISGSGDFSPENYAGRYIHFGVREFAMAAIMNGIALHG 425 (663)
T ss_pred hhcccccccchHHHHHHHHHHHHhhCccccccCcccccCccccccccCCCCCCCCCCCeeEEeeHHHHHHHHHHhHHHhc
Confidence 0124568899999999999999999999999988754 3444 5778999999999999999999999996
Q ss_pred -CeeEEEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHH
Q 004968 467 -LKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVA 544 (721)
Q Consensus 467 -~~p~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~ 544 (721)
++||.+||..|..++..++ +.+|++++|+++|.+|.++ +|+||||||++++++.+|.|||+.|+.|+|+.|...+|+
T Consensus 426 g~~pyggTFlvFsdY~r~Ai-RlaALm~l~~~~V~THDSIgvGEDGPTHqPiEqLa~LRaiPN~~V~RPaD~~Et~~aw~ 504 (663)
T COG0021 426 GFIPYGGTFLVFSDYARPAV-RLAALMGLPVIYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLSVIRPADANETAAAWK 504 (663)
T ss_pred CceeecceehhhHhhhhHHH-HHHHhcCCCeEEEEecCceecCCCCCCCCcHHHHHHhhccCCceeEecCChHHHHHHHH
Confidence 6999999999999999988 5779999999999999999 899999999999999999999999999999999999999
Q ss_pred HHHHhCCCCEEEEecCCCcccccCCCCCCcceecCceEEEEe----CCcEEEEEechhhHHHHHHHHHHHhCCCCeEEee
Q 004968 545 TVASIDDRPVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVE----GKDVALLGYGAMVQNCLKARALLSKLGIDVTVAD 620 (721)
Q Consensus 545 ~a~~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~gk~~vl~e----G~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId 620 (721)
.|+.+.++|+++.++|++.+.. +.. ........+|++++ +.|++||++||.|..|++|++.|+++|++++||+
T Consensus 505 ~Al~~~~gPt~LiltRQnlp~l--~~t-~~~~~~kGaYvl~~~~~~~pd~iliAtGSEV~lAv~Aa~~L~~~~~~vrVVS 581 (663)
T COG0021 505 YALERKDGPTALILTRQNLPVL--ERT-DLEGVAKGAYVLKDSGGEDPDVILIATGSEVELAVEAAKELEAEGIKVRVVS 581 (663)
T ss_pred HHHhcCCCCeEEEEecCCCCcc--CCC-ccccccCccEEEeecCCCCCCEEEEecccHHHHHHHHHHHHHhcCCceEEEe
Confidence 9999889999999999996543 221 12223455789988 4799999999999999999999998899999999
Q ss_pred cCccccccHHHH---HHHh-ccCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcC
Q 004968 621 ARFCKPLDIKLV---RELC-QNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAG 696 (721)
Q Consensus 621 ~~~l~PlD~e~i---~~l~-~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~g 696 (721)
++|...||++.. .+++ ......|.||.+...||...+- .+ -..+|+ ++|+.+|+.++++++||
T Consensus 582 ~P~~~~fe~Q~~~Y~~~vL~~~v~~rvaiEa~~~~~W~ky~g----~~--------g~~ig~-~~FG~Sap~~~l~~~fG 648 (663)
T COG0021 582 MPSFELFEKQDEEYRESVLPGAVTARVAIEAGSALGWYKYVG----LD--------GAVIGM-DSFGASAPGDELFKEFG 648 (663)
T ss_pred ccchHHHHcCCHHHHHhhccCCccceEEEEeccccchhhhcC----CC--------CcEEee-ccCcCCCCHHHHHHHhC
Confidence 999999987543 2333 2334468899999899986542 22 246787 89999999999999999
Q ss_pred CCHHHHHHHHHHHh
Q 004968 697 LTGHHIAATALSLL 710 (721)
Q Consensus 697 l~~~~I~~~i~~~l 710 (721)
+|++.|++++++++
T Consensus 649 ft~e~vv~~~~~~l 662 (663)
T COG0021 649 FTVENVVAKAKSLL 662 (663)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999999876
|
|
| >TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-78 Score=702.64 Aligned_cols=589 Identities=17% Similarity=0.160 Sum_probs=455.2
Q ss_pred HHHHHHHHHHHHHHHHhHhc-C------CCCCCCcccHHHHHHHHhc-ccCCC-----CcEEEecCCchH---HHHHHHh
Q 004968 97 KELKQLAVEIRSELSSIVSK-T------EKSLKSSLAAVELTVALHH-VFHAP-----VDKILWDVGEQT---YAHKILT 160 (721)
Q Consensus 97 ~~l~~la~eiR~~~~~~~~~-~------~Gh~~sslg~vel~~aL~~-vf~~p-----~D~iv~d~GH~~---y~h~~lt 160 (721)
+-.+++++.+|..++.++.+ + +||+++++|++++..+||. +|+.+ +| +|+++||.+ |+...+.
T Consensus 73 ~~~~~~a~~iR~~a~~mv~~A~~~~~~~gGH~gs~lS~a~i~~vLy~~~lr~~~~~~~rD-~VlskGHasp~lYA~l~l~ 151 (889)
T TIGR03186 73 QLEERLAAILRWNALAMVVRANRAYGELGGHIASYASAADLFEVGFNHFFRAAGDASGGD-LVYFQPHSAPGVYARAFLE 151 (889)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcCcHHHHHHHHHHHHHhCCCCCCCCCCC-EEEECCchHHHHHHHHHHc
Confidence 44578899999999999974 3 5999999999999999985 45421 56 799999999 8989999
Q ss_pred Cc--hhhhHHHHhh--C-CCCCCCCCCC-CCCCCcCcCCCcchHHHHHHHHHHHHHcC-------CCCeEEEEEcCCCcc
Q 004968 161 GR--RSLIHTLRKK--D-GISGYTSRSE-SEYDPFNAGHGCNSVSAGLGMAVARDIKG-------KRECIVTVISNGTTM 227 (721)
Q Consensus 161 Gr--~~~~~~~r~~--g-gl~G~~~~~e-s~~d~~~~G~~G~~is~A~G~AlA~~l~g-------~~~~VvaviGDGal~ 227 (721)
|+ .+++.++||. + ++++||.+.. +.+..|.||++|+|++.|+|+|++.|+.. .+++|+|++|||+++
T Consensus 152 G~l~~e~L~~fRq~~~~~gl~~~phP~~~p~~ve~sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~llGDGEl~ 231 (889)
T TIGR03186 152 GFLSDAQLAHYRQEIAGPGLCSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFFGDGEMD 231 (889)
T ss_pred CCCCHHHHHHhcCCCCCCCCCCCCCcccCCCCeEcCCCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEEEcchhhc
Confidence 98 7789999997 4 5778777755 33577899999999999999999988433 369999999999999
Q ss_pred cchHHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhc-cCcch---
Q 004968 228 AGQAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKR-IGRGM--- 302 (721)
Q Consensus 228 ~G~~~Ealn~A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~-~g~~~--- 302 (721)
||.+|||+..|++++ .|||+|+|+|+++ ++.++......++ +.-.+++..+|.+.+. +|.+.
T Consensus 232 EG~~wEA~~~Aa~~kLdNLi~IvD~N~~q--------lDG~t~~~~~~~e-----~l~~kf~a~GW~vi~v~wG~~wd~l 298 (889)
T TIGR03186 232 EPESIGALSLAARERLDNLVFVINCNLQR--------LDGPVRGNGRIID-----ELESQFAGAGWNVIKVLWGSDWDAL 298 (889)
T ss_pred cHHHHHHHHHHHHhCCCCEEEEEeCCCCc--------cCCccccccccch-----HHHHHHHhCCCEEEEEeecCchHHh
Confidence 999999999999999 7999999999984 2222221100011 1112233344443332 11110
Q ss_pred ------HHHHHHHHHHh---------------hc-ccCC--CccceeeeeC----ceEEeccCCCCHHHHHHHHHHHHhc
Q 004968 303 ------HEWAAKVDEYA---------------RG-MIGP--QGSTLFEELG----LYYIGPVDGHNIEDLISVLQEVASL 354 (721)
Q Consensus 303 ------~~~~~~~~~~~---------------~~-~~~~--~~~~l~ea~G----~~~~g~vdGhd~~~l~~al~~a~~~ 354 (721)
..+.+++++.+ +. +++. ....+.+.+. |+. .-+|||++.|.+|+++|++.
T Consensus 299 ~~~d~~~~L~~~~~~~~dg~yq~~~~~~ga~~R~~ff~~~~~~~~lv~~~sD~~i~~l--~rgGHD~~~i~~A~~~A~~~ 376 (889)
T TIGR03186 299 FARDATGALARAFAHTVDGQFQTFSANDGAYNRARFFGQDPALAALVAHLSDEDIDRL--RRGGHDARKLYAAYDRAVRH 376 (889)
T ss_pred hccccchHHHHHHHhcccHHHHHHhhcchHHHHHHhcCccHHHHHHhhcccHHhhhhh--cCCCCCHHHHHHHHHHHHhC
Confidence 01111111111 10 0000 0000000000 011 11799999999999998874
Q ss_pred CCCCCEEEEEEEeccCCCcccccccccccccccCC--------------------------C-C----------------
Q 004968 355 GSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGAS--------------------------D-S---------------- 391 (721)
Q Consensus 355 ~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~~--------------------------f-~---------------- 391 (721)
.++|++|.++|+||+|...+++ +..++|+..+ | .
T Consensus 377 -~~~PTvIla~TvkG~G~~~~g~--~~~~~H~~~~l~~e~~~~~r~~~g~~~~de~~~~~~~~~~~~~s~~~~~l~~~r~ 453 (889)
T TIGR03186 377 -EGRPTVILAKTMKGFGMGAIGQ--GRMTTHQQKKLDVEALLAFRDRFRLPLSDADVEQLKFYKPDEDSAEMRYLHARRA 453 (889)
T ss_pred -CCCCEEEEEEeeecCCCCcccC--ccccccCcCcCCHHHHHHHHHHcCCCCChHHhhcccccCCCCCCHHHHHHHHHHH
Confidence 4689999999999999977665 5678888432 2 0
Q ss_pred --CCC----------C--CC-------------CCcccHHHHHHHHHHHHHH---cCCCeEEEecCCCCccChH------
Q 004968 392 --NSL----------P--FG-------------NYSRTYDDCFIEALVMEAE---KDKDIVVVHAGMEMDLSLQ------ 435 (721)
Q Consensus 392 --~g~----------~--~~-------------~~~~~~~~~~~~~L~~~~~---~d~~iv~i~ad~~~~~~l~------ 435 (721)
.|. + ++ ....+.+.+|++.|..+++ ..++||.|.+|...++||+
T Consensus 454 ~l~g~~p~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~sT~~Af~r~l~~L~~~~~~~~riV~i~pD~a~t~gm~~~f~~~ 533 (889)
T TIGR03186 454 ALGGYLPRRRTAATHALAVPALPSWGRFALDAEGKEMSTTMAIVRMLGALLKDAELGPRIVPIVADEARTFGMANLFRQV 533 (889)
T ss_pred HcCCCCCCCCCCCccccCCCCcchhhhhhccCCCCcccHHHHHHHHHHHHHhCccccCCEEEeCCcccccCCchhhhccc
Confidence 000 0 00 0224568899999666664 4688999999999998654
Q ss_pred -------------------HHHHhCCCcEeeccccHHHHHH--HHHHHHhC----CCeeEEEecHhhH-HHHHHHHHHHh
Q 004968 436 -------------------LFQEKFPERYFDVGMAEQHAVT--FSAGLACG----GLKPFCIIPSAFL-QRAYDQVVNDV 489 (721)
Q Consensus 436 -------------------~f~~~fp~R~~d~GIaE~~~v~--~AaGlA~~----G~~p~~~tys~Fl-~ra~dqi~~~~ 489 (721)
.|++.+|+|||++||+||+|++ +|+|+|++ |++||+.+|++|. +|++|||++.
T Consensus 534 gi~~~~gq~y~~~d~~~~~~y~e~~p~R~ie~GIAEqnmv~~~iAAGlA~a~~G~g~iPf~~tya~F~~~Ra~Dqir~a- 612 (889)
T TIGR03186 534 GIYSPLGQRYEPEDLGSMLYYREDTDGQILEEGISEAGAISSWIAAATSYSVHDLPMLPFYIYYSMFGFQRIGDLIWAA- 612 (889)
T ss_pred cccCcccccCCccchHHHHHHhhcCCCcEEEechhhHHHHHHHHHHHHhhhhcCCCceEEEEehHHhHhhhHHHHHHHH-
Confidence 3456789999999999999999 99999998 8899999999995 8999999888
Q ss_pred hcCCcceEEEEcCCCC--cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHh-----CCCCEEEEecCCC
Q 004968 490 DQQRLPVRFVITSAGL--VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI-----DDRPVCFRYPRGA 562 (721)
Q Consensus 490 a~~~lpVv~v~~~~G~--~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~-----~~~P~~ir~~r~~ 562 (721)
|+++++|++++.++|+ .|.+|+|||..+|+++++.+|||+|+.|+|+.|+..+++.++.+ .++|+|||+.|.+
T Consensus 613 ~~~~a~v~lvG~~aG~tTlg~eG~tHq~~eDial~r~iPn~tv~~PaDa~E~a~iv~~~~~rm~~~~~~gp~YlRl~r~~ 692 (889)
T TIGR03186 613 ADQRARGFLIGATSGKTTLGGEGLQHQDGTSHLAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYYLTVTNEN 692 (889)
T ss_pred hhcCCCcEEEEECCCccCCCCCcccccchHhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHHhcCCCceEEEEeCCCC
Confidence 9999999999999999 58999999999999999999999999999999999999987651 3689999999987
Q ss_pred cccccCCCCCCcceecCc--e-EEEE----eCCcEEEEEechhhHHHHHHHHHHHhC-CCCeEEeecCccccccHHHHHH
Q 004968 563 IVRTDLPGYRGIPIEIGK--G-KVLV----EGKDVALLGYGAMVQNCLKARALLSKL-GIDVTVADARFCKPLDIKLVRE 634 (721)
Q Consensus 563 ~~~~~~p~~~~~~~~~gk--~-~vl~----eG~dv~Iva~Gs~v~~al~Aa~~L~~~-Gi~v~VId~~~l~PlD~e~i~~ 634 (721)
.....++...-..++.|+ + ++++ +|++++|+++|.++++|++|+++|+++ ||+++|+|+.|+||||++.+.
T Consensus 693 ~~~p~~~~~~~~~~~~gi~kg~y~l~~~~~~g~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~V~sv~SikpLdrd~i~- 771 (889)
T TIGR03186 693 YAQPSLPEDRLDAVRRGILKGMYPLDPAALAAARVQLLGSGAILGEVQAAARLLRDDWGIDAAVWSVTSFTELARDGRA- 771 (889)
T ss_pred CCCCCcCCCcccchhcchhheeeEeeccCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEEECCCCCHhHHHHHH-
Confidence 532223322102244444 6 8888 578999999999999999999999987 999999999999999999986
Q ss_pred HhccCCeEEEEcCC---C-CCChHH-------------HHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCC
Q 004968 635 LCQNHTFLITVEEG---S-IGGFGS-------------HVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGL 697 (721)
Q Consensus 635 l~~~~~~vvvvEe~---~-~gG~gs-------------~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl 697 (721)
+++++.|+++|++ + .||+++ .|++++.+.. +.+++++|+ |.|+.+|++++|+++||+
T Consensus 772 -a~r~~~l~t~Eeh~~~~v~ggLg~~~~p~va~~D~~~avae~i~~~~----p~~~~~LG~-D~FG~Sgtr~~Lr~~fgl 845 (889)
T TIGR03186 772 -AERAQRLGDAERPPSPHVAQALGATQGPVIAATDYVRAVPELIRAYV----PRRYVTLGT-DGFGRSDTRAALRAFFEV 845 (889)
T ss_pred -HHHhCCcccccccccccHhhhhCCCCCCeeeecchHHHHHHHHHhhC----CCCEEEecc-CCCCCcCCHHHHHHHhCC
Confidence 6777899999997 5 699999 9999998853 568999999 999999999999999999
Q ss_pred CHHHHHHHHHHHhhc
Q 004968 698 TGHHIAATALSLLGR 712 (721)
Q Consensus 698 ~~~~I~~~i~~~l~~ 712 (721)
|+++|+.++++++.+
T Consensus 846 da~~Iv~aal~~L~~ 860 (889)
T TIGR03186 846 DRASIVIAALQALAD 860 (889)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999998843
|
Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component. |
| >PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-77 Score=690.71 Aligned_cols=549 Identities=16% Similarity=0.190 Sum_probs=455.5
Q ss_pred HHHHHHHHHHHHHHhHhc-C------CCCCCCcccHHHHHHHHhc-ccCCC-----CcEEEecCCchH---HHHHHHhCc
Q 004968 99 LKQLAVEIRSELSSIVSK-T------EKSLKSSLAAVELTVALHH-VFHAP-----VDKILWDVGEQT---YAHKILTGR 162 (721)
Q Consensus 99 l~~la~eiR~~~~~~~~~-~------~Gh~~sslg~vel~~aL~~-vf~~p-----~D~iv~d~GH~~---y~h~~ltGr 162 (721)
.+++++.||...+.++.+ + |||+++++|++++..+||. .|+.| +| +|+++||.+ |+...+.|+
T Consensus 81 e~~i~~~iR~~a~~mv~~An~~~~~~GGH~~s~~S~a~i~~vl~~~~~r~~~~~~~~D-~V~skGHasp~lYA~~~l~G~ 159 (891)
T PRK09405 81 ERRIRSYIRWNAAAMVLRANKKDLGLGGHISSFASSATLYEVGFNHFFRAPNEPHGGD-LVFFQGHASPGIYARAFLEGR 159 (891)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCcccChHHHHHHHHHHHHhhCCCCCCCCCCC-EEEECchHHHHHHHHHHHcCC
Confidence 456699999999999873 2 4999999999999999985 45532 56 888999999 999999998
Q ss_pred --hhhhHHHHhh--C-CCCCCCCCCCC-CCCCcCcCCCcchHHHHHHHHHHHHH-------cCCCCeEEEEEcCCCcccc
Q 004968 163 --RSLIHTLRKK--D-GISGYTSRSES-EYDPFNAGHGCNSVSAGLGMAVARDI-------KGKRECIVTVISNGTTMAG 229 (721)
Q Consensus 163 --~~~~~~~r~~--g-gl~G~~~~~es-~~d~~~~G~~G~~is~A~G~AlA~~l-------~g~~~~VvaviGDGal~~G 229 (721)
.+++.++||. | ++++||.+..- ++..|.+|++|+|++.|+|+|++.|+ ...+++|+|++|||+++||
T Consensus 160 l~~e~L~~fR~~~~g~gl~syPhp~~~p~~~~~~tgS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv~~~~GDGEldEg 239 (891)
T PRK09405 160 LTEEQLDNFRQEVDGKGLSSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFLKYLENRGLKDTSDQKVWAFLGDGEMDEP 239 (891)
T ss_pred CCHHHHHHhcCCCCCCCCCCCCCcCCCCCCeecCccccchhHHHHHHHHHhCccccccccccCCCceEEEEEcchhhccH
Confidence 7789999995 4 79999998653 45678999999999999999999883 4568999999999999999
Q ss_pred hHHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHH
Q 004968 230 QAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAK 308 (721)
Q Consensus 230 ~~~Ealn~A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~ 308 (721)
.+|||+..|++++ .|||||+|+|+++ .+.++-...+.++++
T Consensus 240 ~~~EA~~~A~~~~LdNLi~ivD~N~q~--------lDG~v~~~~~~~~~l------------------------------ 281 (891)
T PRK09405 240 ESLGAISLAAREKLDNLIFVINCNLQR--------LDGPVRGNGKIIQEL------------------------------ 281 (891)
T ss_pred HHHHHHHHHHHhCCCCEEEEEECCCcc--------cCCccccccccchhH------------------------------
Confidence 9999999999999 7999999999984 233332111101110
Q ss_pred HHHHhhcccCCCccceeeeeCceEEecc----------------------------------------------------
Q 004968 309 VDEYARGMIGPQGSTLFEELGLYYIGPV---------------------------------------------------- 336 (721)
Q Consensus 309 ~~~~~~~~~~~~~~~l~ea~G~~~~g~v---------------------------------------------------- 336 (721)
..+|+++||+++.++
T Consensus 282 -------------~~~f~a~GW~Vi~v~wG~~wd~l~~~d~~g~L~~~~~~~~Dg~yq~~~~~~ga~~R~~ffg~~~~~~ 348 (891)
T PRK09405 282 -------------EGIFRGAGWNVIKVIWGSRWDPLLAKDTSGKLVQLMNETVDGDYQTYKAKDGAYVREHFFGKYPETK 348 (891)
T ss_pred -------------HHHHhhCCCEEEEEeccccchhhhccCCccHHHHHHHhCCcHHHHHHHhcccHHHHHHhcCCCHHHH
Confidence 235666677766332
Q ss_pred ----------------CCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCC-cccccccccccccccCC----------
Q 004968 337 ----------------DGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRA-EDTQKSEAIEKQQEGAS---------- 389 (721)
Q Consensus 337 ----------------dGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~-~~ae~~~~~~~~Hg~~~---------- 389 (721)
+|||+++|.+|++++++. .++|++|.++|+||+|. +..| +...+|+..+
T Consensus 349 ~lv~~~sD~~i~~l~~gGHD~~~i~~A~~~A~~~-~~~PtvIia~TvkG~G~~~~~e---~~~~~H~~~~l~~e~~~~~r 424 (891)
T PRK09405 349 ALVADMSDDDIWALNRGGHDPRKVYAAYKAAVEH-KGQPTVILAKTIKGYGMGEAGE---GKNIAHQVKKLDLDDLKHFR 424 (891)
T ss_pred HHHhhCCHHHHHHhccCCCCHHHHHHHHHHHHhC-CCCCEEEEEeceecCCCCcccC---CCccccCCCCCCHHHHHHHH
Confidence 499999999999988874 47899999999999999 5555 4778887421
Q ss_pred ----------------C---CC---------------C-C---------CC--C-------------CCcccHHHHHHHH
Q 004968 390 ----------------D---SN---------------S-L---------PF--G-------------NYSRTYDDCFIEA 410 (721)
Q Consensus 390 ----------------f---~~---------------g-~---------~~--~-------------~~~~~~~~~~~~~ 410 (721)
| +. | . ++ + ....+.+.+|+++
T Consensus 425 ~~~g~~~~d~~~~~~~~~~~~~~s~e~~~l~~~r~~l~g~~p~r~~~~~~~~~P~~~~~~~~~~~~~~~~~sT~~Afgr~ 504 (891)
T PRK09405 425 DRFNIPISDEQLEKLPYYKPGEDSPEIKYLHERRKALGGYLPARRPKFEPLEVPALSAFEALLKGSGEREISTTMAFVRI 504 (891)
T ss_pred HHcCCCCChhHhccCCCcCCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCChhhHHHhhccCCCCcccHHHHHHHH
Confidence 1 00 0 0 00 0 1224668999999
Q ss_pred HHHHHHc---CCCeEEEecCCCCccCh-------------------------HHHHHhCCCcEeeccccHHHHHH--HHH
Q 004968 411 LVMEAEK---DKDIVVVHAGMEMDLSL-------------------------QLFQEKFPERYFDVGMAEQHAVT--FSA 460 (721)
Q Consensus 411 L~~~~~~---d~~iv~i~ad~~~~~~l-------------------------~~f~~~fp~R~~d~GIaE~~~v~--~Aa 460 (721)
|.++++. +++||.+.+|+..++|+ ..|+++||+|||++||+||+|++ +|+
T Consensus 505 L~~L~~~~~~~~riV~i~pD~a~t~g~~~~f~~~gi~~~~gq~y~~~d~~~~~~yke~~PgRf~e~GIAEqnmv~~~vAA 584 (891)
T PRK09405 505 LNILLKDKEIGKRIVPIIPDEARTFGMEGLFRQIGIYNPHGQLYTPVDRDQLMYYKESKDGQILQEGINEAGAMASWIAA 584 (891)
T ss_pred HHHHHhccccCCcEEEeccccccccCcchhhccccccccccccccccccHHHHHHHHcCCCcEEEechhhhHHHHHHHHH
Confidence 9999986 89999999999998887 56778999999999999999999 999
Q ss_pred HHHhC----CCeeEEEecHhh-HHHHHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEeeC
Q 004968 461 GLACG----GLKPFCIIPSAF-LQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPS 534 (721)
Q Consensus 461 GlA~~----G~~p~~~tys~F-l~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~Ps 534 (721)
|+|++ |++||+.+|++| .+|++|||++.+++++++|+++.+++|. .+.+|.|||..+|+.+++.+|||+|+.|+
T Consensus 585 GlA~a~~G~g~iPF~~tya~F~~~Ra~Dqir~a~~~~~~~v~iggt~gg~tl~~eG~qHqdg~s~~l~raiPn~tv~~PA 664 (891)
T PRK09405 585 ATSYSTHGEPMIPFYIYYSMFGFQRIGDLAWAAGDQRARGFLLGGTAGRTTLNGEGLQHEDGHSHILASTIPNCVSYDPA 664 (891)
T ss_pred HHhhhhcCCCceEEEEehHHhhhhhHHHHHHHHHHhcCCCeEEEEECccccCCCCcccCCchhhHHHHhhCCCCEEEeCC
Confidence 99998 889999999999 6999999999999999999999999999 68899999999999999999999999999
Q ss_pred CHHHHHHHHHHHHH---hCCC--CEEEEecCCCcccccCCCCCCcceecCce-EEEEeCC------cEEEEEechhhHHH
Q 004968 535 DEDELVDMVATVAS---IDDR--PVCFRYPRGAIVRTDLPGYRGIPIEIGKG-KVLVEGK------DVALLGYGAMVQNC 602 (721)
Q Consensus 535 d~~E~~~~l~~a~~---~~~~--P~~ir~~r~~~~~~~~p~~~~~~~~~gk~-~vl~eG~------dv~Iva~Gs~v~~a 602 (721)
|+.|+..+++.+++ ...+ |.|+|+...+......| ++.++.++|+ +++++|. +|+|+++|.++++|
T Consensus 665 Da~E~a~iv~~~l~rm~~~~~~~~yYlrl~ne~~~~~~~p--e~~~~~igKg~y~Lr~g~~~~~~~dV~LlasG~~v~eA 742 (891)
T PRK09405 665 FAYEVAVIVQDGLRRMYGEQENVFYYITVMNENYHQPAMP--EGAEEGILKGMYKLETAEGKKGKPKVQLLGSGTILREV 742 (891)
T ss_pred CHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCCCCC--cccccccceEEEEeccCCCCCCCCCEEEEeccHHHHHH
Confidence 99999999999876 1344 67788753222211222 2456789997 9999976 89999999999999
Q ss_pred HHHHHHHHh-CCCCeEEeecCccccccHHHHHHHh---------ccCCeEEEEcCCCCCChH-------HHHHHHHHhcC
Q 004968 603 LKARALLSK-LGIDVTVADARFCKPLDIKLVRELC---------QNHTFLITVEEGSIGGFG-------SHVSHFIALDG 665 (721)
Q Consensus 603 l~Aa~~L~~-~Gi~v~VId~~~l~PlD~e~i~~l~---------~~~~~vvvvEe~~~gG~g-------s~v~~~l~~~~ 665 (721)
++|+++|++ +||+++|+|+.|+||||++.+.... +++..|+++|++ .||.+ +.|++.+.+..
T Consensus 743 L~AAe~L~~~~GI~a~Visv~SikpLdrd~i~~~~~~~l~~~~~~~~~~V~t~ee~-~gG~~Vtv~D~~~aVae~la~~~ 821 (891)
T PRK09405 743 LEAAEILAEDYGVAADVWSVTSFNELARDGQDVERWNMLHPTEEPRVPYVTQVLKG-AEGPVVAATDYMKLFAEQIRAFV 821 (891)
T ss_pred HHHHHHHhhhhCCCeEEEECCCCCHhhHHHHHHHHHhhcCcccccccchhhhhhcc-cCCcEEEecchHHHHHHHHHHhC
Confidence 999999998 7999999999999999999986654 556678888887 57777 88999888753
Q ss_pred CCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhh
Q 004968 666 LLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 711 (721)
Q Consensus 666 ~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 711 (721)
+.+++++|+ |.|+.+|++++|+++||||+++|++++++++.
T Consensus 822 ----p~~~~~LGv-D~FG~SGt~~~L~~~fglda~~Iv~aal~~La 862 (891)
T PRK09405 822 ----PGDYVVLGT-DGFGRSDTREALRRFFEVDAEYVVVAALKALA 862 (891)
T ss_pred ----CCCEEEEec-CCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 568999999 99999999999999999999999999999984
|
|
| >PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-75 Score=678.79 Aligned_cols=548 Identities=18% Similarity=0.196 Sum_probs=441.8
Q ss_pred HHHHHHHHHHHHHHhHhc-CC------CCCCCcccHHHHHHHHhc-ccC-----CCCcEEEecCCchH---HHHHHHhCc
Q 004968 99 LKQLAVEIRSELSSIVSK-TE------KSLKSSLAAVELTVALHH-VFH-----APVDKILWDVGEQT---YAHKILTGR 162 (721)
Q Consensus 99 l~~la~eiR~~~~~~~~~-~~------Gh~~sslg~vel~~aL~~-vf~-----~p~D~iv~d~GH~~---y~h~~ltGr 162 (721)
.++++..+|..++.++.+ +. ||+++++|++++..+||. +|+ ..+| +|++.||.+ |+-..+.|+
T Consensus 89 e~~i~~~iR~~a~~mv~~A~~~~~~~GGH~~s~~S~a~i~~vl~~~~~r~~~~~~~~D-~V~skGHasp~lYA~~~l~G~ 167 (896)
T PRK13012 89 EERLAAIIRWNALAMVVRANRAYGELGGHIASYASAADLFEVGFNHFFRGRDDAGGGD-LVYFQPHSAPGIYARAFLEGR 167 (896)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccHHHHHHHHHHHHhhcCCCCCCCCCC-EEEECcchHHHHHHHHHHcCC
Confidence 456899999999999974 33 999999999999999985 444 1478 588899999 999999998
Q ss_pred --hhhhHHHHhh---CCCCCCCCCCCCC-CCCcCcCCCcchHHHHHHHHHHHH-------HcCCCCeEEEEEcCCCcccc
Q 004968 163 --RSLIHTLRKK---DGISGYTSRSESE-YDPFNAGHGCNSVSAGLGMAVARD-------IKGKRECIVTVISNGTTMAG 229 (721)
Q Consensus 163 --~~~~~~~r~~---ggl~G~~~~~es~-~d~~~~G~~G~~is~A~G~AlA~~-------l~g~~~~VvaviGDGal~~G 229 (721)
.+++.++||. +|+++||++...| +..|.||++|+|++.|+|+|++.| ....+++|+|++|||+++||
T Consensus 168 l~~e~L~~fR~~~~~~gl~~~P~p~~~p~~~e~~TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~lGDGEl~Eg 247 (896)
T PRK13012 168 LSEEQLDHFRQEIGGPGLSSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGFFGDGEMDEP 247 (896)
T ss_pred CCHHHHHHhcCCCCCCCCCCCCCcCCCCCCEecCCCCchHHHHHHHHHHHhcccccccccccCCCCeEEEEEchhhhccH
Confidence 7789999997 4689999886544 577999999999999999999988 34567999999999999999
Q ss_pred hHHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHH
Q 004968 230 QAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAK 308 (721)
Q Consensus 230 ~~~Ealn~A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~ 308 (721)
.+|||+..|++++ .|||+|+|+|+++ .+.++-...+.++ ++
T Consensus 248 ~~~eA~~~A~~~~LdNLi~ivD~N~~~--------lDG~v~~~~~~~~---------------------------~l--- 289 (896)
T PRK13012 248 ESIAALSLAAREGLDNLVFVINCNLQR--------LDGPVRGNGRIIQ---------------------------EL--- 289 (896)
T ss_pred HHHHHHHHHHHhCCCcEEEEEECCCcc--------ccCccccccccch---------------------------HH---
Confidence 9999999999999 7999999999984 2333321111011 11
Q ss_pred HHHHhhcccCCCccceeeeeCceEEecc-------------------------C--------------------------
Q 004968 309 VDEYARGMIGPQGSTLFEELGLYYIGPV-------------------------D-------------------------- 337 (721)
Q Consensus 309 ~~~~~~~~~~~~~~~l~ea~G~~~~g~v-------------------------d-------------------------- 337 (721)
..+|+++||+++.++ |
T Consensus 290 -------------~~~f~a~GW~Vi~v~wg~~wd~l~~~d~~~~l~~~~~~~~Dg~yq~~~~~~g~~~r~~ff~~~~~~~ 356 (896)
T PRK13012 290 -------------EALFRGAGWNVIKVLWGSDWDALFARDTTGALVRRFAETVDGQFQTFKANDGAYNREHFFGQDPELA 356 (896)
T ss_pred -------------HHHHHhCCCEEEEEecccchHHHhcCCCccHHHHHHHhCCcHHHHHHhhcchHHHHHHhccccHHHH
Confidence 235677777777432 6
Q ss_pred -----------------CCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccccC------------
Q 004968 338 -----------------GHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGA------------ 388 (721)
Q Consensus 338 -----------------Ghd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~------------ 388 (721)
|||+++|.+|++++++. .++|++|.++|+||+|.+.+.+ +..++|+..
T Consensus 357 ~lv~~~~d~~i~~l~rgGHD~~~i~~A~~~a~~~-~~~PtvIla~TvkG~G~~~~~e--~~~~~H~~~~l~~e~~~~~r~ 433 (896)
T PRK13012 357 ALVAHLSDEDIDRLKRGGHDPRKVYAAYAAAVRH-KGQPTVILAKTKKGYGMGEAGE--GRMTTHQQKKLDVEALKAFRD 433 (896)
T ss_pred HHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhC-CCCCEEEEEEeeecCCCCcccC--CCcccccCCCCCHHHHHHHHH
Confidence 99999999999988864 4689999999999999984422 477888731
Q ss_pred --------------CC---CC---------------C-C-C--------CC---------------CCcccHHHHHHHHH
Q 004968 389 --------------SD---SN---------------S-L-P--------FG---------------NYSRTYDDCFIEAL 411 (721)
Q Consensus 389 --------------~f---~~---------------g-~-~--------~~---------------~~~~~~~~~~~~~L 411 (721)
|| +. + - + ++ ....+.+.+|+++|
T Consensus 434 ~~g~p~~d~~~~~~pf~~p~~~~~~~~~l~~r~~~l~g~~P~r~~~~~~l~~p~~~~~~~~~~~~~~~~isTr~Afgr~L 513 (896)
T PRK13012 434 RFRLPLSDEQLEQLPFYKPAEDSPEMRYLHARRAALGGYLPRRRTAAPPLPVPPLSAFAQFALGAGGKEMSTTMAFVRML 513 (896)
T ss_pred HcCCCCChhhhccCCCcCCccccHHHHHHHHHHHHhcCcCCcccccccccCCCchhhHHHhhcccCCCcchHHHHHHHHH
Confidence 12 00 0 0 0 00 02246789999999
Q ss_pred HHHHHc---CCCeEEEecCCCCccCh-------------------------HHHHHhCCCcEeeccccHHHHHH--HHHH
Q 004968 412 VMEAEK---DKDIVVVHAGMEMDLSL-------------------------QLFQEKFPERYFDVGMAEQHAVT--FSAG 461 (721)
Q Consensus 412 ~~~~~~---d~~iv~i~ad~~~~~~l-------------------------~~f~~~fp~R~~d~GIaE~~~v~--~AaG 461 (721)
.++++. .++||.+++|+..++|+ ..|+++||+|||++||+||+|++ +|+|
T Consensus 514 ~~L~k~~~~~~~iV~i~aDla~t~gm~~~f~~~~i~~~~gq~y~~~d~~~~~~yke~~pgR~ie~GIaEqnm~~~~~AAG 593 (896)
T PRK13012 514 GNLLKDKALGPRIVPIVADEARTFGMANLFRQVGIYSPLGQLYEPEDAGSLLYYREAKDGQILEEGITEAGAISSWIAAA 593 (896)
T ss_pred HHHHhccccCCCEEEeccccccccCcccccccccccccccccccccchhHHhhhhhCCCCcEEecchhhhhhhHHHHHHH
Confidence 999987 89999999999977766 23557899999999999999999 8898
Q ss_pred HHhC----CCeeEEEecHhh-HHHHHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEeeCC
Q 004968 462 LACG----GLKPFCIIPSAF-LQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSD 535 (721)
Q Consensus 462 lA~~----G~~p~~~tys~F-l~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~Psd 535 (721)
+|++ |++||+.+|++| .+|++||+++.++++..+|+++.+++|. +|.+|+|||..+|++++|.+||++|+.|+|
T Consensus 594 ~a~a~~G~g~iPf~~tfs~F~~~R~~Dqir~a~~~~~~~vlig~T~gg~tlg~dG~THQ~~eslal~RaIPN~~V~~PAD 673 (896)
T PRK13012 594 TSYSVHGLPMLPFYIYYSMFGFQRVGDLIWAAADQRARGFLLGATAGRTTLGGEGLQHQDGHSHLLASTIPNCRAYDPAF 673 (896)
T ss_pred hhHHhcCCCcEEEEEehHHHHHHHHHHHHHHHHhcccCCeEEEEeCcccccCCCCCCCcchHhHHHHHhCCCCEEEeCCC
Confidence 8777 679999999999 7999999999999999999999999998 799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh-----CCCCEEEEecCCCcccccCCCCCCcceecCceEEEE---eCCcEEEEEechhhHHHHHHHH
Q 004968 536 EDELVDMVATVASI-----DDRPVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLV---EGKDVALLGYGAMVQNCLKARA 607 (721)
Q Consensus 536 ~~E~~~~l~~a~~~-----~~~P~~ir~~r~~~~~~~~p~~~~~~~~~gk~~vl~---eG~dv~Iva~Gs~v~~al~Aa~ 607 (721)
+.|+..+++.++++ .+.|+|||+.|++.....+|......+..|+ ++++ +|.+++|+++|+++++|++|++
T Consensus 674 a~E~a~iv~~al~~m~~~~~~~p~YIrL~r~~~~~p~~~~~~~~~i~kG~-y~l~~~~~g~dv~LiasGs~v~eAl~AAe 752 (896)
T PRK13012 674 AYELAVIVDDGMRRMLEEQEDVFYYLTVMNENYAQPALPEGAEEGILKGM-YRLAAAAEAPRVQLLGSGAILREVLAAAR 752 (896)
T ss_pred HHHHHHHHHHHHHHHHhccCCCeEEEEecCCCCCCCCCCccchhccccCc-EEEeccCCCCCEEEEEecHHHHHHHHHHH
Confidence 99999999998743 2579999999988643234432123344555 6663 4679999999999999999999
Q ss_pred HHHhC-CCCeEEeecCccccccHHHHH-------------------HHhcc-CCeEEEEcCCCCCChHHHHHHHHHhcCC
Q 004968 608 LLSKL-GIDVTVADARFCKPLDIKLVR-------------------ELCQN-HTFLITVEEGSIGGFGSHVSHFIALDGL 666 (721)
Q Consensus 608 ~L~~~-Gi~v~VId~~~l~PlD~e~i~-------------------~l~~~-~~~vvvvEe~~~gG~gs~v~~~l~~~~~ 666 (721)
+|+++ ||+++|+|+.|++|||++.+. +++.. ...+|+++++.. .|++.+.+..
T Consensus 753 ~L~~e~GI~a~V~sv~S~kpLd~d~i~~E~hn~~gglg~~~~sy~~~~l~~~~~p~Va~~D~~~-----aVae~l~~~~- 826 (896)
T PRK13012 753 LLADDWGVDADVWSVTSFTELRRDGLAAERANLLGPAEEARVPYVTQCLAGTRGPVVAATDYVR-----AVPEQIRAFV- 826 (896)
T ss_pred HHHhhhCCCeEEEECCCCCHhHHHHHHHHHHhhcCCCccccccHHHHhhcccCCCeEEecchHH-----HHHHHHHHhC-
Confidence 99999 999999999999999999772 22222 235566665432 4555555432
Q ss_pred CCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhhc
Q 004968 667 LDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 712 (721)
Q Consensus 667 ~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~~ 712 (721)
+.+++++|+ |.|+.+|++++|+++||+|+++|+++++++|..
T Consensus 827 ---~~~~~~LGv-D~FG~Sg~~~~L~~~fGlda~~Iv~aal~~La~ 868 (896)
T PRK13012 827 ---PARYVTLGT-DGFGRSDTRAALRRFFEVDRHSIVLAALKALAD 868 (896)
T ss_pred ---CCCeEEEee-CCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 457889998 999999999999999999999999999998843
|
|
| >PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-77 Score=603.36 Aligned_cols=270 Identities=53% Similarity=0.853 Sum_probs=199.9
Q ss_pred cccCCCccccCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHHhC
Q 004968 82 LDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTG 161 (721)
Q Consensus 82 l~~i~~p~~~~~~~~~~l~~la~eiR~~~~~~~~~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltG 161 (721)
|++|++|.|||+|+.+||++||+|||++|++.++++|||++||||+|||++|||||||.|+|+||||+|||+|+||||||
T Consensus 1 L~~I~~p~dlk~ls~~eL~~La~eiR~~ii~~vs~~GGHl~snLGvVELTiALH~vFd~p~DkivwDvGHQ~Y~HKiLTG 80 (270)
T PF13292_consen 1 LDKINSPEDLKKLSIEELEQLAQEIREFIIETVSKTGGHLASNLGVVELTIALHYVFDSPKDKIVWDVGHQAYVHKILTG 80 (270)
T ss_dssp GGG-SSHHHHTTS-GGGHHHHHHHHHHHHHHHCTCCCSTHHHHHCCHHHHHHHHHHS-TTTSEEEESSSTT-HHHHHCTT
T ss_pred CCCCCCHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccHHHHHHHHHHHhCCCCCeEEEecccccchhhhccC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhc
Q 004968 162 RRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYL 241 (721)
Q Consensus 162 r~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~ 241 (721)
|+++|.|+||++|++|||+|.||+||.|++||+|++||+|+|||.|+++++++++||||||||||++||+|||||+|+..
T Consensus 81 R~~~f~TlRq~gGlSGF~~r~ES~~D~f~~GHsstsiSaa~Gma~ar~l~~~~~~vVaVIGDGalt~Gma~EALN~~g~~ 160 (270)
T PF13292_consen 81 RRDRFHTLRQYGGLSGFPKRSESEYDAFGAGHSSTSISAALGMAVARDLKGEDRKVVAVIGDGALTGGMAFEALNNAGHL 160 (270)
T ss_dssp TCCCGGGTTSTTS--SS--TTT-TT--S--SSSS-HHHHHHHHHHHHHHHTS---EEEEEETTGGGSHHHHHHHHHHHHH
T ss_pred cHHHhchhhhcCCcCCCCCcccCCCCcccCCccHhHHHHHHHHHHHHHhcCCCCcEEEEECCcchhHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCc
Q 004968 242 DSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQG 321 (721)
Q Consensus 242 ~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 321 (721)
+.|++||+|||+|+ |++|+|+++++|++++.++.|+++|+..+.+.+.+ .++.+..+++++.++.+ .+
T Consensus 161 ~~~liVILNDN~mS--------Is~nvGals~~L~~l~~~~~y~~~k~~~~~~l~~~-~~~~~~~~r~~~s~K~~-~~-- 228 (270)
T PF13292_consen 161 KSNLIVILNDNEMS--------ISPNVGALSKYLSKLRSSPTYNKLKEDVKSLLKKI-PPIEEFAKRIKESLKGF-SP-- 228 (270)
T ss_dssp T-SEEEEEEE-SBS--------SSB--SSHCCC-----------------------------------------------
T ss_pred CCCEEEEEeCCCcc--------cCCCcchHHHHHHhccchhHHHHHHHHHHHHHHhh-hHHHHHHHHHhhhhhhh-hH--
Confidence 99999999999994 78999999999999999999999999999999877 67788888999999987 42
Q ss_pred cceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEE
Q 004968 322 STLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVT 366 (721)
Q Consensus 322 ~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T 366 (721)
.+||++||+|+||+||||+++|+++|+++|+. ++|++|||.|
T Consensus 229 -~lFe~LG~~Y~GPiDGHdl~~Li~~l~~~K~~--~gPvllHV~T 270 (270)
T PF13292_consen 229 -NLFEELGFDYIGPIDGHDLEELIEVLENAKDI--DGPVLLHVIT 270 (270)
T ss_dssp -CCCHHCT-EEEEEEETT-HHHHHHHHHHHCCS--SSEEEEEEE-
T ss_pred -HHHHHcCCeEEeccCCCCHHHHHHHHHHHhcC--CCCEEEEEeC
Confidence 89999999999999999999999999999994 8999999998
|
|
| >COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-69 Score=545.85 Aligned_cols=304 Identities=35% Similarity=0.553 Sum_probs=289.7
Q ss_pred cccHHHHHHHHHHHHHHcCCCeEEEecCCCCccChHHHHHhCCCcEeeccccHHHHHHHHHHHHhCCCeeEEEecHhhHH
Q 004968 400 SRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQ 479 (721)
Q Consensus 400 ~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~tys~Fl~ 479 (721)
..+++++|+++|.+++++|++||+++||+.+++++..|.++||+||||+||+||.|+|+|+|+|++|++||+++|+.|+.
T Consensus 6 ~~~~R~~~g~~L~~l~~~~~diVvl~ADl~~St~~~~f~~~fPdR~~NvGIaEQ~mvg~AAGLA~~Gk~Pfv~tfa~F~s 85 (312)
T COG3958 6 TESLRKVYGETLAELGRKNSDIVVLDADLSSSTKTGYFAKEFPDRFFNVGIAEQDMVGTAAGLALAGKKPFVSTFAAFLS 85 (312)
T ss_pred chHHHHHHHHHHHHHHhcCCCEEEEecccccccchhHHHHhCchhheecchHHHHHHHHHHHHHhcCCCceeechHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred -HHHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEE
Q 004968 480 -RAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFR 557 (721)
Q Consensus 480 -ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir 557 (721)
|+||||++++|++++||.++++++|+ +|+||+|||..+|+++||.+||++|++|+|+.|++.++.++.+ .++|+|+|
T Consensus 86 ~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG~sHq~~EDiaimR~lpn~~V~~P~D~v~~~~i~~~~~~-~~GP~Y~R 164 (312)
T COG3958 86 RRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGSSHQALEDIAIMRGLPNMTVIAPADAVETRAILDQIAD-YKGPVYMR 164 (312)
T ss_pred HHHHHHHHHHhhhccCCeEEEEecCCcccCCCCccchhHHHHHHHhcCCCceEEccCcHHHHHHHHHHHHh-cCCCEEEE
Confidence 99999999999999999999999999 7999999999999999999999999999999999999999975 79999999
Q ss_pred ecCCCcccccCCCCCCcceecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhc
Q 004968 558 YPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQ 637 (721)
Q Consensus 558 ~~r~~~~~~~~p~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~ 637 (721)
+.|...+.. + +..++.|++||++++|+|+|++||++|.|+..+++||+.|+++||++.|||+.+|||+|++++.+.++
T Consensus 165 l~R~~~p~~-~-~~~~~~F~iGka~vLrdG~D~tiiA~G~mv~~al~AA~~L~~~GIsa~Vi~m~tIKPiD~~~i~~~A~ 242 (312)
T COG3958 165 LGRGKVPVV-V-DEGGYTFEIGKANVLRDGSDLTIIATGVMVAEALEAAEILKKEGISAAVINMFTIKPIDEQAILKAAR 242 (312)
T ss_pred ecCCCCCce-e-cCCCceEeccceeEeecCCceEEEecCcchHHHHHHHHHHHhcCCCEEEEecCccCCCCHHHHHHHHh
Confidence 999774421 2 23358999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHh
Q 004968 638 NHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLL 710 (721)
Q Consensus 638 ~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l 710 (721)
+++.|||+|||+ .||+|+.|++.+++++ +.+++++|+||+|+.+|+..+|+++||||+++|++++++++
T Consensus 243 ~t~~IvT~EeHsi~GGlGsaVAEvlse~~----p~~~~riGvp~~fg~sg~~~~Ll~~ygl~~~~I~~~v~~~~ 312 (312)
T COG3958 243 ETGRIVTAEEHSIIGGLGSAVAEVLSENG----PTPMRRIGVPDTFGRSGKADELLDYYGLDPESIAARVLELL 312 (312)
T ss_pred hcCcEEEEecceeecchhHHHHHHHHhcC----CcceEEecCCchhccccchHHHHHHhCCCHHHHHHHHHhhC
Confidence 999999999998 6999999999999987 68999999999999999999999999999999999998864
|
|
| >CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-60 Score=508.53 Aligned_cols=307 Identities=19% Similarity=0.280 Sum_probs=270.5
Q ss_pred cccHHHHHHHHHHHHHHcCCCeEEEecCCCCccC----hHHHHHhCCC-cEeeccccHHHHHHHHHHHHhCCCeeEEEe-
Q 004968 400 SRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLS----LQLFQEKFPE-RYFDVGMAEQHAVTFSAGLACGGLKPFCII- 473 (721)
Q Consensus 400 ~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~----l~~f~~~fp~-R~~d~GIaE~~~v~~AaGlA~~G~~p~~~t- 473 (721)
+.+++++|+++|.+++++||+++++++|++.++| +++|+++||+ ||||+||+||+|+++|+|||++|++||+++
T Consensus 3 ~~~~~~a~~~~L~~~~~~dp~iv~l~~d~~~~~g~~~~~~~f~~~fp~~R~~n~gIaEq~~vg~AaGlA~~G~~pvv~~~ 82 (327)
T CHL00144 3 EVFLFEALREAIDEEMARDPRVFVIGEDVGHYGGSYKVTKGLHEKYGDLRVLDTPIAENSFTGMAIGAAMTGLRPIVEGM 82 (327)
T ss_pred cchHHHHHHHHHHHHHhhCCCEEEEeCcccccCCchhHHHHHHHHCCCccEeeccccHHHHHHHHHHHHHCCCEEEEEee
Confidence 3688999999999999999999999999975555 6899999999 999999999999999999999999999985
Q ss_pred cHhhHHHHHHHHHHHhhcC--------CcceEEEEcCCCCcC-CCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHH
Q 004968 474 PSAFLQRAYDQVVNDVDQQ--------RLPVRFVITSAGLVG-SDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVA 544 (721)
Q Consensus 474 ys~Fl~ra~dqi~~~~a~~--------~lpVv~v~~~~G~~G-~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~ 544 (721)
|+.|++|+||||+|++|++ ++||+++ ++|+.| .+|+|||+..+ ++|+++|||+|++|+|+.|++.+++
T Consensus 83 ~~~f~~ra~dQi~~~~a~~~~~~gg~~~~~vv~~--~~g~~~~~~G~tHs~~~e-a~~~~iPgl~V~~Psd~~d~~~~l~ 159 (327)
T CHL00144 83 NMGFLLLAFNQISNNAGMLHYTSGGNFTIPIVIR--GPGGVGRQLGAEHSQRLE-SYFQSVPGLQIVACSTPYNAKGLLK 159 (327)
T ss_pred hhhHHHHHHHHHHHHHHHHhhccCCCccCCEEEE--ecCCCCCCCCccccccHH-HHHhcCCCCEEEEeCCHHHHHHHHH
Confidence 6788999999999999988 5566665 566644 79999977776 9999999999999999999999999
Q ss_pred HHHHhCCCCEEEEecCCCccc-ccCCCCCCcceecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCc
Q 004968 545 TVASIDDRPVCFRYPRGAIVR-TDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARF 623 (721)
Q Consensus 545 ~a~~~~~~P~~ir~~r~~~~~-~~~p~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ 623 (721)
+|++ .++|+|||+++..+.. .+++. +.+.+++||+.++++|+|++||+||.|+++|++|++.|+++||+++|||++|
T Consensus 160 ~a~~-~~~Pv~ire~~~l~~~~~~v~~-~~~~~~~Gk~~v~~~G~ditiia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~ 237 (327)
T CHL00144 160 SAIR-SNNPVIFFEHVLLYNLKEEIPD-NEYLLPLEKAEVVRPGNDITILTYSRMRHHVLQAVKVLVEKGYDPEIIDLIS 237 (327)
T ss_pred HHHh-CCCcEEEEEcHHhcCCCCCCCC-CCccccCCeeEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEecCc
Confidence 9986 6899999966554321 12332 3567889999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHhccCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCcccc-CCCHHHHHHHcCCCHHH
Q 004968 624 CKPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIE-HASPTQQLALAGLTGHH 701 (721)
Q Consensus 624 l~PlD~e~i~~l~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~-~g~~~~l~~~~gl~~~~ 701 (721)
|||||+++|.++++++++|||+|||. .||||++|++++.+++|...+.++++++++|.|++ +|..+++ +|||+++
T Consensus 238 ikPlD~~~i~~~~~~t~~vv~vEE~~~~gGlG~~va~~l~e~~f~~~~~pv~rl~~~d~~~~~~~~~~~~---~gl~~~~ 314 (327)
T CHL00144 238 LKPLDLGTISKSVKKTHKVLIVEECMKTGGIGAELIAQINEHLFDELDAPIVRLSSQDVPTPYNGPLEEA---TVIQPAQ 314 (327)
T ss_pred CCCCCHHHHHHHHHhhCcEEEEECCCCCCCHHHHHHHHHHHhchhhcCCCeEEEccCCCcCCCCccHHHH---hCCCHHH
Confidence 99999999999999999999999998 79999999999999985222568999999999998 5666554 5999999
Q ss_pred HHHHHHHHhhcch
Q 004968 702 IAATALSLLGRTR 714 (721)
Q Consensus 702 I~~~i~~~l~~~~ 714 (721)
|++++++++..+|
T Consensus 315 I~~~i~~~l~~~~ 327 (327)
T CHL00144 315 IIEAVEQIITNKK 327 (327)
T ss_pred HHHHHHHHHhccC
Confidence 9999999986654
|
|
| >PRK09212 pyruvate dehydrogenase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-59 Score=500.46 Aligned_cols=306 Identities=25% Similarity=0.358 Sum_probs=274.1
Q ss_pred cccHHHHHHHHHHHHHHcCCCeEEEecCCCCccC----hHHHHHhC-CCcEeeccccHHHHHHHHHHHHhCCCeeEEEec
Q 004968 400 SRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLS----LQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCIIP 474 (721)
Q Consensus 400 ~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~----l~~f~~~f-p~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~ty 474 (721)
..+|+++|+++|.+++++||+++++++|++.++| +++|+++| |+||||+|||||+|+++|+|||++|+|||+++|
T Consensus 3 ~~~~~~a~~~~L~~~~~~d~~iv~l~~d~~~~~g~~~~~~~~~~~fgp~R~~d~gIaE~~~vg~AaGlA~~G~~Piv~~~ 82 (327)
T PRK09212 3 QLTVREALRDAMQEEMERDPKVFLMGEEVGEYQGAYKVTQGLLEQFGPKRVIDTPITEHGFAGLAVGAAFAGLRPIVEFM 82 (327)
T ss_pred cchHHHHHHHHHHHHHHhCCCEEEEcCcccccCCcchhhHHHHHHhCCCceeecchhHHHHHHHHHHHHHcCCeeEEEee
Confidence 3589999999999999999999999999986666 38899999 999999999999999999999999999999998
Q ss_pred H-hhHHHHHHHHHHHhhcC--------CcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 004968 475 S-AFLQRAYDQVVNDVDQQ--------RLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVAT 545 (721)
Q Consensus 475 s-~Fl~ra~dqi~~~~a~~--------~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~ 545 (721)
+ +|++||||||+|++|++ ++|++++... |..|.+|+|||+..| ++||++|||+|++|+|+.|++.++++
T Consensus 83 ~~~f~~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~-g~~~~~G~tH~~~~e-a~~r~iP~l~V~~P~d~~e~~~~l~~ 160 (327)
T PRK09212 83 TFNFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPN-GAAARVAAQHSQCYA-AWYSHIPGLKVVAPYFAADCKGLLKT 160 (327)
T ss_pred hhhHHHHHHHHHHHHHHHHhhccCCCcCccEEEEeCC-CCCCCCCcccccCHH-HHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 7 78999999999999988 4677766544 556889999988888 99999999999999999999999999
Q ss_pred HHHhCCCCEEEEecCCCcccc-cCCCCCCcceecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCcc
Q 004968 546 VASIDDRPVCFRYPRGAIVRT-DLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFC 624 (721)
Q Consensus 546 a~~~~~~P~~ir~~r~~~~~~-~~p~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l 624 (721)
|++ .++|+||++++..+... ++++ +.+++++||++++++|+|++||+||+++..|++|++.|+++||+++|||+++|
T Consensus 161 a~~-~~~Pv~i~~~~~~~~~~~~~~~-~~~~~~~Gk~~vl~~G~di~iva~G~~~~~a~eAa~~L~~~Gi~v~vi~~~~l 238 (327)
T PRK09212 161 AIR-DPNPVIFLENEILYGHSHEVPE-EEESIPIGKAAILREGSDVTIVTFSIQVKLALEAAELLEKEGISVEVIDLRTL 238 (327)
T ss_pred HHh-CCCcEEEEEchhhcCCCCCCCC-CCccccCCeeEEEEeCCCEEEEEccHHHHHHHHHHHHHHhcCCcEEEEEEecC
Confidence 986 58999998876543321 2332 24678899999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHhccCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCC-CHHHH
Q 004968 625 KPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGL-TGHHI 702 (721)
Q Consensus 625 ~PlD~e~i~~l~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl-~~~~I 702 (721)
+|||+++|.+++++++.|||||||. .||||++|++++.++++.+.+.++++++.+|.|++.| ++++++|| ++++|
T Consensus 239 ~Pld~~~i~~~~~~~~~vv~vEe~~~~gGlg~~la~~l~~~~~~~~~~~i~r~~~~~~~~~~~---~~le~~~l~~~~~I 315 (327)
T PRK09212 239 RPLDTETIIESVKKTNRLVVVEEGWPFAGVGAEIAALIMKEAFDYLDAPVERVTGKDVPLPYA---ANLEKLALPSEEDI 315 (327)
T ss_pred CCCCHHHHHHHHHhCCeEEEEcCCCCCCCHHHHHHHHHHHhCccccCCCeEEEcCCCccCCch---HHHHHhcCCCHHHH
Confidence 9999999999999999999999998 7999999999999987644456899999999998865 79999998 99999
Q ss_pred HHHHHHHhhc
Q 004968 703 AATALSLLGR 712 (721)
Q Consensus 703 ~~~i~~~l~~ 712 (721)
++++++++++
T Consensus 316 ~~~i~~~~~~ 325 (327)
T PRK09212 316 IEAVKKVCYR 325 (327)
T ss_pred HHHHHHHHhh
Confidence 9999998854
|
|
| >PLN02683 pyruvate dehydrogenase E1 component subunit beta | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-58 Score=495.67 Aligned_cols=308 Identities=24% Similarity=0.333 Sum_probs=269.8
Q ss_pred cccHHHHHHHHHHHHHHcCCCeEEEecCCCCccC----hHHHHHhC-CCcEeeccccHHHHHHHHHHHHhCCCeeEEEe-
Q 004968 400 SRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLS----LQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCII- 473 (721)
Q Consensus 400 ~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~----l~~f~~~f-p~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~t- 473 (721)
..+|+++|+++|.+++++||+++++++|++.+.+ +++|.++| |+||||+|||||+|+++|+|||++|+|||+++
T Consensus 26 ~~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~~~~~~~l~~~~~P~R~~d~GIAEq~~vg~AaGlA~~G~~P~v~~~ 105 (356)
T PLN02683 26 EMTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAYKITKGLLQKYGPDRVLDTPITEAGFTGIGVGAAYAGLKPVVEFM 105 (356)
T ss_pred ccHHHHHHHHHHHHHHhhCcCEEEEccccccccCccchhhhHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEEe
Confidence 4689999999999999999999999999976555 46777777 99999999999999999999999999999998
Q ss_pred cHhhHHHHHHHHHHHhhcCC--------cceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 004968 474 PSAFLQRAYDQVVNDVDQQR--------LPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVAT 545 (721)
Q Consensus 474 ys~Fl~ra~dqi~~~~a~~~--------lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~ 545 (721)
|++|++|+||||+|++|+++ +||++++.+++..| +|+|||+.+ +++||++|||+|++|+|+.|++.++++
T Consensus 106 ~~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~G~~~g-~G~tH~~~~-~a~lr~iPnl~V~~Pad~~e~~~~l~~ 183 (356)
T PLN02683 106 TFNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAG-VGAQHSQCF-AAWYSSVPGLKVLAPYSSEDARGLLKA 183 (356)
T ss_pred hhhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeCCCCCC-CCCccccCH-HHHHhcCCCCEEEEeCCHHHHHHHHHH
Confidence 47789999999999999888 99999998844356 699999888 599999999999999999999999999
Q ss_pred HHHhCCCCEEEEecCCCcccc-cCCC---CCCcceecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeec
Q 004968 546 VASIDDRPVCFRYPRGAIVRT-DLPG---YRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADA 621 (721)
Q Consensus 546 a~~~~~~P~~ir~~r~~~~~~-~~p~---~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~ 621 (721)
|++ .++|+|||+++...... +... .+.+.+++||++++++|+|++||++|+++..|++|++.|+++||+++|||+
T Consensus 184 a~~-~~gPv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~r~G~dvtIia~G~~v~~Al~Aa~~L~~~GI~v~VId~ 262 (356)
T PLN02683 184 AIR-DPDPVVFLENELLYGESFPVSAEVLDSSFVLPIGKAKIEREGKDVTIVAFSKMVGYALKAAEILAKEGISAEVINL 262 (356)
T ss_pred HHh-CCCcEEEEEehhhccCCCCCCCCCCCccccccCCeeEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 985 67999999754332111 1111 113567899999999999999999999999999999999999999999999
Q ss_pred CccccccHHHHHHHhccCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCC-CH
Q 004968 622 RFCKPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGL-TG 699 (721)
Q Consensus 622 ~~l~PlD~e~i~~l~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl-~~ 699 (721)
+|+||||+++|.+++++++.|||+|||. .||||++|++++.+++|...+.+++++|++|.++ +.+..++.+++ ++
T Consensus 263 ~~ikPlD~~~l~~~~~~t~~vvtvEE~~~~GGlGs~Va~~l~e~~f~~~~~~v~rlg~~d~~~---p~~~~le~~~~p~~ 339 (356)
T PLN02683 263 RSIRPLDRDTINASVRKTNRLVTVEEGWPQHGVGAEICASVVEESFDYLDAPVERIAGADVPM---PYAANLERLALPQV 339 (356)
T ss_pred CCCCccCHHHHHHHHhhcCeEEEEeCCCcCCCHHHHHHHHHHHhchhccCCCeEEeccCCcCC---CccHHHHHhhCCCH
Confidence 9999999999999999999999999998 7999999999999998632356899999999755 45677888888 99
Q ss_pred HHHHHHHHHHhhcc
Q 004968 700 HHIAATALSLLGRT 713 (721)
Q Consensus 700 ~~I~~~i~~~l~~~ 713 (721)
++|++++++++.++
T Consensus 340 ~~i~~a~~~~~~~~ 353 (356)
T PLN02683 340 EDIVRAAKRACYRS 353 (356)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999654
|
|
| >PRK11892 pyruvate dehydrogenase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-57 Score=503.55 Aligned_cols=306 Identities=23% Similarity=0.303 Sum_probs=273.4
Q ss_pred cccHHHHHHHHHHHHHHcCCCeEEEecCCCCccC----hHHHHHhC-CCcEeeccccHHHHHHHHHHHHhCCCeeEEEec
Q 004968 400 SRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLS----LQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCIIP 474 (721)
Q Consensus 400 ~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~----l~~f~~~f-p~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~ty 474 (721)
..+++++|+++|.+++++|++++++++|++...| .++|.++| |+||||+||+||+|+|+|+|||++|+|||+++|
T Consensus 141 ~~~~r~a~~~al~~~~~~d~~vv~i~~Dv~~~~ga~~~t~~l~~~fgp~R~id~gIaEq~~vg~AaGlA~~G~rPiv~~~ 220 (464)
T PRK11892 141 TMTVREALRDAMAEEMRRDEDVFVMGEEVAEYQGAYKVTQGLLQEFGARRVIDTPITEHGFAGIGVGAAFAGLKPIVEFM 220 (464)
T ss_pred chHHHHHHHHHHHHHHhhCcCEEEEeCCccccCCccccchHHHHHhCccceeecCccHHHHHHHHHHHHhCCCEEEEEEe
Confidence 4689999999999999999999999999976666 47899999 999999999999999999999999999999985
Q ss_pred -HhhHHHHHHHHHHHhh--------cCCcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 004968 475 -SAFLQRAYDQVVNDVD--------QQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVAT 545 (721)
Q Consensus 475 -s~Fl~ra~dqi~~~~a--------~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~ 545 (721)
++|++|+||||+|++| ++++||+|++..+|..+ .|+ ||+++|+++|+++|||+|++|+|+.|++.++++
T Consensus 221 ~~~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~-~G~-hhs~~d~a~~~~iPgl~V~~P~d~~d~~~ll~~ 298 (464)
T PRK11892 221 TFNFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAAR-VAA-QHSQDYAAWYSHIPGLKVVAPYSAADAKGLLKA 298 (464)
T ss_pred hHHHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCC-CCC-ccccCHHHHHhhCCCCEEEEeCCHHHHHHHHHH
Confidence 7789999999999999 89999999988766655 677 999999999999999999999999999999999
Q ss_pred HHHhCCCCEEEEecCCCcccc-cCCCCCCcceecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCcc
Q 004968 546 VASIDDRPVCFRYPRGAIVRT-DLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFC 624 (721)
Q Consensus 546 a~~~~~~P~~ir~~r~~~~~~-~~p~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l 624 (721)
|++ .++|+||+.++..+... ++|..+++.+++||++++|+|+|++||+||+++..|++|++.|+++||+++|||+|||
T Consensus 299 ai~-~~~Pv~ile~~~ry~~~~~vp~~~~~~~~~Gka~v~r~G~DvtIva~G~~v~~Al~Aa~~L~~~GI~~~VIdl~tl 377 (464)
T PRK11892 299 AIR-DPNPVIFLENEILYGQSFDVPKLDDFVLPIGKARIHREGKDVTIVSFSIGMTYALKAAEELAKEGIDAEVIDLRTI 377 (464)
T ss_pred Hhh-CCCcEEEEechhhcCCCCCCCCcCCccccCceEEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 985 68999994433222111 2343335678899999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHhccCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCC-CHHHH
Q 004968 625 KPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGL-TGHHI 702 (721)
Q Consensus 625 ~PlD~e~i~~l~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl-~~~~I 702 (721)
+|||+++|.++++++++|||+|||+ .||||++|++++.+++|...+.++++++++|.|.+ ++.++++++| ++++|
T Consensus 378 kPlD~~~i~~sv~kt~~vvtvEE~~~~gGlG~~va~~l~e~~f~~l~~pv~ri~~~d~~~~---~~~~le~~~l~~~~~I 454 (464)
T PRK11892 378 RPMDTETIVESVKKTNRLVTVEEGWPQSGVGAEIAARVMEQAFDYLDAPVLRVTGKDVPMP---YAANLEKLALPSVAEV 454 (464)
T ss_pred CcCCHHHHHHHHHhcCeEEEEeCCCcCCcHHHHHHHHHHHhCccccCCCeEEeccCCccCC---cHHHHHHhcCCCHHHH
Confidence 9999999999999999999999998 79999999999999986333568999999999875 6789999998 99999
Q ss_pred HHHHHHHhh
Q 004968 703 AATALSLLG 711 (721)
Q Consensus 703 ~~~i~~~l~ 711 (721)
++++++++-
T Consensus 455 v~av~~~~~ 463 (464)
T PRK11892 455 VEAVKAVCY 463 (464)
T ss_pred HHHHHHHhh
Confidence 999998763
|
|
| >PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-56 Score=484.21 Aligned_cols=307 Identities=25% Similarity=0.376 Sum_probs=269.7
Q ss_pred CcccHHHHHHHHHHHHHHcCCCeEEEecCCC--Cc-cC-hHHHHHhC-CCcEeeccccHHHHHHHHHHHHhCCCeeEEEe
Q 004968 399 YSRTYDDCFIEALVMEAEKDKDIVVVHAGME--MD-LS-LQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCII 473 (721)
Q Consensus 399 ~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~--~~-~~-l~~f~~~f-p~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~t 473 (721)
...+|+++|+++|.+++++||+++++++|++ |+ ++ +++|+++| |+||||+||+||+|+++|+|||++|++||+++
T Consensus 33 ~~~~~~~~~~~~L~~~~~~d~~iv~l~~D~~~~G~~~~~~~~f~~~fgP~R~id~GIaEq~~vg~AaGlA~~G~~Pvv~~ 112 (355)
T PTZ00182 33 VKMNVREAINSALDEELARDPKVFVLGEDVAQYGGVYKCTKGLLDKYGPDRVFDTPITEQGFAGFAIGAAMNGLRPIAEF 112 (355)
T ss_pred cchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCchhhhHHHHHHhCCCceeecCccHHHHHHHHHHHHhCCCEEEEEe
Confidence 3468999999999999999999999999987 12 33 68999999 99999999999999999999999999999998
Q ss_pred -cHhhHHHHHHHHHHHhhcC--------CcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHH
Q 004968 474 -PSAFLQRAYDQVVNDVDQQ--------RLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVA 544 (721)
Q Consensus 474 -ys~Fl~ra~dqi~~~~a~~--------~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~ 544 (721)
|++|++|++|||+|++|++ ++|++++. ++|.+|.+|+||++..+ ++|+++|||+|++|+|+.|++.+++
T Consensus 113 ~fa~Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~-~~g~~g~~G~tHs~~~e-a~lr~iPn~~V~~Psd~~e~~~~l~ 190 (355)
T PTZ00182 113 MFADFIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRG-PNGAVGHGGAYHSQSFE-AYFAHVPGLKVVAPSDPEDAKGLLK 190 (355)
T ss_pred chhhHHHHHHHHHHHHHHHhhcccCCCccCCEEEEe-CCCCCCCCCCcccchHH-HHHhcCCCCEEEeeCCHHHHHHHHH
Confidence 7999999999999999986 46666653 44457899999977777 9999999999999999999999999
Q ss_pred HHHHhCCCCEEEEecCCCccc-ccCCCCCCcceecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCc
Q 004968 545 TVASIDDRPVCFRYPRGAIVR-TDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARF 623 (721)
Q Consensus 545 ~a~~~~~~P~~ir~~r~~~~~-~~~p~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ 623 (721)
++++ .++|+||++|+..... .+....+.+.+++||++++++|+|++||+||+++..|++|++.|+++||+++|||+++
T Consensus 191 ~a~~-~~~P~~i~~p~~l~r~~~~~~~~~~~~~~~Gk~~vl~~G~di~Iia~Gs~~~~aleAa~~L~~~Gi~v~vI~~~~ 269 (355)
T PTZ00182 191 AAIR-DPNPVVFFEPKLLYRESVEVVPEADYTLPLGKAKVVREGKDVTIVGYGSQVHVALKAAEELAKEGISCEVIDLRS 269 (355)
T ss_pred HHHh-CCCcEEEEeehHHhCCCCCCCCcccccccCCcceEecCCCCEEEEEeCHHHHHHHHHHHHHHhCCCcEEEEEEee
Confidence 9986 5899999988764321 1111122467789999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHhccCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHH
Q 004968 624 CKPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHI 702 (721)
Q Consensus 624 l~PlD~e~i~~l~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I 702 (721)
+||||++.|.+++++++.||||||+. .||||++|++++.++++...+.++++++++|.|++++.. +.+.+.+++++|
T Consensus 270 l~Pld~e~i~~~~~~~~~IvvvEE~~~~GGlG~~Va~~l~e~~~~~l~~pv~ri~~~d~~~p~~~~--le~~~~~~~~~i 347 (355)
T PTZ00182 270 LRPWDRETIVKSVKKTGRCVIVHEAPPTCGIGAEIAAQIMEDCFLYLEAPIKRVCGADTPFPYAKN--LEPAYLPDKEKV 347 (355)
T ss_pred CCCCCHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHhhhhhcCCCeEEeCCCCccCCCChH--HHHHhCCCHHHH
Confidence 99999999999999999999999998 799999999999998753234689999999999987653 677889999999
Q ss_pred HHHHHHHh
Q 004968 703 AATALSLL 710 (721)
Q Consensus 703 ~~~i~~~l 710 (721)
++++.+++
T Consensus 348 ~~~~~~~~ 355 (355)
T PTZ00182 348 VEAAKRVL 355 (355)
T ss_pred HHHHHHhC
Confidence 99998764
|
|
| >TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-53 Score=490.58 Aligned_cols=582 Identities=15% Similarity=0.179 Sum_probs=423.1
Q ss_pred HHHHHHHHHHHHHHhHhc-C------CCCCCCcccHHHHHHHHhc-ccCC-C----CcEEEecCCchH---HHHHHHhCc
Q 004968 99 LKQLAVEIRSELSSIVSK-T------EKSLKSSLAAVELTVALHH-VFHA-P----VDKILWDVGEQT---YAHKILTGR 162 (721)
Q Consensus 99 l~~la~eiR~~~~~~~~~-~------~Gh~~sslg~vel~~aL~~-vf~~-p----~D~iv~d~GH~~---y~h~~ltGr 162 (721)
.++++..+|..++.++.+ + +||+++++|++++..+||+ +|+. | +| +|+++||.+ |+...+.|+
T Consensus 75 e~~i~~~iR~~ai~MV~~A~~~~~~vgGHigsslS~adIl~vLy~~~lr~~~~~~~rD-~VlSKGHasp~lYA~L~l~G~ 153 (885)
T TIGR00759 75 ERRIRSIIRWNAIAMVLRANKKDLGLGGHISTYASAATLYEVGFNHFFRGHSEGGGGD-LVFFQGHAAPGIYARAFLEGR 153 (885)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCCCcCCcHHHHHHHHHHHHHhcCCCCCCCCCC-EEEECCcHHHHHHHHHHHcCC
Confidence 456679999999999974 4 6999999999999999995 4552 2 68 488899999 898999997
Q ss_pred --hhhhHHHHh---hCCCCCCCCCCC-CCCCCcCcCCCcchHHHHHHHHHHHHH-------cCCCCeEEEEEcCCCcccc
Q 004968 163 --RSLIHTLRK---KDGISGYTSRSE-SEYDPFNAGHGCNSVSAGLGMAVARDI-------KGKRECIVTVISNGTTMAG 229 (721)
Q Consensus 163 --~~~~~~~r~---~ggl~G~~~~~e-s~~d~~~~G~~G~~is~A~G~AlA~~l-------~g~~~~VvaviGDGal~~G 229 (721)
.+++.++|+ .+++++||++.. +.+..|.||++|+|++.|+|+|++.|+ +..+++|+|++|||+++||
T Consensus 154 ls~e~L~~FRq~~~g~gL~shPhp~~~p~~ve~sTGSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvllGDGEldEG 233 (885)
T TIGR00759 154 LTEEQLDNFRQEVQGDGLSSYPHPWLMPDFWQFPTVSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAFLGDGEMDEP 233 (885)
T ss_pred CCHHHHHHhcCCCCCCCCCCCCCcCcCCCCEEeCCCCccHHHHHHHHHHHHHHHHHhhccCCCCCceEEEEEcchhhccH
Confidence 778999999 356899998765 334679999999999999999999996 5678999999999999999
Q ss_pred hHHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhcc-Ccch-----
Q 004968 230 QAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRI-GRGM----- 302 (721)
Q Consensus 230 ~~~Ealn~A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~-g~~~----- 302 (721)
.+|||+..|++++ .|||+|+|+|+++ ++.++....+.+++ .-.+++..++.+.+.. |...
T Consensus 234 ~swEA~~~Aa~~kLdNLi~IVD~N~~q--------lDG~v~~~~~i~e~-----le~~F~a~GW~Vi~V~wg~~wd~lf~ 300 (885)
T TIGR00759 234 ESKGAITFAAREKLDNLTFVINCNLQR--------LDGPVRGNGKIIQE-----LESLFRGAGWNVIKVLWGSEWDALLA 300 (885)
T ss_pred HHHHHHHHHHHhCCCCEEEEEeCCCCc--------cCCccccccccchh-----HHHHHHhcCCEEEEEecCccchHhhc
Confidence 9999999999999 7999999999984 23232211111111 1223344445444431 1000
Q ss_pred ----HHHHHHHHHHhhc---------------ccCCC---ccceeeeeC---ceEEeccCCCCHHHHHHHHHHHHhcCCC
Q 004968 303 ----HEWAAKVDEYARG---------------MIGPQ---GSTLFEELG---LYYIGPVDGHNIEDLISVLQEVASLGSM 357 (721)
Q Consensus 303 ----~~~~~~~~~~~~~---------------~~~~~---~~~l~ea~G---~~~~g~vdGhd~~~l~~al~~a~~~~~~ 357 (721)
..+.+++++.+.+ -+-+. ...+.+.+. +... ..+|||+++|.+|++++++. .+
T Consensus 301 ~d~~g~L~~~m~~~~dg~yq~~~~~~Ga~~R~~ffg~~~~l~~lv~~~sD~~i~~l-~rgGHD~~~I~~A~~~A~~~-~g 378 (885)
T TIGR00759 301 RDTSGVLVKLMNETVDGDYQTYKAKDGAYVREHFFNRTPELKALVADMSDADIWAL-NRGGHDPRKVYAAYAAAQEH-KG 378 (885)
T ss_pred CCCccHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhccchhhhhhc-cCCCCCHHHHHHHHHHHHhC-CC
Confidence 0111111111111 00000 000011000 0000 23799999999999888764 36
Q ss_pred CCEEEEEEEeccCCCcccccccccccccccCC--------------------------C---CCC---------------
Q 004968 358 GPVLVHVVTEENRRAEDTQKSEAIEKQQEGAS--------------------------D---SNS--------------- 393 (721)
Q Consensus 358 ~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~~--------------------------f---~~g--------------- 393 (721)
+|++|.++|+||+|.+++.+ +..++|+..+ | +.+
T Consensus 379 rPTvIlA~TvKG~G~~~~~e--~~n~~H~~k~l~~e~l~~~r~~~g~~~~d~~~~~~~~~~~~~~s~e~~y~~~rr~~Lg 456 (885)
T TIGR00759 379 QPTVILAKTIKGYGMGDAAE--SRNTAHQVKKLEVDALKNFRDRFELPLSDAQVEELPYYHPGEGSPEVRYLLARRQALG 456 (885)
T ss_pred CCEEEEEeeeecCCCChhhC--CCcccccCCCCCHHHHHHHHHHcCCCCChhHhccCCCcCCCCCCHHHHHHHHHHHHhC
Confidence 89999999999999984433 5789997421 1 000
Q ss_pred ----------CCC--C-------------CCcccHHHHHHHHHHHHHHc---CCCeEEEecCCCCccChHHHHHh-----
Q 004968 394 ----------LPF--G-------------NYSRTYDDCFIEALVMEAEK---DKDIVVVHAGMEMDLSLQLFQEK----- 440 (721)
Q Consensus 394 ----------~~~--~-------------~~~~~~~~~~~~~L~~~~~~---d~~iv~i~ad~~~~~~l~~f~~~----- 440 (721)
.++ + ....+.+.+|++.|..+++. .++||-|.+|...++||+++..+
T Consensus 457 g~~p~R~~~~~~l~vP~l~~~~~~~~~~~~~~~STt~afvr~l~~L~r~~~~g~riVpi~pDeartfgm~g~f~~~gIy~ 536 (885)
T TIGR00759 457 GYLPARRTFAEHLTVPALEFFGALLKGSGEREVSTTMAFVRILNKLLKDKEIGKRIVPIVPDEARTFGMEGLFRQIGIYS 536 (885)
T ss_pred CCCCCcCCCCCCCCCCCchhhHHHhcCCCCCCccHHHHHHHHHHHHhcCcccccceeecCCCccccCChHHhhcccCccC
Confidence 000 0 12357789999999988864 25699999999999999776543
Q ss_pred --------------------CCCcEeeccccHHHHHH--HHHHHHhC--C--CeeEEEecHhh-HHHHHHHHHHHhhcCC
Q 004968 441 --------------------FPERYFDVGMAEQHAVT--FSAGLACG--G--LKPFCIIPSAF-LQRAYDQVVNDVDQQR 493 (721)
Q Consensus 441 --------------------fp~R~~d~GIaE~~~v~--~AaGlA~~--G--~~p~~~tys~F-l~ra~dqi~~~~a~~~ 493 (721)
-.+|.++.||+|.++++ +|+|.|.+ | +.||.-.|++| +||..|.+ ..++.|.
T Consensus 537 ~~gq~y~p~d~~~~~~y~e~~~Gq~le~GI~E~g~~~~~~aagtsys~~g~~miP~yi~YsmFgfqR~gD~~-waa~d~~ 615 (885)
T TIGR00759 537 PHGQTYTPVDADSLLAYKESKDGQILQEGINEAGAMASWIAAATSYATHGEPMIPFYIYYSMFGFQRIGDLC-WAAADQR 615 (885)
T ss_pred CCCccCCccchhhhhhcccCCCCcchhhhhhhHHHHHHHHHHHhHHhhCCCeeeeeeEeeccccccchHHHH-HHHhhhc
Confidence 13699999999999988 56777665 6 78999999999 99999976 5778899
Q ss_pred cceEEEEcCCCC-c-CCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHh---CCCCEEEEecC--CCcccc
Q 004968 494 LPVRFVITSAGL-V-GSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYPR--GAIVRT 566 (721)
Q Consensus 494 lpVv~v~~~~G~-~-G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~---~~~P~~ir~~r--~~~~~~ 566 (721)
..-.+++..+|. + ...|-+||...-..+...+||++-|.|+...|+..++..++.+ ....+|++++- .++...
T Consensus 616 argfl~g~taGrtTL~gEGlqHqdg~s~~~~~~~P~~~~ydPafa~Ela~i~~~g~~rm~~~~~~v~yylt~~ne~~~qp 695 (885)
T TIGR00759 616 ARGFLLGATAGRTTLNGEGLQHEDGHSLLQAATIPNCIAYDPAFAYEVAVIMEDGLRRMYGEQEDVFYYVTVMNENYVQP 695 (885)
T ss_pred CCceEeccCCCcccCCCccccCccccchHHHhcCCCceeecCchHHHHHHHHHHHHHHHhhCCCCEEEEEEecCCCCCCC
Confidence 999999999998 2 4568899988877788899999999999999999999999874 34578888776 333222
Q ss_pred cCCCCCCccee-cCceEEEEeC------CcEEEEEechhhHHHHHHHHHHHhC-CCCeEEeecCccccccHHHH------
Q 004968 567 DLPGYRGIPIE-IGKGKVLVEG------KDVALLGYGAMVQNCLKARALLSKL-GIDVTVADARFCKPLDIKLV------ 632 (721)
Q Consensus 567 ~~p~~~~~~~~-~gk~~vl~eG------~dv~Iva~Gs~v~~al~Aa~~L~~~-Gi~v~VId~~~l~PlD~e~i------ 632 (721)
..|+ +..-. +...|.++++ .+|.|+++|+.++++++|+++|+++ |+.++|+++.+..-|..+..
T Consensus 696 ~~p~--~~~egIlkG~Y~l~~~~~~~~~~~VqLlgSG~il~evl~Aa~lL~~~~gV~adVwSvTS~~eL~Rd~~~~eR~n 773 (885)
T TIGR00759 696 PMPE--GAEEGILKGLYRFETSTEEKAKGHVQLLGSGAIMRAVIEAAQLLAADWGVASDVWSVTSFTELARDGHDVERWN 773 (885)
T ss_pred CCCc--chHHhHHhCceecccCCCCCCCccEEEEeccHHHHHHHHHHHHHHHHHCCCCcEEECCCHHHHHHhHHHHHHHH
Confidence 2221 11111 2234666652 4799999999999999999999986 99999999999888776633
Q ss_pred -------------HH-HhccCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCC
Q 004968 633 -------------RE-LCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLT 698 (721)
Q Consensus 633 -------------~~-l~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~ 698 (721)
.+ +......||++-|... -+...|..++ +.++..+|. |.|+.+++.++++++|++|
T Consensus 774 ~lhP~~~~r~~~v~~~L~~~~gP~va~tDy~~-~~~~qir~~v--------p~~~~~LGt-DgFGrSdtr~~lr~~fevD 843 (885)
T TIGR00759 774 LLHPTETPRVSYVAQVLNEADAPVIASTDYVR-AFAEQIRPYV--------PRKYVTLGT-DGFGRSDTRENLRHFFEVD 843 (885)
T ss_pred hcCCCCCccccHHHHHhccCCCCEEEEccchh-hhHHHHhhhc--------CCCceEecC-CCCCCCCCHHHHHHHcCCC
Confidence 11 1122346777777631 1233333322 457888997 9999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 004968 699 GHHIAATALSLLG 711 (721)
Q Consensus 699 ~~~I~~~i~~~l~ 711 (721)
+++|+.++++.|.
T Consensus 844 a~~IV~AAL~aL~ 856 (885)
T TIGR00759 844 AKSVVLAALYALA 856 (885)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999884
|
WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity. |
| >COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-53 Score=429.98 Aligned_cols=305 Identities=26% Similarity=0.392 Sum_probs=272.9
Q ss_pred ccHHHHHHHHHHHHHHcCCCeEEEecCCC---CccCh-HHHHHhCCC-cEeeccccHHHHHHHHHHHHhCCCeeEEEe-c
Q 004968 401 RTYDDCFIEALVMEAEKDKDIVVVHAGME---MDLSL-QLFQEKFPE-RYFDVGMAEQHAVTFSAGLACGGLKPFCII-P 474 (721)
Q Consensus 401 ~~~~~~~~~~L~~~~~~d~~iv~i~ad~~---~~~~l-~~f~~~fp~-R~~d~GIaE~~~v~~AaGlA~~G~~p~~~t-y 474 (721)
.++++|++++|.++|++|++|+++++|++ |.++. .+++++|++ |+||++|+|.+++|+|.|+|+.|+||++++ |
T Consensus 2 ~~~~eAi~~Am~~eM~rD~~V~v~GEDVg~~GGvf~~T~GL~~kfG~~RV~DTPiaE~gi~G~avGaA~~GlrPivEiqf 81 (324)
T COG0022 2 MTMIEAINEAMDEEMERDERVVVLGEDVGVYGGVFRVTKGLQEKFGEERVIDTPIAESGIAGIAVGAALTGLRPIVEIQF 81 (324)
T ss_pred ccHHHHHHHHHHHHHhcCCCEEEEcccccccCChhhhchhHHHHhCccceecCccchhhhHHHHHHHHHcCCcceEEEEe
Confidence 57899999999999999999999999986 23443 789999975 999999999999999999999999999998 9
Q ss_pred HhhHHHHHHHHHHHhhc--------CCcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHH
Q 004968 475 SAFLQRAYDQVVNDVDQ--------QRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATV 546 (721)
Q Consensus 475 s~Fl~ra~dqi~~~~a~--------~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a 546 (721)
.+|+..|+|||+|.+++ ..+|+++....+|..+ .|.+|++..+ +||.++||++|++|++|.|++++|+.|
T Consensus 82 ~dF~~~a~dqi~n~aAk~ryrsgG~~~~PiviR~p~G~g~~-~~~~HSqs~e-a~f~h~PGlKVV~PStpyDAKGLL~aA 159 (324)
T COG0022 82 ADFIYPAFDQIVNQAAKIRYRSGGQFTVPIVIRTPNGGGIG-GGAQHSQSLE-ALFAHIPGLKVVMPSTPYDAKGLLKAA 159 (324)
T ss_pred cchhHHHHHHHHHHHHHHhhhcCCceeCCEEEEcCCCCCCC-chhhccCCHH-HHHhcCCCceEEecCChHHHHHHHHHH
Confidence 99999999999999985 3789999987766554 5789999998 899999999999999999999999999
Q ss_pred HHhCCCCEEEEecCCCcc--cccCCCCCCcceecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCcc
Q 004968 547 ASIDDRPVCFRYPRGAIV--RTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFC 624 (721)
Q Consensus 547 ~~~~~~P~~ir~~r~~~~--~~~~p~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l 624 (721)
++ +++||+|+.++..+. ..++|+ ++|.+|+||+.+.|+|+|+|||+||.|++.+++||++|+++||+++|||+|||
T Consensus 160 Ir-d~dPViflE~k~lY~~~~~eVP~-~~Y~iPlGkA~i~reG~DvTivtyg~mv~~al~AAe~l~~~Gis~EVIDLRTl 237 (324)
T COG0022 160 IR-DPDPVIFLEHKRLYRSFKGEVPE-EDYTIPLGKAKIVREGSDVTIVTYGAMVHTALEAAEELEKEGISAEVIDLRTL 237 (324)
T ss_pred hc-CCCCEEEEecHHHhcccccCCCC-CCccccccceeeEecCCceEEEEechHHHHHHHHHHHHhhcCCCeEEEecccc
Confidence 86 899999999987653 246774 47899999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHhccCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHH
Q 004968 625 KPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIA 703 (721)
Q Consensus 625 ~PlD~e~i~~l~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~ 703 (721)
+|||.++|.++++|++++++|||.. ++|+|++|++.+.++.|.+.+.++.+++.+|...+.. ..+.+.+-.+++.|.
T Consensus 238 ~PlD~etIi~SvkKTgR~viV~Ea~~~~g~gaei~A~i~e~~f~~LdAPi~Rv~g~d~P~p~~--~~lE~~~lp~~~~I~ 315 (324)
T COG0022 238 SPLDKETIIASVKKTGRLVIVHEAPKTGGIGAEIAALIAEEAFDYLDAPILRVAGPDTPVPYS--AALEKAYLPNPERIV 315 (324)
T ss_pred CccCHHHHHHHHHhhCcEEEEEeccccCChHHHHHHHHHHHHHHhhcCchhhhcCCCCCCCcc--hhHHhhhCCCHHHHH
Confidence 9999999999999999999999887 8999999999999998866677889999999887643 234445667999999
Q ss_pred HHHHHHhh
Q 004968 704 ATALSLLG 711 (721)
Q Consensus 704 ~~i~~~l~ 711 (721)
+++++++.
T Consensus 316 ~av~~v~~ 323 (324)
T COG0022 316 AAVKKVLE 323 (324)
T ss_pred HHHHHHhh
Confidence 99999874
|
|
| >KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-44 Score=355.14 Aligned_cols=307 Identities=22% Similarity=0.335 Sum_probs=262.6
Q ss_pred CcccHHHHHHHHHHHHHHcCCCeEEEecCCC---CccCh-HHHHHhCC-CcEeeccccHHHHHHHHHHHHhCCCeeEEEe
Q 004968 399 YSRTYDDCFIEALVMEAEKDKDIVVVHAGME---MDLSL-QLFQEKFP-ERYFDVGMAEQHAVTFSAGLACGGLKPFCII 473 (721)
Q Consensus 399 ~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~---~~~~l-~~f~~~fp-~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~t 473 (721)
+..+.++|+.++|.+++++|+++++++++++ |+.++ .++.++|. .|++|++|+|.+..|+|.|+|+.|+||+|+.
T Consensus 33 ~~mtvreALn~amdEEm~rD~~VfvmGEeV~qy~GaykvtkGL~~K~G~~RV~DTPItE~gFtG~avGAA~~GLrPi~ef 112 (359)
T KOG0524|consen 33 KEMTVREALNQAMDEEMDRDPRVFVMGEEVGQYGGAYKVTKGLLDKFGDKRVLDTPITEMGFTGIAVGAAMAGLRPICEF 112 (359)
T ss_pred eeeeHHHHHHHHHHHHhccCCcEEEechhhhhcCCeeehhhhHHHhcCCceeecCcchhcccchhhHhHHHhCcchhhhh
Confidence 3478899999999999999999999999976 44555 67888885 5999999999999999999999999999996
Q ss_pred -cHhhHHHHHHHHHHHhhc--------CCcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHH
Q 004968 474 -PSAFLQRAYDQVVNDVDQ--------QRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVA 544 (721)
Q Consensus 474 -ys~Fl~ra~dqi~~~~a~--------~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~ 544 (721)
-+.|...++|||+|.+++ +++|++|.+.. |....-|++|++.+. +|+.++||++|++|.+++|.+++++
T Consensus 113 MtfnFsmqAid~IiNsaakt~YmSgG~~~~piVfRGPn-G~~~gv~AqHSQ~f~-~wy~siPGlkvvapysaedakGLlK 190 (359)
T KOG0524|consen 113 MTFNFSMQAIDQIINSAAKTHYMSGGQQPVPIVFRGPN-GAAAGVAAQHSQDFA-SWYGSIPGLKVVAPYSAEDAKGLLK 190 (359)
T ss_pred hcchhHHHHHHHHHHHHHHHhcccCCceeccEEEeCCC-CcccchhhhhhhhhH-HHhccCCCceEeccCChhhhhhHHH
Confidence 689999999999999875 47888888654 332235789999998 8999999999999999999999999
Q ss_pred HHHHhCCCCEEEEecCCCcc-cccCCC---CCCcceecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEee
Q 004968 545 TVASIDDRPVCFRYPRGAIV-RTDLPG---YRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVAD 620 (721)
Q Consensus 545 ~a~~~~~~P~~ir~~r~~~~-~~~~p~---~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId 620 (721)
.|++ +++|+++....-.+- ..++++ .+++.+++||+++.|+|++||||++..++..|++||+.|.++|++++|||
T Consensus 191 aAIR-d~NPVV~lEnelLYg~~f~i~~E~ls~~fv~p~gkAkier~G~~iTivt~Sr~v~~~leAA~~L~~~Gvs~EVIn 269 (359)
T KOG0524|consen 191 AAIR-DENPVVFLENELLYGLSFEIPEEALSKDFVLPLGKAKIEREGTHITIVTYSRMVGHCLEAAETLVAKGVSAEVIN 269 (359)
T ss_pred Hhcc-CCCCeEEEechhhcCCCccCChhhcCcceeeeccceeeeecCCceEEEEechhHHHHHHHHHHHHhcCCCceeEe
Confidence 9985 899999977543321 123332 23577899999999999999999999999999999999999999999999
Q ss_pred cCccccccHHHHHHHhccCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCH
Q 004968 621 ARFCKPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTG 699 (721)
Q Consensus 621 ~~~l~PlD~e~i~~l~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~ 699 (721)
+|+|+|||.++|..+++++.++++||++. .+|+|+++++.+.++.|...+.++.++...|.+.+... ++-+..-.++
T Consensus 270 lrSirP~D~~tI~~Sv~KT~~lvtVe~~~p~~gigaei~A~i~E~~fdyLdAPv~rvtg~DvP~PYa~--~lE~~a~p~~ 347 (359)
T KOG0524|consen 270 LRSIRPFDIETIGASVKKTNRLVTVEEGWPQFGIGAEICAQIMENAFDYLDAPVQRVTGADVPTPYAK--TLEDWAVPQP 347 (359)
T ss_pred eeccCcccHHHHHHHHhhhceEEEEeccccccchhHHHHHHHHHHHHhhhcchhhhhcCCCCCCccch--hhHhhcCCCH
Confidence 99999999999999999999999999998 79999999999999876333456778887888777643 3445566789
Q ss_pred HHHHHHHHHHh
Q 004968 700 HHIAATALSLL 710 (721)
Q Consensus 700 ~~I~~~i~~~l 710 (721)
++|+.++++++
T Consensus 348 ~~iV~Avk~~~ 358 (359)
T KOG0524|consen 348 ADIVTAVKKLC 358 (359)
T ss_pred HHHHHHHHHhh
Confidence 99999998875
|
|
| >PRK05261 putative phosphoketolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-41 Score=385.70 Aligned_cols=515 Identities=14% Similarity=0.115 Sum_probs=374.6
Q ss_pred CCCCCCCcccHHHHHHHHhcccC-CCCcE-EEecCCchH---HHHHHHhC-----ch----hh--hH-HHHhhC---CCC
Q 004968 117 TEKSLKSSLAAVELTVALHHVFH-APVDK-ILWDVGEQT---YAHKILTG-----RR----SL--IH-TLRKKD---GIS 176 (721)
Q Consensus 117 ~~Gh~~sslg~vel~~aL~~vf~-~p~D~-iv~d~GH~~---y~h~~ltG-----r~----~~--~~-~~r~~g---gl~ 176 (721)
--||.|.+-|+-.+.++|.++-. ..-|. +|.+.||.+ |+...|.| .. ++ |. .+|||+ |++
T Consensus 48 ~~GHwGt~pgln~vyahln~li~~~~~~~~~V~g~GHg~p~~~a~~~L~Gs~~~~yp~is~d~~gl~~lfrqfs~pgg~~ 127 (785)
T PRK05261 48 LLGHWGTTPGLNFIYAHLNRLIRKYDLNMIYITGPGHGGPAMVANAYLEGTYSEIYPEITQDEEGMARLFKQFSFPGGIP 127 (785)
T ss_pred cCCCCCCcHHHHHHHHHHHHHHhhcCCceEEEeCCCccHHHHHHHHHHcCCCcccCCCCCccHHHHHHHHHhccCCCCcC
Confidence 35999999999877777766533 22354 568999998 99999999 21 22 55 578875 477
Q ss_pred CCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccch---HHHHHHHhhhcC-CCEEEEEECC
Q 004968 177 GYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQ---AYEAMSNAGYLD-SNMIVILNDS 252 (721)
Q Consensus 177 G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~---~~Ealn~A~~~~-~plivIv~dN 252 (721)
|||.+ +.|+....+|.+|++++.|+|+|++ +++..|+|++|||+.++|. .|++.+++...+ .+|+.|+++|
T Consensus 128 sH~~~-~tPGi~~~~G~LG~gls~A~G~Al~----~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g~vLPIld~N 202 (785)
T PRK05261 128 SHAAP-ETPGSIHEGGELGYSLSHAYGAAFD----NPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLN 202 (785)
T ss_pred CCCCC-CCCCeeeCCCchhhHHHHHHHHHHc----CCCCEEEEEECcCchhhhhhHHHhhhhhhcccccCCCEEEEEEec
Confidence 77764 5677777899999999999999965 6789999999999999998 599999888887 8999999999
Q ss_pred CCC-cCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCce
Q 004968 253 RHS-LHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLY 331 (721)
Q Consensus 253 ~~~-s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~ 331 (721)
+++ +.||.... + +..++ ..+|++|||.
T Consensus 203 g~~Is~pt~~~~-------~-----------------------------~~e~l----------------~~rf~g~Gw~ 230 (785)
T PRK05261 203 GYKIANPTILAR-------I-----------------------------SDEEL----------------EALFRGYGYE 230 (785)
T ss_pred CCcCCCCccccc-------c-----------------------------CcHhH----------------HHHHHHCCCe
Confidence 984 22221000 0 00111 3468899999
Q ss_pred EEeccCCCCHHHHHHH--------HH-------HHHhc-CCCCCE--EEEEEEeccCCCcc------ccccccccccccc
Q 004968 332 YIGPVDGHNIEDLISV--------LQ-------EVASL-GSMGPV--LVHVVTEENRRAED------TQKSEAIEKQQEG 387 (721)
Q Consensus 332 ~~g~vdGhd~~~l~~a--------l~-------~a~~~-~~~~P~--lI~v~T~kg~G~~~------ae~~~~~~~~Hg~ 387 (721)
.+ .|||||++++.++ ++ +||.. ...+|+ +|+++|.||+|-+. .| +..+.|++
T Consensus 231 ~i-~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~P~wp~Ii~rT~kG~g~p~~~dg~~~e---Gs~raHqv 306 (785)
T PRK05261 231 PY-FVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTTRPRWPMIVLRTPKGWTGPKEVDGKPIE---GSWRAHQV 306 (785)
T ss_pred eE-EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEECCccCCCCcccCCcccC---CCchhhcC
Confidence 98 6899999887766 44 33321 015799 99999999999652 34 35677887
Q ss_pred CC-------------------------C-CCCCC--------------------------CC----C-------------
Q 004968 388 AS-------------------------D-SNSLP--------------------------FG----N------------- 398 (721)
Q Consensus 388 ~~-------------------------f-~~g~~--------------------------~~----~------------- 398 (721)
+. | ..|+. .+ +
T Consensus 307 PL~~~~~~~~~~~~L~~wl~sy~p~elF~~~g~l~~~~~~l~p~g~~r~~~~P~ang~~~~~~l~lp~~~~~~~~~~~~g 386 (785)
T PRK05261 307 PLANVRDNPEHLDLLEDWLRSYRPEELFDEDGRLKPELAALAPKGDRRMGANPHANGGLLLRDLRLPDFRDYAVPVGKPG 386 (785)
T ss_pred CCCCcccCHHHHHHHHHHhhcCChhhhcCCCCchhHHHHHhccCchhhhcCCchhcCCcCccccCCCchHhhcccccCCC
Confidence 41 2 11110 00 0
Q ss_pred --CcccHHHHHHHHHHHHHHcCCC-eEEEecCCCCccChHHHHH-----------------hCCCcEeeccccHHHHHHH
Q 004968 399 --YSRTYDDCFIEALVMEAEKDKD-IVVVHAGMEMDLSLQLFQE-----------------KFPERYFDVGMAEQHAVTF 458 (721)
Q Consensus 399 --~~~~~~~~~~~~L~~~~~~d~~-iv~i~ad~~~~~~l~~f~~-----------------~fp~R~~d~GIaE~~~v~~ 458 (721)
.....+ ++++.|.++++.+|+ ++++++|...|..+....+ ..-+|+++ |++|++|.++
T Consensus 387 ~~~~~atr-~~g~~l~~v~~~np~~frvf~pDe~~SNrl~~~f~~t~r~~~~~~~~~d~~~~~~Grvie-~LsEh~~~g~ 464 (785)
T PRK05261 387 AVMAEATR-VLGKYLRDVIKLNPDNFRIFGPDETASNRLQAVFEVTDRQWMAEILPYDEHLAPDGRVME-VLSEHLCEGW 464 (785)
T ss_pred ccccccHH-HHHHHHHHHHHhCCCceEEEcCCcchhhccHhHHhhhccccccccCCcccccCCCCCeee-eecHHHHHHH
Confidence 001233 399999999999999 8899999998888743221 12379999 9999999999
Q ss_pred HHHHHhCCCeeEEEecHhhH---HHHHHHHHHHhh----------cCCcceEEEEcCCCC-cCCCCCCcCc---HHHHHH
Q 004968 459 SAGLACGGLKPFCIIPSAFL---QRAYDQVVNDVD----------QQRLPVRFVITSAGL-VGSDGPTQCG---AFDITF 521 (721)
Q Consensus 459 AaGlA~~G~~p~~~tys~Fl---~ra~dqi~~~~a----------~~~lpVv~v~~~~G~-~G~dG~TH~~---~~dia~ 521 (721)
+.|+++.|.++++++|..|. ..++.|+.-..- +..++ ++.++... .|+||+|||. ++.++-
T Consensus 465 ~~Gy~LtG~~~~~~sYeaF~~ivd~m~~q~~kw~r~~~~~~wr~~~~sLn--~l~Ts~~~~qghNG~THQ~Pg~ie~l~~ 542 (785)
T PRK05261 465 LEGYLLTGRHGFFSSYEAFIHIVDSMFNQHAKWLKVAREIPWRKPIPSLN--YLLTSHVWRQDHNGFSHQDPGFIDHVAN 542 (785)
T ss_pred HHHHHhcCCCcceecHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCccee--EEeecceeecCCCCCCCCCchHHHHHHh
Confidence 99999999999999999998 788888733322 23343 55567677 7999999999 999888
Q ss_pred HccCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEecCCCcccccCCCCCC--cceecCceEEEE--e-----CCcEEE
Q 004968 522 MSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPRGAIVRTDLPGYRG--IPIEIGKGKVLV--E-----GKDVAL 592 (721)
Q Consensus 522 ~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~p~~~~--~~~~~gk~~vl~--e-----G~dv~I 592 (721)
++. |++.|+.|+|.+|+..+++.|++..++|.+|.++|++.+.. ...+. ..+.-| ++++. + +.|++|
T Consensus 543 ~r~-~~~rV~rPaDaNe~laa~~~al~s~~~p~~IvlsRQ~lp~~--~~~~~a~~~~~kG-ayi~~~a~~~~~~~pDvvL 618 (785)
T PRK05261 543 KKP-DVIRVYLPPDANTLLAVADHCLRSRNYINVIVAGKQPRPQW--LSMDEARKHCTKG-LGIWDWASNDDGEEPDVVL 618 (785)
T ss_pred cCC-CcceEEeCCCHHHHHHHHHHHHHhCCCCEEEEEeCCCCccc--CChHHHHHhccCc-eEEEEeccCCCCCCCCEEE
Confidence 888 99999999999999999999998888999999999985432 11110 112222 45555 2 359999
Q ss_pred EEechhhHH-HHHHHHHHHhC--CCCeEEeecCccccc------------cHHHHHHHhccCCeEEEEcCCCCCChHHHH
Q 004968 593 LGYGAMVQN-CLKARALLSKL--GIDVTVADARFCKPL------------DIKLVRELCQNHTFLITVEEGSIGGFGSHV 657 (721)
Q Consensus 593 va~Gs~v~~-al~Aa~~L~~~--Gi~v~VId~~~l~Pl------------D~e~i~~l~~~~~~vvvvEe~~~gG~gs~v 657 (721)
+|+|+++.. |++|++.|+++ ||+++||++. .+| +.+.+.++.-..+.||+.= -|..+.|
T Consensus 619 ~atGsev~leAlaAa~~L~~~~pgikvRVVSv~--dLf~lQ~~~~~~~~lsd~~f~~lFt~d~pvif~~----hgyp~~i 692 (785)
T PRK05261 619 ACAGDVPTLETLAAADLLREHFPDLKIRVVNVV--DLMKLQPPSEHPHGLSDREFDALFTTDKPVIFAF----HGYPWLI 692 (785)
T ss_pred EEeCcHhhHHHHHHHHHHHhhCCCCCEEEEEec--hhhhhCCcccCCCCCCHHHHHHhCCCCCcEEEEe----CCCHHHH
Confidence 999999988 99999999999 9999999994 433 4566777765555555432 3445556
Q ss_pred HHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHh
Q 004968 658 SHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLL 710 (721)
Q Consensus 658 ~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l 710 (721)
...+-... ...+++..|... =+..-++-+++-..++|--+++..+.+.+
T Consensus 693 ~~l~~~r~---~~~~~~v~gy~e-~g~tttp~dm~~~N~~~r~~l~~~a~~~~ 741 (785)
T PRK05261 693 HRLTYRRT---NHHNFHVRGYKE-EGTTTTPFDMVVLNELDRFHLAIDAIDRV 741 (785)
T ss_pred HHHhccCC---CCCccEEEEEec-CCCCCCHHHHHHHhCCCHHHHHHHHHHhh
Confidence 55554431 123555556532 23344688999999999988888777653
|
|
| >PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=393.56 Aligned_cols=537 Identities=14% Similarity=0.117 Sum_probs=362.4
Q ss_pred ccCCCccccCCCCHHHHHHHHHHH-HHHHHHhH--hc-CCCCCCCcccHHHHHHHHhcccC-----CCCcEEEecCCchH
Q 004968 83 DLVENPLRLKSLTIKELKQLAVEI-RSELSSIV--SK-TEKSLKSSLAAVELTVALHHVFH-----APVDKILWDVGEQT 153 (721)
Q Consensus 83 ~~i~~p~~~~~~~~~~l~~la~ei-R~~~~~~~--~~-~~Gh~~sslg~vel~~aL~~vf~-----~p~D~iv~d~GH~~ 153 (721)
++|.++.. .++.+++.++.+.+ |.+..+.. .+ .++-..+..|+-.+.++|....+ .++|+++. ..||.
T Consensus 177 ~~iE~~~~--~~s~e~~~~il~~m~~~r~fE~fl~~~f~~~Krf~~eG~Ea~i~gl~~li~~a~~lg~~D~vig-maHRg 253 (924)
T PRK09404 177 QRIESGRP--SFSAEEKKAILERLTAAEGFERFLHTKFVGQKRFSLEGGESLIPMLDEIIRRAGKLGVKEIVIG-MAHRG 253 (924)
T ss_pred HHHhCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccchhhHHHHHHHHHHHHHhCCCCCEEEe-cCcCc
Confidence 34543333 67777777665544 33333221 22 23434467787445554433211 35666553 46999
Q ss_pred HHHHHHh--CchhhhHHHHhhCCC--------C-------CCCC----CCCCCCC--CcCcCCCcchHHHHHHHHHHHHH
Q 004968 154 YAHKILT--GRRSLIHTLRKKDGI--------S-------GYTS----RSESEYD--PFNAGHGCNSVSAGLGMAVARDI 210 (721)
Q Consensus 154 y~h~~lt--Gr~~~~~~~r~~ggl--------~-------G~~~----~~es~~d--~~~~G~~G~~is~A~G~AlA~~l 210 (721)
..|.+.. |...+ ..+.++.|. + |++. +..+.|. .+..+|+|...|+|+|+|.|.++
T Consensus 254 rlnvLa~v~G~~~~-~ifaEf~Gk~~~~~~~~~GdvkyHlG~~~~~~g~gg~mhi~l~~npShleav~Pva~G~A~A~q~ 332 (924)
T PRK09404 254 RLNVLVNVLGKPPR-DLFAEFEGKHGPDEVLGSGDVKYHLGFSSDRETDGGEVHLSLAFNPSHLEIVNPVVEGSVRARQD 332 (924)
T ss_pred hHHHHHHhcCCCHH-HHHHHHcCCCCCCCCCCCCCcccccCccccccCCCCeeEeeccCCccccccccCeehhHHHHHHH
Confidence 8886663 65221 122333222 1 1111 1122221 22348999999999999999999
Q ss_pred cCCC------CeEEEEEcCCCc-ccchHHHHHHHhhhcCCC---EEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhh
Q 004968 211 KGKR------ECIVTVISNGTT-MAGQAYEAMSNAGYLDSN---MIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQS 280 (721)
Q Consensus 211 ~g~~------~~VvaviGDGal-~~G~~~Ealn~A~~~~~p---livIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~ 280 (721)
++.+ ..+|+++||||+ .+|.+||+||+|+.|++| +|+||.||++. +.| +.. +.++
T Consensus 333 ~~~~~~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g-~tT-------~~~-------~~~s 397 (924)
T PRK09404 333 RRGDGQDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIG-FTT-------SPP-------DDRS 397 (924)
T ss_pred hcCCcccccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEE-Eee-------CHH-------Hhcc
Confidence 8877 789999999998 699999999999999987 99999999983 222 110 0000
Q ss_pred chHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhc--CCCC
Q 004968 281 SKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL--GSMG 358 (721)
Q Consensus 281 ~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~--~~~~ 358 (721)
. .+ -..+++++|+..+ .|||+|++++.++.+.|.+. +.++
T Consensus 398 ~-----------------------------~~--------~sd~Ak~~giP~~-~VDG~D~~AV~~a~~~A~e~~r~g~g 439 (924)
T PRK09404 398 T-----------------------------PY--------CTDVAKMVQAPIF-HVNGDDPEAVVFATRLALEYRQKFKK 439 (924)
T ss_pred c-----------------------------hh--------HHHHHeecCCcEE-EEcCCCHHHHHHHHHHHHHHHHhcCc
Confidence 0 00 0235678899988 89999999998888766432 2579
Q ss_pred CEEEEEEEeccCCCccccccc--cc---ccc--cccC-------------------------------------------
Q 004968 359 PVLVHVVTEENRRAEDTQKSE--AI---EKQ--QEGA------------------------------------------- 388 (721)
Q Consensus 359 P~lI~v~T~kg~G~~~ae~~~--~~---~~~--Hg~~------------------------------------------- 388 (721)
|++|++.|.+-+|+...+... .+ ..| |.-+
T Consensus 440 PvlIE~~tYR~~GHne~D~p~yr~p~ey~~~~~~~dpi~~~~~~Li~~G~lt~~e~~~i~~~~~~~v~~a~~~A~~~~~~ 519 (924)
T PRK09404 440 DVVIDLVCYRRHGHNEGDEPSFTQPLMYKKIKKHPTTRELYADKLVAEGVITEEEADEMVNEYRDALDAGFEVVKEWRPA 519 (924)
T ss_pred CEEEEEEEecCCCCCCCCCCcCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 999999999998875433100 00 011 1000
Q ss_pred -----CC------------CCCCC-------------CC----------------------CCcccHHHHHHHHHHHHHH
Q 004968 389 -----SD------------SNSLP-------------FG----------------------NYSRTYDDCFIEALVMEAE 416 (721)
Q Consensus 389 -----~f------------~~g~~-------------~~----------------------~~~~~~~~~~~~~L~~~~~ 416 (721)
.+ .||-+ .+ .....|..|...++..+++
T Consensus 520 ~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~~~~~~~~~P~~f~~h~~~~k~~~~R~~~~~~~~~idw~~Ae~lA~~s~l~ 599 (924)
T PRK09404 520 DWLAGDWSPYLGHEWDDPVDTGVPLERLKELAEKLTTVPEGFKVHPKVKKILEDRREMAEGEKPIDWGMAEALAFASLLD 599 (924)
T ss_pred cccccccccccccccccccCCCCCHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHHHh
Confidence 00 01100 00 0124688999999999999
Q ss_pred cCCCeEEEecCCCCcc--------------C----hHHHHHhC-CCcEeeccccHHHHHHHHHHHHhCCCee--EEEe-c
Q 004968 417 KDKDIVVVHAGMEMDL--------------S----LQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKP--FCII-P 474 (721)
Q Consensus 417 ~d~~iv~i~ad~~~~~--------------~----l~~f~~~f-p~R~~d~GIaE~~~v~~AaGlA~~G~~p--~~~t-y 474 (721)
+|++|+++++|++.|| | ++++.++| |.|++|++|+|.+++|++.|+|+.|.+| +++. |
T Consensus 600 ~~~~v~l~GeDv~rgtFshRHavl~dq~~gg~~~~~~~l~~~~g~~rV~nsplsE~~~~G~~~G~a~~g~~~l~i~E~qf 679 (924)
T PRK09404 600 EGYPVRLSGQDSGRGTFSHRHAVLHDQKTGETYIPLNHLSEGQASFEVYDSPLSEEAVLGFEYGYSTAEPNTLVIWEAQF 679 (924)
T ss_pred CCCCEEEEeeeCCCCcccccchhccccCCCCEeccccchhhhcCCceEecCcchHHHHHHHHHHHHhcCCCCceEEEEec
Confidence 9999999999997533 1 36777888 7899999999999999999999999975 9987 9
Q ss_pred HhhHH---HHHHHHHHHh-hcC--CcceEEEEcCCCCcCCCCCCcCcHHHHHHHccC--CCcEEEeeCCHHHHHHHHHHH
Q 004968 475 SAFLQ---RAYDQVVNDV-DQQ--RLPVRFVITSAGLVGSDGPTQCGAFDITFMSCL--PNMIVMAPSDEDELVDMVATV 546 (721)
Q Consensus 475 s~Fl~---ra~dqi~~~~-a~~--~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~i--Pnl~V~~Psd~~E~~~~l~~a 546 (721)
.+|+. .++||+++.+ ++. ..++++...++ ..|..+..|++..+ +|+..+ |||+|+.|++|.|++++|+.+
T Consensus 680 gDF~~~AQ~~~Dq~i~~~~~k~~~~sglv~~~p~G-~~g~g~~hsS~~~E-~~l~~~~~~gl~Vv~pstpad~~~lLr~q 757 (924)
T PRK09404 680 GDFANGAQVVIDQFISSGEQKWGRLSGLVMLLPHG-YEGQGPEHSSARLE-RFLQLCAEDNMQVCNPTTPAQYFHLLRRQ 757 (924)
T ss_pred cccccchHHHHHHHHHHHHHHhcCccCeEEEecCc-CCCCChhhhccCHH-HHHHhCCCCCCEEEecCCHHHHHHHHHHH
Confidence 99985 7799998886 443 45777777765 33544455555666 787655 799999999999999999987
Q ss_pred HHhC-CCCEEEEecCCCcccc-------cCCCCCCcceecCceEEEEeCCcE--EEEEechhhHHHHHHHHHHHhCCCCe
Q 004968 547 ASID-DRPVCFRYPRGAIVRT-------DLPGYRGIPIEIGKGKVLVEGKDV--ALLGYGAMVQNCLKARALLSKLGIDV 616 (721)
Q Consensus 547 ~~~~-~~P~~ir~~r~~~~~~-------~~p~~~~~~~~~gk~~vl~eG~dv--~Iva~Gs~v~~al~Aa~~L~~~Gi~v 616 (721)
+.++ .+|++|..|+..+... +++.. .+...++++. .+++++| +|||||.+++.+++|++.+. ..++
T Consensus 758 ~~r~~r~Pvv~~~pK~L~r~~~~~s~~~e~~~~-~f~~vi~~~~-~~~~~~v~r~iv~~Gk~~~~~~~a~~~~~--~~~v 833 (924)
T PRK09404 758 ALRPFRKPLVVMTPKSLLRHPLAVSSLEELAEG-SFQPVIGDID-ELDPKKVKRVVLCSGKVYYDLLEARRKRG--IDDV 833 (924)
T ss_pred HhhCCCCCEEEeccHHHhCCCCCCCCHHHcCCC-Cceeeccccc-ccCccceeEEEEEcCHHHHHHHHHHHhCC--CCCE
Confidence 5445 4999999998764311 12211 1333455554 5677899 79999999999999998553 3499
Q ss_pred EEeecCccccccHHHHHHHhccC---CeEEEE-cCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCcccc
Q 004968 617 TVADARFCKPLDIKLVRELCQNH---TFLITV-EEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIE 684 (721)
Q Consensus 617 ~VId~~~l~PlD~e~i~~l~~~~---~~vvvv-Ee~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~ 684 (721)
+|||+++|.|||.++|.++++++ +.+|+| ||....|...+|...+...- ....+++-+|-|..-.+
T Consensus 834 ~ii~le~L~P~~~~~i~~~v~k~~~~~~~v~vqEe~~n~G~~~~~~~~~~~~~--~~~~~~~y~gR~~~asp 903 (924)
T PRK09404 834 AIVRIEQLYPFPHEELAAELAKYPNAKEVVWCQEEPKNQGAWYFIQHHLEEVL--PEGQKLRYAGRPASASP 903 (924)
T ss_pred EEEEeeeeCCCCHHHHHHHHHhcCCCCeEEEEeeCCCCCCcHHHHHHHHHHHh--ccCCeeEEECCCCcCCC
Confidence 99999999999999999988876 245555 55557888888877765321 11235666776544333
|
|
| >COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=350.23 Aligned_cols=583 Identities=17% Similarity=0.196 Sum_probs=411.2
Q ss_pred HHHHH-HHHHHHHHHHhHh-------cCCCCCCCcccHHHHHHHHhcc-cCCC-----CcEEEecCCchH---HHHHHHh
Q 004968 98 ELKQL-AVEIRSELSSIVS-------KTEKSLKSSLAAVELTVALHHV-FHAP-----VDKILWDVGEQT---YAHKILT 160 (721)
Q Consensus 98 ~l~~l-a~eiR~~~~~~~~-------~~~Gh~~sslg~vel~~aL~~v-f~~p-----~D~iv~d~GH~~---y~h~~lt 160 (721)
+|+.. -.-+|..++.++- +.|||++|+.|.+.+..++|.. |+.+ .|.+.+ .||.+ |+-..|-
T Consensus 76 ~lErrir~~irWna~a~vlRaskk~l~lGGH~aSfaSsatlyev~fnhffr~~~~~~ggDlV~~-qgHaSPg~yArafLe 154 (887)
T COG2609 76 ELERRIRSLIRWNAHAMVLRASKKGLELGGHIASFASSATLYEVGFNHFFRAKSEKDGGDLVFF-QGHASPGIYARAFLE 154 (887)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCCccchhhhhhhHHHHHHHHHHHHhcCcCCCCCCceEEE-ecCCCchHHHHHHHh
Confidence 44443 3334555555553 2589999999999999888865 5432 487776 79998 8989999
Q ss_pred Cc--hhhhHHHHhhCC---CCCCCCCCC-CCCCCcCcCCCcchHHHHHHHHHHHHHcC-------CCCeEEEEEcCCCcc
Q 004968 161 GR--RSLIHTLRKKDG---ISGYTSRSE-SEYDPFNAGHGCNSVSAGLGMAVARDIKG-------KRECIVTVISNGTTM 227 (721)
Q Consensus 161 Gr--~~~~~~~r~~gg---l~G~~~~~e-s~~d~~~~G~~G~~is~A~G~AlA~~l~g-------~~~~VvaviGDGal~ 227 (721)
|| .+++..+||..+ ++.||+|.. ..+..|.|++||-|.-.|+=-|.-.|+.. ++++|+||+|||+|.
T Consensus 155 GRlseeqLdnFRqev~g~gl~SYPhp~lmpdfwqFpTvSmGLGp~~aiyqArf~kYL~~RGl~~~~~~~v~afLGDgEmD 234 (887)
T COG2609 155 GRLTEEQLDNFRQEVDGKGLSSYPHPKLMPDFWQFPTVSMGLGPIQAIYQARFLKYLEARGLKDTSDQKVWAFLGDGEMD 234 (887)
T ss_pred ccccHHHHHHHHHhccCCCCCCCCCCcCCccccccCcccccccHHHHHHHHHHHHHHHhcCCcCCCCCeEEEEecCcccC
Confidence 99 778999999754 999999864 45667899999988888888777766542 478999999999999
Q ss_pred cchHHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhcc-Ccc----
Q 004968 228 AGQAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRI-GRG---- 301 (721)
Q Consensus 228 ~G~~~Ealn~A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~-g~~---- 301 (721)
|+-+.+|+..|+..+ .|++||||.|.|. .+.+|-+-++.++++.. -+|..++.+.+.+ |..
T Consensus 235 Epes~gAi~~A~re~LdNlifVincNlQr--------LDgpVrgngkiiqelE~-----~FrgAGW~VikviWg~~wd~l 301 (887)
T COG2609 235 EPESRGAITEAAREKLDNLIFVINCNLQR--------LDGPVRGNGKIIQELEG-----IFRGAGWNVIKVIWGRRWDEL 301 (887)
T ss_pred CchhhHHHHHHHHhcCCceEEEEecchhh--------cCCcccCCchhHHHHHH-----HhccCCceEEEEEecccHHHH
Confidence 999999999999999 8999999999983 45566655566665431 2355566666532 221
Q ss_pred -----hHHHHHHHHHHhhccc----------------C--CCccceeeeeC---ceEEeccCCCCHHHHHHHHHHHHhcC
Q 004968 302 -----MHEWAAKVDEYARGMI----------------G--PQGSTLFEELG---LYYIGPVDGHNIEDLISVLQEVASLG 355 (721)
Q Consensus 302 -----~~~~~~~~~~~~~~~~----------------~--~~~~~l~ea~G---~~~~g~vdGhd~~~l~~al~~a~~~~ 355 (721)
-..+.+.+++.+.+.. . |....+.+.+. +... .-.|||+..+.+++++|.+.
T Consensus 302 l~kd~~gkL~~~m~e~~dgdyqt~kakdGayvRehff~~~Pe~~aLVa~~tD~diw~L-~rGGHD~~ki~aA~~~A~~~- 379 (887)
T COG2609 302 LAKDTGGKLRQLMNETVDGDYQTFKAKDGAYVREHFFGRYPETAALVADMTDDDIWAL-NRGGHDPEKVYAAFKKAQEH- 379 (887)
T ss_pred hcccCcchHHHHHHhcccchhhhhcccccHHHHHHHhccChHHHHHHHhccHHHHHHH-hcCCCCHHHHHHHHHHHhcC-
Confidence 1112223333322211 0 10111111111 0001 24689999999999999985
Q ss_pred CCCCEEEEEEEeccCCCcccccccccccccccCC------------C------CCCCC----------------------
Q 004968 356 SMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGAS------------D------SNSLP---------------------- 395 (721)
Q Consensus 356 ~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~~------------f------~~g~~---------------------- 395 (721)
.++|++|.++|+||.|...+-+ +....|-+.+ | +.++.
T Consensus 380 kg~PtvilA~TIKGyglg~~~e--g~n~aHq~kkm~~~~l~~~Rdr~~ipvsd~e~e~lpy~~~g~~s~E~~yl~~rr~a 457 (887)
T COG2609 380 KGRPTVILAKTIKGYGLGEAAE--GKNIAHQVKKMTPDQLKEFRDRFGIPVSDAELEELPYYHFGEDSPEYKYLHARRAA 457 (887)
T ss_pred CCCceEEEEeeeccccCchhhc--ccchhhhhhcCCHHHHHHHHhhcCCCCchhhhhcCCcCCCCCCcHHHHHHHHHHHh
Confidence 3589999999999999874333 3455565521 1 00000
Q ss_pred -----------------CC------------CCcccHHHHHHHHHHHHHHcC---CCeEEEecCCCCccChHHHHHh---
Q 004968 396 -----------------FG------------NYSRTYDDCFIEALVMEAEKD---KDIVVVHAGMEMDLSLQLFQEK--- 440 (721)
Q Consensus 396 -----------------~~------------~~~~~~~~~~~~~L~~~~~~d---~~iv~i~ad~~~~~~l~~f~~~--- 440 (721)
++ ....+.+.+|...|.+++++. ++||-|.+|...++||++|..+
T Consensus 458 l~g~~p~rr~~~t~~l~vP~l~~~~a~~~~~g~~iSTtmAfvr~l~~llkdk~ig~riVpiipDearTfgmeg~f~q~GI 537 (887)
T COG2609 458 LGGYLPARRPKFTPALPVPSLSDFQALLKGQGEEISTTMAFVRILNELLKDKEIGKRIVPIIPDEARTFGMEGLFRQIGI 537 (887)
T ss_pred cCCCCchhcccCCCCccCCcHHHHHHHHhccCccchhHHHHHHHHHHHHhccccCCccccccCchhhhccchhhhhhccc
Confidence 00 123567889999999998843 5799999999988988765432
Q ss_pred -------C---------------CCcEeeccccHHHHHH--HHHHHHhC--C--CeeEEEecHhh-HHHHHHHHHHHhhc
Q 004968 441 -------F---------------PERYFDVGMAEQHAVT--FSAGLACG--G--LKPFCIIPSAF-LQRAYDQVVNDVDQ 491 (721)
Q Consensus 441 -------f---------------p~R~~d~GIaE~~~v~--~AaGlA~~--G--~~p~~~tys~F-l~ra~dqi~~~~a~ 491 (721)
| .++++.-||+|.++++ +|+|.++. | +.||.-.|++| +||..|-+ ..+|.
T Consensus 538 y~~~GQ~y~p~d~~~~~~ykea~~GQiLqeGInE~ga~~sw~AagtSys~~~~pmiPfyi~YsmFgfqRigD~~-waA~d 616 (887)
T COG2609 538 YNPNGQQYTPQDRDQVMYYKEAESGQILQEGINEAGAFASWIAAGTSYSTHGEPMIPFYIYYSMFGFQRIGDLL-WAAGD 616 (887)
T ss_pred ccCCCccCCccchhhhhhhhhCCCcchHHhhhccccHHHHHHHHhcccccCCccceeeeeeechhhhhhHHHHH-HHHHh
Confidence 1 3689999999999988 67777765 5 78998889999 99999965 78888
Q ss_pred CCcceEEEEcCCCC--cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCCC------CEEEEecCCCc
Q 004968 492 QRLPVRFVITSAGL--VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDR------PVCFRYPRGAI 563 (721)
Q Consensus 492 ~~lpVv~v~~~~G~--~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~------P~~ir~~r~~~ 563 (721)
|...-.+++..+|. ....|-+|+.....-+-..+||++.|.|+.+.|+..+++.++++--+ -.||++...++
T Consensus 617 q~ARgFLlgaTagrtTLngEGlqHedghS~l~~~~ip~~~tYdPafayEvAVI~~~g~~rmy~~~qe~v~yYlt~~ne~~ 696 (887)
T COG2609 617 QDARGFLLGATAGRTTLNGEGLQHEDGHSHLQAMTIPNCISYDPAFAYEVAVIMQDGLRRMYGEGQENVFYYITLSNENY 696 (887)
T ss_pred hhhcceeEeecCCCceeCccccccccccchhhhhcCCCccccCchHHHHHHHHHHHHHHHHhccCcCCcEEEEEeccCcC
Confidence 98884444544454 23458888877665566779999999999999999999999875322 35677666665
Q ss_pred ccccCCCCCCcceecCc-eEEEEe-----CCcEEEEEechhhHHHHHHHHHHHh-CCCCeEEeecCccccccHH------
Q 004968 564 VRTDLPGYRGIPIEIGK-GKVLVE-----GKDVALLGYGAMVQNCLKARALLSK-LGIDVTVADARFCKPLDIK------ 630 (721)
Q Consensus 564 ~~~~~p~~~~~~~~~gk-~~vl~e-----G~dv~Iva~Gs~v~~al~Aa~~L~~-~Gi~v~VId~~~l~PlD~e------ 630 (721)
+....|.... -.+-| .|.++. +.++.|+++|...++|++|++.|++ .|+.+.|..+.+..-|-.+
T Consensus 697 ~qPamp~gae--~gI~kG~Y~l~~~~~~~~~~vqll~SGai~~ea~~AaelL~~d~gv~adl~svtS~~eL~rdg~a~~R 774 (887)
T COG2609 697 PQPAMPEGAE--EGIIKGIYKLETPGGQGKAKVQLLGSGAILREALEAAELLAKDYGVEADLWSVTSFDELARDGQAAER 774 (887)
T ss_pred CCCCCCCcch--hhhhhceeEeecCCCCCCceEEEEecchhHHHHHHHHHHHhhccccccCeeecccHHHHhcchHHHHH
Confidence 4433442211 12222 344543 3689999999999999999999988 6999999999997665433
Q ss_pred -------------HHHHHhccCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCC
Q 004968 631 -------------LVRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGL 697 (721)
Q Consensus 631 -------------~i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl 697 (721)
.+.+.+.....+|++-+... -+.+.|.+++ +.+.+.+|. |.|+.+++..+++++|.+
T Consensus 775 ~n~lhP~~~~~v~yv~~~L~~~~p~Va~tDy~~-~~a~qir~~v--------p~~y~vLGt-dgFGrSdsr~~Lr~~fev 844 (887)
T COG2609 775 WNLLHPTETPRVPYVAQVLNADGPVVAVTDYMK-LFAEQIRAVV--------PQRYRVLGT-DGFGRSDSRENLRRFFEV 844 (887)
T ss_pred HHhcCCCCCCCchHHHHHhccCCCeEEechhhH-hHHHHHhccc--------CCeeEEecc-CCCCccCcHHHHHHHhcc
Confidence 33343443456676666542 1233333322 456788896 999999999999999999
Q ss_pred CHHHHHHHHHHHhh
Q 004968 698 TGHHIAATALSLLG 711 (721)
Q Consensus 698 ~~~~I~~~i~~~l~ 711 (721)
|+..|+.++.+.+.
T Consensus 845 Da~~vv~Aal~~La 858 (887)
T COG2609 845 DAYYVVVAALSALA 858 (887)
T ss_pred chHHHHHHHHHHHh
Confidence 99999999988874
|
|
| >cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=336.62 Aligned_cols=195 Identities=59% Similarity=0.943 Sum_probs=178.1
Q ss_pred CCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcch
Q 004968 118 EKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNS 197 (721)
Q Consensus 118 ~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~ 197 (721)
+||+++++|++|++.+||++|+.|+|+||+|+||++|++++++|+++++.++|++++++|||.+.+++++.+++|++|++
T Consensus 1 ~gh~g~~ls~~~i~~~L~~~~~~~rDr~ils~gH~~~~~~~~~g~~~~l~~~~~~~~~~g~p~~~~~~~~~~~~G~lG~g 80 (195)
T cd02007 1 GGHLGSNLGVVELTLALHYVFDSPKDKIIWDVGHQAYPHKILTGRRDQFHTLRQYGGLSGFTKRSESEYDAFGTGHSSTS 80 (195)
T ss_pred CCCCCcchhHHHHHHHHHHhcCCCCCeEEEecccHHHHHHHHHCCHHHHhhhhcCCCCCCCCcCCCCCCceECCCchhhh
Confidence 59999999999999999999998999999999999999999999999999999999999999998888888999999999
Q ss_pred HHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhh
Q 004968 198 VSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSR 277 (721)
Q Consensus 198 is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~ 277 (721)
+|+|+|+|+|.++++++++|||++|||++++|++||+|++|+.+++|+++|++||+++ ++++.+.
T Consensus 81 l~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~~--------~~~~~~~------- 145 (195)
T cd02007 81 ISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMS--------ISPNVGT------- 145 (195)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCcc--------cCCCCCC-------
Confidence 9999999999999999999999999999999999999999999999999999999984 1222110
Q ss_pred hhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCC
Q 004968 278 IQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSM 357 (721)
Q Consensus 278 ~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~ 357 (721)
...+|+++||.+..++||||++++.++++++++ .+
T Consensus 146 -------------------------------------------~~~~~~a~G~~~~~~vdG~d~~~l~~a~~~a~~--~~ 180 (195)
T cd02007 146 -------------------------------------------PGNLFEELGFRYIGPVDGHNIEALIKVLKEVKD--LK 180 (195)
T ss_pred -------------------------------------------HHHHHHhcCCCccceECCCCHHHHHHHHHHHHh--CC
Confidence 023567889998866899999999999999987 57
Q ss_pred CCEEEEEEEeccCCC
Q 004968 358 GPVLVHVVTEENRRA 372 (721)
Q Consensus 358 ~P~lI~v~T~kg~G~ 372 (721)
+|++|+++|.||+||
T Consensus 181 ~P~~I~~~T~kg~g~ 195 (195)
T cd02007 181 GPVLLHVVTKKGKGY 195 (195)
T ss_pred CCEEEEEEEecccCc
Confidence 899999999999997
|
Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6). |
| >TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=369.25 Aligned_cols=434 Identities=15% Similarity=0.127 Sum_probs=306.8
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCC------CCeEEEEEcCCCc-ccchHHHHHHHhhhcCCCE---EEEEECCCCCcCCC
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGK------RECIVTVISNGTT-MAGQAYEAMSNAGYLDSNM---IVILNDSRHSLHPK 259 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~------~~~VvaviGDGal-~~G~~~Ealn~A~~~~~pl---ivIv~dN~~~s~~t 259 (721)
..+|++...|.|+|.|.|.+.++. +..+|+++||||+ .+|.++|+||+|+.|++|+ |+||.||++. +.|
T Consensus 313 npSHLeav~Pva~G~ArA~q~~~~~~~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg-~tT 391 (929)
T TIGR00239 313 NPSHLEIVSPVVIGSTRARLDRLNDSPESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIG-FTT 391 (929)
T ss_pred CCcccccccchhhhHHHHHHHhcCCcccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEE-EEE
Confidence 357999999999999999988765 5788999999997 7999999999999999997 9999999983 222
Q ss_pred ccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCC
Q 004968 260 IEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGH 339 (721)
Q Consensus 260 ~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGh 339 (721)
+.. ..++. ..-..+++++|+..+ .|||+
T Consensus 392 -------~~~-------~~~s~-------------------------------------~~~sd~Ak~ygiP~~-~VDG~ 419 (929)
T TIGR00239 392 -------NPL-------DARST-------------------------------------PYCSDLAKMIQAPIF-HVNAD 419 (929)
T ss_pred -------cHH-------HhcCc-------------------------------------cCHHHHheecCCCEE-EECCC
Confidence 100 00000 001235678898887 89999
Q ss_pred CHHHHHHHHHHHHhc--CCCCCEEEEEEEeccCCCccccccc--cc---ccc--c--------------ccC--------
Q 004968 340 NIEDLISVLQEVASL--GSMGPVLVHVVTEENRRAEDTQKSE--AI---EKQ--Q--------------EGA-------- 388 (721)
Q Consensus 340 d~~~l~~al~~a~~~--~~~~P~lI~v~T~kg~G~~~ae~~~--~~---~~~--H--------------g~~-------- 388 (721)
|++++.++.+.|.+. +.++|++|++.|.+-+|+...+... .+ ..+ | |+.
T Consensus 420 D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~~GHne~D~p~~yrp~~~~~i~~~~dPi~~~~~~Li~~Gv~te~e~~~i 499 (929)
T TIGR00239 420 DPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSATQPLMYQKIKKHPTPRKVYADKLVSEGVATEEDVTEM 499 (929)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEEEeccCCCCCCCCCCccCCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHH
Confidence 999998888766432 2579999999999988875433200 00 000 1 000
Q ss_pred --------------------------------------CCCCCCC-------------CC--------------------
Q 004968 389 --------------------------------------SDSNSLP-------------FG-------------------- 397 (721)
Q Consensus 389 --------------------------------------~f~~g~~-------------~~-------------------- 397 (721)
.+.||-+ .+
T Consensus 500 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~l~~~~~~~P~~f~~h~~~~k~~~~R~~~~ 579 (929)
T TIGR00239 500 VNLYRDALEAADCVVPSWREMNTASFTWSPELNHEWDEEYPNKVEMKRLQELAKRISEVPEGVEMHSRVAKIYFDRTKAM 579 (929)
T ss_pred HHHHHHHHHHHHHhhhccCCccccccccccccccccccCCCCCCCHHHHHHHHHHhccCCCCccccHHHHHHHHHHHHHH
Confidence 0001100 00
Q ss_pred ---CCcccHHHHHHHHHHHHHHcCCCeEEEecCCCCcc-----------------C-hHHHHHhC-CCcEeeccccHHHH
Q 004968 398 ---NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDL-----------------S-LQLFQEKF-PERYFDVGMAEQHA 455 (721)
Q Consensus 398 ---~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~-----------------~-l~~f~~~f-p~R~~d~GIaE~~~ 455 (721)
....+|.+|...++.+++++|++|+++++|++.|+ + +.++.++| |.|++|++|+|.++
T Consensus 580 ~~g~~~~~~~~A~~~A~~~~l~~~~~V~l~GeDv~rGtFshRHavl~dq~~g~~~~~~~~l~~~~g~~rV~nsplSE~a~ 659 (929)
T TIGR00239 580 AAGEKLFDWGGAENLAFATLVDDGIPVRLSGEDSERGTFFQRHAVLHDQSNGSTYTPLQHLHNGQGAFRVWNSVLSEESV 659 (929)
T ss_pred hcCCCCccHHHHHHHHHHHHHhcCCCEEEEeeeCCCcccccccccccccccCceeecccchhhhcCCeeEEcCCccHHHH
Confidence 01146889999999999999999999999997542 1 36777788 78999999999999
Q ss_pred HHHHHHHHhCCCeeE--EEe-cHhhHH---HHHHHHHHH-hhcC--CcceEEEEcCCCCcCCCCCCcCcHHHHHHH--cc
Q 004968 456 VTFSAGLACGGLKPF--CII-PSAFLQ---RAYDQVVND-VDQQ--RLPVRFVITSAGLVGSDGPTQCGAFDITFM--SC 524 (721)
Q Consensus 456 v~~AaGlA~~G~~p~--~~t-ys~Fl~---ra~dqi~~~-~a~~--~lpVv~v~~~~G~~G~dG~TH~~~~dia~~--~~ 524 (721)
+|++.|+|+.|.+|+ ++. |.+|+. .++||+++. .++. ..++|+...++ ..|..+..|++..+ +|+ .+
T Consensus 660 ~G~~~G~a~~g~~~l~i~E~qfgDF~~~AQv~~Dq~i~~~~~K~~~~sglv~~~p~G-~~g~g~~hsS~~~E-~~lql~~ 737 (929)
T TIGR00239 660 LGFEYGYATTSPRTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGQMSGLVMLLPHG-YEGQGPEHSSGRLE-RFLQLAA 737 (929)
T ss_pred HHHHHhHHhcCCCCceEEEEeccchhcchHHHHHHHHHHHHHHhcCccCeEEEecCc-CCCCCchhhccCHH-HHHHHhC
Confidence 999999999998885 766 999984 779999888 3443 45677777765 33554556665776 677 78
Q ss_pred CCCcEEEeeCCHHHHHHHHH-HHHHhCCCCEEEEecCCCcccc-------cCCCCCCcceecCceE-----EEEeCCcEE
Q 004968 525 LPNMIVMAPSDEDELVDMVA-TVASIDDRPVCFRYPRGAIVRT-------DLPGYRGIPIEIGKGK-----VLVEGKDVA 591 (721)
Q Consensus 525 iPnl~V~~Psd~~E~~~~l~-~a~~~~~~P~~ir~~r~~~~~~-------~~p~~~~~~~~~gk~~-----vl~eG~dv~ 591 (721)
.|||+|+.|++|.|++++|+ .|+...++|++|..|+..+... ++|+. .+..++++.. +.+++-+.+
T Consensus 738 ~~gl~Vv~pstpad~~~lLrrqa~r~~~~Pvi~~~~K~L~r~~~a~S~~~e~~~~-~f~~~i~~~~~~~~~~~~~~v~~v 816 (929)
T TIGR00239 738 EQNMQVCVPTTPAQVFHILRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELAEG-TFQPVIGEIEESGLSLDPEGVKRL 816 (929)
T ss_pred CCCCEEEecCCHHHHHHHHHHHHHhCCCCCEEEeccHhhhcCccccCccccCCCC-CcccccccccccccccCccCCcEE
Confidence 99999999999999999999 5765348999999998765321 34432 2344454321 122333444
Q ss_pred EEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCC----eEEEEcCCCC-CChHHHHHHHHHhcCC
Q 004968 592 LLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHT----FLITVEEGSI-GGFGSHVSHFIALDGL 666 (721)
Q Consensus 592 Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~----~vvvvEe~~~-gG~gs~v~~~l~~~~~ 666 (721)
|+++| ++..++.+ +.++++|++++|||+++|+|||.++|.++++++. .|++=||... |.|. .|...|...
T Consensus 817 v~~sg-~v~~~l~~-~~~~~~~~~v~iirle~L~Pf~~~~i~~sl~k~~~~~~~vw~qEep~n~Gaw~-~v~~rl~~~-- 891 (929)
T TIGR00239 817 VLCSG-KVYYDLHE-QRRKNGQKDVAIVRIEQLYPFPHKAVKEVLQQYPNLKEIVWCQEEPLNMGAWY-YSQPHLREV-- 891 (929)
T ss_pred EEECc-hHHHHHHH-HHHhcCCCCEEEEEeeeeCCCCHHHHHHHHHhcCCCCeEEEEeccCCCCCCHH-HHHHHHHHH--
Confidence 55555 88888887 6777789999999999999999999999888774 4455556554 6554 665555532
Q ss_pred CCCCCceEEEecCCcccc
Q 004968 667 LDSGVKWRPIVLPDNYIE 684 (721)
Q Consensus 667 ~~~~~~~~~~g~~d~f~~ 684 (721)
+....+++-+|-|..-.+
T Consensus 892 l~~~~~l~y~gR~~~asp 909 (929)
T TIGR00239 892 IPEGVSVRYAGRPASASP 909 (929)
T ss_pred hccCCceEEeCCCCCCCC
Confidence 110124666676554333
|
The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase. |
| >COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-39 Score=312.49 Aligned_cols=222 Identities=22% Similarity=0.362 Sum_probs=193.2
Q ss_pred CCHHHHHHHHHHHHHHHHHhHh-cCCCCCCCcccHHHHHHHHhcc---cC--C----CCcEEEecCCchH---HHHHHHh
Q 004968 94 LTIKELKQLAVEIRSELSSIVS-KTEKSLKSSLAAVELTVALHHV---FH--A----PVDKILWDVGEQT---YAHKILT 160 (721)
Q Consensus 94 ~~~~~l~~la~eiR~~~~~~~~-~~~Gh~~sslg~vel~~aL~~v---f~--~----p~D~iv~d~GH~~---y~h~~lt 160 (721)
++..+|.+.|.++|+.+++++. ...||+|+|||++|++.+||+. ++ . .+|+||+|+||.+ |+.....
T Consensus 5 ~~~~~L~~~A~~iRr~~v~m~~~~~~GH~G~SLS~~eILa~LYf~~m~~~p~~p~~~~RDrfiLSKGHaa~AlYa~Lae~ 84 (243)
T COG3959 5 LSVDELERIAREIRRNIVRMLANAGSGHVGGSLSVVEILAVLYFKIMNIDPDDPKWPGRDRFILSKGHAAPALYATLAEK 84 (243)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcccCCCCcCccchHHHHHHHHHHHHhccCCCCCCCCCCCeEEEecccchHHHHHHHHHc
Confidence 6788999999999999999987 4568999999999999999975 33 1 2799999999998 8888899
Q ss_pred Cc--hhhhHHHHhhCC-CCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHH
Q 004968 161 GR--RSLIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSN 237 (721)
Q Consensus 161 Gr--~~~~~~~r~~gg-l~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~ 237 (721)
|. .++++++++.++ ++|||.+...|.....+|++|++||+|+|||+|.|+++.+.+|+++.|||+++||++|||+.+
T Consensus 85 G~~p~eeL~~~~~~~srL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~EG~~WEAam~ 164 (243)
T COG3959 85 GYFPEEELETFRRIGSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELDEGQVWEAAMT 164 (243)
T ss_pred CCCCHHHHHHhccCCCcCCCCCccCCCCceeecCCcccccchHHHHHHHHHhhcCCCceEEEEecCcccccccHHHHHHH
Confidence 97 778999999997 999999988899999999999999999999999999999999999999999999999999999
Q ss_pred hhhcC-CCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcc
Q 004968 238 AGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM 316 (721)
Q Consensus 238 A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 316 (721)
|++++ .|||.||+.|+.+ .+...-.+ . +.
T Consensus 165 Aah~~L~NLiaivD~N~~Q--------ldG~t~~i-----------------------~-----~~-------------- 194 (243)
T COG3959 165 AAHYKLDNLIAIVDRNKLQ--------LDGETEEI-----------------------M-----PK-------------- 194 (243)
T ss_pred HHHhccCcEEEEEecCCcc--------cCCchhhc-----------------------c-----Cc--------------
Confidence 99999 8999999999975 11111100 0 00
Q ss_pred cCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEecc
Q 004968 317 IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEEN 369 (721)
Q Consensus 317 ~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg 369 (721)
.+....||+|||+++ .|||||++++.+++++++.. .++|++|+++|+||
T Consensus 195 --~pL~~k~eAFGw~V~-evdG~d~~~i~~a~~~~~~~-~~rP~~IIa~Tvkg 243 (243)
T COG3959 195 --EPLADKWEAFGWEVI-EVDGHDIEEIVEALEKAKGS-KGRPTVIIAKTVKG 243 (243)
T ss_pred --chhHHHHHhcCceEE-EEcCcCHHHHHHHHHhhhcc-CCCCeEEEEecccC
Confidence 112457999999998 89999999999999999875 34999999999986
|
|
| >KOG0525 consensus Branched chain alpha-keto acid dehydrogenase E1, beta subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-38 Score=306.87 Aligned_cols=304 Identities=23% Similarity=0.316 Sum_probs=253.7
Q ss_pred CcccHHHHHHHHHHHHHHcCCCeEEEecCCCCc--c-ChHHHHHhCC-CcEeeccccHHHHHHHHHHHHhCCCeeEEEe-
Q 004968 399 YSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMD--L-SLQLFQEKFP-ERYFDVGMAEQHAVTFSAGLACGGLKPFCII- 473 (721)
Q Consensus 399 ~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~--~-~l~~f~~~fp-~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~t- 473 (721)
++.+..+++.++|.-.++.||+-+++++|++-| + -..+++++|. +|+||++++||+++|+..|+|..|.+.+.++
T Consensus 39 ~~mnl~qsvn~al~ial~tdp~a~vfgedv~fggvfrct~gl~~kfgk~rvfntplceqgivgfgig~aa~g~~aiaeiq 118 (362)
T KOG0525|consen 39 KKMNLYQSVNQALHIALETDPRAVVFGEDVAFGGVFRCTTGLAEKFGKDRVFNTPLCEQGIVGFGIGLAAMGATAIAEIQ 118 (362)
T ss_pred ccchHHHHHHHHHHHHhhcCCceEEeccccccceEEEeecchHHHhCccccccCchhhcccceechhhhhcccceEEEEe
Confidence 457788999999999999999999999998733 1 1357888885 7999999999999999999999999999999
Q ss_pred cHhhHHHHHHHHHHHhhcC--------CcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 004968 474 PSAFLQRAYDQVVNDVDQQ--------RLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVAT 545 (721)
Q Consensus 474 ys~Fl~ra~dqi~~~~a~~--------~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~ 545 (721)
|++++..|||||+|.+++. ++--.-+-...|.+|..|-.|++..+ ++|.+.||++|+.|.+|.|+++++..
T Consensus 119 fadyifpafdqivneaakfryrsgnqfncg~ltir~p~gavghg~~yhsqspe-aff~h~pgikvviprsp~qakgllls 197 (362)
T KOG0525|consen 119 FADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRAPWGAVGHGALYHSQSPE-AFFCHVPGIKVVIPRSPRQAKGLLLS 197 (362)
T ss_pred eccccchhHHHHHHHHHhheeccCCccccCceEEeccccccccccccccCCch-hheecCCCceEEecCCcchhhceeee
Confidence 9999999999999999863 22222222456778998999999999 89999999999999999999999999
Q ss_pred HHHhCCCCEEEEecCCCccc--ccCCCCCCcceecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHh-CCCCeEEeecC
Q 004968 546 VASIDDRPVCFRYPRGAIVR--TDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSK-LGIDVTVADAR 622 (721)
Q Consensus 546 a~~~~~~P~~ir~~r~~~~~--~~~p~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~-~Gi~v~VId~~ 622 (721)
+++ +.+|++++.|+-.+.. .++|.. +|.++++.++++|+|+|+|||+||+.++.++|+|..-++ .|++++|||++
T Consensus 198 cir-dpnp~iffepk~lyr~a~edvp~~-dy~iplsqaevireg~ditlv~wgtqvh~i~e~a~l~~ek~giscevidlk 275 (362)
T KOG0525|consen 198 CIR-DPNPCIFFEPKILYRQAVEDVPEG-DYMIPLSQAEVIREGSDITLVAWGTQVHVIMEQACLAKEKLGISCEVIDLK 275 (362)
T ss_pred ecc-CCCceEEechHHHHHHhhhhCCCC-CccccccHHHHhhcCCceEEEEcchhhHHHHHHHHhhHHhcCCceEEEeee
Confidence 985 8999999999865432 356653 788999999999999999999999999999999887654 59999999999
Q ss_pred ccccccHHHHHHHhccCCeE-EEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHH-HcCCCHH
Q 004968 623 FCKPLDIKLVRELCQNHTFL-ITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLA-LAGLTGH 700 (721)
Q Consensus 623 ~l~PlD~e~i~~l~~~~~~v-vvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~-~~gl~~~ 700 (721)
+|-|||++.+.+++++++++ |+.|...+||||++|++.+.+++|+....++.++..-|.+.++ +.| .|-.+..
T Consensus 276 ti~pwd~d~v~~sv~ktgrllisheapvtggfgaeiastv~ercfl~leapisrvcg~dtpfp~-----vfepfy~ptk~ 350 (362)
T KOG0525|consen 276 TIIPWDKDTVEESVQKTGRLLISHEAPVTGGFGAEIASTVQERCFLNLEAPISRVCGLDTPFPH-----VFEPFYMPTKN 350 (362)
T ss_pred cccCccHHHHHHHHHhhceEEEeccCCccCcchHHHHHHHHHHHHhhccCchhhhccCCCCCcc-----cccccccCcHh
Confidence 99999999999988776655 5566666999999999999999997666666666555665554 122 3445889
Q ss_pred HHHHHHHHHh
Q 004968 701 HIAATALSLL 710 (721)
Q Consensus 701 ~I~~~i~~~l 710 (721)
.|.++|++.+
T Consensus 351 ki~daik~~v 360 (362)
T KOG0525|consen 351 KILDAIKKTV 360 (362)
T ss_pred HHHHHHHHhc
Confidence 9999998765
|
|
| >PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=333.23 Aligned_cols=232 Identities=22% Similarity=0.314 Sum_probs=185.5
Q ss_pred HHHHHHHHHHHHHhHh-cCCCCCCCcccHHHHHHHHhcc-cC----CC----CcEEEecCCchH---HHHHHHhCc---h
Q 004968 100 KQLAVEIRSELSSIVS-KTEKSLKSSLAAVELTVALHHV-FH----AP----VDKILWDVGEQT---YAHKILTGR---R 163 (721)
Q Consensus 100 ~~la~eiR~~~~~~~~-~~~Gh~~sslg~vel~~aL~~v-f~----~p----~D~iv~d~GH~~---y~h~~ltGr---~ 163 (721)
+.+|+++|..+++++. ..+||+|+++|+++++.+||.. ++ .| +|+||+|+||.+ |+...+.|+ .
T Consensus 2 ~~~a~~iR~~~~~~~~~a~sGH~G~~ls~a~i~~~Ly~~~l~~~p~~p~~~~rDrfvlSkGH~~~~lYa~l~~~G~~~~~ 81 (332)
T PF00456_consen 2 KRIANTIRKLILDMVQKAGSGHPGSSLSAADILYALYFKVLRYDPKNPKWPNRDRFVLSKGHASPALYAILALRGYDLSE 81 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHT-S-SHHHHHHHHHHHHHHHHT-BBBTTBTTSTTS-EEEESSGGGHHHHHHHHHHTTSSS-H
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHhhccccCCccccCCCCCcEEEeccchhHHHHHHHHHhcCCCCH
Confidence 5689999999999997 4789999999999999999963 32 23 799999999999 888899997 4
Q ss_pred hhhHHHHhhCC-CCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcC----------CCCeEEEEEcCCCcccchHH
Q 004968 164 SLIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKG----------KRECIVTVISNGTTMAGQAY 232 (721)
Q Consensus 164 ~~~~~~r~~gg-l~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g----------~~~~VvaviGDGal~~G~~~ 232 (721)
+++.++|++++ ++|||.....+...+++|++|+|++.|+|||+|.|+++ .+++|+|++|||+++||.+|
T Consensus 82 ~~L~~fr~~~s~~~gHP~~~~~~gie~stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~ 161 (332)
T PF00456_consen 82 EDLKTFRQLGSRLPGHPEYGKTPGIEASTGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVW 161 (332)
T ss_dssp HHHTTTTSTTSSSSSSTTTTTSTT-SS--SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHH
T ss_pred HHHHHhccCCCCCCCCCcccCCceeEeeccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccccchhhH
Confidence 56888999886 88999977788888999999999999999999998753 36789999999999999999
Q ss_pred HHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHH
Q 004968 233 EAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDE 311 (721)
Q Consensus 233 Ealn~A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~ 311 (721)
||+.+|++++ .|||+|+++|+++ ++.++... + ...
T Consensus 162 EA~~~A~~~~L~nLi~i~D~N~~q--------~dg~~~~~---~--------------------------~~~------- 197 (332)
T PF00456_consen 162 EAASLAGHYKLDNLIVIYDSNGIQ--------IDGPTDIV---F--------------------------SED------- 197 (332)
T ss_dssp HHHHHHHHTT-TTEEEEEEEESEE--------TTEEGGGT---H--------------------------HSH-------
T ss_pred HHHHHHHHhCCCCEEEEEecCCcc--------cCCCcccc---c--------------------------chH-------
Confidence 9999999999 7899999999974 22222100 0 000
Q ss_pred HhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccccC
Q 004968 312 YARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGA 388 (721)
Q Consensus 312 ~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~ 388 (721)
....|++|||+++.+.||||+++|.++|++++.. .++|++|+++|+||+|++.+|+ ..+|||.+
T Consensus 198 ---------~~~k~~a~Gw~v~~v~dGhd~~~i~~A~~~a~~~-~~kP~~Ii~~TvkG~G~~~~e~---~~~~Hg~~ 261 (332)
T PF00456_consen 198 ---------IAKKFEAFGWNVIEVCDGHDVEAIYAAIEEAKAS-KGKPTVIIARTVKGKGVPFMEG---TAKWHGSP 261 (332)
T ss_dssp ---------HHHHHHHTT-EEEEEEETTBHHHHHHHHHHHHHS-TSS-EEEEEEE-TTTTSTTTTT---SGGGTSS-
T ss_pred ---------HHHHHHHhhhhhcccccCcHHHHHHHHHHHHHhc-CCCCceeecceEEecCchhhcc---cchhhccC
Confidence 1246899999999556999999999999999874 4899999999999999999885 88999964
|
2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A .... |
| >cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=323.96 Aligned_cols=230 Identities=15% Similarity=0.163 Sum_probs=190.5
Q ss_pred HHHHHHHHHHHHHhHhcC-------CCCCCCcccHHHHHHHHhc-ccCC-----CCcEEEecCCchH---HHHHHHhCc-
Q 004968 100 KQLAVEIRSELSSIVSKT-------EKSLKSSLAAVELTVALHH-VFHA-----PVDKILWDVGEQT---YAHKILTGR- 162 (721)
Q Consensus 100 ~~la~eiR~~~~~~~~~~-------~Gh~~sslg~vel~~aL~~-vf~~-----p~D~iv~d~GH~~---y~h~~ltGr- 162 (721)
.++.+.+|..+++++.+. +||+++++|+++++++||+ +++. ++|+ |+++||++ |++++++|+
T Consensus 5 ~~~~~~iR~~i~~mv~~a~s~~~~~gGH~G~slS~adI~~aLy~~~l~~~p~~~~RDR-vlSkGHas~~lYA~L~l~G~~ 83 (386)
T cd02017 5 RRIRSLIRWNAMAMVHRANKKDLGIGGHIATFASAATLYEVGFNHFFRARGEGGGGDL-VYFQGHASPGIYARAFLEGRL 83 (386)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcccCCCCCcchhHHHHHHHHHHHhcCCCCCCCCCCE-EEeCCcccHHHHHHHHHcCCC
Confidence 456788999999999743 3999999999999999984 5652 3899 66799999 999999998
Q ss_pred -hhhhHHHHhhCC---CCCCCCCCCCCC-CCcCcCCCcchHHHHHHHHHHHHH-------cCCCCeEEEEEcCCCcccch
Q 004968 163 -RSLIHTLRKKDG---ISGYTSRSESEY-DPFNAGHGCNSVSAGLGMAVARDI-------KGKRECIVTVISNGTTMAGQ 230 (721)
Q Consensus 163 -~~~~~~~r~~gg---l~G~~~~~es~~-d~~~~G~~G~~is~A~G~AlA~~l-------~g~~~~VvaviGDGal~~G~ 230 (721)
.+++.++|++++ +++||++.+++. ..+++|++|+|++.|+|||+|.|+ .+.+++|||++|||+++||+
T Consensus 84 ~~edL~~fr~~gs~p~l~g~p~~~~~~~gve~sTGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~ 163 (386)
T cd02017 84 TEEQLDNFRQEVGGGGLSSYPHPWLMPDFWEFPTVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPE 163 (386)
T ss_pred CHHHHHhhccCCCCCCCCCCCCCCCCCCCeeeCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHH
Confidence 478999999998 899998876554 678899999999999999999997 56789999999999999999
Q ss_pred HHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHH
Q 004968 231 AYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKV 309 (721)
Q Consensus 231 ~~Ealn~A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~ 309 (721)
+|||+++|++++ .|||+|+++|+++ ++.++..+.. ....
T Consensus 164 vwEA~~~Ag~~kL~NLivIvD~N~~q--------idG~t~~v~~---------------------------~~e~----- 203 (386)
T cd02017 164 SLGAIGLAAREKLDNLIFVVNCNLQR--------LDGPVRGNGK---------------------------IIQE----- 203 (386)
T ss_pred HHHHHHHHHHhCCCCEEEEEECCCCc--------cCCccccccc---------------------------Cchh-----
Confidence 999999999999 7999999999984 2323221100 0001
Q ss_pred HHHhhcccCCCccceeeeeCceEEeccC----------------------------------------------------
Q 004968 310 DEYARGMIGPQGSTLFEELGLYYIGPVD---------------------------------------------------- 337 (721)
Q Consensus 310 ~~~~~~~~~~~~~~l~ea~G~~~~g~vd---------------------------------------------------- 337 (721)
....|++|||+++ .||
T Consensus 204 -----------l~~kf~AfGW~vi-~V~~g~~~~~~f~~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l~~~~~~~~ 271 (386)
T cd02017 204 -----------LEGIFRGAGWNVI-KVIWGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVREHFFGKYPELK 271 (386)
T ss_pred -----------HHHHHHhcCCEEE-EEecCCcchhhhccCcchHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHH
Confidence 1346788888887 465
Q ss_pred -----------------CCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcc-cccccccccccc
Q 004968 338 -----------------GHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAED-TQKSEAIEKQQE 386 (721)
Q Consensus 338 -----------------Ghd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~-ae~~~~~~~~Hg 386 (721)
|||+++|.+||++++.. .++|++|+++|+||+|.++ +|+ ..+||+
T Consensus 272 ~~~~~~~d~~~~~~~~gGhD~~~i~~A~~~a~~~-~~kPt~Iia~TikG~G~~~~~e~---~~~~h~ 334 (386)
T cd02017 272 ALVTDLSDEDLWALNRGGHDPRKVYAAYKKAVEH-KGKPTVILAKTIKGYGLGAAGEG---RNHAHQ 334 (386)
T ss_pred HHhhcccHHhhhhhccCCCCHHHHHHHHHHHHhC-CCCCeEEEEeCeecCCCChhccC---Ccchhc
Confidence 99999999999999864 4789999999999999984 664 788996
|
coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme. |
| >cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=313.22 Aligned_cols=228 Identities=21% Similarity=0.301 Sum_probs=194.1
Q ss_pred HHHHHHHHHhHh-cCCCCCCCcccHHHHHHHHhccc-C--------CCCcEEEecCCchH---HHHHHHhCc--hhhhHH
Q 004968 104 VEIRSELSSIVS-KTEKSLKSSLAAVELTVALHHVF-H--------APVDKILWDVGEQT---YAHKILTGR--RSLIHT 168 (721)
Q Consensus 104 ~eiR~~~~~~~~-~~~Gh~~sslg~vel~~aL~~vf-~--------~p~D~iv~d~GH~~---y~h~~ltGr--~~~~~~ 168 (721)
+++|..+++++. ..+||+++++|++|++.+||+.+ + .++|+||+++||++ |+++.++|+ .+++.+
T Consensus 1 ~~~R~~~~~~~~~~~~gh~g~~~s~~~i~~~L~~~~~~~~~~~~~~~~rd~~v~s~gH~~~~~ya~l~~~g~~~~~~l~~ 80 (255)
T cd02012 1 NRIRRLSIDMVQKAGSGHPGGSLSAADILAVLYFKVLKYDPADPKWPNRDRFVLSKGHASPALYAVLALAGYLPEEDLKT 80 (255)
T ss_pred ChHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHHHHhCcCCcCCCCCCCCeEEEcCCcHHHHHHHHHHHcCCCCHHHHHH
Confidence 368999999997 47899999999999999999753 2 23799999999999 778899998 478999
Q ss_pred HHhhCC-CCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCC-CEE
Q 004968 169 LRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDS-NMI 246 (721)
Q Consensus 169 ~r~~gg-l~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~-pli 246 (721)
+|+.++ +.|||.+..+++..+++|++|+++|+|+|+|+|.++.+++++|||++|||++++|++||++++|+.+++ |++
T Consensus 81 ~~~~gs~l~gh~~~~~~~g~~~~~GslG~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li 160 (255)
T cd02012 81 FRQLGSRLPGHPEYGLTPGVEVTTGSLGQGLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLI 160 (255)
T ss_pred hcccCCCCCCCCCCCCCCCeeeCCcchhhHHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEE
Confidence 999985 999999888888889999999999999999999999999999999999999999999999999999995 699
Q ss_pred EEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceee
Q 004968 247 VILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFE 326 (721)
Q Consensus 247 vIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~e 326 (721)
+|+|||+++ + +.+.... . ...+...+++
T Consensus 161 ~vvdnN~~~-~-------~~~~~~~--------------------------~------------------~~~~~~~~~~ 188 (255)
T cd02012 161 AIVDSNRIQ-I-------DGPTDDI--------------------------L------------------FTEDLAKKFE 188 (255)
T ss_pred EEEECCCcc-c-------cCcHhhc--------------------------c------------------CchhHHHHHH
Confidence 999999983 1 1111000 0 0011245789
Q ss_pred eeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccccC
Q 004968 327 ELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGA 388 (721)
Q Consensus 327 a~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~ 388 (721)
+|||+++ .+||||+++|.++|+++++. .++|++|+++|.||+|++++|+ ..+||+..
T Consensus 189 a~G~~~~-~v~G~d~~~l~~al~~a~~~-~~~P~~I~~~t~kg~g~~~~e~---~~~~H~~~ 245 (255)
T cd02012 189 AFGWNVI-EVDGHDVEEILAALEEAKKS-KGKPTLIIAKTIKGKGVPFMEN---TAKWHGKP 245 (255)
T ss_pred HcCCeEE-EECCCCHHHHHHHHHHHHHc-CCCCEEEEEEeecccccCccCC---CccccCCC
Confidence 9999998 78999999999999999873 3789999999999999999885 78999864
|
In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity. |
| >cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=285.64 Aligned_cols=154 Identities=48% Similarity=0.738 Sum_probs=148.1
Q ss_pred HHHHHHHHHHHcCCCeEEEecCCCCccChHHHHHhCCCcEeeccccHHHHHHHHHHHHhCCCeeEEEecHhhHHHHHHHH
Q 004968 406 CFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQV 485 (721)
Q Consensus 406 ~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~tys~Fl~ra~dqi 485 (721)
+++++|.+++++||+++++++|++.++++.+|+++||+||||+||+|++++++|+|+|+.|++||+++|..|++|++|||
T Consensus 2 ~~~~~l~~~~~~~~~~v~~~~Dl~~~~~~~~~~~~~p~r~i~~gIaE~~~vg~A~GlA~~G~~pi~~~~~~f~~ra~dqi 81 (156)
T cd07033 2 AFGEALLELAKKDPRIVALSADLGGSTGLDKFAKKFPDRFIDVGIAEQNMVGIAAGLALHGLKPFVSTFSFFLQRAYDQI 81 (156)
T ss_pred hHHHHHHHHHhhCCCEEEEECCCCCCCCcHHHHHhCCCCeEEeChhHHHHHHHHHHHHHCCCeEEEEECHHHHHHHHHHH
Confidence 68899999999999999999999988889999999999999999999999999999999999999999998999999999
Q ss_pred HHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEecC
Q 004968 486 VNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPR 560 (721)
Q Consensus 486 ~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~~r 560 (721)
+++++++++||+++++++|+ .|.+|+|||+.+|+++++++||++|++|+|++|++.++++|++ .++|+|||++|
T Consensus 82 ~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~~~~~~a~~~~iPg~~v~~Ps~~~~~~~ll~~a~~-~~~P~~irl~~ 156 (156)
T cd07033 82 RHDVALQNLPVKFVGTHAGISVGEDGPTHQGIEDIALLRAIPNMTVLRPADANETAAALEAALE-YDGPVYIRLPR 156 (156)
T ss_pred HHHHhccCCCeEEEEECCcEecCCCCcccchHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHh-CCCCEEEEeeC
Confidence 99999999999999999988 5699999999999999999999999999999999999999997 57899999986
|
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included |
| >cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=268.88 Aligned_cols=153 Identities=25% Similarity=0.367 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHcCCCeEEEecCCCCc----cChHHHHHhCCC-cEeeccccHHHHHHHHHHHHhCCCeeEEE-ecHhhH
Q 004968 405 DCFIEALVMEAEKDKDIVVVHAGMEMD----LSLQLFQEKFPE-RYFDVGMAEQHAVTFSAGLACGGLKPFCI-IPSAFL 478 (721)
Q Consensus 405 ~~~~~~L~~~~~~d~~iv~i~ad~~~~----~~l~~f~~~fp~-R~~d~GIaE~~~v~~AaGlA~~G~~p~~~-tys~Fl 478 (721)
++++++|.+++++||+++++++|+..+ ..+++|+++||+ ||||+||+||+++++|+|||++|++||++ +|++|+
T Consensus 1 ~~~~~~l~~~~~~~~~vv~l~~D~~~~~g~~~~~~~~~~~~p~~R~~~~gIaEq~~vg~AaGlA~~G~~pi~~~~~a~Fl 80 (167)
T cd07036 1 QAINEALDEEMERDPRVVVLGEDVGDYGGVFKVTKGLLDKFGPDRVIDTPIAEAGIVGLAVGAAMNGLRPIVEIMFADFA 80 (167)
T ss_pred CHHHHHHHHHHhcCCCEEEECcccccCCCcchHhHHHHHhCCCceEEeCCCcHHHHHHHHHHHHHcCCEEEEEeehHHHH
Confidence 378999999999999999999998642 246899999999 99999999999999999999999999998 699999
Q ss_pred HHHHHHHHHHhhcC--------CcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhC
Q 004968 479 QRAYDQVVNDVDQQ--------RLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASID 550 (721)
Q Consensus 479 ~ra~dqi~~~~a~~--------~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~ 550 (721)
+|++|||++++|++ ++||+++..++| .+.+|+||+ .+|+++|+++|||+|++|+|+.|++.+++++++ .
T Consensus 81 ~ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg-~~~~G~ths-~~~~a~lr~iPg~~V~~Psd~~e~~~~l~~~~~-~ 157 (167)
T cd07036 81 LPAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGG-GIGGGAQHS-QSLEAWFAHIPGLKVVAPSTPYDAKGLLKAAIR-D 157 (167)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCC-CCCcChhhh-hhHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh-C
Confidence 99999999999986 599999997666 567899976 567899999999999999999999999999986 6
Q ss_pred CCCEEEEecC
Q 004968 551 DRPVCFRYPR 560 (721)
Q Consensus 551 ~~P~~ir~~r 560 (721)
++|++|++||
T Consensus 158 ~~P~~~~e~k 167 (167)
T cd07036 158 DDPVIFLEHK 167 (167)
T ss_pred CCcEEEEecC
Confidence 7999999875
|
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain |
| >PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2 | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-32 Score=271.53 Aligned_cols=164 Identities=37% Similarity=0.509 Sum_probs=146.1
Q ss_pred cccHHHHHHHHHHHHHHcCCCeEEEecCCCCccChHHHHHhC---CCcEeeccccHHHHHHHHHHHHhCC--CeeEEEec
Q 004968 400 SRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKF---PERYFDVGMAEQHAVTFSAGLACGG--LKPFCIIP 474 (721)
Q Consensus 400 ~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~f---p~R~~d~GIaE~~~v~~AaGlA~~G--~~p~~~ty 474 (721)
+.+|+++|+++|.+++++||+|+++++|+++++....+.+.+ |+||||+||+|++++++|+|+|++| ++||+.+|
T Consensus 2 k~~~~~a~~~~l~~~~~~d~~vv~~~~D~~~~~~~~~~~~~~~~~~~r~i~~gIaE~~~vg~a~GlA~~G~~~~~~~~~f 81 (178)
T PF02779_consen 2 KISMRDAFGEALAELAEEDPRVVVIGADLGGGTFGVTFGLAFPFGPGRFINTGIAEQNMVGMAAGLALAGGLRPPVESTF 81 (178)
T ss_dssp EEEHHHHHHHHHHHHHHHTTTEEEEESSTHHHHTSTTTTHHBHHTTTTEEE--S-HHHHHHHHHHHHHHSSSEEEEEEEE
T ss_pred CccHHHHHHHHHHHHHhhCCCEEEEECCcCcchhhhhhhccccCCCceEEecCcchhhccceeeeeeecccccceeEeec
Confidence 468999999999999999999999999999888776555555 4599999999999999999999999 77788889
Q ss_pred HhhHH----HHHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHh
Q 004968 475 SAFLQ----RAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI 549 (721)
Q Consensus 475 s~Fl~----ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~ 549 (721)
++|++ |+++|++++.+++++||. ++.++|+ .|.+|+|||+.+|+++++++||++|++|+|+.|++.++++++++
T Consensus 82 ~~F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g~~~~~~G~tH~s~~d~~~~~~iPg~~v~~Psd~~e~~~~l~~a~~~ 160 (178)
T PF02779_consen 82 ADFLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAGLGYGGDGGTHHSIEDEAILRSIPGMKVVVPSDPAEAKGLLRAAIRR 160 (178)
T ss_dssp GGGGGGGHHHHHHHHHHHHHHHTS-EE-EEEEESGGGSTTGTTTSSSSHHHHHHTSTTEEEEE-SSHHHHHHHHHHHHHS
T ss_pred cccccccchhhhhhhhhhhhcccceec-ceeecCcccccccccccccccccccccccccccccCCCHHHHHHHHHHHHHh
Confidence 99999 999999999999999999 7888888 78999999999999999999999999999999999999999975
Q ss_pred -CCCCEEEEecCCCcc
Q 004968 550 -DDRPVCFRYPRGAIV 564 (721)
Q Consensus 550 -~~~P~~ir~~r~~~~ 564 (721)
.++|+|||++|+.++
T Consensus 161 ~~~~P~~ir~~r~~~~ 176 (178)
T PF02779_consen 161 ESDGPVYIREPRGLYP 176 (178)
T ss_dssp SSSSEEEEEEESSEES
T ss_pred CCCCeEEEEeeHHhCC
Confidence 589999999998753
|
2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B .... |
| >smart00861 Transket_pyr Transketolase, pyrimidine binding domain | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.6e-29 Score=243.15 Aligned_cols=159 Identities=36% Similarity=0.503 Sum_probs=139.8
Q ss_pred cHHHHHHHHHHHHHHcCC-CeEEEecCCCCccChHHHHHhCCCc-------EeeccccHHHHHHHHHHHHhCCCeeEEEe
Q 004968 402 TYDDCFIEALVMEAEKDK-DIVVVHAGMEMDLSLQLFQEKFPER-------YFDVGMAEQHAVTFSAGLACGGLKPFCII 473 (721)
Q Consensus 402 ~~~~~~~~~L~~~~~~d~-~iv~i~ad~~~~~~l~~f~~~fp~R-------~~d~GIaE~~~v~~AaGlA~~G~~p~~~t 473 (721)
++++++.++|.+++++|+ +++++++|+..++++.. .+.||+| |+|+||+|++++++|+|+|++|++||+++
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~v~~~~~D~~~~~~~~~-~~~~~~~~~~~~~R~~~~gIaE~~~vg~a~GlA~~G~~pi~~~ 79 (168)
T smart00861 1 ATRKAFGEALAELAERDPERVVVSGADVGGSTGLDR-GGVFPDTKGLGPGRVIDTGIAEQAMVGFAAGLALAGLRPVVAI 79 (168)
T ss_pred CHHHHHHHHHHHHHhhCCCcEEEEehhhCcCcCCCc-CCccCCCCCCCCccEEEcCcCHHHHHHHHHHHHHcCCCcEEEe
Confidence 468899999999999955 99999999988777653 5667765 99999999999999999999999999999
Q ss_pred cHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCC
Q 004968 474 PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRP 553 (721)
Q Consensus 474 ys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P 553 (721)
|+.|+.|++||+++++++++.|+++..+.++..|.+|+|||+.+|+++++.+||++|+.|+|++|++.++++++...++|
T Consensus 80 ~~~f~~~a~~~~~~~~~~~~~~~v~~~~~g~~~g~~G~tH~~~~~~~~~~~iP~~~v~~P~~~~e~~~~l~~a~~~~~~p 159 (168)
T smart00861 80 FFTFFDRAKDQIRSDGAMGRVPVVVRHDSGGGVGEDGPTHHSQEDEALLRAIPGLKVVAPSDPAEAKGLLRAAIRRDDGP 159 (168)
T ss_pred eHHHHHHHHHHHHHhCcccCCCEEEEecCccccCCCCccccchhHHHHHhcCCCcEEEecCCHHHHHHHHHHHHhCCCCC
Confidence 99999999999999987775666555443333788999999999999999999999999999999999999999755789
Q ss_pred EEEEecCC
Q 004968 554 VCFRYPRG 561 (721)
Q Consensus 554 ~~ir~~r~ 561 (721)
++||++++
T Consensus 160 ~~i~~~~~ 167 (168)
T smart00861 160 PVIRLERK 167 (168)
T ss_pred EEEEecCC
Confidence 99999875
|
Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. |
| >COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-25 Score=238.07 Aligned_cols=228 Identities=17% Similarity=0.165 Sum_probs=165.0
Q ss_pred CCCHHHHHHHHH---HHHHH-----HHHhHhcCCCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHHhCchh
Q 004968 93 SLTIKELKQLAV---EIRSE-----LSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRS 164 (721)
Q Consensus 93 ~~~~~~l~~la~---eiR~~-----~~~~~~~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~~ 164 (721)
+++.++|..+-+ .+|.+ .++..++.+|..++++|+-.+.+++...++..+|+++. +||+++|.+.+|...
T Consensus 23 ~~~~~~l~~~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~~~aL~~~~D~i~~--~YR~h~~~l~~G~~~ 100 (358)
T COG1071 23 ALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRPGEDWIFP--TYRDHGHLLARGVPL 100 (358)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCcCCcccHHHHHHHHHHhcCCCCCEeec--ccCccccceecCCCH
Confidence 456666665533 33433 44444578899999999944444444444434599999 999999999999855
Q ss_pred hhHHHHhhCCCCCCCCCC-CCCC------CCcC-cCCCcchHHHHHHHHHHHHHcCCCC-eEEEEEcCCCcccchHHHHH
Q 004968 165 LIHTLRKKDGISGYTSRS-ESEY------DPFN-AGHGCNSVSAGLGMAVARDIKGKRE-CIVTVISNGTTMAGQAYEAM 235 (721)
Q Consensus 165 ~~~~~r~~ggl~G~~~~~-es~~------d~~~-~G~~G~~is~A~G~AlA~~l~g~~~-~VvaviGDGal~~G~~~Eal 235 (721)
.-....-+|...|+++++ .|.| .+++ .|.+|++++.|+|+|+|.|+++++. +++|++|||+.++|.+||+|
T Consensus 101 ~~~~a~~~G~~~g~~kGr~~~~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEal 180 (358)
T COG1071 101 KEIMAELLGKATGPCKGRGGSMHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEAL 180 (358)
T ss_pred HHHHHHHhccccCCCCCCCCcccccccccccCCCCceecccccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHHH
Confidence 322233345566766643 3554 2444 6999999999999999999999555 99999999999999999999
Q ss_pred HHhhhcCCCEEEEEECCCCC-cCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhh
Q 004968 236 SNAGYLDSNMIVILNDSRHS-LHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYAR 314 (721)
Q Consensus 236 n~A~~~~~plivIv~dN~~~-s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~ 314 (721)
|+|+.|++|+||+|+||+|. |+|...+.. . ..
T Consensus 181 N~A~v~klPvvf~ieNN~yAiSvp~~~q~~-----------------~---------------------~~--------- 213 (358)
T COG1071 181 NFAAVWKLPVVFVIENNQYAISVPRSRQTA-----------------A---------------------EI--------- 213 (358)
T ss_pred HHHHHhcCCEEEEEecCCceeecchhhccc-----------------c---------------------hh---------
Confidence 99999999999999999993 222110000 0 00
Q ss_pred cccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEEeccCCCcccc
Q 004968 315 GMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL--GSMGPVLVHVVTEENRRAEDTQ 376 (721)
Q Consensus 315 ~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~--~~~~P~lI~v~T~kg~G~~~ae 376 (721)
......++|+..+ .|||+|+.++.++.++|.+. ...+|+|||+.|.+-.|++.++
T Consensus 214 ------~~~ra~aygipgv-~VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~tYR~~~HS~sD 270 (358)
T COG1071 214 ------IAARAAAYGIPGV-RVDGNDVLAVYEAAKEAVERARAGEGPTLIEAVTYRYGGHSTSD 270 (358)
T ss_pred ------HHhhhhccCCCeE-EECCcCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeecCCCCCCC
Confidence 0123457899988 67999999988887766432 2578999999999988887765
|
|
| >CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.1e-24 Score=229.07 Aligned_cols=229 Identities=15% Similarity=0.119 Sum_probs=165.3
Q ss_pred ccccCCCCHHHHHHHHHHH---HHH---H--HHhHhcCCCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHH
Q 004968 88 PLRLKSLTIKELKQLAVEI---RSE---L--SSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKIL 159 (721)
Q Consensus 88 p~~~~~~~~~~l~~la~ei---R~~---~--~~~~~~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~l 159 (721)
+.++++++.++|.++.+.+ |.+ + +..-++..|+++++.|+-.+.+++-..+ .|+|+++. .||+++|.+.
T Consensus 11 ~~~~~~~~~~~ll~~y~~M~~~R~~e~~~~~~~~~g~i~g~~~~~~GqEa~~vg~~~al-~~~D~~~~--~yR~~~~~la 87 (341)
T CHL00149 11 NSNENNINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKLL-AETDYVCS--TYRDHVHALS 87 (341)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhC-CCCCEEEc--ccccHHHHHH
Confidence 3667788888877775443 322 1 1222345689999999944444443344 47899999 9999999999
Q ss_pred hCchhhhHHHHh-hCCCCCCCCC-CCCCC------CCcC-cCCCcchHHHHHHHHHHHHHcC-------CCCeEEEEEcC
Q 004968 160 TGRRSLIHTLRK-KDGISGYTSR-SESEY------DPFN-AGHGCNSVSAGLGMAVARDIKG-------KRECIVTVISN 223 (721)
Q Consensus 160 tGr~~~~~~~r~-~ggl~G~~~~-~es~~------d~~~-~G~~G~~is~A~G~AlA~~l~g-------~~~~VvaviGD 223 (721)
.|....- .+.+ +|...|+.++ ..|.| ..++ .|++|+++|+|+|+|+|.++++ ++++|||++||
T Consensus 88 ~G~~~~~-~~ae~~g~~~g~~~Gr~gs~H~~~~~~~~~~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GD 166 (341)
T CHL00149 88 KGVPPKN-VMAELFGKETGCSRGRGGSMHIFSAPHNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGD 166 (341)
T ss_pred cCCCHHH-HHHHHcCCCCCCCCCCCCCccccchhcCccCCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCC
Confidence 9975432 2333 4545565543 23433 2344 5999999999999999999887 58999999999
Q ss_pred CCcccchHHHHHHHhhhcCCCEEEEEECCCCC-cCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcch
Q 004968 224 GTTMAGQAYEAMSNAGYLDSNMIVILNDSRHS-LHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGM 302 (721)
Q Consensus 224 Gal~~G~~~Ealn~A~~~~~plivIv~dN~~~-s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~ 302 (721)
|++++|++||+||+|+.|++|+|+||.||++. |.++..+.
T Consensus 167 Ga~~~G~~~Ealn~A~~~~LPvifvv~NN~~~i~~~~~~~~--------------------------------------- 207 (341)
T CHL00149 167 GTTNNGQFFECLNMAVLWKLPIIFVVENNQWAIGMAHHRST--------------------------------------- 207 (341)
T ss_pred chhhhcHHHHHHHHHhhcCCCEEEEEEeCCeeeecchhhee---------------------------------------
Confidence 99999999999999999999999999999972 22110000
Q ss_pred HHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHH----HHHHHHhcCCCCCEEEEEEEeccCCCcccc
Q 004968 303 HEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLIS----VLQEVASLGSMGPVLVHVVTEENRRAEDTQ 376 (721)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~----al~~a~~~~~~~P~lI~v~T~kg~G~~~ae 376 (721)
..++...+++++|+..+ .|||+|..++.+ +++++++ .++|++|++.|.+..|+..++
T Consensus 208 --------------~~~d~a~~a~a~G~~~~-~Vdg~d~~av~~a~~~A~~~ar~--~~gP~lIev~tyR~~gHs~~D 268 (341)
T CHL00149 208 --------------SIPEIHKKAEAFGLPGI-EVDGMDVLAVREVAKEAVERARQ--GDGPTLIEALTYRFRGHSLAD 268 (341)
T ss_pred --------------CCccHHHHHHhCCCCEE-EEeCCCHHHHHHHHHHHHHHHHh--CCCCEEEEEEEecCCCcCCCC
Confidence 00112346788999998 789999886664 4555555 578999999999999987653
|
|
| >PLN02269 Pyruvate dehydrogenase E1 component subunit alpha | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.1e-24 Score=229.76 Aligned_cols=225 Identities=15% Similarity=0.139 Sum_probs=157.3
Q ss_pred CCCHHHHHHHHHHH---HHH-----HHHhHhcCCCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHHhCchh
Q 004968 93 SLTIKELKQLAVEI---RSE-----LSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRS 164 (721)
Q Consensus 93 ~~~~~~l~~la~ei---R~~-----~~~~~~~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~~ 164 (721)
.++.++|.++.+.+ |.+ .++..++..|+++++.|+-.+.+++-..+ .|+|+++. .|+.++|.+..|...
T Consensus 26 ~~~~~~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~~~~~GqEA~~vg~~~aL-~~~D~~~~--~yR~hg~~la~G~~~ 102 (362)
T PLN02269 26 ETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAI-TKEDAIIT--AYRDHCTHLGRGGTV 102 (362)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhc-CCCCEEEe--chhhHHHHHHcCCCH
Confidence 55666666654333 322 22222345689999999943433333333 58999999 999999999999844
Q ss_pred hhHHHHh-hCCCCCCCCC-CCCCC------CCcC-cCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHH
Q 004968 165 LIHTLRK-KDGISGYTSR-SESEY------DPFN-AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAM 235 (721)
Q Consensus 165 ~~~~~r~-~ggl~G~~~~-~es~~------d~~~-~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Eal 235 (721)
.- .+.+ +|...|+.++ ..|.| .+++ +|++|+++|.|+|+|+|.+++++++.+||++|||++++|.+||+|
T Consensus 103 ~~-~~ae~~g~~~g~~~GrggsmH~~~~~~~~~~~~~~vG~~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Eal 181 (362)
T PLN02269 103 LE-VFAELMGRKDGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEAL 181 (362)
T ss_pred HH-HHHHHcCCCCCCCCCCCCcccccchhcCccccCchhhccccHHHHHHHHHHHhCCCCeEEEEECCCCcccCHHHHHH
Confidence 32 2344 4446665553 23444 2333 699999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhc
Q 004968 236 SNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARG 315 (721)
Q Consensus 236 n~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~ 315 (721)
|+|+.|++|+|+||+||++. ++| +.. +.... ..+.
T Consensus 182 n~A~~~~lPvvfvveNN~~a-ist-------~~~-------~~~~~----------------------------~~~~-- 216 (362)
T PLN02269 182 NIAALWDLPVIFVCENNHYG-MGT-------AEW-------RAAKS----------------------------PAYY-- 216 (362)
T ss_pred HHhhccCcCEEEEEeCCCEe-ccC-------chh-------hhccc----------------------------hHHH--
Confidence 99999999999999999983 222 111 00000 0000
Q ss_pred ccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhc-CCCCCEEEEEEEeccCCCcccc
Q 004968 316 MIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL-GSMGPVLVHVVTEENRRAEDTQ 376 (721)
Q Consensus 316 ~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~-~~~~P~lI~v~T~kg~G~~~ae 376 (721)
. ++.++..+ .|||+|+.++.++++++.+. ..++|++|++.|.+-.|+...+
T Consensus 217 -------~--~~~~~p~~-~VDG~D~~av~~a~~~A~~~aR~~gP~lIe~~tyR~~gHs~~D 268 (362)
T PLN02269 217 -------K--RGDYVPGL-KVDGMDVLAVKQACKFAKEHALSNGPIVLEMDTYRYHGHSMSD 268 (362)
T ss_pred -------H--hhcCCCeE-EECCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCcCCCcCCCC
Confidence 0 11234444 68999999999999876542 1278999999999998886543
|
|
| >cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC) | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.7e-23 Score=218.56 Aligned_cols=213 Identities=18% Similarity=0.145 Sum_probs=160.1
Q ss_pred HHHHHHHHhHhcCCCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHHhCchhhhHHHHhh-CCCCCCCCCC-
Q 004968 105 EIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKK-DGISGYTSRS- 182 (721)
Q Consensus 105 eiR~~~~~~~~~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~~~~~~~r~~-ggl~G~~~~~- 182 (721)
|.|..-+...++..|+.+++.|+-.+.+++...++ |+|+++. .||+++|.+.+|.... ..+.++ |...|+.++.
T Consensus 12 e~~~~~~~~~g~~~~~~~~~~GqEa~~vg~~~~l~-~~D~~~~--~yR~~~~~la~G~~~~-~~~~e~~g~~~g~~~G~~ 87 (293)
T cd02000 12 DERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALR-PGDWVFP--TYRDHGHALARGVDLK-EMLAELFGKETGPCKGRG 87 (293)
T ss_pred HHHHHHHHHCCccccccCCCCChHHHHHHHHHHCC-CCCEEEe--cchhHHHHHHcCCCHH-HHHHHHcCCCCCCCCCCC
Confidence 34444444555677889999999766677766666 7899988 9999999999998443 224444 4455554432
Q ss_pred CCCC-------CCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCC
Q 004968 183 ESEY-------DPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHS 255 (721)
Q Consensus 183 es~~-------d~~~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~ 255 (721)
.|.| ...++|++|+++|+|+|+|+|.++.+++++|||++|||++++|.++|+||+|+.+++|+++||+||++.
T Consensus 88 g~~h~~~~~~~~~~~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv~NN~~~ 167 (293)
T cd02000 88 GSMHIGDKEKNFFGGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGYA 167 (293)
T ss_pred CCCCCCchhcCccccccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEEEeeCCee
Confidence 2322 234579999999999999999999999999999999999999999999999999999999999999872
Q ss_pred cCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEec
Q 004968 256 LHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGP 335 (721)
Q Consensus 256 s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~ 335 (721)
+.+ +.. +.. -.++...+++++|+.++ .
T Consensus 168 -i~~-------~~~-------~~~-------------------------------------~~~~~~~~a~a~G~~~~-~ 194 (293)
T cd02000 168 -IST-------PTS-------RQT-------------------------------------AGTSIADRAAAYGIPGI-R 194 (293)
T ss_pred -ccC-------CHH-------HHh-------------------------------------CCccHHHHHHhCCCCEE-E
Confidence 211 100 000 00122456788999997 7
Q ss_pred cCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEEeccCCCcc
Q 004968 336 VDGHNIEDLISVLQEVASL--GSMGPVLVHVVTEENRRAED 374 (721)
Q Consensus 336 vdGhd~~~l~~al~~a~~~--~~~~P~lI~v~T~kg~G~~~ 374 (721)
|||+|++++.++++++.+. ..++|++|++.|.+..|+..
T Consensus 195 Vdg~d~~~v~~a~~~A~~~ar~~~~P~lIev~~~r~~gHs~ 235 (293)
T cd02000 195 VDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGHST 235 (293)
T ss_pred ECCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEeccCCCCC
Confidence 8999999988888776531 14789999999999999874
|
PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine). |
| >PLN02374 pyruvate dehydrogenase (acetyl-transferring) | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-22 Score=224.67 Aligned_cols=224 Identities=13% Similarity=0.144 Sum_probs=159.5
Q ss_pred CCCHHHHHHHHHHH---HHH---HH--HhHhcCCCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHHhCchh
Q 004968 93 SLTIKELKQLAVEI---RSE---LS--SIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRS 164 (721)
Q Consensus 93 ~~~~~~l~~la~ei---R~~---~~--~~~~~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~~ 164 (721)
+++.++|.++-+.+ |.+ +. +..++..|+++++.|+-.+.+++-..+ .|+|+++. .|+.++|.+..|...
T Consensus 82 ~ls~e~ll~lyr~M~~~R~fEe~~~~l~~~Gki~g~~h~~~GqEA~~vg~~~aL-~~~D~v~~--~yR~h~~~La~G~~~ 158 (433)
T PLN02374 82 LVTREEGLELYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLL-KKDDSVVS--TYRDHVHALSKGVPA 158 (433)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeccCCCCCcHHHHHHHHHHc-CCCCEEEc--cCcChHHhhhcCCCH
Confidence 66677776664433 322 11 222345688999999844444444444 47899988 999999999888743
Q ss_pred hhHHHHh-hCCCCCCCCC-CCCCC------CCcC-cCCCcchHHHHHHHHHHHHHcC-------CCCeEEEEEcCCCccc
Q 004968 165 LIHTLRK-KDGISGYTSR-SESEY------DPFN-AGHGCNSVSAGLGMAVARDIKG-------KRECIVTVISNGTTMA 228 (721)
Q Consensus 165 ~~~~~r~-~ggl~G~~~~-~es~~------d~~~-~G~~G~~is~A~G~AlA~~l~g-------~~~~VvaviGDGal~~ 228 (721)
+ ..+.+ +|...|+..+ ..|.| ..++ .|++|+++|+|+|+|+|.++++ ++++|||++|||++++
T Consensus 159 ~-~~mael~Gk~~g~~~GrggsmH~~~~~~~~~g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~e 237 (433)
T PLN02374 159 R-AVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNN 237 (433)
T ss_pred H-HHHHHHcCCCCCCCCCCCCcCccCchhhCCCCCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCcccc
Confidence 3 23344 3445554443 23433 2333 5899999999999999999886 4899999999999999
Q ss_pred chHHHHHHHhhhcCCCEEEEEECCCCC-cCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHH
Q 004968 229 GQAYEAMSNAGYLDSNMIVILNDSRHS-LHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAA 307 (721)
Q Consensus 229 G~~~Ealn~A~~~~~plivIv~dN~~~-s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~ 307 (721)
|++||+||+|+.|++|+|+||+||+|. |.++..+..
T Consensus 238 G~f~EaLn~A~~~~LPvIfVV~NN~yaig~~~~~~t~------------------------------------------- 274 (433)
T PLN02374 238 GQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATS------------------------------------------- 274 (433)
T ss_pred ChHHHHHHHHHHhCCCEEEEEeCCCEeecceeeeccC-------------------------------------------
Confidence 999999999999999999999999973 222110000
Q ss_pred HHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHH----HHHHHHhcCCCCCEEEEEEEeccCCCcccc
Q 004968 308 KVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLIS----VLQEVASLGSMGPVLVHVVTEENRRAEDTQ 376 (721)
Q Consensus 308 ~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~----al~~a~~~~~~~P~lI~v~T~kg~G~~~ae 376 (721)
.++...+++++|+..+ .|||+|+.++.+ +++.+++ .++|+||++.|.+.+|+...+
T Consensus 275 ----------~~dia~~A~a~G~~~~-~VDG~D~~av~~a~~~A~~~Ar~--g~gP~LIe~~tyR~~GHs~~D 334 (433)
T PLN02374 275 ----------DPEIWKKGPAFGMPGV-HVDGMDVLKVREVAKEAIERARR--GEGPTLVECETYRFRGHSLAD 334 (433)
T ss_pred ----------CCCHHHHHHhcCCcEE-EECCCCHHHHHHHHHHHHHHHHH--cCCCEEEEEEEEecCCcCCCC
Confidence 0111335678999998 789999987775 4555565 578999999999999987654
|
|
| >TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-22 Score=218.64 Aligned_cols=206 Identities=17% Similarity=0.212 Sum_probs=152.4
Q ss_pred hHhcCCCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHHhCchhhhHHHHh-hCCCCCCCCC-CCCCC----
Q 004968 113 IVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRK-KDGISGYTSR-SESEY---- 186 (721)
Q Consensus 113 ~~~~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~~~~~~~r~-~ggl~G~~~~-~es~~---- 186 (721)
..++..|+++++.|+-.+.+++-..+ .|+|+++. .||.++|.+..|.... ..+.+ +|...|++.+ ..|.|
T Consensus 26 ~~g~~~~~~~~~~GqEa~~vg~~~al-~~~D~~~~--~yR~~~~~la~G~~~~-~~~~~~~g~~~g~~~Gr~g~~h~~~~ 101 (315)
T TIGR03182 26 GMGKIGGFCHLYIGQEAVAVGLIAAL-KPDDYVIT--SYRDHGHALARGVPPK-EVMAELTGRATGCSKGKGGSMHMFDR 101 (315)
T ss_pred hCCccccccCCCCChHHHHHHHHHhC-CCCCEEEe--chhhHHHHHHcCCCHH-HHHHHHcCCCCCCCCCCCCCCCcCch
Confidence 33456689999999944433333333 57899999 9999999999997443 23344 3445565443 23333
Q ss_pred --CCc-CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCC
Q 004968 187 --DPF-NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEES 263 (721)
Q Consensus 187 --d~~-~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~ 263 (721)
..+ +.|++|+++|+|+|+|+|.++++++++|||++|||++++|.+||+||+|+.+++|+++||.||++. +.+
T Consensus 102 ~~~~~~~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~vv~NN~yg-~s~---- 176 (315)
T TIGR03182 102 EKNFYGGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNLYA-MGT---- 176 (315)
T ss_pred hhCcccCcCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccCcCEEEEEEcCCcc-ccC----
Confidence 233 359999999999999999999999999999999999999999999999999999999999999862 211
Q ss_pred CCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHH
Q 004968 264 PKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIED 343 (721)
Q Consensus 264 ~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~ 343 (721)
+.. +... .++...+++++|+.++ .|||+|+.+
T Consensus 177 ---~~~-------~~~~-------------------------------------~~~~a~~A~a~G~~~~-~Vdg~d~~a 208 (315)
T TIGR03182 177 ---SVE-------RSSS-------------------------------------VTDLYKRGESFGIPGE-RVDGMDVLA 208 (315)
T ss_pred ---CHH-------HHhC-------------------------------------CcCHHHHHHhCCCCEE-EECCCCHHH
Confidence 110 0000 0122456788999998 789999998
Q ss_pred HHHHHHHHHhc--CCCCCEEEEEEEeccCCCccc
Q 004968 344 LISVLQEVASL--GSMGPVLVHVVTEENRRAEDT 375 (721)
Q Consensus 344 l~~al~~a~~~--~~~~P~lI~v~T~kg~G~~~a 375 (721)
+.++++++.+. ..++|++|++.|.+-.|+...
T Consensus 209 v~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~ 242 (315)
T TIGR03182 209 VREAAKEAVERARSGKGPILLEMKTYRFRGHSMS 242 (315)
T ss_pred HHHHHHHHHHHHHccCCCEEEEEeCCcCCCCCCC
Confidence 88777765431 257899999999999888654
|
Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. |
| >TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.3e-22 Score=214.82 Aligned_cols=224 Identities=17% Similarity=0.166 Sum_probs=156.4
Q ss_pred cCCCCHHHHHHHHHHH---HHH-----HHHhHhcCCCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHHhCc
Q 004968 91 LKSLTIKELKQLAVEI---RSE-----LSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGR 162 (721)
Q Consensus 91 ~~~~~~~~l~~la~ei---R~~-----~~~~~~~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr 162 (721)
..+++.++|.++-+.+ |.+ .+...++. |.++++.|+-.+.+++-..+ .|+|+++. .||+++|.+..|.
T Consensus 18 ~~~~~~~~l~~~y~~m~~~R~~e~~~~~~~~~g~i-~~~~~~~GqEa~~vg~~~al-~~~D~~~~--~yR~h~~~l~~G~ 93 (341)
T TIGR03181 18 APDLSDEELVELYRDMVLTRRFDTKALALQRQGRL-GTYAPNLGQEAAQVGSALAL-RKDDWVFP--SYRDHAAMLARGV 93 (341)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCce-ecccCCCChHHHHHHHHHHc-CCCCEEEc--chhhHHHHHHcCC
Confidence 3456666666554332 322 22222244 67789999944444443444 47899998 9999999999998
Q ss_pred hhhhHHHHhh-CCCCCCCCCCCCCCCCcC-cCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhh
Q 004968 163 RSLIHTLRKK-DGISGYTSRSESEYDPFN-AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGY 240 (721)
Q Consensus 163 ~~~~~~~r~~-ggl~G~~~~~es~~d~~~-~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~ 240 (721)
...- .+.++ |...|... .....++| +|++|+++|+|+|+|+|.++.+++++|||++|||+++.|.++|+||+|+.
T Consensus 94 ~~~~-~~ae~~g~~~g~~~--~~~~~~~g~~~~vG~~lp~AiGaAla~k~~~~~~~vv~~~GDGa~~~g~~~EaL~tA~~ 170 (341)
T TIGR03181 94 PLVE-ILLYWRGDERGSWD--PEGVNILPPNIPIGTQYLHAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGV 170 (341)
T ss_pred CHHH-HHHHhcCcCcCCCC--chhcCccCCCchHhcchhHHHhHHHHHHhhCCCCEEEEEecCCccccChHHHHHHHHhc
Confidence 4332 22333 33333211 12234455 58899999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCC
Q 004968 241 LDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQ 320 (721)
Q Consensus 241 ~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 320 (721)
+++|+++||.||++. +.+ +.. +. ...++
T Consensus 171 ~~LPvi~Vv~NN~~~-~~~-------~~~-------~~-------------------------------------~~~~d 198 (341)
T TIGR03181 171 FKAPVVFFVQNNQWA-ISV-------PRS-------KQ-------------------------------------TAAPT 198 (341)
T ss_pred cCCCEEEEEECCCCc-ccc-------chh-------hh-------------------------------------hCCcC
Confidence 999999999999973 111 000 00 00112
Q ss_pred ccceeeeeCceEEeccCCCCHHHHHHHHH----HHHhcCCCCCEEEEEEEeccCCCcccc
Q 004968 321 GSTLFEELGLYYIGPVDGHNIEDLISVLQ----EVASLGSMGPVLVHVVTEENRRAEDTQ 376 (721)
Q Consensus 321 ~~~l~ea~G~~~~g~vdGhd~~~l~~al~----~a~~~~~~~P~lI~v~T~kg~G~~~ae 376 (721)
...++++||+.++ .|||+|..++.++++ ++++ .++|++|++.|.+-.|+...+
T Consensus 199 ~~~~a~a~G~~~~-~Vdg~d~~av~~a~~~A~~~a~~--~~gP~lIev~t~R~~gH~~~D 255 (341)
T TIGR03181 199 LAQKAIAYGIPGV-QVDGNDVLAVYAVTKEAVERARS--GGGPTLIEAVTYRLGPHTTAD 255 (341)
T ss_pred HHHHHhhCCCCEE-EECCCCHHHHHHHHHHHHHHHHc--CCCCEEEEEEeecCCCCCCCC
Confidence 2456788999998 789999876655554 4554 578999999999988876654
|
Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. |
| >PRK07119 2-ketoisovalerate ferredoxin reductase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=5e-21 Score=208.39 Aligned_cols=273 Identities=17% Similarity=0.099 Sum_probs=197.8
Q ss_pred HcCCCeEEEecCCCCccC---hHHHHHhCCCcEeeccccHHHHHHHHHHHHhCCCeeEEEecHhhHHHHHHHHHHHhhcC
Q 004968 416 EKDKDIVVVHAGMEMDLS---LQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQ 492 (721)
Q Consensus 416 ~~d~~iv~i~ad~~~~~~---l~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~tys~Fl~ra~dqi~~~~a~~ 492 (721)
+.+.+++..-+-.+.+.- +..+.+++...|+. .-+|.+++++|.|+|++|.|.+++|++.++..+++++ ..++..
T Consensus 19 ~ag~~~~a~YPiTPsTeI~e~la~~~~~~~~~~vq-~E~E~aA~~~a~GAs~aG~Ra~taTSg~Gl~lm~E~l-~~a~~~ 96 (352)
T PRK07119 19 RAGCRCYFGYPITPQSEIPEYMSRRLPEVGGVFVQ-AESEVAAINMVYGAAATGKRVMTSSSSPGISLKQEGI-SYLAGA 96 (352)
T ss_pred HhCCCEEEEeCCCCchHHHHHHHHHHHHhCCEEEe-eCcHHHHHHHHHHHHhhCCCEEeecCcchHHHHHHHH-HHHHHc
Confidence 346677665554443332 33444556677888 8999999999999999999999999999999999987 688999
Q ss_pred CcceEEEEcCCCCcCCCCCCcCcHHHHHHHcc-----CCCcEEEeeCCHHHHHHHHHHHHHhCC---CCEEEEecCCCc-
Q 004968 493 RLPVRFVITSAGLVGSDGPTQCGAFDITFMSC-----LPNMIVMAPSDEDELVDMVATVASIDD---RPVCFRYPRGAI- 563 (721)
Q Consensus 493 ~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~-----iPnl~V~~Psd~~E~~~~l~~a~~~~~---~P~~ir~~r~~~- 563 (721)
++|++++...++..+ .|.|+..+.|+.+.+. .-++.|++|+|++|++++...|++.++ -|++++.+....
T Consensus 97 e~P~v~v~v~R~~p~-~g~t~~eq~D~~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~lsh 175 (352)
T PRK07119 97 ELPCVIVNIMRGGPG-LGNIQPSQGDYFQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGVLGQ 175 (352)
T ss_pred cCCEEEEEeccCCCC-CCCCcchhHHHHHHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchhhhC
Confidence 999888874444323 3468888889766532 224899999999999999999998654 599998754211
Q ss_pred --ccccCCCC-----CCcce-ecCc----------------------------e----------EEE-EeCCcEEEEEec
Q 004968 564 --VRTDLPGY-----RGIPI-EIGK----------------------------G----------KVL-VEGKDVALLGYG 596 (721)
Q Consensus 564 --~~~~~p~~-----~~~~~-~~gk----------------------------~----------~vl-~eG~dv~Iva~G 596 (721)
...++|+. ...+. ..+. . +.. .+++|++||+||
T Consensus 176 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~e~~~~~dad~~iva~G 255 (352)
T PRK07119 176 MMEPVEFPPRKKRPLPPKDWAVTGTKGRRKNIITSLFLDPEELEKHNLRLQEKYAKIEENEVRYEEYNTEDAELVLVAYG 255 (352)
T ss_pred ceeeecCCchhhcccCCCCCccCCCCCCceeccCCcccCHHHHHHHHHHHHHHHHHHHhhCCcceeecCCCCCEEEEEcC
Confidence 00111100 00000 0000 0 111 136899999999
Q ss_pred hhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEE
Q 004968 597 AMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPI 676 (721)
Q Consensus 597 s~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~ 676 (721)
+++..+++|++.|+++|++++|++++++||||.+.|++++++++.|+|+|++ .|.+..+|...+.. ..++..+
T Consensus 256 s~~~~a~eA~~~L~~~Gi~v~vi~~~~l~Pfp~~~i~~~l~~~k~VivvE~n-~g~l~~ei~~~~~~------~~~~~~i 328 (352)
T PRK07119 256 TSARIAKSAVDMAREEGIKVGLFRPITLWPFPEKALEELADKGKGFLSVEMS-MGQMVEDVRLAVNG------KKPVEFY 328 (352)
T ss_pred ccHHHHHHHHHHHHHcCCeEEEEeeceecCCCHHHHHHHHhCCCEEEEEeCC-ccHHHHHHHHHhCC------CCceeEE
Confidence 9999999999999999999999999999999999999999999999999998 47788887754421 1122233
Q ss_pred ecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhh
Q 004968 677 VLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 711 (721)
Q Consensus 677 g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 711 (721)
+..+ | .-++++.|.+.++++++
T Consensus 329 ~k~~-----G--------~~~~~~~i~~~~~~~~~ 350 (352)
T PRK07119 329 GRMG-----G--------MVPTPEEILEKIKEILG 350 (352)
T ss_pred eccC-----C--------EeCCHHHHHHHHHHHhc
Confidence 3211 1 12688999999998874
|
|
| >PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2 | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.1e-24 Score=197.17 Aligned_cols=123 Identities=34% Similarity=0.569 Sum_probs=115.0
Q ss_pred CceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEcCCC-CCChHHHH
Q 004968 579 GKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHV 657 (721)
Q Consensus 579 gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~~-~gG~gs~v 657 (721)
||+.++++|+|++||+||++++.|++|++.|+++||+++|||++|++|||++.|.++++++++++|+||+. .||||+.|
T Consensus 1 Gk~~~~~~g~di~iia~G~~~~~al~A~~~L~~~Gi~~~vi~~~~i~P~d~~~l~~~~~~~~~vvvvee~~~~gg~g~~i 80 (124)
T PF02780_consen 1 GKAEVLREGADITIIAYGSMVEEALEAAEELEEEGIKAGVIDLRTIKPFDEEALLESLKKTGRVVVVEEHYKIGGLGSAI 80 (124)
T ss_dssp TEEEEEESSSSEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEEEESSBHHHHHHHSHHHHHHHHSETCESEEEEHSSH
T ss_pred CEEEEEeCCCCEEEEeehHHHHHHHHHHHHHHHcCCceeEEeeEEEecccccchHHHHHHhccccccccccccccHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999888989999999997 79999999
Q ss_pred HHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHH
Q 004968 658 SHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHI 702 (721)
Q Consensus 658 ~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I 702 (721)
++++.++++.....++.++|.||.|+++| ..++++++|||+++|
T Consensus 81 ~~~l~~~~~~~~~~~~~~~g~~d~~~~~~-~~~~~~~~gl~~e~I 124 (124)
T PF02780_consen 81 AEYLAENGFNDLDAPVKRLGVPDEFIPHG-RAELLEAFGLDAESI 124 (124)
T ss_dssp HHHHHHHTTTGEEEEEEEEEE-SSSHHSS-HHHHHHHTTHSHHHH
T ss_pred HHHHHHhCCccCCCCeEEEEECCCcccCc-HHHHHHHCcCCCCcC
Confidence 99999988743347899999999999999 999999999999987
|
2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B .... |
| >PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-21 Score=208.77 Aligned_cols=205 Identities=18% Similarity=0.221 Sum_probs=145.4
Q ss_pred hcCCCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHHhCchhhhHHHHhh-CCCCCCCCCCC------CCCC
Q 004968 115 SKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKK-DGISGYTSRSE------SEYD 187 (721)
Q Consensus 115 ~~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~~~~~~~r~~-ggl~G~~~~~e------s~~d 187 (721)
++..|..+++.|+-.+.+++...++ |.|+++. .|++.++.+..|.... ..+.++ |...|...... ....
T Consensus 20 ~~~~g~~~~~~GqEa~~v~~~~~l~-~~D~v~~--~yR~~~~~la~g~~~~-~~~~e~~g~~~g~~g~~~~~~~~~~~~~ 95 (300)
T PF00676_consen 20 QGRFGFYHLSAGQEAIQVAAAAALR-PGDWVFP--YYRDHGHALARGIDLE-EIFAELLGKAKGHGGGRHPLHFSDKGLN 95 (300)
T ss_dssp TTSSSCTT-TTTCHHHHHHHHHHSC-TTSEEEE--CSTTHHHHHHTTT-HH-HHHHHHHTBTTSTTTTGCTTEEEBTTTT
T ss_pred CCCeEEecchHHHHHHHHHHHHhcc-CCCEEEe--cccchhhhhhcccccc-chhHHhcCcccCCCCCccccccccccce
Confidence 3556888999999666666655555 7899998 7999999998887422 222332 22222111111 1112
Q ss_pred Cc-CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCc
Q 004968 188 PF-NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKT 266 (721)
Q Consensus 188 ~~-~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~ 266 (721)
.+ +++++|.++|+|+|+|+|.|+++++..++|++|||+.++|.+||+||+|+.|++|+||||+||++. ++|
T Consensus 96 ~~~~~~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveNN~~a-ist------- 167 (300)
T PF00676_consen 96 ILGASSPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVENNQYA-IST------- 167 (300)
T ss_dssp BEEEESSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEEESEE-TTE-------
T ss_pred eeeccccccccCccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEecCCcc-ccc-------
Confidence 33 479999999999999999999999999999999999999999999999999999999999999982 222
Q ss_pred chhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHH
Q 004968 267 SINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLIS 346 (721)
Q Consensus 267 ~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~ 346 (721)
+.. +.. .......+++++|+..+ .|||+|+.++.+
T Consensus 168 ~~~-------~~~-------------------------------------~~~~~~~~a~~~gip~~-~VDG~D~~av~~ 202 (300)
T PF00676_consen 168 PTE-------EQT-------------------------------------ASPDIADRAKGYGIPGI-RVDGNDVEAVYE 202 (300)
T ss_dssp EHH-------HHC-------------------------------------SSSTSGGGGGGTTSEEE-EEETTSHHHHHH
T ss_pred Ccc-------ccc-------------------------------------cccchhhhhhccCCcEE-EECCEeHHHHHH
Confidence 111 000 01112456788999998 899999999888
Q ss_pred HHHHHHhc--CCCCCEEEEEEEeccCCCcccc
Q 004968 347 VLQEVASL--GSMGPVLVHVVTEENRRAEDTQ 376 (721)
Q Consensus 347 al~~a~~~--~~~~P~lI~v~T~kg~G~~~ae 376 (721)
++++|.+. ..++|+||++.|.+-.|+..++
T Consensus 203 a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~D 234 (300)
T PF00676_consen 203 AAKEAVEYARAGKGPVLIEAVTYRLRGHSESD 234 (300)
T ss_dssp HHHHHHHHHHTTT--EEEEEEE--SS-SSTTS
T ss_pred HHHHHHHHHhcCCCCEEEEEeeccCCCCCCCC
Confidence 77765432 2589999999999999987665
|
Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A .... |
| >TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=218.65 Aligned_cols=280 Identities=18% Similarity=0.224 Sum_probs=203.9
Q ss_pred HHHHHHHHHHHHcCCCeEEEecCCCCccChHHHHHhCC--CcEeeccccHHHHHHHHHHHHhCCCeeEEEecHhhHHHHH
Q 004968 405 DCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFP--ERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAY 482 (721)
Q Consensus 405 ~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~fp--~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~tys~Fl~ra~ 482 (721)
+|++.++.. .+.+++..-+-.+.+.-++.+.+..+ +-++.....|..++.+|.|+|++|.|.+++|.+..+.++.
T Consensus 9 eA~A~g~~~---ag~~~~~~YPiTP~t~i~e~l~~~~~~~~~~~~~~~~E~~a~~~~~GAs~aG~ra~t~ts~~Gl~~~~ 85 (595)
T TIGR03336 9 EAIARGALE---AGVGVAAAYPGTPSSEITDTLAKVAKRAGVYFEWSVNEKVAVEVAAGAAWSGLRAFCTMKHVGLNVAA 85 (595)
T ss_pred HHHHHHHHH---cCCEEEEecCCCCHHHHHHHHHHhhhhccEEEEECcCHHHHHHHHHHHHhcCcceEEEccCCchhhhH
Confidence 455544432 34555554443333222344554433 4677888899999999999999999999999999999999
Q ss_pred HHHHHHhh--cCCcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhC---CCCEEEE
Q 004968 483 DQVVNDVD--QQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASID---DRPVCFR 557 (721)
Q Consensus 483 dqi~~~~a--~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~---~~P~~ir 557 (721)
|++.. ++ ..++|++++...+. | .++|+..+.|..+.+. -++.|++|+|++|++++...|++.+ .-|++++
T Consensus 86 e~l~~-~~~~g~~~~iV~~~~~~~--g-p~~~~~~q~d~~~~~~-~~~~vl~p~~~qE~~d~~~~Af~lae~~~~PV~v~ 160 (595)
T TIGR03336 86 DPLMT-LAYTGVKGGLVVVVADDP--S-MHSSQNEQDTRHYAKF-AKIPCLEPSTPQEAKDMVKYAFELSEKFGLPVILR 160 (595)
T ss_pred HHhhh-hhhhcCcCceEEEEccCC--C-CccchhhHhHHHHHHh-cCCeEECCCCHHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 99865 45 34777777764331 2 3588888888766654 5888999999999999999999864 4599998
Q ss_pred ecCCCc---ccccCCCC---C---Ccceec----------------------------Cc--e-EEEEeCCcEEEEEech
Q 004968 558 YPRGAI---VRTDLPGY---R---GIPIEI----------------------------GK--G-KVLVEGKDVALLGYGA 597 (721)
Q Consensus 558 ~~r~~~---~~~~~p~~---~---~~~~~~----------------------------gk--~-~vl~eG~dv~Iva~Gs 597 (721)
++.... ...++++. . +...+. .. . .+..+++|++||+||+
T Consensus 161 ~d~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~iv~~G~ 240 (595)
T TIGR03336 161 PTTRISHMRGDVELGEIPKEEVVKGFEKDPERYVMVPAIARVRHKKLLSKQHKLREELNESPLNRLEINGAKIGVIASGI 240 (595)
T ss_pred EeeeeccceeeEecCCCcccccccCCCCChhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCceeccCCCCEEEEEcCH
Confidence 753211 00111100 0 000000 00 0 1122468999999999
Q ss_pred hhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEe
Q 004968 598 MVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIV 677 (721)
Q Consensus 598 ~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g 677 (721)
+++.+++|++.| |++++|++++++||||++.|++++++++.||||||+. +++++.+..++...+ .+++++|
T Consensus 241 ~~~~a~ea~~~~---Gi~~~v~~~~~i~Pld~~~i~~~~~~~~~vivvEe~~-~~~~~~~~~~~~~~~-----~~v~~~G 311 (595)
T TIGR03336 241 AYNYVKEALERL---GVDVSVLKIGFTYPVPEGLVEEFLSGVEEVLVVEELE-PVVEEQVKALAGTAG-----LNIKVHG 311 (595)
T ss_pred HHHHHHHHHHHc---CCCeEEEEeCCCCCCCHHHHHHHHhcCCeEEEEeCCc-cHHHHHHHHHHHhcC-----CCeEEec
Confidence 999999988765 9999999999999999999999999999999999998 566666665555433 3688999
Q ss_pred cCCccccCCCHHHHHHHcCCCHHHHHHHHHHH
Q 004968 678 LPDNYIEHASPTQQLALAGLTGHHIAATALSL 709 (721)
Q Consensus 678 ~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~ 709 (721)
+||.|++ +..+||++.|.++++++
T Consensus 312 ~~d~fi~--------~~~~Ld~~~i~~~i~~~ 335 (595)
T TIGR03336 312 KEDGFLP--------REGELNPDIVVNALAKF 335 (595)
T ss_pred ccCCccC--------cccCcCHHHHHHHHHHh
Confidence 9999998 45789999999999886
|
Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase. |
| >PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-19 Score=197.12 Aligned_cols=269 Identities=15% Similarity=0.168 Sum_probs=188.0
Q ss_pred CCCeEEEecCCCCccChHHHHH---hCCCcEeeccccHHHHHHHHHHHHhCCCeeEEEecHhhHHHHHHHHHHHhhcCCc
Q 004968 418 DKDIVVVHAGMEMDLSLQLFQE---KFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRL 494 (721)
Q Consensus 418 d~~iv~i~ad~~~~~~l~~f~~---~fp~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~tys~Fl~ra~dqi~~~~a~~~l 494 (721)
..+++..-+=.+.+.-+..+.+ +....|+.+- +|.+++++|.|+|++|.|.+++|++..+..+.+++ ..++..++
T Consensus 21 g~~~~a~YPITPsTei~e~la~~~~~~~~~~vq~E-~E~aA~~~a~GAs~aG~Ra~TaTSg~Gl~lm~E~~-~~a~~~e~ 98 (376)
T PRK08659 21 GCRFFAGYPITPSTEIAEVMARELPKVGGVFIQME-DEIASMAAVIGASWAGAKAMTATSGPGFSLMQENI-GYAAMTET 98 (376)
T ss_pred CCCEEEEcCCCChHHHHHHHHHhhhhhCCEEEEeC-chHHHHHHHHhHHhhCCCeEeecCCCcHHHHHHHH-HHHHHcCC
Confidence 5566655444443322334433 3445788887 99999999999999999999999999999999987 56677899
Q ss_pred ceEEEE-cCCCCcCCCCCCcCcHHHHHHHcc----CCCcEEEeeCCHHHHHHHHHHHHHhCC---CCEEEEecCCCc---
Q 004968 495 PVRFVI-TSAGLVGSDGPTQCGAFDITFMSC----LPNMIVMAPSDEDELVDMVATVASIDD---RPVCFRYPRGAI--- 563 (721)
Q Consensus 495 pVv~v~-~~~G~~G~dG~TH~~~~dia~~~~----iPnl~V~~Psd~~E~~~~l~~a~~~~~---~P~~ir~~r~~~--- 563 (721)
|+|++. +|+|. +..-||++.+.|+...+. --++.|++|+|++|++++...|++.++ -|++++.+....
T Consensus 99 P~Viv~~~R~gp-~tg~p~~~~q~D~~~~~~~~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~ 177 (376)
T PRK08659 99 PCVIVNVQRGGP-STGQPTKPAQGDMMQARWGTHGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEVVGHMR 177 (376)
T ss_pred CEEEEEeecCCC-CCCCCCCcCcHHHHHHhcccCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechHhhCCc
Confidence 988877 55554 233478888778655441 123679999999999999999998644 599987753210
Q ss_pred ccccCCC------------------CCCcc-----ee----cC--c----------------------------------
Q 004968 564 VRTDLPG------------------YRGIP-----IE----IG--K---------------------------------- 580 (721)
Q Consensus 564 ~~~~~p~------------------~~~~~-----~~----~g--k---------------------------------- 580 (721)
...++|+ ...+. ++ .+ .
T Consensus 178 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 257 (376)
T PRK08659 178 EKVVLPEPDEIEIIERKLPKVPPEAYKPFDDPEGGVPPMPAFGDGYRFHVTGLTHDERGFPTTDPETHEKLVRRLVRKIE 257 (376)
T ss_pred ccccCCChhhccccccccCCCCccccCCCCCCCCCCCCCccCCCCCeEEeCCccccCCCCcCcCHHHHHHHHHHHHHHHH
Confidence 0000000 00000 00 01 0
Q ss_pred --------eEEEE-eCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEcCCCCC
Q 004968 581 --------GKVLV-EGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIG 651 (721)
Q Consensus 581 --------~~vl~-eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~~~g 651 (721)
.+... +++|++||+||++...+++|++.|+++|++++++++++++|||.+.|++++++++.|+|||+| .|
T Consensus 258 ~~~~~~~~~e~~~~~~ad~~iv~~Gs~~~~a~eAv~~Lr~~G~~v~~l~~~~l~Pfp~~~i~~~~~~~k~VivvEe~-~g 336 (376)
T PRK08659 258 KNRDDIVLYEEYMLEDAEVVVVAYGSVARSARRAVKEAREEGIKVGLFRLITVWPFPEEAIRELAKKVKAIVVPEMN-LG 336 (376)
T ss_pred HHHhhcCCceeecCCCCCEEEEEeCccHHHHHHHHHHHHhcCCceEEEEeCeecCCCHHHHHHHHhcCCEEEEEeCC-HH
Confidence 01111 468999999999999999999999999999999999999999999999999999999999999 47
Q ss_pred ChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHH
Q 004968 652 GFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSL 709 (721)
Q Consensus 652 G~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~ 709 (721)
.+..++...+.. ..++..+... .|. -++++.|.+.++++
T Consensus 337 ~l~~el~~~~~~------~~~~~~i~~~-----~G~--------~~~~~ei~~~~~~~ 375 (376)
T PRK08659 337 QMSLEVERVVNG------RAKVEGINKI-----GGE--------LITPEEILEKIKEV 375 (376)
T ss_pred HHHHHHHHHhCC------CCCeeEEecc-----CCC--------cCCHHHHHHHHHhh
Confidence 666666654431 1112222211 111 27889999888764
|
|
| >PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.2e-19 Score=195.56 Aligned_cols=280 Identities=16% Similarity=0.129 Sum_probs=199.3
Q ss_pred cCCCeEEEecCCCCccChHHHHHhCC-----CcEeeccccHHHHHHHHHHHHhCCCeeEEEecHhhHHHHHHHHHHHhhc
Q 004968 417 KDKDIVVVHAGMEMDLSLQLFQEKFP-----ERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQ 491 (721)
Q Consensus 417 ~d~~iv~i~ad~~~~~~l~~f~~~fp-----~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~tys~Fl~ra~dqi~~~~a~ 491 (721)
.+.++++.-+=.+.+.-++.+.+..| ..|+.+ =+|.++++++.|+|.+|.|.+++|.+..+..+.|.+ ..++.
T Consensus 26 Ag~~~~a~YPITPsTeI~e~la~~~~~g~~~~~~vq~-E~E~~A~~~~~GAs~aGaRa~TaTS~~Gl~lm~E~l-~~aa~ 103 (407)
T PRK09622 26 AQIDVVAAYPITPSTPIVQNYGSFKANGYVDGEFVMV-ESEHAAMSACVGAAAAGGRVATATSSQGLALMVEVL-YQASG 103 (407)
T ss_pred hCCCEEEEECCCCccHHHHHHHHHhhCCCcCcEEEee-ccHHHHHHHHHHHHhhCcCEEeecCcchHHHHhhHH-HHHHH
Confidence 46677766554444333345554444 346654 499999999999999999999999999999999988 57789
Q ss_pred CCcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhC-----CCCEEEEecCCCc---
Q 004968 492 QRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASID-----DRPVCFRYPRGAI--- 563 (721)
Q Consensus 492 ~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~-----~~P~~ir~~r~~~--- 563 (721)
.++|+|++...+|+.+ .-+++....|+...+ ..++.+++|+|+||++++...|++.+ .-|++++++....
T Consensus 104 ~~~P~V~~~~~R~~~~-~~~i~~d~~D~~~~r-~~g~ivl~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~~sh~ 181 (407)
T PRK09622 104 MRLPIVLNLVNRALAA-PLNVNGDHSDMYLSR-DSGWISLCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFLCSHT 181 (407)
T ss_pred hhCCEEEEEeccccCC-CcCCCchHHHHHHHh-cCCeEEEeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhhhhCc
Confidence 9999888886666533 478999999976555 57899999999999999999999863 4699987754421
Q ss_pred -ccccCCCC----------CCc--------c--ee------------------------------------cCc----eE
Q 004968 564 -VRTDLPGY----------RGI--------P--IE------------------------------------IGK----GK 582 (721)
Q Consensus 564 -~~~~~p~~----------~~~--------~--~~------------------------------------~gk----~~ 582 (721)
...++++. +.+ + .. .++ .+
T Consensus 182 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~k~~g~~y~~~e 261 (407)
T PRK09622 182 AQNVRPLSDEVAYQFVGEYQTKNSMLDFDKPVTYGAQTEEDWHFEHKAQLHHALMSSSSVIEEVFNDFAKLTGRKYNLVE 261 (407)
T ss_pred eeeecCCCHHHHhhccCcccccccccCCCCCccCCCCCCCCeeEEechhcchhhhhhHHHHHHHHHHHHHHhCCCCCcee
Confidence 00111000 000 0 00 000 00
Q ss_pred EE-EeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEcCCC-CCChHHHHHHH
Q 004968 583 VL-VEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHVSHF 660 (721)
Q Consensus 583 vl-~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~~-~gG~gs~v~~~ 660 (721)
.. .+++|++||+||+++..+++|++.|+++|+++++|++++++|||.+.|.+++++++.|+|+|++. .||+|+.+.+.
T Consensus 262 ~~~~edad~~iV~~Gs~~~~a~ea~~~L~~~G~kvgvi~~r~~~Pfp~~~l~~~l~~~k~VvVvE~~~~~Gg~G~l~~ev 341 (407)
T PRK09622 262 TYQLEDAEVAIVALGTTYESAIVAAKEMRKEGIKAGVATIRVLRPFPYERLGQALKNLKALAILDRSSPAGAMGALFNEV 341 (407)
T ss_pred ecCCCCCCEEEEEEChhHHHHHHHHHHHHhCCCCeEEEEeeEhhhCCHHHHHHHHhcCCEEEEEeCCCCCCCccHHHHHH
Confidence 00 13679999999999999999999999999999999999999999999999999999999999997 68888866655
Q ss_pred HHhcCCCCC-CCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhh
Q 004968 661 IALDGLLDS-GVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 711 (721)
Q Consensus 661 l~~~~~~~~-~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 711 (721)
+..-..... ..++ .++ ..|+..| ..+++++|.+.++++..
T Consensus 342 ~~al~~~~~~~~~~-v~~--~~~g~gG--------~~~t~~~i~~~~~~l~~ 382 (407)
T PRK09622 342 TSAVYQTQGTKHPV-VSN--YIYGLGG--------RDMTIAHLCEIFEELNE 382 (407)
T ss_pred HHHHhccCcCCCce-Eee--eEECCCC--------CCCCHHHHHHHHHHHHh
Confidence 543221100 0111 011 1222222 13788999998887764
|
|
| >KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3e-20 Score=191.15 Aligned_cols=204 Identities=16% Similarity=0.206 Sum_probs=149.3
Q ss_pred hHhcCCCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHHhCc--hhhhHHHHhhCCCCCCCCC-CCCCC---
Q 004968 113 IVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGR--RSLIHTLRKKDGISGYTSR-SESEY--- 186 (721)
Q Consensus 113 ~~~~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr--~~~~~~~r~~ggl~G~~~~-~es~~--- 186 (721)
...+..|+.|.+.||-.+.+.+-... ++.|-||. .++++.+.+++|- ++-|.. -+|...|..+. .+|+|
T Consensus 83 K~k~IRGFCHLy~GQEAvavGme~ai-t~~D~iIt--sYR~Hg~~~~~G~S~~~v~aE--L~Gr~~Gc~kGKGGSMHmy~ 157 (394)
T KOG0225|consen 83 KAKKIRGFCHLYDGQEAVAVGMEAAI-TKSDSIIT--SYRCHGWTYLRGVSVREVLAE--LMGRQAGCSKGKGGSMHMYA 157 (394)
T ss_pred hhhhhceeeeecccHHHHHHHHHHhc-cCCCceEE--EeeeeeEEeecCccHHHHHHH--HhccccccccCCCcceeeec
Confidence 33456899999999955555443333 57899999 8888888888886 333322 24556666664 34766
Q ss_pred -CCcC-cCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCC
Q 004968 187 -DPFN-AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESP 264 (721)
Q Consensus 187 -d~~~-~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~ 264 (721)
+++| .|.+|.++|.+.|+|+|.++++++...+++.|||+.++|+.||++|+|+.|++|+||||+||.|- +-|..
T Consensus 158 k~FyGGnGIVGAQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~NMA~LW~LP~IFvCENN~yG-MGTs~--- 233 (394)
T KOG0225|consen 158 KNFYGGNGIVGAQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFNMAALWKLPVIFVCENNHYG-MGTSA--- 233 (394)
T ss_pred ccccCccceeccCCCccccHHHHHHhccCCceEEEEeccccccchhHHHHhhHHHHhCCCEEEEEccCCCc-cCcch---
Confidence 3454 79999999999999999999999999999999999999999999999999999999999999982 22211
Q ss_pred CcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHH
Q 004968 265 KTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDL 344 (721)
Q Consensus 265 ~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l 344 (721)
.|...++.|- + ++ .. +..+ .|||.|+-.+
T Consensus 234 -----------~Rasa~teyy---------------------k------RG-------~y-----iPGl-~VdGmdvlaV 262 (394)
T KOG0225|consen 234 -----------ERASASTEYY---------------------K------RG-------DY-----IPGL-KVDGMDVLAV 262 (394)
T ss_pred -----------hhhhcChHHH---------------------h------cc-------CC-----CCce-EECCcchhhH
Confidence 1111111110 0 11 01 1223 5899999999
Q ss_pred HHHHHHHHhc--CCCCCEEEEEEEeccCCCcccc
Q 004968 345 ISVLQEVASL--GSMGPVLVHVVTEENRRAEDTQ 376 (721)
Q Consensus 345 ~~al~~a~~~--~~~~P~lI~v~T~kg~G~~~ae 376 (721)
.++.+.|++. +.++|.++++.|.+=.|++-++
T Consensus 263 r~a~KfA~~~~~~g~GPilmE~~TYRy~GHSmSD 296 (394)
T KOG0225|consen 263 REATKFAKKYALEGKGPILMEMDTYRYHGHSMSD 296 (394)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEeeeeecccccCC
Confidence 9998888764 2479999999999988877654
|
|
| >PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.3e-19 Score=191.58 Aligned_cols=269 Identities=14% Similarity=0.168 Sum_probs=190.9
Q ss_pred HcCCCeEEEecCCCCccChHHHH---HhCCCcEeeccccHHHHHHHHHHHHhCCCeeEEEecHhhHHHHHHHHHHHhhcC
Q 004968 416 EKDKDIVVVHAGMEMDLSLQLFQ---EKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQ 492 (721)
Q Consensus 416 ~~d~~iv~i~ad~~~~~~l~~f~---~~fp~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~tys~Fl~ra~dqi~~~~a~~ 492 (721)
+.+.++++.-+=.+.+.-++.+. +++...|+.+ =+|.+++++|.|+|++|.|.+++|++..+..+.+++ ..++..
T Consensus 18 ~ag~~~~a~YPITPsTeI~e~la~~~~~~g~~~vq~-E~E~aA~~~a~GAs~aG~Ra~taTSg~G~~lm~E~~-~~a~~~ 95 (375)
T PRK09627 18 ECGCRFFGGYPITPSSEIAHEMSVLLPKCGGTFIQM-EDEISGISVALGASMSGVKSMTASSGPGISLKAEQI-GLGFIA 95 (375)
T ss_pred HhCCCEEEEeCCCChhHHHHHHHHHHHHcCCEEEEc-CCHHHHHHHHHHHHhhCCCEEeecCCchHHHHhhHH-HHHHhc
Confidence 34667766554444332233333 3444556665 599999999999999999999999999988888887 567889
Q ss_pred CcceEEEE-cCCCCcCCCCCCcCcHHHHHHHc-----cCCCcEEEeeCCHHHHHHHHHHHHHhCC---CCEEEEecCCCc
Q 004968 493 RLPVRFVI-TSAGLVGSDGPTQCGAFDITFMS-----CLPNMIVMAPSDEDELVDMVATVASIDD---RPVCFRYPRGAI 563 (721)
Q Consensus 493 ~lpVv~v~-~~~G~~G~dG~TH~~~~dia~~~-----~iPnl~V~~Psd~~E~~~~l~~a~~~~~---~P~~ir~~r~~~ 563 (721)
++|++++. .|+|. +..-||...+.|+...+ ..| ++|++|+|++|++++...|++.++ -|++++.+....
T Consensus 96 e~P~V~~~~~R~Gp-stG~p~~~~q~D~~~~~~~~hgd~~-~ivl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~~ls 173 (375)
T PRK09627 96 EIPLVIVNVMRGGP-STGLPTRVAQGDVNQAKNPTHGDFK-SIALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDETVG 173 (375)
T ss_pred cCCEEEEEeccCCC-cCCCCCccchHHHHHHhcCCCCCcC-cEEEeCCCHHHHHHHHHHHHHHHHHHcCceEEecchHHh
Confidence 99999877 55565 22348888888877666 344 459999999999999999998644 499987753110
Q ss_pred ---ccccCCC--------------------CCCcce------e-------------------------------------
Q 004968 564 ---VRTDLPG--------------------YRGIPI------E------------------------------------- 577 (721)
Q Consensus 564 ---~~~~~p~--------------------~~~~~~------~------------------------------------- 577 (721)
...++|+ ...+.. .
T Consensus 174 h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~k~ 253 (375)
T PRK09627 174 HMYGKAVIPDLEEVQKMIINRKEFDGDKKDYKPYGVAQDEPAVLNPFFKGYRYHVTGLHHGPIGFPTEDAKICGKLIDRL 253 (375)
T ss_pred CCeeeccCCChHhccccccccccccCCcccccCCccCCCCCcccCCCCCCceEEecCccccccCCcCCCHHHHHHHHHHH
Confidence 0000000 000000 0
Q ss_pred ----------cCceEEEE-eCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEc
Q 004968 578 ----------IGKGKVLV-EGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVE 646 (721)
Q Consensus 578 ----------~gk~~vl~-eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvE 646 (721)
+...+... +++|++||+||+....+.+|++.|+++|++++++.+++++|||.+.|++.+++.+.|+|||
T Consensus 254 ~~k~~~~~~~~~~~e~y~~~dAd~~IV~~GSt~~~~keAv~~lr~~G~kvg~l~~~~~~PfP~~~i~~~l~~~k~viVvE 333 (375)
T PRK09627 254 FNKIESHQDEIEEYEEYMLDDAEILIIAYGSVSLSAKEAIKRLREEGIKVGLFRPITLWPSPAKKLKEIGDKFEKILVIE 333 (375)
T ss_pred HHHHHHHhhhcCCceeeCCCCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEeCeEECCCHHHHHHHHhcCCEEEEEc
Confidence 00001111 2578999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHH
Q 004968 647 EGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSL 709 (721)
Q Consensus 647 e~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~ 709 (721)
+|. |+|..+|.+.+... ++..++. + .|. -++++.|.+.++++
T Consensus 334 ~n~-Gql~~~v~~~~~~~-------~~~~i~~---~--~G~--------~~~~~~i~~~i~~~ 375 (375)
T PRK09627 334 LNM-GQYLEEIERVMQRD-------DFHFLGK---A--NGR--------PISPSEIIAKVKEL 375 (375)
T ss_pred CCh-HHHHHHHHHHhCCC-------CceEEee---e--CCC--------cCCHHHHHHHHHhC
Confidence 998 88998888765321 1222221 1 122 27889999888763
|
|
| >PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.9e-18 Score=184.25 Aligned_cols=238 Identities=16% Similarity=0.168 Sum_probs=175.4
Q ss_pred HcCCCeEEEecCCCCccChHHHHHhCC--C--cEeeccccHHHHHHHHHHHHhCCCeeEEEecHhhHHHHHHHHHHHhhc
Q 004968 416 EKDKDIVVVHAGMEMDLSLQLFQEKFP--E--RYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQ 491 (721)
Q Consensus 416 ~~d~~iv~i~ad~~~~~~l~~f~~~fp--~--R~~d~GIaE~~~v~~AaGlA~~G~~p~~~tys~Fl~ra~dqi~~~~a~ 491 (721)
..+.+++..-+=.+.+.-+..+.+..+ + -.+-..=+|.+++++|.|+|++|.|.+++|++..+..+.|++ ..++.
T Consensus 18 ~ag~~~~a~YPITPsTei~e~la~~~~~G~~~~~~~~~E~E~aA~~~aiGAs~aGaRa~TaTSg~Gl~lm~E~l-~~aa~ 96 (390)
T PRK08366 18 HARVQVVAAYPITPQTSIIEKIAEFIANGEADIQYVPVESEHSAMAACIGASAAGARAFTATSAQGLALMHEML-HWAAG 96 (390)
T ss_pred HhCCCEEEEECCCChhHHHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHhhCCCeEeeeCcccHHHHhhHH-HHHHh
Confidence 346777765554443333344554444 2 222233599999999999999999999999999999999988 57789
Q ss_pred CCcceEEEEc-CCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhC---CCCEEEEecCCCcc---
Q 004968 492 QRLPVRFVIT-SAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASID---DRPVCFRYPRGAIV--- 564 (721)
Q Consensus 492 ~~lpVv~v~~-~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~---~~P~~ir~~r~~~~--- 564 (721)
.++|+|++.. |+|. + .+++|+.+.|+.+.+ -.++.+++|+|+||+.++...|++.+ .-|++++++.....
T Consensus 97 ~~lPiVi~~~~R~~p-~-~~~~~~~q~D~~~~~-d~g~i~~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~sh~~ 173 (390)
T PRK08366 97 ARLPIVMVDVNRAMA-P-PWSVWDDQTDSLAQR-DTGWMQFYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFILSHTY 173 (390)
T ss_pred cCCCEEEEEeccCCC-C-CCCCcchhhHHHHHh-hcCEEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCccccccc
Confidence 9999998774 5454 3 579999999976555 46899999999999999999999854 45999887532110
Q ss_pred -ccc----------CCC-CC-------Cccee--------------------------------------cCceEE--EE
Q 004968 565 -RTD----------LPG-YR-------GIPIE--------------------------------------IGKGKV--LV 585 (721)
Q Consensus 565 -~~~----------~p~-~~-------~~~~~--------------------------------------~gk~~v--l~ 585 (721)
..+ ++. .. ..+.. +|+-+. ..
T Consensus 174 ~~v~~~~~~~v~~~~~~~~~~~~~~~~~~p~s~~~~~~~~~~~e~~~~~~~~~e~~~~~i~~~~~~~~k~~gr~~~~~~e 253 (390)
T PRK08366 174 DVVEMIPQELVDEFLPPRKPLYSLADFDNPISVGALATPADYYEFRYKIAKAMEEAKKVIKEVGKEFGERFGRDYSQMIE 253 (390)
T ss_pred ccccCCCHHHHhhhcCccccccccCCCCCCcccccCCCCcceeeeeHhhhHHHHhHHHHHHHHHHHHHHHhCccccccce
Confidence 000 000 00 00000 111111 11
Q ss_pred ----eCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEcCCCC-CChHHHH
Q 004968 586 ----EGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSI-GGFGSHV 657 (721)
Q Consensus 586 ----eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~~~-gG~gs~v 657 (721)
+++|++||+||+....+++|++.|+++|++++++.+++++|||.+.|++++++.+.|+|+|.+.. |++|..+
T Consensus 254 ~y~~edAe~~iV~~Gs~~~~~~eav~~lr~~G~kvg~l~i~~~~PfP~~~i~~~l~~~k~ViVvE~n~~~Gq~g~l~ 330 (390)
T PRK08366 254 TYYTDDADFVFMGMGSLMGTVKEAVDLLRKEGYKVGYAKVRWFRPFPKEELYEIAESVKGIAVLDRNFSFGQEGILF 330 (390)
T ss_pred ecCCCCCCEEEEEeCccHHHHHHHHHHHHhcCCceeeEEEeeecCCCHHHHHHHHhcCCEEEEEeCCCCCCcccHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999974 7755333
|
|
| >COG3957 Phosphoketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.6e-17 Score=181.89 Aligned_cols=466 Identities=14% Similarity=0.135 Sum_probs=277.3
Q ss_pred CCCCCCcccHHHHHHHHhcccC-CCCcE-EEecCCchHH---HHHHHhCc-----------hhh----hHHHHhhCCCCC
Q 004968 118 EKSLKSSLAAVELTVALHHVFH-APVDK-ILWDVGEQTY---AHKILTGR-----------RSL----IHTLRKKDGISG 177 (721)
Q Consensus 118 ~Gh~~sslg~vel~~aL~~vf~-~p~D~-iv~d~GH~~y---~h~~ltGr-----------~~~----~~~~r~~ggl~G 177 (721)
-||.|.+.|+.-+.+-+-++-. ...+. .|..-||..- +..+|.|. .+. +..|+-.||+.+
T Consensus 60 lGHwGt~pg~s~~Y~H~nr~i~~~d~~~~yv~GpGHg~~~~~~~~yLeGtys~~yp~~s~d~~Gm~rL~~qFs~PgGi~S 139 (793)
T COG3957 60 LGHWGTQPGLSFIYAHLNRLISKYDANMAYVMGPGHGGPAIVANTYLEGTYSEMYPDISQDEEGLNRLFKQFSFPGGIGS 139 (793)
T ss_pred cccccCCCCchhhhhhhhHHHHhhCcceEEEecCCCCcceeeeccccCCccccccccccccHHHHHHHHHhccCCCCccc
Confidence 4899999998766554433322 11233 3345577651 22334442 112 233333466766
Q ss_pred CCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccch---HHHHHHH-hhhcCCCEEEEEECCC
Q 004968 178 YTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQ---AYEAMSN-AGYLDSNMIVILNDSR 253 (721)
Q Consensus 178 ~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~---~~Ealn~-A~~~~~plivIv~dN~ 253 (721)
|..+ +.|+..--.|-+|++++.|.|+|+- .++-.++|++|||+-.+|. +|-+--+ .-....+++-|+.-|+
T Consensus 140 H~~p-etPGsIhEGGeLGy~l~ha~gAa~d----~Pdli~~~vvGDGeaetgplatsWhs~kf~np~~dGavLPIL~lNG 214 (793)
T COG3957 140 HVAP-ETPGSIHEGGELGYALSHAYGAAFD----NPDLIVACVVGDGEAETGPLATSWHSNKFLNPARDGAVLPILHLNG 214 (793)
T ss_pred ccCC-CCCCccCcCcchhHHHHHHHHhhcC----CCCcEEEEEecccccccCccccccccccccCccccCceeeEEEecc
Confidence 6654 3444333458999999999988764 7799999999999543333 3333111 1122378999999999
Q ss_pred CC-cCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceE
Q 004968 254 HS-LHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYY 332 (721)
Q Consensus 254 ~~-s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~ 332 (721)
+. +-||- ++.+ . + .+ . ..+|+.+||.-
T Consensus 215 ykI~npT~-------lar~-------s--------------------~--~e--------l--------~~~f~G~Gy~p 242 (793)
T COG3957 215 YKIENPTV-------LARI-------S--------------------D--EE--------L--------KALFEGYGYEP 242 (793)
T ss_pred eeccCcee-------eeec-------C--------------------h--HH--------H--------HHHHhhCCCce
Confidence 83 22221 1111 0 0 00 0 34789999997
Q ss_pred EeccCCCCHHHH--------HHHHHH-------HHhc-CCCCCE--EEEEEEeccCCCcccccc---cccccccccCC--
Q 004968 333 IGPVDGHNIEDL--------ISVLQE-------VASL-GSMGPV--LVHVVTEENRRAEDTQKS---EAIEKQQEGAS-- 389 (721)
Q Consensus 333 ~g~vdGhd~~~l--------~~al~~-------a~~~-~~~~P~--lI~v~T~kg~G~~~ae~~---~~~~~~Hg~~~-- 389 (721)
+ -++|+|+++. ..++++ +++. ...+|. +|..+|-||++-+..-.+ ++.-..|-++-
T Consensus 243 ~-~veg~d~~d~hq~mAa~ldt~~~~i~~iq~~ar~~~~~~~p~wPmiilrtPkGwt~p~~idG~~~eg~~raHqvPl~~ 321 (793)
T COG3957 243 V-FVEGADPADMHQLMAAVLDTAFEEIQRIQRRARENNEAIRPRWPMIILRTPKGWTGPVEIDGKKLEGSWRAHQVPLKG 321 (793)
T ss_pred e-EecCCChHHhhhhHHHHHHHHHHHHHHHHHHHHhcccccCccccceeeecCCCCcCceeecceeccccchhccCCCCC
Confidence 6 5788888762 222222 2221 012232 578899999875432110 01222344420
Q ss_pred -----------------------C-CCCCCC-------------------------------C-------------CCcc
Q 004968 390 -----------------------D-SNSLPF-------------------------------G-------------NYSR 401 (721)
Q Consensus 390 -----------------------f-~~g~~~-------------------------------~-------------~~~~ 401 (721)
| +.|... + ....
T Consensus 322 ~~~~p~h~~~l~~wl~sy~p~elfde~gaL~~e~~~~ap~~~~Rm~~~p~angg~l~~eL~lPD~r~~~v~~~~~g~~~~ 401 (793)
T COG3957 322 HNLNPAHLLELEEWLKSYKPEELFDEHGALKPELRELAPKGEERMGANPHANGGLLPRELPLPDLRDYAVEVSEPGAVTA 401 (793)
T ss_pred CCCCchhhHHHHHHHHhcChHhhhcccCCCCHHHHHhccccccccCCCCcccCccccccCCCCChhhcCcccCCCCccch
Confidence 1 111100 0 0112
Q ss_pred cHHHHHHHHHHHHHHcCCC-eEEEecCCCCccChHHHHH---h--------------CCCcEeeccccHHHHHHHHHHHH
Q 004968 402 TYDDCFIEALVMEAEKDKD-IVVVHAGMEMDLSLQLFQE---K--------------FPERYFDVGMAEQHAVTFSAGLA 463 (721)
Q Consensus 402 ~~~~~~~~~L~~~~~~d~~-iv~i~ad~~~~~~l~~f~~---~--------------fp~R~~d~GIaE~~~v~~AaGlA 463 (721)
.-+.++++.+.+.++.|++ +.++++|-..|.++.+..+ + -.+|+++ .++|+.+.|.+.|++
T Consensus 402 ~~t~~lg~~l~dv~k~N~~~fRvf~PDE~aSNrl~~v~~~tkr~~~~~~~~ed~~lsp~GRV~e-~LSEh~c~Gwlegy~ 480 (793)
T COG3957 402 ESTTALGRFLRDVMKLNPDNFRVFGPDETASNRLGGVLKVTKRVWMAVTLPEDDFLSPDGRVME-VLSEHACQGWLEGYL 480 (793)
T ss_pred hhHHHHHHHHHHHHhcCccceEeeCCCcchhhhhHHHHHHhhhhhcccccCcccccCCCceeeh-hhcHHHHHHHHHHHH
Confidence 3367899999999999988 9999999888877743322 1 1369999 699999999999999
Q ss_pred hCCCeeEEEecHhhHH---HHHHHHH--HHhhc-----CCcceEEEEcCCCC--cCCCCCCcCcHHHHHH-HccCCC-cE
Q 004968 464 CGGLKPFCIIPSAFLQ---RAYDQVV--NDVDQ-----QRLPVRFVITSAGL--VGSDGPTQCGAFDITF-MSCLPN-MI 529 (721)
Q Consensus 464 ~~G~~p~~~tys~Fl~---ra~dqi~--~~~a~-----~~lpVv~v~~~~G~--~G~dG~TH~~~~dia~-~~~iPn-l~ 529 (721)
+.|.+-++++|-.|+- -++.|.. ..++. ...|-...+..++. .+.+|-|||...=+.+ +...++ +.
T Consensus 481 LtGr~glf~sYEaF~~iv~sm~nQh~kwl~v~~e~~wr~~~~Sln~l~TS~vw~QdhNGfsHQdPgf~~~~~~k~~d~vR 560 (793)
T COG3957 481 LTGRHGLFASYEAFAHIVDSMFNQHAKWLKVTREVEWRRPIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVANKKSDIVR 560 (793)
T ss_pred hcCCccceeeHHHHHHHHHHHHhhhHHHHHHHHhcccCCCCCcccceeehhhhhcccCCCccCCchHHHHHHhhccCcee
Confidence 9999999999999973 3333321 11121 12222222223444 4789999995443334 444565 57
Q ss_pred EEeeCCHHHHHHHHHHHHHhCCCCEEEEecCCCcccccCCCCCCcceecCceEEEE------eC-CcEEEEEechhh-HH
Q 004968 530 VMAPSDEDELVDMVATVASIDDRPVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLV------EG-KDVALLGYGAMV-QN 601 (721)
Q Consensus 530 V~~Psd~~E~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~gk~~vl~------eG-~dv~Iva~Gs~v-~~ 601 (721)
|+.|.|++-+..++..|+...++-.+|..+|++.+.. + +.+....-..++..+- +| .||++.+.|.+. -+
T Consensus 561 vyfPpDaNtlLav~d~~l~s~n~in~iVa~K~p~pq~-~-t~~qA~~~~~~G~~iwewas~d~gepdvV~A~~Gd~~t~e 638 (793)
T COG3957 561 VYFPPDANTLLAVYDHCLRSRNKINVIVASKQPRPQW-L-TMEQAEKHCTDGAGIWEWASGDDGEPDVVMACAGDVPTIE 638 (793)
T ss_pred EecCCCCcchhhhhhHHhhccCceEEEEecCCCccee-e-cHHHHHHHhhcCcEEEEeccCCCCCCCEEEEecCCcchHH
Confidence 8999999999999999998666667777777763321 0 0000000011111111 23 479999999876 88
Q ss_pred HHHHHHHHHhCC--CCeEEe---ecCcccc-------ccHHHHHHHhccCCeEEE
Q 004968 602 CLKARALLSKLG--IDVTVA---DARFCKP-------LDIKLVRELCQNHTFLIT 644 (721)
Q Consensus 602 al~Aa~~L~~~G--i~v~VI---d~~~l~P-------lD~e~i~~l~~~~~~vvv 644 (721)
+++|++.|++++ ++++|| |+..+.| ++.+.+.++.-+.+.+|.
T Consensus 639 ~laAa~~L~e~~p~l~vRvVnVvdl~rLq~~~~hphg~~d~efd~lFt~d~pvif 693 (793)
T COG3957 639 VLAAAQILREEGPELRVRVVNVVDLMRLQPPHDHPHGLSDAEFDSLFTTDKPVIF 693 (793)
T ss_pred HHHHHHHHHHhCccceEEEEEEecchhccCCccCCCCCCHHHHHhcCCCCcceee
Confidence 999999999998 777755 5555555 345566666544455543
|
|
| >PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.1e-17 Score=179.05 Aligned_cols=276 Identities=15% Similarity=0.171 Sum_probs=196.4
Q ss_pred cCCCeEEEecCCCCccChHHHHHhCC-----CcEeeccccHHHHHHHHHHHHhCCCeeEEEecHhhHHHHHHHHHHHhhc
Q 004968 417 KDKDIVVVHAGMEMDLSLQLFQEKFP-----ERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQ 491 (721)
Q Consensus 417 ~d~~iv~i~ad~~~~~~l~~f~~~fp-----~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~tys~Fl~ra~dqi~~~~a~ 491 (721)
.+.+++..-+=.+.+.-++.+.+..+ ..|+. .=+|.+++++|.|+|.+|.|.+++|.+..+..+.|++ ..++.
T Consensus 20 Ag~~v~a~YPITPsTei~e~la~~~~~g~~~~~~v~-~EsE~aA~~~~~GAs~aGaRa~TaTS~~Gl~lm~E~l-~~aag 97 (394)
T PRK08367 20 AKPKVIAAFPITPSTLVPEKISEFVANGELDAEFIK-VESEHSAISACVGASAAGVRTFTATASQGLALMHEVL-FIAAG 97 (394)
T ss_pred hCCCEEEEECCCCccHHHHHHHHHhhcCCcCeEEEE-eCCHHHHHHHHHHHHhhCCCeEeeeccchHHHHhhHH-HHHHH
Confidence 46777765554443333344444333 22333 3699999999999999999999999999999999987 67799
Q ss_pred CCcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCC--C---CEEEEecCCCc---
Q 004968 492 QRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDD--R---PVCFRYPRGAI--- 563 (721)
Q Consensus 492 ~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~--~---P~~ir~~r~~~--- 563 (721)
.++|++++...+++ +...++|....|+...+ --++.++.|+|.||+.++...|++.++ + |++++++....
T Consensus 98 ~~lP~V~vv~~R~~-~~p~~i~~d~~D~~~~r-d~g~~~~~a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~sH~ 175 (394)
T PRK08367 98 MRLPIVMAIGNRAL-SAPINIWNDWQDTISQR-DTGWMQFYAENNQEALDLILIAFKVAEDERVLLPAMVGFDAFILTHT 175 (394)
T ss_pred ccCCEEEEECCCCC-CCCCCcCcchHHHHhcc-ccCeEEEeCCCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhhcCc
Confidence 99999999855554 33558898888854444 456889999999999999999998766 4 99988764210
Q ss_pred -ccccCCC----------CCC--------cce----------------------------------e----cC-ceEEEE
Q 004968 564 -VRTDLPG----------YRG--------IPI----------------------------------E----IG-KGKVLV 585 (721)
Q Consensus 564 -~~~~~p~----------~~~--------~~~----------------------------------~----~g-k~~vl~ 585 (721)
...++|+ .+. .+. + .| +...+.
T Consensus 176 ~e~v~~~~~~~~~~~~~~~~~~~~~~d~~~p~~~g~~~~p~~~~~~~~~~~~~~~~~~~~i~e~~~e~~~~~grky~~~e 255 (394)
T PRK08367 176 VEPVEIPDQEVVDEFLGEYEPKHAYLDPARPITQGALAFPAHYMEARYTVWEAMENAKKVIDEAFAEFEKKFGRKYQKIE 255 (394)
T ss_pred ccccccCCHHHHhhhcCcccccccccCCCCCcccCCCCCCCceEEEEeecHHHHHHhHHHHHHHHHHHHHHhCCccceeE
Confidence 0011110 000 000 0 11 111111
Q ss_pred ----eCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEcCCC----CCChHHHH
Q 004968 586 ----EGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS----IGGFGSHV 657 (721)
Q Consensus 586 ----eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~~----~gG~gs~v 657 (721)
+++|++||+||+....+.+|++.|+++|++|+++.+++++|||.+.|++++++.+.|+|+|.+. .|.+..+|
T Consensus 256 ~yg~eDAe~viV~~GS~~~~~keav~~LR~~G~kVGllri~~~rPFP~~~i~~~l~~~k~ViVvE~n~s~g~~g~l~~dV 335 (394)
T PRK08367 256 EYRTEDAEIIFVTMGSLAGTLKEFVDKLREEGYKVGAAKLTVYRPFPVEEIRALAKKAKVLAFLEKNISFGLGGAVFADA 335 (394)
T ss_pred EeCCCCCCEEEEEeCccHHHHHHHHHHHHhcCCcceeEEEeEecCCCHHHHHHHHccCCEEEEEeCCCCCCCCCcHHHHH
Confidence 3689999999999999999999999999999999999999999999999999999999999986 36677788
Q ss_pred HHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhh
Q 004968 658 SHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 711 (721)
Q Consensus 658 ~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 711 (721)
...|...+ ...++..+ .++-.|. -+++++|.+.+.++++
T Consensus 336 ~aal~~~~---~~~~v~~~----~~glgg~--------~~~~~~~~~~~~~~~~ 374 (394)
T PRK08367 336 SAALVNES---EKPKILDF----IIGLGGR--------DVTFKQLDEALEIAEK 374 (394)
T ss_pred HHHHhccC---CCCeEEEE----EeCCCCC--------CCCHHHHHHHHHHHHH
Confidence 77764322 12222221 1111221 3789999988887664
|
|
| >TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-17 Score=192.34 Aligned_cols=252 Identities=18% Similarity=0.213 Sum_probs=183.2
Q ss_pred HHHHHHHHHHHHHcCCCeEEEecCCCCccChHHHH---HhCCCcEeeccccHHHHHHHHHHHHhCCCeeEEEecHhhHHH
Q 004968 404 DDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQ---EKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQR 480 (721)
Q Consensus 404 ~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~---~~fp~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~tys~Fl~r 480 (721)
.+|++.+.. ....+++..-+=.+.+.-++.++ +++ +-.+-..-+|.+++++|.|+|++|.|.+++|++..+..
T Consensus 199 NeAvA~ga~---~ag~~~~~~YPiTPsTei~e~la~~~~~~-~~~~~q~E~E~aA~~~a~GAs~aG~Ra~taTSg~Gl~l 274 (562)
T TIGR03710 199 NEAIALGAI---AAGLRFYAAYPITPASDILEFLAKHLKKF-GVVVVQAEDEIAAINMAIGASYAGARAMTATSGPGFAL 274 (562)
T ss_pred HHHHHHHHH---HhCCceecccCCCChhHHHHHHHHhhhhh-CcEEEeeccHHHHHHHHHhHHhcCCceeecCCCCChhH
Confidence 455555433 33556555443333222223333 333 45666678999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCcceEEEE-cCCCCcCCCCCCcCcHHHHHHHccCC----CcEEEeeCCHHHHHHHHHHHHHhCC---C
Q 004968 481 AYDQVVNDVDQQRLPVRFVI-TSAGLVGSDGPTQCGAFDITFMSCLP----NMIVMAPSDEDELVDMVATVASIDD---R 552 (721)
Q Consensus 481 a~dqi~~~~a~~~lpVv~v~-~~~G~~G~dG~TH~~~~dia~~~~iP----nl~V~~Psd~~E~~~~l~~a~~~~~---~ 552 (721)
+.|.+ ..++..++|+|++. +|+|. +..-||+..+.|+-+.+.-. ++.|++|+|++|+.++...|++.++ -
T Consensus 275 m~E~l-~~a~~~~~P~Vi~~~~R~gp-stg~~t~~eq~D~~~~~~~~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~ 352 (562)
T TIGR03710 275 MTEAL-GLAGMTETPLVIVDVQRGGP-STGLPTKTEQSDLLFALYGGHGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQT 352 (562)
T ss_pred hHHHH-hHHHhccCCEEEEEcccCCC-CCCCCCCccHHHHHHHhcCCCCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcC
Confidence 99988 77788999998887 55554 33347999999976655321 3889999999999999999998644 5
Q ss_pred CEEEEecCCCc---ccccCCC------------------CCCc--------cee-cC-----------------------
Q 004968 553 PVCFRYPRGAI---VRTDLPG------------------YRGI--------PIE-IG----------------------- 579 (721)
Q Consensus 553 P~~ir~~r~~~---~~~~~p~------------------~~~~--------~~~-~g----------------------- 579 (721)
|++++.+.... ...++|+ ...+ +.. .|
T Consensus 353 PViv~~D~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~~~~~~e~g~~~~~~ 432 (562)
T TIGR03710 353 PVIVLSDQYLANSYETVPPPDLDDLPIIDRGKVLEPEEEYKRYELTEDGISPRAIPGTPGGIHRATGDEHDETGHISEDP 432 (562)
T ss_pred CEEEEechHHhCCceeccCCChhhcccccccccccCCCCCCCCCcCCCCCCCCCcCCCCCceEEecCCccCCCCCcCCCH
Confidence 99987643210 0000000 0000 000 00
Q ss_pred ------------c----------eEEE-EeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHh
Q 004968 580 ------------K----------GKVL-VEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELC 636 (721)
Q Consensus 580 ------------k----------~~vl-~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~ 636 (721)
| .+.. .++++++||+||++...+.+|++.|+++|++++++.+++++|||.+.|++.+
T Consensus 433 ~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~da~~~iv~~Gs~~~~~~eav~~lr~~G~kvg~l~~~~~~PfP~~~i~~~l 512 (562)
T TIGR03710 433 ENRVKMMEKRARKLETIAKEIPEPEVYGDEDADVLVIGWGSTYGAIREAVERLRAEGIKVALLHLRLLYPFPKDELAELL 512 (562)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCceeecCCCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEeCeecCCCHHHHHHHH
Confidence 0 0111 1257899999999999999999999999999999999999999999999999
Q ss_pred ccCCeEEEEcCCCCCChHHHHHHHH
Q 004968 637 QNHTFLITVEEGSIGGFGSHVSHFI 661 (721)
Q Consensus 637 ~~~~~vvvvEe~~~gG~gs~v~~~l 661 (721)
++.+.|+|+|++..|++..+|...+
T Consensus 513 ~~~k~v~VvE~n~~Gql~~~v~~~~ 537 (562)
T TIGR03710 513 EGAKKVIVVEQNATGQLAKLLRAET 537 (562)
T ss_pred hcCCEEEEEccChhhhHHHHHHHHh
Confidence 9999999999998899999888765
|
The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions. |
| >cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC) | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-16 Score=164.64 Aligned_cols=203 Identities=13% Similarity=0.135 Sum_probs=134.7
Q ss_pred CCCCCcccHHHHHHHHhcccCCC----CcEEEecCCchHHHHHHH--hCchhhhHHHHhhCCCCCCCC-----CCCCCC-
Q 004968 119 KSLKSSLAAVELTVALHHVFHAP----VDKILWDVGEQTYAHKIL--TGRRSLIHTLRKKDGISGYTS-----RSESEY- 186 (721)
Q Consensus 119 Gh~~sslg~vel~~aL~~vf~~p----~D~iv~d~GH~~y~h~~l--tGr~~~~~~~r~~ggl~G~~~-----~~es~~- 186 (721)
++++ ..|+-.+..+|...++.. -+.+++...||.-.+.+. .|...+ ..++++.+...+|. ++-+-|
T Consensus 13 krfs-~eG~Es~~~~l~~~~~~~~~~~~~d~v~gm~HRgrln~L~~~lg~~~~-~if~ef~g~~~~~~~~~~~gdv~yHl 90 (265)
T cd02016 13 KRFG-LEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLGKPLE-QIFSEFEGKSEFPEDDEGSGDVKYHL 90 (265)
T ss_pred eEEE-ecCHHHHHHHHHHHHHHHHhcCCCeEEeccCcCCcHHHHHHHhCCCHH-HHHHHhhCCCCCCCCCCCCCCcCcCC
Confidence 4543 667655666666555532 134555556888655544 554221 22344433222211 110111
Q ss_pred -----------------CCcCcCCCcchHHHHHHHHHHHHHcC-----CCCeEEEEEcCCCc-ccchHHHHHHHhhhcCC
Q 004968 187 -----------------DPFNAGHGCNSVSAGLGMAVARDIKG-----KRECIVTVISNGTT-MAGQAYEAMSNAGYLDS 243 (721)
Q Consensus 187 -----------------d~~~~G~~G~~is~A~G~AlA~~l~g-----~~~~VvaviGDGal-~~G~~~Ealn~A~~~~~ 243 (721)
.....+|+|..+|.|+|+|+|.++++ ++..+|+++|||++ .+|.+||+||+|+.|++
T Consensus 91 g~~~~~~~~~~~~~~~~l~~npS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~~~EalNlA~l~~l 170 (265)
T cd02016 91 GYSSDRKTPSGKKVHLSLAPNPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGY 170 (265)
T ss_pred ccCcccccCCCCeeEEEecCCCcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCChHHHHHHHHHhcCC
Confidence 01224789999999999999999998 47889999999996 59999999999999998
Q ss_pred C---EEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCC
Q 004968 244 N---MIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQ 320 (721)
Q Consensus 244 p---livIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 320 (721)
| +|+||+||++. +.| +.. +.++ ...
T Consensus 171 p~gg~ifvveNNq~g-~sT-------~~~-------~~~~-------------------------------------~~~ 198 (265)
T cd02016 171 TTGGTIHIVVNNQIG-FTT-------DPR-------DSRS-------------------------------------SPY 198 (265)
T ss_pred CCCCEEEEEEeCCEE-EEe-------cHH-------Hhcc-------------------------------------ccc
Confidence 8 99999999983 211 110 0000 000
Q ss_pred ccceeeeeCceEEeccCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEEeccCCCcccc
Q 004968 321 GSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL--GSMGPVLVHVVTEENRRAEDTQ 376 (721)
Q Consensus 321 ~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~--~~~~P~lI~v~T~kg~G~~~ae 376 (721)
-..+++++|+..+ .|||+|++++.++.++|.+. +.++|++|++.|.+-+|+...+
T Consensus 199 ~~~~a~~~gip~~-~VdG~D~~aV~~a~~~A~~~~r~g~gp~lIe~~tYR~~GHse~D 255 (265)
T cd02016 199 CTDVAKMIGAPIF-HVNGDDPEAVVRATRLALEYRQKFKKDVVIDLVCYRRHGHNELD 255 (265)
T ss_pred HHHHHeecCCCEE-EEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCcC
Confidence 1335678899988 89999999998887766432 2578999999999999986543
|
OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle. |
| >cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.9e-16 Score=156.73 Aligned_cols=148 Identities=16% Similarity=0.216 Sum_probs=106.7
Q ss_pred HHHhh---CCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchH---HHHHHHhhhc
Q 004968 168 TLRKK---DGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQA---YEAMSNAGYL 241 (721)
Q Consensus 168 ~~r~~---ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~---~Ealn~A~~~ 241 (721)
.+||| |++++|+.+ +.+.....+|.+|++++.|+|+|+ ++++.+|+|++|||++++|.. ||+.+++...
T Consensus 36 lf~qfs~~gg~psH~~~-~tpGi~~~~G~LG~gLs~A~G~a~----d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~ 110 (227)
T cd02011 36 LFKQFSFPGGIPSHAAP-ETPGSIHEGGELGYSLSHAYGAVF----DNPDLIVACVVGDGEAETGPLATSWHSNKFLNPA 110 (227)
T ss_pred HHHhcCCCCCCCCCCcc-cCCCeeecccchhhHHHHHHHhhh----cCCCcEEEEEECcCHHHHHhHHHHHHhhhhhccc
Confidence 34664 456677765 567777789999999999999974 578999999999999999995 9999999888
Q ss_pred C-CCEEEEEECCCCC-cCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCC
Q 004968 242 D-SNMIVILNDSRHS-LHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGP 319 (721)
Q Consensus 242 ~-~plivIv~dN~~~-s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 319 (721)
+ .+|+.|++||+++ +.||.... + +..++
T Consensus 111 ~~~~vLpIld~Ng~~i~~pt~~~~-------~-----------------------------~~e~l-------------- 140 (227)
T cd02011 111 TDGAVLPILHLNGYKISNPTILAR-------I-----------------------------SHEEL-------------- 140 (227)
T ss_pred ccCCeEEEEEcCCCcccCCccccc-------c-----------------------------CchhH--------------
Confidence 8 8999999999984 22221000 0 00011
Q ss_pred CccceeeeeCceEEeccCCCCHHHHHHHHHHHHh--------c--------CCCCCE--EEEEEEeccCCCc
Q 004968 320 QGSTLFEELGLYYIGPVDGHNIEDLISVLQEVAS--------L--------GSMGPV--LVHVVTEENRRAE 373 (721)
Q Consensus 320 ~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~--------~--------~~~~P~--lI~v~T~kg~G~~ 373 (721)
..+|++|||..+ .|||||++++.++++++.+ . ...+|. +|.++|-||+.-|
T Consensus 141 --~~~~~~yG~~~~-~VDG~D~~av~~~~a~a~~~~~~~i~~~~~~~~~~~~~~~~~wp~~~~~~~kg~~~p 209 (227)
T cd02011 141 --EALFRGYGYEPY-FVEGDDPETMHQAMAATLDWAIEEIKAIQKRAREGGDASRPRWPMIVLRTPKGWTGP 209 (227)
T ss_pred --HHHHHhCCCceE-EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCEEEEeCCCCCCCC
Confidence 346889999998 6899999877665543311 1 113343 7889999999643
|
This enzyme requires divalent magnesium ions and TPP for activity. |
| >cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc) | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.9e-16 Score=155.72 Aligned_cols=132 Identities=14% Similarity=0.126 Sum_probs=95.8
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|++|+++|+|+|+++|. ++++|||++|||+|+ |+..+|.+|+++++|+++||.||+. +|
T Consensus 51 ~~g~mG~~lpaaiGa~la~----p~r~vv~i~GDG~f~--m~~~eL~Ta~~~~lpvi~vV~NN~~-------------yg 111 (196)
T cd02013 51 SFGNCGYALPAIIGAKAAA----PDRPVVAIAGDGAWG--MSMMEIMTAVRHKLPVTAVVFRNRQ-------------WG 111 (196)
T ss_pred CCcccccHHHHHHHHHHhC----CCCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEECch-------------hH
Confidence 4588999999999999884 589999999999997 8899999999999999999988875 23
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~ 349 (721)
.+.. .++.. |. . ...+. ..-.++...++++||+++..+ ++.++|.++|+
T Consensus 112 ~~~~-~q~~~----~~------~---~~~~~--------------~~~~~d~~~lA~a~G~~~~~v---~~~~el~~al~ 160 (196)
T cd02013 112 AEKK-NQVDF----YN------N---RFVGT--------------ELESESFAKIAEACGAKGITV---DKPEDVGPALQ 160 (196)
T ss_pred HHHH-HHHHH----cC------C---Ccccc--------------cCCCCCHHHHHHHCCCEEEEE---CCHHHHHHHHH
Confidence 2211 10000 00 0 00000 011245567899999998855 67999999999
Q ss_pred HHHh-cCCCCCEEEEEEEeccCC
Q 004968 350 EVAS-LGSMGPVLVHVVTEENRR 371 (721)
Q Consensus 350 ~a~~-~~~~~P~lI~v~T~kg~G 371 (721)
++.+ ...++|++|++.+.+..+
T Consensus 161 ~a~~~~~~~~p~liev~v~~~~~ 183 (196)
T cd02013 161 KAIAMMAEGKTTVIEIVCDQELG 183 (196)
T ss_pred HHHhcCCCCCeEEEEEEeCcccC
Confidence 9875 113789999999976554
|
Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity. |
| >cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL) | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-15 Score=148.75 Aligned_cols=126 Identities=14% Similarity=0.097 Sum_probs=89.7
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|.+|+++|+|+|+++|. ++++|||++|||+++ |..++|++|+.+++|+++||.||+..++
T Consensus 46 ~~g~mG~~lp~AiGa~la~----~~~~vv~i~GDG~f~--~~~~el~ta~~~~lpv~ivv~NN~~~~~------------ 107 (172)
T cd02004 46 TFGTLGVGLGYAIAAALAR----PDKRVVLVEGDGAFG--FSGMELETAVRYNLPIVVVVGNNGGWYQ------------ 107 (172)
T ss_pred CCCcccchHHHHHHHHHhC----CCCeEEEEEcchhhc--CCHHHHHHHHHcCCCEEEEEEECccccc------------
Confidence 3488999999999999884 589999999999997 7789999999999998888877764211
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~ 349 (721)
+ +.+++.. | .. ....+ .....++...+++++|+++..+ ++.++|.++++
T Consensus 108 -~-~~~~~~~----~------~~--~~~~~--------------~~~~~~d~~~la~a~G~~~~~v---~~~~el~~al~ 156 (172)
T cd02004 108 -G-LDGQQLS----Y------GL--GLPVT--------------TLLPDTRYDLVAEAFGGKGELV---TTPEELKPALK 156 (172)
T ss_pred -c-hhhhhhh----c------cC--CCcee--------------ccCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHH
Confidence 1 0000000 0 00 00000 0001234466889999999854 47999999999
Q ss_pred HHHhcCCCCCEEEEEEE
Q 004968 350 EVASLGSMGPVLVHVVT 366 (721)
Q Consensus 350 ~a~~~~~~~P~lI~v~T 366 (721)
++.+ .++|++|++++
T Consensus 157 ~a~~--~~~p~liev~i 171 (172)
T cd02004 157 RALA--SGKPALINVII 171 (172)
T ss_pred HHHH--cCCCEEEEEEc
Confidence 9987 48999999986
|
Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity. |
| >cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor | Back alignment and domain information |
|---|
Probab=99.63 E-value=3e-15 Score=146.12 Aligned_cols=157 Identities=21% Similarity=0.248 Sum_probs=106.8
Q ss_pred CCCcEEEecCCchH-HHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEE
Q 004968 140 APVDKILWDVGEQT-YAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIV 218 (721)
Q Consensus 140 ~p~D~iv~d~GH~~-y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~Vv 218 (721)
.++|.++.|.|+.. +...++.- . ...+.....+.|++|+++|+|+|++++.+ +++||
T Consensus 11 ~~~~~i~~d~g~~~~~~~~~~~~-----------------~-~~~~~~~~~~~g~~G~~~~~a~Gaa~a~~----~~~vv 68 (168)
T cd00568 11 PEDAIVVNDAGNSAYWAYRYLPL-----------------R-RGRRFLTSTGFGAMGYGLPAAIGAALAAP----DRPVV 68 (168)
T ss_pred CCCCEEEeCCcHHHHHHHHheee-----------------C-CCCcEEeCCCchhhhhhHHHHHHHHHhCC----CCcEE
Confidence 46788999999754 33322210 0 00112223467999999999999999854 88999
Q ss_pred EEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhcc
Q 004968 219 TVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRI 298 (721)
Q Consensus 219 aviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~ 298 (721)
+++|||+++ +.+|+|++|+.+++|+++||.||+..+ .... .++.. + .
T Consensus 69 ~~~GDG~~~--~~~~~l~ta~~~~~~~~~iv~nN~~~~-------------~~~~-~~~~~----~--------~----- 115 (168)
T cd00568 69 CIAGDGGFM--MTGQELATAVRYGLPVIVVVFNNGGYG-------------TIRM-HQEAF----Y--------G----- 115 (168)
T ss_pred EEEcCcHHh--ccHHHHHHHHHcCCCcEEEEEECCccH-------------HHHH-HHHHH----c--------C-----
Confidence 999999998 588999999999999999999999731 1100 00000 0 0
Q ss_pred CcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEE
Q 004968 299 GRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVT 366 (721)
Q Consensus 299 g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T 366 (721)
+.. .....-.++...+++++|+++..+ ++++++.++++++++ .++|++|+++|
T Consensus 116 ~~~----------~~~~~~~~d~~~~a~~~G~~~~~v---~~~~~l~~a~~~a~~--~~~p~~i~v~~ 168 (168)
T cd00568 116 GRV----------SGTDLSNPDFAALAEAYGAKGVRV---EDPEDLEAALAEALA--AGGPALIEVKT 168 (168)
T ss_pred CCc----------ccccCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHh--CCCCEEEEEEC
Confidence 000 000011123456789999999854 469999999999986 58999999986
|
These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes. |
| >cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl) | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.4e-15 Score=150.13 Aligned_cols=182 Identities=19% Similarity=0.168 Sum_probs=115.0
Q ss_pred HHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHH
Q 004968 130 LTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVAR 208 (721)
Q Consensus 130 l~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~ 208 (721)
+..+|..++. +++.|+.|.| |+.|+...+.-++. +++- ...+.|++|+++|+|+|+++|.
T Consensus 13 ~~~~l~~~l~-~d~iiv~d~G~~~~~~~~~~~~~~~-----~~~~-------------~~~~~GsmG~~lpaaiGa~la~ 73 (202)
T cd02006 13 VYEEMNKAFG-RDVRYVTTIGLSQIAGAQMLHVYKP-----RHWI-------------NCGQAGPLGWTVPAALGVAAAD 73 (202)
T ss_pred HHHHHHhhCC-CCeEEEECCcHHHHHHHHhcCcCCC-----CeEE-------------ccCCccchhhhhHHHHhHHhhC
Confidence 3444433333 4566778989 56676644431111 1111 1124589999999999999984
Q ss_pred HHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHH
Q 004968 209 DIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLR 288 (721)
Q Consensus 209 ~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r 288 (721)
++++|||++|||+|+ |+.++|.+|.++++|+++||.||+. +|.+.. .++......+
T Consensus 74 ----p~~~vv~i~GDG~f~--m~~~eL~Ta~~~~lpviivV~NN~~-------------yg~~~~-~q~~~~~~~~---- 129 (202)
T cd02006 74 ----PDRQVVALSGDYDFQ--FMIEELAVGAQHRIPYIHVLVNNAY-------------LGLIRQ-AQRAFDMDYQ---- 129 (202)
T ss_pred ----CCCeEEEEEeChHhh--ccHHHHHHHHHhCCCeEEEEEeCch-------------HHHHHH-HHHHhcCccc----
Confidence 589999999999997 9999999999999999999999986 343311 1110000000
Q ss_pred HHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEE
Q 004968 289 EVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL--GSMGPVLVHVVT 366 (721)
Q Consensus 289 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~--~~~~P~lI~v~T 366 (721)
...... .+.. .. ...-.++...++++||+++..+ .+.++|.++|+++.+. ..++|+||+|.+
T Consensus 130 -~~~~~~-~~~~---------~~--~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~al~~a~~~~~~~~~p~liev~i 193 (202)
T cd02006 130 -VNLAFE-NINS---------SE--LGGYGVDHVKVAEGLGCKAIRV---TKPEELAAAFEQAKKLMAEHRVPVVVEAIL 193 (202)
T ss_pred -cccccc-cccc---------cc--cCCCCCCHHHHHHHCCCEEEEE---CCHHHHHHHHHHHHHhcccCCCcEEEEEEe
Confidence 000000 0000 00 0000245577899999998866 7899999999998741 147899999998
Q ss_pred eccC
Q 004968 367 EENR 370 (721)
Q Consensus 367 ~kg~ 370 (721)
....
T Consensus 194 ~~~~ 197 (202)
T cd02006 194 ERVT 197 (202)
T ss_pred cccc
Confidence 6543
|
E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors. |
| >cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.8e-15 Score=150.18 Aligned_cols=173 Identities=17% Similarity=0.205 Sum_probs=111.0
Q ss_pred CCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEE
Q 004968 140 APVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIV 218 (721)
Q Consensus 140 ~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~Vv 218 (721)
.+++.++.|+| |+.|...++.-+ ..+++ ....+.|++|+++|+|+|+++|. ++++||
T Consensus 13 ~~~~ivv~d~G~~~~~~~~~~~~~-----~~~~~-------------~~~~~~gsmG~~lpaAiGa~la~----p~~~vv 70 (205)
T cd02003 13 GDDDVVINAAGSLPGDLHKLWRAR-----TPGGY-------------HLEYGYSCMGYEIAAGLGAKLAK----PDREVY 70 (205)
T ss_pred CCCCEEEECCCcchHHHHHhCCcC-----CCCcE-------------EcCCCcchhhhHHHHHHHHHHhC----CCCeEE
Confidence 36778888988 655655333210 00111 11124588999999999999884 589999
Q ss_pred EEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhc-
Q 004968 219 TVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKR- 297 (721)
Q Consensus 219 aviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~- 297 (721)
|++|||+|+ |...+|.+|.++++|+++||.||+. +|.+. .+++....+.+.. .....
T Consensus 71 ~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~-------------~g~~~-~~q~~~~~~~~~~------~~~~~~ 128 (205)
T cd02003 71 VLVGDGSYL--MLHSEIVTAVQEGLKIIIVLFDNHG-------------FGCIN-NLQESTGSGSFGT------EFRDRD 128 (205)
T ss_pred EEEccchhh--ccHHHHHHHHHcCCCCEEEEEECCc-------------cHHHH-HHHHHhcCccccc------hhcccc
Confidence 999999997 7778999999999999888888885 33321 1111100000000 00000
Q ss_pred cCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccC
Q 004968 298 IGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENR 370 (721)
Q Consensus 298 ~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~ 370 (721)
.+... . . .....++...++++||+++..+ +++++|.++|+++.+ .++|++|+|.+.+..
T Consensus 129 ~~~~~------~--~-~~~~~~d~~~~A~a~G~~~~~v---~~~~el~~al~~a~~--~~gp~lIeV~v~~~~ 187 (205)
T cd02003 129 QESGQ------L--D-GALLPVDFAANARSLGARVEKV---KTIEELKAALAKAKA--SDRTTVIVIKTDPKS 187 (205)
T ss_pred ccccc------c--c-CCCCCCCHHHHHHhCCCEEEEE---CCHHHHHHHHHHHHh--CCCCEEEEEEeeccc
Confidence 00000 0 0 0011245567899999998866 789999999999987 589999999997654
|
viciae IolD. IolD plays an important role in myo-inositol catabolism. |
| >cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.8e-15 Score=148.65 Aligned_cols=130 Identities=17% Similarity=0.265 Sum_probs=94.6
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|++|+++|+|+|+++|. ++++||+++|||+++ |..++|.+|+.+++|+++||.||+. ++
T Consensus 48 ~~g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~--~~~~eL~ta~~~~lpi~ivV~nN~~-------------~~ 108 (186)
T cd02015 48 GLGTMGFGLPAAIGAKVAR----PDKTVICIDGDGSFQ--MNIQELATAAQYNLPVKIVILNNGS-------------LG 108 (186)
T ss_pred CccchhchHHHHHHHHHhC----CCCeEEEEEcccHHh--ccHHHHHHHHHhCCCeEEEEEECCc-------------cH
Confidence 4588999999999999884 588999999999997 8889999999999999999999986 23
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~ 349 (721)
.+.. +++......+ . + ....-.++...++++||+++..+ ++.++|.++++
T Consensus 109 ~~~~-~~~~~~~~~~----------~---~-------------~~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~ 158 (186)
T cd02015 109 MVRQ-WQELFYEGRY----------S---H-------------TTLDSNPDFVKLAEAYGIKGLRV---EKPEELEAALK 158 (186)
T ss_pred HHHH-HHHHHcCCce----------e---e-------------ccCCCCCCHHHHHHHCCCceEEe---CCHHHHHHHHH
Confidence 2211 1000000000 0 0 00000134466889999998855 56899999999
Q ss_pred HHHhcCCCCCEEEEEEEeccC
Q 004968 350 EVASLGSMGPVLVHVVTEENR 370 (721)
Q Consensus 350 ~a~~~~~~~P~lI~v~T~kg~ 370 (721)
++.+ .++|++|+|.|.+..
T Consensus 159 ~a~~--~~~p~liev~~~~~~ 177 (186)
T cd02015 159 EALA--SDGPVLLDVLVDPEE 177 (186)
T ss_pred HHHh--CCCCEEEEEEeCCCc
Confidence 9987 589999999997543
|
AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD. |
| >cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation | Back alignment and domain information |
|---|
Probab=99.61 E-value=5e-15 Score=146.59 Aligned_cols=157 Identities=14% Similarity=0.173 Sum_probs=109.3
Q ss_pred CCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEE
Q 004968 141 PVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVT 219 (721)
Q Consensus 141 p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~Vva 219 (721)
+++.++.|.| |+.|....+.-++. +++ ....+.|.+|+++|+|+|+++|. ++++|||
T Consensus 14 ~~~ii~~d~G~~~~~~~~~~~~~~~-----~~~-------------~~~~~~g~mG~~lp~aiGa~la~----~~~~vv~ 71 (177)
T cd02010 14 DDDIVLLDVGAHKIWMARYYRTYAP-----NTC-------------LISNGLATMGVALPGAIGAKLVY----PDRKVVA 71 (177)
T ss_pred CCcEEEecCcHHHHHHHHhCCcCCC-----CCE-------------EeCCCChhhhhHHHHHHHHHHhC----CCCcEEE
Confidence 5666778988 56676655442211 011 11125588999999999999984 5899999
Q ss_pred EEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccC
Q 004968 220 VISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIG 299 (721)
Q Consensus 220 viGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g 299 (721)
++|||+++ |+..+|.+|.++++|+++||.||+. +|.+ +..++.. +. ...+
T Consensus 72 i~GDG~f~--m~~~eL~ta~~~~l~vi~vV~NN~~-------------~g~~-~~~~~~~----~~----------~~~~ 121 (177)
T cd02010 72 VSGDGGFM--MNSQELETAVRLKIPLVVLIWNDNG-------------YGLI-KWKQEKE----YG----------RDSG 121 (177)
T ss_pred EEcchHHH--hHHHHHHHHHHHCCCeEEEEEECCc-------------chHH-HHHHHHh----cC----------Cccc
Confidence 99999996 8899999999999999999888875 3332 1111100 00 0000
Q ss_pred cchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEec
Q 004968 300 RGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEE 368 (721)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~k 368 (721)
. .+-.++...+++++|+++..+ .+.++|.++++++.+ .++|++|++.+..
T Consensus 122 ~--------------~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~~a~~--~~~p~liev~~~~ 171 (177)
T cd02010 122 V--------------DFGNPDFVKYAESFGAKGYRI---ESADDLLPVLERALA--ADGVHVIDCPVDY 171 (177)
T ss_pred C--------------cCCCCCHHHHHHHCCCEEEEE---CCHHHHHHHHHHHHh--CCCCEEEEEEecc
Confidence 0 000134466889999998755 689999999999987 5899999999854
|
ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity. |
| >KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.5e-15 Score=153.46 Aligned_cols=224 Identities=17% Similarity=0.226 Sum_probs=143.6
Q ss_pred cCCCccccCCCCHHHHHHHHHHHH-----HHHHHhHhcCC--CCCCCcccH----HHHHHHHhcccCCCCcEEEecCCch
Q 004968 84 LVENPLRLKSLTIKELKQLAVEIR-----SELSSIVSKTE--KSLKSSLAA----VELTVALHHVFHAPVDKILWDVGEQ 152 (721)
Q Consensus 84 ~i~~p~~~~~~~~~~l~~la~eiR-----~~~~~~~~~~~--Gh~~sslg~----vel~~aL~~vf~~p~D~iv~d~GH~ 152 (721)
.|-.+.+..+++.+-..++.+.+- ..|++-..+.| -+.-.+.|. +...+|| .|+|.|.- -++
T Consensus 73 ~ii~~sqdp~~~ee~~~kmy~~M~~Ln~MD~IlYesQRQGRiSFYmT~~GEEa~higSAAAL-----~p~Dli~g--QYR 145 (432)
T KOG1182|consen 73 QIIDKSQDPQLSEEVVLKMYKDMTLLNIMDRILYESQRQGRISFYMTNFGEEAIHIGSAAAL-----EPQDLIYG--QYR 145 (432)
T ss_pred cccCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEEEeccchhhhhhhhhhhC-----Cccccccc--ccc
Confidence 455566666677665444444332 33444333332 133345554 4455677 78887653 222
Q ss_pred HHHHHHHhCchhhhHHHHhhCCCCCCCCCCC------C-CCCCcC-cCCCcchHHHHHHHHHHHHHcCCC-CeEEEEEcC
Q 004968 153 TYAHKILTGRRSLIHTLRKKDGISGYTSRSE------S-EYDPFN-AGHGCNSVSAGLGMAVARDIKGKR-ECIVTVISN 223 (721)
Q Consensus 153 ~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~e------s-~~d~~~-~G~~G~~is~A~G~AlA~~l~g~~-~~VvaviGD 223 (721)
--+.++++|..-+...-.=||..+.+-++.. | +.++|. +.++.++||.|+|.|.|.|+..++ +.+||++||
T Consensus 146 EaGVLlwRgftle~f~~qCyGn~~d~gkGrQMPvHyGs~elnf~tissplatqlpqAvGaaYa~k~~~~nnac~V~yfGd 225 (432)
T KOG1182|consen 146 EAGVLLWRGFTLEEFMNQCYGNKSDLGKGRQMPVHYGSKELNFVTISSPLATQLPQAVGAAYALKMRKKNNACAVTYFGD 225 (432)
T ss_pred cCceEEEcCccHHHHHHHhcCCccccccccccccccCccccceEEecchhhhccchhhhhhhhhhhcccCCeEEEEEecC
Confidence 2233444554222111122443333222211 1 223333 477899999999999999987766 789999999
Q ss_pred CCcccchHHHHHHHhhhcCCCEEEEEECCCCC-cCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcch
Q 004968 224 GTTMAGQAYEAMSNAGYLDSNMIVILNDSRHS-LHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGM 302 (721)
Q Consensus 224 Gal~~G~~~Ealn~A~~~~~plivIv~dN~~~-s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~ 302 (721)
|+.++|.++-++|+|+.++-|+||||-||++. |+||..+ |+ |+.+
T Consensus 226 G~aSEGD~HA~~NfAAtle~Pvif~CRNNG~AISTptseQ---------------------yr-------------~DGI 271 (432)
T KOG1182|consen 226 GAASEGDAHAAFNFAATLECPVIFFCRNNGWAISTPTSEQ---------------------YR-------------GDGI 271 (432)
T ss_pred CcccccchhhhhhHHHHhCCCEEEEEcCCCeeeccccHHH---------------------hc-------------CCce
Confidence 99999999999999999999999999999993 4444221 10 0000
Q ss_pred HHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEEec
Q 004968 303 HEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL--GSMGPVLVHVVTEE 368 (721)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~--~~~~P~lI~v~T~k 368 (721)
...-.++|++.+ .|||+|.-+++.+.++|+++ ...+|+||+..|.+
T Consensus 272 -------------------a~kG~aYGi~sI-RVDGnD~lAvYnA~k~ARe~av~e~rPvliEamtYR 319 (432)
T KOG1182|consen 272 -------------------AVKGPAYGIRSI-RVDGNDALAVYNAVKEAREMAVTEQRPVLIEAMTYR 319 (432)
T ss_pred -------------------EEeccccceEEE-EecCcchHHHHHHHHHHHHHHHhccCchhhhhhhhh
Confidence 112347899998 68999999999999888764 24689999999987
|
|
| >COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.8e-15 Score=169.03 Aligned_cols=158 Identities=22% Similarity=0.270 Sum_probs=112.8
Q ss_pred CCcE-EEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEE
Q 004968 141 PVDK-ILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIV 218 (721)
Q Consensus 141 p~D~-iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~Vv 218 (721)
|+|. |+.|+| |+.|+..++. +..+|++. .+ -+.|.||+++|+|+|+++|. +++.||
T Consensus 373 ~~daiv~~d~G~~~~w~a~~~~-----~~~p~~~~-~s------------~~~GtMG~glPaAIGAkla~----P~r~Vv 430 (550)
T COG0028 373 PDDAIVVTDVGQHQMWAARYFD-----FYRPRRFL-TS------------GGLGTMGFGLPAAIGAKLAA----PDRKVV 430 (550)
T ss_pred CCCeEEEeCCcHHHHHHHHhcc-----cCCCCcEE-cC------------CCCccccchHHHHHHHHhhC----CCCcEE
Confidence 4455 557999 8777763332 22222222 11 24599999999999999985 489999
Q ss_pred EEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhcc
Q 004968 219 TVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRI 298 (721)
Q Consensus 219 aviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~ 298 (721)
|++|||+|+ |+.++|.+|.++++|+++||.||+. +|.+. .+++......
T Consensus 431 ~i~GDG~F~--m~~qEL~Ta~r~~lpv~ivv~nN~~-------------~g~v~----------~~q~~~~~~~------ 479 (550)
T COG0028 431 AIAGDGGFM--MNGQELETAVRYGLPVKIVVLNNGG-------------YGMVR----------QWQELFYGGR------ 479 (550)
T ss_pred EEEcccHHh--ccHHHHHHHHHhCCCEEEEEEECCc-------------cccch----------HHHHHhcCCC------
Confidence 999999997 9999999999999999999999996 34331 1111111100
Q ss_pred CcchHHHHHHHHHHhhcccCCC-ccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEecc
Q 004968 299 GRGMHEWAAKVDEYARGMIGPQ-GSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEEN 369 (721)
Q Consensus 299 g~~~~~~~~~~~~~~~~~~~~~-~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg 369 (721)
+....+.+. +..++|+||+...++ .+.++|.++|+++.+ .++|++|++.+.+.
T Consensus 480 -------------~~~~~~~~~~f~klAea~G~~g~~v---~~~~el~~al~~al~--~~~p~lidv~id~~ 533 (550)
T COG0028 480 -------------YSGTDLGNPDFVKLAEAYGAKGIRV---ETPEELEEALEEALA--SDGPVLIDVVVDPE 533 (550)
T ss_pred -------------cceeecCCccHHHHHHHcCCeeEEe---CCHHHHHHHHHHHHh--CCCCEEEEEEecCc
Confidence 000011122 456889999999866 599999999999998 58999999999765
|
|
| >PRK06163 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-14 Score=145.58 Aligned_cols=123 Identities=15% Similarity=0.181 Sum_probs=92.8
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhc-CCCEEEEEECCCCCcCCCccCCCCcch
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYL-DSNMIVILNDSRHSLHPKIEESPKTSI 268 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~-~~plivIv~dN~~~s~~t~~~~~~~~~ 268 (721)
+.|.+|+++|+|+|+++|. ++++|||++|||+++ |..++|.+|+++ ++|+++||.||+..
T Consensus 55 ~~GsMG~glpaAiGaalA~----p~r~Vv~i~GDG~f~--m~~~eL~Ta~~~~~lpi~ivV~NN~~y------------- 115 (202)
T PRK06163 55 MLGSMGLAFPIALGVALAQ----PKRRVIALEGDGSLL--MQLGALGTIAALAPKNLTIIVMDNGVY------------- 115 (202)
T ss_pred eecccccHHHHHHHHHHhC----CCCeEEEEEcchHHH--HHHHHHHHHHHhcCCCeEEEEEcCCch-------------
Confidence 4588999999999999984 589999999999996 889999999877 58999999999752
Q ss_pred hhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCce-EEeccCCCCHHHHHHH
Q 004968 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLY-YIGPVDGHNIEDLISV 347 (721)
Q Consensus 269 g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~-~~g~vdGhd~~~l~~a 347 (721)
|.... +. .. ..-.++...++++||++ ...+ .+.++|..+
T Consensus 116 g~~~~-----~~-----------------~~---------------~~~~~Df~~lA~a~G~~~~~~v---~~~~el~~a 155 (202)
T PRK06163 116 QITGG-----QP-----------------TL---------------TSQTVDVVAIARGAGLENSHWA---ADEAHFEAL 155 (202)
T ss_pred hhcCC-----cc-----------------CC---------------CCCCCCHHHHHHHCCCceEEEe---CCHHHHHHH
Confidence 21000 00 00 00013345688999997 4434 689999999
Q ss_pred HHHHHhcCCCCCEEEEEEEeccCCCc
Q 004968 348 LQEVASLGSMGPVLVHVVTEENRRAE 373 (721)
Q Consensus 348 l~~a~~~~~~~P~lI~v~T~kg~G~~ 373 (721)
|+++.+ .++|++|+|++......+
T Consensus 156 l~~a~~--~~~p~lIeV~i~~~~~~~ 179 (202)
T PRK06163 156 VDQALS--GPGPSFIAVRIDDKPGVG 179 (202)
T ss_pred HHHHHh--CCCCEEEEEEecCCCCCC
Confidence 999987 589999999997655433
|
|
| >cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.8e-15 Score=144.99 Aligned_cols=127 Identities=20% Similarity=0.235 Sum_probs=93.9
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchH-HHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcch
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQA-YEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSI 268 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~-~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~ 268 (721)
+.|.+|+++|+|+|+++|. ++++||+++|||+++ |. +++|.+|+++++|+++||.||+...+-..++......
T Consensus 49 ~~g~mG~gl~~AiGa~la~----p~~~Vv~i~GDG~f~--~~g~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~~~~~~~~ 122 (178)
T cd02008 49 TCTCMGASIGVAIGMAKAS----EDKKVVAVIGDSTFF--HSGILGLINAVYNKANITVVILDNRTTAMTGGQPHPGTGK 122 (178)
T ss_pred ccccCccHHHHHhhHHhhC----CCCCEEEEecChHHh--hccHHHHHHHHHcCCCEEEEEECCcceeccCCCCCCCCcc
Confidence 4589999999999999995 488999999999995 55 7999999999999999999888532111000000000
Q ss_pred hhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHH
Q 004968 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (721)
Q Consensus 269 g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al 348 (721)
. . ......++...+++++|+++..+.++++++++.+++
T Consensus 123 ~--------------------~----------------------~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~al 160 (178)
T cd02008 123 T--------------------L----------------------TEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREEL 160 (178)
T ss_pred c--------------------c----------------------cCCCCccCHHHHHHHCCCCEEEecCccCHHHHHHHH
Confidence 0 0 000001234568899999999887999999999999
Q ss_pred HHHHhcCCCCCEEEEEEE
Q 004968 349 QEVASLGSMGPVLVHVVT 366 (721)
Q Consensus 349 ~~a~~~~~~~P~lI~v~T 366 (721)
+++++ .++|++|+++.
T Consensus 161 ~~a~~--~~gp~lI~v~~ 176 (178)
T cd02008 161 KEALA--VPGVSVIIAKR 176 (178)
T ss_pred HHHHh--CCCCEEEEEeC
Confidence 99987 58999999875
|
IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA. |
| >cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.3e-14 Score=143.09 Aligned_cols=122 Identities=18% Similarity=0.299 Sum_probs=93.8
Q ss_pred cCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCC-CEEEEEECCCCCcCCCccCCCCcc
Q 004968 189 FNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDS-NMIVILNDSRHSLHPKIEESPKTS 267 (721)
Q Consensus 189 ~~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~-plivIv~dN~~~s~~t~~~~~~~~ 267 (721)
+..|++|+++|+|+|+++|. ++++||+++|||+|+ |..++|.+++++++ |+++||.||+..++.
T Consensus 45 ~~~g~mG~~lpaAiGaala~----p~~~Vv~i~GDG~f~--m~~~eL~ta~~~~l~~i~ivV~NN~~yg~~--------- 109 (188)
T cd03371 45 LTVGSMGHASQIALGIALAR----PDRKVVCIDGDGAAL--MHMGGLATIGGLAPANLIHIVLNNGAHDSV--------- 109 (188)
T ss_pred eecCccccHHHHHHHHHHhC----CCCcEEEEeCCcHHH--hhccHHHHHHHcCCCCcEEEEEeCchhhcc---------
Confidence 45699999999999999985 488999999999997 88899999999985 798888888853110
Q ss_pred hhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHH
Q 004968 268 INALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISV 347 (721)
Q Consensus 268 ~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~a 347 (721)
+.. . ..+ ..++...+++++|+.+...+ ++.++|.++
T Consensus 110 -~~~-------~-----------------~~~-----------------~~~d~~~~A~a~G~~~~~~v--~~~~el~~a 145 (188)
T cd03371 110 -GGQ-------P-----------------TVS-----------------FDVSLPAIAKACGYRAVYEV--PSLEELVAA 145 (188)
T ss_pred -CCc-------C-----------------CCC-----------------CCCCHHHHHHHcCCceEEec--CCHHHHHHH
Confidence 000 0 000 01233567899999874334 589999999
Q ss_pred HHHHHhcCCCCCEEEEEEEeccCC
Q 004968 348 LQEVASLGSMGPVLVHVVTEENRR 371 (721)
Q Consensus 348 l~~a~~~~~~~P~lI~v~T~kg~G 371 (721)
++++.+ .++|++|++.+.++++
T Consensus 146 l~~a~~--~~~p~lIev~~~~~~~ 167 (188)
T cd03371 146 LAKALA--ADGPAFIEVKVRPGSR 167 (188)
T ss_pred HHHHHh--CCCCEEEEEEecCCCC
Confidence 999987 5889999999988776
|
PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors. |
| >cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC) | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.8e-14 Score=141.22 Aligned_cols=162 Identities=19% Similarity=0.161 Sum_probs=104.5
Q ss_pred CCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEE
Q 004968 141 PVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVT 219 (721)
Q Consensus 141 p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~Vva 219 (721)
+++.++.|.| |+.|...++..+. |. +.....+ |.+|+++|+|+|+++|. ++++|||
T Consensus 16 ~~~~iv~d~g~~~~~~~~~~~~~~---------------~~---~~~~~~~-g~mG~~lp~aiGaala~----~~~~vv~ 72 (178)
T cd02002 16 EDAIIVDEAVTNGLPLRDQLPLTR---------------PG---SYFTLRG-GGLGWGLPAAVGAALAN----PDRKVVA 72 (178)
T ss_pred CCeEEEecCCcccHHHHHhcccCC---------------CC---CeeccCC-ccccchHHHHHHHHhcC----CCCeEEE
Confidence 4567788988 6556664443211 00 1111135 99999999999999985 4889999
Q ss_pred EEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccC
Q 004968 220 VISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIG 299 (721)
Q Consensus 220 viGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g 299 (721)
++|||+++ |..++|++|+.+++|+++||.||+. ++.. +.+++....... .. ....+
T Consensus 73 i~GDG~f~--~~~~el~ta~~~~~p~~~iV~nN~~-------------~~~~-~~~~~~~~~~~~----~~----~~~~~ 128 (178)
T cd02002 73 IIGDGSFM--YTIQALWTAARYGLPVTVVILNNRG-------------YGAL-RSFLKRVGPEGP----GE----NAPDG 128 (178)
T ss_pred EEcCchhh--ccHHHHHHHHHhCCCeEEEEEcCcc-------------HHHH-HHHHHHHcCCCc----cc----ccccc
Confidence 99999997 5568999999999999999999984 2221 111100000000 00 00000
Q ss_pred cchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEE
Q 004968 300 RGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVT 366 (721)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T 366 (721)
.. ...-.++...+++++|+++..+ ++.+++.++++++.+ .++|++||+++
T Consensus 129 ~~------------~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~~a~~--~~~p~vi~v~v 178 (178)
T cd02002 129 LD------------LLDPGIDFAAIAKAFGVEAERV---ETPEELDEALREALA--EGGPALIEVVV 178 (178)
T ss_pred cc------------cCCCCCCHHHHHHHcCCceEEe---CCHHHHHHHHHHHHh--CCCCEEEEEEC
Confidence 00 0000133456889999998754 459999999999987 58999999874
|
P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors. |
| >cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.1e-14 Score=142.25 Aligned_cols=167 Identities=16% Similarity=0.188 Sum_probs=109.2
Q ss_pred HHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHH
Q 004968 130 LTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVAR 208 (721)
Q Consensus 130 l~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~ 208 (721)
+..+|....+ +++.++.|.| |+.++...++-++. +++. ...+.|.+|+++|+|+|+++|.
T Consensus 7 ~~~~l~~~~~-~~~ii~~d~g~~~~~~~~~~~~~~~-----~~~~-------------~~~~~g~mG~~~~~aiGa~~a~ 67 (178)
T cd02014 7 VAAELNKRAP-DDAIFTIDVGNVTVWAARHLRMNGK-----QRFI-------------LSGLLATMGNGLPGAIAAKLAY 67 (178)
T ss_pred HHHHHHhHCC-CCeEEEEcCcHHHHHHHHhcccCCC-----CcEE-------------cCCCCchhhhHHHHHHHHHHhC
Confidence 3344433332 4455668998 66666644432110 1111 1124488999999999999884
Q ss_pred HHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHH
Q 004968 209 DIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLR 288 (721)
Q Consensus 209 ~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r 288 (721)
++++||+++|||+++ +...+|.+|..+++|+++||.||+. ++.+ +..++....+.
T Consensus 68 ----~~~~vv~i~GDG~f~--~~~~el~t~~~~~lp~~~iv~NN~~-------------~~~~-~~~~~~~~~~~----- 122 (178)
T cd02014 68 ----PDRQVIALSGDGGFA--MLMGDLITAVKYNLPVIVVVFNNSD-------------LGFI-KWEQEVMGQPE----- 122 (178)
T ss_pred ----CCCcEEEEEcchHHH--hhHHHHHHHHHhCCCcEEEEEECCc-------------hhHH-HHHHHHhcCCc-----
Confidence 588999999999997 6677899999999999999999985 2221 10000000000
Q ss_pred HHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEec
Q 004968 289 EVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEE 368 (721)
Q Consensus 289 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~k 368 (721)
.+. ..-.++...+++++|+++... .+.+++.++++++.+ .++|++|++.|..
T Consensus 123 ---------~~~--------------~~~~~d~~~la~a~G~~~~~v---~~~~el~~~l~~a~~--~~~p~liev~~~~ 174 (178)
T cd02014 123 ---------FGV--------------DLPNPDFAKIAEAMGIKGIRV---EDPDELEAALDEALA--ADGPVVIDVVTDP 174 (178)
T ss_pred ---------eec--------------cCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHh--CCCCEEEEEEeCC
Confidence 000 000123456889999998754 578999999999987 5899999999854
|
POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors. |
| >cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase) | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.2e-14 Score=138.11 Aligned_cols=117 Identities=19% Similarity=0.212 Sum_probs=90.3
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCCcch
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSI 268 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~ 268 (721)
..|++|+++|+|+|+++|. +++|||++|||+|+ |..++|.+++.++ +|+++||.||+...
T Consensus 40 ~~gsmG~~lp~AiGa~~a~-----~~~Vv~i~GDG~f~--m~~~el~t~~~~~~~~i~~vV~nN~~~g------------ 100 (157)
T cd02001 40 MLGSMGLAGSIGLGLALGL-----SRKVIVVDGDGSLL--MNPGVLLTAGEFTPLNLILVVLDNRAYG------------ 100 (157)
T ss_pred eecchhhHHHHHHHHHhcC-----CCcEEEEECchHHH--hcccHHHHHHHhcCCCEEEEEEeCcccc------------
Confidence 3588999999999999984 28899999999996 7888999999985 99999998887521
Q ss_pred hhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHH
Q 004968 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (721)
Q Consensus 269 g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al 348 (721)
.... + + .. ...++...+++++|+++..+ +++++|.+++
T Consensus 101 -~~~~-----~--~---------------~~----------------~~~~d~~~lA~a~G~~~~~v---~~~~el~~al 138 (157)
T cd02001 101 -STGG-----Q--P---------------TP----------------SSNVNLEAWAAACGYLVLSA---PLLGGLGSEF 138 (157)
T ss_pred -ccCC-----c--C---------------CC----------------CCCCCHHHHHHHCCCceEEc---CCHHHHHHHH
Confidence 1100 0 0 00 00133456788999998855 7899999999
Q ss_pred HHHHhcCCCCCEEEEEEEecc
Q 004968 349 QEVASLGSMGPVLVHVVTEEN 369 (721)
Q Consensus 349 ~~a~~~~~~~P~lI~v~T~kg 369 (721)
+++.+ .++|++|++.+.++
T Consensus 139 ~~a~~--~~gp~vi~v~i~~~ 157 (157)
T cd02001 139 AGLLA--TTGPTLLHAPIAPG 157 (157)
T ss_pred HHHHh--CCCCEEEEEEecCC
Confidence 99987 58999999999664
|
Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors. |
| >cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE) | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.3e-14 Score=138.98 Aligned_cols=120 Identities=17% Similarity=0.243 Sum_probs=89.3
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCCcch
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSI 268 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~ 268 (721)
..|++|+++|+|+|+|+|.+ ++|||++|||+++ |..+++.+|+.++ .|+++||.||+..++...+. .
T Consensus 40 ~~g~mG~~lp~AiGaala~~-----~~vv~i~GDG~f~--m~~~el~ta~~~~~~~l~vvV~NN~~~~~~~~~~----~- 107 (179)
T cd03372 40 MLGSMGLASSIGLGLALAQP-----RKVIVIDGDGSLL--MNLGALATIAAEKPKNLIIVVLDNGAYGSTGNQP----T- 107 (179)
T ss_pred cccchhhHHHHHHHHHhcCC-----CcEEEEECCcHHH--hCHHHHHHHHHcCCCCEEEEEEcCccccccCCCC----C-
Confidence 35899999999999999853 7899999999996 7778999999998 57888876666422100000 0
Q ss_pred hhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHH
Q 004968 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (721)
Q Consensus 269 g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al 348 (721)
. .. ..++...++++||+.+. .++| +.+++.+++
T Consensus 108 ~----------------------------~~-----------------~~~d~~~lA~a~G~~~~-~v~~-~~~el~~al 140 (179)
T cd03372 108 H----------------------------AG-----------------KKTDLEAVAKACGLDNV-ATVA-SEEAFEKAV 140 (179)
T ss_pred C----------------------------CC-----------------CCCCHHHHHHHcCCCeE-EecC-CHHHHHHHH
Confidence 0 00 01233557889999997 4555 899999999
Q ss_pred HHHHhcCCCCCEEEEEEEeccCCC
Q 004968 349 QEVASLGSMGPVLVHVVTEENRRA 372 (721)
Q Consensus 349 ~~a~~~~~~~P~lI~v~T~kg~G~ 372 (721)
++++ ++|++|++.|.++.+.
T Consensus 141 ~~a~----~gp~lIev~~~~~~~~ 160 (179)
T cd03372 141 EQAL----DGPSFIHVKIKPGNTD 160 (179)
T ss_pred HHhc----CCCEEEEEEEcCCCCC
Confidence 9886 5799999999887763
|
M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors. |
| >cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD) | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.3e-15 Score=144.42 Aligned_cols=126 Identities=17% Similarity=0.239 Sum_probs=91.6
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
|.|.+|+++|+|+|+++|. +++|||++|||+++ |+.++|.+|.++++|+++||.||+.. |
T Consensus 49 g~g~mG~~l~~aiGa~la~-----~~~Vv~i~GDGsf~--m~~~eL~ta~~~~l~v~ivVlNN~~~-------------g 108 (175)
T cd02009 49 GASGIDGTLSTALGIALAT-----DKPTVLLTGDLSFL--HDLNGLLLGKQEPLNLTIVVINNNGG-------------G 108 (175)
T ss_pred CccchhhHHHHHHHHHhcC-----CCCEEEEEehHHHH--HhHHHHHhccccCCCeEEEEEECCCC-------------c
Confidence 4588999999999999983 78899999999996 88999999999999999999999852 1
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~ 349 (721)
.. ++++.......|.. ..... ..++...++|+||+++..+ ++.++|.++|+
T Consensus 109 ~~-~~~~~~~~~~~~~~------------------------~~~~~-~~~d~~~lA~a~G~~~~~v---~~~~el~~al~ 159 (175)
T cd02009 109 IF-SLLPQASFEDEFER------------------------LFGTP-QGLDFEHLAKAYGLEYRRV---SSLDELEQALE 159 (175)
T ss_pred hh-eeccCCcccchhhh------------------------hhcCC-CCCCHHHHHHHcCCCeeeC---CCHHHHHHHHH
Confidence 11 00000000000000 00000 1234567899999999866 68999999999
Q ss_pred HHHhcCCCCCEEEEEEE
Q 004968 350 EVASLGSMGPVLVHVVT 366 (721)
Q Consensus 350 ~a~~~~~~~P~lI~v~T 366 (721)
++.+ .++|++|++.+
T Consensus 160 ~a~~--~~~p~lIev~v 174 (175)
T cd02009 160 SALA--QDGPHVIEVKT 174 (175)
T ss_pred HHHh--CCCCEEEEEeC
Confidence 9987 58999999986
|
SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity. |
| >TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.8e-13 Score=135.80 Aligned_cols=118 Identities=18% Similarity=0.264 Sum_probs=89.6
Q ss_pred cCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 191 AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 191 ~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
.|++|+++|+|+|+++|. +++|||++|||+|+ |..++|.+|+.++ +|+++||.||+..+
T Consensus 41 ~gsmG~~lpaAiGa~la~-----~~~Vv~i~GDG~f~--m~~~el~ta~~~~~~pv~~vV~NN~~yg------------- 100 (181)
T TIGR03846 41 LGSMGLASSIGLGLALAT-----DRTVIVIDGDGSLL--MNLGVLPTIAAESPKNLILVILDNGAYG------------- 100 (181)
T ss_pred ccccccHHHHHHHHHHcC-----CCcEEEEEcchHHH--hhhhHHHHHHHhCCCCeEEEEEeCCccc-------------
Confidence 588999999999999983 78999999999996 7779999999999 59999999998521
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~ 349 (721)
.+.. +. ... .-.++...+++++|+.+...+ ++.++|.++|+
T Consensus 101 ~~~~-----q~-----------------~~~---------------~~~~d~~~lA~a~G~~~~~~v--~~~~~l~~al~ 141 (181)
T TIGR03846 101 STGN-----QP-----------------TPA---------------SRRTDLELVAKAAGIRNVEKV--ADEEELRDALK 141 (181)
T ss_pred cccC-----cC-----------------CCC---------------CCCCCHHHHHHHCCCCeEEEe--CCHHHHHHHHH
Confidence 1100 00 000 001234567899999987522 78999999997
Q ss_pred HHHhcCCCCCEEEEEEEeccC
Q 004968 350 EVASLGSMGPVLVHVVTEENR 370 (721)
Q Consensus 350 ~a~~~~~~~P~lI~v~T~kg~ 370 (721)
+.+ .++|.+|++.+.++.
T Consensus 142 -a~~--~~~p~li~v~~~~~~ 159 (181)
T TIGR03846 142 -ALA--MKGPTFIHVKVKPGN 159 (181)
T ss_pred -HHc--CCCCEEEEEEeCCCC
Confidence 765 589999999997654
|
Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363). |
| >cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.4e-14 Score=138.27 Aligned_cols=124 Identities=17% Similarity=0.129 Sum_probs=88.7
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|.+|+++|+|+|+++|. ++++||+++|||+|+ |...+|.+|+++++|+++||.||+...
T Consensus 48 ~~g~mG~~l~~aiGaala~----~~~~vv~i~GDG~f~--~~~~el~ta~~~~~p~~ivV~nN~~~~------------- 108 (183)
T cd02005 48 LWGSIGYSVPAALGAALAA----PDRRVILLVGDGSFQ--MTVQELSTMIRYGLNPIIFLINNDGYT------------- 108 (183)
T ss_pred chhhHhhhHHHHHHHHHhC----CCCeEEEEECCchhh--ccHHHHHHHHHhCCCCEEEEEECCCcE-------------
Confidence 4589999999999999985 478999999999996 677779999999988888777777521
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeC----ceEEeccCCCCHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELG----LYYIGPVDGHNIEDLI 345 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G----~~~~g~vdGhd~~~l~ 345 (721)
.+. .+++.. ..+ .....++...+++++| +++..+ ++.+++.
T Consensus 109 ~~~-~~~~~~--~~~-----------------------------~~~~~~d~~~ia~a~G~~~~~~~~~v---~~~~el~ 153 (183)
T cd02005 109 IER-AIHGPE--ASY-----------------------------NDIANWNYTKLPEVFGGGGGGLSFRV---KTEGELD 153 (183)
T ss_pred EEE-EeccCC--cCc-----------------------------ccCCCCCHHHHHHHhCCCccccEEEe---cCHHHHH
Confidence 110 000000 000 0000133456788898 677655 7899999
Q ss_pred HHHHHHHhcCCCCCEEEEEEEec
Q 004968 346 SVLQEVASLGSMGPVLVHVVTEE 368 (721)
Q Consensus 346 ~al~~a~~~~~~~P~lI~v~T~k 368 (721)
++|+++.+. .++|+|||+.|.+
T Consensus 154 ~al~~a~~~-~~~p~liev~~~~ 175 (183)
T cd02005 154 EALKDALFN-RDKLSLIEVILPK 175 (183)
T ss_pred HHHHHHHhc-CCCcEEEEEEcCc
Confidence 999998862 3789999999954
|
PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors. |
| >PRK06154 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-13 Score=159.14 Aligned_cols=175 Identities=14% Similarity=0.103 Sum_probs=115.5
Q ss_pred ccHHHHHHHHhcccCCCCcEEE-ecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKIL-WDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGL 202 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv-~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~ 202 (721)
+....+...|...+. |+|.|+ .|.| |+.|...++.-.. ++++. ...+.|++|+++|+|+
T Consensus 381 l~p~~~~~~l~~~l~-~~d~iv~~D~G~~~~~~~~~~~~~~-----p~~~~-------------~~~~~gsmG~glpaai 441 (565)
T PRK06154 381 INPYRVVWELQHAVD-IKTVIITHDAGSPRDQLSPFYVASR-----PGSYL-------------GWGKTTQLGYGLGLAM 441 (565)
T ss_pred cCHHHHHHHHHHhcC-CCCEEEEECCcccHHHHHHhCCCCC-----CCeEE-------------ccCCCcccccHHHHHH
Confidence 333344444444333 456665 5999 6667664432110 11111 0113488999999999
Q ss_pred HHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhch
Q 004968 203 GMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSK 282 (721)
Q Consensus 203 G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~ 282 (721)
|+++|. ++++|||++|||+|+ |+.++|.+|+++++|+++||.||+.. |.+..
T Consensus 442 Ga~la~----p~r~Vv~i~GDG~f~--m~~~EL~Ta~r~~lpi~~vV~NN~~y-------------g~~~~--------- 493 (565)
T PRK06154 442 GAKLAR----PDALVINLWGDAAFG--MTGMDFETAVRERIPILTILLNNFSM-------------GGYDK--------- 493 (565)
T ss_pred HHHHhC----CCCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEECCcc-------------ceeeh---------
Confidence 999984 589999999999996 99999999999999999999999852 22211
Q ss_pred HHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhc-CCCCCEE
Q 004968 283 SFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL-GSMGPVL 361 (721)
Q Consensus 283 ~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~-~~~~P~l 361 (721)
+++... . ...+ ....+++..++|+||.++..+ .+.++|.++|+++.+. ..++|+|
T Consensus 494 -~~~~~~-~----~~~~---------------~~~~~df~~lA~a~G~~g~~V---~~~~el~~al~~a~~~~~~~~p~l 549 (565)
T PRK06154 494 -VMPVST-T----KYRA---------------TDISGDYAAIARALGGYGERV---EDPEMLVPALLRALRKVKEGTPAL 549 (565)
T ss_pred -hhhhhc-C----cccc---------------cCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHhhccCCCeEE
Confidence 000000 0 0000 001235567899999999866 7899999999998741 1478999
Q ss_pred EEEEEeccC
Q 004968 362 VHVVTEENR 370 (721)
Q Consensus 362 I~v~T~kg~ 370 (721)
|+|.+.+..
T Consensus 550 Iev~v~~~~ 558 (565)
T PRK06154 550 LEVITSEET 558 (565)
T ss_pred EEEEeChHH
Confidence 999996543
|
|
| >TIGR01504 glyox_carbo_lig glyoxylate carboligase | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.2e-13 Score=159.03 Aligned_cols=185 Identities=16% Similarity=0.148 Sum_probs=116.9
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+...|...+ .+++.|+.|.| |+.|....+.-. ..+++- ...+.|+||+++|+|+|
T Consensus 369 l~p~~~~~~l~~~l-~~d~ivv~D~G~~~~~~~~~~~~~-----~p~~~~-------------~~~~~gsmG~glpaaiG 429 (588)
T TIGR01504 369 VKPQRVYEEMNKAF-GRDVCYVTTIGLSQIAGAQMLHVY-----KPRHWI-------------NCGQAGPLGWTIPAALG 429 (588)
T ss_pred cCHHHHHHHHHHhC-CCCCEEEECCcHHHHHHHHhcccc-----CCCcEE-------------eCCccccccchHhHHHh
Confidence 44444444454443 35677788999 555665443211 111111 00134889999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+++|. ++++||+++|||+|+ |+.++|.+|.++++|+++||.||+. +|.+.. .++....+.
T Consensus 430 a~lA~----pdr~Vv~i~GDG~f~--m~~~EL~Ta~r~~lpvv~iV~NN~~-------------yg~i~~-~q~~~~~~~ 489 (588)
T TIGR01504 430 VCAAD----PKRNVVALSGDYDFQ--FMIEELAVGAQHNIPYIHVLVNNAY-------------LGLIRQ-AQRAFDMDY 489 (588)
T ss_pred hhhhC----CCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCCc-------------hHHHHH-HHHHhcccc
Confidence 99984 589999999999997 8899999999999999999999985 444321 111000000
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhc--CCCCCEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL--GSMGPVL 361 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~--~~~~P~l 361 (721)
+ .... ...+... -.+...++...++|+||.++..+ ++.++|.++|+++.+. ..++|+|
T Consensus 490 ~-----~~~~-~~~~~~~-----------~~~~~~~d~~~lA~a~G~~~~~V---~~~~eL~~al~~a~~~~~~~~~p~l 549 (588)
T TIGR01504 490 C-----VQLA-FENINSS-----------EVNGYGVDHVKVAEGLGCKAIRV---FKPEEIAPAFEQAKALMAEHRVPVV 549 (588)
T ss_pred c-----ceee-ccccccc-----------cccCCCCCHHHHHHHCCCEEEEE---CCHHHHHHHHHHHHhhcccCCCcEE
Confidence 0 0000 0000000 00001245567899999998866 7899999999998741 1489999
Q ss_pred EEEEEec
Q 004968 362 VHVVTEE 368 (721)
Q Consensus 362 I~v~T~k 368 (721)
|+|.+.+
T Consensus 550 IeV~i~~ 556 (588)
T TIGR01504 550 VEVILER 556 (588)
T ss_pred EEEEecc
Confidence 9999954
|
Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism. |
| >cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-13 Score=142.57 Aligned_cols=140 Identities=19% Similarity=0.273 Sum_probs=93.7
Q ss_pred cCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhh
Q 004968 191 AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINA 270 (721)
Q Consensus 191 ~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~ 270 (721)
.|++|+++|+|+|++++ .++++|||++|||++. .|..++|.+|++++.|+++||.||+..++...+.......+.
T Consensus 61 ~gsmG~GlpaAiGa~~a----~p~r~VV~i~GDG~~~-~m~~~eL~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~~~~~ 135 (235)
T cd03376 61 AAAVASGIEAALKALGR----GKDITVVAFAGDGGTA-DIGFQALSGAAERGHDILYICYDNEAYMNTGIQRSGSTPYGA 135 (235)
T ss_pred HHHHHHHHHHHHHHhcc----CCCCeEEEEEcCchHH-hhHHHHHHHHHHcCCCeEEEEECCcccccCCCCCCCCCCCCC
Confidence 36888888888887655 5689999999999951 388899999999999999999999964321111111100110
Q ss_pred hhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHH
Q 004968 271 LSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQE 350 (721)
Q Consensus 271 l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~ 350 (721)
... . ...+..+. -.....++...+++++|+.++..+..+++++|.+++++
T Consensus 136 ~~~------~---------------~~~g~~~~---------~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~ 185 (235)
T cd03376 136 WTT------T---------------TPVGKVSF---------GKKQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKVKK 185 (235)
T ss_pred Eee------c---------------CCCCcccc---------ccccccCCHHHHHHHcCCcEEEEEcCCCHHHHHHHHHH
Confidence 000 0 00000000 00001134467899999998765566899999999999
Q ss_pred HHhcCCCCCEEEEEEEe
Q 004968 351 VASLGSMGPVLVHVVTE 367 (721)
Q Consensus 351 a~~~~~~~P~lI~v~T~ 367 (721)
+.+ .++|+||++.+.
T Consensus 186 a~~--~~gP~lIev~~~ 200 (235)
T cd03376 186 ALS--IEGPAYIHILSP 200 (235)
T ss_pred HHh--CCCCEEEEEECC
Confidence 988 589999999874
|
PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity. |
| >PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.8e-11 Score=140.47 Aligned_cols=431 Identities=16% Similarity=0.117 Sum_probs=260.2
Q ss_pred CCCcchHHHHHHHHHHHH-HcCC-----CCeEEEEEcCCCc-ccchHHHHHHHhhhcCCC---EEEEEECCCCCcCCCcc
Q 004968 192 GHGCNSVSAGLGMAVARD-IKGK-----RECIVTVISNGTT-MAGQAYEAMSNAGYLDSN---MIVILNDSRHSLHPKIE 261 (721)
Q Consensus 192 G~~G~~is~A~G~AlA~~-l~g~-----~~~VvaviGDGal-~~G~~~Ealn~A~~~~~p---livIv~dN~~~s~~t~~ 261 (721)
.|+=.-=|..-|++-|.. +.+. ..-.|++=||++| .+|+++|.||++..++.+ .|.||.||++ ...|.-
T Consensus 619 SHLEavdpVleGivRakQd~l~~g~~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNqi-GftT~p 697 (1228)
T PRK12270 619 SHLEAVDPVLEGIVRAKQDRLDKGEEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQV-GFTTAP 697 (1228)
T ss_pred hhhhhcchHhhhhhhhhhhhhcccccCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecCc-ccccCc
Confidence 344444556778887753 2221 2345677899997 489999999999999988 9999999997 222211
Q ss_pred CCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCH
Q 004968 262 ESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNI 341 (721)
Q Consensus 262 ~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~ 341 (721)
..+ .| ..|. ..+++.++...+ .|||+|+
T Consensus 698 -----~~~-Rs---------s~y~------------------------------------td~ak~~~~Pif-hVNGdDp 725 (1228)
T PRK12270 698 -----ESS-RS---------SEYA------------------------------------TDVAKMIQAPIF-HVNGDDP 725 (1228)
T ss_pred -----ccc-cc---------chhh------------------------------------HHHHhhcCCCEE-eECCCCH
Confidence 000 00 0010 123344555665 7899999
Q ss_pred HHHHHHHHHHHhc--CCCCCEEEEEEEeccCCCcccccc-c-ccccccccC-----------------------------
Q 004968 342 EDLISVLQEVASL--GSMGPVLVHVVTEENRRAEDTQKS-E-AIEKQQEGA----------------------------- 388 (721)
Q Consensus 342 ~~l~~al~~a~~~--~~~~P~lI~v~T~kg~G~~~ae~~-~-~~~~~Hg~~----------------------------- 388 (721)
+++.++.+.|.++ ..++|++|++.+++-+|+--.+.. . .+.-|.-+.
T Consensus 726 eAv~~va~lA~~yr~~f~~dVvIdlvcYRrrGHNEgDdPSmtqP~mY~~i~~~~svrk~yte~Ligrgdit~ee~e~~l~ 805 (1228)
T PRK12270 726 EAVVRVARLAFEYRQRFHKDVVIDLVCYRRRGHNEGDDPSMTQPLMYDLIDAKRSVRKLYTEALIGRGDITVEEAEQALR 805 (1228)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEEEEeecCCCCCCCcccCCchhhhhhhhcchHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 9999988777543 247899999999999987322110 0 011111110
Q ss_pred --------CC----CCCC-----CC--------C-----CCcccHHH---------------------------------
Q 004968 389 --------SD----SNSL-----PF--------G-----NYSRTYDD--------------------------------- 405 (721)
Q Consensus 389 --------~f----~~g~-----~~--------~-----~~~~~~~~--------------------------------- 405 (721)
-| +..+ +. . +-.....+
T Consensus 806 dy~~~Le~~f~e~re~~~~~~~~~~~~~~~~~~~~~~~Tav~~~~l~~i~da~~~~PegFt~Hpkl~~~l~~R~~m~~~g 885 (1228)
T PRK12270 806 DYQGQLERVFNEVREAEKKPPEPPESVESDQGPPAGVDTAVSAEVLERIGDAHVNLPEGFTVHPKLKPLLEKRREMAREG 885 (1228)
T ss_pred HHHHHHHHHHHHHHhcccCCCCCCCCccccccCCCCCCCCCCHHHHHHHHHHhccCCCCCccChhhHHHHHHHHHHHhcC
Confidence 01 0000 00 0 00000001
Q ss_pred ----HHHHH--HHHHHHcCCCeEEEecCCCCccC------------------hHHHHHhCCC--cEeeccccHHHHHHHH
Q 004968 406 ----CFIEA--LVMEAEKDKDIVVVHAGMEMDLS------------------LQLFQEKFPE--RYFDVGMAEQHAVTFS 459 (721)
Q Consensus 406 ----~~~~~--L~~~~~~d~~iv~i~ad~~~~~~------------------l~~f~~~fp~--R~~d~GIaE~~~v~~A 459 (721)
+|++. +-.++.+...|-..+.|...||= |..|... .. -++|..++|-+++||=
T Consensus 886 ~iDWa~gEllAfGsLl~eG~~VRL~GQDsrRGTF~QRHavl~D~~tg~e~~Pl~~l~~~-q~~f~vydS~LSEyAa~GFE 964 (1228)
T PRK12270 886 GIDWAFGELLAFGSLLLEGTPVRLSGQDSRRGTFSQRHAVLIDRETGEEYTPLQNLSDD-QGKFLVYDSLLSEYAAMGFE 964 (1228)
T ss_pred CccHHHHHHHHHHHHHhcCceeeeeccccCCcceeeeeEEEecCCCCcccCcHhhcCCC-cceEEEecchhhHHHhhccc
Confidence 12222 23344455556666666654431 1122111 13 4579999999999999
Q ss_pred HHHHhCCCe--eEEEe-cHhhH---HHHHHHHHHHhh---cCCcceEEEEcCCCCcCCCCCCcCcHHHHHH--HccCCCc
Q 004968 460 AGLACGGLK--PFCII-PSAFL---QRAYDQVVNDVD---QQRLPVRFVITSAGLVGSDGPTQCGAFDITF--MSCLPNM 528 (721)
Q Consensus 460 aGlA~~G~~--p~~~t-ys~Fl---~ra~dqi~~~~a---~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~--~~~iPnl 528 (721)
.|.+.+.-- .+.+- |.+|. |-.+|+.+...- .|.-.|++...| |.-| .||-|+..---.| +..-.||
T Consensus 965 YGYSv~~pdaLVlWEAQFGDF~NGAQtiIDefIss~e~KWgQ~S~vvlLLPH-GyEG-QGPdHSSaRiERfLqlcAe~nm 1042 (1228)
T PRK12270 965 YGYSVERPDALVLWEAQFGDFANGAQTIIDEFISSGEAKWGQRSGVVLLLPH-GYEG-QGPDHSSARIERFLQLCAEGNM 1042 (1228)
T ss_pred eeeecCCCcceeeehhhhcccccchHHHHHHHHhhhHhhhccccceEEEccC-CcCC-CCCCcchHHHHHHHHhhccCCe
Confidence 999999644 34443 88886 788898765532 256778888887 5555 4899996432233 4445799
Q ss_pred EEEeeCCHHHHHHHHHH-HHHhCCCCEEEEecCCCcccccCCCCCCcceecCceE-EEEe-----C--CcEEEEEechhh
Q 004968 529 IVMAPSDEDELVDMVAT-VASIDDRPVCFRYPRGAIVRTDLPGYRGIPIEIGKGK-VLVE-----G--KDVALLGYGAMV 599 (721)
Q Consensus 529 ~V~~Psd~~E~~~~l~~-a~~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~gk~~-vl~e-----G--~dv~Iva~Gs~v 599 (721)
+|..|++|.....+|+. |+....+|.+++.||+...... ....-..+.-|+++ ||.+ + -+=+|+|+|-..
T Consensus 1043 ~Va~psTPA~yFHLLRrqa~~~~~rPLvVfTPKSmLR~Ka-A~S~vedFT~g~F~pVi~D~~~~~~~~V~RVlLcSGKvY 1121 (1228)
T PRK12270 1043 TVAQPSTPANYFHLLRRQALSGPRRPLVVFTPKSMLRLKA-AVSDVEDFTEGKFRPVIDDPTVDDGAKVRRVLLCSGKLY 1121 (1228)
T ss_pred EEEccCChHHHHHHHHHHhhcCCCCCeEEEChHHhhcchh-hcCCHHHhccCCceecCCCCCCCCccceeEEEEEcchhH
Confidence 99999999999999975 5455678999999998753210 00011222234433 2221 1 134688999999
Q ss_pred HHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccC----CeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceE
Q 004968 600 QNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNH----TFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWR 674 (721)
Q Consensus 600 ~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~----~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~~~ 674 (721)
...++..+. ...-++-+|.+-.|.||+.+.|++.+.++ +.+.+-||-. .|-|. .++-.|.+. ++...+++
T Consensus 1122 YdL~a~R~k--~~~~d~AIvRvEQLyP~p~~~l~~~l~~ypna~e~~wvQeEP~NqGaw~-f~~~~l~~~--l~~~~~lr 1196 (1228)
T PRK12270 1122 YDLAARREK--DGRDDTAIVRVEQLYPLPRAELREALARYPNATEVVWVQEEPANQGAWP-FMALNLPEL--LPDGRRLR 1196 (1228)
T ss_pred HHHHHHHHh--cCCCceEEEEhhhhCCCCHHHHHHHHHhCCCcceeEEeccCcccCCCch-hhhhhhHhh--ccCCCCce
Confidence 877665432 22346899999999999999998876554 5567777765 57775 333333322 22245677
Q ss_pred EEecCCcccc
Q 004968 675 PIVLPDNYIE 684 (721)
Q Consensus 675 ~~g~~d~f~~ 684 (721)
+++-|..-.+
T Consensus 1197 ~VsRpasasP 1206 (1228)
T PRK12270 1197 RVSRPASASP 1206 (1228)
T ss_pred EecCCcccCC
Confidence 7776654433
|
|
| >PRK06457 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.6e-13 Score=156.15 Aligned_cols=126 Identities=12% Similarity=0.236 Sum_probs=95.9
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCC-CCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcch
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGK-RECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSI 268 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~-~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~ 268 (721)
+.|++|+++|+|+|+++|. + +++|||++|||+|+ |..++|.+|.++++|+++||.||+. +
T Consensus 394 ~~g~mG~glpaaiGa~la~----p~~~~Vv~i~GDGsf~--~~~~eL~Ta~~~~lpi~ivV~NN~~-------------~ 454 (549)
T PRK06457 394 WLGSMGIGVPGSVGASFAV----ENKRQVISFVGDGGFT--MTMMELITAKKYDLPVKIIIYNNSK-------------L 454 (549)
T ss_pred CcchhhhhHHHHHHHHhcC----CCCCeEEEEEcccHHh--hhHHHHHHHHHHCCCeEEEEEECCc-------------c
Confidence 3599999999999999884 4 78999999999997 8999999999999999999999986 3
Q ss_pred hhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHH
Q 004968 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (721)
Q Consensus 269 g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al 348 (721)
|.+.. .+ +.. .. ...+ .++-.++...++++||+++..+ .+.++|.+++
T Consensus 455 g~i~~-~q---------~~~--~~---~~~~--------------~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~al 502 (549)
T PRK06457 455 GMIKF-EQ---------EVM--GY---PEWG--------------VDLYNPDFTKIAESIGFKGFRL---EEPKEAEEII 502 (549)
T ss_pred chHHH-HH---------HHh--cC---Cccc--------------ccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHH
Confidence 33311 11 000 00 0000 0111245567899999999866 7899999999
Q ss_pred HHHHhcCCCCCEEEEEEEec
Q 004968 349 QEVASLGSMGPVLVHVVTEE 368 (721)
Q Consensus 349 ~~a~~~~~~~P~lI~v~T~k 368 (721)
+++.+ .++|+||+|+|..
T Consensus 503 ~~a~~--~~~p~lIeV~i~~ 520 (549)
T PRK06457 503 EEFLN--TKGPAVLDAIVDP 520 (549)
T ss_pred HHHHh--CCCCEEEEEEeCc
Confidence 99987 5889999999964
|
|
| >PRK06965 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.47 E-value=4e-13 Score=156.85 Aligned_cols=130 Identities=15% Similarity=0.198 Sum_probs=97.1
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|++|+++|+|+|+++|. ++++||+++|||+|+ |+..+|.+|.++++|+++||.||+. +|
T Consensus 435 ~~gsmG~glpaaiGa~lA~----p~r~Vv~i~GDGsf~--m~~~eL~Ta~r~~lpviivV~NN~~-------------~~ 495 (587)
T PRK06965 435 GLGTMGVGLPYAMGIKMAH----PDDDVVCITGEGSIQ--MCIQELSTCLQYDTPVKIISLNNRY-------------LG 495 (587)
T ss_pred CcccccchHHHHHHHHHhC----CCCcEEEEEcchhhh--cCHHHHHHHHHcCCCeEEEEEECCc-------------ch
Confidence 4589999999999999995 589999999999996 9999999999999999999999986 34
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcc-cCCCccceeeeeCceEEeccCCCCHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al 348 (721)
.+.. +++...... ..+. .. ..++...++|+||+++..+ ++.++|.++|
T Consensus 496 ~i~~----------~q~~~~~~~----~~~~--------------~~~~~~d~~~iA~a~G~~~~~v---~~~~eL~~al 544 (587)
T PRK06965 496 MVRQ----------WQEIEYSKR----YSHS--------------YMDALPDFVKLAEAYGHVGMRI---EKTSDVEPAL 544 (587)
T ss_pred HHHH----------HHHHhcCCC----cccc--------------CCCCCCCHHHHHHHCCCEEEEE---CCHHHHHHHH
Confidence 3311 111000000 0000 00 0134567899999998866 7899999999
Q ss_pred HHHHhcCCCCCEEEEEEEeccC
Q 004968 349 QEVASLGSMGPVLVHVVTEENR 370 (721)
Q Consensus 349 ~~a~~~~~~~P~lI~v~T~kg~ 370 (721)
+++.+. .++|+||+|.+.+..
T Consensus 545 ~~a~~~-~~~p~lieV~i~~~~ 565 (587)
T PRK06965 545 REALRL-KDRTVFLDFQTDPTE 565 (587)
T ss_pred HHHHhc-CCCcEEEEEEecccc
Confidence 999763 378999999997643
|
|
| >TIGR02418 acolac_catab acetolactate synthase, catabolic | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.5e-13 Score=155.03 Aligned_cols=172 Identities=15% Similarity=0.169 Sum_probs=117.2
Q ss_pred cHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHH
Q 004968 126 AAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGM 204 (721)
Q Consensus 126 g~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~ 204 (721)
....+...|...++ +++.|+.|.| |+.|....+.-. ..+++ ....+.|++|+++|+|+|+
T Consensus 360 ~~~~~~~~l~~~l~-~~~ii~~d~G~~~~~~~~~~~~~-----~~~~~-------------~~~~~~g~mG~~lpaaiGa 420 (539)
T TIGR02418 360 HPLEIIKAMQAIVT-DDVTVTVDMGSHYIWMARYFRSY-----RARHL-------------LISNGMQTLGVALPWAIGA 420 (539)
T ss_pred CHHHHHHHHHhhCC-CCCEEEECCcHHHHHHHHhcccC-----CCCce-------------ecCCCccccccHHHHHHHH
Confidence 33445555544443 5678888998 655665332200 00110 0112568999999999999
Q ss_pred HHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHH
Q 004968 205 AVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSF 284 (721)
Q Consensus 205 AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~ 284 (721)
++|. ++++||+++|||+|+ |+.++|.+|.++++|+++||.||+. +|.+. +.++ ..|
T Consensus 421 ~la~----~~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpi~ivV~NN~~-------------y~~~~-~~~~----~~~ 476 (539)
T TIGR02418 421 ALVR----PNTKVVSVSGDGGFL--FSSMELETAVRLKLNIVHIIWNDNG-------------YNMVE-FQEE----MKY 476 (539)
T ss_pred HHhC----CCCcEEEEEcchhhh--chHHHHHHHHHhCCCeEEEEEECCc-------------chHHH-HHHH----Hhc
Confidence 9984 588999999999997 9999999999999999999999985 33221 0000 000
Q ss_pred HHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEE
Q 004968 285 RQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHV 364 (721)
Q Consensus 285 ~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v 364 (721)
. ...+. ++-.++...++++||+++..+ ++.++|.++|+++.+ .++|++|+|
T Consensus 477 ~----------~~~~~--------------~~~~~d~~~lA~a~G~~~~~V---~~~~eL~~al~~a~~--~~~p~lIev 527 (539)
T TIGR02418 477 Q----------RSSGV--------------DFGPIDFVKYAESFGAKGLRV---ESPDQLEPTLRQAME--VEGPVVVDI 527 (539)
T ss_pred C----------Ccccc--------------cCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHh--CCCCEEEEE
Confidence 0 00000 111245567899999998866 789999999999987 589999999
Q ss_pred EEecc
Q 004968 365 VTEEN 369 (721)
Q Consensus 365 ~T~kg 369 (721)
.+.+.
T Consensus 528 ~v~~~ 532 (539)
T TIGR02418 528 PVDYS 532 (539)
T ss_pred EecCc
Confidence 99653
|
Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family. |
| >PRK05858 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.2e-13 Score=154.61 Aligned_cols=173 Identities=16% Similarity=0.113 Sum_probs=116.8
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+...|...+. +++.|+.|.| |..|...++.-+. .+++. ...+.|++|+++|+|+|
T Consensus 358 l~~~~~~~~l~~~l~-~~~ivv~d~g~~~~~~~~~~~~~~-----p~~~~-------------~~~~~gsmG~~lp~aiG 418 (542)
T PRK05858 358 IHPMRVYGELAPLLD-RDAIVIGDGGDFVSYAGRYIDPYR-----PGCWL-------------DPGPFGCLGTGPGYALA 418 (542)
T ss_pred cCHHHHHHHHHHhcC-CCeEEEECCcHHHHHHHHHccccC-----CCCEE-------------eCCCccccccchhHHHH
Confidence 343445555544443 4556667887 6556654332110 11111 01134899999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+++|. ++++||+++|||+|+ |+..+|.+|.++++|+++||.||+. +|.+....
T Consensus 419 a~la~----p~r~vv~i~GDG~f~--~~~~eL~Ta~~~~lpi~ivV~NN~~-------------y~~~~~~~-------- 471 (542)
T PRK05858 419 ARLAR----PSRQVVLLQGDGAFG--FSLMDVDTLVRHNLPVVSVIGNNGI-------------WGLEKHPM-------- 471 (542)
T ss_pred HHHhC----CCCcEEEEEcCchhc--CcHHHHHHHHHcCCCEEEEEEeCCc-------------hhhHHHHH--------
Confidence 99985 589999999999997 8899999999999999999999985 33321100
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcc-cCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLV 362 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI 362 (721)
+..+ +.+. ..+. -.++...++++||.++..+ .+.++|.++++++.+ .++|+||
T Consensus 472 -~~~~----------~~~~----------~~~~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~al~~a~~--~~~p~lI 525 (542)
T PRK05858 472 -EALY----------GYDV----------AADLRPGTRYDEVVRALGGHGELV---TVPAELGPALERAFA--SGVPYLV 525 (542)
T ss_pred -HHhc----------CCcc----------ccccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHh--CCCcEEE
Confidence 0000 0000 0011 1245567899999998766 789999999999987 5899999
Q ss_pred EEEEecc
Q 004968 363 HVVTEEN 369 (721)
Q Consensus 363 ~v~T~kg 369 (721)
++.|.+.
T Consensus 526 ev~~~~~ 532 (542)
T PRK05858 526 NVLTDPS 532 (542)
T ss_pred EEEECCC
Confidence 9999765
|
|
| >PRK08611 pyruvate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.2e-13 Score=154.93 Aligned_cols=128 Identities=11% Similarity=0.119 Sum_probs=96.9
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|++|+++|+|+|+++|. ++++||+++|||+|+ |..++|.+|+++++|+++||.||+. +|
T Consensus 406 ~~g~mG~glpaaiGa~la~----p~~~Vv~i~GDGsf~--m~~~eL~Ta~r~~l~~iivV~NN~~-------------~g 466 (576)
T PRK08611 406 WLGTMGCGLPGAIAAKIAF----PDRQAIAICGDGGFS--MVMQDFVTAVKYKLPIVVVVLNNQQ-------------LA 466 (576)
T ss_pred CchhhhhhHHHHHHHHHhC----CCCcEEEEEcccHHh--hhHHHHHHHHHhCCCeEEEEEeCCc-------------ch
Confidence 3489999999999999984 589999999999997 8999999999999999999999985 34
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~ 349 (721)
.+. ..+..... . ..+ ..+-.++...++++||.++..+ ++.++|.++|+
T Consensus 467 ~i~-~~q~~~~~-------------~-~~~--------------~~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~al~ 514 (576)
T PRK08611 467 FIK-YEQQAAGE-------------L-EYA--------------IDLSDMDYAKFAEACGGKGYRV---EKAEELDPAFE 514 (576)
T ss_pred HHH-HHHHHhcC-------------C-ccc--------------ccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHH
Confidence 331 11100000 0 000 0111245577899999999866 89999999999
Q ss_pred HHHhcCCCCCEEEEEEEeccC
Q 004968 350 EVASLGSMGPVLVHVVTEENR 370 (721)
Q Consensus 350 ~a~~~~~~~P~lI~v~T~kg~ 370 (721)
++.+ .++|+||+|.+.+..
T Consensus 515 ~a~~--~~~p~lIeV~vd~~~ 533 (576)
T PRK08611 515 EALA--QDKPVIIDVYVDPNA 533 (576)
T ss_pred HHHh--CCCCEEEEEEeCCcc
Confidence 9987 589999999997543
|
|
| >PRK07979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.6e-13 Score=156.03 Aligned_cols=175 Identities=20% Similarity=0.184 Sum_probs=117.2
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+...|...++ +++.++.|.| |+.|....+.-++ .+++- ..-+.|++|+++|+|+|
T Consensus 372 i~~~~~~~~l~~~l~-~d~ivv~d~G~~~~~~~~~~~~~~-----p~~~~-------------~~~~~g~mG~glpaaiG 432 (574)
T PRK07979 372 IKPQAVIETLWRLTK-GDAYVTSDVGQHQMFAALYYPFDK-----PRRWI-------------NSGGLGTMGFGLPAALG 432 (574)
T ss_pred cCHHHHHHHHHhhcC-CCEEEEeCCcHHHHHHHHhcccCC-----CCeEE-------------eCCCccchhhHHHHHHH
Confidence 445555555654432 4566778998 5666653332111 01111 11144899999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+++|. ++++||+++|||+|+ |+.++|.+|.++++|+++||.||+. +|.+... ++..
T Consensus 433 a~la~----p~~~vv~i~GDG~f~--m~~~eL~Ta~r~~l~v~ivV~NN~~-------------yg~i~~~-q~~~---- 488 (574)
T PRK07979 433 VKMAL----PEETVVCVTGDGSIQ--MNIQELSTALQYELPVLVLNLNNRY-------------LGMVKQW-QDMI---- 488 (574)
T ss_pred HHHhC----CCCeEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCch-------------hhHHHHH-HHHh----
Confidence 99984 588999999999996 9999999999999999999999986 4443211 0000
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcc-cCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhc-CCCCCEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL-GSMGPVL 361 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~-~~~~P~l 361 (721)
|. +. .. .... -.++...++|+||.++..+ .+.++|.++|+++.+. +.++|.|
T Consensus 489 ~~-------------~~-~~---------~~~~~~~~d~~~iA~a~G~~g~~v---~~~~eL~~al~~a~~~~~~~~p~l 542 (574)
T PRK07979 489 YS-------------GR-HS---------QSYMQSLPDFVRLAEAYGHVGIQI---SHPDELESKLSEALEQVRNNRLVF 542 (574)
T ss_pred cC-------------Cc-cc---------cccCCCCCCHHHHHHHCCCEEEEE---CCHHHHHHHHHHHHhccCCCCcEE
Confidence 00 00 00 0000 0135567899999998866 7899999999998762 1278999
Q ss_pred EEEEEec
Q 004968 362 VHVVTEE 368 (721)
Q Consensus 362 I~v~T~k 368 (721)
|+|.+.+
T Consensus 543 IeV~i~~ 549 (574)
T PRK07979 543 VDVTVDG 549 (574)
T ss_pred EEEEECC
Confidence 9999965
|
|
| >TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric | Back alignment and domain information |
|---|
Probab=99.46 E-value=7e-12 Score=154.78 Aligned_cols=251 Identities=13% Similarity=0.127 Sum_probs=175.7
Q ss_pred cEeeccccHHHHHHHHHHHHhCCCeeEEEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHHHc
Q 004968 444 RYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMS 523 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~G~~p~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~ 523 (721)
.|+.+ =+|.++++++.|++.+|.+.+++|.+..+..+.+.+ ..++..++|+|+.+..+++.+..+..+.+..|+...|
T Consensus 53 ~~vq~-EsE~~A~~av~GA~~aGara~T~TSs~GL~LM~e~l-~~~ag~~~P~Vi~va~R~~~~~~~~i~~dh~Dv~~~R 130 (1165)
T TIGR02176 53 KVVEM-QSEAGAAGAVHGALQTGALTTTFTASQGLLLMIPNM-YKIAGELLPCVFHVSARAIAAHALSIFGDHQDVMAAR 130 (1165)
T ss_pred eEEEc-cchHHHHHHHHhHhhcCCCEEEecChhHHHHHHHHH-HHHHhccCCEEEEEecCCCCCCCCccCCCchHHHHhh
Confidence 45554 699999999999999999999999998888888877 3556679999998855444333456777777865555
Q ss_pred cCCCcEEEeeCCHHHHHHHHHHHHHh---CCCCEEEEecCCCc----ccccCCCCC------------Cc---------c
Q 004968 524 CLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYPRGAI----VRTDLPGYR------------GI---------P 575 (721)
Q Consensus 524 ~iPnl~V~~Psd~~E~~~~l~~a~~~---~~~P~~ir~~r~~~----~~~~~p~~~------------~~---------~ 575 (721)
. -|+.|++|+|.+|+.++...|++. ...|+++.++--.. ...++++.+ .+ +
T Consensus 131 ~-~G~ivl~s~svQEa~D~al~A~~lAe~~~~Pvi~~~Dgf~tsh~~~~v~~~~~~~v~~~~~~~~~~~~~~~~l~~~~p 209 (1165)
T TIGR02176 131 Q-TGFAMLASSSVQEVMDLALVAHLATIEARVPFMHFFDGFRTSHEIQKIEVLDYEDMASLVNQELVAAFRKRSMNPEHP 209 (1165)
T ss_pred c-CCeEEEeCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCceeccccccccCCCHHHHHhhcChhhcccccccccCCCCC
Confidence 4 589999999999999999888764 45699887753210 000010000 00 0
Q ss_pred ee--------------------------------------cCc----eEE-EEeCCcEEEEEechhhHHHHHHHHHHHhC
Q 004968 576 IE--------------------------------------IGK----GKV-LVEGKDVALLGYGAMVQNCLKARALLSKL 612 (721)
Q Consensus 576 ~~--------------------------------------~gk----~~v-l~eG~dv~Iva~Gs~v~~al~Aa~~L~~~ 612 (721)
.. .|+ .+. -.++++.+||++|+....+.+|++.|+++
T Consensus 210 ~~~G~~~~~~~~~~~~e~~~~~~~~~~~~v~~~~~k~~~~~gr~y~~~e~yg~~dAe~ViV~~GS~~~~~~eav~~Lr~~ 289 (1165)
T TIGR02176 210 HVRGTAQNPDIYFQGREAVNPYYLAVPGIVQKYMDKIAKLTGRSYHLFDYYGAPDAERVIIAMGSVAETIEETVDYLNAK 289 (1165)
T ss_pred ceeCCCCCcchhhhhHHHHHHHHhhhHHHHHHHHHHHHHHhCCccCcceecCCCCCCEEEEEeCCCHHHHHHHHHHHHhc
Confidence 00 011 111 12357999999999999999999999999
Q ss_pred CCCeEEeecCccccccHHHHHHHh-ccCCeEEEEcCCC-CC----ChHHHHHHHHHhcCCCCCCCceEEEecCCccccCC
Q 004968 613 GIDVTVADARFCKPLDIKLVRELC-QNHTFLITVEEGS-IG----GFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHA 686 (721)
Q Consensus 613 Gi~v~VId~~~l~PlD~e~i~~l~-~~~~~vvvvEe~~-~g----G~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g 686 (721)
|++|++|.+|.++||+.+.|++.+ ++.+.|+|+|.+. .| .+...|...+...+ + ..+.. ++ -.|+..|
T Consensus 290 G~kVGli~vr~~rPFp~e~l~~aLp~svK~I~Vler~~~~g~~g~pL~~DV~~al~~~~--~-~~~~v-~~--~~~Glgg 363 (1165)
T TIGR02176 290 GEKVGLLKVRLYRPFSAETFFAALPKSVKRIAVLDRTKEPGAAGEPLYLDVVSAFYEMG--E-AMPVI-LG--GRYGLGS 363 (1165)
T ss_pred CCceeEEEEeEeCCCCHHHHHHHHHhcCCEEEEEECCCCCCcccChHHHHHHHHHhhcc--C-CCCEE-EE--EEECCCC
Confidence 999999999999999999998865 6889999999985 22 47777777665431 0 11111 11 1222212
Q ss_pred CHHHHHHHcCCCHHHHHHHHHHHhh
Q 004968 687 SPTQQLALAGLTGHHIAATALSLLG 711 (721)
Q Consensus 687 ~~~~l~~~~gl~~~~I~~~i~~~l~ 711 (721)
..++++.|.+.+.++..
T Consensus 364 --------~~~tp~~i~~i~~~l~~ 380 (1165)
T TIGR02176 364 --------KEFTPAMVKAVFDNLSG 380 (1165)
T ss_pred --------CCCCHHHHHHHHHHHhc
Confidence 12678888887777653
|
This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase. |
| >COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3e-11 Score=132.32 Aligned_cols=235 Identities=15% Similarity=0.200 Sum_probs=163.7
Q ss_pred CCCeEEEecCCCCccChH---HHHHhCCCcEeeccccHHHHHHHHHHHHhCCCeeEEEecHhhHHHHHHHHHHHhhcCCc
Q 004968 418 DKDIVVVHAGMEMDLSLQ---LFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRL 494 (721)
Q Consensus 418 d~~iv~i~ad~~~~~~l~---~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~tys~Fl~ra~dqi~~~~a~~~l 494 (721)
.+++++.-+=.+.+.-++ .+..+....|+.+ =+|.++++++.|++.+|.|.+++|++..+..+.+.+ ..++++++
T Consensus 20 ~~~~~a~YPITPss~i~e~l~~~~~~~~~~~vq~-EsE~~a~s~v~GA~~aGar~~TaTSg~Gl~Lm~E~l-~~a~~~~~ 97 (365)
T COG0674 20 GCRVIAAYPITPSSEIAEYLASWKAKVGGVFVQM-ESEIGAISAVIGASYAGARAFTATSGQGLLLMAEAL-GLAAGTET 97 (365)
T ss_pred CCcEEEEeCCCCchHHHHHHHHHHhhcCcEEEEe-ccHHHHHHHHHHHHhhCcceEeecCCccHHHHHHHH-HHHHhccC
Confidence 457777665444443333 3333444566665 899999999999999999999999998888888876 68899999
Q ss_pred ceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCC---CCEEEEecCCCccc----c-
Q 004968 495 PVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDD---RPVCFRYPRGAIVR----T- 566 (721)
Q Consensus 495 pVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~---~P~~ir~~r~~~~~----~- 566 (721)
|++++...+++....-||+..+.|+...+. .++.+++-+|.+|+.++...|++.++ -|+++.++...... .
T Consensus 98 P~Vi~~~~R~~ps~g~p~~~dq~D~~~~r~-~g~~~~~~~s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~~~h~~~~v~ 176 (365)
T COG0674 98 PLVIVVAQRPLPSTGLPIKGDQSDLMAARD-TGFPILVSASVQEAFDLTLLAFNIAEKVLTPVIVLLDGFLASHEYEKIE 176 (365)
T ss_pred CeEEEEeccCcCCCcccccccHHHHHHHHc-cCceEEeeccHHHHHHHHHHHHHHHHHhcCCEEEeeccchhcCceeeee
Confidence 999988655554443469999999877776 48888888899999999999987654 48887653221100 0
Q ss_pred ---------cCCCCCCc-------ceecC--------------------------------------c----eEEEE-eC
Q 004968 567 ---------DLPGYRGI-------PIEIG--------------------------------------K----GKVLV-EG 587 (721)
Q Consensus 567 ---------~~p~~~~~-------~~~~g--------------------------------------k----~~vl~-eG 587 (721)
.++..+.+ +.-.| + +.+.. ++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~~r~~~k~~~~~~~~~~~~~~~g~~D 256 (365)
T COG0674 177 LLEQDLPDEEIPDYEPYTALDPSPPVLPGTEAVPDAYVTGFEHDNAGYPAEDDVIKRALRKINELTGREYEPFLYYGYED 256 (365)
T ss_pred cCccccccccccccCcccccCCCCCCcCCCCCCCceEEeeeeccccccccchHHHHHHHHHHHHHhcCCCccceeecCCC
Confidence 00000000 00000 0 01111 46
Q ss_pred CcEEEEEechhhHHHHHHHHHH-HhCCCCeEEeecCccccccHHHHHHHhccCC--eEEEEcCCCCCChHHH
Q 004968 588 KDVALLGYGAMVQNCLKARALL-SKLGIDVTVADARFCKPLDIKLVRELCQNHT--FLITVEEGSIGGFGSH 656 (721)
Q Consensus 588 ~dv~Iva~Gs~v~~al~Aa~~L-~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~--~vvvvEe~~~gG~gs~ 656 (721)
++++||+||+....+.+|+..+ +++|++++++.+|+++||+.+.|++++++.+ .|+.+|-+. |++++-
T Consensus 257 Ae~viV~~Gss~~~~~~a~~~~~~~~g~kvg~l~vr~~rPFp~~~i~~~l~~~~~~~Vl~~e~~~-g~~~~~ 327 (365)
T COG0674 257 AEIVIVAMGSSKGSTAEAVVDLLRDKGEKVGLLKVRTLRPFPAEEIREVLPKTNAVVVLDVEISL-GGLAEP 327 (365)
T ss_pred cCEEEEEeccchHhHHHHHHHHHHhcCceEEEEEEEEeCCCCHHHHHHHhcccceeEEEEEccCC-ccchhh
Confidence 7899999998887777776655 5889999999999999999999999988776 444455443 554433
|
|
| >PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.7e-13 Score=155.84 Aligned_cols=175 Identities=17% Similarity=0.203 Sum_probs=117.1
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+...|...+ |++.|+.|+| |+.|...++. .+ .+++- ...+.|.+|+++|+|+|
T Consensus 387 l~~~~v~~~l~~~~--~d~i~~~D~G~~~~~~~~~~~-~~-----p~~~~-------------~s~~~g~mG~glpaAiG 445 (616)
T PRK07418 387 IYPQEVLLAVRDLA--PDAYYTTDVGQHQMWAAQFLR-NG-----PRRWI-------------SSAGLGTMGFGMPAAMG 445 (616)
T ss_pred cCHHHHHHHHHhhC--CCcEEEECChHHHHHHHHhhh-cC-----CCeEE-------------cCCCccccccHHHHHHH
Confidence 44444555554433 4577778999 5556654332 10 01111 01245899999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+++|. ++++||+++|||+|+ |+..+|.+|.++++|+++||.||+. +|.+.. .++......
T Consensus 446 A~lA~----p~r~Vv~i~GDG~f~--m~~~eL~Ta~r~~lpvi~vV~NN~~-------------~g~i~~-~q~~~~~~~ 505 (616)
T PRK07418 446 VKVAL----PDEEVICIAGDASFL--MNIQELGTLAQYGINVKTVIINNGW-------------QGMVRQ-WQESFYGER 505 (616)
T ss_pred HHHhC----CCCcEEEEEcchHhh--hhHHHHHHHHHhCCCeEEEEEECCc-------------chHHHH-HHHHhcCCC
Confidence 99984 589999999999997 8999999999999999999999996 343311 111000000
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVH 363 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~ 363 (721)
| .+.+. ..-.++...++++||.++..+ ++.++|.++|+++.+ .++|+||+
T Consensus 506 ~-------------~~~~~------------~~~~~d~~~~A~a~G~~g~~V---~~~~el~~al~~a~~--~~~p~lIe 555 (616)
T PRK07418 506 Y-------------SASNM------------EPGMPDFVKLAEAFGVKGMVI---SERDQLKDAIAEALA--HDGPVLID 555 (616)
T ss_pred c-------------eeecC------------CCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHh--CCCCEEEE
Confidence 0 00000 000134567899999999866 789999999999987 58899999
Q ss_pred EEEeccC
Q 004968 364 VVTEENR 370 (721)
Q Consensus 364 v~T~kg~ 370 (721)
|++.+..
T Consensus 556 V~i~~~~ 562 (616)
T PRK07418 556 VHVRRDE 562 (616)
T ss_pred EEecCcc
Confidence 9997543
|
|
| >PRK09124 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.5e-13 Score=154.84 Aligned_cols=128 Identities=20% Similarity=0.242 Sum_probs=96.2
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|++|+++|+|+|+++|. ++++||+++|||+|+ |+.++|.+|.++++|+++||.||+. +|
T Consensus 406 ~~G~mG~~lpaAiGa~la~----p~r~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~-------------~g 466 (574)
T PRK09124 406 NHGSMANAMPQALGAQAAH----PGRQVVALSGDGGFS--MLMGDFLSLVQLKLPVKIVVFNNSV-------------LG 466 (574)
T ss_pred CcccccchHHHHHHHHHhC----CCCeEEEEecCcHHh--ccHHHHHHHHHhCCCeEEEEEeCCc-------------cc
Confidence 4589999999999999984 589999999999997 8999999999999999999999985 23
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~ 349 (721)
.+. ..+.. + .. ...+. ++-.++...++++||+++..+ ++.++|.++++
T Consensus 467 ~i~-~~~~~---------~----~~-~~~~~--------------~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~al~ 514 (574)
T PRK09124 467 FVA-MEMKA---------G----GY-LTDGT--------------DLHNPDFAAIAEACGITGIRV---EKASELDGALQ 514 (574)
T ss_pred cHH-HHHHh---------c----CC-ccccC--------------cCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHH
Confidence 221 00000 0 00 00000 111235567899999999866 78999999999
Q ss_pred HHHhcCCCCCEEEEEEEeccC
Q 004968 350 EVASLGSMGPVLVHVVTEENR 370 (721)
Q Consensus 350 ~a~~~~~~~P~lI~v~T~kg~ 370 (721)
++.+ .++|++|+|.+.+..
T Consensus 515 ~a~~--~~~p~lIev~i~~~~ 533 (574)
T PRK09124 515 RAFA--HDGPALVDVVTAKQE 533 (574)
T ss_pred HHHh--CCCCEEEEEEecCcc
Confidence 9987 589999999996543
|
|
| >PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.3e-13 Score=133.18 Aligned_cols=128 Identities=17% Similarity=0.243 Sum_probs=91.7
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|.+|+++|+|+|+++| .++++||+++|||++. +...+|.+|.++++|+++||.||+.. +
T Consensus 26 ~~g~mG~~~~~aiGa~~a----~p~~~vv~i~GDG~f~--~~~~el~ta~~~~~~v~~vv~nN~~~-------------~ 86 (153)
T PF02775_consen 26 GFGSMGYALPAAIGAALA----RPDRPVVAITGDGSFL--MSLQELATAVRYGLPVVIVVLNNGGY-------------G 86 (153)
T ss_dssp TTT-TTTHHHHHHHHHHH----STTSEEEEEEEHHHHH--HHGGGHHHHHHTTSSEEEEEEESSBS-------------H
T ss_pred CccccCCHHHhhhHHHhh----cCcceeEEecCCccee--eccchhHHHhhccceEEEEEEeCCcc-------------e
Confidence 568999999999999998 4589999999999996 77899999999999999999999862 3
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~ 349 (721)
.... .+....... .....+ +..-.++...+++++|+++. .++..|+++|.++++
T Consensus 87 ~~~~-~~~~~~~~~----------~~~~~~--------------~~~~~~d~~~~a~a~G~~~~-~v~~~~~~el~~al~ 140 (153)
T PF02775_consen 87 MTGG-QQTPFGGGR----------FSGVDG--------------KTFPNPDFAALAEAFGIKGA-RVTTPDPEELEEALR 140 (153)
T ss_dssp HHHH-HHHHTTSTC----------HHSTBT--------------TTSTTCGHHHHHHHTTSEEE-EESCHSHHHHHHHHH
T ss_pred Eecc-ccccCcCcc----------cccccc--------------cccccCCHHHHHHHcCCcEE-EEccCCHHHHHHHHH
Confidence 2211 100000000 000000 00112345678899999987 455556699999999
Q ss_pred HHHhcCCCCCEEEEE
Q 004968 350 EVASLGSMGPVLVHV 364 (721)
Q Consensus 350 ~a~~~~~~~P~lI~v 364 (721)
++.+ .++|+||||
T Consensus 141 ~a~~--~~gp~vIeV 153 (153)
T PF02775_consen 141 EALE--SGGPAVIEV 153 (153)
T ss_dssp HHHH--SSSEEEEEE
T ss_pred HHHh--CCCcEEEEc
Confidence 9997 689999997
|
It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A .... |
| >PRK08273 thiamine pyrophosphate protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.7e-13 Score=154.35 Aligned_cols=176 Identities=16% Similarity=0.160 Sum_probs=115.0
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+...|...+. +++.|+.|+| |+.|.+..+.-.. .+++. ...+.|++|+++|+|+|
T Consensus 366 l~p~~~~~~l~~~l~-~~~ivv~d~G~~~~~~~~~~~~~~-----~~~~~-------------~s~~~g~mG~glpaaiG 426 (597)
T PRK08273 366 VNPQRVFWELSPRLP-DNAILTADSGSCANWYARDLRMRR-----GMMAS-------------LSGTLATMGPAVPYAIA 426 (597)
T ss_pred cCHHHHHHHHHhhCC-CCeEEEECCcHHHHHHHHhCCCCC-----CCeEE-------------ecCccccccchHHHHHH
Confidence 444445444543332 3455668999 6667663332110 00110 01134899999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchH-HHHHHHhhhc-----CCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhh
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQA-YEAMSNAGYL-----DSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSR 277 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~-~Ealn~A~~~-----~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~ 277 (721)
+++|. ++++|||++|||+|+ |+ .++|.+|.++ ++|+++||.||+. +|.+.. .++
T Consensus 427 a~la~----p~~~Vv~i~GDG~f~--m~~~~EL~Ta~r~~~~~~~lpviivV~NN~~-------------~~~i~~-~q~ 486 (597)
T PRK08273 427 AKFAH----PDRPVIALVGDGAMQ--MNGMAELITVAKYWRQWSDPRLIVLVLNNRD-------------LNQVTW-EQR 486 (597)
T ss_pred HHHhC----CCCcEEEEEcchhHh--ccchHHHHHHHHHhhcccCCCEEEEEEeCCc-------------chHHHH-HHH
Confidence 99985 589999999999996 88 6999999999 8999999999985 333311 111
Q ss_pred hhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCC
Q 004968 278 IQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSM 357 (721)
Q Consensus 278 ~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~ 357 (721)
.... .... ....++-.++...++++||+.+..+ .+.++|.++|+++.+ .+
T Consensus 487 ~~~~------------------~~~~-------~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~al~~a~~--~~ 536 (597)
T PRK08273 487 VMEG------------------DPKF-------EASQDLPDVPYARFAELLGLKGIRV---DDPEQLGAAWDEALA--AD 536 (597)
T ss_pred HhcC------------------CCcc-------cccccCCCCCHHHHHHHCCCEEEEE---CCHHHHHHHHHHHHh--CC
Confidence 0000 0000 0000001134567889999999866 789999999999987 58
Q ss_pred CCEEEEEEEecc
Q 004968 358 GPVLVHVVTEEN 369 (721)
Q Consensus 358 ~P~lI~v~T~kg 369 (721)
+|+||+|.+.+.
T Consensus 537 ~p~lIeV~~~~~ 548 (597)
T PRK08273 537 RPVVLEVKTDPN 548 (597)
T ss_pred CCEEEEEEeCCC
Confidence 999999999654
|
|
| >PRK09107 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.5e-13 Score=155.24 Aligned_cols=172 Identities=16% Similarity=0.169 Sum_probs=115.7
Q ss_pred HHHHHHHHhcccCCCCcE-EEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHH
Q 004968 127 AVELTVALHHVFHAPVDK-ILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGM 204 (721)
Q Consensus 127 ~vel~~aL~~vf~~p~D~-iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~ 204 (721)
.-.+...|...++ ++|. ++.|.| |+.|+..++.-++. +++- ...+.|++|+++|+|+|+
T Consensus 382 ~~~~~~~l~~~l~-~~d~iv~~d~G~~~~~~~~~~~~~~p-----~~~~-------------~~~~~gsmG~glpaaiGa 442 (595)
T PRK09107 382 PQYAIQRLYELTK-GRDTYITTEVGQHQMWAAQFFGFEEP-----NRWM-------------TSGGLGTMGYGLPAALGV 442 (595)
T ss_pred HHHHHHHHHHhCC-CCCeEEEECCcHHHHHHHHhcccCCC-----CeEE-------------cCCCchhhhhhHHHHHHH
Confidence 3344444544443 4565 467888 66677644432111 1111 112448999999999999
Q ss_pred HHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHH
Q 004968 205 AVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSF 284 (721)
Q Consensus 205 AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~ 284 (721)
++|. ++++||+++|||+|+ |+.++|.+|.++++|+++||.||+. ++.+.. +
T Consensus 443 ~lA~----p~r~Vv~i~GDG~f~--m~~~EL~Ta~r~~lpvi~vV~NN~~-------------y~~i~~----------~ 493 (595)
T PRK09107 443 QIAH----PDALVIDIAGDASIQ--MCIQEMSTAVQYNLPVKIFILNNQY-------------MGMVRQ----------W 493 (595)
T ss_pred HHhC----CCCeEEEEEcCchhh--ccHHHHHHHHHhCCCeEEEEEeCCc-------------cHHHHH----------H
Confidence 9984 589999999999997 8999999999999999999999986 343311 1
Q ss_pred HHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEE
Q 004968 285 RQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHV 364 (721)
Q Consensus 285 ~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v 364 (721)
++.. ......... ..-.++...++++||+++.++ .+.++|.++|+++.+ .++|+||+|
T Consensus 494 q~~~-~~~~~~~~~----------------~~~~~d~~~lA~a~G~~~~~v---~~~~el~~al~~a~~--~~~p~lIeV 551 (595)
T PRK09107 494 QQLL-HGNRLSHSY----------------TEAMPDFVKLAEAYGAVGIRC---EKPGDLDDAIQEMID--VDKPVIFDC 551 (595)
T ss_pred HHHH-hCCcccccc----------------CCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHh--CCCCEEEEE
Confidence 1000 000000000 000134567899999998866 789999999999987 589999999
Q ss_pred EEec
Q 004968 365 VTEE 368 (721)
Q Consensus 365 ~T~k 368 (721)
.+..
T Consensus 552 ~i~~ 555 (595)
T PRK09107 552 RVAN 555 (595)
T ss_pred EecC
Confidence 9964
|
|
| >PRK08979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.6e-13 Score=154.16 Aligned_cols=174 Identities=18% Similarity=0.185 Sum_probs=116.0
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCCc-hHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVGE-QTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~GH-~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+...|...+ .+++.++.|.|. +.|....+.-++. ++|- ..-+.|++|+++|+|+|
T Consensus 372 i~~~~~~~~l~~~l-~~d~ivv~d~G~~~~~~~~~~~~~~~-----~~~~-------------~~~~~g~mG~glpaaiG 432 (572)
T PRK08979 372 IKPQQVIETLYKLT-NGDAYVASDVGQHQMFAALYYPFDKP-----RRWI-------------NSGGLGTMGFGLPAAMG 432 (572)
T ss_pred cCHHHHHHHHHHhc-CCCeEEEECCcHHHHHHHHhcCcCCC-----CeEE-------------ccCCcccccchhhHHHh
Confidence 44445555555543 245567789994 4565533321110 1111 00134899999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+++|. ++++||+++|||+|+ |+.++|.+|.++++|+++||.||+. +|.+..
T Consensus 433 a~la~----p~~~vv~i~GDG~f~--m~~~EL~Ta~r~~lpv~~vV~NN~~-------------y~~i~~---------- 483 (572)
T PRK08979 433 VKFAM----PDETVVCVTGDGSIQ--MNIQELSTALQYDIPVKIINLNNRF-------------LGMVKQ---------- 483 (572)
T ss_pred hhhhC----CCCeEEEEEcchHhh--ccHHHHHHHHHcCCCeEEEEEeCCc-------------cHHHHH----------
Confidence 99984 589999999999997 8999999999999999999999986 343311
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcc-cCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLV 362 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI 362 (721)
+++.....+ ..+. .. ..++...++|+||.++.++ .+.++|.++|+++.+. .++|+||
T Consensus 484 ~q~~~~~~~----~~~~--------------~~~~~~d~~~~A~a~G~~~~~v---~~~~eL~~al~~a~~~-~~~p~lI 541 (572)
T PRK08979 484 WQDMIYQGR----HSHS--------------YMDSVPDFAKIAEAYGHVGIRI---SDPDELESGLEKALAM-KDRLVFV 541 (572)
T ss_pred HHHHHhCCc----cccc--------------CCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHhc-CCCcEEE
Confidence 111000000 0000 00 0134567899999998866 7899999999998762 3889999
Q ss_pred EEEEec
Q 004968 363 HVVTEE 368 (721)
Q Consensus 363 ~v~T~k 368 (721)
+|.+.+
T Consensus 542 ev~i~~ 547 (572)
T PRK08979 542 DINVDE 547 (572)
T ss_pred EEEeCC
Confidence 999964
|
|
| >cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.3e-13 Score=133.44 Aligned_cols=134 Identities=15% Similarity=0.144 Sum_probs=91.8
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhh
Q 004968 192 GHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINAL 271 (721)
Q Consensus 192 G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l 271 (721)
|.+|+++|+|+|+++|. ++++||+++|||++. .|..++|.+|.++++|+++||.||+..+...+++......+..
T Consensus 51 g~mG~glpaAiGa~la~----p~r~Vv~i~GDGs~f-~m~~~eL~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~~~~~~~ 125 (193)
T cd03375 51 TLHGRALAVATGVKLAN----PDLTVIVVSGDGDLA-AIGGNHFIHAARRNIDITVIVHNNQIYGLTKGQASPTTPEGFK 125 (193)
T ss_pred hhhccHHHHHHHHHHhC----CCCeEEEEeccchHh-hccHHHHHHHHHhCCCeEEEEEcCcccccCCCccCCCCCCCCc
Confidence 78999999999999884 689999999999942 3778999999999999999999998643211111100000000
Q ss_pred hhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHH
Q 004968 272 SSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEV 351 (721)
Q Consensus 272 ~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a 351 (721)
. . ....+.. ...++...+++++|+.++..+.-.+.++|.++|+++
T Consensus 126 ~---------------~------~~~~~~~--------------~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~a 170 (193)
T cd03375 126 T---------------K------TTPYGNI--------------EEPFNPLALALAAGATFVARGFSGDIKQLKEIIKKA 170 (193)
T ss_pred c---------------c------CCCCCCC--------------CCCCCHHHHHHHCCCCEEEEEecCCHHHHHHHHHHH
Confidence 0 0 0000000 001234567889999885333347899999999999
Q ss_pred HhcCCCCCEEEEEEEe
Q 004968 352 ASLGSMGPVLVHVVTE 367 (721)
Q Consensus 352 ~~~~~~~P~lI~v~T~ 367 (721)
.+ .++|++|++.+.
T Consensus 171 l~--~~gp~vIev~~~ 184 (193)
T cd03375 171 IQ--HKGFSFVEVLSP 184 (193)
T ss_pred Hh--cCCCEEEEEECC
Confidence 87 589999999874
|
In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity. |
| >TIGR02720 pyruv_oxi_spxB pyruvate oxidase | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.2e-13 Score=153.49 Aligned_cols=173 Identities=13% Similarity=0.093 Sum_probs=115.0
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+...|...+ .+++.++.|.| |+.|.+.++.-+. .+++- ...+.|++|+++|+|+|
T Consensus 359 i~~~~~~~~l~~~l-~~d~ii~~D~g~~~~~~~~~~~~~~-----~~~~~-------------~~~~~gsmG~glpaAiG 419 (575)
T TIGR02720 359 LQAYQVYRAINKIA-EDDAIYSIDVGDININSNRHLKMTP-----KNKWI-------------TSNLFATMGVGVPGAIA 419 (575)
T ss_pred cCHHHHHHHHHHhC-CCCcEEEeCCcHHHHHHHHhCCcCC-----CCeEE-------------cCCCcchhhchHHHHHH
Confidence 34344444443333 34566778998 6667664332110 01110 11234899999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+++|. ++++||+++|||+|+ |+.++|.+|..+++|+++||.||+. +|.+...
T Consensus 420 a~la~----p~r~Vv~i~GDGsf~--m~~~eL~Tavr~~lpi~~VV~NN~~-------------yg~i~~~--------- 471 (575)
T TIGR02720 420 AKLNY----PDRQVFNLAGDGAFS--MTMQDLLTQVQYHLPVINIVFSNCT-------------YGFIKDE--------- 471 (575)
T ss_pred HHHhC----CCCcEEEEEcccHHH--hhHHHHHHHHHhCCCeEEEEEeCCc-------------cHHHHHH---------
Confidence 99884 589999999999997 8999999999999999999888885 3433110
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHH--hcCCCCCEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVA--SLGSMGPVL 361 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~--~~~~~~P~l 361 (721)
++..+. ...+. ++-.++...++++||+++..+ .+.++|.++++++. + .++|+|
T Consensus 472 -~~~~~~-----~~~~~--------------~~~~~df~~iA~a~G~~~~~v---~~~~el~~al~~a~~~~--~~~p~l 526 (575)
T TIGR02720 472 -QEDTNQ-----PLIGV--------------DFNDADFAKIAEGVGAVGFRV---NKIEQLPAVFEQAKAIK--QGKPVL 526 (575)
T ss_pred -HHHhCC-----Ccccc--------------cCCCCCHHHHHHHCCCEEEEe---CCHHHHHHHHHHHHhhC--CCCcEE
Confidence 000000 00000 011245567899999998855 78899999999987 5 589999
Q ss_pred EEEEEecc
Q 004968 362 VHVVTEEN 369 (721)
Q Consensus 362 I~v~T~kg 369 (721)
|+|++.+.
T Consensus 527 iev~i~~~ 534 (575)
T TIGR02720 527 IDAKITGD 534 (575)
T ss_pred EEEEeCCC
Confidence 99999663
|
Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name. |
| >TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase | Back alignment and domain information |
|---|
Probab=99.43 E-value=3e-12 Score=139.88 Aligned_cols=167 Identities=18% Similarity=0.244 Sum_probs=113.1
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGM 204 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~ 204 (721)
+.-.+.+.++...+ .++|.||.|+|-.+.- +..+|. ....+++. +++..|++|+++|+|+|+
T Consensus 172 ~~r~~ai~~i~~~l-~~~~iVV~~~G~~s~e----------l~~~~~-~~~~~~~~------~f~~~GsMG~a~p~AlG~ 233 (361)
T TIGR03297 172 MTREEAIAAILDHL-PDNTVIVSTTGKTSRE----------LYELRD-RIGQGHAR------DFLTVGSMGHASQIALGL 233 (361)
T ss_pred CCHHHHHHHHHHhC-CCCCEEEECCCCCcHH----------HHHhhc-ccccCCCC------ceEeechhhhHHHHHHHH
Confidence 44444444443333 3678889999953311 112221 11334432 234569999999999999
Q ss_pred HHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 205 AVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 205 AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
|+|. ++++|||+.|||++. |..++|.+++.++ .|+++||.||+..+. +|....
T Consensus 234 ala~----p~r~Vv~i~GDGsfl--m~~~eL~t~~~~~~~nli~VVlNNg~~~~----------~g~q~~---------- 287 (361)
T TIGR03297 234 ALAR----PDQRVVCLDGDGAAL--MHMGGLATIGTQGPANLIHVLFNNGAHDS----------VGGQPT---------- 287 (361)
T ss_pred HHHC----CCCCEEEEEChHHHH--HHHHHHHHHHHhCCCCeEEEEEcCccccc----------cCCcCC----------
Confidence 9985 489999999999996 8889999999998 599999999986210 110000
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCce-EEeccCCCCHHHHHHHHHHHHhcCCCCCEEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLY-YIGPVDGHNIEDLISVLQEVASLGSMGPVLV 362 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~-~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI 362 (721)
.+ ...+...+++++||. .+. .++.++|.++++++++ .++|++|
T Consensus 288 --------------~~-----------------~~~d~~~iA~a~G~~~~~~---v~~~~eL~~al~~a~~--~~gp~lI 331 (361)
T TIGR03297 288 --------------VS-----------------QHLDFAQIAKACGYAKVYE---VSTLEELETALTAASS--ANGPRLI 331 (361)
T ss_pred --------------CC-----------------CCCCHHHHHHHCCCceEEE---eCCHHHHHHHHHHHHh--CCCcEEE
Confidence 00 012235578889974 333 3899999999999987 5889999
Q ss_pred EEEEeccCC
Q 004968 363 HVVTEENRR 371 (721)
Q Consensus 363 ~v~T~kg~G 371 (721)
++++.+|.+
T Consensus 332 eV~v~~g~~ 340 (361)
T TIGR03297 332 EVKVRPGSR 340 (361)
T ss_pred EEEecCCCc
Confidence 999988764
|
This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A |
| >PRK06546 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.5e-13 Score=154.82 Aligned_cols=128 Identities=16% Similarity=0.238 Sum_probs=96.0
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|++|+++|+|+|+++|. ++++|||++|||+|+ |...+|.+|+++++|+++||.||+. +|
T Consensus 406 ~~gsmG~~~paAiGa~la~----p~~~vv~i~GDGsf~--~~~~el~Ta~~~~lpv~~vV~NN~~-------------~g 466 (578)
T PRK06546 406 RHGSMANALPHAIGAQLAD----PGRQVISMSGDGGLS--MLLGELLTVKLYDLPVKVVVFNNST-------------LG 466 (578)
T ss_pred CcccccchhHHHHHHHHhC----CCCcEEEEEcCchHh--hhHHHHHHHHHhCCCeEEEEEECCc-------------cc
Confidence 3589999999999999985 589999999999997 7888999999999999999999986 23
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~ 349 (721)
.+.. .+... + . ...+ .+.-.++...++++||+++..+ ++.++|.++++
T Consensus 467 ~i~~-~q~~~----~---------~-~~~~--------------~~~~~~df~~lA~a~G~~~~~v---~~~~el~~al~ 514 (578)
T PRK06546 467 MVKL-EMLVD----G---------L-PDFG--------------TDHPPVDYAAIAAALGIHAVRV---EDPKDVRGALR 514 (578)
T ss_pred cHHH-HHHhc----C---------C-Cccc--------------ccCCCCCHHHHHHHCCCeeEEe---CCHHHHHHHHH
Confidence 2210 00000 0 0 0000 0011234567889999998755 68999999999
Q ss_pred HHHhcCCCCCEEEEEEEeccC
Q 004968 350 EVASLGSMGPVLVHVVTEENR 370 (721)
Q Consensus 350 ~a~~~~~~~P~lI~v~T~kg~ 370 (721)
++.+ .++|++|+|.+.+..
T Consensus 515 ~a~~--~~gp~lIev~~~~~~ 533 (578)
T PRK06546 515 EAFA--HPGPALVDVVTDPNA 533 (578)
T ss_pred HHHh--CCCCEEEEEEeCCCc
Confidence 9987 589999999997543
|
|
| >PRK12474 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.6e-13 Score=151.54 Aligned_cols=175 Identities=14% Similarity=0.132 Sum_probs=113.7
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+...|..+++ +++.|+.|.| |+.|....+.-+.. ++ | ....+ |++|+++|+|+|
T Consensus 341 i~~~~~~~~l~~~l~-~d~iv~~d~g~~~~~~~~~~~~~~p-----~~------~-------~~~~~-gsmG~glpaAiG 400 (518)
T PRK12474 341 LNSLGVAQLIAHRTP-DQAIYADEALTSGLFFDMSYDRARP-----HT------H-------LPLTG-GSIGQGLPLAAG 400 (518)
T ss_pred cCHHHHHHHHHHHCC-CCeEEEECCCcCHHHHHHhhcccCC-----CC------E-------EccCC-CccCccHHHHHH
Confidence 333444455544443 4556678888 66666544331110 00 1 00113 999999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+++|. ++++|||++|||+|+ |+.++|.+|.++++|+++||.||+. +|.+....+.....
T Consensus 401 a~lA~----p~r~vv~i~GDG~f~--m~~qEL~Ta~r~~lpv~iiV~NN~~-------------y~~i~~~~~~~~~~-- 459 (518)
T PRK12474 401 AAVAA----PDRKVVCPQGDGGAA--YTMQALWTMARENLDVTVVIFANRS-------------YAILNGELQRVGAQ-- 459 (518)
T ss_pred HHHHC----CCCcEEEEEcCchhc--chHHHHHHHHHHCCCcEEEEEcCCc-------------chHHHHHHHhhcCC--
Confidence 99995 589999999999997 9999999999999999999999985 34331100000000
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhccc--CCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMI--GPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVL 361 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~l 361 (721)
.. +... ..+ .+.. .++...++++||+++.++ .+.++|.++++++.+ .++|++
T Consensus 460 ----------~~---~~~~-------~~~-~~~~~~~~d~~~lA~a~G~~~~rv---~~~~eL~~al~~a~~--~~~p~l 513 (518)
T PRK12474 460 ----------GA---GRNA-------LSM-LDLHNPELNWMKIAEGLGVEASRA---TTAEEFSAQYAAAMA--QRGPRL 513 (518)
T ss_pred ----------CC---Cccc-------ccc-ccCCCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHc--CCCCEE
Confidence 00 0000 000 0001 124567899999998866 789999999999987 589999
Q ss_pred EEEEE
Q 004968 362 VHVVT 366 (721)
Q Consensus 362 I~v~T 366 (721)
|+|.+
T Consensus 514 iev~~ 518 (518)
T PRK12474 514 IEAMI 518 (518)
T ss_pred EEEEC
Confidence 99874
|
|
| >PRK06112 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-12 Score=152.24 Aligned_cols=175 Identities=13% Similarity=0.213 Sum_probs=114.3
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+...|...++ +++.++.|.| |+.|....+.-+.. + ..| +...+.|++|+++|+|+|
T Consensus 387 i~~~~v~~~l~~~l~-~~~ivv~d~g~~~~~~~~~~~~~~~-----~-----~~~-------~~~~g~gsmG~~l~~aiG 448 (578)
T PRK06112 387 IRPERIMAELQAVLT-GDTIVVADASYSSIWVANFLTARRA-----G-----MRF-------LTPRGLAGLGWGVPMAIG 448 (578)
T ss_pred cCHHHHHHHHHHhCC-CCCEEEEcccHHHHHHHHhcCccCC-----C-----ceE-------ECCCCccccccHHHHHHH
Confidence 333444444544433 4567778988 66666533321100 0 000 111245889999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+++| .++++|||++|||+|+ |++++|++|+++++|+++||.||+.. |.+. ..++..
T Consensus 449 a~la----~~~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~~vv~NN~~~-------------g~~~-~~~~~~---- 504 (578)
T PRK06112 449 AKVA----RPGAPVICLVGDGGFA--HVWAELETARRMGVPVTIVVLNNGIL-------------GFQK-HAETVK---- 504 (578)
T ss_pred HHhh----CCCCcEEEEEcchHHH--hHHHHHHHHHHhCCCeEEEEEeCCcc-------------CCEE-eccccc----
Confidence 9887 4588999999999996 99999999999999999999999852 1110 000000
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVH 363 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~ 363 (721)
|.. . ..+ .+.-.++...++++||+++..+ ++.++|.++|+++.+ .++|++||
T Consensus 505 ~~~--------~-~~~--------------~~~~~~d~~~~A~a~G~~~~~v---~~~~el~~al~~a~~--~~gp~lIe 556 (578)
T PRK06112 505 FGT--------H-TDA--------------CHFAAVDHAAIARACGCDGVRV---EDPAELAQALAAAMA--APGPTLIE 556 (578)
T ss_pred cCC--------c-ccc--------------CcCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHh--CCCCEEEE
Confidence 000 0 000 0000123456889999998855 689999999999987 58999999
Q ss_pred EEEecc
Q 004968 364 VVTEEN 369 (721)
Q Consensus 364 v~T~kg 369 (721)
|++.+.
T Consensus 557 v~~~~~ 562 (578)
T PRK06112 557 VITDPS 562 (578)
T ss_pred EEcCcc
Confidence 999653
|
|
| >PRK11269 glyoxylate carboligase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.8e-13 Score=153.81 Aligned_cols=186 Identities=18% Similarity=0.149 Sum_probs=116.4
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+...|...+. +++.|+.|.| |+.|+..++.-+ ..+++. ..-+.|++|+++|+|+|
T Consensus 370 l~~~~~~~~l~~~l~-~d~ivv~d~g~~~~~~~~~~~~~-----~p~~~~-------------~~~~~G~mG~glpaAiG 430 (591)
T PRK11269 370 IKPQRVYEEMNKAFG-RDTCYVSTIGLSQIAAAQFLHVY-----KPRHWI-------------NCGQAGPLGWTIPAALG 430 (591)
T ss_pred cCHHHHHHHHHHhcC-CCcEEEECCcHHHHHHHHhcccC-----CCCcEE-------------eCCccccccchhhhHHh
Confidence 444455555544443 4566778888 444655333211 001110 00135899999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+++|. ++++|||++|||+|+ |+.++|.+|.++++|+++||.||+. +|.+.. ++..
T Consensus 431 a~la~----p~r~Vv~i~GDG~f~--m~~~eL~Ta~~~~lpv~~vV~NN~~-------------~g~i~~-~~~~----- 485 (591)
T PRK11269 431 VRAAD----PDRNVVALSGDYDFQ--FLIEELAVGAQFNLPYIHVLVNNAY-------------LGLIRQ-AQRA----- 485 (591)
T ss_pred hhhhC----CCCcEEEEEccchhh--cCHHHHHHHHHhCCCeEEEEEeCCc-------------hhHHHH-HHHH-----
Confidence 99984 588999999999997 8899999999999999999999985 343311 1100
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhc--CCCCCEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL--GSMGPVL 361 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~--~~~~P~l 361 (721)
|..-+..... ...+..+ -...-.+++..++++||.++..+ ++.++|.++|+++.+. +.++|+|
T Consensus 486 ~~~~~~~~~~-~~~~~~~-----------~~~~~~~df~~lA~a~G~~~~~v---~~~~eL~~al~~a~~~~~~~~gp~l 550 (591)
T PRK11269 486 FDMDYCVQLA-FENINSP-----------ELNGYGVDHVKVAEGLGCKAIRV---FKPEDIAPALEQAKALMAEFRVPVV 550 (591)
T ss_pred hccCccceee-ccccccc-----------cccCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHhhcccCCCcEE
Confidence 0000000000 0000000 00001135567899999998876 8999999999998741 1478999
Q ss_pred EEEEEecc
Q 004968 362 VHVVTEEN 369 (721)
Q Consensus 362 I~v~T~kg 369 (721)
|+|.+.+.
T Consensus 551 ieV~v~~~ 558 (591)
T PRK11269 551 VEVILERV 558 (591)
T ss_pred EEEEeccc
Confidence 99999643
|
|
| >PRK08527 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.43 E-value=1e-12 Score=152.74 Aligned_cols=175 Identities=15% Similarity=0.143 Sum_probs=115.4
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+...|...+. +++.++.|.| |..|...++.-+ ..++|- ..-+.|++|+++|+|+|
T Consensus 365 i~~~~~~~~l~~~l~-~d~iv~~d~g~~~~~~~~~~~~~-----~~~~~~-------------~~~~~g~mG~~l~~aiG 425 (563)
T PRK08527 365 LKPQWVIERVGELLG-DDAIISTDVGQHQMWVAQFYPFN-----YPRQLA-------------TSGGLGTMGYGLPAALG 425 (563)
T ss_pred cCHHHHHHHHHhhCC-CCeEEEECCcHHHHHHHHhcccC-----CCCeEE-------------cCCCcccccchHHHHHH
Confidence 333445555544443 3445667998 655655333211 011111 11244899999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+++|. ++++|||++|||+|+ |+..+|.+|.++++|+++||.||+. +|.+.. .++......
T Consensus 426 a~la~----p~~~vv~i~GDG~f~--m~~~eL~Ta~~~~lpvi~vV~NN~~-------------~~~i~~-~~~~~~~~~ 485 (563)
T PRK08527 426 AKLAV----PDKVVINFTGDGSIL--MNIQELMTAVEYKIPVINIILNNNF-------------LGMVRQ-WQTFFYEER 485 (563)
T ss_pred HHHhC----CCCcEEEEecCchhc--ccHHHHHHHHHhCCCeEEEEEECCc-------------chhHHH-HHHhhcCCc
Confidence 99984 478999999999997 8888999999999999999999986 232211 100000000
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcc-cCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLV 362 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI 362 (721)
| .+. +. ..++...+++++|+++... ++.++|.++|+++.+ .++|+||
T Consensus 486 ~-------------~~~--------------~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~~a~~--~~~p~li 533 (563)
T PRK08527 486 Y-------------SET--------------DLSTQPDFVKLAESFGGIGFRV---TTKEEFDKALKEALE--SDKVALI 533 (563)
T ss_pred e-------------eec--------------cCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHh--CCCCEEE
Confidence 0 000 00 0134466889999998866 789999999999987 5899999
Q ss_pred EEEEeccC
Q 004968 363 HVVTEENR 370 (721)
Q Consensus 363 ~v~T~kg~ 370 (721)
||.+.+..
T Consensus 534 eV~v~~~~ 541 (563)
T PRK08527 534 DVKIDRFE 541 (563)
T ss_pred EEEECCcc
Confidence 99997643
|
|
| >PRK06456 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-12 Score=151.81 Aligned_cols=174 Identities=17% Similarity=0.216 Sum_probs=117.2
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+..-.+...|..++. +++.++.|+| |+.|+..++.-... +++ +...+.|++|+++|+|+|
T Consensus 372 i~~~~~~~~l~~~l~-~~~ii~~d~g~~~~~~~~~~~~~~p-----~~~-------------~~~~~~g~mG~glpaAiG 432 (572)
T PRK06456 372 LKPWKIMKTIRQALP-RDAIVTTGVGQHQMWAEVFWEVLEP-----RTF-------------LTSSGMGTMGFGLPAAMG 432 (572)
T ss_pred cCHHHHHHHHHHhCC-CCEEEEECCcHHHHHHHHhcCcCCC-----CcE-------------EcCCCcccccchhHHHHH
Confidence 334445555544443 4566778998 55566533321110 011 111245899999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+++|. ++++||+++|||+|+ |+..+|.+|.++++|+++||.||+. +|.+.. +++. .
T Consensus 433 a~la~----p~~~vv~i~GDG~f~--m~~~eL~Ta~~~~l~i~ivV~NN~~-------------yg~i~~-~q~~----~ 488 (572)
T PRK06456 433 AKLAR----PDKVVVDLDGDGSFL--MTGTNLATAVDEHIPVISVIFDNRT-------------LGLVRQ-VQDL----F 488 (572)
T ss_pred HHHhC----CCCeEEEEEccchHh--cchHHHHHHHHhCCCeEEEEEECCc-------------hHHHHH-HHHH----h
Confidence 99984 588999999999997 8889999999999999999999985 343311 1000 0
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcc-cCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLV 362 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI 362 (721)
|. .... + .++ ..++...++++||.++..+ ++.++|.++|+++.+ .++|+||
T Consensus 489 ~~------~~~~---~--------------~~~~~~~d~~~~A~a~G~~~~~v---~~~~eL~~al~~a~~--~~~p~lI 540 (572)
T PRK06456 489 FG------KRIV---G--------------VDYGPSPDFVKLAEAFGALGFNV---TTYEDIEKSLKSAIK--EDIPAVI 540 (572)
T ss_pred hC------CCcc---c--------------ccCCCCCCHHHHHHHCCCeeEEe---CCHHHHHHHHHHHHh--CCCCEEE
Confidence 00 0000 0 001 0135567899999998866 889999999999987 5899999
Q ss_pred EEEEecc
Q 004968 363 HVVTEEN 369 (721)
Q Consensus 363 ~v~T~kg 369 (721)
+|.+.+.
T Consensus 541 ev~v~~~ 547 (572)
T PRK06456 541 RVPVDKE 547 (572)
T ss_pred EEEeCcc
Confidence 9999753
|
|
| >PRK08322 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=2e-12 Score=149.97 Aligned_cols=173 Identities=12% Similarity=0.119 Sum_probs=116.2
Q ss_pred cHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHH
Q 004968 126 AAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGM 204 (721)
Q Consensus 126 g~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~ 204 (721)
....+...|...++ +++.++.|.| |+.|....+.-... ++ .+...+.|.+|+++|+|+|+
T Consensus 358 ~~~~~~~~l~~~l~-~~~ii~~d~G~~~~~~~~~~~~~~~-----~~-------------~~~~~~~g~mG~~lpaaiGa 418 (547)
T PRK08322 358 KPQRIVADLRKVMP-DDDIVILDNGAYKIWFARNYRAYEP-----NT-------------CLLDNALATMGAGLPSAIAA 418 (547)
T ss_pred CHHHHHHHHHHHCC-CCeEEEECCcHHHHHHHHhcccCCC-----CC-------------EEcCCCcccccchhHHHHHH
Confidence 33344444544443 4677778999 54555433321100 01 11112558999999999999
Q ss_pred HHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHH
Q 004968 205 AVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSF 284 (721)
Q Consensus 205 AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~ 284 (721)
++|. ++++||+++|||+|+ |+.++|.+|.++++|+++||.||+. +|.+.. .++.. |
T Consensus 419 ~la~----p~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~iiV~NN~~-------------~g~~~~-~~~~~----~ 474 (547)
T PRK08322 419 KLVH----PDRKVLAVCGDGGFM--MNSQELETAVRLGLPLVVLILNDNA-------------YGMIRW-KQENM----G 474 (547)
T ss_pred HHhC----CCCcEEEEEcchhHh--ccHHHHHHHHHhCCCeEEEEEeCCC-------------cchHHH-HHHhh----c
Confidence 9984 589999999999997 8889999999999999999999985 232211 00000 0
Q ss_pred HHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEE
Q 004968 285 RQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHV 364 (721)
Q Consensus 285 ~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v 364 (721)
. ...+ -++-.++...++++||+++..+ .+.++|.++++++.+ .++|+||||
T Consensus 475 ~----------~~~~--------------~~~~~~df~~lA~a~G~~~~~v---~~~~eL~~al~~a~~--~~~p~lIev 525 (547)
T PRK08322 475 F----------EDFG--------------LDFGNPDFVKYAESYGAKGYRV---ESADDLLPTLEEALA--QPGVHVIDC 525 (547)
T ss_pred C----------Cccc--------------ccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHh--CCCCEEEEE
Confidence 0 0000 0111245577899999999866 789999999999987 589999999
Q ss_pred EEeccC
Q 004968 365 VTEENR 370 (721)
Q Consensus 365 ~T~kg~ 370 (721)
.+....
T Consensus 526 ~v~~~~ 531 (547)
T PRK08322 526 PVDYSE 531 (547)
T ss_pred EecCcc
Confidence 996543
|
|
| >PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-12 Score=151.76 Aligned_cols=175 Identities=18% Similarity=0.213 Sum_probs=118.0
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+...|...++ +++.++.|.| |+.|....+.-++. +.+- ...+.|++|+++|+|+|
T Consensus 352 ~~~~~~~~~l~~~~~-~~~iiv~d~g~~~~~~~~~~~~~~~-----~~~~-------------~~~~~g~mG~glpaAiG 412 (548)
T PRK08978 352 IYAPALLKQLSDRKP-ADTVVTTDVGQHQMWVAQHMRFTRP-----ENFI-------------TSSGLGTMGFGLPAAIG 412 (548)
T ss_pred cCHHHHHHHHHHhCC-CCcEEEecCcHHHHHHHHhcccCCC-----CeEE-------------eCCchhhhhchHHHHHH
Confidence 444455555655443 4567778999 55555433321111 1111 11245899999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+++|. ++++||+++|||+|+ |...+|.+|.++++|+++||.||+. +|.+.. .++..
T Consensus 413 a~la~----p~~~vv~i~GDG~f~--~~~~eL~ta~~~~l~v~ivV~NN~~-------------~~~~~~-~~~~~---- 468 (548)
T PRK08978 413 AQVAR----PDDTVICVSGDGSFM--MNVQELGTIKRKQLPVKIVLLDNQR-------------LGMVRQ-WQQLF---- 468 (548)
T ss_pred HHHhC----CCCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCc-------------cHHHHH-HHHHH----
Confidence 99984 589999999999997 8889999999999999999999985 333311 11000
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcc-cCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLV 362 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI 362 (721)
|. . ...+. ++ -.++...++++||+++..+ .+.++|.++|+++.+ .++|.||
T Consensus 469 ~~-----~----~~~~~--------------~~~~~~d~~~la~a~G~~~~~v---~~~~el~~al~~a~~--~~~p~lI 520 (548)
T PRK08978 469 FD-----E----RYSET--------------DLSDNPDFVMLASAFGIPGQTI---TRKDQVEAALDTLLN--SEGPYLL 520 (548)
T ss_pred hC-----C----cceec--------------CCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHh--CCCCEEE
Confidence 00 0 00000 00 0134567899999999866 789999999999987 5899999
Q ss_pred EEEEeccC
Q 004968 363 HVVTEENR 370 (721)
Q Consensus 363 ~v~T~kg~ 370 (721)
||.+.+..
T Consensus 521 eV~id~~~ 528 (548)
T PRK08978 521 HVSIDELE 528 (548)
T ss_pred EEEecCcc
Confidence 99997543
|
|
| >PLN02470 acetolactate synthase | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-12 Score=152.59 Aligned_cols=137 Identities=15% Similarity=0.185 Sum_probs=96.6
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|++|+++|+|+|+++|. ++++|||++|||+|+ |+..+|.+|.++++|+++||.||+. +|
T Consensus 424 ~~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~l~v~ivV~NN~~-------------yg 484 (585)
T PLN02470 424 GLGAMGFGLPAAIGAAAAN----PDAIVVDIDGDGSFI--MNIQELATIHVENLPVKIMVLNNQH-------------LG 484 (585)
T ss_pred ccccccchHHHHHHHHHhC----CCCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCc-------------ch
Confidence 4489999999999999984 588999999999996 8999999999999999999999985 34
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~ 349 (721)
.+.. +++............+.+.. .....++...++++||+++..+ ++.++|.++|+
T Consensus 485 ~i~~----------~~~~~~~~~~~~~~~~~~~~----------~~~~~~d~~~iA~a~G~~~~~v---~~~~el~~al~ 541 (585)
T PLN02470 485 MVVQ----------WEDRFYKANRAHTYLGDPDA----------EAEIFPDFLKFAEGCKIPAARV---TRKSDLREAIQ 541 (585)
T ss_pred HHHH----------HHHHHhCCceeeeecCcccc----------ccCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHH
Confidence 3311 11000000000000000000 0000134567899999998866 78999999999
Q ss_pred HHHhcCCCCCEEEEEEEeccC
Q 004968 350 EVASLGSMGPVLVHVVTEENR 370 (721)
Q Consensus 350 ~a~~~~~~~P~lI~v~T~kg~ 370 (721)
++.+ .++|+||||.+.+..
T Consensus 542 ~a~~--~~~p~lieV~i~~~~ 560 (585)
T PLN02470 542 KMLD--TPGPYLLDVIVPHQE 560 (585)
T ss_pred HHHh--CCCCEEEEEEeCCcc
Confidence 9987 589999999996533
|
|
| >PRK06725 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.4e-12 Score=151.66 Aligned_cols=174 Identities=14% Similarity=0.197 Sum_probs=115.6
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+...|..+++ +++.|+.|.| |..|+...+.-+. .+. | ...-+.|++|+++|+|+|
T Consensus 373 l~~~~~~~~l~~~l~-~d~iiv~d~g~~~~~~~~~~~~~~-----p~~------~-------~~~~~~gsmG~~lp~aiG 433 (570)
T PRK06725 373 LKPQHVINLVSELTN-GEAIVTTEVGQHQMWAAHFYKAKN-----PRT------F-------LTSGGLGTMGFGFPAAIG 433 (570)
T ss_pred cCHHHHHHHHHhhCC-CCcEEEeCCcHHHHHHHHhccccC-----CCe------E-------EccCCcccccchhhHHHh
Confidence 444455555544433 4566778988 5555553332100 000 1 111244899999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+++|. ++++||+++|||+|+ |+..+|.+|.++++|+++||.||+.. +.+.. .++......
T Consensus 434 a~lA~----p~~~vv~i~GDG~f~--~~~~el~Ta~~~~lpi~~vV~NN~~~-------------~~~~~-~q~~~~~~~ 493 (570)
T PRK06725 434 AQLAK----EEELVICIAGDASFQ--MNIQELQTIAENNIPVKVFIINNKFL-------------GMVRQ-WQEMFYENR 493 (570)
T ss_pred hHhhc----CCCeEEEEEecchhh--ccHHHHHHHHHhCCCeEEEEEECCcc-------------HHHHH-HHHHhcCCc
Confidence 99984 589999999999996 88899999999999999999999862 32211 000000000
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVH 363 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~ 363 (721)
+ .+ .+.-.++...++++||+++..+ ++.++|.++++++.+ .++|++|+
T Consensus 494 ~-------------~~--------------~~~~~~d~~~~a~a~G~~~~~v---~~~~~l~~al~~a~~--~~~p~lie 541 (570)
T PRK06725 494 L-------------SE--------------SKIGSPDFVKVAEAYGVKGLRA---TNSTEAKQVMLEAFA--HEGPVVVD 541 (570)
T ss_pred c-------------cc--------------CcCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHh--CCCCEEEE
Confidence 0 00 0001234567889999998865 789999999999987 58999999
Q ss_pred EEEecc
Q 004968 364 VVTEEN 369 (721)
Q Consensus 364 v~T~kg 369 (721)
+.+...
T Consensus 542 v~id~~ 547 (570)
T PRK06725 542 FCVEEG 547 (570)
T ss_pred EEeCCc
Confidence 999653
|
|
| >PRK06882 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-12 Score=151.90 Aligned_cols=129 Identities=21% Similarity=0.255 Sum_probs=95.5
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|.+|+++|+|+|+++|. ++++||+++|||+|+ |+.++|++|.++++|+++||.||+. ++
T Consensus 419 ~~g~mG~~lp~aiGa~la~----p~~~vv~i~GDG~f~--~~~~eL~ta~~~~lpv~~vV~NN~~-------------~~ 479 (574)
T PRK06882 419 GAGTMGFGLPAAIGVKFAH----PEATVVCVTGDGSIQ--MNIQELSTAKQYDIPVVIVSLNNRF-------------LG 479 (574)
T ss_pred CcccccchhHHHHHHHhhc----CCCcEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEECch-------------hH
Confidence 4588999999999999985 488999999999996 8889999999999999999999986 33
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcc--cCCCccceeeeeCceEEeccCCCCHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM--IGPQGSTLFEELGLYYIGPVDGHNIEDLISV 347 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~a 347 (721)
.+.. .++.... +.. .... -.++...++++||+++..+ ++.++|.++
T Consensus 480 ~i~~-~q~~~~~-----------------~~~-----------~~~~~~~~~d~~~la~a~G~~~~~v---~~~~eL~~a 527 (574)
T PRK06882 480 MVKQ-WQDLIYS-----------------GRH-----------SQVYMNSLPDFAKLAEAYGHVGIQI---DTPDELEEK 527 (574)
T ss_pred HHHH-HHHHhcC-----------------Ccc-----------cccCCCCCCCHHHHHHHCCCeEEEe---CCHHHHHHH
Confidence 3211 0000000 000 0000 0123466889999998866 789999999
Q ss_pred HHHHHhcCCCCCEEEEEEEeccC
Q 004968 348 LQEVASLGSMGPVLVHVVTEENR 370 (721)
Q Consensus 348 l~~a~~~~~~~P~lI~v~T~kg~ 370 (721)
|+++.+. .++|+||||.+.+..
T Consensus 528 l~~a~~~-~~~p~liev~i~~~~ 549 (574)
T PRK06882 528 LTQAFSI-KDKLVFVDVNVDETE 549 (574)
T ss_pred HHHHHhc-CCCcEEEEEEecCcc
Confidence 9999873 378999999997533
|
|
| >TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.4e-13 Score=153.62 Aligned_cols=176 Identities=13% Similarity=0.119 Sum_probs=116.7
Q ss_pred HHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHH
Q 004968 127 AVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMA 205 (721)
Q Consensus 127 ~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~A 205 (721)
...+...|...+. +++.|+.|+| |+.|.+.++.-. ..+++- ...+.|++|+++|+|+|++
T Consensus 383 ~~~~~~~l~~~l~-~~~iv~~d~G~~~~~~~~~~~~~-----~p~~~~-------------~~~~~g~mG~~lpaaiGa~ 443 (579)
T TIGR03457 383 PRQVLRELEKAMP-EDAIVSTDIGNINSVANSYLRFE-----KPRKFL-------------APMSFGNCGYAFPTIIGAK 443 (579)
T ss_pred HHHHHHHHHHhCC-CCeEEEECCchhHHHHHHhcCcC-----CCCeEE-------------cCCccccccchHHHHHhhh
Confidence 3344444433332 4566778998 666766444311 111111 1113489999999999999
Q ss_pred HHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHH
Q 004968 206 VARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFR 285 (721)
Q Consensus 206 lA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~ 285 (721)
+|. ++++|||++|||+|+ |+..+|.+|.++++|+++||.||+. +|.+.. .+. ..|.
T Consensus 444 la~----p~~~Vv~i~GDG~f~--m~~~eL~Tavr~~lpvi~vV~NN~~-------------yg~i~~-~~~----~~~~ 499 (579)
T TIGR03457 444 IAA----PDRPVVAYAGDGAWG--MSMNEIMTAVRHDIPVTAVVFRNRQ-------------WGAEKK-NQV----DFYN 499 (579)
T ss_pred hhC----CCCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEECcc-------------hHHHHH-HHH----HhhC
Confidence 984 589999999999997 8889999999999999999999986 343311 000 0000
Q ss_pred HHHHHHhhhhhccCcchHHHHHHHHHHhhcccC-CCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhc-CCCCCEEEE
Q 004968 286 QLREVAKGMTKRIGRGMHEWAAKVDEYARGMIG-PQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL-GSMGPVLVH 363 (721)
Q Consensus 286 ~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~-~~~~P~lI~ 363 (721)
. ...+. ++-. ++...++|+||.++..+ ++.++|.++|+++.+. ..++|+||+
T Consensus 500 ~---------~~~~~--------------~~~~~~d~~~lA~a~G~~g~~v---~~~~el~~al~~a~~~~~~~~p~lie 553 (579)
T TIGR03457 500 N---------RFVGT--------------ELESELSFAGIADAMGAKGVVV---DKPEDVGPALKKAIAAQAEGKTTVIE 553 (579)
T ss_pred C---------cceec--------------cCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHhhCCCCCcEEEE
Confidence 0 00000 0101 25567899999998866 8899999999998652 137899999
Q ss_pred EEEeccCC
Q 004968 364 VVTEENRR 371 (721)
Q Consensus 364 v~T~kg~G 371 (721)
|.+.+..+
T Consensus 554 V~v~~~~~ 561 (579)
T TIGR03457 554 IVCTRELG 561 (579)
T ss_pred EEeCCCcC
Confidence 99977554
|
Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur. |
| >PRK07586 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.4e-12 Score=150.12 Aligned_cols=175 Identities=13% Similarity=0.099 Sum_probs=112.8
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+...|...+. +++.|+.|.| |+.|...++.-.. |. +.+...+ |++|+++|+|+|
T Consensus 337 i~~~~~~~~l~~~l~-~~~ivv~d~g~~~~~~~~~~~~~~---------------~~---~~~~~~~-g~mG~~lpaaiG 396 (514)
T PRK07586 337 LTPEAIAQVIAALLP-ENAIVVDESITSGRGFFPATAGAA---------------PH---DWLTLTG-GAIGQGLPLATG 396 (514)
T ss_pred cCHHHHHHHHHHhCC-CCeEEEeCCCcCHHHHHHhccccC---------------CC---CEEccCC-cccccHHHHHHH
Confidence 344445555544443 4566778988 5555553322100 10 0111123 889999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+++|+ ++++|||++|||+|+ |+.++|.+|.++++|+++||.||+. +|.+.. .+
T Consensus 397 a~lA~----p~r~Vv~i~GDGsf~--m~~~EL~Ta~~~~lpv~ivV~NN~~-------------y~~~~~-~~------- 449 (514)
T PRK07586 397 AAVAC----PDRKVLALQGDGSAM--YTIQALWTQARENLDVTTVIFANRA-------------YAILRG-EL------- 449 (514)
T ss_pred HHHhC----CCCeEEEEEechHHH--hHHHHHHHHHHcCCCCEEEEEeCch-------------hHHHHH-HH-------
Confidence 99995 589999999999996 9999999999999999999988885 343311 00
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcc--cCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM--IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVL 361 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~l 361 (721)
+.. .. ...+... ..+. +. -.++...++++||+++..+ ++.++|.++++++.+ .++|+|
T Consensus 450 --~~~--~~---~~~~~~~-------~~~~-~~~~~~~d~~~lA~a~G~~~~~V---~~~~el~~al~~a~~--~~~p~l 509 (514)
T PRK07586 450 --ARV--GA---GNPGPRA-------LDML-DLDDPDLDWVALAEGMGVPARRV---TTAEEFADALAAALA--EPGPHL 509 (514)
T ss_pred --HHh--cC---CCCCccc-------cccc-cCCCCCCCHHHHHHHCCCcEEEe---CCHHHHHHHHHHHHc--CCCCEE
Confidence 000 00 0000000 0000 00 0135567899999998866 789999999999987 589999
Q ss_pred EEEEE
Q 004968 362 VHVVT 366 (721)
Q Consensus 362 I~v~T 366 (721)
|+|.+
T Consensus 510 iev~~ 514 (514)
T PRK07586 510 IEAVV 514 (514)
T ss_pred EEEEC
Confidence 99863
|
|
| >PRK08155 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.40 E-value=2e-12 Score=150.52 Aligned_cols=174 Identities=19% Similarity=0.205 Sum_probs=114.3
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+...|...++ +++.|+.|+| |+.|....+.-+. .+++ ....+.|++|+++|+|+|
T Consensus 370 l~~~~v~~~l~~~l~-~~~iv~~D~G~~~~~~~~~~~~~~-----~~~~-------------~~~~~~g~mG~~lpaaiG 430 (564)
T PRK08155 370 LSHYGLINAVAACVD-DNAIITTDVGQHQMWTAQAYPLNR-----PRQW-------------LTSGGLGTMGFGLPAAIG 430 (564)
T ss_pred cCHHHHHHHHHHhCC-CCeEEEECCchHHHHHHHhccccC-----CCeE-------------EeCCCcccccchhHHHHH
Confidence 444445555544443 4556778999 6666543322110 0111 111245899999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+++|. ++++||+++|||+|+ |...+|.+|.++++|+++||.||+. +|.+.. .++..
T Consensus 431 a~la~----~~~~vv~i~GDGsf~--~~~~eL~ta~~~~lpvi~vV~NN~~-------------~g~~~~-~q~~~---- 486 (564)
T PRK08155 431 AALAN----PERKVLCFSGDGSLM--MNIQEMATAAENQLDVKIILMNNEA-------------LGLVHQ-QQSLF---- 486 (564)
T ss_pred HHHhC----CCCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCc-------------ccccHH-HHHHh----
Confidence 99985 588999999999997 7788899999999999999999985 222210 00000
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcc-cCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLV 362 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI 362 (721)
| ..... +. .+ -.++...++++||++++.+ .+.++|.++++++.+ .++|++|
T Consensus 487 ~------~~~~~---~~--------------~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~~a~~--~~~p~lI 538 (564)
T PRK08155 487 Y------GQRVF---AA--------------TYPGKINFMQIAAGFGLETCDL---NNEADPQAALQEAIN--RPGPALI 538 (564)
T ss_pred c------CCCee---ec--------------cCCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHh--CCCCEEE
Confidence 0 00000 00 00 0134466889999998866 689999999999987 5899999
Q ss_pred EEEEecc
Q 004968 363 HVVTEEN 369 (721)
Q Consensus 363 ~v~T~kg 369 (721)
+|.+...
T Consensus 539 eV~~~~~ 545 (564)
T PRK08155 539 HVRIDAE 545 (564)
T ss_pred EEEeCCC
Confidence 9999643
|
|
| >PRK07789 acetolactate synthase 1 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.8e-12 Score=152.13 Aligned_cols=180 Identities=16% Similarity=0.213 Sum_probs=118.1
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+..-.+...|...++ +++.++.|.| |+.|...++.-.. .+ .| +...+.|++|+++|+|+|
T Consensus 398 l~~~~~~~~l~~~l~-~~~ivv~d~G~~~~~~~~~~~~~~-----p~------~~-------~~~~~~G~mG~glpaaiG 458 (612)
T PRK07789 398 LAPQYVIERLGEIAG-PDAIYVAGVGQHQMWAAQFIDYEK-----PR------TW-------LNSGGLGTMGYAVPAAMG 458 (612)
T ss_pred cCHHHHHHHHHhhCC-CCeEEEECCcHHHHHHHHhcccCC-----CC------eE-------EcCCCcccccchhhhHHh
Confidence 444455555544432 4566778998 6556654433110 00 11 111245899999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+++|. ++++|||++|||+|+ |+.++|.+|+++++|+++||.||+. +|.+.. .++......
T Consensus 459 a~la~----p~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~lpv~ivV~NN~~-------------~g~i~~-~q~~~~~~~ 518 (612)
T PRK07789 459 AKVGR----PDKEVWAIDGDGCFQ--MTNQELATCAIEGIPIKVALINNGN-------------LGMVRQ-WQTLFYEER 518 (612)
T ss_pred hhccC----CCCcEEEEEcchhhh--ccHHHHHHHHHcCCCeEEEEEECCc-------------hHHHHH-HHHHhhCCC
Confidence 99984 589999999999996 9999999999999999999999986 343311 110000000
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVH 363 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~ 363 (721)
+ .+..... .....++...++++||+++..+ ++.++|.++|+++.+. .++|+||+
T Consensus 519 ~-------------~~~~~~~---------~~~~~~d~~~lA~a~G~~~~~V---~~~~eL~~al~~a~~~-~~~p~lIe 572 (612)
T PRK07789 519 Y-------------SNTDLHT---------HSHRIPDFVKLAEAYGCVGLRC---EREEDVDAVIEKARAI-NDRPVVID 572 (612)
T ss_pred c-------------ceeecCc---------CCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHhc-CCCcEEEE
Confidence 0 0000000 0000134567899999999866 8899999999999873 27899999
Q ss_pred EEEecc
Q 004968 364 VVTEEN 369 (721)
Q Consensus 364 v~T~kg 369 (721)
|.+.+.
T Consensus 573 v~i~~~ 578 (612)
T PRK07789 573 FVVGKD 578 (612)
T ss_pred EEECCc
Confidence 999653
|
|
| >PRK06466 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.1e-12 Score=150.57 Aligned_cols=175 Identities=17% Similarity=0.184 Sum_probs=116.2
Q ss_pred ccHHHHHHHHhcccCCCCcE-EEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDK-ILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGL 202 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~-iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~ 202 (721)
+....+...|...+ |+|. |+.|.| |..|...++.-++. ++|. ..-+.|++|+++|+|+
T Consensus 374 l~~~~~~~~l~~~l--~~~~iv~~d~g~~~~~~~~~~~~~~p-----~~~~-------------~~~~~gsmG~glpaAi 433 (574)
T PRK06466 374 IKPQQVVETLYEVT--NGDAYVTSDVGQHQMFAAQYYKFNKP-----NRWI-------------NSGGLGTMGFGLPAAM 433 (574)
T ss_pred cCHHHHHHHHHhhC--CCCeEEEECCcHHHHHHHHhccccCC-----CcEE-------------cCCCcchhhchHHHHH
Confidence 44445555554433 4454 557888 66676644331110 1111 1114489999999999
Q ss_pred HHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhch
Q 004968 203 GMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSK 282 (721)
Q Consensus 203 G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~ 282 (721)
|+++|. ++++||+++|||+|+ |+.++|.+|.++++|+++||.||+. +|.+..
T Consensus 434 Ga~la~----p~r~Vv~i~GDG~f~--m~~~eL~Ta~r~~lpv~ivV~NN~~-------------y~~i~~--------- 485 (574)
T PRK06466 434 GVKLAF----PDQDVACVTGEGSIQ--MNIQELSTCLQYGLPVKIINLNNGA-------------LGMVRQ--------- 485 (574)
T ss_pred HHHHhC----CCCeEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCCc-------------cHHHHH---------
Confidence 999985 589999999999997 8999999999999999999999985 343311
Q ss_pred HHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcc-cCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEE
Q 004968 283 SFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVL 361 (721)
Q Consensus 283 ~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~l 361 (721)
+++.... +... ...+ -.++...++++||.++..+ .+.++|.++|+++.+. .++|+|
T Consensus 486 -~q~~~~~--------~~~~----------~~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~al~~a~~~-~~~p~l 542 (574)
T PRK06466 486 -WQDMQYE--------GRHS----------HSYMESLPDFVKLAEAYGHVGIRI---TDLKDLKPKLEEAFAM-KDRLVF 542 (574)
T ss_pred -HHHHhcC--------Ccee----------ecCCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHhc-CCCcEE
Confidence 1100000 0000 0000 0134567889999998866 7899999999998762 278999
Q ss_pred EEEEEeccC
Q 004968 362 VHVVTEENR 370 (721)
Q Consensus 362 I~v~T~kg~ 370 (721)
|+|.+.+..
T Consensus 543 Iev~i~~~~ 551 (574)
T PRK06466 543 IDIYVDRSE 551 (574)
T ss_pred EEEEeCCcc
Confidence 999997543
|
|
| >CHL00099 ilvB acetohydroxyacid synthase large subunit | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.9e-12 Score=151.15 Aligned_cols=173 Identities=17% Similarity=0.227 Sum_probs=115.3
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+...|... .|++.++.|.| |+.|...++.-+ |. +.....+.|++|+++|+|+|
T Consensus 383 l~~~~~~~~l~~~--~~d~iv~~d~G~~~~~~~~~~~~~----------------~~---~~~~~~~~g~mG~glpaaiG 441 (585)
T CHL00099 383 LSPQEVINEISQL--APDAYFTTDVGQHQMWAAQFLKCK----------------PR---KWLSSAGLGTMGYGLPAAIG 441 (585)
T ss_pred cCHHHHHHHHHhh--CCCeEEEECCcHHHHHHHHhccCC----------------CC---cEEcCccccchhhhHHHHHH
Confidence 4444454445333 25667778999 555665333210 10 11111245899999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+++|. ++++||+++|||+|+ |+..+|.+|+++++|+++||.||+. +|.+.. .++......
T Consensus 442 aala~----p~~~vv~i~GDG~f~--m~~~eL~Ta~~~~l~~~~vV~NN~~-------------y~~i~~-~q~~~~~~~ 501 (585)
T CHL00099 442 AQIAH----PNELVICISGDASFQ--MNLQELGTIAQYNLPIKIIIINNKW-------------QGMVRQ-WQQAFYGER 501 (585)
T ss_pred HHHhC----CCCeEEEEEcchhhh--hhHHHHHHHHHhCCCeEEEEEECCc-------------chHHHH-HHHHhcCCC
Confidence 99985 488999999999997 9999999999999999999999985 333311 000000000
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVH 363 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~ 363 (721)
+ .+.. ...-.++...++++||+++..+ ++.++|.++++++.+ .++|.|||
T Consensus 502 ~-------------~~~~------------~~~~~~d~~~la~a~G~~~~~v---~~~~el~~al~~a~~--~~~p~lie 551 (585)
T CHL00099 502 Y-------------SHSN------------MEEGAPDFVKLAEAYGIKGLRI---KSRKDLKSSLKEALD--YDGPVLID 551 (585)
T ss_pred c-------------cccc------------CCCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHh--CCCCEEEE
Confidence 0 0000 0000134466889999998866 789999999999987 58999999
Q ss_pred EEEec
Q 004968 364 VVTEE 368 (721)
Q Consensus 364 v~T~k 368 (721)
|.+..
T Consensus 552 v~v~~ 556 (585)
T CHL00099 552 CQVIE 556 (585)
T ss_pred EEECC
Confidence 99964
|
|
| >PRK08617 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.3e-12 Score=149.67 Aligned_cols=128 Identities=16% Similarity=0.193 Sum_probs=95.8
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|.+|+++|+|+|+++|. ++++|||++|||+|+ |+..+|.+|..+++|+++||.||+. +|
T Consensus 412 ~~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~~vV~NN~~-------------~~ 472 (552)
T PRK08617 412 GMQTLGVALPWAIAAALVR----PGKKVVSVSGDGGFL--FSAMELETAVRLKLNIVHIIWNDGH-------------YN 472 (552)
T ss_pred ccccccccccHHHhhHhhc----CCCcEEEEEechHHh--hhHHHHHHHHHhCCCeEEEEEECCc-------------cc
Confidence 4588999999999999984 589999999999997 9999999999999999998888885 23
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~ 349 (721)
.+.. .+ ...| ....+. ++-.++...++++||+++..+ ++.++|.++|+
T Consensus 473 ~~~~-~~----~~~~----------~~~~~~--------------~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~al~ 520 (552)
T PRK08617 473 MVEF-QE----EMKY----------GRSSGV--------------DFGPVDFVKYAESFGAKGLRV---TSPDELEPVLR 520 (552)
T ss_pred hHHH-HH----Hhhc----------CCcccC--------------CCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHH
Confidence 2210 00 0000 000000 001234567889999999866 89999999999
Q ss_pred HHHhcCCCCCEEEEEEEeccC
Q 004968 350 EVASLGSMGPVLVHVVTEENR 370 (721)
Q Consensus 350 ~a~~~~~~~P~lI~v~T~kg~ 370 (721)
++.+ .++|++|+|.+.+..
T Consensus 521 ~a~~--~~~p~liev~~~~~~ 539 (552)
T PRK08617 521 EALA--TDGPVVIDIPVDYSD 539 (552)
T ss_pred HHHh--CCCcEEEEEEecccc
Confidence 9986 588999999997543
|
|
| >PRK07710 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.6e-12 Score=149.65 Aligned_cols=129 Identities=14% Similarity=0.180 Sum_probs=95.7
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|++|+++|+|+|+++|. ++++||+++|||+|+ |+..+|++|..+++|+++||.||+. +|
T Consensus 422 ~~g~mG~glpaAiGaala~----p~~~vv~i~GDGsf~--m~~~eL~ta~r~~lpi~ivV~NN~~-------------~~ 482 (571)
T PRK07710 422 GLGTMGFGLPAAIGAQLAK----PDETVVAIVGDGGFQ--MTLQELSVIKELSLPVKVVILNNEA-------------LG 482 (571)
T ss_pred CcccccchHHHHHHHHHhC----CCCcEEEEEcchHHh--hhHHHHHHHHHhCCCeEEEEEECch-------------HH
Confidence 4489999999999999984 588999999999997 8888999999999999999999985 34
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcc-cCCCccceeeeeCceEEeccCCCCHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al 348 (721)
.+.. +++. .... ...+ ... -.++...++++||+++..+ ++.++|.+++
T Consensus 483 ~i~~----------~~~~-~~~~---~~~~--------------~~~~~~~d~~~~A~a~G~~~~~v---~~~~el~~al 531 (571)
T PRK07710 483 MVRQ----------WQEE-FYNQ---RYSH--------------SLLSCQPDFVKLAEAYGIKGVRI---DDELEAKEQL 531 (571)
T ss_pred HHHH----------HHHH-HhCC---ccee--------------ccCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHH
Confidence 3311 0000 0000 0000 000 0134466889999999866 7899999999
Q ss_pred HHHHhcCCCCCEEEEEEEeccC
Q 004968 349 QEVASLGSMGPVLVHVVTEENR 370 (721)
Q Consensus 349 ~~a~~~~~~~P~lI~v~T~kg~ 370 (721)
+++.+ .++|++|+|.+....
T Consensus 532 ~~a~~--~~~p~lieV~vd~~~ 551 (571)
T PRK07710 532 QHAIE--LQEPVVIDCRVLQSE 551 (571)
T ss_pred HHHHh--CCCCEEEEEEecCcc
Confidence 99987 589999999997543
|
|
| >PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.1e-12 Score=150.16 Aligned_cols=173 Identities=14% Similarity=0.186 Sum_probs=115.8
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+...|...+ |++.++.|.| |..|...++.-++. ++| ...-+.|++|+++|+|+|
T Consensus 366 l~~~~~~~~l~~~~--p~~iiv~d~g~~~~~~~~~~~~~~~-----~~~-------------~~~~~~g~mG~glpaaiG 425 (561)
T PRK06048 366 IKPQYVIEQIYELC--PDAIIVTEVGQHQMWAAQYFKYKYP-----RTF-------------ITSGGLGTMGYGFPAAIG 425 (561)
T ss_pred cCHHHHHHHHHhhC--CCcEEEEcCcHHHHHHHHhcccCCC-----CeE-------------EeCCCccccccHHHHHHH
Confidence 34445555554433 5677888988 44455433321100 011 111234899999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+++|. ++++||+++|||+|+ |+..+|.+|.++++|+++||.||+. ++.+.. .++......
T Consensus 426 a~la~----p~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~l~i~~vV~NN~~-------------y~~i~~-~~~~~~~~~ 485 (561)
T PRK06048 426 AKVGK----PDKTVIDIAGDGSFQ--MNSQELATAVQNDIPVIVAILNNGY-------------LGMVRQ-WQELFYDKR 485 (561)
T ss_pred HHHhC----CCCcEEEEEeCchhh--ccHHHHHHHHHcCCCeEEEEEECCc-------------cHHHHH-HHHHHcCCc
Confidence 99984 589999999999997 8999999999999999999999985 333311 000000000
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcc-cCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLV 362 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI 362 (721)
| .+ ... -.++...++|+||+++.++ ++.++|.++|+++.+ .++|+||
T Consensus 486 ~-------------~~--------------~~~~~~~d~~~lA~a~G~~~~~v---~t~~el~~al~~a~~--~~~p~li 533 (561)
T PRK06048 486 Y-------------SH--------------TCIKGSVDFVKLAEAYGALGLRV---EKPSEVRPAIEEAVA--SDRPVVI 533 (561)
T ss_pred c-------------cc--------------cCCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHh--CCCCEEE
Confidence 0 00 000 1234567899999998866 789999999999987 5899999
Q ss_pred EEEEecc
Q 004968 363 HVVTEEN 369 (721)
Q Consensus 363 ~v~T~kg 369 (721)
++.+.+.
T Consensus 534 ev~~~~~ 540 (561)
T PRK06048 534 DFIVECE 540 (561)
T ss_pred EEEecCc
Confidence 9999653
|
|
| >PRK08199 thiamine pyrophosphate protein; Validated | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.8e-12 Score=147.93 Aligned_cols=173 Identities=14% Similarity=0.156 Sum_probs=114.5
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+...|...+. .++.|+.|.| |+.|.+.++.-+. . .++. ..+.|.+|+++|+|+|
T Consensus 367 ~~~~~~~~~l~~~l~-~~~ii~~d~g~~~~~~~~~~~~~~--------~---~~~~--------~~~~g~mG~glpaaiG 426 (557)
T PRK08199 367 VQLGEVMAWLRERLP-ADAIITNGAGNYATWLHRFFRFRR--------Y---RTQL--------APTSGSMGYGLPAAIA 426 (557)
T ss_pred cCHHHHHHHHHHhCC-CCeEEEECChHHHHHHHHhcCcCC--------C---CeEE--------CCCCccccchHHHHHH
Confidence 333444444544332 3455668888 6666664433110 0 0110 0134899999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+++|. ++++|||++|||+|+ |..++|.+|+.+++|+++||.||+. ++.+.... +. .
T Consensus 427 a~la~----p~~~vv~i~GDGsf~--~~~~el~ta~~~~l~i~~vv~nN~~-------------~~~~~~~~-~~----~ 482 (557)
T PRK08199 427 AKLLF----PERTVVAFAGDGCFL--MNGQELATAVQYGLPIIVIVVNNGM-------------YGTIRMHQ-ER----E 482 (557)
T ss_pred HHHhC----CCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCCc-------------chHHHHHH-HH----h
Confidence 99884 589999999999997 8899999999999999999999985 33331100 00 0
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVH 363 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~ 363 (721)
|.. ...+. +.-.++...++++||+++..+ ++.++|.++++++.+ .++|++|+
T Consensus 483 ~~~---------~~~~~--------------~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~~a~~--~~gp~li~ 534 (557)
T PRK08199 483 YPG---------RVSGT--------------DLTNPDFAALARAYGGHGETV---ERTEDFAPAFERALA--SGKPALIE 534 (557)
T ss_pred cCC---------ccccc--------------cCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHh--CCCCEEEE
Confidence 000 00000 011134567889999998755 689999999999987 58999999
Q ss_pred EEEecc
Q 004968 364 VVTEEN 369 (721)
Q Consensus 364 v~T~kg 369 (721)
|.|.+.
T Consensus 535 v~~~~~ 540 (557)
T PRK08199 535 IRIDPE 540 (557)
T ss_pred EEeCHH
Confidence 999754
|
|
| >TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.3e-12 Score=149.82 Aligned_cols=129 Identities=21% Similarity=0.268 Sum_probs=95.1
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|++|+++|+|+|+++|. ++++||+++|||+|+ |...+|.+|.++++|+++||.||+. ++
T Consensus 410 ~~g~mG~~l~aaiGa~la~----~~~~vv~~~GDG~f~--~~~~eL~ta~~~~l~~~~vv~NN~~-------------~~ 470 (558)
T TIGR00118 410 GLGTMGFGLPAAIGAKVAK----PESTVICITGDGSFQ--MNLQELSTAVQYDIPVKILILNNRY-------------LG 470 (558)
T ss_pred ccccccchhhHHHhhhhhC----CCCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEeCCc-------------hH
Confidence 3488999999999999884 588999999999997 7788999999999999999999986 23
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhccc-CCCccceeeeeCceEEeccCCCCHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMI-GPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al 348 (721)
.+.. .++......+ .. .... .++...++++||+++..+ ++.++|.+++
T Consensus 471 ~~~~-~q~~~~~~~~---------~~------------------~~~~~~~d~~~~a~a~G~~~~~v---~~~~~l~~al 519 (558)
T TIGR00118 471 MVRQ-WQELFYEERY---------SH------------------THMGSLPDFVKLAEAYGIKGIRI---EKPEELDEKL 519 (558)
T ss_pred HHHH-HHHHhcCCce---------ee------------------ccCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHH
Confidence 2211 0000000000 00 0000 134567889999998865 6799999999
Q ss_pred HHHHhcCCCCCEEEEEEEeccC
Q 004968 349 QEVASLGSMGPVLVHVVTEENR 370 (721)
Q Consensus 349 ~~a~~~~~~~P~lI~v~T~kg~ 370 (721)
+++.+ .++|+||||.+.+..
T Consensus 520 ~~a~~--~~~p~liev~~~~~~ 539 (558)
T TIGR00118 520 KEALS--SNEPVLLDVVVDKPE 539 (558)
T ss_pred HHHHh--CCCCEEEEEEeCCcc
Confidence 99987 589999999997543
|
Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed. |
| >TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.2e-12 Score=145.50 Aligned_cols=125 Identities=12% Similarity=0.084 Sum_probs=93.0
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|++|+++|+|+|+++|. +++||+++|||+|+ |+.++|.+|+++++|+++||.||+.. . .+
T Consensus 415 ~~gsmG~~lpaaiGaala~-----~~~vv~i~GDGsf~--m~~~EL~Ta~r~~l~v~~vV~NN~~~-~----------~~ 476 (554)
T TIGR03254 415 TWGVMGIGMGYAIAAAVET-----GKPVVALEGDSAFG--FSGMEVETICRYNLPVCVVIFNNGGI-Y----------RG 476 (554)
T ss_pred CCCcCCchHHHHHHHHhcC-----CCcEEEEEcCchhc--ccHHHHHHHHHcCCCEEEEEEeChhh-h----------hh
Confidence 3489999999999999972 78999999999997 99999999999999999999999841 0 00
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcc-cCCCccceeeeeCceEEeccCCCCHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al 348 (721)
. +...... ...+ .++ -.+++..++++||.++..+ .+.++|.++|
T Consensus 477 -~--------------~~~~~~~---~~~~--------------~~~~~~~df~~la~a~G~~~~~v---~~~~el~~al 521 (554)
T TIGR03254 477 -D--------------DVNVVGA---DPAP--------------TVLVHGARYDKMMKAFGGVGYNV---TTPDELKAAL 521 (554)
T ss_pred -h--------------hhhhcCC---CCCc--------------cccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHH
Confidence 0 0000000 0000 000 1234567889999998766 7899999999
Q ss_pred HHHHhcCCCCCEEEEEEEecc
Q 004968 349 QEVASLGSMGPVLVHVVTEEN 369 (721)
Q Consensus 349 ~~a~~~~~~~P~lI~v~T~kg 369 (721)
+++.+ .++|+||+|.+.+.
T Consensus 522 ~~a~~--~~~p~lIev~id~~ 540 (554)
T TIGR03254 522 NEALA--SGKPTLINAVIDPS 540 (554)
T ss_pred HHHHh--CCCCEEEEEEECCC
Confidence 99987 58999999999754
|
In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase. |
| >PRK09259 putative oxalyl-CoA decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.4e-12 Score=144.98 Aligned_cols=128 Identities=13% Similarity=0.060 Sum_probs=94.9
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|++|+++|+|+|+++|. +++||+++|||+|+ |+.++|.+|.++++|+++||.||+.. ..
T Consensus 422 ~~gsmG~glpaaiGa~la~-----~~~vv~i~GDG~f~--m~~~EL~Ta~r~~lpi~~vV~NN~~~------------~~ 482 (569)
T PRK09259 422 TWGVMGIGMGYAIAAAVET-----GKPVVAIEGDSAFG--FSGMEVETICRYNLPVTVVIFNNGGI------------YR 482 (569)
T ss_pred CCccccccHHHHHHHHhcC-----CCcEEEEecCcccc--ccHHHHHHHHHcCCCEEEEEEeChhH------------HH
Confidence 4589999999999999982 78899999999997 99999999999999999999999841 00
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcc-cCCCccceeeeeCceEEeccCCCCHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al 348 (721)
.. ++. + .. .. ...+ -.+ -.+++..++++||+++..+ .+.++|.+++
T Consensus 483 ~~----~~~-----~---~~-~~---~~~~--------------~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~al 529 (569)
T PRK09259 483 GD----DVN-----L---SG-AG---DPSP--------------TVLVHHARYDKMMEAFGGVGYNV---TTPDELRHAL 529 (569)
T ss_pred HH----HHH-----h---hc-CC---Cccc--------------cccCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHH
Confidence 00 000 0 00 00 0000 001 1245567899999998866 7899999999
Q ss_pred HHHHhcCCCCCEEEEEEEeccCC
Q 004968 349 QEVASLGSMGPVLVHVVTEENRR 371 (721)
Q Consensus 349 ~~a~~~~~~~P~lI~v~T~kg~G 371 (721)
+++.+ .++|+||+|.+.+..+
T Consensus 530 ~~a~~--~~~p~lIev~id~~~~ 550 (569)
T PRK09259 530 TEAIA--SGKPTLINVVIDPAAG 550 (569)
T ss_pred HHHHh--CCCCEEEEEEECCCCC
Confidence 99987 5899999999976543
|
|
| >PRK07524 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.1e-12 Score=149.44 Aligned_cols=128 Identities=18% Similarity=0.228 Sum_probs=96.2
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|.+|+++|+|+|+++|. ++++||+++|||+|+ |..++|.+|+++++|+++||.||+. +|
T Consensus 405 ~~g~mG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~--~~~~el~ta~~~~lpi~~vV~NN~~-------------~g 465 (535)
T PRK07524 405 GYGTLGYGLPAAIGAALGA----PERPVVCLVGDGGLQ--FTLPELASAVEADLPLIVLLWNNDG-------------YG 465 (535)
T ss_pred CcccccchHHHHHHHHHhC----CCCcEEEEEcchHHh--hhHHHHHHHHHhCCCeEEEEEECCc-------------hH
Confidence 4589999999999999984 689999999999996 8888999999999999999999975 33
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~ 349 (721)
.+.. +++... . ...+. +.-.++...++++||+++... .+.++|.++++
T Consensus 466 ~i~~----------~~~~~~----~-~~~~~--------------~~~~~d~~~~A~a~G~~~~~v---~~~~el~~al~ 513 (535)
T PRK07524 466 EIRR----------YMVARD----I-EPVGV--------------DPYTPDFIALARAFGCAAERV---ADLEQLQAALR 513 (535)
T ss_pred HHHH----------HHHHhc----C-Ccccc--------------CCCCCCHHHHHHHCCCcEEEe---CCHHHHHHHHH
Confidence 3311 000000 0 00000 011234567889999998755 68999999999
Q ss_pred HHHhcCCCCCEEEEEEEeccC
Q 004968 350 EVASLGSMGPVLVHVVTEENR 370 (721)
Q Consensus 350 ~a~~~~~~~P~lI~v~T~kg~ 370 (721)
++.+ .++|++|||++.+-.
T Consensus 514 ~a~~--~~~p~liev~~~~~~ 532 (535)
T PRK07524 514 AAFA--RPGPTLIEVDQACWF 532 (535)
T ss_pred HHHh--CCCCEEEEEECCccc
Confidence 9987 589999999997644
|
|
| >PRK07064 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.8e-12 Score=147.56 Aligned_cols=129 Identities=22% Similarity=0.267 Sum_probs=96.3
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhh
Q 004968 192 GHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINAL 271 (721)
Q Consensus 192 G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l 271 (721)
|++|+++|+|+|+++|. ++++||+++|||+|+ |...+|.+|.++++|+++||.||+. +|.+
T Consensus 405 g~mG~~lpaAiGa~lA~----p~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~-------------yg~~ 465 (544)
T PRK07064 405 GGIGQGLAMAIGAALAG----PGRKTVGLVGDGGLM--LNLGELATAVQENANMVIVLMNDGG-------------YGVI 465 (544)
T ss_pred CccccccchhhhhhhhC----cCCcEEEEEcchHhh--hhHHHHHHHHHhCCCeEEEEEeCCh-------------hHHH
Confidence 78999999999999984 588999999999997 8899999999999999999999985 3433
Q ss_pred hhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHH
Q 004968 272 SSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEV 351 (721)
Q Consensus 272 ~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a 351 (721)
.. +++.. | .. ...+ -++-.++...++++||+++..+ .+.++|.++++++
T Consensus 466 ~~-~~~~~----~-----~~----~~~~--------------~~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~al~~a 514 (544)
T PRK07064 466 RN-IQDAQ----Y-----GG----RRYY--------------VELHTPDFALLAASLGLPHWRV---TSADDFEAVLREA 514 (544)
T ss_pred HH-HHHHh----c-----CC----cccc--------------ccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHH
Confidence 11 11100 0 00 0000 0111245567899999998866 7899999999999
Q ss_pred HhcCCCCCEEEEEEEeccCCC
Q 004968 352 ASLGSMGPVLVHVVTEENRRA 372 (721)
Q Consensus 352 ~~~~~~~P~lI~v~T~kg~G~ 372 (721)
.+ .++|+||+|.+.....+
T Consensus 515 ~~--~~~p~lIeV~~~~~~~~ 533 (544)
T PRK07064 515 LA--KEGPVLVEVDMLSIGPF 533 (544)
T ss_pred Hc--CCCCEEEEEEccccccc
Confidence 87 58999999998743333
|
|
| >PRK08266 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.5e-12 Score=147.81 Aligned_cols=128 Identities=17% Similarity=0.271 Sum_probs=94.6
Q ss_pred cCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhh
Q 004968 191 AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINA 270 (721)
Q Consensus 191 ~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~ 270 (721)
.|++|+++|+|+|+++| .++++|||++|||+|+ |..++|.+|.++++|+++||.||+. +|.
T Consensus 401 ~GsmG~~lp~aiGa~la----~p~~~vv~v~GDG~f~--~~~~eL~ta~~~~lpv~ivv~NN~~-------------y~~ 461 (542)
T PRK08266 401 QGTLGYGFPTALGAKVA----NPDRPVVSITGDGGFM--FGVQELATAVQHNIGVVTVVFNNNA-------------YGN 461 (542)
T ss_pred CcccccHHHHHHHHHHh----CCCCcEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCCc-------------chH
Confidence 48999999999999887 4689999999999997 7789999999999999999999875 232
Q ss_pred hhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHH
Q 004968 271 LSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQE 350 (721)
Q Consensus 271 l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~ 350 (721)
+. ..++.. | ..+ ..+.+ .-.++...++++||+++..+ .+.++|.+++++
T Consensus 462 ~~-~~~~~~----~-----~~~----~~~~~--------------~~~~d~~~la~a~G~~~~~v---~~~~el~~al~~ 510 (542)
T PRK08266 462 VR-RDQKRR----F-----GGR----VVASD--------------LVNPDFVKLAESFGVAAFRV---DSPEELRAALEA 510 (542)
T ss_pred HH-HHHHHh----c-----CCC----cccCC--------------CCCCCHHHHHHHcCCeEEEe---CCHHHHHHHHHH
Confidence 21 011000 0 000 00000 01234567889999998855 679999999999
Q ss_pred HHhcCCCCCEEEEEEEeccC
Q 004968 351 VASLGSMGPVLVHVVTEENR 370 (721)
Q Consensus 351 a~~~~~~~P~lI~v~T~kg~ 370 (721)
+.+ .++|++|+|.|.++.
T Consensus 511 a~~--~~~p~liev~i~~~~ 528 (542)
T PRK08266 511 ALA--HGGPVLIEVPVPRGS 528 (542)
T ss_pred HHh--CCCcEEEEEEecCCC
Confidence 887 578999999998764
|
|
| >PRK06276 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.8e-12 Score=148.71 Aligned_cols=127 Identities=15% Similarity=0.232 Sum_probs=94.9
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|++|+++|+|+|+++|. ++++||+++|||+|+ |...+|.+|.++++|+++||.||+. +|
T Consensus 417 ~~gsmG~~lpaaiGa~la~----p~~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~~vV~NN~~-------------~g 477 (586)
T PRK06276 417 GLGTMGFGFPAAIGAKVAK----PDANVIAITGDGGFL--MNSQELATIAEYDIPVVICIFDNRT-------------LG 477 (586)
T ss_pred CccccccchhHHHhhhhhc----CCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCCc-------------hH
Confidence 3489999999999999984 578999999999997 8889999999999999999999985 33
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcc-cCCCccceeeeeCceEEeccCCCCHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al 348 (721)
.+.. .++...... ..+. +. ..++...++|++|+++..+ ++.++|.++|
T Consensus 478 ~~~~-~~~~~~~~~-------------~~~~--------------~~~~~~d~~~la~a~G~~~~~v---~~~~el~~al 526 (586)
T PRK06276 478 MVYQ-WQNLYYGKR-------------QSEV--------------HLGETPDFVKLAESYGVKADRV---EKPDEIKEAL 526 (586)
T ss_pred HHHH-HHHHHhCCC-------------cccc--------------cCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHH
Confidence 3211 101000000 0000 00 0134567889999998866 7899999999
Q ss_pred HHHHhcCCCCCEEEEEEEec
Q 004968 349 QEVASLGSMGPVLVHVVTEE 368 (721)
Q Consensus 349 ~~a~~~~~~~P~lI~v~T~k 368 (721)
+++.+ .++|.||+|.+..
T Consensus 527 ~~a~~--~~~p~lIeV~i~~ 544 (586)
T PRK06276 527 KEAIK--SGEPYLLDIIIDP 544 (586)
T ss_pred HHHHh--CCCCEEEEEEecc
Confidence 99987 5899999999964
|
|
| >PRK07525 sulfoacetaldehyde acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.2e-12 Score=147.64 Aligned_cols=178 Identities=12% Similarity=0.065 Sum_probs=117.1
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+..-.+...|...+. .++.++.|.| |+.|.+.++.-. ..+++- ...+.|++|+++|+|+|
T Consensus 386 i~~~~~~~~l~~~l~-~d~ivv~d~G~~~~~~~~~~~~~-----~p~~~~-------------~~~~~g~mG~glp~aiG 446 (588)
T PRK07525 386 MHPRQALREIQKALP-EDAIVSTDIGNNCSIANSYLRFE-----KGRKYL-------------APGSFGNCGYAFPAIIG 446 (588)
T ss_pred cCHHHHHHHHHHhCC-CCcEEEECCcccHHHHHHhcccC-----CCCeEE-------------ccccccccccHHHHHHH
Confidence 334445555554443 3556778998 677777544311 111111 11245899999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+++|. ++++||+++|||+|+ |+..+|.+|.++++|+++||.||+. +|.+.. .+.. .
T Consensus 447 a~la~----p~r~vv~i~GDG~f~--~~~~el~Ta~~~~lpv~ivV~NN~~-------------y~~~~~-~~~~----~ 502 (588)
T PRK07525 447 AKIAC----PDRPVVGFAGDGAWG--ISMNEVMTAVRHNWPVTAVVFRNYQ-------------WGAEKK-NQVD----F 502 (588)
T ss_pred HHHhC----CCCcEEEEEcCchHh--ccHHHHHHHHHhCCCeEEEEEeCch-------------hHHHHH-HHHH----H
Confidence 99984 589999999999997 7889999999999999999988875 343311 0000 0
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcc-cCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcC-CCCCEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLG-SMGPVL 361 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~-~~~P~l 361 (721)
|.. . ..+. ++ -.++...+++++|+++..+ .+.++|.++++++.+.. .++|+|
T Consensus 503 ~~~------~---~~~~--------------~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~al~~a~~~~~~~~p~l 556 (588)
T PRK07525 503 YNN------R---FVGT--------------ELDNNVSYAGIAEAMGAEGVVV---DTQEELGPALKRAIDAQNEGKTTV 556 (588)
T ss_pred hCC------C---cccc--------------cCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHhcCCCCCcEE
Confidence 000 0 0000 00 0134567889999998865 78999999999887631 258999
Q ss_pred EEEEEeccCC
Q 004968 362 VHVVTEENRR 371 (721)
Q Consensus 362 I~v~T~kg~G 371 (721)
|+|.+.+..|
T Consensus 557 Iev~~~~~~~ 566 (588)
T PRK07525 557 IEIMCNQELG 566 (588)
T ss_pred EEEEeccccC
Confidence 9999975544
|
|
| >TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.5e-12 Score=148.85 Aligned_cols=123 Identities=15% Similarity=0.161 Sum_probs=91.5
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|+||+++|+|+|+++|. ++++|||++|||+|+ |+.++|.+|.++++|+++||.||+.. |
T Consensus 402 ~~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~--m~~~EL~Ta~~~~lpi~~vV~NN~~y-------------~ 462 (539)
T TIGR03393 402 LWGSIGYTLPAAFGAQTAC----PNRRVILLIGDGSAQ--LTIQELGSMLRDKQHPIILVLNNEGY-------------T 462 (539)
T ss_pred hhhhhhhHHHHHHHHHhcC----CCCCeEEEEcCcHHH--hHHHHHHHHHHcCCCCEEEEEeCCce-------------E
Confidence 3489999999999999984 689999999999997 99999999999999999999999862 2
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCce----EEeccCCCCHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLY----YIGPVDGHNIEDLI 345 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~----~~g~vdGhd~~~l~ 345 (721)
.+.. ++.. ...|. ++-.+++..++++||.. +..+ .+.++|.
T Consensus 463 ~i~~-~~~~--~~~~~-----------------------------~~~~~df~~la~a~G~~~~~~~~~v---~~~~el~ 507 (539)
T TIGR03393 463 VERA-IHGA--EQRYN-----------------------------DIALWNWTHLPQALSLDPQSECWRV---SEAEQLA 507 (539)
T ss_pred EEEe-ecCC--CCCcC-----------------------------cCCCCCHHHHHHHcCCCCccceEEe---ccHHHHH
Confidence 2210 0000 00000 00013445677888874 5545 7899999
Q ss_pred HHHHHHHhcCCCCCEEEEEEEec
Q 004968 346 SVLQEVASLGSMGPVLVHVVTEE 368 (721)
Q Consensus 346 ~al~~a~~~~~~~P~lI~v~T~k 368 (721)
++++++.+ .++|+||+|.+.+
T Consensus 508 ~al~~a~~--~~~p~liev~i~~ 528 (539)
T TIGR03393 508 DVLEKVAA--HERLSLIEVVLPK 528 (539)
T ss_pred HHHHHHhc--cCCeEEEEEEcCc
Confidence 99999987 5899999999853
|
A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria. |
| >COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-10 Score=130.70 Aligned_cols=247 Identities=19% Similarity=0.199 Sum_probs=174.7
Q ss_pred CcEeeccccHHHHHHHHHHHHhCCCeeEEEecHhhHHHHHHHHHHHhhcCCcc---eEEEEcCCCCcCCCCCCcCcHHHH
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLP---VRFVITSAGLVGSDGPTQCGAFDI 519 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~tys~Fl~ra~dqi~~~~a~~~lp---Vv~v~~~~G~~G~dG~TH~~~~di 519 (721)
+-||+.+..|.-|..+|+|++..|.|.++..-...+.++.|.+++. ++.... |+++.+..|..+ -|...|-
T Consensus 58 ~vy~e~s~NEkvA~e~a~GA~~~G~ral~~mKhVGlNvAsDpl~s~-ay~Gv~GGlviv~aDDpg~~S-----Sqneqds 131 (640)
T COG4231 58 DVYFEWSLNEKVALETAAGASYAGVRALVTMKHVGLNVASDPLMSL-AYAGVTGGLVIVVADDPGMHS-----SQNEQDS 131 (640)
T ss_pred cEEEEecccHHHHHHHHHHhhhcCceeeEEecccccccchhhhhhh-hhcCccccEEEEEccCCCccc-----ccchhHh
Confidence 7899999999999999999999999999999989999999998665 554332 555556666522 2222333
Q ss_pred HHHccCCCcEEEeeCCHHHHHHHHHHHHHhC---CCCEEEEecCCCc------ccc----cCCCCC--CcceecCceEE-
Q 004968 520 TFMSCLPNMIVMAPSDEDELVDMVATVASID---DRPVCFRYPRGAI------VRT----DLPGYR--GIPIEIGKGKV- 583 (721)
Q Consensus 520 a~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~---~~P~~ir~~r~~~------~~~----~~p~~~--~~~~~~gk~~v- 583 (721)
.++...-.+-|+.|+|+||+.++++.+++.. ..|+++|...... ... +....+ ....+.+++..
T Consensus 132 r~y~~~a~iPvLeP~d~Qea~d~~~~afelSe~~~~pVilr~ttr~~h~~~~V~~~~~~~~~~~~~~~~~~k~~~r~V~~ 211 (640)
T COG4231 132 RAYGKFALIPVLEPSDPQEAYDYVKYAFELSEKSGLPVILRTTTRVSHSRGDVEVGLNRRPIVEPEDEFFIKDPGRYVRV 211 (640)
T ss_pred HHHHHhcCceeecCCChHHHHHHHHHHHHHHHHhCCCEEEEEEeeeeccceeEEeccccCCCCccccccccCCccceeec
Confidence 4555556677999999999999999999854 4599998754321 000 000000 01111111100
Q ss_pred ------------------------------EEeC--CcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHH
Q 004968 584 ------------------------------LVEG--KDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKL 631 (721)
Q Consensus 584 ------------------------------l~eG--~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~ 631 (721)
+.-+ .++-||+.|-....+++|.+. .|++..++.+-+.+||+.+.
T Consensus 212 p~~~~~~~~~~l~~k~~a~~~~~~~~~~n~v~~~~~~~lGII~~G~ay~yVkeAl~~---lgl~~~~lklg~~~Plp~~~ 288 (640)
T COG4231 212 PANALRHRHRKLLEKWEAAEEFINANPLNRVEGSDDAKLGIIASGIAYNYVKEALED---LGLDDELLKLGTPYPLPEQL 288 (640)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhhCcccccccCCCCceEEEecCccHHHHHHHHHH---cCCCceeEEecCCcCCCHHH
Confidence 0013 689999999999999888654 58999999999999999999
Q ss_pred HHHHhccCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhh
Q 004968 632 VRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 711 (721)
Q Consensus 632 i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 711 (721)
+++.++..+.|+||||.-. =+-.+|.+.+.+.+. ++...|-.+.+.+- ..-+|++.|...|.++++
T Consensus 289 i~~F~~g~~~vlVVEE~~P-~iE~qv~~~l~~~g~-----~v~v~GKd~gllP~--------~GElt~~~i~~ai~~~l~ 354 (640)
T COG4231 289 IENFLKGLERVLVVEEGEP-FIEEQVKALLYDAGL-----PVEVHGKDEGLLPM--------EGELTPEKIANAIAKFLG 354 (640)
T ss_pred HHHHHhcCcEEEEEecCCc-hHHHHHHHHHHhcCC-----ceEeecccccccCc--------ccccCHHHHHHHHHHHhC
Confidence 9999999999999999863 245566666665543 34444543444331 234899999999999886
Q ss_pred c
Q 004968 712 R 712 (721)
Q Consensus 712 ~ 712 (721)
+
T Consensus 355 ~ 355 (640)
T COG4231 355 K 355 (640)
T ss_pred c
Confidence 5
|
|
| >PRK07282 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.7e-12 Score=148.21 Aligned_cols=172 Identities=12% Similarity=0.136 Sum_probs=112.9
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+..+|...++ +++.++.|.| |..|....+.-.+ .+++ ...-+.|++|+++|+|+|
T Consensus 369 l~~~~~~~~l~~~~~-~~~ivv~d~G~~~~~~~~~~~~~~-----~~~~-------------~~~~~~g~mG~glpaaiG 429 (566)
T PRK07282 369 VQPQAVIERIGELTN-GDAIVVTDVGQHQMWAAQYYPYQN-----ERQL-------------VTSGGLGTMGFGIPAAIG 429 (566)
T ss_pred cCHHHHHHHHHhhcC-CCeEEEECCcHHHHHHHHhcccCC-----CCcE-------------ecCCccccccchhhHhhe
Confidence 444455555544433 4566778988 5556553222100 0011 111244899999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+++|. ++++||+++|||+|+ |+.++|.+|.++++|+++||.||+. ++.+..
T Consensus 430 a~lA~----p~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~l~i~~vV~NN~~-------------y~~i~~---------- 480 (566)
T PRK07282 430 AKIAN----PDKEVILFVGDGGFQ--MTNQELAILNIYKVPIKVVMLNNHS-------------LGMVRQ---------- 480 (566)
T ss_pred eheec----CCCcEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCCC-------------chHHHH----------
Confidence 99984 589999999999997 9999999999999999999999985 333310
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcc-cCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLV 362 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI 362 (721)
+++..... .+.. ..+ ..++...++|+||+++.++ .+.++|.++++.+ . .++|+||
T Consensus 481 ~q~~~~~~------~~~~------------~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~al~~~-~--~~~p~lI 536 (566)
T PRK07282 481 WQESFYEG------RTSE------------SVFDTLPDFQLMAQAYGIKHYKF---DNPETLAQDLEVI-T--EDVPMLI 536 (566)
T ss_pred HHHHHhCC------Cccc------------ccCCCCCCHHHHHHHCCCEEEEE---CCHHHHHHHHHHh-c--CCCCEEE
Confidence 11000000 0000 000 0234567899999999866 7899999999754 3 4899999
Q ss_pred EEEEec
Q 004968 363 HVVTEE 368 (721)
Q Consensus 363 ~v~T~k 368 (721)
+|.+.+
T Consensus 537 eV~v~~ 542 (566)
T PRK07282 537 EVDISR 542 (566)
T ss_pred EEEeCC
Confidence 999965
|
|
| >PRK07092 benzoylformate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-11 Score=142.20 Aligned_cols=170 Identities=18% Similarity=0.243 Sum_probs=111.4
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+...|...+. +++.++.|.| |..|....+.-+. .+ .| +. ...|++|+++|+|+|
T Consensus 359 l~~~~~~~~l~~~l~-~~~ivv~d~g~~~~~~~~~~~~~~--------~~---~~-------~~-~~~g~mG~~lp~aiG 418 (530)
T PRK07092 359 LSVAFVLQTLAALRP-ADAIVVEEAPSTRPAMQEHLPMRR--------QG---SF-------YT-MASGGLGYGLPAAVG 418 (530)
T ss_pred cCHHHHHHHHHHhCC-CCeEEEeCCCccHHHHHHhcCcCC--------CC---ce-------Ec-cCCCcccchHHHHHH
Confidence 334445555544443 4566678988 5556553332110 00 01 00 124889999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+++|. ++++|||++|||+++ |..++|++|+++++|+++||.||+. +|.+. .+++..
T Consensus 419 a~la~----p~~~vv~i~GDG~f~--~~~~eL~ta~~~~lp~~~vv~NN~~-------------~~~~~-~~~~~~---- 474 (530)
T PRK07092 419 VALAQ----PGRRVIGLIGDGSAM--YSIQALWSAAQLKLPVTFVILNNGR-------------YGALR-WFAPVF---- 474 (530)
T ss_pred HHHhC----CCCeEEEEEeCchHh--hhHHHHHHHHHhCCCcEEEEEeChH-------------HHHHH-HHHHhh----
Confidence 99984 588999999999998 6779999999999999999999984 22221 000000
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVH 363 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~ 363 (721)
.. ....+. ..-..+...++++||+++..+ ++.++|.++++++.+ .++|++|+
T Consensus 475 -------~~--~~~~~~--------------~~~~~d~~~~a~~~G~~~~~v---~~~~~l~~al~~a~~--~~~p~lie 526 (530)
T PRK07092 475 -------GV--RDVPGL--------------DLPGLDFVALARGYGCEAVRV---SDAAELADALARALA--ADGPVLVE 526 (530)
T ss_pred -------CC--CCCCCC--------------CCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHh--CCCCEEEE
Confidence 00 000000 001133466889999998855 579999999999987 58999999
Q ss_pred EEE
Q 004968 364 VVT 366 (721)
Q Consensus 364 v~T 366 (721)
+.|
T Consensus 527 v~~ 529 (530)
T PRK07092 527 VEV 529 (530)
T ss_pred EEc
Confidence 987
|
|
| >PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-11 Score=130.69 Aligned_cols=147 Identities=18% Similarity=0.248 Sum_probs=110.8
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCC-CeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcch
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKR-ECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSI 268 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~-~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~ 268 (721)
....+|.+++.|.|+++|.+.++++ ..||+++|||++..+- +|+|++|+.++.|+++||.||++.+....+.+.+.+.
T Consensus 67 i~~~~G~~~~~A~G~a~A~~~~~~~~~~Vva~~GDG~~~~~g-~~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ 145 (300)
T PRK11864 67 LHTAFAATAAVASGIEEALKARGEKGVIVVGWAGDGGTADIG-FQALSGAAERNHDILYIMYDNEAYMNTGIQRSSSTPY 145 (300)
T ss_pred eeehhhChHHHHHHHHHHHHhhCCCCcEEEEEEccCcccccc-HHHHHHHHHhCcCEEEEEECCeeeecCCCCCCCCCcC
Confidence 4578899999999999999887664 5677799999987655 4999999999999999999999865555556777788
Q ss_pred hhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHH
Q 004968 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (721)
Q Consensus 269 g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al 348 (721)
|+..++- ..|..... + +...++.++|..|+..++-.++.++.+++
T Consensus 146 ga~t~ts---------------------p~G~~~~k---------k-----di~~i~~a~g~~yVA~~~~~~~~~~~~~i 190 (300)
T PRK11864 146 GAWTTTT---------------------PGGKREHK---------K-----PVPDIMAAHKVPYVATASIAYPEDFIRKL 190 (300)
T ss_pred CCccccC---------------------CCCCcCCC---------C-----CHHHHHHHcCCCEEEEEeCCCHHHHHHHH
Confidence 8653211 01111000 0 11346678899888888888999999999
Q ss_pred HHHHhcCCCCCEEEEEEEe--ccCCCcc
Q 004968 349 QEVASLGSMGPVLVHVVTE--ENRRAED 374 (721)
Q Consensus 349 ~~a~~~~~~~P~lI~v~T~--kg~G~~~ 374 (721)
++|.+ .+||.+|++.+. .++++.+
T Consensus 191 ~~A~~--~~Gps~I~~~spC~~~~~~~~ 216 (300)
T PRK11864 191 KKAKE--IRGFKFIHLLAPCPPGWRFDP 216 (300)
T ss_pred HHHHh--CCCCEEEEEeCCCCCCCCcCh
Confidence 99998 589999999875 3444433
|
|
| >cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.6e-11 Score=115.58 Aligned_cols=126 Identities=25% Similarity=0.336 Sum_probs=101.7
Q ss_pred ChHHHHHhCCCcEeeccccHHHHHHHHHHHHhCCCeeEEEe-cHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCC
Q 004968 433 SLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGP 511 (721)
Q Consensus 433 ~l~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~t-ys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~ 511 (721)
.+-+...+.|++.+..++.|++++++|.|+|..|.+|++.+ +.+|+.++++++. .++..++||+++....|..+.++.
T Consensus 25 ~l~~~~~~~~~~~~~~~~~E~~a~~~A~G~a~~~~~~v~~~~~gpg~~~~~~~l~-~a~~~~~Pvl~i~~~~~~~~~~~~ 103 (154)
T cd06586 25 SLLDALREGDKRIIDTVIHELGAAGAAAGYARAGGPPVVIVTSGTGLLNAINGLA-DAAAEHLPVVFLIGARGISAQAKQ 103 (154)
T ss_pred HHHHHHhccCCceEEeeCCHHHHHHHHHHHHHhhCCEEEEEcCCCcHHHHHHHHH-HHHhcCCCEEEEeCCCChhhhccC
Confidence 34333345689999999999999999999999987888876 5999999999996 778899999999977776555678
Q ss_pred CcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHH---hCCCCEEEEecC
Q 004968 512 TQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVAS---IDDRPVCFRYPR 560 (721)
Q Consensus 512 TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~---~~~~P~~ir~~r 560 (721)
+||..+++.+++.+|++.+..|+..++. ..+..|+. ...+|++|++|+
T Consensus 104 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~a~~~~gPv~l~ip~ 154 (154)
T cd06586 104 TFQSMFDLGMYRSIPEANISSPSPAELP-AGIDHAIRTAYASQGPVVVRLPR 154 (154)
T ss_pred cccccCHHHHHHHhhheEEEeCCHHHHH-HHHHHHHHHHhcCCCCEEEEccC
Confidence 8999999999999999988887775444 44444444 236799998874
|
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca |
| >cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.5e-11 Score=127.37 Aligned_cols=141 Identities=19% Similarity=0.259 Sum_probs=91.8
Q ss_pred CcCCCcchHHHHHHHHHHHHH-cCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcch
Q 004968 190 NAGHGCNSVSAGLGMAVARDI-KGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSI 268 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l-~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~ 268 (721)
+.|.+|+++|+|+|+++|..- ..++++|||++|||++.. |...++.++.++++|+++||.||+...+-..+.......
T Consensus 62 ~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~-~g~~~l~ta~~~~l~i~ivVlNN~~yg~~~~q~~~~~~~ 140 (237)
T cd02018 62 DANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYD-IGFGALSHSLFRGEDITVIVLDNEVYSNTGGQRSGATPL 140 (237)
T ss_pred CHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHh-ccHHHHHHHHHcCCCeEEEEECCccccCCCCCCCCCCcC
Confidence 458999999999999887211 135899999999999741 356688889999999999999998632211010000000
Q ss_pred hhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHH
Q 004968 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (721)
Q Consensus 269 g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al 348 (721)
|.. .. .. ..+ ...-.++...+++++|+.+...+.-.++++|.++|
T Consensus 141 g~~-------~~-------------~~-~~~--------------~~~~~~D~~~iA~a~G~~~~~~~~v~~~~~l~~al 185 (237)
T cd02018 141 GAD-------SK-------------MA-PAG--------------KKEDKKDLVLIAATHGCVYVARLSPALKKHFLKVV 185 (237)
T ss_pred CCc-------cc-------------cc-CCC--------------CcCCCCCHHHHHHHCCCCEEEEEccCCHHHHHHHH
Confidence 000 00 00 000 00011345678899999998633336799999999
Q ss_pred HHHHhcCCCCCEEEEEEEe
Q 004968 349 QEVASLGSMGPVLVHVVTE 367 (721)
Q Consensus 349 ~~a~~~~~~~P~lI~v~T~ 367 (721)
+++.+ +.++|++|++.+.
T Consensus 186 ~~al~-~~~GP~lI~v~i~ 203 (237)
T cd02018 186 KEAIS-RTDGPTFIHAYTP 203 (237)
T ss_pred HHHHh-cCCCCEEEEEeCC
Confidence 99975 1388999999974
|
Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors. |
| >PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.6e-11 Score=129.08 Aligned_cols=134 Identities=15% Similarity=0.157 Sum_probs=93.0
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhh
Q 004968 192 GHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINAL 271 (721)
Q Consensus 192 G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l 271 (721)
|.+|.++|+|+|+++| .++++||++.|||++. ++...+|.+|+++++|+++||.||+..++..++.+...+.|..
T Consensus 70 g~mG~alpaAiGaklA----~pd~~VV~i~GDG~~~-~mg~~eL~tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~~ 144 (301)
T PRK05778 70 TLHGRAIAFATGAKLA----NPDLEVIVVGGDGDLA-SIGGGHFIHAGRRNIDITVIVENNGIYGLTKGQASPTTPEGSK 144 (301)
T ss_pred hhhccHHHHHHHHHHH----CCCCcEEEEeCccHHH-hccHHHHHHHHHHCCCcEEEEEeCchhhcccCcccCCcCCCcc
Confidence 6789999999999998 4689999999999973 3667899999999999999999998643322221111111110
Q ss_pred hhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHH
Q 004968 272 SSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEV 351 (721)
Q Consensus 272 ~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a 351 (721)
.. ....|.. ....+...+++++|+.++....-.+.++|.++++++
T Consensus 145 ~~---------------------~~~~g~~--------------~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A 189 (301)
T PRK05778 145 TK---------------------TAPYGNI--------------EPPIDPCALALAAGATFVARSFAGDVKQLVELIKKA 189 (301)
T ss_pred cc---------------------cccCCCc--------------CCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHHH
Confidence 00 0000000 001234567889999886332337899999999999
Q ss_pred HhcCCCCCEEEEEEEe
Q 004968 352 ASLGSMGPVLVHVVTE 367 (721)
Q Consensus 352 ~~~~~~~P~lI~v~T~ 367 (721)
.+ .++|.+|+|.+.
T Consensus 190 ~~--~~GpalIeV~~~ 203 (301)
T PRK05778 190 IS--HKGFAFIDVLSP 203 (301)
T ss_pred Hh--CCCCEEEEEcCC
Confidence 87 589999998774
|
|
| >PLN02573 pyruvate decarboxylase | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.7e-12 Score=146.23 Aligned_cols=123 Identities=15% Similarity=0.146 Sum_probs=91.8
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|++|+++|+|+|+++|. ++++||+++|||+|+ |+.++|.+|+++++|+++||.||+.. |
T Consensus 426 ~~gsmG~glpaaiGa~lA~----p~r~vv~i~GDG~f~--m~~~EL~Ta~r~~lpvv~vV~NN~~y-------------g 486 (578)
T PLN02573 426 QYGSIGWSVGATLGYAQAA----PDKRVIACIGDGSFQ--VTAQDVSTMIRCGQKSIIFLINNGGY-------------T 486 (578)
T ss_pred chhhhhhhhhHHHHHHHhC----CCCceEEEEeccHHH--hHHHHHHHHHHcCCCCEEEEEeCCce-------------e
Confidence 4589999999999999985 589999999999996 99999999999999999999999863 3
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeC-----ceEEeccCCCCHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELG-----LYYIGPVDGHNIEDL 344 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G-----~~~~g~vdGhd~~~l 344 (721)
.+.. . + ...| . ..-.++...++++|| +++..+ .+.++|
T Consensus 487 ~~~~-~---~-~~~~-----------~------------------~~~~~d~~~lA~a~G~~~g~~~~~~V---~~~~eL 529 (578)
T PLN02573 487 IEVE-I---H-DGPY-----------N------------------VIKNWNYTGLVDAIHNGEGKCWTAKV---RTEEEL 529 (578)
T ss_pred EEEe-e---c-ccCc-----------c------------------ccCCCCHHHHHHHhcCcCCceeEEEe---cCHHHH
Confidence 2210 0 0 0000 0 000123456777875 777756 689999
Q ss_pred HHHHHHHHhcCCCCCEEEEEEEec
Q 004968 345 ISVLQEVASLGSMGPVLVHVVTEE 368 (721)
Q Consensus 345 ~~al~~a~~~~~~~P~lI~v~T~k 368 (721)
.++++++.+...++|+||+|.+.+
T Consensus 530 ~~al~~a~~~~~~~p~lieV~v~~ 553 (578)
T PLN02573 530 IEAIATATGEKKDCLCFIEVIVHK 553 (578)
T ss_pred HHHHHHHHhhCCCCcEEEEEEcCc
Confidence 999999874114889999999853
|
|
| >PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.8e-11 Score=127.33 Aligned_cols=134 Identities=13% Similarity=0.111 Sum_probs=94.4
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhh
Q 004968 192 GHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINAL 271 (721)
Q Consensus 192 G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l 271 (721)
|.+|.++|+|+|+++| +++++||+++|||++. .+..++|.+|+++++|+++||.||+..++..++.+...+.|..
T Consensus 60 ~~mG~alp~AiGaklA----~pd~~VVai~GDG~~~-~iG~~eL~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~ 134 (280)
T PRK11869 60 TLHGRAIPAATAVKAT----NPELTVIAEGGDGDMY-AEGGNHLIHAIRRNPDITVLVHNNQVYGLTKGQASPTTLKGFK 134 (280)
T ss_pred cccccHHHHHHHHHHH----CCCCcEEEEECchHHh-hCcHHHHHHHHHhCcCcEEEEEECHHHhhhcceecCCCCCCcc
Confidence 5589999999999888 4689999999999975 2337899999999999999999998643322222222222211
Q ss_pred hhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHH
Q 004968 272 SSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEV 351 (721)
Q Consensus 272 ~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a 351 (721)
.. ....|.. ....+...+++++|..++...+-.++++|.++++++
T Consensus 135 ~~---------------------~~p~g~~--------------~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~~A 179 (280)
T PRK11869 135 TP---------------------TQPWGVF--------------EEPFNPIALAIALDASFVARTFSGDIEETKEILKEA 179 (280)
T ss_pred cc---------------------cCCCCcc--------------CCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHH
Confidence 00 0000000 001234568899999988755557899999999999
Q ss_pred HhcCCCCCEEEEEEEe
Q 004968 352 ASLGSMGPVLVHVVTE 367 (721)
Q Consensus 352 ~~~~~~~P~lI~v~T~ 367 (721)
.+ .++|.+|++.+.
T Consensus 180 l~--~~Gp~lIeV~~p 193 (280)
T PRK11869 180 IK--HKGLAIVDIFQP 193 (280)
T ss_pred Hh--CCCCEEEEEECC
Confidence 98 589999999874
|
|
| >PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.2e-11 Score=128.33 Aligned_cols=135 Identities=15% Similarity=0.107 Sum_probs=89.5
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhh
Q 004968 192 GHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINAL 271 (721)
Q Consensus 192 G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l 271 (721)
+.+|.++|+|+|+++|. ++++||+++|||+++. +.-.++.+|+++++|+++||.||+...+-.++++...+.|..
T Consensus 68 ~~~G~alPaAiGaklA~----Pdr~VV~i~GDG~f~~-~g~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~ 142 (277)
T PRK09628 68 TTHGRAVAYATGIKLAN----PDKHVIVVSGDGDGLA-IGGNHTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKGMW 142 (277)
T ss_pred eccccHHHHHHHHHHHC----CCCeEEEEECchHHHH-hhHHHHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCCce
Confidence 46789999999999984 6899999999999852 455678889999999999999998632211111111111100
Q ss_pred hhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHH
Q 004968 272 SSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEV 351 (721)
Q Consensus 272 ~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a 351 (721)
. .....+.. ....+...+++++|+.++....-.++++|.++++++
T Consensus 143 ~---------------------~~~~~g~~--------------~~~~D~~~lA~a~G~~~va~~~v~~~~el~~al~~A 187 (277)
T PRK09628 143 T---------------------VTAQYGNI--------------DPTFDACKLATAAGASFVARESVIDPQKLEKLLVKG 187 (277)
T ss_pred e---------------------eeccCCCc--------------CCCCCHHHHHHHCCCceEEEEccCCHHHHHHHHHHH
Confidence 0 00000000 000133567889999874111226899999999999
Q ss_pred HhcCCCCCEEEEEEEec
Q 004968 352 ASLGSMGPVLVHVVTEE 368 (721)
Q Consensus 352 ~~~~~~~P~lI~v~T~k 368 (721)
.+ .++|++|+|.+.-
T Consensus 188 l~--~~Gp~lIeV~~~c 202 (277)
T PRK09628 188 FS--HKGFSFFDVFSNC 202 (277)
T ss_pred Hh--CCCCEEEEEcCCC
Confidence 88 5899999998854
|
|
| >PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.3e-11 Score=139.48 Aligned_cols=128 Identities=14% Similarity=0.153 Sum_probs=91.7
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
|.|.+|+++|+|+|+++| . +++|||++|||+|+ |...+|.+|+++++|+++||.||+...+ ++
T Consensus 423 g~~~~G~~lpaaiGaala-~----~~~vv~i~GDGsf~--~~~~eL~Ta~r~~l~i~ivVlNN~g~~~----------~~ 485 (568)
T PRK07449 423 GASGIDGLLSTAAGVARA-S----AKPTVALIGDLSFL--HDLNGLLLLKQVPAPLTIVVVNNNGGGI----------FS 485 (568)
T ss_pred CccchhhHHHHHHHHHhc-C----CCCEEEEechHHhh--cCcHHHHhhcccCCCeEEEEEECCCCcc----------cc
Confidence 447799999999999988 3 78899999999997 7778999999999999999999985211 11
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~ 349 (721)
.+ ...+. ..|.. ++....-.++...++++||+.+..+ ++.++|.++++
T Consensus 486 ~~----~~~~~-~~~~~------------------------~~~~~~~~~df~~lA~a~G~~~~~V---~~~~eL~~al~ 533 (568)
T PRK07449 486 LL----PQPEE-EPVFE------------------------RFFGTPHGVDFAHAAAMYGLEYHRP---ETWAELEEALA 533 (568)
T ss_pred CC----CCCCC-cchhh------------------------HhhcCCCCCCHHHHHHHcCCCccCC---CCHHHHHHHHH
Confidence 10 00000 00000 0000000134567889999998755 78999999999
Q ss_pred HHHhcCCCCCEEEEEEEec
Q 004968 350 EVASLGSMGPVLVHVVTEE 368 (721)
Q Consensus 350 ~a~~~~~~~P~lI~v~T~k 368 (721)
++.+ .++|++|+|.+.+
T Consensus 534 ~a~~--~~~p~lIev~id~ 550 (568)
T PRK07449 534 DALP--TPGLTVIEVKTNR 550 (568)
T ss_pred HHhc--CCCCEEEEEeCCh
Confidence 9986 5899999999954
|
|
| >TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.2e-11 Score=139.33 Aligned_cols=122 Identities=16% Similarity=0.126 Sum_probs=90.7
Q ss_pred cCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhh
Q 004968 191 AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINA 270 (721)
Q Consensus 191 ~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~ 270 (721)
.|++|+++|+|+|+++|. ++++|+++|||+|+ |+.++|.+|.++++|+++||.||+.. |.
T Consensus 402 ~g~mG~glpaaiGa~lA~-----~~r~v~i~GDG~f~--m~~~EL~Ta~r~~lpv~~vV~NN~~y-------------~~ 461 (535)
T TIGR03394 402 YAGMGFGVPAGIGAQCTS-----GKRILTLVGDGAFQ--MTGWELGNCRRLGIDPIVILFNNASW-------------EM 461 (535)
T ss_pred cchhhhHHHHHHHHHhCC-----CCCeEEEEeChHHH--hHHHHHHHHHHcCCCcEEEEEECCcc-------------ce
Confidence 489999999999999984 35568899999996 99999999999999999999999852 22
Q ss_pred hhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHH
Q 004968 271 LSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQE 350 (721)
Q Consensus 271 l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~ 350 (721)
+.. .++. ..| . ++-.++...++++||.++..+ ++.++|.+++++
T Consensus 462 ~~~-~~~~---~~~---------------~--------------~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~al~~ 505 (535)
T TIGR03394 462 LRV-FQPE---SAF---------------N--------------DLDDWRFADMAAGMGGDGVRV---RTRAELAAALDK 505 (535)
T ss_pred eeh-hccC---CCc---------------c--------------cCCCCCHHHHHHHcCCCceEe---CCHHHHHHHHHH
Confidence 210 0000 000 0 000134466889999998866 789999999999
Q ss_pred HHhcCCCCCEEEEEEEecc
Q 004968 351 VASLGSMGPVLVHVVTEEN 369 (721)
Q Consensus 351 a~~~~~~~P~lI~v~T~kg 369 (721)
+.+. .++|++|+|.+.+.
T Consensus 506 a~~~-~~~p~lIev~i~~~ 523 (535)
T TIGR03394 506 AFAT-RGRFQLIEAMLPRG 523 (535)
T ss_pred HHhc-CCCeEEEEEECCcc
Confidence 8763 35589999998653
|
A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase. |
| >PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.9e-11 Score=127.25 Aligned_cols=133 Identities=13% Similarity=0.117 Sum_probs=96.2
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCC-CcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhh
Q 004968 192 GHGCNSVSAGLGMAVARDIKGKRECIVTVISNG-TTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINA 270 (721)
Q Consensus 192 G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDG-al~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~ 270 (721)
|.+|.++|+|+|+++| .++++||+++||| ++. +..++|.+|++++.|+++||.||+...+..++.+...+.|.
T Consensus 59 ~~~G~alp~A~GaklA----~Pd~~VV~i~GDG~~f~--ig~~eL~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~~g~ 132 (279)
T PRK11866 59 GIHGRVLPIATGVKWA----NPKLTVIGYGGDGDGYG--IGLGHLPHAARRNVDITYIVSNNQVYGLTTGQASPTTPRGV 132 (279)
T ss_pred cccccHHHHHHHHHHH----CCCCcEEEEECChHHHH--ccHHHHHHHHHHCcCcEEEEEEChhhhhhcccccCCCCCCc
Confidence 6679999999999998 4589999999999 575 77789999999999999999999864443333333333322
Q ss_pred hhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHH
Q 004968 271 LSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQE 350 (721)
Q Consensus 271 l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~ 350 (721)
... ....|+... ..+...+++++|..++......++++|.+++++
T Consensus 133 ~t~---------------------~t~~g~~~~--------------~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l~~ 177 (279)
T PRK11866 133 KTK---------------------TTPDGNIEE--------------PFNPIALALAAGATFVARGFSGDVKHLKEIIKE 177 (279)
T ss_pred eee---------------------ccCCCCCCC--------------CCCHHHHHHHCCCCEEEEEcCCCHHHHHHHHHH
Confidence 100 000011000 012346788999988766666899999999999
Q ss_pred HHhcCCCCCEEEEEEEe
Q 004968 351 VASLGSMGPVLVHVVTE 367 (721)
Q Consensus 351 a~~~~~~~P~lI~v~T~ 367 (721)
+.+ .++|.+|++.+.
T Consensus 178 Al~--~~Gps~I~v~~p 192 (279)
T PRK11866 178 AIK--HKGFSFIDVLSP 192 (279)
T ss_pred HHh--CCCCEEEEEeCC
Confidence 998 589999999874
|
|
| >PRK08327 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.20 E-value=9e-11 Score=136.73 Aligned_cols=137 Identities=15% Similarity=0.154 Sum_probs=90.8
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|++|+++|+|+|+++| .++++||+++|||+|+-+..-++|++|+++++|+++||.||+.. |
T Consensus 428 ~~gsmG~~lp~aiGa~la----~p~~~vv~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~y-------------g 490 (569)
T PRK08327 428 SAGGLGWALGAALGAKLA----TPDRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGW-------------L 490 (569)
T ss_pred CCCCCCcchHHHHHHhhc----CCCCeEEEEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCccc-------------c
Confidence 458999999999999987 46899999999999975444457999999999999999999752 2
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcc-cCCCccceeeeeCceEEeccCCCCHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al 348 (721)
.+.. .++......+... ..... ...+ -.++...++|+||+.+..+ ++.++|.+++
T Consensus 491 ~~~~-~~~~~~~~~~~~~-------~~~~~-------------~~~~~~~~d~~~la~a~G~~~~~v---~~~~el~~al 546 (569)
T PRK08327 491 AVKE-AVLEVYPEGYAAR-------KGTFP-------------GTDFDPRPDFAKIAEAFGGYGERV---EDPEELKGAL 546 (569)
T ss_pred cchh-HHhhhCccccccc-------ccccc-------------cccCCCCCCHHHHHHhCCCCceEe---CCHHHHHHHH
Confidence 2110 0000000000000 00000 0000 0134467889999988755 6899999999
Q ss_pred HHHHhc--CCCCCEEEEEEEe
Q 004968 349 QEVASL--GSMGPVLVHVVTE 367 (721)
Q Consensus 349 ~~a~~~--~~~~P~lI~v~T~ 367 (721)
+++.+. +.++|++|||.+.
T Consensus 547 ~~a~~~~~~~~gp~liev~v~ 567 (569)
T PRK08327 547 RRALAAVRKGRRSAVLDVIVD 567 (569)
T ss_pred HHHHHHHhcCCCcEEEEEEcc
Confidence 888652 1267999999873
|
|
| >PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.5e-11 Score=124.58 Aligned_cols=133 Identities=13% Similarity=0.120 Sum_probs=90.6
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCC-cccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhh
Q 004968 192 GHGCNSVSAGLGMAVARDIKGKRECIVTVISNGT-TMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINA 270 (721)
Q Consensus 192 G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGa-l~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~ 270 (721)
|.+|.++|+|+|+++| .++++||+++|||+ ++ +...+|.+|+++++|+++||.||+..++..++.+...+.|.
T Consensus 69 g~mG~alpaAiGaklA----~Pd~~VV~i~GDG~~f~--mg~~eL~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~ 142 (286)
T PRK11867 69 TIHGRALAIATGLKLA----NPDLTVIVVTGDGDALA--IGGNHFIHALRRNIDITYILFNNQIYGLTKGQYSPTSPVGF 142 (286)
T ss_pred hhhhcHHHHHHHHHHh----CCCCcEEEEeCccHHHh--CCHHHHHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCCc
Confidence 7789999999999998 46899999999996 65 67789999999999999999999864332222111111110
Q ss_pred hhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHH
Q 004968 271 LSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQE 350 (721)
Q Consensus 271 l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~ 350 (721)
... ....|... ...+...+++++|..++....-.+.++|.++|++
T Consensus 143 ~~~---------------------~~~~g~~~--------------~~~d~~~lA~a~Ga~~va~~~~~~~~el~~al~~ 187 (286)
T PRK11867 143 VTK---------------------TTPYGSIE--------------PPFNPVELALGAGATFVARGFDSDVKQLTELIKA 187 (286)
T ss_pred ccc---------------------cccCCCCC--------------CCCCHHHHHHHCCCcEEEEecCCCHHHHHHHHHH
Confidence 000 00001000 0012245677788877643334679999999999
Q ss_pred HHhcCCCCCEEEEEEEe
Q 004968 351 VASLGSMGPVLVHVVTE 367 (721)
Q Consensus 351 a~~~~~~~P~lI~v~T~ 367 (721)
+.+ .++|++|++.+.
T Consensus 188 Al~--~~Gp~lIev~~~ 202 (286)
T PRK11867 188 AIN--HKGFSFVEILQP 202 (286)
T ss_pred HHh--CCCCEEEEEeCC
Confidence 987 589999999874
|
|
| >KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.8e-11 Score=125.78 Aligned_cols=174 Identities=16% Similarity=0.240 Sum_probs=122.6
Q ss_pred HHHHHHHhcccCCCCcEEEe--cCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHH
Q 004968 128 VELTVALHHVFHAPVDKILW--DVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGM 204 (721)
Q Consensus 128 vel~~aL~~vf~~p~D~iv~--d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~ 204 (721)
-+.+-.|..+-+.-.|+++. .+| ||.|+...++.+ .+|+|- .+| |-|.||.|+|+|+|+
T Consensus 475 Q~vIk~Ldk~t~d~~~kviitTGVGqHQMWAAqfy~w~-----kP~~~~-tSG------------GLGtMGfGLPAAIGA 536 (675)
T KOG4166|consen 475 QYVIKVLDKLTDDTGRKVIITTGVGQHQMWAAQFYNWK-----KPRQWL-TSG------------GLGTMGFGLPAAIGA 536 (675)
T ss_pred HHHHHHHHHhccCcCceEEEeccccHHHHHHHHHhccc-----Ccccee-ecC------------CccccccCcchhhcc
Confidence 34555565554433456554 566 999998666543 335554 223 568999999999999
Q ss_pred HHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHH
Q 004968 205 AVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSF 284 (721)
Q Consensus 205 AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~ 284 (721)
.+| +++..||-+-||++|. |+..+|.++.+.++|+.+++.||+.+ |++ ..++.+.-...|
T Consensus 537 sVA----~P~~iViDIDGDaSF~--Mt~~ELat~rq~~~PVKiLiLNNeeq-------------GMV-tQWq~lFYe~ry 596 (675)
T KOG4166|consen 537 SVA----NPDAIVIDIDGDASFI--MTVQELATIRQENLPVKILILNNEEQ-------------GMV-TQWQDLFYEARY 596 (675)
T ss_pred ccc----CcccEEEeccCCceee--eehHhhhhhhhcCCceEEEEecchhh-------------hhH-HHHHHHHHHhhh
Confidence 998 5699999999999998 99999999999999999999999863 333 222222111111
Q ss_pred HHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEE
Q 004968 285 RQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHV 364 (721)
Q Consensus 285 ~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v 364 (721)
. -+. -..|++-.+++++|+...++ ..-++|.+.+++..+ .+||+|++|
T Consensus 597 s--------HTh-------------------Q~nPnf~klA~AmGikalRV---~K~edL~~k~kefls--TkGPvLleV 644 (675)
T KOG4166|consen 597 S--------HTH-------------------QENPNFLKLAAAMGIKALRV---TKKEDLREKIKEFLS--TKGPVLLEV 644 (675)
T ss_pred c--------ccc-------------------ccCccHHHHHHhcCCchhee---ehHHHHHHHHHHHhC--CCCCeEEEE
Confidence 0 000 11244456788999998876 677899999999888 689999999
Q ss_pred EEeccCC
Q 004968 365 VTEENRR 371 (721)
Q Consensus 365 ~T~kg~G 371 (721)
...+-.-
T Consensus 645 ~v~~keh 651 (675)
T KOG4166|consen 645 IVPHKEH 651 (675)
T ss_pred EccCccc
Confidence 8865433
|
|
| >TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.2e-11 Score=123.87 Aligned_cols=134 Identities=16% Similarity=0.168 Sum_probs=88.9
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhh
Q 004968 192 GHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINAL 271 (721)
Q Consensus 192 G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l 271 (721)
+.+|.++|+|+|+++| .++++|||++|||++. ++..++|.+|++++.|+++||.||+..++..++++...+.|..
T Consensus 53 t~mG~alPaAiGaklA----~Pd~~VVai~GDG~f~-~mg~~eL~tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~~ 127 (287)
T TIGR02177 53 GLHGRALPVATGIKLA----NPHLKVIVVGGDGDLY-GIGGNHFVAAGRRNVDITVIVHDNQVYGLTKGQASPTLLKGVK 127 (287)
T ss_pred cccccHHHHHHHHHHH----CCCCcEEEEeCchHHH-hccHHHHHHHHHhCcCeEEEEEECHHHHhhhcccccCccCCcc
Confidence 4469999999999988 4689999999999974 5778899999999999999999998643322222222222211
Q ss_pred hhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHH
Q 004968 272 SSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEV 351 (721)
Q Consensus 272 ~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a 351 (721)
.. ....|... ..+.+....+++++|+...+.+ .+.++|.++++++
T Consensus 128 ~~---------------------~~~~g~~~------------~~~np~~~a~A~g~g~va~~~~--~~~~eL~~ai~~A 172 (287)
T TIGR02177 128 TK---------------------SLPYPNIQ------------DPVNPLLLAIALGYTFVARGFS--GDVAHLKEIIKEA 172 (287)
T ss_pred ee---------------------ecccCccC------------CCCCHHHHHHhCCCCeEEEEec--CCHHHHHHHHHHH
Confidence 00 00000000 0001111235566666655422 6899999999999
Q ss_pred HhcCCCCCEEEEEEEe
Q 004968 352 ASLGSMGPVLVHVVTE 367 (721)
Q Consensus 352 ~~~~~~~P~lI~v~T~ 367 (721)
.+ .++|++|+|.+.
T Consensus 173 l~--~~GpslIeV~~p 186 (287)
T TIGR02177 173 IN--HKGYALVDILQP 186 (287)
T ss_pred Hh--CCCCEEEEEeCC
Confidence 87 589999999874
|
Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes. |
| >PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.5e-10 Score=118.96 Aligned_cols=154 Identities=17% Similarity=0.210 Sum_probs=112.0
Q ss_pred cCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcch
Q 004968 189 FNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSI 268 (721)
Q Consensus 189 ~~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~ 268 (721)
+..+..|.+++.|.|++.|.+..+++.+||++.|||++.. .-+++|..|...+.|+++||.||+..+....|.+.+.+.
T Consensus 66 ~~~~~fg~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~d-IG~~~L~~a~~r~~ni~~ivlDNe~Y~nTGgQ~S~~Tp~ 144 (299)
T PRK11865 66 WIHVAFENAAAVASGIERAVKALGKKVNVVAIGGDGGTAD-IGFQSLSGAMERGHNILYLMYDNEAYMNTGIQRSGSTPF 144 (299)
T ss_pred cchhhhcchHHHHHHHHHHHHHhcCCCeEEEEeCCchHhh-ccHHHHHHHHHcCCCeEEEEECCccccCCCCCCCCCCCC
Confidence 3457788999999999999887777889999999998742 445899999999999999999999866656666777777
Q ss_pred hhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHH
Q 004968 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (721)
Q Consensus 269 g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al 348 (721)
|+..++-.. ++.. .|++.. .-+...++.++|..|+..++-.++.++.+++
T Consensus 145 Ga~t~tsp~-------------Gk~~---~G~~~~--------------kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i 194 (299)
T PRK11865 145 GASTTTSPA-------------GKYS---RGEDRP--------------KKNMPLIMAAHGIPYVATASIGYPEDFMEKV 194 (299)
T ss_pred CcccccCCC-------------Cccc---CCCCCC--------------CCCHHHHHHHcCCCEEEEEeCCCHHHHHHHH
Confidence 765331110 0000 010000 0011345667888888777778999999999
Q ss_pred HHHHhcCCCCCEEEEEEEe--ccCCCccc
Q 004968 349 QEVASLGSMGPVLVHVVTE--ENRRAEDT 375 (721)
Q Consensus 349 ~~a~~~~~~~P~lI~v~T~--kg~G~~~a 375 (721)
++|.+ .+||.+||+.+. .|+|+.+.
T Consensus 195 ~~A~~--~~Gps~I~v~sPC~~~~~~~~~ 221 (299)
T PRK11865 195 KKAKE--VEGPAYIQVLQPCPTGWGFPPE 221 (299)
T ss_pred HHHHh--CCCCEEEEEECCCCCCCCCCHH
Confidence 99998 589999999875 46665553
|
|
| >PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.7e-09 Score=125.86 Aligned_cols=297 Identities=17% Similarity=0.152 Sum_probs=184.0
Q ss_pred ccHHHHHHHHHHHHHHcCCCeE----EEecCCCCc--cCh-HHHHHhC-----CCcEeeccccHHHHHHHHHHHH-----
Q 004968 401 RTYDDCFIEALVMEAEKDKDIV----VVHAGMEMD--LSL-QLFQEKF-----PERYFDVGMAEQHAVTFSAGLA----- 463 (721)
Q Consensus 401 ~~~~~~~~~~L~~~~~~d~~iv----~i~ad~~~~--~~l-~~f~~~f-----p~R~~d~GIaE~~~v~~AaGlA----- 463 (721)
.+=.+|+...+.+-.+.|..-= .+-+...|+ +++ ..|.+.- -+-+|..|+.|.-+.+++.|.+
T Consensus 20 l~GneAivr~~l~q~~~d~~aG~~ta~~vsgYpGsP~~~i~~~l~~~~~~l~~~~i~~e~~~NEkvA~e~a~Gaq~~~~~ 99 (1159)
T PRK13030 20 LTGTQALVRLLLMQRRRDRARGLNTAGFVSGYRGSPLGGVDQALWKAKKLLDASDIRFLPGINEELAATAVLGTQQVEAD 99 (1159)
T ss_pred eeHHHHHHHHHHHhhhHHHhcCCCccceEEEeCCCCHHHHHHHHHHhhhhhcccceEEeecCCHHHHHHHHHHhcccccc
Confidence 3447788888777666664321 122234443 233 2333221 1379999999999999999999
Q ss_pred ----hCCCeeEEEecHhhHHHHHHHHHHHhhcCCc----c-eEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeC
Q 004968 464 ----CGGLKPFCIIPSAFLQRAYDQVVNDVDQQRL----P-VRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPS 534 (721)
Q Consensus 464 ----~~G~~p~~~tys~Fl~ra~dqi~~~~a~~~l----p-Vv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Ps 534 (721)
..|.+.+++.-.+.+.++.|.++|. ++... - |++++|..|.... .+-|+..-...+..|| |+.|+
T Consensus 100 ~~~~~~Gv~~l~~~K~~GvnvaaD~l~~~-n~~G~~~~GG~v~v~gDDpg~~SS--q~eqdSr~~~~~a~iP---vl~Ps 173 (1159)
T PRK13030 100 PERTVDGVFAMWYGKGPGVDRAGDALKHG-NAYGSSPHGGVLVVAGDDHGCVSS--SMPHQSDFALIAWHMP---VLNPA 173 (1159)
T ss_pred CCccccceEEEEecCcCCcccchhHHHHH-HhhcCCCCCcEEEEEecCCCCccC--cCHHHHHHHHHHcCCc---eeCCC
Confidence 6666668887888999999999755 44332 2 5555566665322 2344444444445454 99999
Q ss_pred CHHHHHHHHHHHHHh---CCCCEEEEecCCCc---------c-cc--cCCC-CC--C----cce----------------
Q 004968 535 DEDELVDMVATVASI---DDRPVCFRYPRGAI---------V-RT--DLPG-YR--G----IPI---------------- 576 (721)
Q Consensus 535 d~~E~~~~l~~a~~~---~~~P~~ir~~r~~~---------~-~~--~~p~-~~--~----~~~---------------- 576 (721)
|++|++++...+++. .+-||.+|...... + .. ..|. .+ . ..+
T Consensus 174 ~~qE~~d~~~~a~~lSr~~~~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~~f~~~~~~~~~r~~~~p~~~~~~~~~~rl 253 (1159)
T PRK13030 174 NVQEYLDFGLYGWALSRYSGAWVGFKAISETVESGSTVDLDPDRTRWPAPEDFTPPAGGLHNRWPDLPSLAIEARLAAKL 253 (1159)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCccccCCCcccccccCCCCcHHHHHHHHHHHH
Confidence 999999999999874 34599987643211 0 00 0110 00 0 000
Q ss_pred ----------ecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCC-----CeEEeecCccccccHHHHHHHhccCCe
Q 004968 577 ----------EIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGI-----DVTVADARFCKPLDIKLVRELCQNHTF 641 (721)
Q Consensus 577 ----------~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi-----~v~VId~~~l~PlD~e~i~~l~~~~~~ 641 (721)
++.+..+-.++.++.||++|.....++||.+.|...++ .++|+.+-..|||+.+.+++.++.++.
T Consensus 254 ~~~~~~~~~~~ln~~~~~~~~~~iGIItsG~ay~~v~EAL~~Lgl~~~~~~~lgirilKvgm~~PL~~~~i~~F~~g~d~ 333 (1159)
T PRK13030 254 PAVRAFARANSIDRWVAPSPDARVGIVTCGKAHLDLMEALRRLGLDDADLRAAGIRIYKVGLSWPLEPTRLREFADGLEE 333 (1159)
T ss_pred HHHHHHHHhcCCCceeccCCCCCEEEEEeCccHHHHHHHHHHcCCCcccccccCccEEEeCCccCCCHHHHHHHHhcCCE
Confidence 01111100123679999999999999999998855443 366777779999999999999999999
Q ss_pred EEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHH-cCCCHHHHHHHHHHHhhc
Q 004968 642 LITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLAL-AGLTGHHIAATALSLLGR 712 (721)
Q Consensus 642 vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~-~gl~~~~I~~~i~~~l~~ 712 (721)
|+||||... =+-..+.+.+..... ..+...+|..|. .|.+ ++.. -.|+++.|.+.+.+.++.
T Consensus 334 VlVVEE~~p-~iE~Qlk~~l~~~~~---~~~~~v~GK~~~---~G~p--llp~~gEl~~~~v~~~l~~~l~~ 396 (1159)
T PRK13030 334 ILVIEEKRP-VIEQQIKDYLYNRPG---GARPRVVGKHDE---DGAP--LLSELGELRPSLIAPVLAARLAR 396 (1159)
T ss_pred EEEEeCCch-HHHHHHHHHHHhccc---cCCceeEEEECC---CCCc--CCCCcCCcCHHHHHHHHHHHHhc
Confidence 999999863 133444454443321 112233444221 1110 1112 238999999999777653
|
|
| >TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.8e-10 Score=131.98 Aligned_cols=127 Identities=20% Similarity=0.290 Sum_probs=92.1
Q ss_pred cCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchH-HHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 191 AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQA-YEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 191 ~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~-~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
.|.+|.++|+|+|+++| .++++||+++|||+|. +. .++|.+|.+++.|+++||.||+...+..+++... .+
T Consensus 402 ~~~mG~~~~~AiGa~~a----~p~~~Vv~i~GDG~f~--~~g~~eL~tav~~~~~i~~vVlnN~~~g~~~~q~~~~--~~ 473 (595)
T TIGR03336 402 TLCMGASIGVASGLSKA----GEKQRIVAFIGDSTFF--HTGIPGLINAVYNKANITVVILDNRITAMTGHQPNPG--TG 473 (595)
T ss_pred eeccCchHHHHhhhhhc----CCCCCEEEEeccchhh--hcCHHHHHHHHHcCCCeEEEEEcCcceeccCCCCCCC--CC
Confidence 37899999999999988 4589999999999996 54 6799999999999999999998632211110000 00
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~ 349 (721)
. ...+.. .-..+...+++++|+++..+.+-.+++++.++++
T Consensus 474 -~------------------------~~~~~~--------------~~~~d~~~ia~a~G~~~~~v~~~~~l~~l~~al~ 514 (595)
T TIGR03336 474 -V------------------------TGMGEA--------------TKEISIEELCRASGVEFVEVVDPLNVKETIEVFK 514 (595)
T ss_pred -C------------------------CCCCCc--------------CCCcCHHHHHHHcCCCEEEEeCcCCHHHHHHHHH
Confidence 0 000000 0012345678899999988877788899999999
Q ss_pred HHHhcCCCCCEEEEEEE
Q 004968 350 EVASLGSMGPVLVHVVT 366 (721)
Q Consensus 350 ~a~~~~~~~P~lI~v~T 366 (721)
++.+ .++|++|++..
T Consensus 515 ~a~~--~~gp~li~v~~ 529 (595)
T TIGR03336 515 AALA--AEGVSVIIAKQ 529 (595)
T ss_pred HHHh--cCCCEEEEEcc
Confidence 9987 58999999865
|
Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase. |
| >COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.5e-09 Score=119.48 Aligned_cols=172 Identities=16% Similarity=0.168 Sum_probs=106.8
Q ss_pred cccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHHhCchhhhHHHHhhCCCC-CCCCCCCCCCCCcCcCCCcchHHHHH
Q 004968 124 SLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGIS-GYTSRSESEYDPFNAGHGCNSVSAGL 202 (721)
Q Consensus 124 slg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~~~~~~~r~~ggl~-G~~~~~es~~d~~~~G~~G~~is~A~ 202 (721)
.|-+..+.-.+-. |-.|.|.|+.|.|-..|.. .. -+|+...-. ...=-||.|+++|+|+
T Consensus 362 pLtq~~~w~~~~~-fl~p~dviiaetGtS~FG~------------------~~~~lP~~~~~i-~Q~lWGSIG~t~pAal 421 (557)
T COG3961 362 PLTQEWLWNTVQN-FLKPGDVIIAETGTSFFGA------------------LDIRLPKGATFI-SQPLWGSIGYTLPAAL 421 (557)
T ss_pred cccHHHHHHHHHh-hCCCCCEEEEccccccccc------------------eeeecCCCCeEE-cccchhhcccccHhhh
Confidence 3555544433322 3359999999999633322 11 244431100 0011389999999999
Q ss_pred HHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhc
Q 004968 203 GMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSS 281 (721)
Q Consensus 203 G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~ 281 (721)
|.++|.+ ++++|.++|||+++ ++-+++.+..+|+ .|+|||+||++|+ +...-.+...
T Consensus 422 Ga~~A~~----drR~IL~iGDGs~Q--lTvQEiStmiR~gl~p~ifvlNN~GYT-IEr~IHg~~~--------------- 479 (557)
T COG3961 422 GAALAAP----DRRVILFIGDGSLQ--LTVQEISTMIRWGLKPIIFVLNNDGYT-IERAIHGPTA--------------- 479 (557)
T ss_pred hhhhcCC----CccEEEEEcCchhh--hhHHHHHHHHHcCCCcEEEEEcCCCcE-EEehhcCCCc---------------
Confidence 9999964 89999999999998 9999999999999 6788888888873 2111111111
Q ss_pred hHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceE-EeccCCCCHHHHHHHHHHHHhcCCCCCE
Q 004968 282 KSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYY-IGPVDGHNIEDLISVLQEVASLGSMGPV 360 (721)
Q Consensus 282 ~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~-~g~vdGhd~~~l~~al~~a~~~~~~~P~ 360 (721)
.|+++. . .+...+.++||..- .....-...+++..+++.+.+. .+++.
T Consensus 480 -~YNdI~---------------~--------------Wd~~~l~~afg~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~i~ 528 (557)
T COG3961 480 -PYNDIQ---------------S--------------WDYTALPEAFGAKNGEAKFRATTGEELALALDVAFAN-NDRIR 528 (557)
T ss_pred -Cccccc---------------c--------------cchhhhhhhcCCCCceEEEeecChHHHHHHHHHHhcC-CCceE
Confidence 222221 1 12234566665331 1001113567777888887764 57899
Q ss_pred EEEEEEec
Q 004968 361 LVHVVTEE 368 (721)
Q Consensus 361 lI~v~T~k 368 (721)
+|||+.-+
T Consensus 529 lIEv~lp~ 536 (557)
T COG3961 529 LIEVMLPV 536 (557)
T ss_pred EEEEecCc
Confidence 99999743
|
|
| >PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.2e-08 Score=119.59 Aligned_cols=291 Identities=16% Similarity=0.132 Sum_probs=185.1
Q ss_pred ccHHHHHHHHHHHHHHcCCC--e---EEEecCCCCc--cCh-HHHHHhC-----CCcEeeccccHHHHHHHH--------
Q 004968 401 RTYDDCFIEALVMEAEKDKD--I---VVVHAGMEMD--LSL-QLFQEKF-----PERYFDVGMAEQHAVTFS-------- 459 (721)
Q Consensus 401 ~~~~~~~~~~L~~~~~~d~~--i---v~i~ad~~~~--~~l-~~f~~~f-----p~R~~d~GIaE~~~v~~A-------- 459 (721)
.+=.+|+...+.+..++|.. + -+++ ...|+ +++ ..|.+.- -+-+|..|+.|.-+.+++
T Consensus 28 l~G~qAivR~~l~q~~~D~~aG~~ta~~vs-GYpGsP~~~id~~l~~~~~~l~~~~i~fe~~~NEkvAae~~~GsQ~~~~ 106 (1165)
T PRK09193 28 LTGTQALVRLPLLQRERDRAAGLNTAGFVS-GYRGSPLGGLDQELWRAKKHLAAHDIVFQPGLNEDLAATAVWGSQQVNL 106 (1165)
T ss_pred eeHHHHHHHHHHHHhhHHHhcCCCccceEE-eeCCCCHHHHHHHHHHhhhhhcccceEEeeccCHHHHHHHHhhhccccc
Confidence 34578888887776666632 2 2222 34443 233 2333211 238999999999999999
Q ss_pred -HHHHhCCCeeEEEecHhhHHHHHHHHHHHhhcCCc----c-eEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEee
Q 004968 460 -AGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRL----P-VRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAP 533 (721)
Q Consensus 460 -aGlA~~G~~p~~~tys~Fl~ra~dqi~~~~a~~~l----p-Vv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~P 533 (721)
.|.+..|.+.+++.-.+.+.|+.|.++|. ++... - |++++|..|.... .+-|+..-...+..| -|+.|
T Consensus 107 ~~~a~~~Gv~~l~y~K~pGvn~aaD~l~~~-n~~G~~~~GGvv~v~gDDpg~~SS--q~eqdSr~~~~~a~i---Pvl~P 180 (1165)
T PRK09193 107 FPGAKYDGVFGMWYGKGPGVDRSGDVFRHA-NAAGTSPHGGVLALAGDDHAAKSS--TLPHQSEHAFKAAGM---PVLFP 180 (1165)
T ss_pred ccceeeccceEEEecCcCCccccHhHHHHH-HhhcCCCCCcEEEEEecCCCCccc--cchhhhHHHHHHcCC---ceeCC
Confidence 77789999999999999999999999755 33332 2 5555566665322 233344333444444 59999
Q ss_pred CCHHHHHHHHHHHHHh---CCCCEEEEecCCCc------c----c--ccCCCCCCcceecC----ce-------------
Q 004968 534 SDEDELVDMVATVASI---DDRPVCFRYPRGAI------V----R--TDLPGYRGIPIEIG----KG------------- 581 (721)
Q Consensus 534 sd~~E~~~~l~~a~~~---~~~P~~ir~~r~~~------~----~--~~~p~~~~~~~~~g----k~------------- 581 (721)
+|++|+.++...+++. ..-||.+|...... . . ...|. ++..+.+ +|
T Consensus 181 s~~qE~~d~~~~g~~lSr~~g~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~--~f~~~~~g~~~r~~~~p~~~~~~~~~ 258 (1165)
T PRK09193 181 ANVQEILDYGLHGWAMSRYSGLWVGMKTVTDVVESSASVDVDPDRVQIVLPE--DFEMPPGGLNIRWPDPPLEQEARLLD 258 (1165)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCcc--cccCCcccccccCCCCcHHHHHHHHH
Confidence 9999999999999874 35599987643211 0 0 00110 0111111 10
Q ss_pred ----------------EEEEe--CCcEEEEEechhhHHHHHHHHHHHhCCCC--------eEEeecCccccccHHHHHHH
Q 004968 582 ----------------KVLVE--GKDVALLGYGAMVQNCLKARALLSKLGID--------VTVADARFCKPLDIKLVREL 635 (721)
Q Consensus 582 ----------------~vl~e--G~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~--------v~VId~~~l~PlD~e~i~~l 635 (721)
++... +.++-||+.|.....+++|.+.| |++ +.|+.+-..||||.+.+++.
T Consensus 259 ~rl~a~~a~a~~n~ln~~~~~~~~~~iGIItsG~~y~~v~eal~~l---g~~~~~~~~~gi~ilKvgm~~PL~~~~i~~F 335 (1165)
T PRK09193 259 YKLYAALAYARANKLDRVVIDSPNARLGIVAAGKAYLDVRQALRDL---GLDEETAARLGIRLYKVGMVWPLEPQGVRAF 335 (1165)
T ss_pred HHHHHHHHHHHhCCCCeeecCCCCCCEEEEecCccHHHHHHHHHHc---CCChhhhcccCCCEEEeCCCCCCCHHHHHHH
Confidence 11111 36799999999999999887765 554 88999999999999999999
Q ss_pred hccCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHH-cCCCHHHHHHHHHHHhhc
Q 004968 636 CQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLAL-AGLTGHHIAATALSLLGR 712 (721)
Q Consensus 636 ~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~-~gl~~~~I~~~i~~~l~~ 712 (721)
++..+.|+||||... =+-..|.+.+.+.+. ..+...+|-.| ++|. .++-. -.|+++.|.+.+.+.++.
T Consensus 336 a~g~~~vlVVEE~~p-~iE~qlk~~l~~~~~---~~rp~v~GK~~---~~g~--~llp~~gEl~~~~va~~l~~~l~~ 404 (1165)
T PRK09193 336 AEGLDEILVVEEKRQ-IIEYQLKEELYNWPD---DVRPRVIGKFD---PQGN--WLLPAHGELSPAIIAKAIARRLLK 404 (1165)
T ss_pred HhcCCEEEEEecCch-HHHHHHHHHHhhccC---CcCceeEeeeC---CCCC--ccCCCcCCcCHHHHHHHHHHHhhh
Confidence 999999999999752 234455555544332 22223445432 1121 12222 238999999999777653
|
|
| >PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.4e-09 Score=110.04 Aligned_cols=225 Identities=19% Similarity=0.233 Sum_probs=121.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHhHh---------------------cCCCCCCCcccHHHHHHHHhcccC-CCCcE-EEecC
Q 004968 93 SLTIKELKQLAVEIRSELSSIVS---------------------KTEKSLKSSLAAVELTVALHHVFH-APVDK-ILWDV 149 (721)
Q Consensus 93 ~~~~~~l~~la~eiR~~~~~~~~---------------------~~~Gh~~sslg~vel~~aL~~vf~-~p~D~-iv~d~ 149 (721)
+++.++|+.+-+-+|.-..-.+. +.-||.|.+.|+.=+.+.|.++-. ...|. +|...
T Consensus 1 ~l~~~~l~~~d~~wrAanYLsv~qiYL~dNpLL~~pL~~ediKprllGHWGt~PGlnfiyahlNrlI~~~~~~~~~v~Gp 80 (379)
T PF09364_consen 1 KLSDEELEALDAYWRAANYLSVGQIYLRDNPLLREPLKPEDIKPRLLGHWGTSPGLNFIYAHLNRLIRKYDLDMIYVMGP 80 (379)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHBSS-TT--SS--GGGB-SS--S-TTTHHHHHHHHHHHHHHHHHHTB-B--EESS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhCcCcCCCCCHHHCCcccccccCCCccHHHHHHHHHHHHHhcCCceEEEecC
Confidence 35677777776666643221111 134999999998766666655422 22344 56788
Q ss_pred CchH---HHHHHHhCchhh-----------hHH-HHhhCCCCCCCCC--CCCCCCCcCcCCCcchHHHHHHHHHHHHHcC
Q 004968 150 GEQT---YAHKILTGRRSL-----------IHT-LRKKDGISGYTSR--SESEYDPFNAGHGCNSVSAGLGMAVARDIKG 212 (721)
Q Consensus 150 GH~~---y~h~~ltGr~~~-----------~~~-~r~~ggl~G~~~~--~es~~d~~~~G~~G~~is~A~G~AlA~~l~g 212 (721)
||.. .+...|.|-..+ |.. +|||.--.|+|+. .+.|....-.|-+|++++.|.|+++- +
T Consensus 81 GHg~pai~A~~~LeGs~se~yp~~~~d~~Gl~~L~~~FS~PgGipSH~~p~tPGsIhEGGELGYaLshA~GA~~D----n 156 (379)
T PF09364_consen 81 GHGGPAILANLYLEGSYSEFYPDISQDEEGLRRLFRQFSFPGGIPSHVSPETPGSIHEGGELGYALSHAFGAVFD----N 156 (379)
T ss_dssp GGGHHHHHHHHHHHSHHHHHSTTS-SSHHHHHHHHHHBTSTTSB-SSS-TTSTT-S---SSTS-HHHHHHHHHTT-----
T ss_pred CCCchhhhhhhhhcCccccccCCCCCCHHHHHHHHHhCCCCCCCccccCcCCCCccCcCcchhhHHHHHhhcccC----C
Confidence 9987 677788884222 333 4666433455543 23444333458899999999998874 6
Q ss_pred CCCeEEEEEcCCCcccchHHHHHHHhhhcC----CCEEEEEECCCCC-cCCCccCCCCcchhhhhhhhhhhhhchHHHHH
Q 004968 213 KRECIVTVISNGTTMAGQAYEAMSNAGYLD----SNMIVILNDSRHS-LHPKIEESPKTSINALSSTLSRIQSSKSFRQL 287 (721)
Q Consensus 213 ~~~~VvaviGDGal~~G~~~Ealn~A~~~~----~plivIv~dN~~~-s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~ 287 (721)
+|-.|+||+|||+..+|-.--+...-..++ ..|+-|+.=|++- +.|| .|.++.
T Consensus 157 Pdliv~~vvGDGEaETGplA~sWh~~kflnP~~dGaVLPILhLNG~KI~~pT--------------il~r~~-------- 214 (379)
T PF09364_consen 157 PDLIVACVVGDGEAETGPLAASWHSNKFLNPATDGAVLPILHLNGYKISNPT--------------ILARMS-------- 214 (379)
T ss_dssp TT-EEEEEEETTGGGSHHHHHHGGGGGSS-TTTS-EEEEEEEE-SBSSSSB---------------HHHHS---------
T ss_pred CCeEEEEEecCCcccCCcccccccccceeCcccCceeeceEEecCccccCCe--------------EeeecC--------
Confidence 799999999999998886433333233333 4689999999983 2222 111111
Q ss_pred HHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHH--------HHHHHhc----C
Q 004968 288 REVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISV--------LQEVASL----G 355 (721)
Q Consensus 288 r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~a--------l~~a~~~----~ 355 (721)
-.++ ..+|+.+||..+ .|+|+|++++... ++++++. +
T Consensus 215 --------------~~eL----------------~~lf~G~Gy~p~-~Veg~dp~~~h~~ma~ald~a~~~I~~iq~~Ar 263 (379)
T PF09364_consen 215 --------------DEEL----------------EALFRGYGYEPI-FVEGDDPADMHQAMAAALDWALEEIRAIQKAAR 263 (379)
T ss_dssp --------------HHHH----------------HHHHHHTTEEEE-EEE---HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --------------HHHH----------------HHHHHhCCCeEE-EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011 347899999987 7899998655332 2233221 0
Q ss_pred ----CCCC--EEEEEEEeccCCCcc
Q 004968 356 ----SMGP--VLVHVVTEENRRAED 374 (721)
Q Consensus 356 ----~~~P--~lI~v~T~kg~G~~~ 374 (721)
..+| -+|..+|-||++.|.
T Consensus 264 ~~~~~~~prwPmivlRtPKGWtgP~ 288 (379)
T PF09364_consen 264 SGNPAYRPRWPMIVLRTPKGWTGPK 288 (379)
T ss_dssp T--SS----EEEEEEE--TTTTS-S
T ss_pred cCCCCCCCCCcEEEEECCcccCCcc
Confidence 1233 388899999999764
|
PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A. |
| >PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.8e-09 Score=137.06 Aligned_cols=129 Identities=13% Similarity=0.127 Sum_probs=91.9
Q ss_pred cCCCcc--hHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhc--CCCEEEEEECCCCCcCCCccCCCCc
Q 004968 191 AGHGCN--SVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYL--DSNMIVILNDSRHSLHPKIEESPKT 266 (721)
Q Consensus 191 ~G~~G~--~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~--~~plivIv~dN~~~s~~t~~~~~~~ 266 (721)
-|.+|. ++|+|+|+++|. +++|||++|||+|+ |..++|.+|+++ ++|+++||.||+..
T Consensus 758 ~G~mG~~G~lpaAIGaala~-----~r~Vv~i~GDGsF~--m~~~EL~Ta~r~~~~lpi~iVV~NN~gg----------- 819 (1655)
T PLN02980 758 RGASGIDGLLSTAIGFAVGC-----NKRVLCVVGDISFL--HDTNGLSILSQRIARKPMTILVINNHGG----------- 819 (1655)
T ss_pred CCccchhhhHHHHHHHhhcC-----CCCEEEEEehHHHH--hhhhHHHHhhcccCCCCEEEEEEeCCCc-----------
Confidence 478888 699999999883 78999999999996 999999999985 89999999999851
Q ss_pred chhhhhhhhhhhh-hchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHH
Q 004968 267 SINALSSTLSRIQ-SSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLI 345 (721)
Q Consensus 267 ~~g~l~~~l~~~~-~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~ 345 (721)
|.. +++.... ..+.+ .+.+......++...++++||+++..+ .+.++|.
T Consensus 820 --gi~-~~l~~~~~~~~~~------------------------~~~~~~~~~~~df~~lA~a~G~~~~rV---~~~~eL~ 869 (1655)
T PLN02980 820 --AIF-SLLPIAKRTEPRV------------------------LNQYFYTSHDISIENLCLAHGVRHLHV---GTKSELE 869 (1655)
T ss_pred --Hhh-hcCccCCCCcchh------------------------HHHHhcCCCCCCHHHHHHHcCCceeec---CCHHHHH
Confidence 111 1110000 00000 000000001234567889999999977 7899999
Q ss_pred HHHHHHHhcCCCCCEEEEEEEecc
Q 004968 346 SVLQEVASLGSMGPVLVHVVTEEN 369 (721)
Q Consensus 346 ~al~~a~~~~~~~P~lI~v~T~kg 369 (721)
++++++.+ .++|+||+|.|.+.
T Consensus 870 ~aL~~a~~--~~~p~lIEV~t~~~ 891 (1655)
T PLN02980 870 DALFTSQV--EQMDCVVEVESSID 891 (1655)
T ss_pred HHHHHhhc--cCCCEEEEEecChh
Confidence 99999886 58999999999753
|
|
| >COG3962 Acetolactate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.7e-08 Score=107.63 Aligned_cols=183 Identities=15% Similarity=0.199 Sum_probs=121.9
Q ss_pred CCcccHHHHHHHHhcccCCCCcEEEecCCch-HHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHH
Q 004968 122 KSSLAAVELTVALHHVFHAPVDKILWDVGEQ-TYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSA 200 (721)
Q Consensus 122 ~sslg~vel~~aL~~vf~~p~D~iv~d~GH~-~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~ 200 (721)
-+-..+.+++-++.... .+++.+|...|-- .=.|+++.- +-|. +-|-++|...||+-|+-
T Consensus 392 nt~ptq~~vigav~~~~-~~~svvvcAAGsLPGdLhkLW~~---------------~~p~---~YH~EYgfSCMGYEiaG 452 (617)
T COG3962 392 NTLPTQTQVIGAVQRTI-SDDSVVVCAAGSLPGDLHKLWRA---------------GVPG---TYHLEYGFSCMGYEIAG 452 (617)
T ss_pred ccCccchhHHHHHHhhc-CCCcEEEEeCCCCcHHHHHHhcc---------------CCCC---ceeeeeccccccccccc
Confidence 34555666665554332 2566777766631 133444321 1121 23455788899999999
Q ss_pred HHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhh-
Q 004968 201 GLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQ- 279 (721)
Q Consensus 201 A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~- 279 (721)
++|+.+| .+++.|++++|||+++ |.+-+|.++..++..+++++.||.. +|.+.+ |+-..
T Consensus 453 ~lG~K~a----~pdreV~vmVGDGSym--MlnSEL~Tsv~~g~Ki~Vvl~DN~G-------------yGCIn~-LQm~~G 512 (617)
T COG3962 453 GLGAKAA----EPDREVYVMVGDGSYM--MLNSELATSVMLGKKIIVVLLDNRG-------------YGCINR-LQMATG 512 (617)
T ss_pred ccccccC----CCCCeEEEEEcccchh--hhhHHHHHHHHcCCeEEEEEECCCC-------------cchhhh-hhhhcC
Confidence 9998754 6789999999999998 9999999999999999999999985 344321 11111
Q ss_pred hchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCC
Q 004968 280 SSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGP 359 (721)
Q Consensus 280 ~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P 359 (721)
....+..+|+.... ..++.-+++..++++|.+...+ +++++|.++|+.+|+ +.++
T Consensus 513 g~sf~~~~r~~~~e--------------------~~~~~vDfA~~A~s~Ga~~~kv---~~i~eL~aAL~~Ak~--~~~t 567 (617)
T COG3962 513 GASFNNLLRDTDHE--------------------EEILQVDFAAHAESYGAKAYKV---GTIEELEAALADAKA--SDRT 567 (617)
T ss_pred cchhhhhhhhhccc--------------------CCCCcccHHHHHhhcCceeEec---CCHHHHHHHHHHHHh--CCCC
Confidence 11122222322210 0122234466788999998766 799999999999998 6899
Q ss_pred EEEEEEEec
Q 004968 360 VLVHVVTEE 368 (721)
Q Consensus 360 ~lI~v~T~k 368 (721)
++|+++|..
T Consensus 568 tvi~I~t~P 576 (617)
T COG3962 568 TVIVIDTDP 576 (617)
T ss_pred EEEEEecCC
Confidence 999999964
|
|
| >PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-07 Score=115.85 Aligned_cols=252 Identities=16% Similarity=0.125 Sum_probs=162.9
Q ss_pred CcEeeccccHHHH---------HHHHHHHHhCCCeeEEEecHhhHHHHHHHHHHHhh-cCCc---ceEEEEcCCCCcCCC
Q 004968 443 ERYFDVGMAEQHA---------VTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVD-QQRL---PVRFVITSAGLVGSD 509 (721)
Q Consensus 443 ~R~~d~GIaE~~~---------v~~AaGlA~~G~~p~~~tys~Fl~ra~dqi~~~~a-~~~l---pVv~v~~~~G~~G~d 509 (721)
+-+|..|+.|.-+ +.++.|.+..|.+.+++.-.+.+.|+.|.++|... +... =|++++|..|....
T Consensus 85 ~i~fe~~~NEklAatav~Gsq~~e~~~~a~~dGv~~lwygK~pGvn~aaD~l~h~n~~gt~~~GGvv~v~gDDpg~~SS- 163 (1186)
T PRK13029 85 DVVFQPGVNEELAATAVWGSQQLELDPGAKRDGVFGMWYGKGPGVDRSGDALRHANLAGTSPLGGVLVLAGDDHGAKSS- 163 (1186)
T ss_pred ceEEeecCCHHHHHHHhhhhhhcccccceeeccceEEEecCcCCcccchhHHHHhhccccCCCCcEEEEEecCCCCccc-
Confidence 3789999999999 55666666778999999889999999999976642 3222 25555566665321
Q ss_pred CCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHh---CCCCEEEEecCCCcc----------c--ccCCCCCCc
Q 004968 510 GPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYPRGAIV----------R--TDLPGYRGI 574 (721)
Q Consensus 510 G~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~---~~~P~~ir~~r~~~~----------~--~~~p~~~~~ 574 (721)
.+-|+..-...+..| -|+.|+|++|+.++...+++. ..-||.++....... . ...|. ++
T Consensus 164 -q~eqdSr~~~~~a~i---Pvl~Ps~~qE~~d~~~~a~~lSr~~g~~V~lr~~t~v~~s~~~V~~~~~r~~~~~p~--~f 237 (1186)
T PRK13029 164 -SVAHQSDHTFIAWGI---PVLYPASVQDYLDYGLHGWAMSRYSGLWVGMKCVTEVVESTASVDLDPDRVDIVLPD--DF 237 (1186)
T ss_pred -cCHHHHHHHHHHcCC---ceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEeeeeeecceeeecCCcccccCCcc--cc
Confidence 233444433444444 599999999999999999874 355999876433210 0 00110 01
Q ss_pred ceecC--------------------------------ce-EEEE--eCCcEEEEEechhhHHHHHHHHHHHhCCCC----
Q 004968 575 PIEIG--------------------------------KG-KVLV--EGKDVALLGYGAMVQNCLKARALLSKLGID---- 615 (721)
Q Consensus 575 ~~~~g--------------------------------k~-~vl~--eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~---- 615 (721)
..+.+ +. ++.. ++.++-||+.|.....+++|.+.| |++
T Consensus 238 ~~~~~g~~~r~~~~p~~~e~~~~~~kl~a~~a~a~~n~ln~~~~~~~~~~~GIItsG~~y~~v~eAl~~l---gl~~~~~ 314 (1186)
T PRK13029 238 VLPPGGLHIRWPDDPLAQEERMLEFKWYAALAYVRANRLNRLVIDGPNPRLGIIAAGKAYLDVRQALRDL---GLDDATC 314 (1186)
T ss_pred cCCccccccccCCCcHHHHHHHHHHHHHHHHHHHHhCCCCEEeccCCCCCEEEEecCccHHHHHHHHHHc---CCChhhc
Confidence 00110 00 1111 236899999999999999887765 444
Q ss_pred ----eEEeecCccccccHHHHHHHhccCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCC-------ccc-
Q 004968 616 ----VTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPD-------NYI- 683 (721)
Q Consensus 616 ----v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d-------~f~- 683 (721)
+.|+.+-+.||||.+.+++.++..+.|+||||... =+-..|.+.+.+.+. ..+...+|-.| .|.
T Consensus 315 ~~~gi~ilKvgm~~PL~~~~i~~Fa~g~d~vlVVEE~~p-~iE~qlk~~l~~~~~---~~rp~v~GK~~~~~~~~~~~~~ 390 (1186)
T PRK13029 315 AALGIRLLKVGCVWPLDPQSVREFAQGLEEVLVVEEKRA-VIEYQLKEELYNWRE---DVRPAIFGKFDHRDGAGGEWSV 390 (1186)
T ss_pred cccCCCEEEeCCCCCCCHHHHHHHHhcCCEEEEEecCch-HHHHHHHHHHhhccC---CcCCeeEecccccccccccccc
Confidence 88999999999999999999999999999999752 244555555544332 22223455433 000
Q ss_pred cCCCHHHHHHH-cCCCHHHHHHHHHHHh
Q 004968 684 EHASPTQQLAL-AGLTGHHIAATALSLL 710 (721)
Q Consensus 684 ~~g~~~~l~~~-~gl~~~~I~~~i~~~l 710 (721)
+.|. .++.. -.|+++.|.+.+.+.+
T Consensus 391 ~~g~--~llp~~gEL~p~~va~~l~~~l 416 (1186)
T PRK13029 391 PAGR--WLLPAHAELSPALIAKAIARRL 416 (1186)
T ss_pred cccC--CCCCcccCcCHHHHHHHHHHHH
Confidence 1111 12222 2389999999987776
|
|
| >KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.5e-07 Score=103.21 Aligned_cols=245 Identities=14% Similarity=0.158 Sum_probs=156.3
Q ss_pred ccHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh------------------HHHHHhCCC---cEeeccccHHHHHHHH
Q 004968 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL------------------QLFQEKFPE---RYFDVGMAEQHAVTFS 459 (721)
Q Consensus 401 ~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l------------------~~f~~~fp~---R~~d~GIaE~~~v~~A 459 (721)
..|..|=+-++-.++.+.-++-+-+.|++.||=- +.+... .. -+-|..++|.+..|+-
T Consensus 564 iDWaTAEAlA~GSll~qG~nVRiSGqDVGRGTFshRHAM~VdQ~Td~~~IPLN~m~~~-qkg~LEvans~LSEEAvLGFE 642 (913)
T KOG0451|consen 564 IDWATAEALAIGSLLYQGHNVRISGQDVGRGTFSHRHAMLVDQQTDEMFIPLNSMEGG-QKGKLEVANSILSEEAVLGFE 642 (913)
T ss_pred cchHHHHHHHHHHHHhccCceeeeccccCcccccccceeeeeccccceeeeccccCCC-cCCeeEeccccccHhhhhhhh
Confidence 4566666777788888889999999999877510 111100 12 2446789999999999
Q ss_pred HHHHhCC--CeeEEEe-cHhhHHHHHHHHHHHhh--------cCCcceEEEEcCCCCcCCCCCCcCcHHHHHHHcc----
Q 004968 460 AGLACGG--LKPFCII-PSAFLQRAYDQVVNDVD--------QQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSC---- 524 (721)
Q Consensus 460 aGlA~~G--~~p~~~t-ys~Fl~ra~dqi~~~~a--------~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~---- 524 (721)
.||+.+. ..++.+. |.+|..-| ||+-|.- +..--+++...+ |+-| -||-|+.+---.|+..
T Consensus 643 yGmsienP~~L~iWEAQFGDFfNGA--QIIiDTFi~sgE~KWl~ssglvmLLPH-GyDG-AgpeHSSCRiERFLQlCDS~ 718 (913)
T KOG0451|consen 643 YGMSIENPNNLIIWEAQFGDFFNGA--QIIIDTFIVSGETKWLESSGLVMLLPH-GYDG-AGPEHSSCRIERFLQLCDSK 718 (913)
T ss_pred cccccCCcccceeehhhhcccccCc--eEEEeeeecccchhhhhhCCeEEEccC-CcCC-CCCccchhhHHHHHHHhccc
Confidence 9999995 5566654 78876322 3332221 112234555555 5545 3788987654344432
Q ss_pred -------CCCcEEEeeCCHHHHHHHHHHHHH-hCCCCEEEEecCCCcccccCCCC--------CCcce--ecCceEEEEe
Q 004968 525 -------LPNMIVMAPSDEDELVDMVATVAS-IDDRPVCFRYPRGAIVRTDLPGY--------RGIPI--EIGKGKVLVE 586 (721)
Q Consensus 525 -------iPnl~V~~Psd~~E~~~~l~~a~~-~~~~P~~ir~~r~~~~~~~~p~~--------~~~~~--~~gk~~vl~e 586 (721)
--||.|+-|.++.+...+++.-+. +-.+|.++.-|+.... +|.. +++.+ .+|.-.+-.+
T Consensus 719 E~~vDGd~VNm~vvnPTTpAQYfHlLRRQ~vrNfRKPLiVv~PK~LLR---lPaA~ST~~ef~PGTtf~nVigd~~~~p~ 795 (913)
T KOG0451|consen 719 ETSVDGDSVNMHVVNPTTPAQYFHLLRRQLVRNFRKPLIVVAPKTLLR---LPAATSTHEEFQPGTTFHNVIGDTIAKPE 795 (913)
T ss_pred cccCCCcceeEEEeCCCCHHHHHHHHHHHHHHhccCceEEechHHHhh---CcchhhhHhhcCCCccccccccccccChh
Confidence 136899999999999999986654 4477998877765421 2211 11111 1222110011
Q ss_pred CCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCC----eEEEEcCCC-CCChH
Q 004968 587 GKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHT----FLITVEEGS-IGGFG 654 (721)
Q Consensus 587 G~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~----~vvvvEe~~-~gG~g 654 (721)
.-+-+|++.|-......++.+.+..+. .+.++.+-.+-||+-+.+...+++++ .|..-||.. .|-|.
T Consensus 796 kvkkvifcSGKH~y~l~k~Re~rgakd-~~AI~RvE~LCPFPi~~LQa~l~kY~~vqdfvWSQEEprNmGaWs 867 (913)
T KOG0451|consen 796 KVKKVIFCSGKHYYTLAKEREKRGAKD-TVAILRVESLCPFPIQELQAQLAKYGNVQDFVWSQEEPRNMGAWS 867 (913)
T ss_pred HheEEEEecCcchhhHHHHHHhccccc-ceeeEehhhcCCCchHHHHHHHHhcCChhhhcccccccccCCcce
Confidence 125678899999888877777664433 37899999999999998877766653 566778876 46663
|
|
| >PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.7e-08 Score=103.95 Aligned_cols=116 Identities=18% Similarity=0.153 Sum_probs=85.7
Q ss_pred EeeccccHHHHHHHHHHHHhCCCeeEEEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHHHcc
Q 004968 445 YFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSC 524 (721)
Q Consensus 445 ~~d~GIaE~~~v~~AaGlA~~G~~p~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~ 524 (721)
.+-..-+|..+++++.|+|++|.|.+++|.+..+..+.|.| ..++..++|+++++..++..+..+++|+...|+.+.+
T Consensus 38 ~~~~~E~E~~A~~~~~GAs~aG~ra~t~ts~~Gl~lm~e~l-~~a~~~~~P~V~~~~~R~g~~~g~~~~~~q~D~~~~~- 115 (230)
T PF01855_consen 38 KVVQAESEHAAMEAAIGASAAGARAMTATSGPGLNLMAEPL-YWAAGTELPIVIVVVQRAGPSPGLSTQPEQDDLMAAR- 115 (230)
T ss_dssp EEEE-SSHHHHHHHHHHHHHTT--EEEEEECCHHHHHCCCH-HHHHHTT--EEEEEEEB---SSSB--SB-SHHHHHTT-
T ss_pred EEEEecchHHHHHHHHHHHhcCCceEEeecCCcccccHhHH-HHHHHcCCCEEEEEEECCCCCCCCcCcCChhHHHHHH-
Confidence 66777999999999999999999999999999999999987 5668999999988854444454578999999976655
Q ss_pred CCCcEEEeeCCHHHHHHHHHHHHHhC---CCCEEEEecCCC
Q 004968 525 LPNMIVMAPSDEDELVDMVATVASID---DRPVCFRYPRGA 562 (721)
Q Consensus 525 iPnl~V~~Psd~~E~~~~l~~a~~~~---~~P~~ir~~r~~ 562 (721)
.-++.|++|+|++|+.++...|++.+ ..|++++.+...
T Consensus 116 d~~~~vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~~ 156 (230)
T PF01855_consen 116 DSGWIVLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLFDGFL 156 (230)
T ss_dssp TSS-EEEE--SHHHHHHHHHHHHHHHHHHTSEEEEEEECCC
T ss_pred hcCeEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechhh
Confidence 56889999999999999999998754 459998876543
|
This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B .... |
| >COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.2e-07 Score=105.79 Aligned_cols=205 Identities=20% Similarity=0.229 Sum_probs=131.9
Q ss_pred cEeeccccHHHHHHHHHHHHhCCCeeEE---EecHhhH---HHHHHHHHHHhh---cCCcceEEEEcCCCCcCCCCCCcC
Q 004968 444 RYFDVGMAEQHAVTFSAGLACGGLKPFC---IIPSAFL---QRAYDQVVNDVD---QQRLPVRFVITSAGLVGSDGPTQC 514 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~G~~p~~---~tys~Fl---~ra~dqi~~~~a---~~~lpVv~v~~~~G~~G~dG~TH~ 514 (721)
.++|.+.+|.+++++=.|.+..--+.++ +-|.+|. |.-+||.+..-- .....+++...+ |.-| -||.|+
T Consensus 628 ~v~nS~LSEeAvlgFEYGYs~~~p~~lvlWEAQFGDFaNgAQvviDQfisSge~KW~r~sgLv~lLPH-gyEG-QGPEHS 705 (906)
T COG0567 628 EVINSPLSEEAVLGFEYGYSLANPKTLVLWEAQFGDFANGAQVVIDQFISSGEQKWGRMSGLVMLLPH-GYEG-QGPEHS 705 (906)
T ss_pred EEEechhhHHHHHhhhhhhhhcCCchhhhhhhhhcccccCCeeeeccccccHHHHHHHhcCceEEccC-CCCC-CCCcCc
Confidence 4679999999999999999998544333 3477775 677887643321 123345666665 4444 589999
Q ss_pred cHHHHHHHcc--CCCcEEEeeCCHHHHHHHHHHHHH-hCCCCEEEEecCCCcccccCCCCCCcceecCceE-EEEe----
Q 004968 515 GAFDITFMSC--LPNMIVMAPSDEDELVDMVATVAS-IDDRPVCFRYPRGAIVRTDLPGYRGIPIEIGKGK-VLVE---- 586 (721)
Q Consensus 515 ~~~dia~~~~--iPnl~V~~Psd~~E~~~~l~~a~~-~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~gk~~-vl~e---- 586 (721)
..-.=.|+.. --||+|..|+++...+.+++.-+. ...+|.++..|+......... ..-..+.-++.+ ++.+
T Consensus 706 SaRlER~LQLcaE~NmqV~~pstpaq~fHlLRrq~~r~~rkPLiimtPKslLR~~~a~-S~~~el~~~~F~~vl~d~~~~ 784 (906)
T COG0567 706 SARLERFLQLCAENNMQVVVPSTPAQYFHLLRRQALRDFRKPLIVMTPKSLLRHKLAV-SSLEELTEGTFQPVLEDIDEL 784 (906)
T ss_pred cchhHHHHHhhHHhCCEEEecCcHHHHHHHHHHHHhhcccCceEecChhhhhhccccC-Cchhhhchhhhhhhhcccccc
Confidence 7655455443 348999999999999999975443 346899998888764311000 000011111111 1111
Q ss_pred C--CcEEEEEechhhHHHHHHHHHHHhCC-CCeEEeecCccccccHHHHHHHhccC----CeEEEEcCCC-CCChH
Q 004968 587 G--KDVALLGYGAMVQNCLKARALLSKLG-IDVTVADARFCKPLDIKLVRELCQNH----TFLITVEEGS-IGGFG 654 (721)
Q Consensus 587 G--~dv~Iva~Gs~v~~al~Aa~~L~~~G-i~v~VId~~~l~PlD~e~i~~l~~~~----~~vvvvEe~~-~gG~g 654 (721)
+ -.-+++|.|-+.....+.. ++.| .++-++.+..|.||+.+.+.+.++++ ..+.+-||.. .|-|.
T Consensus 785 ~~~v~rvvlcSGKvyydl~~~r---~~~g~~dvaiiRiEqLyPfP~~~l~~~l~~y~~~~e~vW~QEEp~N~Gaw~ 857 (906)
T COG0567 785 DPKVKRVVLCSGKVYYDLLEQR---EKDGRDDVAIVRIEQLYPFPAKALAALLAKYPNVKEFVWCQEEPKNQGAWY 857 (906)
T ss_pred ccceeeEEeeccchHHHHHHHH---hhcCCcceeEEeeecccCchHHHHHHHHHhccccccccccccCCCccccHH
Confidence 1 2446777787766555443 4444 47889999999999999998876554 4556667765 57776
|
|
| >KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.6e-07 Score=97.80 Aligned_cols=134 Identities=13% Similarity=0.098 Sum_probs=83.2
Q ss_pred cCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCC-CcCCCccCCCCcchh
Q 004968 191 AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRH-SLHPKIEESPKTSIN 269 (721)
Q Consensus 191 ~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~-~s~~t~~~~~~~~~g 269 (721)
.|.||-|++.|++.|++ .+++.|||+-||++| |.+.=++.++.++++|+++||.||+. ....+
T Consensus 429 fgTMGVG~Gfalaaa~~----~P~~~V~~veGDsaF--GfSaME~ET~vR~~Lpvv~vV~NN~Giyg~d~---------- 492 (571)
T KOG1185|consen 429 FGTMGVGLGFALAAALA----APDRKVVCVEGDSAF--GFSAMELETFVRYKLPVVIVVGNNNGIYGLDD---------- 492 (571)
T ss_pred ccccccchhHHHHHHhh----CCCCeEEEEecCccc--CcchhhHHHHHHhcCCeEEEEecCCcccccCc----------
Confidence 36677766666666665 589999999999999 67777899999999999998886643 22111
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~ 349 (721)
..|.++++. .....-.+. .... +-....+.++||-+..-+ ..+++|..+++
T Consensus 493 ------------~~~~~I~e~---~~~~~~p~~-~l~~----------~~rY~~v~ka~G~kG~~v---~t~~el~~~l~ 543 (571)
T KOG1185|consen 493 ------------DGWKQISEQ---DPTLDLPPT-ALLA----------NTRYDKVAKAFGGKGYFV---STVEELLAALQ 543 (571)
T ss_pred ------------ccHHHHhhc---CcccCCCcc-cccc----------cccHHHHHHHcCCCceee---CCHHHHHHHHH
Confidence 111122100 000000000 0000 001133556777554323 58999999999
Q ss_pred HHHhcCCCCCEEEEEEEeccC
Q 004968 350 EVASLGSMGPVLVHVVTEENR 370 (721)
Q Consensus 350 ~a~~~~~~~P~lI~v~T~kg~ 370 (721)
++... +++|++|.+...+..
T Consensus 544 ~a~q~-~~~psvINVlI~p~~ 563 (571)
T KOG1185|consen 544 QACQD-TDKPSVINVLIGPTA 563 (571)
T ss_pred HHHhc-CCCCeEEEEEecccc
Confidence 88764 569999999986654
|
|
| >KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.5e-06 Score=94.94 Aligned_cols=239 Identities=15% Similarity=0.189 Sum_probs=155.0
Q ss_pred HHHHcCCCeEEEecCCCCccC------hH----------HHHHhCCC----cEeeccccHHHHHHHHHHHHhCC--CeeE
Q 004968 413 MEAEKDKDIVVVHAGMEMDLS------LQ----------LFQEKFPE----RYFDVGMAEQHAVTFSAGLACGG--LKPF 470 (721)
Q Consensus 413 ~~~~~d~~iv~i~ad~~~~~~------l~----------~f~~~fp~----R~~d~GIaE~~~v~~AaGlA~~G--~~p~ 470 (721)
.++++.-.|-+-+.|+..||= |. .+..-.|+ -+-|..++|-+.+|+-.|.+++- ..++
T Consensus 661 sLl~EG~hVRlSGQDVERGTFShRH~VLHDQ~~d~~~y~PlnhL~~~Qa~ytV~NSSLSEygVLGFElGYsm~sPNaLVl 740 (1017)
T KOG0450|consen 661 SLLKEGIHVRLSGQDVERGTFSHRHHVLHDQEVDKRTYIPLNHLWPNQAPYTVCNSSLSEYGVLGFELGYSMASPNALVL 740 (1017)
T ss_pred HHHhcCceEEeecccccccccccchhhhcccccCcceecchhhcCCCCCceeeeccchhhhheecceecccccCCCceEE
Confidence 345666677778888876641 10 11111233 46689999999999999999994 5556
Q ss_pred EEe-cHhhH---HHHHHHHHHHhh---cCCcceEEEEcCCCCcCCCCCCcCcHHHHHHHcc-------------------
Q 004968 471 CII-PSAFL---QRAYDQVVNDVD---QQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSC------------------- 524 (721)
Q Consensus 471 ~~t-ys~Fl---~ra~dqi~~~~a---~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~------------------- 524 (721)
.+. |.+|. |..+||.+..-- +.+.-+|+...| |+-| -||-|+..---.|+..
T Consensus 741 WEAQFGDFaNtAQ~IiDQFIssGqaKW~rqsGlVllLPH-GyeG-~GPEHSSaR~ERfLQm~nddp~~~p~~~~~~~~Ql 818 (1017)
T KOG0450|consen 741 WEAQFGDFANTAQCIIDQFISSGQAKWVRQSGLVLLLPH-GYEG-MGPEHSSARPERFLQMSNDDPDVFPDEEEFLQRQL 818 (1017)
T ss_pred eehhhccccccchhhHHhHhccchhhhhhhcCeEEEccC-CcCC-CCcccccccHHHHHHhccCCCccCCcccHHHHHHH
Confidence 654 88885 888999753311 234456766666 5545 4888985422122211
Q ss_pred -CCCcEEEeeCCHHHHHHHHHHHHHhC-CCCEEEEecCCCccccc----CCC-CCCcce-----ecCceEEEEeCCcEEE
Q 004968 525 -LPNMIVMAPSDEDELVDMVATVASID-DRPVCFRYPRGAIVRTD----LPG-YRGIPI-----EIGKGKVLVEGKDVAL 592 (721)
Q Consensus 525 -iPnl~V~~Psd~~E~~~~l~~a~~~~-~~P~~ir~~r~~~~~~~----~p~-~~~~~~-----~~gk~~vl~eG~dv~I 592 (721)
--||+|+.+++|.....+++.-+.+. .+|.+|+.|+....+.+ +.+ .++..+ +-||...-.++-+=+|
T Consensus 819 ~dcNw~vvn~tTPaNyfHvLRRQi~~~FRKPliif~pKsLLRHp~arS~~~ef~~g~~fq~vi~e~g~~~~~pe~vkrlv 898 (1017)
T KOG0450|consen 819 QDCNWQVVNCTTPANYFHVLRRQIHRPFRKPLIIFTPKSLLRHPEARSSFSEFDEGTGFQRVIPEDGKAAQNPENVKRLV 898 (1017)
T ss_pred hcCCeEEEecCChHHHHHHHHHHhhhcccCceEEeccHHhhcCccccCCHHHhccCCCCceeccccccccCChhhceEEE
Confidence 24799999999999999998776543 57999999987653211 100 001111 1122222223446678
Q ss_pred EEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccC---CeEEEEcCCC-CCChH
Q 004968 593 LGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNH---TFLITVEEGS-IGGFG 654 (721)
Q Consensus 593 va~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~---~~vvvvEe~~-~gG~g 654 (721)
+++|-.....-++.+.... --++.+..+-.|.||+.+++++-++++ +.+..-||+. .|.|.
T Consensus 899 ~csGkVyydL~k~Rk~~~~-~~~vAi~RvEQl~PFp~dli~~e~~~YpnaEivWcQEE~~NmG~w~ 963 (1017)
T KOG0450|consen 899 FCSGKVYYDLTKERKEVGL-EGDVAITRVEQLSPFPFDLIQQELNKYPNAEIVWCQEEHKNMGAWD 963 (1017)
T ss_pred EecceEehhhhHHHHhcCc-ccceeEEEeeccCCCcHHHHHHHHHhCCCceeeehhhhhcccCchh
Confidence 9999988777666655431 236888999999999999998877665 4667779987 57664
|
|
| >KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.3e-07 Score=102.15 Aligned_cols=58 Identities=22% Similarity=0.230 Sum_probs=49.5
Q ss_pred cCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCC-EEEEEECCCC
Q 004968 191 AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSN-MIVILNDSRH 254 (721)
Q Consensus 191 ~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~p-livIv~dN~~ 254 (721)
-|++|+++++++|+|.|. ++++|+.++|||+++ ++.+++.++.+|++| .+|++||++|
T Consensus 414 wgsIG~svga~lG~a~a~----~e~rvilfiGDGs~q--lTvQeiStmir~gl~~~if~~NN~GY 472 (561)
T KOG1184|consen 414 WGSIGWSVGATLGYAQAA----PEKRVILFIGDGSFQ--LTVQEISTMIRWGLKPIIFLINNGGY 472 (561)
T ss_pred Eeeccccchhhhhhhhcc----CCceEEEEecCccce--eeHHHHHHHHhcCCCcEEEEEeCCce
Confidence 489999999999999995 479999999999998 888999999999955 5555555566
|
|
| >COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.1e-06 Score=99.41 Aligned_cols=126 Identities=22% Similarity=0.328 Sum_probs=90.4
Q ss_pred cCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcc-cchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 191 AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTM-AGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 191 ~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~-~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+-.+|.||++|-|++++. .+++|++||||.|. .|+ .++.+|.+.+.|++++|.||..+.+..+|..+...+.
T Consensus 427 t~~mGssig~a~g~~~~~-----~k~~va~iGDsTF~HsGi--~~l~nAV~n~~~~~~vvLdN~~tAMTGgQp~pg~~~~ 499 (640)
T COG4231 427 TTMMGSSIGIAGGLSFAS-----TKKIVAVIGDSTFFHSGI--LALINAVYNKANILVVVLDNRTTAMTGGQPHPGTGVA 499 (640)
T ss_pred hhhccchhhhcccccccc-----CCceEEEeccccccccCc--HHHHHHHhcCCCeEEEEEeccchhccCCCCCCCcccc
Confidence 345677888888888763 38999999999985 555 5799999999999999999998655444433221111
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~ 349 (721)
+. |.+-.+ -.+ .++.+++|..++.++|-+|.+++.++++
T Consensus 500 ~~---------------------------g~~~~~--i~i------------ee~~r~~Gv~~v~~vdp~~~~~~~~~~k 538 (640)
T COG4231 500 AE---------------------------GTKSTA--IVI------------EEVVRAMGVEDVETVDPYDVKELSEAIK 538 (640)
T ss_pred cC---------------------------CCccce--eEh------------hHhhhhcCceeeeccCCcchHHHHHHHH
Confidence 11 100000 000 3456778999998999999999999999
Q ss_pred HHHhcCCCCCEEEEEEE
Q 004968 350 EVASLGSMGPVLVHVVT 366 (721)
Q Consensus 350 ~a~~~~~~~P~lI~v~T 366 (721)
++++. .+|.+|..+-
T Consensus 539 eale~--~gpsViiak~ 553 (640)
T COG4231 539 EALEV--PGPSVIIAKR 553 (640)
T ss_pred HHhcC--CCceEEEEcC
Confidence 99994 7899987653
|
|
| >COG3960 Glyoxylate carboligase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.3e-05 Score=83.91 Aligned_cols=135 Identities=19% Similarity=0.230 Sum_probs=91.1
Q ss_pred cCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhh
Q 004968 191 AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINA 270 (721)
Q Consensus 191 ~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~ 270 (721)
+|++|+.||+|+|.-.| .+++.||++.||-.|+ ...|+|...+++|+|.|-|+-||.| .|-
T Consensus 418 agplgwtipaalgv~~a----dp~r~vvalsgdydfq--fmieelavgaq~k~pyihv~vnnay-------------lgl 478 (592)
T COG3960 418 AGPLGWTIPAALGVCAA----DPKRNVVAISGDYDFQ--FLIEELAVGAQFKIPYIHVLVNNAY-------------LGL 478 (592)
T ss_pred cCCcccccchhhceeec----CCCCceEEeecCchHH--HHHHHHhhhhcccCceEEEEecchH-------------HHH
Confidence 69999999999999776 5799999999999997 7889999999999999999999998 332
Q ss_pred hhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcc---cCCCccceeeeeCceEEeccCCCCHHHHHHH
Q 004968 271 LSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM---IGPQGSTLFEELGLYYIGPVDGHNIEDLISV 347 (721)
Q Consensus 271 l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~a 347 (721)
+ +.-+|- | .+-- .+.-.+++....- .+-+...+.|++|++.+++ .+++++..+
T Consensus 479 i-rqaqr~-----f--------~mdy-------~v~laf~nin~~~~~gygvdhv~v~eglgckairv---~~p~e~a~a 534 (592)
T COG3960 479 I-RQAQRA-----F--------DMDY-------CVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRV---FKPEDIAPA 534 (592)
T ss_pred H-HHHHhc-----C--------Cccc-------eeeehhhccCCccccccCccceeehhccCceeEEe---cChHHhhHH
Confidence 2 100100 0 0000 0000000000000 0112356789999999988 577888888
Q ss_pred HHHHHhc--CCCCCEEEEEEEec
Q 004968 348 LQEVASL--GSMGPVLVHVVTEE 368 (721)
Q Consensus 348 l~~a~~~--~~~~P~lI~v~T~k 368 (721)
|++++.. +..-|+++++.-++
T Consensus 535 f~~a~~lm~eh~vpvvve~iler 557 (592)
T COG3960 535 FEQAKALMAQHRVPVVVEVILER 557 (592)
T ss_pred HHHHHHHHHhcCCCeeeehHHHH
Confidence 8877542 23569999886544
|
|
| >COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.2e-05 Score=85.66 Aligned_cols=133 Identities=17% Similarity=0.214 Sum_probs=95.8
Q ss_pred CcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhh
Q 004968 194 GCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSS 273 (721)
Q Consensus 194 ~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~ 273 (721)
-|-+++.|.|+.+|.+ +..||++-|||..- +.-...+..+...+.++++||.||+..++...+.|++.+.|+..+
T Consensus 72 ~gra~a~atGik~A~~----~l~Viv~gGDG~~~-dIG~~~l~h~~~Rn~dit~iv~DNevYgnTggQ~S~tTp~G~~t~ 146 (294)
T COG1013 72 HGRAAAVATGIKLANP----ALSVIVIGGDGDAY-DIGGNHLIHALRRNHDITYIVVDNEVYGNTGGQASPTTPKGAKTK 146 (294)
T ss_pred cCcchhhHHHHHHhcc----CCeEEEEecchhHh-hhhhHHHHHHHHcCCCeEEEEECCeecccCCCccCCCCCCCceee
Confidence 3567889999999865 67999999999543 355678999999999999999999987888888888888886643
Q ss_pred hhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHh
Q 004968 274 TLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVAS 353 (721)
Q Consensus 274 ~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~ 353 (721)
+... |+... .+ -+...++-+.|..|+..+---++.++.+.+++|.+
T Consensus 147 t~p~---------------------Gk~~~---~k----------~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~kA~~ 192 (294)
T COG1013 147 TTPY---------------------GKRSE---KK----------KDPGLLAMAAGATYVARASVGDPKDLTEKIKKAAE 192 (294)
T ss_pred ecCC---------------------CCCcC---CC----------CCHHHHHHHCCCCeEEEecccCHHHHHHHHHHHHh
Confidence 2211 11000 00 01133455677777655443458889898888887
Q ss_pred cCCCCCEEEEEEEe
Q 004968 354 LGSMGPVLVHVVTE 367 (721)
Q Consensus 354 ~~~~~P~lI~v~T~ 367 (721)
.+||.+||+.+-
T Consensus 193 --~~Gps~I~v~sP 204 (294)
T COG1013 193 --HKGPSFIDVLSP 204 (294)
T ss_pred --ccCCeEEEEecC
Confidence 479999999874
|
|
| >PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00074 Score=65.66 Aligned_cols=144 Identities=15% Similarity=0.146 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHcCC-CeEEEecCCCCccChHHHHH---h------------C---CCcEeeccccHHHHHHHHHHHHhC
Q 004968 405 DCFIEALVMEAEKDK-DIVVVHAGMEMDLSLQLFQE---K------------F---PERYFDVGMAEQHAVTFSAGLACG 465 (721)
Q Consensus 405 ~~~~~~L~~~~~~d~-~iv~i~ad~~~~~~l~~f~~---~------------f---p~R~~d~GIaE~~~v~~AaGlA~~ 465 (721)
.++++.|.++++.+| ++-++++|-..|..|....+ + + +++-+..-++|+.+.|+..|+.++
T Consensus 2 ~~lg~~l~dv~~~N~~nfRvf~PDEt~SNrL~~v~e~t~r~w~~~~~~~~~~~~~~~~G~V~e~LSEh~c~G~leGY~Lt 81 (179)
T PF03894_consen 2 RVLGKYLRDVIKLNPRNFRVFGPDETASNRLNAVFEVTNRQWMARILPPDDDEHLAPGGRVMEVLSEHQCQGWLEGYLLT 81 (179)
T ss_dssp HHHHHHHHHHHHHSTTTEEEEESS-TTTTT-GGGGGT--EE--S----TTT-TTEESS-SEEE-S-HHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhCCCcceeECCCcchhhchHHHHHhcccccccccCCCcchhhcccCCeeeeecCHHHHHHHHHHHHhc
Confidence 467788888888776 58899999888877743221 1 1 234444459999999999999999
Q ss_pred CCeeEEEecHhhH---HHHHHHHHHHhh---c----CCcc-eEEEEcCCCC-cCCCCCCcCcHHHH-HHHccCCC-cEEE
Q 004968 466 GLKPFCIIPSAFL---QRAYDQVVNDVD---Q----QRLP-VRFVITSAGL-VGSDGPTQCGAFDI-TFMSCLPN-MIVM 531 (721)
Q Consensus 466 G~~p~~~tys~Fl---~ra~dqi~~~~a---~----~~lp-Vv~v~~~~G~-~G~dG~TH~~~~di-a~~~~iPn-l~V~ 531 (721)
|..-++++|-.|+ .-++.|-...+- . ...| +.++.+.-.. -+.+|-|||...=+ .++...|+ +.||
T Consensus 82 Grhglf~sYEAF~~ivdsM~~Qh~Kwl~~~~~~~wR~~~~SlN~l~TS~~wrQdhNG~SHQdPgfi~~~~~k~~~~~Rvy 161 (179)
T PF03894_consen 82 GRHGLFASYEAFAHIVDSMLNQHAKWLRHARELPWRAPIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVLNKKPDVVRVY 161 (179)
T ss_dssp T-EEEEEEEGGGGGGGHHHHHHHHHHHHHHHH-TTS---B-EEEEEES-CCG-TTT-GGG---THHHHHHCC--T-EEEE
T ss_pred CCcccccccchhHHHHHHHHHHHHHHHHHHHhCcCCCCCcceeEEeeccceecCCCCcccCCChHHHHHHhcCcccceee
Confidence 9999999998886 334444322111 1 1233 3333343333 47899999944333 34444455 5899
Q ss_pred eeCCHHHHHHHHHHHHH
Q 004968 532 APSDEDELVDMVATVAS 548 (721)
Q Consensus 532 ~Psd~~E~~~~l~~a~~ 548 (721)
.|.|++-+..++..|++
T Consensus 162 lPpDANtlLav~~~clr 178 (179)
T PF03894_consen 162 LPPDANTLLAVMDHCLR 178 (179)
T ss_dssp E-SSHHHHHHHHHHHHH
T ss_pred cCCcHhHHHHHHHHHhc
Confidence 99999999999998875
|
PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A. |
| >KOG0523 consensus Transketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00044 Score=78.14 Aligned_cols=59 Identities=20% Similarity=0.284 Sum_probs=52.8
Q ss_pred eeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccccC
Q 004968 324 LFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGA 388 (721)
Q Consensus 324 l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~ 388 (721)
.||++||+.. .|||||+++|.++|.+++.. .++|++|.+.|.+|+|.+..+ +..|||.+
T Consensus 200 r~ea~g~~~~-~V~~~d~d~i~ka~~~a~~~-k~kpt~i~~~t~~g~G~~~ig----~~~~Hg~p 258 (632)
T KOG0523|consen 200 RFEAFGWNVI-IVDGGDVDEIRKAIGKAKSV-KGKPTAIKATTFIGRGSPYIG----SESVHGAP 258 (632)
T ss_pred HHHHhCceEE-EEcCcCHHHHHHHHhhhhhc-cCCceeeeeeeeeecCccccc----cccccCCc
Confidence 6899999998 89999999999999999865 578999999999999988765 68999974
|
|
| >COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00018 Score=80.98 Aligned_cols=212 Identities=19% Similarity=0.260 Sum_probs=115.7
Q ss_pred cccCCCccccCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHHhC
Q 004968 82 LDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTG 161 (721)
Q Consensus 82 l~~i~~p~~~~~~~~~~l~~la~eiR~~~~~~~~~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltG 161 (721)
++.|.-+...++-..+++..+.+..|..+.+... +| ++....+...|-... +|+|.++....-- -
T Consensus 336 ~~~~~~~~~~~~~Wl~~~~~~~~~~~~~v~~~~~---~~---~~~e~~~a~~l~~~l-p~~~~LFvgNSmp---V----- 400 (566)
T COG1165 336 ARSIHPAGRIRKPWLDEWLALNEKARQAVRDQLA---AE---ALTEAHLAAALADLL-PPQDQLFVGNSMP---V----- 400 (566)
T ss_pred HHHhccccccccHHHHHHHHHHHHHHHHHHHHhc---cc---CchhhHHHHHHHHhC-CCCCeEEEecCch---h-----
Confidence 4445544444555677777777888877766654 22 222222222222211 5688887743310 0
Q ss_pred chhhhHHHHhh-CCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhh
Q 004968 162 RRSLIHTLRKK-DGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGY 240 (721)
Q Consensus 162 r~~~~~~~r~~-ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~ 240 (721)
|. +..+-+. .+..-|.+| |+...-..+|-|+|++.|. ..++|+++||=++-.-++ +|-....
T Consensus 401 Rd--vd~~~~~~~~~~v~sNR--------GA~GIDG~vSTA~Gi~~a~-----~~ptv~liGDLS~lhD~N--gLl~~k~ 463 (566)
T COG1165 401 RD--VDALGQLPAGYRVYSNR--------GASGIDGTVSTALGIARAT-----QKPTVALIGDLSFLHDLN--GLLLLKK 463 (566)
T ss_pred hh--HHHhccCccCceeecCC--------CccccchhHHHHhhhhhhc-----CCceEEEEechhhhhccc--hHhhcCC
Confidence 10 1111111 223333344 2222223578899999874 567999999999854333 4555666
Q ss_pred cCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCC
Q 004968 241 LDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQ 320 (721)
Q Consensus 241 ~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 320 (721)
...|++|||.||+. |++-.+|..-.....+. ..+ |.+- .-+
T Consensus 464 ~~~~ltIvv~NNnG--------------GgIF~~Lp~~~~~~~fe----~~F------~tPh---------------~ld 504 (566)
T COG1165 464 VPQPLTIVVVNNNG--------------GGIFSLLPQAQSEPVFE----RLF------GTPH---------------GLD 504 (566)
T ss_pred CCCCeEEEEEeCCC--------------ceeeeeccCCCCcchHH----Hhc------CCCC---------------CCC
Confidence 66888777766653 11211121111111011 100 1100 013
Q ss_pred ccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEecc
Q 004968 321 GSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEEN 369 (721)
Q Consensus 321 ~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg 369 (721)
++.+++.||+.|..+ ++++++.++++..-. ..+-++||++|.+-
T Consensus 505 F~~la~~y~l~y~~~---~s~~~l~~~~~~~~~--~~g~~viEvkt~r~ 548 (566)
T COG1165 505 FAHLAATYGLEYHRP---QSWDELGEALDQAWR--RSGTTVIEVKTDRS 548 (566)
T ss_pred HHHHHHHhCcccccc---CcHHHHHHHHhhhcc--CCCcEEEEEecChh
Confidence 355677889999877 899999999988765 36789999999764
|
|
| >cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0015 Score=63.23 Aligned_cols=114 Identities=16% Similarity=0.165 Sum_probs=81.8
Q ss_pred CCcEeeccccHHHHHHHHHHHHhCCCeeEEEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCC--CCCcCcHHHH
Q 004968 442 PERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSD--GPTQCGAFDI 519 (721)
Q Consensus 442 p~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~d--G~TH~~~~di 519 (721)
.-|++.+- .|+.++.+|.|.+..|.+.++.+..+.+..+.+.+.+. ...+.|++++....+..+.. ...|+.....
T Consensus 41 ~i~~i~~~-~E~~A~~~A~g~~r~~~~v~~~~~gpG~~n~~~~l~~a-~~~~~P~v~i~g~~~~~~~~~~~~~~~~~~~~ 118 (160)
T cd07034 41 GGVVVQAE-SEHAAAEAAIGASAAGARAMTATSGPGLNLMAEALYLA-AGAELPLVIVVAQRPGPSTGLPKPDQSDLMAA 118 (160)
T ss_pred CcEEEEeC-CHHHHHHHHHHHHhhCCcEEEeeCcchHHHHHHHHHHH-HhCCCCEEEEEeeCCCCCCCCCCcCcHHHHHH
Confidence 35888886 99999999999999998855567889998999988544 45689999987554443222 1223333333
Q ss_pred HHHccCCCcEEEeeCCHHHHHHHHHHHHHh---CCCCEEEEec
Q 004968 520 TFMSCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYP 559 (721)
Q Consensus 520 a~~~~iPnl~V~~Psd~~E~~~~l~~a~~~---~~~P~~ir~~ 559 (721)
.+++ |-.-++.+.+++|+..++..|+.. ..+|++++++
T Consensus 119 ~~~~--~~~~~~~~~~~~~~~~~~~~A~~~a~~~~~Pv~l~~~ 159 (160)
T cd07034 119 RYGG--HPWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVLSD 159 (160)
T ss_pred HhCC--CCEEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 3332 345678899999999999888863 2479998764
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th |
| >TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0011 Score=72.89 Aligned_cols=125 Identities=18% Similarity=0.302 Sum_probs=88.0
Q ss_pred HHhCCC-cEeeccccHHHHHHHHHHHHhC-CCeeEEEecHhhHHHHHHHHHHH--hhcCCcceEEEEcCCCCcC-CCCCC
Q 004968 438 QEKFPE-RYFDVGMAEQHAVTFSAGLACG-GLKPFCIIPSAFLQRAYDQVVND--VDQQRLPVRFVITSAGLVG-SDGPT 512 (721)
Q Consensus 438 ~~~fp~-R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~tys~Fl~ra~dqi~~~--~a~~~lpVv~v~~~~G~~G-~dG~T 512 (721)
.+..|+ |++-+ -.|..+|++|+|+.++ |.+|++.+-.+.+..+...+... ....++|+++++..+|-.| .|=|+
T Consensus 21 ~~~~~~~~~i~~-~~E~~av~iaaG~~latG~~~~v~mQnSGlGn~vN~l~SL~~~~~y~iP~l~~i~~RG~~g~~depq 99 (361)
T TIGR03297 21 TDNNRDLRHVIA-ANEGAAVGLAAGAYLATGKRAAVYMQNSGLGNAVNPLTSLADTEVYDIPLLLIVGWRGEPGVHDEPQ 99 (361)
T ss_pred HhcCCCceEEec-CCchHHHHHHHHHHHhcCCccEEEEecCchhhhhhHHHhhccccccCcCeeEEEecCCCCCCCCCch
Confidence 335544 66655 6799999999999999 99999999888888788877444 2346999999999999876 66788
Q ss_pred cC--cHHHHHHHccCCCcEEEe-eCCHHHHHHHHHHHHH---hCCCCEEEEecCCCcc
Q 004968 513 QC--GAFDITFMSCLPNMIVMA-PSDEDELVDMVATVAS---IDDRPVCFRYPRGAIV 564 (721)
Q Consensus 513 H~--~~~dia~~~~iPnl~V~~-Psd~~E~~~~l~~a~~---~~~~P~~ir~~r~~~~ 564 (721)
|. +.--..++..+ ++.... |.+..|....+..|++ ..++|+.+.++++...
T Consensus 100 h~~~G~~t~~lL~~~-~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~p~a~l~~~~~~~ 156 (361)
T TIGR03297 100 HVKQGRITLSLLDAL-EIPWEVLSTDNDEALAQIERALAHALATSRPYALVVRKGTFA 156 (361)
T ss_pred hhHHhHHHHHHHHHc-CCCEEECCCChHHHHHHHHHHHHHHHHHCCCEEEEEcccccc
Confidence 84 44333444432 333333 4566666555555543 3578999999887653
|
This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A |
| >cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00035 Score=75.92 Aligned_cols=116 Identities=14% Similarity=0.227 Sum_probs=82.3
Q ss_pred CCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhh
Q 004968 214 RECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKG 293 (721)
Q Consensus 214 ~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~ 293 (721)
+..||++-|||..- .+-+.++.+|...+.|+++||.||...+....+.|.++|.|+..++-.
T Consensus 151 ~~~v~v~gGDG~~y-dIG~~~l~ha~~r~~ni~~iv~DNe~Y~nTGgQ~S~tTp~Ga~t~tsp----------------- 212 (365)
T cd03377 151 KKSVWIIGGDGWAY-DIGYGGLDHVLASGENVNILVLDTEVYSNTGGQASKATPLGAVAKFAA----------------- 212 (365)
T ss_pred ccceEEEecchhhh-ccchhhHHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCcCccCC-----------------
Confidence 36899999999653 355678999999999999999999977776667778888887643211
Q ss_pred hhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccC-CCCHHHHHHHHHHHHhcCCCCCEEEEEEEe
Q 004968 294 MTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVD-GHNIEDLISVLQEVASLGSMGPVLVHVVTE 367 (721)
Q Consensus 294 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vd-Ghd~~~l~~al~~a~~~~~~~P~lI~v~T~ 367 (721)
.|..... + +...++-++|..|+..+- |.++.++.+++++|.+ .+||.+|++.+.
T Consensus 213 ----~Gk~~~k---------k-----d~~~ia~a~g~~YVA~~s~~~~~~~~~~~i~eA~~--~~Gps~I~v~sP 267 (365)
T cd03377 213 ----AGKRTGK---------K-----DLGMIAMSYGNVYVAQIALGANDNQTLKAFREAEA--YDGPSLIIAYSP 267 (365)
T ss_pred ----CCCCCCC---------c-----CHHHHHHHcCCCEEEEEecccCHHHHHHHHHHHhc--CCCCEEEEEEcc
Confidence 1111000 0 112344456767765543 3589999999999988 489999999874
|
This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra |
| >cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0018 Score=62.37 Aligned_cols=114 Identities=17% Similarity=0.193 Sum_probs=83.9
Q ss_pred CcEeeccccHHHHHHHHHHHHhCCCe-eEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHH
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACGGLK-PFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDIT 520 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~G~~-p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia 520 (721)
-|++.+ ..|..++.+|.|.+..+.| +++. ++.+.+..++..+ ..+...++|++++....+.....-.+||......
T Consensus 35 ~~~i~~-~~E~~A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l-~~A~~~~~Pll~i~~~~~~~~~~~~~~q~~d~~~ 112 (155)
T cd07035 35 IRYILV-RHEQGAVGMADGYARATGKPGVVLVTSGPGLTNAVTGL-ANAYLDSIPLLVITGQRPTAGEGRGAFQEIDQVA 112 (155)
T ss_pred CEEEEe-CCHHHHHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHH-HHHHhhCCCEEEEeCCCccccccCCcccccCHHH
Confidence 367765 7999999999999999654 4443 4678888888877 4556779999999866555333333466555666
Q ss_pred HHccCCCcEEEeeCCHHHHHHHHHHHHHhC----CCCEEEEec
Q 004968 521 FMSCLPNMIVMAPSDEDELVDMVATVASID----DRPVCFRYP 559 (721)
Q Consensus 521 ~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~----~~P~~ir~~ 559 (721)
+++.+-.+ .+...+++|+...+..|++.. .+|++|.+|
T Consensus 113 ~~~~~~~~-~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ip 154 (155)
T cd07035 113 LFRPITKW-AYRVTSPEEIPEALRRAFRIALSGRPGPVALDLP 154 (155)
T ss_pred HHHHHhce-EEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEEec
Confidence 77777655 677789999999999888753 469998775
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio |
| >PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0022 Score=79.30 Aligned_cols=65 Identities=12% Similarity=0.002 Sum_probs=52.7
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcc-cchHHHHHHHhhhcCCCEEEEEECCCCCcCCCc
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTM-AGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKI 260 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~-~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~ 260 (721)
+.-+||.+++.++|++.+ .++++||+++|||.+. .|+ -++.+|.+.+.|++++|.+|..+.+..+
T Consensus 479 ~~~~MG~eg~~~~G~a~f----~~~~hv~a~iGDgTffHSG~--~al~~AV~~~~nit~~IL~N~~vAMTGg 544 (1165)
T PRK09193 479 TFTQMGGEGVPWIGQAPF----TDEKHVFQNLGDGTYFHSGL--LAIRAAVAAGVNITYKILYNDAVAMTGG 544 (1165)
T ss_pred eeeccCCcchhhceeccc----cCCCcEEEEeccccchhcCH--HHHHHHHhcCCCeEEEEEeCCcccccCC
Confidence 345788888899998876 3357899999999975 555 4899999999999999999998655443
|
|
| >PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0019 Score=80.08 Aligned_cols=64 Identities=13% Similarity=0.039 Sum_probs=52.5
Q ss_pred cCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcc-cchHHHHHHHhhhcCCCEEEEEECCCCCcCCCc
Q 004968 191 AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTM-AGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKI 260 (721)
Q Consensus 191 ~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~-~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~ 260 (721)
.-+||.+++.++|++.+. .+++||+++|||.+. .|+. +|.+|.+.+.|++++|.||..+.+..+
T Consensus 467 ~~~MG~~g~~~~G~a~~~----~~~~v~a~iGDgTf~HSG~~--al~~AV~~~~nit~~IL~N~~tAMTGg 531 (1159)
T PRK13030 467 LTQMGGEGVDWIGHAPFT----ETKHVFQNLGDGTYFHSGSL--AIRQAVAAGANITYKILYNDAVAMTGG 531 (1159)
T ss_pred eeccCccchhhceecccc----CCCCEEEEeccchhhhcCHH--HHHHHHhcCCCeEEEEEeCCcccccCC
Confidence 347888888999998772 357899999999975 6665 999999999999999999998655433
|
|
| >PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.024 Score=55.77 Aligned_cols=125 Identities=17% Similarity=0.219 Sum_probs=84.5
Q ss_pred HHHHHhCCCcEeeccccHHHHHHHHHHHHhCCCee-EEEe-cHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcC-CCCC
Q 004968 435 QLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKP-FCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVG-SDGP 511 (721)
Q Consensus 435 ~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~G~~p-~~~t-ys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G-~dG~ 511 (721)
+.+.+...=|++.+ -.|++++.+|.|.+..+-+| ++.+ +.+.+..++..+ ..+...+.|++++....+..+ ..+.
T Consensus 32 ~al~~~~~i~~i~~-~~E~~A~~~A~g~ar~~g~~~v~~~~~GpG~~n~~~~l-~~A~~~~~Pvl~i~g~~~~~~~~~~~ 109 (172)
T PF02776_consen 32 DALEKSPGIRFIPV-RHEQGAAFMADGYARATGRPGVVIVTSGPGATNALTGL-ANAYADRIPVLVITGQRPSAGEGRGA 109 (172)
T ss_dssp HHHHHTTTSEEEE--SSHHHHHHHHHHHHHHHSSEEEEEEETTHHHHTTHHHH-HHHHHTT-EEEEEEEESSGGGTTTTS
T ss_pred HHhhhhcceeeecc-cCcchhHHHHHHHHHhhccceEEEeecccchHHHHHHH-hhcccceeeEEEEecccchhhhcccc
Confidence 34444333578875 99999999999999875554 4443 555555555554 245667999999886555532 2467
Q ss_pred CcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 512 TQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 512 TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
.|+......+++.+-.+ .+.+.+++++...++.|+.. ..+|++|.+|...
T Consensus 110 ~q~~~d~~~~~~~~~k~-~~~v~~~~~~~~~~~~A~~~a~~~~~gPv~l~ip~dv 163 (172)
T PF02776_consen 110 FQQEIDQQSLFRPVTKW-SYRVTSPDDLPEALDRAFRAATSGRPGPVYLEIPQDV 163 (172)
T ss_dssp TTSSTHHHHHHGGGSSE-EEEECSGGGHHHHHHHHHHHHHHCSTSEEEEEEEHHH
T ss_pred cccchhhcchhccccch-hcccCCHHHHHHHHHHHHHHhccCCCccEEEEcChhH
Confidence 77666667788877655 56677777777777777653 4789999988754
|
It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B .... |
| >TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.037 Score=53.81 Aligned_cols=110 Identities=18% Similarity=0.266 Sum_probs=71.5
Q ss_pred cccHHHHHHHHHHHHhCCCeeEEEecHhhHHHHHHHHHHHhh-cCCcceEEEEcCCCCcCCCCCCcCc--HHHHHHHccC
Q 004968 449 GMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVD-QQRLPVRFVITSAGLVGSDGPTQCG--AFDITFMSCL 525 (721)
Q Consensus 449 GIaE~~~v~~AaGlA~~G~~p~~~tys~Fl~ra~dqi~~~~a-~~~lpVv~v~~~~G~~G~dG~TH~~--~~dia~~~~i 525 (721)
.-+|..++++|+|.++.|.+|.+.+-.+.+..+...+ ..+. ..+.||+++....|-.|.+-+.|.+ ...-..+..+
T Consensus 40 ~~~ee~aa~~aAg~~~~~~~~~v~~~~sG~gn~~~~l-~~a~~~~~~Pvl~i~g~rg~~~~~~~~q~~~g~~~~~~l~~~ 118 (157)
T TIGR03845 40 LTREEEGVGICAGAYLAGKKPAILMQSSGLGNSINAL-ASLNKTYGIPLPILASWRGVYKEKIPAQIPMGRATPKLLDTL 118 (157)
T ss_pred cCChHHHHHHHHHHHHhcCCcEEEEeCCcHHHHHHHH-HHHHHcCCCCEEEEEeccCCCCCCCccccchhhhhHHHHHHc
Confidence 5789999999999999999998887655555666665 3445 6799999998666654433222221 1111122221
Q ss_pred CCcEEEeeCCHHHHHHHHHHHHH---hCCCCEEEEecCC
Q 004968 526 PNMIVMAPSDEDELVDMVATVAS---IDDRPVCFRYPRG 561 (721)
Q Consensus 526 Pnl~V~~Psd~~E~~~~l~~a~~---~~~~P~~ir~~r~ 561 (721)
++......+++|+ ..+..|++ ..++|++|..++.
T Consensus 119 -~i~~~~i~~~e~~-~~i~~A~~~a~~~~gPv~il~~~~ 155 (157)
T TIGR03845 119 -GIPYTIPREPEEA-KLIEKAISDAYENSRPVAALLDPK 155 (157)
T ss_pred -CCCeEEeCCHHHH-HHHHHHHHHHHhCCCCEEEEEeCC
Confidence 2235555667787 77777764 2458999988764
|
This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363). |
| >PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0089 Score=74.00 Aligned_cols=62 Identities=15% Similarity=0.075 Sum_probs=50.5
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcc-cchHHHHHHHhhhcCCCEEEEEECCCCCcCCC
Q 004968 192 GHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTM-AGQAYEAMSNAGYLDSNMIVILNDSRHSLHPK 259 (721)
Q Consensus 192 G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~-~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t 259 (721)
-+||.+++.++|++-+ .++++||+++|||.+. .|+ -+|.+|.+.+.|++++|.||..+.+..
T Consensus 495 ~~MGgeg~~~~G~a~f----~~~~hv~aniGDgTffHSG~--~alr~AV~~~~nit~kIL~N~avAMTG 557 (1186)
T PRK13029 495 SQMGGEGVAWIGQMPF----SRRRHVFQNLGDGTYFHSGL--LAIRQAIAAGVNITYKILYNDAVAMTG 557 (1186)
T ss_pred eccCcchhhheeeccc----CCCCCEEEEeccccchhcCH--HHHHHHHhcCCCEEEEEEeCcchhccC
Confidence 5688888888888866 2357899999999975 555 489999999999999999999864433
|
|
| >TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.009 Score=75.11 Aligned_cols=115 Identities=15% Similarity=0.241 Sum_probs=82.8
Q ss_pred CeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhh
Q 004968 215 ECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGM 294 (721)
Q Consensus 215 ~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~ 294 (721)
..||++-|||... ++-+.++.++...+.|+.+||.||...+....+.|.++|.|+..++-.
T Consensus 952 ~sv~~~~GDG~~~-diG~~~l~~~~~r~~~v~~i~~dne~Y~nTggQ~S~~tp~g~~t~~~~------------------ 1012 (1165)
T TIGR02176 952 KSVWIIGGDGWAY-DIGYGGLDHVLASGKDVNVLVMDTEVYSNTGGQSSKATPTGAIAKFAA------------------ 1012 (1165)
T ss_pred ceeEEEecchhhh-ccCccchHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCccccCC------------------
Confidence 4799999999653 355678999999999999999999976666666778888887643211
Q ss_pred hhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccC-CCCHHHHHHHHHHHHhcCCCCCEEEEEEEe
Q 004968 295 TKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVD-GHNIEDLISVLQEVASLGSMGPVLVHVVTE 367 (721)
Q Consensus 295 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vd-Ghd~~~l~~al~~a~~~~~~~P~lI~v~T~ 367 (721)
.|.... -+ +...++.++|..|+..+- |.++.++.+++++|.+ .+||.+|++.+.
T Consensus 1013 ---~g~~~~---------kk-----d~~~~a~~~g~~yvA~~~~~~~~~~~~~~~~~A~~--~~G~s~i~~~~p 1067 (1165)
T TIGR02176 1013 ---AGKRTS---------KK-----DLGMMAMTYGYVYVAQVSMGANMQQTLKAFREAEA--YDGPSIVIAYSP 1067 (1165)
T ss_pred ---CCCCCC---------Cc-----CHHHHHHHCCCCEEEEEecccCHHHHHHHHHHHHc--CCCCEEEEEECC
Confidence 011000 00 112345567777776654 5689999999999988 489999999874
|
This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase. |
| >COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.028 Score=52.56 Aligned_cols=110 Identities=14% Similarity=0.178 Sum_probs=76.0
Q ss_pred ccHHHHHHHHHHHHhCCCeeEEEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcH--HHHHHHccCCC
Q 004968 450 MAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGA--FDITFMSCLPN 527 (721)
Q Consensus 450 IaE~~~v~~AaGlA~~G~~p~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~--~dia~~~~iPn 527 (721)
-+|...+|++||+.++|.+|..-+-.+.+-.....+-..-...++|..+++.|+|..+++=+.+-+. .--.++.. -+
T Consensus 49 tREEeg~GIcAGa~lAGkk~ailmQnsGlGNsiNal~SL~~ty~iPl~ml~ShRG~~~E~i~AQVpmGr~~~kiLe~-~~ 127 (172)
T COG4032 49 TREEEGVGICAGAYLAGKKPAILMQNSGLGNSINALASLYVTYKIPLLMLASHRGVLKEGIEAQVPMGRALPKILEG-LE 127 (172)
T ss_pred cchhcceeeehhhhhcCCCcEEEEeccCcchHHHHHHHHHHHhccchhhhhhccchhhcCCccccccchhhHHHHhh-cC
Confidence 4788999999999999999999887777766555443333356899999999999866544443321 11112332 25
Q ss_pred cEEEeeCCHHHHHHHHHHHHH---hCCCCEEEEecC
Q 004968 528 MIVMAPSDEDELVDMVATVAS---IDDRPVCFRYPR 560 (721)
Q Consensus 528 l~V~~Psd~~E~~~~l~~a~~---~~~~P~~ir~~r 560 (721)
+..+.|-.++|...++..+.. ...+|+.+.++-
T Consensus 128 lpt~t~~~p~Ea~~li~~~~~~a~~~s~pv~vlls~ 163 (172)
T COG4032 128 LPTYTIIGPEEALPLIENAILDAFENSRPVAVLLSP 163 (172)
T ss_pred CcccccCCHHHHHHHHHHHHHHHHHcCCceEEEech
Confidence 567899999997776655543 367899887753
|
|
| >cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.97 Score=44.17 Aligned_cols=115 Identities=9% Similarity=-0.031 Sum_probs=78.8
Q ss_pred cEeeccccHHHHHHHHHHHHhCCCeeEEE--ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACGGLKPFCI--IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~G~~p~~~--tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~ 521 (721)
|++. .-.|+++..+|.|.|..--+|-++ ++.+.+..++--+ ..+...+.||+++..........-..+|......+
T Consensus 40 ~~v~-~rhE~~A~~mA~gyar~tg~~~v~~~t~GpG~~n~~~~l-~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~ 117 (164)
T cd07039 40 EFIQ-VRHEEAAAFAASAEAKLTGKLGVCLGSSGPGAIHLLNGL-YDAKRDRAPVLAIAGQVPTDELGTDYFQEVDLLAL 117 (164)
T ss_pred eEEE-eCCHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHH-HHHHhcCCCEEEEecCCcccccCCCCCcccCHHHH
Confidence 6665 489999999999999984344333 4777777776655 35567899999987433221111124676666677
Q ss_pred HccCCCcEEEeeCCHHHHHHHHHHHHHh---CCCCEEEEecCC
Q 004968 522 MSCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYPRG 561 (721)
Q Consensus 522 ~~~iPnl~V~~Psd~~E~~~~l~~a~~~---~~~P~~ir~~r~ 561 (721)
++.+-.+ ...+.++.++...++.|++. ..+|++|-+|..
T Consensus 118 ~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~d 159 (164)
T cd07039 118 FKDVAVY-NETVTSPEQLPELLDRAIRTAIAKRGVAVLILPGD 159 (164)
T ss_pred HHHhhcE-EEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChH
Confidence 8877665 45667888888888877753 458999988764
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ |
| >PRK07586 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.87 E-value=3.2 Score=48.08 Aligned_cols=201 Identities=13% Similarity=0.052 Sum_probs=113.2
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~ 521 (721)
|++.+ --|++++.+|.|.|.. |...+|. ++.+.+..++--+ ..+...+.||+++..........-..+|......+
T Consensus 41 ~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~gl-~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~ 118 (514)
T PRK07586 41 RCVLG-LFEGVATGAADGYARMAGKPAATLLHLGPGLANGLANL-HNARRARTPIVNIVGDHATYHRKYDAPLTSDIEAL 118 (514)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHHCCCEEEEecccHHHHHHHHHH-HHHHhcCCCEEEEecCCchhccCCCcccccchhhh
Confidence 77776 8999999999999987 5444443 5888877777655 35567899999886432221111122444444456
Q ss_pred HccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCCcccc-cCCCCCCc-c---ee----cCc-eEEEEe-
Q 004968 522 MSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGAIVRT-DLPGYRGI-P---IE----IGK-GKVLVE- 586 (721)
Q Consensus 522 ~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~~~~~-~~p~~~~~-~---~~----~gk-~~vl~e- 586 (721)
++.+-.+ .....++.++..+++.|+.. ..+|++|-+|....... +.+..... . .+ +.+ .+.+.+
T Consensus 119 ~~~vtk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~A 197 (514)
T PRK07586 119 ARPVSGW-VRRSESAADVAADAAAAVAAARGAPGQVATLILPADVAWSEGGPPAPPPPAPAPAAVDPAAVEAAAAALRSG 197 (514)
T ss_pred hccccce-eeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEeccchhccccccccccCCCCCCCCCCHHHHHHHHHHHHhc
Confidence 6655333 35567777777777777653 35799999998653211 11100000 0 00 000 012222
Q ss_pred CCcEEEEEechhhHHHHHHHHHHHh-CCCCeEE--e-----ecCcccc-----ccHHHHHHHhccCCeEEEEcC
Q 004968 587 GKDVALLGYGAMVQNCLKARALLSK-LGIDVTV--A-----DARFCKP-----LDIKLVRELCQNHTFLITVEE 647 (721)
Q Consensus 587 G~dv~Iva~Gs~v~~al~Aa~~L~~-~Gi~v~V--I-----d~~~l~P-----lD~e~i~~l~~~~~~vvvvEe 647 (721)
.+-+.|++.|.....+.++...|.+ .|+.+-. . .-+.+-| .-.....+.+++.+.|+++--
T Consensus 198 ~rPvi~~G~g~~~~~a~~~l~~lae~l~~pV~t~~~~~~~~~gkg~~~~~~~~~~~~~~~~~~~~aDlvl~vG~ 271 (514)
T PRK07586 198 EPTVLLLGGRALRERGLAAAARIAAATGARLLAETFPARMERGAGRPAVERLPYFAEQALAQLAGVRHLVLVGA 271 (514)
T ss_pred CCCEEEeCCcccchhHHHHHHHHHHHHCCCEEecccccccccCCCCCCcccccchHHHHHHHHhcCCEEEEECC
Confidence 3467777777765556666665544 4776522 1 0122222 112333456677788887753
|
|
| >cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL) | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.17 Score=49.71 Aligned_cols=115 Identities=13% Similarity=0.099 Sum_probs=68.2
Q ss_pred HhCCCcEeeccc--cHHHHHHHHHHHHhCC-CeeEEEec--HhhHHHHHHHHHHHhhcCCcceEEEEcC-CCCcCCCCCC
Q 004968 439 EKFPERYFDVGM--AEQHAVTFSAGLACGG-LKPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVITS-AGLVGSDGPT 512 (721)
Q Consensus 439 ~~fp~R~~d~GI--aE~~~v~~AaGlA~~G-~~p~~~ty--s~Fl~ra~dqi~~~~a~~~lpVv~v~~~-~G~~G~dG~T 512 (721)
-..|.+++..|. +=-.++.+|.|++++. -++++++. ..|+.- ...+ ..++..++|+++++-. .|. |.....
T Consensus 35 ~~~p~~~~~~~~~g~mG~~lp~AiGa~la~~~~~vv~i~GDG~f~~~-~~el-~ta~~~~lpv~ivv~NN~~~-~~~~~~ 111 (172)
T cd02004 35 PRKPRHRLDAGTFGTLGVGLGYAIAAALARPDKRVVLVEGDGAFGFS-GMEL-ETAVRYNLPIVVVVGNNGGW-YQGLDG 111 (172)
T ss_pred ccCCCcEecCCCCCcccchHHHHHHHHHhCCCCeEEEEEcchhhcCC-HHHH-HHHHHcCCCEEEEEEECccc-ccchhh
Confidence 355788887653 2333666777888875 36777764 455432 2333 4567789997777733 332 211100
Q ss_pred cC-------------cHHHHH-HHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004968 513 QC-------------GAFDIT-FMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 513 H~-------------~~~dia-~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~ 558 (721)
+. ...|.. +.+. -|+..+.-.+.+|+...++.++. .++|++|-.
T Consensus 112 ~~~~~~~~~~~~~~~~~~d~~~la~a-~G~~~~~v~~~~el~~al~~a~~-~~~p~liev 169 (172)
T cd02004 112 QQLSYGLGLPVTTLLPDTRYDLVAEA-FGGKGELVTTPEELKPALKRALA-SGKPALINV 169 (172)
T ss_pred hhhhccCCCceeccCCCCCHHHHHHH-CCCeEEEECCHHHHHHHHHHHHH-cCCCEEEEE
Confidence 00 112222 2232 25667777899999999999976 578988754
|
Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity. |
| >cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.24 Score=48.48 Aligned_cols=113 Identities=12% Similarity=0.136 Sum_probs=72.4
Q ss_pred cEeeccccHHHHHHHHHHHHhCCCeeEEE--ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACGGLKPFCI--IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~G~~p~~~--tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~ 521 (721)
|++.+ -.|++++.||-|.|..--+|-+. ++.+.+..++--+ ..+...+.||+++.........+-.++|......+
T Consensus 37 ~~v~~-rhE~~A~~mAdgyar~sg~~gv~~~t~GpG~~n~~~gl-~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l 114 (162)
T cd07037 37 RLHVR-VDERSAAFFALGLAKASGRPVAVVCTSGTAVANLLPAV-VEAYYSGVPLLVLTADRPPELRGTGANQTIDQVGL 114 (162)
T ss_pred eEEec-cChHHHHHHHHHHHHhhCCCEEEEECCchHHHHHhHHH-HHHHhcCCCEEEEECCCCHHhcCCCCCcccchhhh
Confidence 66665 89999999999999984444443 4778877777655 45567899999987543332222234676666677
Q ss_pred HccCCCcEEEeeCCHHH------HHHHHHHHHHh----CCCCEEEEec
Q 004968 522 MSCLPNMIVMAPSDEDE------LVDMVATVASI----DDRPVCFRYP 559 (721)
Q Consensus 522 ~~~iPnl~V~~Psd~~E------~~~~l~~a~~~----~~~P~~ir~~ 559 (721)
++.+-.+ .....++++ +..+++.|+.. ..+|++|-+|
T Consensus 115 ~~~vtk~-~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 115 FGDYVRW-SVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred ccceeeE-EEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 7765443 233344444 55556655542 3468888654
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim |
| >TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase | Back alignment and domain information |
|---|
Probab=94.48 E-value=1.1 Score=52.93 Aligned_cols=117 Identities=15% Similarity=0.112 Sum_probs=80.4
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEE-EecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~-~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~ 521 (721)
|++.+ -.|++++.+|.|.|.. |...+| .++.+.+..++.-| ..+...+.||+++....+........+|......+
T Consensus 41 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~~~gl-a~A~~~~~Pvl~I~g~~~~~~~~~~~~Q~~d~~~l 118 (579)
T TIGR03457 41 RFIPV-VHEQGAGHMADGFARVTGRMSMVIGQNGPGVTNCVTAI-AAAYWAHTPVVIVTPEAGTKTIGLGGFQEADQLPM 118 (579)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHH-HHHhhcCCCEEEEeCCCccccCCCCCCcccchhhh
Confidence 67775 8999999999999976 655555 35788877777665 45567899999987443332111234676666677
Q ss_pred HccCCCcEEEeeCCHHHHHHHHHHHHHh---CCCCEEEEecCCCc
Q 004968 522 MSCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYPRGAI 563 (721)
Q Consensus 522 ~~~iPnl~V~~Psd~~E~~~~l~~a~~~---~~~P~~ir~~r~~~ 563 (721)
++.+-.+ .....++.++...+..|++. ..+|++|-+|+...
T Consensus 119 ~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv~ 162 (579)
T TIGR03457 119 FQEFTKY-QGHVRHPSRMAEVLNRCFERAWREMGPAQLNIPRDYF 162 (579)
T ss_pred hhcceeE-EEecCCHHHHHHHHHHHHHHHhcCCCCEEEEeCcchh
Confidence 7765443 34456777777777766652 34799999998653
|
Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur. |
| >cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase) | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.44 Score=46.27 Aligned_cols=143 Identities=15% Similarity=0.206 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHcCCCeEEEecCCCCccChHHH-HHhCCCcEeeccccHHHHHHHHHHHHhCCCeeEEEec--HhhHHHHH
Q 004968 406 CFIEALVMEAEKDKDIVVVHAGMEMDLSLQLF-QEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIP--SAFLQRAY 482 (721)
Q Consensus 406 ~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f-~~~fp~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~ty--s~Fl~ra~ 482 (721)
.+.+.|.+.+ . ..+++. |.+. +...-+ ....|.+|+..|-- ...+..|.|++++--+|++++. ..|+.-.-
T Consensus 3 ~~~~~l~~~l-~-d~~vv~--d~G~-~~~~~~~~~~~~~~~~~~gsm-G~~lp~AiGa~~a~~~~Vv~i~GDG~f~m~~~ 76 (157)
T cd02001 3 AAIAEIIEAS-G-DTPIVS--TTGY-ASRELYDVQDRDGHFYMLGSM-GLAGSIGLGLALGLSRKVIVVDGDGSLLMNPG 76 (157)
T ss_pred HHHHHHHHhC-C-CCEEEe--CCCH-hHHHHHHhhcCCCCEEeecch-hhHHHHHHHHHhcCCCcEEEEECchHHHhccc
Confidence 4455565555 3 334433 3332 222222 23557888863321 1123367777765447888875 55653332
Q ss_pred HHHHHHhhcC-CcceEEEE-cCCCCcCCCC--CCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004968 483 DQVVNDVDQQ-RLPVRFVI-TSAGLVGSDG--PTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 483 dqi~~~~a~~-~lpVv~v~-~~~G~~G~dG--~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~ 558 (721)
+ + .-+... ++|+++++ ...++ |.-+ +++....|++-++.--|+.-+...+++|+...++.+++ .++|++|..
T Consensus 77 e-l-~t~~~~~~~~i~~vV~nN~~~-g~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~-~~gp~vi~v 152 (157)
T cd02001 77 V-L-LTAGEFTPLNLILVVLDNRAY-GSTGGQPTPSSNVNLEAWAAACGYLVLSAPLLGGLGSEFAGLLA-TTGPTLLHA 152 (157)
T ss_pred H-H-HHHHHhcCCCEEEEEEeCccc-cccCCcCCCCCCCCHHHHHHHCCCceEEcCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 2 2 233444 58987777 44443 3212 22222223333333335556677899999999999986 688998754
|
Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors. |
| >PRK12474 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.98 E-value=5.3 Score=46.37 Aligned_cols=201 Identities=13% Similarity=0.083 Sum_probs=113.2
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~ 521 (721)
|++.+ --|++++.+|-|.|.. |...+|. ++.+....++--+ ..+-..+.||+++.............||......+
T Consensus 45 ~~i~~-rhE~~A~~mAdgYaR~tg~~gv~~~t~GpG~~N~~~gl-~~A~~d~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~ 122 (518)
T PRK12474 45 RPVLC-LFEGVVTGAADGYGRIAGKPAVTLLHLGPGLANGLANL-HNARRAASPIVNIVGDHAVEHLQYDAPLTSDIDGF 122 (518)
T ss_pred eEEEe-cchHHHHHHHHHHHHHhCCCEEEEEccchhHhHhHHHH-HHHhhcCCCEEEEeccCchhhcCCCCccccCHHHh
Confidence 78876 8999999999999987 6444444 5888877666655 34556799999886432221111123454555567
Q ss_pred HccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCCcccc-cCC--CCCCcce--e----cCc-eEEEEeC
Q 004968 522 MSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGAIVRT-DLP--GYRGIPI--E----IGK-GKVLVEG 587 (721)
Q Consensus 522 ~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~~~~~-~~p--~~~~~~~--~----~gk-~~vl~eG 587 (721)
++.+-.+ .....++.++..+++.|+.. ..+|++|-+|+...... +.+ ....... + +.+ .+.|.+-
T Consensus 123 ~~~vtk~-~~~v~~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~A 201 (518)
T PRK12474 123 ARPVSRW-VHRSASAGAVDSDVARAVQAAQSAPGGIATLIMPADVAWNEAAYAAQPLRGIGPAPVAAETVERIAALLRNG 201 (518)
T ss_pred hhcccce-eeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhhhcccccCCcCCCCCCCCCCCCHHHHHHHHHHHHcC
Confidence 7765443 35568889888888888752 34799999998753211 100 0000000 0 000 1123333
Q ss_pred -CcEEEEEechhhHHHHHHHHHHH-hCCCCeEE--ee-----cCccc-----cccHHHHHHHhccCCeEEEEcC
Q 004968 588 -KDVALLGYGAMVQNCLKARALLS-KLGIDVTV--AD-----ARFCK-----PLDIKLVRELCQNHTFLITVEE 647 (721)
Q Consensus 588 -~dv~Iva~Gs~v~~al~Aa~~L~-~~Gi~v~V--Id-----~~~l~-----PlD~e~i~~l~~~~~~vvvvEe 647 (721)
+-+.|++.|..-..+.+++..|. +.|+.|-. .. -+.+- |+......+++++.+.|+++--
T Consensus 202 ~rPvil~G~g~~~~~a~~~l~~lae~~g~PV~~t~~~~~~~~gkg~~~~~~~~~~~~~~~~~~~~aDlvl~lG~ 275 (518)
T PRK12474 202 KKSALLLRGSALRGAPLEAAGRIQAKTGVRLYCDTFAPRIERGAGRVPIERIPYFHEQITAFLKDVEQLVLVGA 275 (518)
T ss_pred CCcEEEECCccchhhHHHHHHHHHHHHCCCEEEecCcccccCCCCCCCCcccccchHHHHHHHhhCCEEEEECC
Confidence 34555555554444555555554 45777521 11 12222 3333344456677788877663
|
|
| >TIGR02418 acolac_catab acetolactate synthase, catabolic | Back alignment and domain information |
|---|
Probab=93.85 E-value=1.3 Score=51.75 Aligned_cols=116 Identities=12% Similarity=0.075 Sum_probs=81.8
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEE-EecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~-~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~ 521 (721)
|++.+ -.|++++.+|.|.|.. |...+| .++.+.+..++.-+ ..+...+.||+++..........-..||......+
T Consensus 38 ~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~~ 115 (539)
T TIGR02418 38 ELIVV-RHEQNAAFMAQAVGRITGKPGVALVTSGPGCSNLVTGL-ATANSEGDPVVAIGGQVKRADLLKLTHQSMDNVAL 115 (539)
T ss_pred CEEEe-CcHHHHHHHHHHHHHHhCCceEEEECCCCCHhHHHHHH-HHHhhcCCCEEEEeCCCcccccccCcccccchhhh
Confidence 77776 6999999999999986 544444 45888877777665 45567899999987533331111234888777788
Q ss_pred HccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 522 MSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 522 ~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
++.+-.+ .....++.++...+..|++. ..+|++|.+|...
T Consensus 116 ~~~~tk~-~~~i~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~dv 159 (539)
T TIGR02418 116 FRPITKY-SAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQDV 159 (539)
T ss_pred hhcceee-eeecCCHHHHHHHHHHHHHHHhcCCCCCEEEEcChhH
Confidence 8876554 34457788888777777653 2479999998764
|
Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family. |
| >cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.82 Score=44.59 Aligned_cols=113 Identities=14% Similarity=0.118 Sum_probs=73.7
Q ss_pred cEeeccccHHHHHHHHHHHHhCCCeeEEE--ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCc-----C
Q 004968 444 RYFDVGMAEQHAVTFSAGLACGGLKPFCI--IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQ-----C 514 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~G~~p~~~--tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH-----~ 514 (721)
|++. .-.|++++.+|.|.+..- +|-++ +..+.+..++..+ ..+...+.||+++...... .+.....| +
T Consensus 37 ~~i~-~rhE~~A~~mA~gyar~t-~~gv~~~t~GpG~~n~~~gl-~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~ 113 (162)
T cd07038 37 RWVG-NCNELNAGYAADGYARVK-GLGALVTTYGVGELSALNGI-AGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDG 113 (162)
T ss_pred eEEe-eCCHHHHHHHHHHHHHhh-CCEEEEEcCCccHHHHHHHH-HHHHHcCCCEEEEecCCCccccccccceeeccccc
Confidence 5555 489999999999999986 44443 3677777777766 3556779999998743222 12212223 2
Q ss_pred cHH-HHHHHccCCCcEEEeeCCHHHHHHHHHHHHHh---CCCCEEEEecC
Q 004968 515 GAF-DITFMSCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYPR 560 (721)
Q Consensus 515 ~~~-dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~---~~~P~~ir~~r 560 (721)
... ...+++.+-.+ .....++.++..+++.|+.. ..+|++|-+||
T Consensus 114 ~~~d~~~~~~~~tk~-~~~v~~~~~i~~~v~~A~~~a~s~~gPV~l~iP~ 162 (162)
T cd07038 114 DFDVFLKMFEEITCA-AARLTDPENAAEEIDRVLRTALRESRPVYIEIPR 162 (162)
T ss_pred chHHHHHHHHhheeE-EEEeCCHHHHHHHHHHHHHHHHHCCCCEEEEccC
Confidence 222 35677765444 34446777877777777753 35799998775
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many |
| >PRK06466 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=93.21 E-value=1.6 Score=51.41 Aligned_cols=117 Identities=12% Similarity=0.077 Sum_probs=80.7
Q ss_pred CcEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHH
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDIT 520 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia 520 (721)
=|++.+ -.|++++.+|.|.|.. |...+|. ++.+.+..++.-| ..+...+.||+++..........-..+|......
T Consensus 43 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~vt~GPG~~N~l~gl-~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~ 120 (574)
T PRK06466 43 VEHILV-RHEQAATHMADGYARATGKTGVVLVTSGPGATNAITGI-ATAYMDSIPMVVLSGQVPSTLIGEDAFQETDMVG 120 (574)
T ss_pred ceEEEe-CcHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHH-HHHHhcCCCEEEEecCCCccccCCCcccccchhh
Confidence 367765 8999999999999987 4434443 4788887777665 4556789999998743333111112366666666
Q ss_pred HHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 521 FMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 521 ~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
+++.+-.+ .....++.++..++..|+.. ..+|++|.+|...
T Consensus 121 l~~~itk~-s~~v~~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~Dv 165 (574)
T PRK06466 121 ISRPIVKH-SFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIPKDM 165 (574)
T ss_pred hhhcccee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence 77776554 35556788888888777753 2589999999874
|
|
| >PRK08611 pyruvate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=93.18 E-value=2 Score=50.65 Aligned_cols=116 Identities=11% Similarity=0.030 Sum_probs=78.4
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~ 521 (721)
|++. ...|++++.+|.|.|.. |...+|. ++.+.+..++.-+ ..+...+.||+++..........-..+|......+
T Consensus 45 ~~i~-~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gl-a~A~~~~~Pvl~ItG~~~~~~~~~~~~q~~d~~~l 122 (576)
T PRK08611 45 KFIQ-VRHEEVAALAAAAYAKLTGKIGVCLSIGGPGAIHLLNGL-YDAKMDHVPVLALAGQVTSDLLGTDFFQEVNLEKM 122 (576)
T ss_pred eEEE-eCcHHHHHHHHHHHHHHhCCceEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEecCCcccccCCCCccccCHHHH
Confidence 7776 48899999999999976 5443433 4788877777665 45567899999987544332111123555555567
Q ss_pred HccCCCcEEEeeCCHHHHHHHHHHHHHh---CCCCEEEEecCCC
Q 004968 522 MSCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYPRGA 562 (721)
Q Consensus 522 ~~~iPnl~V~~Psd~~E~~~~l~~a~~~---~~~P~~ir~~r~~ 562 (721)
++.+--+ .....+++++..++..|+.. ..+|++|-+|...
T Consensus 123 ~~~itk~-~~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~Dv 165 (576)
T PRK08611 123 FEDVAVY-NHQIMSAENLPEIVNQAIRTAYEKKGVAVLTIPDDL 165 (576)
T ss_pred hhcccce-eEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChhh
Confidence 7866544 34566777877777776542 3689999998764
|
|
| >PRK07710 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=93.18 E-value=1.6 Score=51.25 Aligned_cols=116 Identities=16% Similarity=0.110 Sum_probs=79.2
Q ss_pred CCcEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHH
Q 004968 442 PERYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAF 517 (721)
Q Consensus 442 p~R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~ 517 (721)
+=+++.+ .-|++++.+|.|.|.. |...+|. ++.+.+..++--| ..+-..+.||+++...... .+.+ .+|...
T Consensus 53 ~i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~~t~GPG~~N~~~gl-~~A~~~~~Pvl~ItG~~~~~~~~~~--~~q~~d 128 (571)
T PRK07710 53 GIPHILT-RHEQGAIHAAEGYARISGKPGVVIATSGPGATNVVTGL-ADAMIDSLPLVVFTGQVATSVIGSD--AFQEAD 128 (571)
T ss_pred CCcEEEe-CCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH-HHHhhcCCCEEEEeccCCccccCCC--Cccccc
Confidence 4588866 9999999999999987 5444443 4777776666655 4556779999988643332 2322 244455
Q ss_pred HHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhC----CCCEEEEecCCC
Q 004968 518 DITFMSCLPNMIVMAPSDEDELVDMVATVASID----DRPVCFRYPRGA 562 (721)
Q Consensus 518 dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~----~~P~~ir~~r~~ 562 (721)
...+++.+-.+ .+...++.++..+++.|+... .+|++|-+|...
T Consensus 129 ~~~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 176 (571)
T PRK07710 129 IMGITMPVTKH-NYQVRKASDLPRIIKEAFHIATTGRPGPVLIDIPKDM 176 (571)
T ss_pred hhhhhhcccce-EEecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcChhH
Confidence 56677766555 345567778877887777642 589999998753
|
|
| >PRK08527 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=93.11 E-value=2.2 Score=50.08 Aligned_cols=116 Identities=14% Similarity=0.058 Sum_probs=81.1
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~ 521 (721)
|++.+ -.|++++.+|.|.|.. |...+|. ++.+.+..++.-+ ..+...+.||+++..........-..+|.....++
T Consensus 43 ~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gl-a~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~ 120 (563)
T PRK08527 43 KHILT-RHEQAAVHAADGYARASGKVGVAIVTSGPGFTNAVTGL-ATAYMDSIPLVLISGQVPNSLIGTDAFQEIDAVGI 120 (563)
T ss_pred eEEEe-ccHHHHHHHHHHHHhhhCCCEEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCCCCcccchhhh
Confidence 77765 8999999999999976 5444444 5888877777665 45567899999987443331111123666655567
Q ss_pred HccCCCcEEEeeCCHHHHHHHHHHHHHhC----CCCEEEEecCCC
Q 004968 522 MSCLPNMIVMAPSDEDELVDMVATVASID----DRPVCFRYPRGA 562 (721)
Q Consensus 522 ~~~iPnl~V~~Psd~~E~~~~l~~a~~~~----~~P~~ir~~r~~ 562 (721)
++.+-.+ .....+++++..+++.|++.. .+|++|-+|...
T Consensus 121 ~~~~tk~-s~~v~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~Dv 164 (563)
T PRK08527 121 SRPCVKH-NYLVKSIEELPRILKEAFYIARSGRPGPVHIDIPKDV 164 (563)
T ss_pred hhcccce-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence 7765444 355688999999998888642 369999998764
|
|
| >PRK07979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=93.11 E-value=2.2 Score=50.24 Aligned_cols=115 Identities=13% Similarity=0.136 Sum_probs=81.1
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDI 519 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~di 519 (721)
|++.+ -.|++++.+|.|.|.. |...+|. ++.+.+..++--| ..+-..+.||+++...... .+. ..+|.....
T Consensus 44 ~~i~~-rhE~~A~~mAdgYar~tg~~gv~~~t~GPG~~n~l~gi-~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~ 119 (574)
T PRK07979 44 DHVLV-RHEQAAVHMADGLARATGEVGVVLVTSGPGATNAITGI-ATAYMDSIPLVVLSGQVATSLIGY--DAFQECDMV 119 (574)
T ss_pred eEEEe-CcHHHHHHHHHHHHHHhCCceEEEECCCccHhhhHHHH-HHHhhcCCCEEEEECCCChhccCC--CCCceecHH
Confidence 67764 8899999999999986 7666655 4888877777655 4556679999998754333 232 235555555
Q ss_pred HHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCCc
Q 004968 520 TFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGAI 563 (721)
Q Consensus 520 a~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~~ 563 (721)
.+++.+-.+ .....+++++..+++.|+.. ..+|++|.+|....
T Consensus 120 ~l~~~~tk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~Dv~ 166 (574)
T PRK07979 120 GISRPVVKH-SFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDIL 166 (574)
T ss_pred HHhhcccce-EEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhhh
Confidence 677765443 34556888988888888763 35899999988653
|
|
| >TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type | Back alignment and domain information |
|---|
Probab=93.08 E-value=2.2 Score=49.98 Aligned_cols=116 Identities=11% Similarity=0.062 Sum_probs=80.0
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEE-EecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~-~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~ 521 (721)
|++.+ -.|++++.+|.|.|.. |...+| .++.+.+..++.-+ ..+...+.||+++.............+|......+
T Consensus 41 ~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~~i-~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~ 118 (558)
T TIGR00118 41 EHILV-RHEQGAAHAADGYARASGKVGVVLVTSGPGATNLVTGI-ATAYMDSIPMVVFTGQVPTSLIGSDAFQEADILGI 118 (558)
T ss_pred eEEEe-CcHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHH-HHHHhcCCCEEEEecCCCccccCCCCCcccChhhh
Confidence 77776 8999999999999976 544444 35778877777665 45567899999987433321111223565555667
Q ss_pred HccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 522 MSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 522 ~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
++.+-.+. ....+++++..++..|+.. ..+|++|-+|...
T Consensus 119 ~~~~tk~~-~~v~~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~dv 162 (558)
T TIGR00118 119 TMPITKHS-FQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPKDV 162 (558)
T ss_pred hcCcccee-EEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEcChhh
Confidence 77665543 4446788888888888763 2579999998764
|
Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed. |
| >PRK05858 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.04 E-value=2.3 Score=49.61 Aligned_cols=118 Identities=13% Similarity=0.087 Sum_probs=81.0
Q ss_pred CCcEeeccccHHHHHHHHHHHHhCCCeeEE-E-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHH
Q 004968 442 PERYFDVGMAEQHAVTFSAGLACGGLKPFC-I-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDI 519 (721)
Q Consensus 442 p~R~~d~GIaE~~~v~~AaGlA~~G~~p~~-~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~di 519 (721)
.=|++.+ -.|++++.+|.|.|...-+|-+ . ++.+.+..++--| ..+...+.||+++.......-.+...+|.....
T Consensus 42 ~i~~i~~-rhE~~A~~~AdGyar~tg~~gv~~~t~GpG~~n~~~~i-~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~ 119 (542)
T PRK05858 42 GIRLIDV-RHEQTAAFAAEAWAKLTRVPGVAVLTAGPGVTNGMSAM-AAAQFNQSPLVVLGGRAPALRWGMGSLQEIDHV 119 (542)
T ss_pred CCCEEee-ccHHHHHHHHHHHHHhcCCCeEEEEcCCchHHHHHHHH-HHHHhcCCCEEEEeCCCCcccCCCCCCcccchh
Confidence 3478876 8999999999999998444433 3 4677777777655 466778999998864333211112346666566
Q ss_pred HHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 520 TFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 520 a~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
.+++.+-.+ .....++.++...+..|+.. ..+|++|-+|+..
T Consensus 120 ~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 165 (542)
T PRK05858 120 PFVAPVTKF-AATAQSAENAGRLVDQALQAAVTPHRGPVFVDFPMDH 165 (542)
T ss_pred hhhhhhhce-EEEeCCHHHHHHHHHHHHHHHcCCCCCeEEEEcChhh
Confidence 677766554 45557788888888777753 3579999998764
|
|
| >PRK08155 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=93.02 E-value=1.7 Score=51.05 Aligned_cols=117 Identities=15% Similarity=0.120 Sum_probs=79.6
Q ss_pred CcEeeccccHHHHHHHHHHHHhCCCee-EEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHH
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACGGLKP-FCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDIT 520 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~G~~p-~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia 520 (721)
=|++. ...|++++.+|.|.|..--+| +|. ++.+.+..++.-| ..+...+.||+++.........+-..+|.....+
T Consensus 52 i~~i~-~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~l~gl-~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~ 129 (564)
T PRK08155 52 IRHIL-ARHEQGAGFIAQGMARTTGKPAVCMACSGPGATNLVTAI-ADARLDSIPLVCITGQVPASMIGTDAFQEVDTYG 129 (564)
T ss_pred ceEEE-eccHHHHHHHHHHHHHHcCCCeEEEECCCCcHHHHHHHH-HHHHhcCCCEEEEeccCCcccccCCCccccchhh
Confidence 37888 499999999999999984455 333 5788877777666 4567789999998743332111112355554455
Q ss_pred HHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 521 FMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 521 ~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
+++.+-.+. ..-.+++++..++..|++. ..+|++|-+|...
T Consensus 130 ~~~~~tk~~-~~v~~~~~~~~~i~~A~~~a~~~~~GPV~i~iP~Dv 174 (564)
T PRK08155 130 ISIPITKHN-YLVRDIEELPQVISDAFRIAQSGRPGPVWIDIPKDV 174 (564)
T ss_pred hhhccceEE-EEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence 666655443 3345788888888877763 2589999998764
|
|
| >PRK07282 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=92.95 E-value=2.1 Score=50.30 Aligned_cols=114 Identities=15% Similarity=0.165 Sum_probs=79.8
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDI 519 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~di 519 (721)
|++.+ -.|++++.+|.|.|.. |...+|. ++.+.+..++.-| ..+-..+.||+++...... .+.+ .+|.....
T Consensus 50 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gl-a~A~~~~~Pvl~i~G~~~~~~~~~~--~~q~~d~~ 125 (566)
T PRK07282 50 RHILA-RHEQGALHEAEGYAKSTGKLGVAVVTSGPGATNAITGI-ADAMSDSVPLLVFTGQVARAGIGKD--AFQEADIV 125 (566)
T ss_pred eEEEe-cCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH-HHHhhcCCCEEEEecccccccCCCC--CccccChh
Confidence 88876 8999999999999987 6454444 5888877777665 4555679999998744333 2322 35555555
Q ss_pred HHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 520 TFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 520 a~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
.+++.+-.+. ....++.++..++..|+.. ..+|++|-+|...
T Consensus 126 ~~~~~itk~s-~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 171 (566)
T PRK07282 126 GITMPITKYN-YQIRETADIPRIITEAVHIATTGRPGPVVIDLPKDV 171 (566)
T ss_pred chhcCCCcee-EEcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCChhh
Confidence 6677655543 3446788888888877764 2589999998864
|
|
| >PRK08266 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.90 E-value=2.4 Score=49.51 Aligned_cols=117 Identities=18% Similarity=0.185 Sum_probs=79.7
Q ss_pred CcEeeccccHHHHHHHHHHHHhCCCee-EE-EecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCC-CCCcCcHH
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACGGLKP-FC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSD-GPTQCGAF 517 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~G~~p-~~-~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~d-G~TH~~~~ 517 (721)
=|++.+ ..|++++.+|.|.|...-+| +| .++.+.+..++.-+ ..+...+.||+++...... .+.+ +.+|+...
T Consensus 44 i~~v~~-~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~~~gi-~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d 121 (542)
T PRK08266 44 IRVIHT-RHEQAAGYMAFGYARSTGRPGVCSVVPGPGVLNAGAAL-LTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMPD 121 (542)
T ss_pred CeEEee-ccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHHHHHHH-HHHHhhCCCEEEEecCCChhhccCCCCcceeccc
Confidence 477776 89999999999999874344 43 35788877777665 4667789999988743222 1322 23444345
Q ss_pred HHHHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 518 DITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 518 dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
...+++.+-.+ .....+++++..+++.|++. ..+|++|-+|...
T Consensus 122 ~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~dv 169 (542)
T PRK08266 122 QLATLRSFTKW-AERIEHPSEAPALVAEAFQQMLSGRPRPVALEMPWDV 169 (542)
T ss_pred HhhHHhhhcce-EEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEeCHhH
Confidence 56778866554 35556677777777777653 3579999998754
|
|
| >cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions | Back alignment and domain information |
|---|
Probab=92.84 E-value=1.3 Score=43.62 Aligned_cols=120 Identities=16% Similarity=0.132 Sum_probs=71.4
Q ss_pred HHHHhCCCcEeeccc-cHH-HHHHHHHHHHhCC-CeeEEEe--cHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCC--
Q 004968 436 LFQEKFPERYFDVGM-AEQ-HAVTFSAGLACGG-LKPFCII--PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGS-- 508 (721)
Q Consensus 436 ~f~~~fp~R~~d~GI-aE~-~~v~~AaGlA~~G-~~p~~~t--ys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~-- 508 (721)
.+.-..|.+++..+. .=. .+++.|.|++++. -++++++ -..|+.-..+ + ..+...++|+++++-.-|..|.
T Consensus 35 ~~~~~~~~~~~~~~~~g~mG~~~~~aiGa~~a~~~~~vv~i~GDG~f~~~~~e-l-~t~~~~~lp~~~iv~NN~~~~~~~ 112 (178)
T cd02014 35 HLRMNGKQRFILSGLLATMGNGLPGAIAAKLAYPDRQVIALSGDGGFAMLMGD-L-ITAVKYNLPVIVVVFNNSDLGFIK 112 (178)
T ss_pred hcccCCCCcEEcCCCCchhhhHHHHHHHHHHhCCCCcEEEEEcchHHHhhHHH-H-HHHHHhCCCcEEEEEECCchhHHH
Confidence 344455778887543 222 2555667777654 3566665 4667655444 3 3466789998887744432221
Q ss_pred ------CCC-Cc--CcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004968 509 ------DGP-TQ--CGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 509 ------dG~-TH--~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~ 558 (721)
.++ .+ ....|+.-+..--|+..+...++.|+...++.+++ .++|++|..
T Consensus 113 ~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~~l~~a~~-~~~p~liev 170 (178)
T cd02014 113 WEQEVMGQPEFGVDLPNPDFAKIAEAMGIKGIRVEDPDELEAALDEALA-ADGPVVIDV 170 (178)
T ss_pred HHHHHhcCCceeccCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 011 11 11123332333237778888999999999999976 579998855
|
POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors. |
| >TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family | Back alignment and domain information |
|---|
Probab=92.83 E-value=1.7 Score=46.47 Aligned_cols=144 Identities=13% Similarity=0.172 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHcCCCeEEEecCCCCccChHHHHHhCCCcEeeccccH---HHHHHHHHHHHhCC-CeeEEEec--Hhh
Q 004968 404 DDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAE---QHAVTFSAGLACGG-LKPFCIIP--SAF 477 (721)
Q Consensus 404 ~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~fp~R~~d~GIaE---~~~v~~AaGlA~~G-~~p~~~ty--s~F 477 (721)
..++.++|.++.-..++.+++ .|++... +.| +|++..--- -.++.+|.|++++. -++++++. .+|
T Consensus 13 ~~~~~~a~~~l~~~p~d~iiv-sdiGc~~-------~~~-~~l~~~~~~t~mG~alPaAiGaklA~Pd~~VVai~GDG~f 83 (287)
T TIGR02177 13 LSALQRALAELNLDPEQVVVV-SGIGCSA-------KTP-HYVNVNGFHGLHGRALPVATGIKLANPHLKVIVVGGDGDL 83 (287)
T ss_pred HHHHHHHHHHhcCCCCCEEEE-ECCCccc-------ccC-CeEecCCcccccccHHHHHHHHHHHCCCCcEEEEeCchHH
Confidence 456667776654333455444 4666443 234 566543321 34666888888774 46777764 556
Q ss_pred HHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCC----CCc----------C-------cHHHHHHHccCCCcEEEeeCCH
Q 004968 478 LQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDG----PTQ----------C-------GAFDITFMSCLPNMIVMAPSDE 536 (721)
Q Consensus 478 l~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG----~TH----------~-------~~~dia~~~~iPnl~V~~Psd~ 536 (721)
+.-...-+. .++..++|+++++-.-+..|.-+ ++- . ...-+++.....-.-.....++
T Consensus 84 ~~mg~~eL~-tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~~~~~~~~g~~~~~~np~~~a~A~g~g~va~~~~~~~ 162 (287)
T TIGR02177 84 YGIGGNHFV-AAGRRNVDITVIVHDNQVYGLTKGQASPTLLKGVKTKSLPYPNIQDPVNPLLLAIALGYTFVARGFSGDV 162 (287)
T ss_pred HhccHHHHH-HHHHhCcCeEEEEEECHHHHhhhcccccCccCCcceeecccCccCCCCCHHHHHHhCCCCeEEEEecCCH
Confidence 544454443 45677999888773332222111 110 0 1111222222221222336999
Q ss_pred HHHHHHHHHHHHhCCCCEEEEe
Q 004968 537 DELVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 537 ~E~~~~l~~a~~~~~~P~~ir~ 558 (721)
+|+..+++.|++ .++|++|-.
T Consensus 163 ~eL~~ai~~Al~-~~GpslIeV 183 (287)
T TIGR02177 163 AHLKEIIKEAIN-HKGYALVDI 183 (287)
T ss_pred HHHHHHHHHHHh-CCCCEEEEE
Confidence 999999999986 688998754
|
Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes. |
| >PRK07092 benzoylformate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=92.81 E-value=2.5 Score=49.15 Aligned_cols=117 Identities=15% Similarity=0.121 Sum_probs=77.1
Q ss_pred CcEeeccccHHHHHHHHHHHHhCCCeeEEE--ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcC-CCCCCcCcHHHH
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACGGLKPFCI--IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVG-SDGPTQCGAFDI 519 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~--tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G-~dG~TH~~~~di 519 (721)
=||+. .-.|++++.+|.|.|...-+|-++ +..+.+..++.-| ..+...+.||+++........ ..++.+|.....
T Consensus 49 i~~i~-~~hE~~A~~~Adgyar~tg~~~v~~vt~gpG~~N~~~gi-a~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~d~~ 126 (530)
T PRK07092 49 FRYVL-GLQEAVVVGMADGYAQATGNAAFVNLHSAAGVGNAMGNL-FTAFKNHTPLVITAGQQARSILPFEPFLAAVQAA 126 (530)
T ss_pred CCEEE-EccHHHHHHHHHHHHHHhCCceEEEeccCchHHHHHHHH-HHHhhcCCCEEEEecCCcccccCccchhcccCHH
Confidence 37775 489999999999999974344443 3566666666655 455678999998865433311 123333333335
Q ss_pred HHHccCCCcEEEeeCCHHHHHHHHHHHHHhC----CCCEEEEecCCC
Q 004968 520 TFMSCLPNMIVMAPSDEDELVDMVATVASID----DRPVCFRYPRGA 562 (721)
Q Consensus 520 a~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~----~~P~~ir~~r~~ 562 (721)
.+++.+-.+... ..+++++..++..|+... .+|++|-+|...
T Consensus 127 ~l~~~~tk~~~~-v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~d~ 172 (530)
T PRK07092 127 ELPKPYVKWSIE-PARAEDVPAAIARAYHIAMQPPRGPVFVSIPYDD 172 (530)
T ss_pred Hhhcccccceee-cCCHHHHHHHHHHHHHHHhcCCCCcEEEEccHHH
Confidence 678877665443 477888888888877632 469999998654
|
|
| >PRK07525 sulfoacetaldehyde acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.87 Score=53.75 Aligned_cols=118 Identities=18% Similarity=0.175 Sum_probs=80.6
Q ss_pred CcEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHH
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDIT 520 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia 520 (721)
=|++.+ -.|++++.+|.|.|.. |...+|. ++.+.+..++.-+ ..+-..+.||+++..........-..+|......
T Consensus 44 i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gi-~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~ 121 (588)
T PRK07525 44 IRFIDV-AHEQNAGHMADGYTRVTGRMGMVIGQNGPGITNFVTAV-ATAYWAHTPVVLVTPQAGTKTIGQGGFQEAEQMP 121 (588)
T ss_pred CCEEEe-cCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHH-HHHhhcCCCEEEEeCCCCcccCCCCCCcccchhh
Confidence 367765 8999999999999987 6555554 4777777777655 4555779999998743332111112467666667
Q ss_pred HHccCCCcEEEeeCCHHHHHHHHHHHHH---hCCCCEEEEecCCCc
Q 004968 521 FMSCLPNMIVMAPSDEDELVDMVATVAS---IDDRPVCFRYPRGAI 563 (721)
Q Consensus 521 ~~~~iPnl~V~~Psd~~E~~~~l~~a~~---~~~~P~~ir~~r~~~ 563 (721)
+++.+-.+ .+...++.++...+..|+. ...+|++|-+|+...
T Consensus 122 l~~~~tk~-~~~i~~~~~~~~~i~rA~~~A~~~~GPV~i~iP~Dv~ 166 (588)
T PRK07525 122 MFEDMTKY-QEEVRDPSRMAEVLNRVFDKAKRESGPAQINIPRDYF 166 (588)
T ss_pred hhhhheeE-EEECCCHHHHHHHHHHHHHHHhcCCCCEEEEcChhHh
Confidence 77765443 4556778887777777764 245799999997653
|
|
| >cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation | Back alignment and domain information |
|---|
Probab=92.76 E-value=1.5 Score=43.35 Aligned_cols=117 Identities=12% Similarity=0.097 Sum_probs=68.6
Q ss_pred hCCCcEeeccc--cHHHHHHHHHHHHhC-CCeeEEEec--HhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCC-----
Q 004968 440 KFPERYFDVGM--AEQHAVTFSAGLACG-GLKPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSD----- 509 (721)
Q Consensus 440 ~fp~R~~d~GI--aE~~~v~~AaGlA~~-G~~p~~~ty--s~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~d----- 509 (721)
..|.||+..+- +=-..+..|.|++++ .-++++++. ..|+.-.-+ + ..+...++|+++++-.-+..|.-
T Consensus 36 ~~~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~f~m~~~e-L-~ta~~~~l~vi~vV~NN~~~g~~~~~~~ 113 (177)
T cd02010 36 YAPNTCLISNGLATMGVALPGAIGAKLVYPDRKVVAVSGDGGFMMNSQE-L-ETAVRLKIPLVVLIWNDNGYGLIKWKQE 113 (177)
T ss_pred CCCCCEEeCCCChhhhhHHHHHHHHHHhCCCCcEEEEEcchHHHhHHHH-H-HHHHHHCCCeEEEEEECCcchHHHHHHH
Confidence 45789887543 223345577777765 456777764 566544322 2 34566789988886333222210
Q ss_pred ---CC-CcC--cHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEec
Q 004968 510 ---GP-TQC--GAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYP 559 (721)
Q Consensus 510 ---G~-TH~--~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~~ 559 (721)
+. .+. ...|..-++.--|+.-+.-.+++|+...++++++ .++|++|-..
T Consensus 114 ~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~-~~~p~liev~ 168 (177)
T cd02010 114 KEYGRDSGVDFGNPDFVKYAESFGAKGYRIESADDLLPVLERALA-ADGVHVIDCP 168 (177)
T ss_pred HhcCCcccCcCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 00 010 1123332222226667788999999999999986 6899988654
|
ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity. |
| >COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=92.74 E-value=2.7 Score=49.19 Aligned_cols=123 Identities=15% Similarity=0.198 Sum_probs=86.9
Q ss_pred HHHHHhCCCcEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCC
Q 004968 435 QLFQEKFPERYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDG 510 (721)
Q Consensus 435 ~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG 510 (721)
+.|.+. .=|++-+ --||.++.+|.|.|.. |..-+|. |..+....++.-| .++-+-..|++++...... .|.
T Consensus 33 dal~~~-~i~~I~~-RHEq~Aa~mAdgyar~TGkpgV~~~tsGPGatN~~tgl-a~A~~d~~Pll~itGqv~~~~~g~-- 107 (550)
T COG0028 33 DALYDS-GIRHILV-RHEQGAAFAADGYARATGKPGVCLVTSGPGATNLLTGL-ADAYMDSVPLLAITGQVPTSLIGT-- 107 (550)
T ss_pred HHHHhC-CCcEEEe-ccHHHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHH-HHHHhcCCCEEEEeCCccccccCc--
Confidence 444444 4588876 8999999999999997 6655554 4778877777665 5666779999988743222 232
Q ss_pred CCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCCc
Q 004968 511 PTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGAI 563 (721)
Q Consensus 511 ~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~~ 563 (721)
-.+|......+++.+-.+ .+...+++|+-..++.|++. ..+|++|-+|+...
T Consensus 108 ~afQe~D~~~l~~p~tk~-~~~v~~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~Dv~ 163 (550)
T COG0028 108 DAFQEVDQVGLFRPITKY-NFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPKDVL 163 (550)
T ss_pred chhhhcchhhHhhhhhee-EEEeCCHHHHHHHHHHHHHHHhcCCCceEEEEcChhHh
Confidence 346666555676654433 47778889999999988874 23699999988653
|
|
| >PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=92.74 E-value=1.4 Score=46.94 Aligned_cols=148 Identities=9% Similarity=0.102 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEecCCCCccChHHHHHhCCCcEeeccccHHHHHHHHHHHHhCC-CeeEEEec--HhhHH
Q 004968 403 YDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGG-LKPFCIIP--SAFLQ 479 (721)
Q Consensus 403 ~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~G-~~p~~~ty--s~Fl~ 479 (721)
...++.++|.++....++.+++ .|.+.++.+..+ +.-..+.... ..++.+|.|++++. -++++++. ++++.
T Consensus 18 il~al~~al~~l~~~~~~~ivv-sdiGc~~~~~~~---~~~~~~~~~~--G~alp~A~GaklA~Pd~~VV~i~GDG~~f~ 91 (279)
T PRK11866 18 ILEALRKALAELGIPPENVVVV-SGIGCSSNLPEF---LNTYGIHGIH--GRVLPIATGVKWANPKLTVIGYGGDGDGYG 91 (279)
T ss_pred HHHHHHHHHHHhcCCCCCEEEE-ECCchhhhhhhh---ccCCCccccc--ccHHHHHHHHHHHCCCCcEEEEECChHHHH
Confidence 3456666665543333454444 466544322222 1112233322 55677888887773 46677764 44455
Q ss_pred HHHHHHHHHhhcCCcceEEEEcCCCCcCCCC----CC----------cC-------cHHHHHHHccCCCcEEEeeCCHHH
Q 004968 480 RAYDQVVNDVDQQRLPVRFVITSAGLVGSDG----PT----------QC-------GAFDITFMSCLPNMIVMAPSDEDE 538 (721)
Q Consensus 480 ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG----~T----------H~-------~~~dia~~~~iPnl~V~~Psd~~E 538 (721)
-++..+.+ ++..++|+++++-.-+..|.-| ++ -. ....++.....+.+....+.++.|
T Consensus 92 ig~~eL~t-A~rrn~~i~vIV~nN~~ygmtggQ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~ 170 (279)
T PRK11866 92 IGLGHLPH-AARRNVDITYIVSNNQVYGLTTGQASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKH 170 (279)
T ss_pred ccHHHHHH-HHHHCcCcEEEEEEChhhhhhcccccCCCCCCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHH
Confidence 66666644 5778899888774333322211 11 00 122333333344455566699999
Q ss_pred HHHHHHHHHHhCCCCEEEEe
Q 004968 539 LVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 539 ~~~~l~~a~~~~~~P~~ir~ 558 (721)
+...++.|++ .++|++|-.
T Consensus 171 l~~~l~~Al~-~~Gps~I~v 189 (279)
T PRK11866 171 LKEIIKEAIK-HKGFSFIDV 189 (279)
T ss_pred HHHHHHHHHh-CCCCEEEEE
Confidence 9999999987 689998854
|
|
| >cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria | Back alignment and domain information |
|---|
Probab=92.64 E-value=2 Score=44.68 Aligned_cols=90 Identities=10% Similarity=0.150 Sum_probs=55.0
Q ss_pred CeeEEEec--HhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCc-----------------------HHHHH-
Q 004968 467 LKPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCG-----------------------AFDIT- 520 (721)
Q Consensus 467 ~~p~~~ty--s~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~-----------------------~~dia- 520 (721)
-+|++++- ..|++..+..+. .++..++|+++++-.-+..|.-|.+++. ..|+.
T Consensus 80 ~r~VV~i~GDG~~~~m~~~eL~-ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~ 158 (235)
T cd03376 80 DITVVAFAGDGGTADIGFQALS-GAAERGHDILYICYDNEAYMNTGIQRSGSTPYGAWTTTTPVGKVSFGKKQPKKDLPL 158 (235)
T ss_pred CCeEEEEEcCchHHhhHHHHHH-HHHHcCCCeEEEEECCcccccCCCCCCCCCCCCCEeecCCCCccccccccccCCHHH
Confidence 57888874 555556666664 5678899998888444433321111111 01222
Q ss_pred HHccC--CCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004968 521 FMSCL--PNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 521 ~~~~i--Pnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~ 558 (721)
+.+.+ +++..+...+++|+...++.+++ .++|++|-.
T Consensus 159 iA~a~G~~~~~~~~v~~~~el~~al~~a~~-~~gP~lIev 197 (235)
T cd03376 159 IMAAHNIPYVATASVAYPEDLYKKVKKALS-IEGPAYIHI 197 (235)
T ss_pred HHHHcCCcEEEEEcCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 22222 23334568999999999999987 688988744
|
PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity. |
| >PRK07064 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.57 E-value=2.9 Score=48.75 Aligned_cols=116 Identities=12% Similarity=0.132 Sum_probs=79.4
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEE-EecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCC-CCCcCcHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSD-GPTQCGAFD 518 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~-~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~d-G~TH~~~~d 518 (721)
|++.+ ..|++++.+|.|.|.. |...+| .++.+.+..++..| ..+...+.||+++...... .+.+ +..|+....
T Consensus 43 ~~i~~-~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~~~~i-~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~ 120 (544)
T PRK07064 43 RFVPA-RGEAGAVNMADAHARVSGGLGVALTSTGTGAGNAAGAL-VEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQ 120 (544)
T ss_pred cEEee-ccHHHHHHHHHHHHHhcCCCeEEEeCCCCcHHHHHHHH-HHHHhcCCCEEEEeCCCCcccccCCCcccccccCH
Confidence 77765 8999999999999987 544444 35788777777665 4556789999988743221 2322 234554455
Q ss_pred HHHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 519 ITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 519 ia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
..+++.+-.+ .+...++.++..++..|+.. ..+|++|-+|...
T Consensus 121 ~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 167 (544)
T PRK07064 121 LTMLRAVSKA-AFRVRSAETALATIREAVRVALTAPTGPVSVEIPIDI 167 (544)
T ss_pred HHHhhhhcce-EEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEeCHhH
Confidence 6777766554 34456778877777777653 3689999998754
|
|
| >cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.92 Score=45.09 Aligned_cols=115 Identities=19% Similarity=0.250 Sum_probs=68.1
Q ss_pred hCCCcEeeccc-c-HHHHHHHHHHHHhCC-CeeEEEec--HhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCC------
Q 004968 440 KFPERYFDVGM-A-EQHAVTFSAGLACGG-LKPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGS------ 508 (721)
Q Consensus 440 ~fp~R~~d~GI-a-E~~~v~~AaGlA~~G-~~p~~~ty--s~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~------ 508 (721)
..|.+|+..+- . =-..+..|.|++++. -++++++. ..|+.-.-+ + ..++..++|+++++-.-+..+.
T Consensus 38 ~~~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~f~~~~~e-L-~ta~~~~lpi~ivV~nN~~~~~~~~~~~ 115 (186)
T cd02015 38 KKPRSWLTSGGLGTMGFGLPAAIGAKVARPDKTVICIDGDGSFQMNIQE-L-ATAAQYNLPVKIVILNNGSLGMVRQWQE 115 (186)
T ss_pred CCCCeEEeCCCccchhchHHHHHHHHHhCCCCeEEEEEcccHHhccHHH-H-HHHHHhCCCeEEEEEECCccHHHHHHHH
Confidence 45788887543 2 223566777877764 35666654 566644333 3 3456778998877743332110
Q ss_pred ------CCCCc-CcHHHHH-HHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004968 509 ------DGPTQ-CGAFDIT-FMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 509 ------dG~TH-~~~~dia-~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~ 558 (721)
...++ ....|.+ +.+.+ |+.-+.-.+..|+...++.+++ .++|++|-.
T Consensus 116 ~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~-~~~p~liev 171 (186)
T cd02015 116 LFYEGRYSHTTLDSNPDFVKLAEAY-GIKGLRVEKPEELEAALKEALA-SDGPVLLDV 171 (186)
T ss_pred HHcCCceeeccCCCCCCHHHHHHHC-CCceEEeCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 00111 1112322 33333 5666777889999999999976 688998855
|
AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD. |
| >PRK08199 thiamine pyrophosphate protein; Validated | Back alignment and domain information |
|---|
Probab=92.37 E-value=2.5 Score=49.58 Aligned_cols=115 Identities=11% Similarity=0.049 Sum_probs=79.4
Q ss_pred CcEeeccccHHHHHHHHHHHHhCCCeeEE-E-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHH
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACGGLKPFC-I-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFD 518 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~G~~p~~-~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d 518 (721)
=|++.+ -.|++++.+|.|.|...-+|-+ . ++.+.+..++--| ..+-..+.||+++...... .+. ..+|....
T Consensus 47 i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~~~gi-~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~ 122 (557)
T PRK08199 47 IRVIVC-RQEGGAAMMAEAYGKLTGRPGICFVTRGPGATNASIGV-HTAFQDSTPMILFVGQVARDFRER--EAFQEIDY 122 (557)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHH-HHHhhcCCCEEEEecCCccccCCC--CcccccCH
Confidence 367765 8899999999999998544433 3 4788887777665 4556789999988743332 232 23565666
Q ss_pred HHHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 519 ITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 519 ia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
..+++.+-.+. ....++.++..++..|++. ..+|++|.+|...
T Consensus 123 ~~l~~~~tk~~-~~v~~~~~~~~~~~~A~~~A~~~~~GPV~l~iP~dl 169 (557)
T PRK08199 123 RRMFGPMAKWV-AEIDDAARIPELVSRAFHVATSGRPGPVVLALPEDV 169 (557)
T ss_pred HHhhhhhhcee-eecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence 67777665543 3446788888888777753 3579999999764
|
|
| >PRK06965 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=92.33 E-value=3.8 Score=48.36 Aligned_cols=115 Identities=17% Similarity=0.161 Sum_probs=79.1
Q ss_pred CcEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHH
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFD 518 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d 518 (721)
=|++.+ -.|++++.+|-|.|.. |...+|. ++.+.+..++.-+ ..+...+.||+++...... .+.+ .+|....
T Consensus 60 i~~i~~-rhE~~A~~~AdgYar~tg~~gv~~~t~GpG~~N~l~gl-~~A~~~~~Pvl~i~G~~~~~~~~~~--~~q~~d~ 135 (587)
T PRK06965 60 IQHVLV-RHEQAAVHAADGYARATGKVGVALVTSGPGVTNAVTGI-ATAYMDSIPMVVISGQVPTAAIGQD--AFQECDT 135 (587)
T ss_pred CeEEEe-CCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCC--CcccccH
Confidence 378876 8999999999999987 5444444 4788887777665 4666789999998744333 1322 3555545
Q ss_pred HHHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 519 ITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 519 ia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
..+++.+-.+ .....+++++..++..|++. ..+|++|-+|...
T Consensus 136 ~~l~~~itk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 182 (587)
T PRK06965 136 VGITRPIVKH-NFLVKDVRDLAETVKKAFYIARTGRPGPVVVDIPKDV 182 (587)
T ss_pred HHHhcCCcce-eEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChhh
Confidence 5667766544 34456777777777777653 2579999999874
|
|
| >PRK07789 acetolactate synthase 1 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=92.30 E-value=3.3 Score=49.20 Aligned_cols=117 Identities=19% Similarity=0.150 Sum_probs=80.7
Q ss_pred CcEeeccccHHHHHHHHHHHHhC-CCeeEE-EecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHH
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDIT 520 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~-G~~p~~-~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia 520 (721)
=+++.+ -.|++++.+|.|.|.. |...+| .++.+.+..++--| ..+...+.||+++.............+|......
T Consensus 70 i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gl-~~A~~~~~PllvI~G~~~~~~~~~~~~q~~d~~~ 147 (612)
T PRK07789 70 VRHVLV-RHEQGAGHAAEGYAQATGRVGVCMATSGPGATNLVTPI-ADANMDSVPVVAITGQVGRGLIGTDAFQEADIVG 147 (612)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCCcCcccchhh
Confidence 377775 8999999999999987 655444 34778777777655 4666789999998744333111112355555556
Q ss_pred HHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 521 FMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 521 ~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
+++.+-.+ .+...++.++..++..|+.. ..+|++|-+|...
T Consensus 148 l~~~~tk~-s~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv 192 (612)
T PRK07789 148 ITMPITKH-NFLVTDADDIPRVIAEAFHIASTGRPGPVLVDIPKDA 192 (612)
T ss_pred hhhcceeE-EEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEEccch
Confidence 77765443 34557888988888888763 2579999998764
|
|
| >PRK07524 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.28 E-value=3.4 Score=48.11 Aligned_cols=116 Identities=16% Similarity=0.211 Sum_probs=80.4
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEE-EecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCC-CCCcCcHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSD-GPTQCGAFD 518 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~-~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~d-G~TH~~~~d 518 (721)
|++.+ -.|++++.+|-|.|.. |...+| .++.+.+..++--| ..+...+.||+++...... .+.+ +..|+....
T Consensus 41 ~~i~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~~~gi-~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~ 118 (535)
T PRK07524 41 RHVTP-RHEQGAGFMADGYARVSGKPGVCFIITGPGMTNIATAM-GQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQ 118 (535)
T ss_pred cEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH-HHHHhcCCCEEEEeCCCChhhcCCCCccccccccH
Confidence 77775 8999999999999987 544344 35788877777665 4666789999988743332 2322 344553445
Q ss_pred HHHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 519 ITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 519 ia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
..+++.+--+ .+...+++++...+..|+.. ..+|++|-+|+..
T Consensus 119 ~~l~~~~tk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 165 (535)
T PRK07524 119 RAMVAGVAAF-SHTLMSAEDLPEVLARAFAVFDSARPRPVHIEIPLDV 165 (535)
T ss_pred HHHhhhhcee-EEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEEeCHhH
Confidence 5677765433 46667888888888877753 3579999999764
|
|
| >PRK09107 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=92.26 E-value=3.1 Score=49.23 Aligned_cols=115 Identities=15% Similarity=0.129 Sum_probs=80.1
Q ss_pred CcEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHH
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFD 518 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d 518 (721)
=|++.+ --|++++.+|-|.|.. |...+|. ++.+.+..++--| ..+-..+.||+++...... .|. .++|....
T Consensus 50 i~~I~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gi-a~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~ 125 (595)
T PRK09107 50 IQHILV-RHEQGAGHAAEGYARSTGKPGVVLVTSGPGATNAVTPL-QDALMDSIPLVCITGQVPTHLIGS--DAFQECDT 125 (595)
T ss_pred CeEEEE-CChHHHHHHHHHHHHHhCCCEEEEECCCccHhHHHHHH-HHHhhcCCCEEEEEcCCChhhcCC--CCCcccch
Confidence 378886 9999999999999965 6555554 4788887777665 4556779999988743332 232 24665555
Q ss_pred HHHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 519 ITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 519 ia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
..+++.+-.+ .+...++.++..++..|++. ..+|++|-+|+..
T Consensus 126 ~~l~~~vtk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv 172 (595)
T PRK09107 126 VGITRPCTKH-NWLVKDVNDLARVIHEAFHVATSGRPGPVVVDIPKDV 172 (595)
T ss_pred hhhhhhheEE-EEEeCCHHHHHHHHHHHHHHhcCCCCceEEEecCCCh
Confidence 5666654333 34457788888888887763 2589999999765
|
|
| >PRK06725 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=92.21 E-value=3.7 Score=48.34 Aligned_cols=115 Identities=15% Similarity=0.124 Sum_probs=80.1
Q ss_pred CcEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHH
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFD 518 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d 518 (721)
=|++.+ -.|++++.+|.|.|.. |...+|. ++.+.+..++.-| ..+-..+.||+++...... .+. ..+|....
T Consensus 53 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~~~gl-a~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~d~ 128 (570)
T PRK06725 53 LKHILT-RHEQAAIHAAEGYARASGKVGVVFATSGPGATNLVTGL-ADAYMDSIPLVVITGQVATPLIGK--DGFQEADV 128 (570)
T ss_pred CcEEEe-cCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH-HHHhhcCcCEEEEecCCCcccccC--CCCcccch
Confidence 477775 8999999999999986 6444443 5888887777665 4556679999988743332 232 23555555
Q ss_pred HHHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 519 ITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 519 ia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
..+++.+-.+ .+...+++++..+++.|+.. ..+|++|.+|...
T Consensus 129 ~~l~~~itk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv 175 (570)
T PRK06725 129 VGITVPVTKH-NYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPKDV 175 (570)
T ss_pred hhhhhcccee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEccccch
Confidence 5667765544 34457889999888888763 3589999998764
|
|
| >PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=92.20 E-value=0.85 Score=49.00 Aligned_cols=103 Identities=5% Similarity=0.029 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhC------CCeeEEEec--HhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCC-------------
Q 004968 454 HAVTFSAGLACG------GLKPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPT------------- 512 (721)
Q Consensus 454 ~~v~~AaGlA~~------G~~p~~~ty--s~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~T------------- 512 (721)
+..++|.|++.+ +-..++++. +++..-+++.+ +.++..++||++++-.-...+.-|.+
T Consensus 73 ~~~~~A~G~a~A~~~~~~~~~~Vva~~GDG~~~~~g~~~l-~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~t 151 (300)
T PRK11864 73 ATAAVASGIEEALKARGEKGVIVVGWAGDGGTADIGFQAL-SGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTT 151 (300)
T ss_pred ChHHHHHHHHHHHHhhCCCCcEEEEEEccCccccccHHHH-HHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCcccc
Confidence 344455555554 335566554 55555556544 67788999999988322221111111
Q ss_pred --------cCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004968 513 --------QCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 513 --------H~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~ 558 (721)
.-....+.....+|-+....|.++.++...++.|++ .++|.+|..
T Consensus 152 sp~G~~~~kkdi~~i~~a~g~~yVA~~~~~~~~~~~~~i~~A~~-~~Gps~I~~ 204 (300)
T PRK11864 152 TPGGKREHKKPVPDIMAAHKVPYVATASIAYPEDFIRKLKKAKE-IRGFKFIHL 204 (300)
T ss_pred CCCCCcCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 112344544456677788999999999999999986 689998854
|
|
| >PRK08322 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=92.00 E-value=3.5 Score=48.11 Aligned_cols=115 Identities=12% Similarity=0.066 Sum_probs=80.1
Q ss_pred CcEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHH
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFD 518 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d 518 (721)
=|++.+ ..|++++.+|.|.|.. |...+|. ++.+.+..++.-+ ..+...+.||+++...... .+. ..||....
T Consensus 39 i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~N~~~~i-~~A~~~~~Pll~i~g~~~~~~~~~--~~~q~~d~ 114 (547)
T PRK08322 39 IKLILT-RHEQGAAFMAATYGRLTGKAGVCLSTLGPGATNLVTGV-AYAQLGGMPMVAITGQKPIKRSKQ--GSFQIVDV 114 (547)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHhhCCCEEEEECCCccHhHHHHHH-HHHhhcCCCEEEEeccccccccCC--CccccccH
Confidence 377775 8999999999999998 5443443 4777777777665 4667789999988743322 232 23555555
Q ss_pred HHHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 519 ITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 519 ia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
..+++.+-.+ .+...+++++..++..|+.. ..+|++|-+|...
T Consensus 115 ~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 161 (547)
T PRK08322 115 VAMMAPLTKW-TRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPEDI 161 (547)
T ss_pred HHHhhhheeE-EEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhh
Confidence 5677765543 46667888888888877763 3579999998764
|
|
| >cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD) | Back alignment and domain information |
|---|
Probab=91.87 E-value=1.5 Score=43.15 Aligned_cols=115 Identities=18% Similarity=0.226 Sum_probs=66.1
Q ss_pred hCCCcEe-eccccHH-HHHHHHHHHHhCCCeeEEEec--HhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCC--CCc
Q 004968 440 KFPERYF-DVGMAEQ-HAVTFSAGLACGGLKPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDG--PTQ 513 (721)
Q Consensus 440 ~fp~R~~-d~GIaE~-~~v~~AaGlA~~G~~p~~~ty--s~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG--~TH 513 (721)
..|.|++ +.|..-. ..++.|.|++++--+|++++. ..|+.-.-+ + .-+...++|+++++-.-+..|... ..+
T Consensus 39 ~~~~~~~~~~g~g~mG~~l~~aiGa~la~~~~Vv~i~GDGsf~m~~~e-L-~ta~~~~l~v~ivVlNN~~~g~~~~~~~~ 116 (175)
T cd02009 39 DKTVRVFANRGASGIDGTLSTALGIALATDKPTVLLTGDLSFLHDLNG-L-LLGKQEPLNLTIVVINNNGGGIFSLLPQA 116 (175)
T ss_pred CCCceEEecCCccchhhHHHHHHHHHhcCCCCEEEEEehHHHHHhHHH-H-HhccccCCCeEEEEEECCCCchheeccCC
Confidence 4577888 5554322 355677777766457777764 566544322 2 234566899877774333222100 000
Q ss_pred C--c----------HHHH-HHHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004968 514 C--G----------AFDI-TFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 514 ~--~----------~~di-a~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~ 558 (721)
+ . ..|. ++.+.+ |+.-+...+++|+...++.+++ .++|++|-.
T Consensus 117 ~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~-~~~p~lIev 172 (175)
T cd02009 117 SFEDEFERLFGTPQGLDFEHLAKAY-GLEYRRVSSLDELEQALESALA-QDGPHVIEV 172 (175)
T ss_pred cccchhhhhhcCCCCCCHHHHHHHc-CCCeeeCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 0 0 0111 222222 5566777899999999999986 688988743
|
SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity. |
| >PRK06457 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.76 E-value=1 Score=52.74 Aligned_cols=117 Identities=9% Similarity=-0.057 Sum_probs=78.8
Q ss_pred CcEeeccccHHHHHHHHHHHHhCCCeeEEE--ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHH
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACGGLKPFCI--IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDIT 520 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~--tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia 520 (721)
=|++.+ -.|++++.+|.|.|..--+|.++ ++.+.+..++.-+ ..+-..+.||+++..........-.++|......
T Consensus 40 i~~v~~-~hE~~A~~mAdgyar~tgkpgv~~~t~GPG~~N~l~~l-~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~ 117 (549)
T PRK06457 40 VKYVQV-RHEEGAALAASVEAKITGKPSACMGTSGPGSIHLLNGL-YDAKMDHAPVIALTGQVESDMIGHDYFQEVNLTK 117 (549)
T ss_pred CeEEEe-CcHHHHHHHHHHHHHHhCCCeEEEeCCCCchhhhHHHH-HHHHhcCCCEEEEecCCCccccCCCcccccchhh
Confidence 466654 89999999999999985444443 4777777777665 4556789999988643322111112356655667
Q ss_pred HHccCCCcEEEeeCCHHHHHHHHHHHHHh---CCCCEEEEecCCC
Q 004968 521 FMSCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYPRGA 562 (721)
Q Consensus 521 ~~~~iPnl~V~~Psd~~E~~~~l~~a~~~---~~~P~~ir~~r~~ 562 (721)
+++.+-.+ .....+++++..++..|++. ..+|++|.+|...
T Consensus 118 l~~~vtk~-~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~Dv 161 (549)
T PRK06457 118 LFDDVAVF-NQILINPENAEYIIRRAIREAISKRGVAHINLPVDI 161 (549)
T ss_pred hhccceeE-EEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeCHhH
Confidence 77765544 35566777777777777653 3689999998764
|
|
| >TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit | Back alignment and domain information |
|---|
Probab=91.71 E-value=2.9 Score=41.61 Aligned_cols=144 Identities=19% Similarity=0.262 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHcCCCeEEEecCCCCccChHHHH-HhCCCcEeeccccHHHHHHHHHHHHhCCCeeEEEec--HhhHHHH
Q 004968 405 DCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQ-EKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIP--SAFLQRA 481 (721)
Q Consensus 405 ~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~-~~fp~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~ty--s~Fl~ra 481 (721)
+++.++|.+.+. ..+++. |.+... ...+. ...|.+++..|-- ...+..|.|++++--+|++++. ..|+.-.
T Consensus 2 ~~~~~~l~~~l~--d~iiv~--d~G~~~-~~~~~~~~~~~~~~~~gsm-G~~lpaAiGa~la~~~~Vv~i~GDG~f~m~~ 75 (181)
T TIGR03846 2 IDAIRAIASYLE--DELVVS--NIGVPS-KELYAIRDRPLNFYMLGSM-GLASSIGLGLALATDRTVIVIDGDGSLLMNL 75 (181)
T ss_pred HHHHHHHHHhCC--CCEEEe--cCCHhH-HHHHhhhcCCCCeeecccc-ccHHHHHHHHHHcCCCcEEEEEcchHHHhhh
Confidence 455566666662 333333 443222 12222 1357888864421 2234577777776456777764 5565332
Q ss_pred HHHHHHHhhcCC-cceEEEEcCCCCcCCCCC--CcC-cHHHH-HHHccCCCcEEEe-eCCHHHHHHHHHHHHHhCCCCEE
Q 004968 482 YDQVVNDVDQQR-LPVRFVITSAGLVGSDGP--TQC-GAFDI-TFMSCLPNMIVMA-PSDEDELVDMVATVASIDDRPVC 555 (721)
Q Consensus 482 ~dqi~~~~a~~~-lpVv~v~~~~G~~G~dG~--TH~-~~~di-a~~~~iPnl~V~~-Psd~~E~~~~l~~a~~~~~~P~~ 555 (721)
..+ ..++..+ +|+++++...+..|.-+. +.. ...|. .+.+.. |+.-.. ..+++|+...++ +++ .++|++
T Consensus 76 -~el-~ta~~~~~~pv~~vV~NN~~yg~~~~q~~~~~~~~d~~~lA~a~-G~~~~~~v~~~~~l~~al~-a~~-~~~p~l 150 (181)
T TIGR03846 76 -GVL-PTIAAESPKNLILVILDNGAYGSTGNQPTPASRRTDLELVAKAA-GIRNVEKVADEEELRDALK-ALA-MKGPTF 150 (181)
T ss_pred -hHH-HHHHHhCCCCeEEEEEeCCccccccCcCCCCCCCCCHHHHHHHC-CCCeEEEeCCHHHHHHHHH-HHc-CCCCEE
Confidence 222 3445566 588777743333232221 111 11122 233332 454444 789999999997 765 678998
Q ss_pred EEec
Q 004968 556 FRYP 559 (721)
Q Consensus 556 ir~~ 559 (721)
|...
T Consensus 151 i~v~ 154 (181)
T TIGR03846 151 IHVK 154 (181)
T ss_pred EEEE
Confidence 8653
|
Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363). |
| >PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=91.63 E-value=4.3 Score=43.69 Aligned_cols=104 Identities=9% Similarity=0.136 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHhC----CC-eeEEEe--cHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCC-------------
Q 004968 453 QHAVTFSAGLACG----GL-KPFCII--PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPT------------- 512 (721)
Q Consensus 453 ~~~v~~AaGlA~~----G~-~p~~~t--ys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~T------------- 512 (721)
..++++|.|++.+ +. ++++++ -+.|..-++..+. .++..+.++++++-.-+..+.-|.+
T Consensus 72 g~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG~~~L~-~a~~r~~ni~~ivlDNe~Y~nTGgQ~S~~Tp~Ga~t~t 150 (299)
T PRK11865 72 ENAAAVASGIERAVKALGKKVNVVAIGGDGGTADIGFQSLS-GAMERGHNILYLMYDNEAYMNTGIQRSGSTPFGASTTT 150 (299)
T ss_pred cchHHHHHHHHHHHHHhcCCCeEEEEeCCchHhhccHHHHH-HHHHcCCCeEEEEECCccccCCCCCCCCCCCCCccccc
Confidence 3566677777665 42 345555 4667777776664 4567788888777333332211111
Q ss_pred -------------cCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004968 513 -------------QCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 513 -------------H~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~ 558 (721)
.-....++.....|-+....|.++.|+...++.|++ .++|.+|..
T Consensus 151 sp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~-~~Gps~I~v 208 (299)
T PRK11865 151 SPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKE-VEGPAYIQV 208 (299)
T ss_pred CCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 122344544456677778999999999999999986 689998854
|
|
| >PRK08273 thiamine pyrophosphate protein; Provisional | Back alignment and domain information |
|---|
Probab=91.52 E-value=3.6 Score=48.68 Aligned_cols=115 Identities=12% Similarity=0.139 Sum_probs=77.3
Q ss_pred CcEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHH
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFD 518 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d 518 (721)
=||+.+ -.|++++.+|-|.|.. |...+|. ++.+.+..++.-| ..+-..+.||+++...... .+.+ .+|....
T Consensus 43 i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gi-~~A~~d~vPvl~I~G~~~~~~~~~~--~~q~~d~ 118 (597)
T PRK08273 43 PEFVQA-RHEEMAAFMAVAHAKFTGEVGVCLATSGPGAIHLLNGL-YDAKLDHVPVVAIVGQQARAALGGH--YQQEVDL 118 (597)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHH-HHHHhcCCCEEEEecCCchhhcCCC--CCCccCH
Confidence 377775 8999999999999987 5444443 5788887777665 4666789999988743332 2332 3555444
Q ss_pred HHHHccCC-CcEEEeeCCHHHHHHHHHHHHHh---CCCCEEEEecCCC
Q 004968 519 ITFMSCLP-NMIVMAPSDEDELVDMVATVASI---DDRPVCFRYPRGA 562 (721)
Q Consensus 519 ia~~~~iP-nl~V~~Psd~~E~~~~l~~a~~~---~~~P~~ir~~r~~ 562 (721)
..+++.+- -+ .....++.++...+..|+.. ..+|++|.+|...
T Consensus 119 ~~l~~~vt~k~-~~~v~~~~~~~~~l~~A~~~A~~~~gPV~i~iP~Dv 165 (597)
T PRK08273 119 QSLFKDVAGAF-VQMVTVPEQLRHLVDRAVRTALAERTVTAVILPNDV 165 (597)
T ss_pred HHHHHHHHHHH-eeEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeCcch
Confidence 56666543 22 34556677777766666542 4589999999765
|
|
| >PLN02573 pyruvate decarboxylase | Back alignment and domain information |
|---|
Probab=91.45 E-value=4 Score=48.10 Aligned_cols=115 Identities=12% Similarity=0.172 Sum_probs=73.6
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCc----
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCG---- 515 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~---- 515 (721)
|++.+ -.|++++.+|-|.|.. | .++|. ++.+.+..+...+ ..+-..+.||+++...... .+.++..||.
T Consensus 56 ~~i~~-rhE~~A~~mAdgyaR~tg-~gv~~~t~GpG~~n~~~gl-a~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~ 132 (578)
T PLN02573 56 NLIGC-CNELNAGYAADGYARARG-VGACVVTFTVGGLSVLNAI-AGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLP 132 (578)
T ss_pred eEEEe-CCHHHHHHHHHHHHHHhC-CCeEEEecCccHHHHHHHH-HHHHHhCCCEEEEECCCChhhhhcCceeeeecCCC
Confidence 56654 8899999999999986 8 66665 4777776666655 3445679999998743332 2444445643
Q ss_pred --HHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHh---CCCCEEEEecCCC
Q 004968 516 --AFDITFMSCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYPRGA 562 (721)
Q Consensus 516 --~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~---~~~P~~ir~~r~~ 562 (721)
..+..+++.+-.+ .....+++++..++..|+.. ..+|++|-+|+..
T Consensus 133 ~~~~~~~~~~~itk~-s~~v~~~~~~~~~l~~A~~~A~~~~gPV~l~iP~Dv 183 (578)
T PLN02573 133 DFSQELRCFQTVTCY-QAVINNLEDAHELIDTAISTALKESKPVYISVSCNL 183 (578)
T ss_pred ChHHHHHHhhceEEE-EEEeCCHHHHHHHHHHHHHHHHhcCCCEEEEeehhh
Confidence 2234556654333 23345566655555555442 4589999999875
|
|
| >PRK08617 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=91.41 E-value=1.3 Score=51.71 Aligned_cols=115 Identities=11% Similarity=0.050 Sum_probs=81.1
Q ss_pred CcEeeccccHHHHHHHHHHHHhCCCe-eEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHH
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACGGLK-PFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFD 518 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~G~~-p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d 518 (721)
=|++.+ ..|++++.+|.|.|...-+ .+|. ++.+.+..++.-+ ..+...+.||+++...... .+. ..||....
T Consensus 43 i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~vt~GpG~~N~l~gl-~~A~~~~~PvlvisG~~~~~~~~~--~~~q~~d~ 118 (552)
T PRK08617 43 PELIVT-RHEQNAAFMAAAIGRLTGKPGVVLVTSGPGVSNLATGL-VTATAEGDPVVAIGGQVKRADRLK--RTHQSMDN 118 (552)
T ss_pred CCEEEe-ccHHHHHHHHHhHhhhcCCCEEEEECCCCcHhHhHHHH-HHHhhcCCCEEEEecCCcccccCC--CCccccch
Confidence 477776 8999999999999998444 4433 5778777777665 4556789999998743332 232 24777766
Q ss_pred HHHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 519 ITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 519 ia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
..+++.+-.+ .+...++.++..++..|++. ..+|++|-+|...
T Consensus 119 ~~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 165 (552)
T PRK08617 119 VALFRPITKY-SAEVQDPDNLSEVLANAFRAAESGRPGAAFVSLPQDV 165 (552)
T ss_pred hhhhhhhcce-EEEeCCHHHHHHHHHHHHHHHccCCCCcEEEeChhhh
Confidence 7778876554 45557788888888877763 2469999998764
|
|
| >PRK11269 glyoxylate carboligase; Provisional | Back alignment and domain information |
|---|
Probab=91.39 E-value=4.2 Score=48.07 Aligned_cols=116 Identities=8% Similarity=0.004 Sum_probs=79.0
Q ss_pred cEeeccccHHHHHHHHHHHHhCC-Cee-EE-EecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACGG-LKP-FC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDIT 520 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~G-~~p-~~-~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia 520 (721)
|++.+ .-|++++.+|.|.|... -+| +| .|+.+.+..++--+ ..+...+.||+++..........-..+|......
T Consensus 44 ~~v~~-rhE~~A~~mAdGYar~t~g~~gv~~~t~GPG~~N~l~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~ 121 (591)
T PRK11269 44 RHILA-RHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGL-YSASADSIPILCITGQAPRARLHKEDFQAVDIES 121 (591)
T ss_pred cEEee-CCHHHHHHHHHHHHHHcCCCcEEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCCcccccChhh
Confidence 78887 89999999999999864 444 33 35787776666655 4556779999988743332111112366655667
Q ss_pred HHccCCCcEEEeeCCHHHHHHHHHHHHHhC----CCCEEEEecCCC
Q 004968 521 FMSCLPNMIVMAPSDEDELVDMVATVASID----DRPVCFRYPRGA 562 (721)
Q Consensus 521 ~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~----~~P~~ir~~r~~ 562 (721)
+++.+--+ .....++.++..+++.|++.. .+|++|-+|...
T Consensus 122 l~~~itk~-s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 166 (591)
T PRK11269 122 IAKPVTKW-AVTVREPALVPRVFQQAFHLMRSGRPGPVLIDLPFDV 166 (591)
T ss_pred HhhcceeE-EEEcCCHHHHHHHHHHHHHHHhhCCCCeEEEEeChhh
Confidence 77765443 345577888888888887632 479999998764
|
|
| >PRK06163 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.32 E-value=6.7 Score=39.74 Aligned_cols=116 Identities=12% Similarity=0.179 Sum_probs=64.7
Q ss_pred hCCCcEeeccccHHHHHHHHHHHHhCC-CeeEEEec--HhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCC-CC--c
Q 004968 440 KFPERYFDVGMAEQHAVTFSAGLACGG-LKPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDG-PT--Q 513 (721)
Q Consensus 440 ~fp~R~~d~GIaE~~~v~~AaGlA~~G-~~p~~~ty--s~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG-~T--H 513 (721)
..|.+|+-.| +=-.++.+|.|++++. -++++++. ..|+.-.-+ +...+.+.++|+++++-.-+..|..+ .. +
T Consensus 48 ~~~~~~~~~G-sMG~glpaAiGaalA~p~r~Vv~i~GDG~f~m~~~e-L~Ta~~~~~lpi~ivV~NN~~yg~~~~~~~~~ 125 (202)
T PRK06163 48 QRPQNFYMLG-SMGLAFPIALGVALAQPKRRVIALEGDGSLLMQLGA-LGTIAALAPKNLTIIVMDNGVYQITGGQPTLT 125 (202)
T ss_pred cCCCCeEeec-ccccHHHHHHHHHHhCCCCeEEEEEcchHHHHHHHH-HHHHHHhcCCCeEEEEEcCCchhhcCCccCCC
Confidence 3577787433 2223344777777663 46677764 555544333 32222345678777764332222111 11 1
Q ss_pred CcHHHHH-HHccCCCcE-EEeeCCHHHHHHHHHHHHHhCCCCEEEEec
Q 004968 514 CGAFDIT-FMSCLPNMI-VMAPSDEDELVDMVATVASIDDRPVCFRYP 559 (721)
Q Consensus 514 ~~~~dia-~~~~iPnl~-V~~Psd~~E~~~~l~~a~~~~~~P~~ir~~ 559 (721)
....|+. +.+.+ |+. -+...+.+|+...++.+++ .++|++|-..
T Consensus 126 ~~~~Df~~lA~a~-G~~~~~~v~~~~el~~al~~a~~-~~~p~lIeV~ 171 (202)
T PRK06163 126 SQTVDVVAIARGA-GLENSHWAADEAHFEALVDQALS-GPGPSFIAVR 171 (202)
T ss_pred CCCCCHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 1112333 33333 564 4567899999999999986 5899987653
|
|
| >PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=91.25 E-value=1.4 Score=51.50 Aligned_cols=115 Identities=17% Similarity=0.150 Sum_probs=80.0
Q ss_pred CcEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHH
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFD 518 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d 518 (721)
=|++.+ ..|++++.+|.|.|.. |...+|. ++.+.+..++--+ ..+...+.||+++...... .+. ..+|....
T Consensus 39 i~~v~~-~hE~~A~~~Adgyar~sg~~gv~~~t~GpG~~n~~~~l-~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~ 114 (548)
T PRK08978 39 VEHLLC-RHEQGAAMAAIGYARATGKVGVCIATSGPGATNLITGL-ADALLDSVPVVAITGQVSSPLIGT--DAFQEIDV 114 (548)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEecCCCccccCC--CCCcccch
Confidence 367765 8999999999999997 5444443 4788877777665 4556789999998754433 232 23565555
Q ss_pred HHHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 519 ITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 519 ia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
.++++.+-.+... -.+++++..++..|++. ..+|++|-+|...
T Consensus 115 ~~~~~~~tk~~~~-v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 161 (548)
T PRK08978 115 LGLSLACTKHSFL-VQSLEELPEIMAEAFEIASSGRPGPVLVDIPKDI 161 (548)
T ss_pred hccccCceeeEEE-ECCHHHHHHHHHHHHHHHhcCCCCcEEEecChhh
Confidence 5677766555433 35788888888888763 2479999998754
|
|
| >cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways | Back alignment and domain information |
|---|
Probab=91.22 E-value=7.2 Score=40.54 Aligned_cols=117 Identities=11% Similarity=0.159 Sum_probs=64.9
Q ss_pred CCCcEeeccccHHHHHHHHHHHHh----C------CCeeEEEec--HhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCC
Q 004968 441 FPERYFDVGMAEQHAVTFSAGLAC----G------GLKPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGS 508 (721)
Q Consensus 441 fp~R~~d~GIaE~~~v~~AaGlA~----~------G~~p~~~ty--s~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~ 508 (721)
+|.++++..+.-...+|.+..+|. . --++++++. ..|+...+..+.+. ...++|+++++-..+..|.
T Consensus 51 ~~~~~~~~~~~~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g~~~l~ta-~~~~l~i~ivVlNN~~yg~ 129 (237)
T cd02018 51 WAVPWVNSLFEDANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIGFGALSHS-LFRGEDITVIVLDNEVYSN 129 (237)
T ss_pred cCCCeeeccccCHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHhccHHHHHHH-HHcCCCeEEEEECCccccC
Confidence 456667765544466664444443 3 136777774 54554445444333 4578998887743332222
Q ss_pred CCCCcC--------------c----HHHH-HHHcc--CCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004968 509 DGPTQC--------------G----AFDI-TFMSC--LPNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 509 dG~TH~--------------~----~~di-a~~~~--iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~ 558 (721)
-+.+++ + ..|+ .+.+. ++......+.++.|+..+++.|++..++|++|-.
T Consensus 130 ~~~q~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~~~~~l~~al~~al~~~~GP~lI~v 200 (237)
T cd02018 130 TGGQRSGATPLGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPALKKHFLKVVKEAISRTDGPTFIHA 200 (237)
T ss_pred CCCCCCCCCcCCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 111111 0 0122 22232 3333434599999999999999852578998854
|
Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors. |
| >PRK08979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=91.21 E-value=5 Score=47.23 Aligned_cols=117 Identities=13% Similarity=0.094 Sum_probs=79.3
Q ss_pred CcEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHH
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDIT 520 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia 520 (721)
=|++.+ -.|++++.+|.|.|.. |...+|. ++.+.+..++--+ ..+-..+.||+++.............+|......
T Consensus 43 i~~v~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~l~gi-a~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~ 120 (572)
T PRK08979 43 IEHILV-RHEQAAVHMADGYARATGKVGVVLVTSGPGATNTITGI-ATAYMDSIPMVVLSGQVPSNLIGNDAFQECDMIG 120 (572)
T ss_pred CeEEEe-CcHHHHHHHHHHHHHHhCCCeEEEECCCchHhHHHHHH-HHHhhcCCCEEEEecCCCccccCCCCCcccchhH
Confidence 378876 8999999999999987 6555544 4788777777655 4556679999988743332111112355555556
Q ss_pred HHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 521 FMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 521 ~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
+++.+=.+ .....+++++...+..|++. ..+|++|.+|...
T Consensus 121 ~~~~itk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 165 (572)
T PRK08979 121 ISRPVVKH-SFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLPKDC 165 (572)
T ss_pred HhhhceeE-EEecCCHHHHHHHHHHHHHHHhCCCCCcEEEecCHhH
Confidence 67765443 34456788888888888763 3479999998764
|
|
| >PRK06882 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=91.21 E-value=4.6 Score=47.48 Aligned_cols=116 Identities=12% Similarity=0.071 Sum_probs=79.1
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~ 521 (721)
|++.+ -.|++++.+|.|.|.. |...+|. ++.+.+..++.-| ..+-..+.||+++..........-..+|......+
T Consensus 44 ~~v~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~~i-~~A~~~~~Pvlvi~G~~~~~~~~~~~~q~~d~~~l 121 (574)
T PRK06882 44 EHVLV-RHEQAAVHMADGYARSTGKVGCVLVTSGPGATNAITGI-ATAYTDSVPLVILSGQVPSNLIGTDAFQECDMLGI 121 (574)
T ss_pred eEEEe-ccHHHHHHHHHHHHHhhCCCeEEEECCCccHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCCcccccchhhh
Confidence 77776 8999999999999987 5443433 4778777777665 45567899999886433321111123565555566
Q ss_pred HccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 522 MSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 522 ~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
++.+-.+ .....++.++..++..|+.. ..+|++|-+|...
T Consensus 122 ~~~vtk~-s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 165 (574)
T PRK06882 122 SRPVVKH-SFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDIPKDM 165 (574)
T ss_pred hhcccce-EEEeCCHHHHHHHHHHHHHHHhcCCCCCEEEecCHHH
Confidence 7665443 35567888888888888763 3589999998763
|
|
| >PLN02470 acetolactate synthase | Back alignment and domain information |
|---|
Probab=90.87 E-value=5.1 Score=47.27 Aligned_cols=115 Identities=13% Similarity=0.113 Sum_probs=79.4
Q ss_pred CcEeeccccHHHHHHHHHHHHhC-CCeeEE-EecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHH
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFD 518 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~-G~~p~~-~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d 518 (721)
=|++.+ --|++++.+|.|.|.. |...+| .++.+.+..++.-| ..+-..+.||+++...... .+. ..+|....
T Consensus 52 i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gi-a~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~d~ 127 (585)
T PLN02470 52 IRNVLC-RHEQGEVFAAEGYAKASGKVGVCIATSGPGATNLVTGL-ADALLDSVPLVAITGQVPRRMIGT--DAFQETPI 127 (585)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHH-HHHHhcCCcEEEEecCCChhhcCC--CcCcccch
Confidence 378876 8999999999999987 644444 35888887777665 4556779999998643322 122 22555555
Q ss_pred HHHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 519 ITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 519 ia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
..+++.+-.+ .+...+++++..+++.|++. ..+|++|-+|...
T Consensus 128 ~~l~~~~tk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv 174 (585)
T PLN02470 128 VEVTRSITKH-NYLVMDVEDIPRVIREAFFLASSGRPGPVLVDIPKDI 174 (585)
T ss_pred hhhhhhheEE-EEEcCCHHHHHHHHHHHHHHhcCCCCCeEEEEecCch
Confidence 5666654433 23456888888888888764 3589999999764
|
|
| >PRK09124 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.74 E-value=5.6 Score=46.81 Aligned_cols=114 Identities=11% Similarity=0.004 Sum_probs=74.2
Q ss_pred cEeeccccHHHHHHHHHHHHhCCCeeEEE--ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACGGLKPFCI--IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDI 519 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~G~~p~~~--tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~di 519 (721)
|++.+ -.|++++.+|.|.|...-+|-++ ++.+....++.-+ ..+...+.||+++...... .|. ..+|.....
T Consensus 43 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gi-~~A~~~~~Pvl~i~G~~~~~~~~~--~~~Q~~d~~ 118 (574)
T PRK09124 43 EWMHT-RHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLHLINGL-FDCHRNHVPVLAIAAHIPSSEIGS--GYFQETHPQ 118 (574)
T ss_pred cEEEe-CcHHHHHHHHHHHHHhhCCcEEEEECCCCCHHHHHHHH-HHHhhcCCCEEEEecCCccccCCC--CCccccChh
Confidence 66654 69999999999999984444444 3666666666555 4556779999988643222 232 246666666
Q ss_pred HHHccCCCcEEEeeCCHHHHHHHHHHHHHh---CCCCEEEEecCCC
Q 004968 520 TFMSCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYPRGA 562 (721)
Q Consensus 520 a~~~~iPnl~V~~Psd~~E~~~~l~~a~~~---~~~P~~ir~~r~~ 562 (721)
.+++.+-.+. ....+++++...++.|+.. ..+|++|-+|...
T Consensus 119 ~l~~~itk~~-~~v~~~~~~~~~i~~A~~~A~~~~gPV~l~iP~Dv 163 (574)
T PRK09124 119 ELFRECSHYC-ELVSNPEQLPRVLAIAMRKAILNRGVAVVVLPGDV 163 (574)
T ss_pred hhcccceeee-EEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChhh
Confidence 7777654332 3356677766655555442 4589999998764
|
|
| >TIGR01504 glyox_carbo_lig glyoxylate carboligase | Back alignment and domain information |
|---|
Probab=90.73 E-value=7 Score=46.21 Aligned_cols=116 Identities=9% Similarity=0.061 Sum_probs=78.2
Q ss_pred cEeeccccHHHHHHHHHHHHhCC-Cee-EEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACGG-LKP-FCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDIT 520 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~G-~~p-~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia 520 (721)
|++.+ --|++++.+|-|.|... .+| +|. ++.+.+..++-.+ ..+...+.||+++.............+|......
T Consensus 43 ~~V~~-rhE~~A~~mAdgyaR~t~g~~gv~~~t~GpG~~N~~~gl-a~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~D~~~ 120 (588)
T TIGR01504 43 RHILA-RHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGL-YSASADSIPILCITGQAPRARLHKEDFQAVDIAA 120 (588)
T ss_pred cEEee-CCHHHHHHHHHHHHHhcCCCeEEEEECCCccHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCCcccccCHHH
Confidence 67664 77999999999999863 444 433 4777777666655 4556779999998744332111122366655556
Q ss_pred HHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 521 FMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 521 ~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
+++.+-.+ .....+++++..+++.|++. ..+|++|-+|+..
T Consensus 121 ~~~~vtk~-~~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv 165 (588)
T TIGR01504 121 IAKPVSKM-AVTVREAALVPRVLQQAFHLMRSGRPGPVLIDLPFDV 165 (588)
T ss_pred HhhhhceE-EEEcCCHHHHHHHHHHHHHHHccCCCCeEEEEeCcch
Confidence 77765443 34456888888888888763 3469999999875
|
Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism. |
| >TIGR02720 pyruv_oxi_spxB pyruvate oxidase | Back alignment and domain information |
|---|
Probab=90.55 E-value=2.2 Score=50.21 Aligned_cols=117 Identities=12% Similarity=0.087 Sum_probs=77.7
Q ss_pred CcEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHH
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDIT 520 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia 520 (721)
=||+.+ -.|++++.+|-|.|.. |...+|. ++.+.+..++.-+ ..+-..+.||+++.........+..++|......
T Consensus 39 i~~v~~-rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~n~~~~i-~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~id~~~ 116 (575)
T TIGR02720 39 IHYIQV-RHEEVGALAAAADAKLTGKIGVCFGSAGPGATHLLNGL-YDAKEDHVPVLALVGQVPTTGMNMDTFQEMNENP 116 (575)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHhhCCceEEEeCCCCcHHHHHHHH-HHHhhcCCCEEEEecCCccccCCCCCcceechhh
Confidence 467775 8899999999999986 5444443 4788877777665 4556679999998754433222334567666667
Q ss_pred HHccCCCcEEEeeCCHHHHHHHHHHHHH---hCCCCEEEEecCCC
Q 004968 521 FMSCLPNMIVMAPSDEDELVDMVATVAS---IDDRPVCFRYPRGA 562 (721)
Q Consensus 521 ~~~~iPnl~V~~Psd~~E~~~~l~~a~~---~~~~P~~ir~~r~~ 562 (721)
+++.+-.+ .....+++++..++..|+. ...+|++|-+|...
T Consensus 117 ~~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv 160 (575)
T TIGR02720 117 IYADVAVY-NRTAMTAESLPHVIDEAIRRAYAHNGVAVVTIPVDF 160 (575)
T ss_pred hhhhcceE-EEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEECcch
Confidence 77755333 2344556666555555443 25689999999764
|
Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name. |
| >PRK06112 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=90.44 E-value=2.1 Score=50.33 Aligned_cols=117 Identities=12% Similarity=0.075 Sum_probs=78.7
Q ss_pred CcEeeccccHHHHHHHHHHHHhCCCeeEEE--ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHH
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACGGLKPFCI--IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDIT 520 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~--tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia 520 (721)
=|++.+ ..|++++.+|.|.|..--+|-++ +..+.+..++--| ..+...+.||+++.........+-..+|......
T Consensus 50 i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~~~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~~~Q~~d~~~ 127 (578)
T PRK06112 50 IRQIAY-RTENAGGAMADGYARVSGKVAVVTAQNGPAATLLVAPL-AEALKASVPIVALVQDVNRDQTDRNAFQELDHIA 127 (578)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHHhCCCEEEEeCCCCcHHHHHHHH-HHHhhcCCCEEEEecCCccccCCCCCccccChhh
Confidence 477776 79999999999999873344333 4677776666655 4556789999988743332111223466665667
Q ss_pred HHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 521 FMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 521 ~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
+++.+-.+ .....+++++...+..|++. ..+|++|-+|...
T Consensus 128 l~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~Dv 172 (578)
T PRK06112 128 LFQSCTKW-VRRVTVAERIDDYVDQAFTAATSGRPGPVVLLLPADL 172 (578)
T ss_pred hhccccce-EEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEcCHhH
Confidence 77766554 34556777777777777653 2479999998764
|
|
| >cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv | Back alignment and domain information |
|---|
Probab=90.43 E-value=1.1 Score=45.42 Aligned_cols=115 Identities=15% Similarity=0.142 Sum_probs=65.3
Q ss_pred hCCCcEeeccc-c-HHHHHHHHHHHHhCC-CeeEEEec--HhhHHHHHHHHHHHhhcCCcceEEEE-cCCCCcCC-----
Q 004968 440 KFPERYFDVGM-A-EQHAVTFSAGLACGG-LKPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVI-TSAGLVGS----- 508 (721)
Q Consensus 440 ~fp~R~~d~GI-a-E~~~v~~AaGlA~~G-~~p~~~ty--s~Fl~ra~dqi~~~~a~~~lpVv~v~-~~~G~~G~----- 508 (721)
+.|.+|+..+- . =-.++..|.|++++. -++++++. ..|+.-. ..+ ..+...++|+++++ ...|+ |.
T Consensus 36 ~~~~~~~~~~~~gsmG~~lpaAiGa~la~p~~~vv~i~GDGsf~m~~-~eL-~Ta~~~~lpv~ivV~NN~~~-g~~~~~q 112 (205)
T cd02003 36 RTPGGYHLEYGYSCMGYEIAAGLGAKLAKPDREVYVLVGDGSYLMLH-SEI-VTAVQEGLKIIIVLFDNHGF-GCINNLQ 112 (205)
T ss_pred CCCCcEEcCCCcchhhhHHHHHHHHHHhCCCCeEEEEEccchhhccH-HHH-HHHHHcCCCCEEEEEECCcc-HHHHHHH
Confidence 45788886532 1 122444667766653 45666664 5665422 222 34566799987766 44433 21
Q ss_pred --CCC-----CcC-------------cHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004968 509 --DGP-----TQC-------------GAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 509 --dG~-----TH~-------------~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~ 558 (721)
.+. ... ...|..-++.--|+..+...+++|+...++.|++ .++|++|-.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-~~gp~lIeV 181 (205)
T cd02003 113 ESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVKTIEELKAALAKAKA-SDRTTVIVI 181 (205)
T ss_pred HHhcCccccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEECCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 000 000 0123332222236667777999999999999975 688998754
|
viciae IolD. IolD plays an important role in myo-inositol catabolism. |
| >PRK06276 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=90.30 E-value=2.2 Score=50.40 Aligned_cols=116 Identities=12% Similarity=0.076 Sum_probs=79.6
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~ 521 (721)
|++.+ -.|++++.+|.|.|.. |...++. ++.+.+.-++.-| ..+-..+.||+++.............+|......+
T Consensus 40 ~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~l~~i-~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l 117 (586)
T PRK06276 40 IHILT-RHEQAAAHAADGYARASGKVGVCVATSGPGATNLVTGI-ATAYADSSPVIALTGQVPTKLIGNDAFQEIDALGI 117 (586)
T ss_pred cEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHH-HHHHhcCCCEEEEeCCCCccccCCCCCccccHhhH
Confidence 77776 7999999999999987 5444433 4778877777665 56667899999987433321111234666556667
Q ss_pred HccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 522 MSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 522 ~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
++.+-.+. ..-.+++++...+..|++. ..+|++|-+|...
T Consensus 118 ~~~~tk~s-~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv 161 (586)
T PRK06276 118 FMPITKHN-FQIKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKDV 161 (586)
T ss_pred HhhhcceE-EecCCHHHHHHHHHHHHHHhcCCCCCcEEEEcChhH
Confidence 77665543 3446778888888887764 2579999998764
|
|
| >PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed | Back alignment and domain information |
|---|
Probab=89.99 E-value=7.6 Score=41.41 Aligned_cols=145 Identities=14% Similarity=0.137 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHcCCCeEEEecCCCCccChHHHHHhC-CCcEeeccccHHHHHHHHHHHHhC-CCeeEEEec--HhhHHH
Q 004968 405 DCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKF-PERYFDVGMAEQHAVTFSAGLACG-GLKPFCIIP--SAFLQR 480 (721)
Q Consensus 405 ~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~f-p~R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~ty--s~Fl~r 480 (721)
+.+.++|.+..-..++++++ .|++-.. .+..-+ ++++. +.. ..++.+|.|++++ --++++++. .+|+.-
T Consensus 29 ~~v~~al~e~~~~~~d~ivv-sdiGc~~---~~~~~~~~~~~~-~~~--G~alPaAiGaklA~Pdr~VV~i~GDG~f~~~ 101 (277)
T PRK09628 29 KSIIRAIDKLGWNMDDVCVV-SGIGCSG---RFSSYVNCNTVH-TTH--GRAVAYATGIKLANPDKHVIVVSGDGDGLAI 101 (277)
T ss_pred HHHHHHHHHhcCCCCCEEEE-eCcCHHH---HhhccCCCCcee-ecc--ccHHHHHHHHHHHCCCCeEEEEECchHHHHh
Confidence 34556665553233455444 4655321 111122 23433 222 2677788888876 245666664 556542
Q ss_pred HHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCc--------------C----cHHHHHHHccCCCcEE---EeeCCHHHH
Q 004968 481 AYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQ--------------C----GAFDITFMSCLPNMIV---MAPSDEDEL 539 (721)
Q Consensus 481 a~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH--------------~----~~~dia~~~~iPnl~V---~~Psd~~E~ 539 (721)
. .+-+..++..++||++++-.-+..|.-+.+. . ..+|+.-++.--|..- ....+++|+
T Consensus 102 g-~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v~~~~el 180 (277)
T PRK09628 102 G-GNHTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKGMWTVTAQYGNIDPTFDACKLATAAGASFVARESVIDPQKL 180 (277)
T ss_pred h-HHHHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCCceeeeccCCCcCCCCCHHHHHHHCCCceEEEEccCCHHHH
Confidence 2 2322345778999988885443333211000 0 1122222222124432 578999999
Q ss_pred HHHHHHHHHhCCCCEEEEe
Q 004968 540 VDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 540 ~~~l~~a~~~~~~P~~ir~ 558 (721)
..+++.|++ .++|++|-.
T Consensus 181 ~~al~~Al~-~~Gp~lIeV 198 (277)
T PRK09628 181 EKLLVKGFS-HKGFSFFDV 198 (277)
T ss_pred HHHHHHHHh-CCCCEEEEE
Confidence 999999987 689998855
|
|
| >PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated | Back alignment and domain information |
|---|
Probab=89.99 E-value=4.6 Score=47.45 Aligned_cols=151 Identities=14% Similarity=0.160 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHcC--CCeEEEecCCCCccCh---HHHHHhCCC-cEeeccccHHHHHHHHHHHHhC-CCeeE-EEecHh
Q 004968 405 DCFIEALVMEAEKD--KDIVVVHAGMEMDLSL---QLFQEKFPE-RYFDVGMAEQHAVTFSAGLACG-GLKPF-CIIPSA 476 (721)
Q Consensus 405 ~~~~~~L~~~~~~d--~~iv~i~ad~~~~~~l---~~f~~~fp~-R~~d~GIaE~~~v~~AaGlA~~-G~~p~-~~tys~ 476 (721)
...++.|.+.+++. ..++. ++|+.-+ +.+. +.++ |++.+ .-|++++.+|-|.|.. |...+ +.|+.+
T Consensus 9 ~~~a~~l~~~L~~~GV~~vFg----vpG~~~~~l~~~l~-~~~~i~~v~~-~hE~~A~~aAdgyar~tg~~~v~~vt~Gp 82 (568)
T PRK07449 9 TLWAAVILEELTRLGVRHVVI----APGSRSTPLTLAAA-EHPRLRLHTH-FDERSAGFLALGLAKASKRPVAVIVTSGT 82 (568)
T ss_pred HHHHHHHHHHHHHcCCCEEEE----CCCCccHHHHHHHH-hCCCcEEEee-cCcccHHHHHHHHHHhhCCCEEEEECCcc
Confidence 34455555555543 23333 3343322 3332 2233 77765 8999999999999987 54333 446888
Q ss_pred hHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHH----H-HHHHHHHHH---H
Q 004968 477 FLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDED----E-LVDMVATVA---S 548 (721)
Q Consensus 477 Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~----E-~~~~l~~a~---~ 548 (721)
.+..++.-| ..+...+.||+++.........+-..+|......+++.+-...+-.|.... + +..+++.++ .
T Consensus 83 G~~N~l~~i-~~A~~~~~Pvl~IsG~~~~~~~~~~~~q~~d~~~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~a~~~a~~ 161 (568)
T PRK07449 83 AVANLYPAV-IEAGLTGVPLIVLTADRPPELRDCGANQAIDQLGLFGSYPFTSLALPEPTQDILAYWLVTTIDAALAAQT 161 (568)
T ss_pred HHHhhhHHH-HHHhhcCCcEEEEECCCCHHHhcCCCCceecHhhHhhhhhhhccCCCCCCchhHHHHHHHHHHHHHHhcC
Confidence 888888766 466678999999874433311111235666667788876645555565521 1 233444432 2
Q ss_pred hCCCCEEEEecCCC
Q 004968 549 IDDRPVCFRYPRGA 562 (721)
Q Consensus 549 ~~~~P~~ir~~r~~ 562 (721)
...+|++|-+|...
T Consensus 162 ~~~GPV~i~iP~Dv 175 (568)
T PRK07449 162 LQAGPVHINCPFRE 175 (568)
T ss_pred CCCCCEEEeCCCCC
Confidence 34689999998753
|
|
| >PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=89.60 E-value=4.7 Score=43.17 Aligned_cols=145 Identities=14% Similarity=0.217 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEecCCCCccChHHHHHhCCCcEeecc-c--cHHHHHHHHHHHHhCC-CeeEEEec--Hh
Q 004968 403 YDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVG-M--AEQHAVTFSAGLACGG-LKPFCIIP--SA 476 (721)
Q Consensus 403 ~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~fp~R~~d~G-I--aE~~~v~~AaGlA~~G-~~p~~~ty--s~ 476 (721)
...++.++|.++.....+.+++ .|++-+..+ | +|++.+ + .=..++.+|.|++++. -++++++. .+
T Consensus 28 il~~l~~al~~l~~~p~d~vvv-sdiGc~~~~-------~-~~~~~~~~~g~mG~alpaAiGaklA~Pd~~VV~i~GDG~ 98 (286)
T PRK11867 28 ILAALQRALAELGLDPENVAVV-SGIGCSGRL-------P-GYINTYGFHTIHGRALAIATGLKLANPDLTVIVVTGDGD 98 (286)
T ss_pred HHHHHHHHHHHhCCCCCcEEEE-eCCcccccc-------C-ccccccchhhhhhcHHHHHHHHHHhCCCCcEEEEeCccH
Confidence 4556666665554334455444 466543311 2 344432 2 2234556777877763 45666664 43
Q ss_pred hHHHHHHHHHHHhhcCCcceEEEEcCCCCcC----CCCC----------CcCcH----HHH-HHHccCCC--cEEEeeCC
Q 004968 477 FLQRAYDQVVNDVDQQRLPVRFVITSAGLVG----SDGP----------TQCGA----FDI-TFMSCLPN--MIVMAPSD 535 (721)
Q Consensus 477 Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G----~dG~----------TH~~~----~di-a~~~~iPn--l~V~~Psd 535 (721)
+++-+...+. .++..++|+++++-.-+..| ...+ +..+. .|. ++...... +......+
T Consensus 99 ~f~mg~~eL~-tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~ 177 (286)
T PRK11867 99 ALAIGGNHFI-HALRRNIDITYILFNNQIYGLTKGQYSPTSPVGFVTKTTPYGSIEPPFNPVELALGAGATFVARGFDSD 177 (286)
T ss_pred HHhCCHHHHH-HHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCCcccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCC
Confidence 3444454454 34677999888774333222 1111 00111 122 22233322 22335789
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEe
Q 004968 536 EDELVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 536 ~~E~~~~l~~a~~~~~~P~~ir~ 558 (721)
++|+..+++.|++ .++|++|-.
T Consensus 178 ~~el~~al~~Al~-~~Gp~lIev 199 (286)
T PRK11867 178 VKQLTELIKAAIN-HKGFSFVEI 199 (286)
T ss_pred HHHHHHHHHHHHh-CCCCEEEEE
Confidence 9999999999986 588988854
|
|
| >PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria | Back alignment and domain information |
|---|
Probab=89.52 E-value=5.3 Score=40.27 Aligned_cols=115 Identities=17% Similarity=0.198 Sum_probs=70.5
Q ss_pred CcEEEEEechhh-HHHHHHHHHHHhC--CCCeEEeecCcc---c-----c--ccHHHHHHHhccCCeEEEEcCCCCCChH
Q 004968 588 KDVALLGYGAMV-QNCLKARALLSKL--GIDVTVADARFC---K-----P--LDIKLVRELCQNHTFLITVEEGSIGGFG 654 (721)
Q Consensus 588 ~dv~Iva~Gs~v-~~al~Aa~~L~~~--Gi~v~VId~~~l---~-----P--lD~e~i~~l~~~~~~vvvvEe~~~gG~g 654 (721)
.||+|.|.|... .+++.|++.|++. +++++|||+--| . | |+.+.+.++.-+.+.||+. .-|+.
T Consensus 35 PDVVlA~aGd~pT~E~lAA~~lLr~~~P~lkiRvVNVvDLm~L~~~~~hPhglsd~~Fd~lFT~DkPViFa----fHGYp 110 (203)
T PF09363_consen 35 PDVVLACAGDVPTLEVLAAASLLREHFPELKIRVVNVVDLMKLQPPSEHPHGLSDEEFDALFTKDKPVIFA----FHGYP 110 (203)
T ss_dssp -SEEEEEESHHHHHHHHHHHHHHHHT--T--EEEEEESBGGGGS-TTT-TTS--HHHHHHHH-SSS-EEEE----ESSEH
T ss_pred CCEEEEecCchhhHHHHHHHHHHHHhccCceEEEEEEeEccccCCCCCCCCcCCHHHHHHhcCCCCCEEEE----cCCCH
Confidence 599999999866 8999999999998 999987776544 2 2 6778898888776777653 24677
Q ss_pred HHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHh
Q 004968 655 SHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLL 710 (721)
Q Consensus 655 s~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l 710 (721)
..|...+-.+.- .-++..-|...+ +..-++-+++-..++|-=+++..+.+.+
T Consensus 111 ~~i~~L~~~R~n---~~~~hV~GY~Ee-GttTTPFDM~vlN~~dRfhLa~dai~~~ 162 (203)
T PF09363_consen 111 WLIHRLLFGRPN---HDRFHVHGYREE-GTTTTPFDMRVLNGMDRFHLAKDAIRRV 162 (203)
T ss_dssp HHHHHHTTTSTT---GGGEEEEEE-S----SS-HHHHHHCTT-SHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCC---CCCeEEEeeccC-CCcCchHHHHHHhCCCHHHHHHHHHHHh
Confidence 777766554321 234555554222 2333577777778888666665555544
|
PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A. |
| >PRK06546 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.48 E-value=6.2 Score=46.53 Aligned_cols=114 Identities=13% Similarity=0.049 Sum_probs=76.7
Q ss_pred cEeeccccHHHHHHHHHHHHhCCCee-EEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACGGLKP-FCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDI 519 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~G~~p-~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~di 519 (721)
|++.+ --|++++.+|-|.|...-+| +|. +..+.+..++.-+ ..+-..+.||+++...... .+. | .+|...+.
T Consensus 43 ~~i~~-rhE~~A~~mAdgyar~tgk~~v~~v~~GpG~~N~~~gl-~~A~~~~~Pvl~I~G~~~~~~~~~-~-~~Qe~d~~ 118 (578)
T PRK06546 43 EWVHV-RHEEAAAFAAAAEAQLTGKLAVCAGSCGPGNLHLINGL-YDAHRSGAPVLAIASHIPSAQIGS-G-FFQETHPD 118 (578)
T ss_pred eEEEe-CcHHHHHHHHHhHHHhhCCceEEEECCCCcHHHHHHHH-HHHHhcCCCEEEEeCCCCccccCC-C-CccccChh
Confidence 67775 79999999999999984444 443 3567777666655 4556789999998743322 122 2 35655556
Q ss_pred HHHccCCCcEEEeeCCHHHHHHHHHHHHHh---CCCCEEEEecCCC
Q 004968 520 TFMSCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYPRGA 562 (721)
Q Consensus 520 a~~~~iPnl~V~~Psd~~E~~~~l~~a~~~---~~~P~~ir~~r~~ 562 (721)
.+++.+-.+ .+...+++++..++..|+.. ..+|++|-+|...
T Consensus 119 ~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~lP~Dv 163 (578)
T PRK06546 119 RLFVECSGY-CEMVSSAEQAPRVLHSAIQHAVAGGGVSVVTLPGDI 163 (578)
T ss_pred hhcccceee-EeEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcChhh
Confidence 677755333 35667777777777766652 3579999998754
|
|
| >PRK06456 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=89.38 E-value=2.7 Score=49.37 Aligned_cols=114 Identities=17% Similarity=0.151 Sum_probs=78.5
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDI 519 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~di 519 (721)
|++.+ ..|++++.+|.|.|.. |...+|. ++.+.+..++.-| ..+-..+.||+++...... .+.+ .+|.....
T Consensus 45 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~l~gi-~~A~~~~~Pvl~i~G~~~~~~~~~~--~~q~~d~~ 120 (572)
T PRK06456 45 RHVLM-RHEQAAAHAADGYARASGVPGVCTATSGPGTTNLVTGL-ITAYWDSSPVIAITGQVPRSVMGKM--AFQEADAM 120 (572)
T ss_pred eEEEe-CcHHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHH-HHHHhhCCCEEEEecCCCccccCCC--Cccccchh
Confidence 66665 8899999999999987 5444444 5888887777665 4556779999998743332 2332 24444445
Q ss_pred HHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 520 TFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 520 a~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
.+++.+-.+. +...+++++..++..|+.. ..+|++|-+|...
T Consensus 121 ~i~~~~tk~~-~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 166 (572)
T PRK06456 121 GVFENVTKYV-IGIKRIDEIPQWIKNAFYIATTGRPGPVVIDIPRDI 166 (572)
T ss_pred hhhhccceeE-EEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecChhH
Confidence 6777665543 4446788888888777752 3589999998754
|
|
| >cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc) | Back alignment and domain information |
|---|
Probab=89.03 E-value=1.3 Score=44.54 Aligned_cols=117 Identities=9% Similarity=0.125 Sum_probs=68.7
Q ss_pred HhCCCcEeeccc-cH-HHHHHHHHHHHhCC-CeeEEEec--HhhHHHHHHHHHHHhhcCCcceEEEE-cCCCCcCCC---
Q 004968 439 EKFPERYFDVGM-AE-QHAVTFSAGLACGG-LKPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVI-TSAGLVGSD--- 509 (721)
Q Consensus 439 ~~fp~R~~d~GI-aE-~~~v~~AaGlA~~G-~~p~~~ty--s~Fl~ra~dqi~~~~a~~~lpVv~v~-~~~G~~G~d--- 509 (721)
-..|.+|+..+- .= -..+..|.|++++. -++++++. ..|+.-.-+ +. -+...++|+++++ ...|+ |..
T Consensus 40 ~~~~~~~~~~~~~g~mG~~lpaaiGa~la~p~r~vv~i~GDG~f~m~~~e-L~-Ta~~~~lpvi~vV~NN~~y-g~~~~~ 116 (196)
T cd02013 40 FEKPRSFIAPLSFGNCGYALPAIIGAKAAAPDRPVVAIAGDGAWGMSMME-IM-TAVRHKLPVTAVVFRNRQW-GAEKKN 116 (196)
T ss_pred cCCCCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEEEcchHHhccHHH-HH-HHHHhCCCeEEEEEECchh-HHHHHH
Confidence 345788886522 21 33566788877663 46666664 666654333 32 3566789988877 44443 210
Q ss_pred -----CC-----CcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHH--hCCCCEEEEec
Q 004968 510 -----GP-----TQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVAS--IDDRPVCFRYP 559 (721)
Q Consensus 510 -----G~-----TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~--~~~~P~~ir~~ 559 (721)
+. ... ..|+.-++.--|+.-..-.++.|+...++.|++ +.++|++|-..
T Consensus 117 q~~~~~~~~~~~~~~-~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~~~p~liev~ 177 (196)
T cd02013 117 QVDFYNNRFVGTELE-SESFAKIAEACGAKGITVDKPEDVGPALQKAIAMMAEGKTTVIEIV 177 (196)
T ss_pred HHHHcCCCcccccCC-CCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHhcCCCCCeEEEEEE
Confidence 10 011 122222222225666788899999999999975 14789988553
|
Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity. |
| >PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=88.99 E-value=3.3 Score=49.18 Aligned_cols=117 Identities=14% Similarity=0.106 Sum_probs=79.4
Q ss_pred CcEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHH
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDIT 520 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia 520 (721)
=||+.+ -.|+.++.+|.|.|.. |...+|. ++.+.+..++.-+ .++..-+.||+++..........-..+|......
T Consensus 61 i~~i~~-rhE~~Aa~aA~gyar~tgk~gv~~~t~GPG~~n~l~gl-~~A~~d~~Pvl~i~G~~~~~~~~~~~~Qe~d~~~ 138 (616)
T PRK07418 61 LKHILV-RHEQGAAHAADGYARATGKVGVCFGTSGPGATNLVTGI-ATAQMDSVPMVVITGQVPRPAIGTDAFQETDIFG 138 (616)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH-HHHHhcCCCEEEEecCCCccccCCCCcccccHHH
Confidence 378887 8999999999999987 5444444 4777777777655 5667789999988744333211112355555556
Q ss_pred HHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 521 FMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 521 ~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
+++.+-.+ .....+++++..++..|++. ..+|++|.+|...
T Consensus 139 ~~~~vtk~-~~~v~~~~~i~~~l~~A~~~A~~~~~GPv~l~iP~Dv 183 (616)
T PRK07418 139 ITLPIVKH-SYVVRDPSDMARIVAEAFHIASSGRPGPVLIDIPKDV 183 (616)
T ss_pred Hhhhccee-EEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecchhh
Confidence 66654433 24467888888888887763 3489999998754
|
|
| >PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=88.91 E-value=2.6 Score=49.41 Aligned_cols=115 Identities=17% Similarity=0.157 Sum_probs=77.6
Q ss_pred CcEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHH
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFD 518 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d 518 (721)
=+++.+ -.|++++.+|.|.|.. |...+|. ++.+.+..++.-| ..+...+.||+++...... .+.+ .+|....
T Consensus 46 i~~v~~-~hE~~A~~~Adgyar~tg~~~v~~~t~GpG~~n~~~gl-~~A~~~~~Pvl~i~G~~~~~~~~~~--~~q~~d~ 121 (561)
T PRK06048 46 LRHILV-RHEQAAAHAADGYARATGKVGVCVATSGPGATNLVTGI-ATAYMDSVPIVALTGQVPRSMIGND--AFQEADI 121 (561)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEeccCCccccCCC--Cccccch
Confidence 477776 8999999999999987 6444443 4778877777665 4666789999988643332 1322 2444444
Q ss_pred HHHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 519 ITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 519 ia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
.++++.+-.+ .+.-.++.++..++..|++. ..+|++|.+|...
T Consensus 122 ~~~~~~itk~-s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~dv 168 (561)
T PRK06048 122 TGITMPITKH-NYLVQDAKDLPRIIKEAFHIASTGRPGPVLIDLPKDV 168 (561)
T ss_pred hhhccCcceE-EEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEecChhh
Confidence 4556554333 23346788888888887763 3589999998764
|
|
| >cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl) | Back alignment and domain information |
|---|
Probab=88.88 E-value=1.2 Score=45.04 Aligned_cols=120 Identities=13% Similarity=0.118 Sum_probs=70.4
Q ss_pred HHHhCCCcEeeccc-c-HHHHHHHHHHHHhCC-CeeEEEec--HhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCC--
Q 004968 437 FQEKFPERYFDVGM-A-EQHAVTFSAGLACGG-LKPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSD-- 509 (721)
Q Consensus 437 f~~~fp~R~~d~GI-a-E~~~v~~AaGlA~~G-~~p~~~ty--s~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~d-- 509 (721)
+.-..|.+|++.+- . =-..+..|.|++++. -+|++++. ..|+.-.-| + .-+...++|+++++-..+..|..
T Consensus 42 ~~~~~~~~~~~~~~~GsmG~~lpaaiGa~la~p~~~vv~i~GDG~f~m~~~e-L-~Ta~~~~lpviivV~NN~~yg~~~~ 119 (202)
T cd02006 42 LHVYKPRHWINCGQAGPLGWTVPAALGVAAADPDRQVVALSGDYDFQFMIEE-L-AVGAQHRIPYIHVLVNNAYLGLIRQ 119 (202)
T ss_pred cCcCCCCeEEccCCccchhhhhHHHHhHHhhCCCCeEEEEEeChHhhccHHH-H-HHHHHhCCCeEEEEEeCchHHHHHH
Confidence 33355788987642 2 122556777877663 46777764 666554433 2 24567799988877444332210
Q ss_pred ------C-----CCcCc---------HHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHH---hCCCCEEEEe
Q 004968 510 ------G-----PTQCG---------AFDITFMSCLPNMIVMAPSDEDELVDMVATVAS---IDDRPVCFRY 558 (721)
Q Consensus 510 ------G-----~TH~~---------~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~---~~~~P~~ir~ 558 (721)
+ ..+.. ..|.+-++.--|+.-+...++.|+...++.|++ ..++|++|-.
T Consensus 120 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~~~~p~liev 191 (202)
T cd02006 120 AQRAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVTKPEELAAAFEQAKKLMAEHRVPVVVEA 191 (202)
T ss_pred HHHHhcCccccccccccccccccCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHhcccCCCcEEEEE
Confidence 0 00110 122222222226677888999999999999985 2578998854
|
E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors. |
| >TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family | Back alignment and domain information |
|---|
Probab=88.66 E-value=8.7 Score=44.87 Aligned_cols=115 Identities=12% Similarity=0.026 Sum_probs=71.9
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCC-cCc--H
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPT-QCG--A 516 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~T-H~~--~ 516 (721)
|++. .--|++++-+|-|.|.. |...+|. ++.+....++.-| ..+...+.||+++...... .+.+.-. ||. .
T Consensus 40 ~~v~-~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gi-a~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~ 117 (535)
T TIGR03394 40 PLHT-LSHEPAVGFAADAAARYRGTLGVAAVTYGAGAFNMVNAI-AGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTL 117 (535)
T ss_pred eEEc-ccCcchHHHHHhHHHHhhCCceEEEEecchHHHhhhhHH-HHHhhcCCCEEEEECCCCcccccCCceeEeeccch
Confidence 7777 48999999999999997 5555544 4778877777655 4556679999998743222 1332223 443 2
Q ss_pred H-HHHHHccCCCcEEEeeCCHHHHHH----HHHHHHHhCCCCEEEEecCCC
Q 004968 517 F-DITFMSCLPNMIVMAPSDEDELVD----MVATVASIDDRPVCFRYPRGA 562 (721)
Q Consensus 517 ~-dia~~~~iPnl~V~~Psd~~E~~~----~l~~a~~~~~~P~~ir~~r~~ 562 (721)
. ...+++.+-.+. ....++.++.. +++.|+. ..+|++|-+|+..
T Consensus 118 ~~~~~~~~~vtk~~-~~v~~~~~~~~~~~~A~~~a~~-~~gPv~i~iP~Dv 166 (535)
T TIGR03394 118 DSQFQVFKEVTCDQ-AVLDDPATAPAEIARVLGSARE-LSRPVYLEIPRDM 166 (535)
T ss_pred HHHHHhhhhheEEE-EEeCChHHhHHHHHHHHHHHHH-CCCCEEEEechhh
Confidence 2 235666543332 22344444444 4555544 5689999999864
|
A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase. |
| >CHL00099 ilvB acetohydroxyacid synthase large subunit | Back alignment and domain information |
|---|
Probab=88.08 E-value=3.9 Score=48.32 Aligned_cols=114 Identities=17% Similarity=0.190 Sum_probs=76.2
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDI 519 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~di 519 (721)
|++.+ ..|++++.+|.|.|.. |...+|. ++.+.+..++.-| ..+-..+.||+++....+. .+.+ .+|.....
T Consensus 53 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~--~~q~~d~~ 128 (585)
T CHL00099 53 KHILV-RHEQGAAHAADGYARSTGKVGVCFATSGPGATNLVTGI-ATAQMDSVPLLVITGQVGRAFIGTD--AFQEVDIF 128 (585)
T ss_pred eEEEe-cCHHHHHHHHHHHHHhcCCcEEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCC--Cccccchh
Confidence 67774 8999999999999987 5444443 4788777777655 5666789999998743332 2322 24444334
Q ss_pred HHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 520 TFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 520 a~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
.+++.+-.+ .....+++++..+++.|+.. ..+|++|-+|...
T Consensus 129 ~~~~~~tk~-~~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv 174 (585)
T CHL00099 129 GITLPIVKH-SYVVRDARDISRIVAEAFYIAKHGRPGPVLIDIPKDV 174 (585)
T ss_pred hhhcCceeE-EEEeCCHHHHHHHHHHHHHHHccCCCCeEEEecChhh
Confidence 455544322 34456788888888887753 2479999998764
|
|
| >cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE) | Back alignment and domain information |
|---|
Probab=88.00 E-value=5.4 Score=39.48 Aligned_cols=110 Identities=16% Similarity=0.270 Sum_probs=58.5
Q ss_pred CCCcEeeccccHHHHHHHHHHHHhCCCeeEEEec--HhhHHHHHHHHHHHhhcCC-cceEEEE-cCCCCcCCCCCCcCc-
Q 004968 441 FPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIP--SAFLQRAYDQVVNDVDQQR-LPVRFVI-TSAGLVGSDGPTQCG- 515 (721)
Q Consensus 441 fp~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~ty--s~Fl~ra~dqi~~~~a~~~-lpVv~v~-~~~G~~G~dG~TH~~- 515 (721)
.|.+|+..|.- -..+..|.|++++..++++++. ..|+.- ...+ ..++..+ .|+++++ ...|. +..+.++..
T Consensus 34 ~~~~~~~~g~m-G~~lp~AiGaala~~~~vv~i~GDG~f~m~-~~el-~ta~~~~~~~l~vvV~NN~~~-~~~~~~~~~~ 109 (179)
T cd03372 34 RPLNFYMLGSM-GLASSIGLGLALAQPRKVIVIDGDGSLLMN-LGAL-ATIAAEKPKNLIIVVLDNGAY-GSTGNQPTHA 109 (179)
T ss_pred cccccccccch-hhHHHHHHHHHhcCCCcEEEEECCcHHHhC-HHHH-HHHHHcCCCCEEEEEEcCccc-cccCCCCCCC
Confidence 46677743321 1334477777766447788775 455422 2223 2334444 3555554 44443 222221111
Q ss_pred --HHHH-HHHccCCCcEEEeeC-CHHHHHHHHHHHHHhCCCCEEEEe
Q 004968 516 --AFDI-TFMSCLPNMIVMAPS-DEDELVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 516 --~~di-a~~~~iPnl~V~~Ps-d~~E~~~~l~~a~~~~~~P~~ir~ 558 (721)
..|. .+.+.. |+...... +++|+...+.+++ ++|.+|-.
T Consensus 110 ~~~~d~~~lA~a~-G~~~~~v~~~~~el~~al~~a~---~gp~lIev 152 (179)
T cd03372 110 GKKTDLEAVAKAC-GLDNVATVASEEAFEKAVEQAL---DGPSFIHV 152 (179)
T ss_pred CCCCCHHHHHHHc-CCCeEEecCCHHHHHHHHHHhc---CCCEEEEE
Confidence 1122 233332 55555566 9999999999986 68998755
|
M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors. |
| >TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase | Back alignment and domain information |
|---|
Probab=87.76 E-value=3.8 Score=47.97 Aligned_cols=116 Identities=10% Similarity=0.068 Sum_probs=79.6
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCc--CCCCCCcCcHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLV--GSDGPTQCGAFDI 519 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~--G~dG~TH~~~~di 519 (721)
|++.+ --|++++.+|.|.|.. |...+|. ++.+.+..+..-| ..+...+.||+++....... +..-..+|.....
T Consensus 42 ~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~gi-a~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~ 119 (554)
T TIGR03254 42 RYIGF-RHEQSAGYAAAAAGFLTQKPGVCLTVSAPGFLNGLTAL-ANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQL 119 (554)
T ss_pred cEEEe-CCHHHHHHHHHHHHHHhCCCEEEEEccCccHHhHHHHH-HHHHhcCCCEEEEEccCCccccccCCCCcchhhHH
Confidence 77775 8999999999999987 6545544 4677777777655 45567899999886433221 1112236666666
Q ss_pred HHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 520 TFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 520 a~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
.+++.+-.+ .+...++.++..++..|++. ..+|++|-+|...
T Consensus 120 ~~~~~vtk~-~~~v~~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~Dv 165 (554)
T TIGR03254 120 AAAKPFAKA-AYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLPAAV 165 (554)
T ss_pred HHhhhhhee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHHH
Confidence 777766554 45566788887777777652 3468999998764
|
In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase. |
| >TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase | Back alignment and domain information |
|---|
Probab=86.98 E-value=8.7 Score=43.52 Aligned_cols=115 Identities=15% Similarity=0.111 Sum_probs=72.4
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEE-EecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDI 519 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~-~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~di 519 (721)
|++.+ ..|++++-||-|.|.. |...+| .|+.+....++.-+ ..+...+.||+++...... .+. ..+|.....
T Consensus 40 ~~v~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~gl-~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~ 115 (432)
T TIGR00173 40 RVHVH-IDERSAGFFALGLAKASGRPVAVVCTSGTAVANLLPAV-IEASYSGVPLIVLTADRPPELRGC--GANQTIDQP 115 (432)
T ss_pred EEEEe-cCCccHHHHHHHHHhccCCCEEEEECCcchHhhhhHHH-HHhcccCCcEEEEeCCCCHHHhCC--CCCcccchh
Confidence 77765 8999999999999998 544343 45878777776655 4556789999998743332 232 225555566
Q ss_pred HHHccCCCcEE--EeeCCH---HHHHHHHHHHHH----hCCCCEEEEecCCC
Q 004968 520 TFMSCLPNMIV--MAPSDE---DELVDMVATVAS----IDDRPVCFRYPRGA 562 (721)
Q Consensus 520 a~~~~iPnl~V--~~Psd~---~E~~~~l~~a~~----~~~~P~~ir~~r~~ 562 (721)
.+++.+-.+.. -.|.+. .++..+++.|++ -..+|++|-+|...
T Consensus 116 ~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 167 (432)
T TIGR00173 116 GLFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPFRE 167 (432)
T ss_pred hHHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCCCC
Confidence 77776554432 334431 114444444443 24579999998754
|
2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis. |
| >cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis | Back alignment and domain information |
|---|
Probab=86.52 E-value=5 Score=40.40 Aligned_cols=97 Identities=10% Similarity=0.169 Sum_probs=57.4
Q ss_pred HHHHHHHHhC----C-CeeEEEecHhh-HH--HHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCC
Q 004968 456 VTFSAGLACG----G-LKPFCIIPSAF-LQ--RAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPN 527 (721)
Q Consensus 456 v~~AaGlA~~----G-~~p~~~tys~F-l~--ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPn 527 (721)
+++|.|+|++ | -++++++..+. ++ ..++.+ +.++...+|++++++..+. +.+++|. ...+ .++. -|
T Consensus 81 l~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal-~~A~~~~~~li~vvdnN~~-~~~~~~~-~~~~--~~~a-~G 154 (195)
T cd02007 81 ISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEAL-NNAGYLKSNMIVILNDNEM-SISPNVG-TPGN--LFEE-LG 154 (195)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHH-HHHHHhCCCEEEEEECCCc-ccCCCCC-CHHH--HHHh-cC
Confidence 3455555554 3 24455554333 12 334444 4556668999999988775 3445554 2222 3333 24
Q ss_pred cEE---EeeCCHHHHHHHHHHHHHhCCCCEEEEec
Q 004968 528 MIV---MAPSDEDELVDMVATVASIDDRPVCFRYP 559 (721)
Q Consensus 528 l~V---~~Psd~~E~~~~l~~a~~~~~~P~~ir~~ 559 (721)
+.+ +...|.+++...++.+.+ .++|++|...
T Consensus 155 ~~~~~~vdG~d~~~l~~a~~~a~~-~~~P~~I~~~ 188 (195)
T cd02007 155 FRYIGPVDGHNIEALIKVLKEVKD-LKGPVLLHVV 188 (195)
T ss_pred CCccceECCCCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 433 456688999999988865 6789988653
|
Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6). |
| >cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor | Back alignment and domain information |
|---|
Probab=85.84 E-value=8.9 Score=38.45 Aligned_cols=102 Identities=7% Similarity=0.113 Sum_probs=56.6
Q ss_pred HHHHHHHHHhC-CCeeEEEec--HhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcC--------------c--
Q 004968 455 AVTFSAGLACG-GLKPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQC--------------G-- 515 (721)
Q Consensus 455 ~v~~AaGlA~~-G~~p~~~ty--s~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~--------------~-- 515 (721)
.+..|.|++++ .-++++++. ..|++-....+ ..+...++|+++++-.-+..|.-+.+++ +
T Consensus 56 glpaAiGa~la~p~r~Vv~i~GDGs~f~m~~~eL-~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~~~~~~~~~~~~~~~~ 134 (193)
T cd03375 56 ALAVATGVKLANPDLTVIVVSGDGDLAAIGGNHF-IHAARRNIDITVIVHNNQIYGLTKGQASPTTPEGFKTKTTPYGNI 134 (193)
T ss_pred HHHHHHHHHHhCCCCeEEEEeccchHhhccHHHH-HHHHHhCCCeEEEEEcCcccccCCCccCCCCCCCCcccCCCCCCC
Confidence 34477777776 356777764 44433333333 2345678998877633332222111100 0
Q ss_pred --HHHHH-HHccC--CCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004968 516 --AFDIT-FMSCL--PNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 516 --~~dia-~~~~i--Pnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~ 558 (721)
..|+. +...+ ++.......++.|+...++.|++ .++|++|-.
T Consensus 135 ~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~al~-~~gp~vIev 181 (193)
T cd03375 135 EEPFNPLALALAAGATFVARGFSGDIKQLKEIIKKAIQ-HKGFSFVEV 181 (193)
T ss_pred CCCCCHHHHHHHCCCCEEEEEecCCHHHHHHHHHHHHh-cCCCEEEEE
Confidence 01222 22222 22222468999999999999986 688998854
|
In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity. |
| >PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=85.02 E-value=7.8 Score=41.35 Aligned_cols=149 Identities=10% Similarity=0.141 Sum_probs=79.3
Q ss_pred cHHHHHHHHHHHHHHcCCCeEEEecCCCCccChHHHHHhCCCcEeeccccHHHHHHHHHHHHhCC-CeeEEEec--HhhH
Q 004968 402 TYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGG-LKPFCIIP--SAFL 478 (721)
Q Consensus 402 ~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~G-~~p~~~ty--s~Fl 478 (721)
....++.+++.++.-..++.+++ .|++....+..+.+ +. .+... =..++.+|.|+.++. -++++++. .+|+
T Consensus 18 ~i~~~~~~a~~~l~~~p~d~ivv-sdiG~~~~~~~~~~--~~-~~~~~--mG~alp~AiGaklA~pd~~VVai~GDG~~~ 91 (280)
T PRK11869 18 GIRNALMKALSELNLKPRQVVIV-SGIGQAAKMPHYIN--VN-GFHTL--HGRAIPAATAVKATNPELTVIAEGGDGDMY 91 (280)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEE-eCchHhhhHHHHcc--CC-CCCcc--cccHHHHHHHHHHHCCCCcEEEEECchHHh
Confidence 34567777776553333444444 45553322222211 11 11111 123566777777775 46777774 5555
Q ss_pred HHHHHHHHHHhhcCCcceEEEEcCCCCcCCCC----CC--------------cCcHHHHHHHccCCCcEEEe---eCCHH
Q 004968 479 QRAYDQVVNDVDQQRLPVRFVITSAGLVGSDG----PT--------------QCGAFDITFMSCLPNMIVMA---PSDED 537 (721)
Q Consensus 479 ~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG----~T--------------H~~~~dia~~~~iPnl~V~~---Psd~~ 537 (721)
.-++..+. .++..++||++++-.-+..|.-| ++ -....|+.-++.--|...++ +.++.
T Consensus 92 ~iG~~eL~-tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~ 170 (280)
T PRK11869 92 AEGGNHLI-HAIRRNPDITVLVHNNQVYGLTKGQASPTTLKGFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIE 170 (280)
T ss_pred hCcHHHHH-HHHHhCcCcEEEEEECHHHhhhcceecCCCCCCcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHH
Confidence 44455553 45678999888873332212111 00 00111222222222444445 99999
Q ss_pred HHHHHHHHHHHhCCCCEEEEe
Q 004968 538 ELVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 538 E~~~~l~~a~~~~~~P~~ir~ 558 (721)
|+...++.|++ .++|++|-.
T Consensus 171 ~l~~~i~~Al~-~~Gp~lIeV 190 (280)
T PRK11869 171 ETKEILKEAIK-HKGLAIVDI 190 (280)
T ss_pred HHHHHHHHHHh-CCCCEEEEE
Confidence 99999999987 588998854
|
|
| >cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins | Back alignment and domain information |
|---|
Probab=84.72 E-value=20 Score=35.73 Aligned_cols=112 Identities=17% Similarity=0.227 Sum_probs=60.5
Q ss_pred CCCcEeeccccHHHHHHHHHHHHhCC-CeeEEEec--HhhHHHHHHHHHHHhhcCCc-ceEEEE-cCCCCcCCCC--CCc
Q 004968 441 FPERYFDVGMAEQHAVTFSAGLACGG-LKPFCIIP--SAFLQRAYDQVVNDVDQQRL-PVRFVI-TSAGLVGSDG--PTQ 513 (721)
Q Consensus 441 fp~R~~d~GIaE~~~v~~AaGlA~~G-~~p~~~ty--s~Fl~ra~dqi~~~~a~~~l-pVv~v~-~~~G~~G~dG--~TH 513 (721)
.|.+|+..|-- -..+..|.|++++. -++++++. ..|+.- ...+ ..++..++ |+++++ ...|. |..+ .+.
T Consensus 40 ~~~~~~~~g~m-G~~lpaAiGaala~p~~~Vv~i~GDG~f~m~-~~eL-~ta~~~~l~~i~ivV~NN~~y-g~~~~~~~~ 115 (188)
T cd03371 40 HAQDFLTVGSM-GHASQIALGIALARPDRKVVCIDGDGAALMH-MGGL-ATIGGLAPANLIHIVLNNGAH-DSVGGQPTV 115 (188)
T ss_pred ccCceeecCcc-ccHHHHHHHHHHhCCCCcEEEEeCCcHHHhh-ccHH-HHHHHcCCCCcEEEEEeCchh-hccCCcCCC
Confidence 34888875221 12456777777653 45666664 555432 2223 34455565 555444 44443 2111 111
Q ss_pred CcHHHH-HHHccCCCcEE-EeeCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004968 514 CGAFDI-TFMSCLPNMIV-MAPSDEDELVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 514 ~~~~di-a~~~~iPnl~V-~~Psd~~E~~~~l~~a~~~~~~P~~ir~ 558 (721)
....|. .+...+ |+.- ....++.|+...+..+++ .++|++|..
T Consensus 116 ~~~~d~~~~A~a~-G~~~~~~v~~~~el~~al~~a~~-~~~p~lIev 160 (188)
T cd03371 116 SFDVSLPAIAKAC-GYRAVYEVPSLEELVAALAKALA-ADGPAFIEV 160 (188)
T ss_pred CCCCCHHHHHHHc-CCceEEecCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 111222 233333 4543 456799999999999976 578998755
|
PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors. |
| >PRK09259 putative oxalyl-CoA decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=84.61 E-value=5.7 Score=46.69 Aligned_cols=117 Identities=12% Similarity=0.080 Sum_probs=80.3
Q ss_pred CcEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHH
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFD 518 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d 518 (721)
=|++.+ -.|++++.+|.|.|.. |...+|. ++.+.+..++.-| ..+...+.||+++...... .+..-.++|....
T Consensus 48 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~ 125 (569)
T PRK09259 48 IRYIGF-RHEQSAGNAAAAAGFLTQKPGVCLTVSAPGFLNGLTAL-ANATTNCFPMIMISGSSEREIVDLQQGDYEELDQ 125 (569)
T ss_pred CCEEee-CCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHH-HHHHhcCCCEEEEEccCCcccccccCCCccccch
Confidence 377776 8999999999999998 5444444 4778877777665 5666789999988643221 1111124666666
Q ss_pred HHHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 519 ITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 519 ia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
..+++.+-.+ .+...++.++...+..|+.. ..+|++|-+|+..
T Consensus 126 ~~~~~~~tk~-s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 172 (569)
T PRK09259 126 LNAAKPFCKA-AFRVNRAEDIGIGVARAIRTAVSGRPGGVYLDLPAKV 172 (569)
T ss_pred hhhhhhheee-eEEcCCHHHHHHHHHHHHHHhhhCCCCcEEEEeCHHH
Confidence 6777766544 34556788888877777763 3578999998764
|
|
| >cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates | Back alignment and domain information |
|---|
Probab=84.37 E-value=6.8 Score=41.07 Aligned_cols=102 Identities=13% Similarity=0.264 Sum_probs=61.6
Q ss_pred HHHHHHHHHhC------CCeeEEEe-cHhhHH-HHHHHHHHHhhcCCcc-eEEEEcCCCCcCCCCCCcC--cHHHH-HHH
Q 004968 455 AVTFSAGLACG------GLKPFCII-PSAFLQ-RAYDQVVNDVDQQRLP-VRFVITSAGLVGSDGPTQC--GAFDI-TFM 522 (721)
Q Consensus 455 ~v~~AaGlA~~------G~~p~~~t-ys~Fl~-ra~dqi~~~~a~~~lp-Vv~v~~~~G~~G~dG~TH~--~~~di-a~~ 522 (721)
.+++|.|+|++ ..+.+|-+ -..|.. ..++.+ ..++..++| ++++++..+. +.+++++. ...|+ .++
T Consensus 110 gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal-~~a~~~~l~~li~vvdnN~~-~~~~~~~~~~~~~~~~~~~ 187 (255)
T cd02012 110 GLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAA-SFAGHYKLDNLIAIVDSNRI-QIDGPTDDILFTEDLAKKF 187 (255)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHH-HHHHHcCCCcEEEEEECCCc-cccCcHhhccCchhHHHHH
Confidence 34566666664 34444444 344432 245544 456777886 6666666664 44455422 22332 334
Q ss_pred ccCCCcEEEeeC--CHHHHHHHHHHHHHhCCCCEEEEec
Q 004968 523 SCLPNMIVMAPS--DEDELVDMVATVASIDDRPVCFRYP 559 (721)
Q Consensus 523 ~~iPnl~V~~Ps--d~~E~~~~l~~a~~~~~~P~~ir~~ 559 (721)
+.+ |+.++.-. |..++...+..+.+..++|++|...
T Consensus 188 ~a~-G~~~~~v~G~d~~~l~~al~~a~~~~~~P~~I~~~ 225 (255)
T cd02012 188 EAF-GWNVIEVDGHDVEEILAALEEAKKSKGKPTLIIAK 225 (255)
T ss_pred HHc-CCeEEEECCCCHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 444 78887777 9999999999987543789988654
|
In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity. |
| >cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC) | Back alignment and domain information |
|---|
Probab=84.36 E-value=3.8 Score=40.14 Aligned_cols=115 Identities=16% Similarity=0.212 Sum_probs=63.9
Q ss_pred hCCCcEeeccccHH-HHHHHHHHHHhCC-CeeEEEec--HhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCC-------
Q 004968 440 KFPERYFDVGMAEQ-HAVTFSAGLACGG-LKPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGS------- 508 (721)
Q Consensus 440 ~fp~R~~d~GIaE~-~~v~~AaGlA~~G-~~p~~~ty--s~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~------- 508 (721)
+.|.+|+..+-.=. ..+..|.|++++- -++++++. ..|+.-. ..+ ..+...++|+++++-..+..+.
T Consensus 38 ~~~~~~~~~~~g~mG~~lp~aiGaala~~~~~vv~i~GDG~f~~~~-~el-~ta~~~~~p~~~iV~nN~~~~~~~~~~~~ 115 (178)
T cd02002 38 TRPGSYFTLRGGGLGWGLPAAVGAALANPDRKVVAIIGDGSFMYTI-QAL-WTAARYGLPVTVVILNNRGYGALRSFLKR 115 (178)
T ss_pred CCCCCeeccCCccccchHHHHHHHHhcCCCCeEEEEEcCchhhccH-HHH-HHHHHhCCCeEEEEEcCccHHHHHHHHHH
Confidence 45788887633111 2345677777663 35566554 5565322 223 3455669998887743332110
Q ss_pred ---C--------CC-CcCcHHHHH-HHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004968 509 ---D--------GP-TQCGAFDIT-FMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 509 ---d--------G~-TH~~~~dia-~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~ 558 (721)
+ +. ......|+. +.... |+..+.-.+++|+...++.+++ .++|++|-.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~-~~~p~vi~v 176 (178)
T cd02002 116 VGPEGPGENAPDGLDLLDPGIDFAAIAKAF-GVEAERVETPEELDEALREALA-EGGPALIEV 176 (178)
T ss_pred HcCCCcccccccccccCCCCCCHHHHHHHc-CCceEEeCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 0 00 001112222 23332 5666677889999999999976 678988743
|
P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors. |
| >cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor | Back alignment and domain information |
|---|
Probab=84.22 E-value=4.1 Score=39.16 Aligned_cols=113 Identities=16% Similarity=0.170 Sum_probs=64.3
Q ss_pred CCcEeecccc--HHHHHHHHHHHHhCC-CeeEEEe--cHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCC-----
Q 004968 442 PERYFDVGMA--EQHAVTFSAGLACGG-LKPFCII--PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGP----- 511 (721)
Q Consensus 442 p~R~~d~GIa--E~~~v~~AaGlA~~G-~~p~~~t--ys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~----- 511 (721)
|.+++..+.. =-..++.|.|+++.. -++++++ -..|+. .+..+ ..+...++|+++++..-+..+..+.
T Consensus 36 ~~~~~~~~~~g~~G~~~~~a~Gaa~a~~~~~vv~~~GDG~~~~-~~~~l-~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~ 113 (168)
T cd00568 36 GRRFLTSTGFGAMGYGLPAAIGAALAAPDRPVVCIAGDGGFMM-TGQEL-ATAVRYGLPVIVVVFNNGGYGTIRMHQEAF 113 (168)
T ss_pred CCcEEeCCCchhhhhhHHHHHHHHHhCCCCcEEEEEcCcHHhc-cHHHH-HHHHHcCCCcEEEEEECCccHHHHHHHHHH
Confidence 4555543322 123445677777664 3445554 355654 44444 3456778998888754443221110
Q ss_pred -------CcCcHHHHH-HHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004968 512 -------TQCGAFDIT-FMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 512 -------TH~~~~dia-~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~ 558 (721)
......|+. +... -|+......++.|+...++.++. .++|++|..
T Consensus 114 ~~~~~~~~~~~~~d~~~~a~~-~G~~~~~v~~~~~l~~a~~~a~~-~~~p~~i~v 166 (168)
T cd00568 114 YGGRVSGTDLSNPDFAALAEA-YGAKGVRVEDPEDLEAALAEALA-AGGPALIEV 166 (168)
T ss_pred cCCCcccccCCCCCHHHHHHH-CCCeEEEECCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 111112222 3333 36777788889999999999974 688988754
|
These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes. |
| >cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit | Back alignment and domain information |
|---|
Probab=83.93 E-value=6.1 Score=38.97 Aligned_cols=100 Identities=13% Similarity=0.173 Sum_probs=52.1
Q ss_pred HHHHHHHHhCC-CeeEEEec--HhhHHHHHHHHHHHhhcCCcceEEEE-cCCCCcCCCCCC-----------cCcHHHHH
Q 004968 456 VTFSAGLACGG-LKPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVI-TSAGLVGSDGPT-----------QCGAFDIT 520 (721)
Q Consensus 456 v~~AaGlA~~G-~~p~~~ty--s~Fl~ra~dqi~~~~a~~~lpVv~v~-~~~G~~G~dG~T-----------H~~~~dia 520 (721)
+..|.|++++. -++++++. ..|+.-++..+ ..+...++|+++++ +..++ |..+.+ .....|+.
T Consensus 57 l~~AiGa~la~p~~~Vv~i~GDG~f~~~g~~eL-~ta~~~~l~i~vvV~nN~~~-g~~~~~~~~~~~~~~~~~~~~~d~~ 134 (178)
T cd02008 57 IGVAIGMAKASEDKKVVAVIGDSTFFHSGILGL-INAVYNKANITVVILDNRTT-AMTGGQPHPGTGKTLTEPTTVIDIE 134 (178)
T ss_pred HHHHhhHHhhCCCCCEEEEecChHHhhccHHHH-HHHHHcCCCEEEEEECCcce-eccCCCCCCCCcccccCCCCccCHH
Confidence 34666666653 45666664 56654433334 34567799987776 33332 221111 01111222
Q ss_pred -HHcc--CCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004968 521 -FMSC--LPNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 521 -~~~~--iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~ 558 (721)
+.+. ++...|..|.+.+++...++.|++ .++|++|..
T Consensus 135 ~~a~a~G~~~~~v~~~~~l~~~~~al~~a~~-~~gp~lI~v 174 (178)
T cd02008 135 ALVRAIGVKRVVVVDPYDLKAIREELKEALA-VPGVSVIIA 174 (178)
T ss_pred HHHHHCCCCEEEecCccCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 2222 233344444555555588888875 688998754
|
IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA. |
| >cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins | Back alignment and domain information |
|---|
Probab=83.89 E-value=5.8 Score=38.31 Aligned_cols=50 Identities=14% Similarity=0.234 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHH-HhhhcCCCEEEEEECCCC
Q 004968 197 SVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMS-NAGYLDSNMIVILNDSRH 254 (721)
Q Consensus 197 ~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn-~A~~~~~plivIv~dN~~ 254 (721)
.++.|.|+|+. | .+++++.. ..+. ...++.+. .++.++.|++++...-+.
T Consensus 51 ~vg~A~GlA~~----G-~~pi~~~~--~~f~-~ra~dqi~~~~a~~~~pv~~~~~~~g~ 101 (156)
T cd07033 51 MVGIAAGLALH----G-LKPFVSTF--SFFL-QRAYDQIRHDVALQNLPVKFVGTHAGI 101 (156)
T ss_pred HHHHHHHHHHC----C-CeEEEEEC--HHHH-HHHHHHHHHHHhccCCCeEEEEECCcE
Confidence 45566677653 4 45555555 4443 47888888 888888999999987654
|
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included |
| >cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=83.80 E-value=6.1 Score=37.34 Aligned_cols=51 Identities=20% Similarity=0.268 Sum_probs=35.1
Q ss_pred chHHHHHHHHHHHHHcCCCCeEEEEE-cCCCcccchHHHHHHHhhhcCCCEEEEEECCCC
Q 004968 196 NSVSAGLGMAVARDIKGKRECIVTVI-SNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRH 254 (721)
Q Consensus 196 ~~is~A~G~AlA~~l~g~~~~Vvavi-GDGal~~G~~~Ealn~A~~~~~plivIv~dN~~ 254 (721)
.+..+|.|++.+ +. ..++.+. |-|.. -..+++-.|...+.|+++|.-+.+.
T Consensus 46 ~a~~~A~G~a~~----~~-~~v~~~~~gpg~~---~~~~~l~~a~~~~~Pvl~i~~~~~~ 97 (154)
T cd06586 46 GAAGAAAGYARA----GG-PPVVIVTSGTGLL---NAINGLADAAAEHLPVVFLIGARGI 97 (154)
T ss_pred HHHHHHHHHHHh----hC-CEEEEEcCCCcHH---HHHHHHHHHHhcCCCEEEEeCCCCh
Confidence 455667777665 33 4444444 78766 4668888888888999999977654
|
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca |
| >cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family | Back alignment and domain information |
|---|
Probab=83.45 E-value=11 Score=39.78 Aligned_cols=64 Identities=13% Similarity=0.088 Sum_probs=45.3
Q ss_pred CcCCCcchHHHHHHHHHHHH--H-cCC--C--CeEEEEEcCCC--cccchHHHHHHHhhhcCCCEEEEEECCC
Q 004968 190 NAGHGCNSVSAGLGMAVARD--I-KGK--R--ECIVTVISNGT--TMAGQAYEAMSNAGYLDSNMIVILNDSR 253 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~--l-~g~--~--~~VvaviGDGa--l~~G~~~Ealn~A~~~~~plivIv~dN~ 253 (721)
..+.-||.++.++-.|+..= . .+. . .+++.++.||. .++|..-+.+..|...+..++||+.||.
T Consensus 133 ~f~~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~ 205 (266)
T cd01460 133 TFQQDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNP 205 (266)
T ss_pred cCCCCCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCC
Confidence 33445677777776665421 1 011 1 28999999999 8889988888888888888888888775
|
The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function. |
| >PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=83.27 E-value=12 Score=40.37 Aligned_cols=102 Identities=11% Similarity=0.203 Sum_probs=60.8
Q ss_pred HHHHHHHHHhCC-CeeEEEec--HhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCC----Cc----------C---
Q 004968 455 AVTFSAGLACGG-LKPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGP----TQ----------C--- 514 (721)
Q Consensus 455 ~v~~AaGlA~~G-~~p~~~ty--s~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~----TH----------~--- 514 (721)
++.+|.|++++. -++++++. .+|+......+.+ ++..++|+++++-.-+..|.-+. |. .
T Consensus 75 alpaAiGaklA~pd~~VV~i~GDG~~~~mg~~eL~t-A~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~~~~~~~~g~~ 153 (301)
T PRK05778 75 AIAFATGAKLANPDLEVIVVGGDGDLASIGGGHFIH-AGRRNIDITVIVENNGIYGLTKGQASPTTPEGSKTKTAPYGNI 153 (301)
T ss_pred HHHHHHHHHHHCCCCcEEEEeCccHHHhccHHHHHH-HHHHCCCcEEEEEeCchhhcccCcccCCcCCCcccccccCCCc
Confidence 556777877763 46666664 5554455555544 46789998887743333221111 10 0
Q ss_pred -cHHHHHHHccCCCcEEE---eeCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004968 515 -GAFDITFMSCLPNMIVM---APSDEDELVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 515 -~~~dia~~~~iPnl~V~---~Psd~~E~~~~l~~a~~~~~~P~~ir~ 558 (721)
...|+.-++.--|...+ ...++.|+..+++.|+. .++|++|-.
T Consensus 154 ~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A~~-~~GpalIeV 200 (301)
T PRK05778 154 EPPIDPCALALAAGATFVARSFAGDVKQLVELIKKAIS-HKGFAFIDV 200 (301)
T ss_pred CCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 11233333322344443 68999999999999986 688998754
|
|
| >COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=82.96 E-value=6.6 Score=43.19 Aligned_cols=115 Identities=19% Similarity=0.158 Sum_probs=68.7
Q ss_pred CCCcEeeccccHHHHHHHHHHHHhCCCee-EE-EecHhhH--HHHHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCc-C
Q 004968 441 FPERYFDVGMAEQHAVTFSAGLACGGLKP-FC-IIPSAFL--QRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQ-C 514 (721)
Q Consensus 441 fp~R~~d~GIaE~~~v~~AaGlA~~G~~p-~~-~tys~Fl--~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH-~ 514 (721)
+..-..-+|=.=-+++|+|-++-+.|-.. |+ ++|.+.- |=.+-.-+|.++..++||||++-.-+. .+ -|.. |
T Consensus 131 ~~~~~~iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEalN~A~v~klPvvf~ieNN~yAiS--vp~~~q 208 (358)
T COG1071 131 FLGGSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENNQYAIS--VPRSRQ 208 (358)
T ss_pred cCCCCceecccccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHHHHHHHHhcCCEEEEEecCCceee--cchhhc
Confidence 33333334444446666666666667333 44 4454432 222222347899999999999966554 23 2222 3
Q ss_pred cHHHHH----HHccCCCcEEEeeCCHHHHHHHHHHHHHh---CCCCEEEEe
Q 004968 515 GAFDIT----FMSCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRY 558 (721)
Q Consensus 515 ~~~dia----~~~~iPnl~V~~Psd~~E~~~~l~~a~~~---~~~P~~ir~ 558 (721)
...++. ..-.||++.| -=.|...++...+.|.++ .++|++|..
T Consensus 209 ~~~~~~~~ra~aygipgv~V-DG~D~~avy~~~~~A~e~AR~g~GPtLIE~ 258 (358)
T COG1071 209 TAAEIIAARAAAYGIPGVRV-DGNDVLAVYEAAKEAVERARAGEGPTLIEA 258 (358)
T ss_pred ccchhHHhhhhccCCCeEEE-CCcCHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 333322 2336899988 788888888888888763 457998843
|
|
| >PRK08327 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=82.50 E-value=7.7 Score=45.64 Aligned_cols=116 Identities=16% Similarity=0.113 Sum_probs=78.1
Q ss_pred cEeeccccHHHHHHHHHHHHhCCCe-eEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCC----C--CCc
Q 004968 444 RYFDVGMAEQHAVTFSAGLACGGLK-PFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSD----G--PTQ 513 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~G~~-p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~d----G--~TH 513 (721)
|++.+ --|++++.+|-|.|...-+ .+|. ++.+.+..++.-| ..+...+.||+++...... .+.. - -.+
T Consensus 52 ~~V~~-rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~N~~~gl-a~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~ 129 (569)
T PRK08327 52 EFVIC-PHEIVAISMAHGYALVTGKPQAVMVHVDVGTANALGGV-HNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWT 129 (569)
T ss_pred cEEec-CCHHHHHHHHHHHHHhhCCCeEEEEecCHHHHHHHHHH-HHHhhcCCCEEEEeccCCccccccccccccCcccc
Confidence 77776 7899999999999998433 4433 4888888777766 4556779999988743222 1111 0 123
Q ss_pred Cc-HHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 514 CG-AFDITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 514 ~~-~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
|. .....+++.+-.+ .+...+++++...+..|+.. ..+|++|.+|...
T Consensus 130 qe~~d~~~~~~~vtk~-~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~i~iP~Dv 182 (569)
T PRK08327 130 QEMRDQGGLVREYVKW-DYEIRRGDQIGEVVARAIQIAMSEPKGPVYLTLPREV 182 (569)
T ss_pred hhhhhHHHHHhhhhhh-hcccCCHHHHHHHHHHHHHHHhcCCCCCEEEECcHHH
Confidence 44 3555677755443 45667888888888877763 3579999998653
|
|
| >cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions | Back alignment and domain information |
|---|
Probab=81.66 E-value=5.1 Score=33.09 Aligned_cols=65 Identities=15% Similarity=0.196 Sum_probs=44.3
Q ss_pred cEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHh-ccCCeEEEEcCCCCCChHH
Q 004968 589 DVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELC-QNHTFLITVEEGSIGGFGS 655 (721)
Q Consensus 589 dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~-~~~~~vvvvEe~~~gG~gs 655 (721)
+|+|.+. +....|.+|.+.|++.||+.+.+|+..-.+. .+.+.+.. ..+-++|++.+...||+-.
T Consensus 2 ~v~ly~~-~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~-~~el~~~~g~~~vP~v~i~~~~iGg~~~ 67 (73)
T cd03027 2 RVTIYSR-LGCEDCTAVRLFLREKGLPYVEINIDIFPER-KAELEERTGSSVVPQIFFNEKLVGGLTD 67 (73)
T ss_pred EEEEEec-CCChhHHHHHHHHHHCCCceEEEECCCCHHH-HHHHHHHhCCCCcCEEEECCEEEeCHHH
Confidence 4666665 4557899999999999999999999753332 23344432 2334667777767898764
|
GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions. |
| >PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor | Back alignment and domain information |
|---|
Probab=80.72 E-value=3.1 Score=39.83 Aligned_cols=113 Identities=18% Similarity=0.268 Sum_probs=65.6
Q ss_pred hCCCcEeec--cccHHHHHHHHHHHHhCC-CeeEEEe--cHhhHHHHHHHHHHHhhcCCcceEEEE-cCCCC--cC----
Q 004968 440 KFPERYFDV--GMAEQHAVTFSAGLACGG-LKPFCII--PSAFLQRAYDQVVNDVDQQRLPVRFVI-TSAGL--VG---- 507 (721)
Q Consensus 440 ~fp~R~~d~--GIaE~~~v~~AaGlA~~G-~~p~~~t--ys~Fl~ra~dqi~~~~a~~~lpVv~v~-~~~G~--~G---- 507 (721)
..|.||+.. .-+=..++++|.|++++. -++++++ -.+|+.- ...+ ..+...++|+++++ +..+. .+
T Consensus 16 ~~p~~~~~~~~~g~mG~~~~~aiGa~~a~p~~~vv~i~GDG~f~~~-~~el-~ta~~~~~~v~~vv~nN~~~~~~~~~~~ 93 (153)
T PF02775_consen 16 RRPRRFLTSGGFGSMGYALPAAIGAALARPDRPVVAITGDGSFLMS-LQEL-ATAVRYGLPVVIVVLNNGGYGMTGGQQT 93 (153)
T ss_dssp SSTTEEEESTTTT-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHH-GGGH-HHHHHTTSSEEEEEEESSBSHHHHHHHH
T ss_pred CCCCeEEcCCCccccCCHHHhhhHHHhhcCcceeEEecCCcceeec-cchh-HHHhhccceEEEEEEeCCcceEeccccc
Confidence 347888873 334455667778887763 4555555 4666654 3233 34566788988777 33333 10
Q ss_pred CCCC----------CcCcHHHHHHHccCCCcEEEeeCCH--HHHHHHHHHHHHhCCCCEEEE
Q 004968 508 SDGP----------TQCGAFDITFMSCLPNMIVMAPSDE--DELVDMVATVASIDDRPVCFR 557 (721)
Q Consensus 508 ~dG~----------TH~~~~dia~~~~iPnl~V~~Psd~--~E~~~~l~~a~~~~~~P~~ir 557 (721)
..+. .|...+. .+.+.+ |+..+.-.++ +|+...+++|++ .++|++|-
T Consensus 94 ~~~~~~~~~~~~~~~~~~d~~-~~a~a~-G~~~~~v~~~~~~el~~al~~a~~-~~gp~vIe 152 (153)
T PF02775_consen 94 PFGGGRFSGVDGKTFPNPDFA-ALAEAF-GIKGARVTTPDPEELEEALREALE-SGGPAVIE 152 (153)
T ss_dssp HTTSTCHHSTBTTTSTTCGHH-HHHHHT-TSEEEEESCHSHHHHHHHHHHHHH-SSSEEEEE
T ss_pred cCcCcccccccccccccCCHH-HHHHHc-CCcEEEEccCCHHHHHHHHHHHHh-CCCcEEEE
Confidence 0111 1122222 333433 6666664555 999999999985 78999873
|
It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A .... |
| >cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins | Back alignment and domain information |
|---|
Probab=80.44 E-value=5.8 Score=34.52 Aligned_cols=67 Identities=21% Similarity=0.175 Sum_probs=47.7
Q ss_pred CCcEEEEEec----hhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhc----cCCeEEEEcCCCCCChHHHH
Q 004968 587 GKDVALLGYG----AMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQ----NHTFLITVEEGSIGGFGSHV 657 (721)
Q Consensus 587 G~dv~Iva~G----s~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~----~~~~vvvvEe~~~gG~gs~v 657 (721)
..+|+|++.| +....|..|.+.|++.|++.+.+|+.. |.+...++.+ .+=+.|++.....||+....
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~----~~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l~ 81 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILE----DEEVRQGLKEYSNWPTFPQLYVNGELVGGCDIVK 81 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCC----CHHHHHHHHHHhCCCCCCEEEECCEEEeCHHHHH
Confidence 4689999998 467899999999999999999999753 3333233322 23356677765689987543
|
The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 721 | ||||
| 2o1s_A | 621 | 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From | 1e-112 | ||
| 2o1x_A | 629 | 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From | 1e-97 | ||
| 3mos_A | 616 | The Structure Of Human Transketolase Length = 616 | 7e-17 | ||
| 3ooy_A | 616 | Crystal Structure Of Human Transketolase (Tkt) Leng | 8e-17 | ||
| 1ik6_A | 369 | 3d Structure Of The E1beta Subunit Of Pyruvate Dehy | 1e-12 | ||
| 2ozl_B | 341 | Human Pyruvate Dehydrogenase S264e Variant Length = | 7e-12 | ||
| 3exe_B | 329 | Crystal Structure Of The Pyruvate Dehydrogenase (E1 | 2e-11 | ||
| 1w85_B | 324 | The Crystal Structure Of Pyruvate Dehydrogenase E1 | 4e-09 | ||
| 3duf_B | 325 | Snapshots Of Catalysis In The E1 Subunit Of The Pyr | 5e-09 | ||
| 1ni4_B | 341 | Human Pyruvate Dehydrogenase Length = 341 | 2e-08 | ||
| 1um9_B | 324 | Branched-chain 2-oxo Acid Dehydrogenase (e1) From T | 3e-08 | ||
| 3hyl_A | 690 | Crystal Structure Of Transketolase From Bacillus An | 8e-06 | ||
| 2bp7_B | 339 | New Crystal Form Of The Pseudomonas Putida Branched | 6e-05 | ||
| 1qs0_B | 338 | Crystal Structure Of Pseudomonas Putida 2-Oxoisoval | 4e-04 |
| >pdb|2O1S|A Chain A, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From Escherichia Coli Length = 621 | Back alignment and structure |
|
| >pdb|2O1X|A Chain A, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From Deinococcus Radiodurans Length = 629 | Back alignment and structure |
|
| >pdb|3MOS|A Chain A, The Structure Of Human Transketolase Length = 616 | Back alignment and structure |
|
| >pdb|3OOY|A Chain A, Crystal Structure Of Human Transketolase (Tkt) Length = 616 | Back alignment and structure |
|
| >pdb|1IK6|A Chain A, 3d Structure Of The E1beta Subunit Of Pyruvate Dehydrogenase From The Archeon Pyrobaculum Aerophilum Length = 369 | Back alignment and structure |
|
| >pdb|2OZL|B Chain B, Human Pyruvate Dehydrogenase S264e Variant Length = 341 | Back alignment and structure |
|
| >pdb|3EXE|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 329 | Back alignment and structure |
|
| >pdb|1W85|B Chain B, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound To The Peripheral Subunit Binding Domain Of E2 Length = 324 | Back alignment and structure |
|
| >pdb|3DUF|B Chain B, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 325 | Back alignment and structure |
|
| >pdb|1NI4|B Chain B, Human Pyruvate Dehydrogenase Length = 341 | Back alignment and structure |
|
| >pdb|1UM9|B Chain B, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus Thermophilus Hb8 In Apo-form Length = 324 | Back alignment and structure |
|
| >pdb|3HYL|A Chain A, Crystal Structure Of Transketolase From Bacillus Anthracis Length = 690 | Back alignment and structure |
|
| >pdb|2BP7|B Chain B, New Crystal Form Of The Pseudomonas Putida Branched-Chain Dehydrogenase (E1) Length = 339 | Back alignment and structure |
|
| >pdb|1QS0|B Chain B, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate Dehydrogenase (Branched-Chain Alpha-Keto Acid Dehydrogenase, E1b) Length = 338 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} Length = 621 | Back alignment and structure |
|---|
Score = 837 bits (2166), Expect = 0.0
Identities = 254/646 (39%), Positives = 361/646 (55%), Gaps = 38/646 (5%)
Query: 75 DKEPTPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVAL 134
D P L LV++ L+ L + L +L E+R L VS++ S L VELTVAL
Sbjct: 4 DIAKYPTLALVDSTQELRLLPKESLPKLCDELRRYLLDSVSRSSGHFASGLGTVELTVAL 63
Query: 135 HHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHG 194
H+V++ P D+++WDVG Q Y HKILTGRR I T+R+K G+ + R ESEYD + GH
Sbjct: 64 HYVYNTPFDQLIWDVGHQAYPHKILTGRRDKIGTIRQKGGLHPFPWRGESEYDVLSVGHS 123
Query: 195 CNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRH 254
S+SAG+G+AVA + +GK V VI +G AG A+EAM++AG + +M+VILND+
Sbjct: 124 STSISAGIGIAVAAEKEGKNRRTVCVIGDGAITAGMAFEAMNHAGDIRPDMLVILNDNEM 183
Query: 255 SLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYAR 314
S+ ++ AL++ L+++ S K + LRE K + + + E + +E+ +
Sbjct: 184 SISE--------NVGALNNHLAQLLSGKLYSSLREGGKKVFSGVP-PIKELLKRTEEHIK 234
Query: 315 GMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENR---R 371
GM+ P TLFEELG YIGPVDGH++ LI+ L+ + L GP +H++T++ R
Sbjct: 235 GMVVP--GTLFEELGFNYIGPVDGHDVLGLITTLKNMRDLK--GPQFLHIMTKKGRGYEP 290
Query: 372 AE-DTQKSEAIEK----QQEGASDSNSLPFGNYSRTYDDCFIEALVMEAEKDKDIVVVHA 426
AE D A+ K S LP +Y F + L A KD ++ +
Sbjct: 291 AEKDPITFHAVPKFDPSSGCLPKSSGGLP------SYSKIFGDWLCETAAKDNKLMAITP 344
Query: 427 GMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVV 486
M + F KFP+RYFDV +AEQHAVTF+AGLA GG KP I S FLQRAYDQV+
Sbjct: 345 AMREGSGMVEFSRKFPDRYFDVAIAEQHAVTFAAGLAIGGYKPIVAIYSTFLQRAYDQVL 404
Query: 487 NDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATV 546
+DV Q+LPV F I AG+VG+DG T GAFD++++ C+P M++M PSDE+E M+ T
Sbjct: 405 HDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTG 464
Query: 547 ASIDDRPVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKAR 606
+D P RYPRG V +L + IGKG V G+ +A+L +G ++ K
Sbjct: 465 YHYNDGPSAVRYPRGNAVGVELTPLE--KLPIGKGIVKRRGEKLAILNFGTLMPEAAKVA 522
Query: 607 ALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSI-GGFGSHVSHFIALDG 665
++ T+ D RF KPLD L+ E+ +H L+TVEE +I GG GS V+ +
Sbjct: 523 E-----SLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAGSGVNEVLMAHR 577
Query: 666 LLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 711
V I LPD +I + + A GL + A + L
Sbjct: 578 K---PVPVLNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKIKAWLA 620
|
| >2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} Length = 629 | Back alignment and structure |
|---|
Score = 837 bits (2166), Expect = 0.0
Identities = 219/650 (33%), Positives = 333/650 (51%), Gaps = 33/650 (5%)
Query: 75 DKEPTPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVAL 134
TP+LD + P LK L+ ++L L E+R E+ + S+ L SSL AV++ AL
Sbjct: 6 GTSDTPLLDQIHGPKDLKRLSREQLPALTEELRGEIVRVCSRGGLHLASSLGAVDIITAL 65
Query: 135 HHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHG 194
H+V +P D+IL+DVG Q YAHKILTGRR + ++K+ GISG+T SESE+D GH
Sbjct: 66 HYVLDSPRDRILFDVGHQAYAHKILTGRRDQMADIKKEGGISGFTKVSESEHDAITVGHA 125
Query: 195 CNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRH 254
S++ LGMA+ARD +GK + VI +G+ G A A++ G + M+++LND+
Sbjct: 126 STSLTNALGMALARDAQGKDFHVAAVIGDGSLTGGMALAALNTIGDMGRKMLIVLNDNEM 185
Query: 255 SLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYAR 314
S+ ++ A++ + +Q K F++ K + + + + ++ ++ R
Sbjct: 186 SISE--------NVGAMNKFMRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAKNSTR 237
Query: 315 GMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENR---R 371
P F +G+ Y+GPVDGHN+++L+ +L+ + L GP ++H+VT + +
Sbjct: 238 HFFDPASVNPFAAMGVRYVGPVDGHNVQELVWLLERLVDLD--GPTILHIVTTKGKGLSY 295
Query: 372 AEDTQ-KSEAIEK--QQEGASDSNSLPFGNYSRTYDDCFIEALVMEAEKDKDIVVVHAGM 428
AE K G +S ++ F EA+ A+ D VV M
Sbjct: 296 AEADPIYWHGPAKFDPATGEYVPSSAY------SWSAAFGEAVTEWAKTDPRTFVVTPAM 349
Query: 429 EMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVND 488
L F P RY DVG+AE+ AVT +AG+A G++P I S FLQRAYDQV++D
Sbjct: 350 REGSGLVEFSRVHPHRYLDVGIAEEVAVTTAAGMALQGMRPVVAIYSTFLQRAYDQVLHD 409
Query: 489 VDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVAS 548
V + L V F I AG+VG+DG T G FD++F+ +P + + P D EL M+ A
Sbjct: 410 VAIEHLNVTFCIDRAGIVGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKY-AQ 468
Query: 549 IDDRPVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARAL 608
D P RYPRG + + ++ G+ + L G DV +L G + LKA
Sbjct: 469 THDGPFAIRYPRGNTAQVPAGTWP--DLKWGEWERLKGGDDVVILAGGKALDYALKAAED 526
Query: 609 LSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSI-GGFGSHVSHFIALDGLL 667
L +G V +ARF KPLD +++RE+ LITVE+ ++ GGFG V + L
Sbjct: 527 LPGVG----VVNARFVKPLDEEMLREVGGRARALITVEDNTVVGGFGGAVLEALNSMNLH 582
Query: 668 DSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTREAL 717
R + +PD + EHA+ A AG+ I L +
Sbjct: 583 ---PTVRVLGIPDEFQEHATAESVHARAGIDAPAIRTVLAELGVDVPIEV 629
|
| >3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* Length = 616 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 2e-30
Identities = 71/286 (24%), Positives = 121/286 (42%), Gaps = 34/286 (11%)
Query: 436 LFQEKFPERYFDVGMAEQHAVTFSAGLAC-GGLKPFCIIPSAFLQRAYDQVVNDVDQQRL 494
+F+++ P+R+ + +AEQ+ V+ + G A PFC +AF RA+DQ+ R+
Sbjct: 348 IFKKEHPDRFIECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQI-------RM 400
Query: 495 ------PVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVA 547
+ + G+ +G DGP+Q D+ +P V PSD V A
Sbjct: 401 AAISESNINLCGSHCGVSIGEDGPSQMALEDLAMFRSVPTSTVFYPSDGVATEKAVELAA 460
Query: 548 SIDDRPVCFRYPRGAIVRTDLPGYRG--IPIEIGKGKVLVEGK--DVALLGYGAMVQNCL 603
+ R R + ++G+ KV+++ K V ++G G + L
Sbjct: 461 NTK-GICFIR-----TSRPENAIIYNNNEDFQVGQAKVVLKSKDDQVTVIGAGVTLHEAL 514
Query: 604 KARALLSKLGIDVTVADARFC-KPLDIKLVRELCQNHT-FLITVEEGSI-GGFGSHVSHF 660
A LL K I++ V D F KPLD KL+ + + ++TVE+ GG G VS
Sbjct: 515 AAAELLKKEKINIRVLDP-FTIKPLDRKLILDSARATKGRILTVEDHYYEGGIGEAVSSA 573
Query: 661 IALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATA 706
+ + G+ + + + P + L + G+ IA
Sbjct: 574 VV----GEPGITVTHLAV-NRVPRSGKPAELLKMFGIDRDAIAQAV 614
|
| >2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B Length = 341 | Back alignment and structure |
|---|
Score = 98.0 bits (245), Expect = 2e-22
Identities = 67/294 (22%), Positives = 117/294 (39%), Gaps = 36/294 (12%)
Query: 402 TYDDCFIEALVMEAEKDKDIV-----VVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAV 456
T D + + E E+D+ + V +S L+++ +R D ++E
Sbjct: 16 TVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFA 75
Query: 457 TFSAGLACGGLKPFCIIPSA-FLQRAYDQVVNDV--------DQQRLPVRFVI-TSAGLV 506
+ G A GL+P C + F +A DQV+N Q +P+ V G
Sbjct: 76 GIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPI--VFRGPNGAS 133
Query: 507 GSDGPTQCGAFDITFMSCLPNMIVMAPSD-EDELVDMVA---TVASI-DDRPVCF----- 556
F + C P + V++P + ED A ++I D+ PV
Sbjct: 134 AGVAAQHSQCFAAWYGHC-PGLKVVSPWNSED------AKGLIKSAIRDNNPVVVLENEL 186
Query: 557 RYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDV 616
Y + + I IGK K+ +G + ++ + V +CL+A A+LSK G++
Sbjct: 187 MYGVPFEFPPEAQSKDFL-IPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVEC 245
Query: 617 TVADARFCKPLDIKLVRELCQNHTFLITVEEG-SIGGFGSHVSHFIALDGLLDS 669
V + R +P+D++ + L+TVE G G G+ + I +
Sbjct: 246 EVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNF 299
|
| >1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B* Length = 324 | Back alignment and structure |
|---|
Score = 89.9 bits (224), Expect = 9e-20
Identities = 69/287 (24%), Positives = 112/287 (39%), Gaps = 53/287 (18%)
Query: 409 EALVMEAEKDKDIVV-------------VHAGMEMDLSLQLFQEKF-PERYFDVGMAEQH 454
+AL +E + D ++++ G+ Q +F +R FD +AE
Sbjct: 11 DALRIELKNDPNVLIFGEDVGVNGGVFRATEGL---------QAEFGEDRVFDTPLAESG 61
Query: 455 AVTFSAGLACGGLKPFC-IIPSAFLQRAYDQVVNDV--------DQQRLPVRFVI-TSAG 504
+ GLA G +P I F+ D + + + +P+ I + G
Sbjct: 62 IGGLAIGLALQGFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPI--TIRSPFG 119
Query: 505 LVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI-DDRPVCF------- 556
+ + P + V+ PS + ++ +++I D+ PV F
Sbjct: 120 GGVHTPELHSDSLEGLVAQQ-PGLKVVIPSTPYDAKGLL--ISAIRDNDPVIFLEHLKLY 176
Query: 557 RYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDV 616
R R + Y I IGK + EGKD+ ++ YGAMV LKA A L K GI
Sbjct: 177 RSFRQEV---PEGEY---TIPIGKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISA 230
Query: 617 TVADARFCKPLDIKLVRELCQNHTFLITVEEGSI-GGFGSHVSHFIA 662
V D R +PLDI+ + + I V+E G ++V I
Sbjct: 231 EVVDLRTVQPLDIETIIGSVEKTGRAIVVQEAQRQAGIAANVVAEIN 277
|
| >1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B* Length = 324 | Back alignment and structure |
|---|
Score = 88.7 bits (221), Expect = 2e-19
Identities = 71/285 (24%), Positives = 114/285 (40%), Gaps = 49/285 (17%)
Query: 409 EALVMEAEKDKDIVV-------------VHAGMEMDLSLQLFQEKF-PERYFDVGMAEQH 454
AL E KD +VV V G+ +K+ P+R D ++E
Sbjct: 12 RALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGL---------LQKYGPDRVMDTPLSEAA 62
Query: 455 AVTFSAGLACGGLKPFC-IIPSAFLQRAYDQVVNDV--------DQQRLPVRFVI-TSAG 504
V + G+A GL+P I + ++ +DQ+V+ V Q P+ V+ +G
Sbjct: 63 IVGAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPL--VVRMPSG 120
Query: 505 LVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI-DDRPVCF-----RY 558
G + + F+ + V+A S + ++ A+I D+ PV F Y
Sbjct: 121 GGVRGGHHHSQSPEAHFVHT-AGLKVVAVSTPYDAKGLL--KAAIRDEDPVVFLEPKRLY 177
Query: 559 PRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTV 618
R Y + IGK + EGKD+ L+ YG ++ L+A A L+K G+ V
Sbjct: 178 -RSVKEEVPEEDY---TLPIGKAALRREGKDLTLICYGTVMPEVLQAAAELAKAGVSAEV 233
Query: 619 ADARFCKPLDIKLVRELCQNHTFLITVEEGSI-GGFGSHVSHFIA 662
D R P D + V ++ V + F S V+ IA
Sbjct: 234 LDLRTLMPWDYEAVMNSVAKTGRVVLVSDAPRHASFVSEVAATIA 278
|
| >2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ... Length = 342 | Back alignment and structure |
|---|
Score = 84.1 bits (209), Expect = 1e-17
Identities = 60/246 (24%), Positives = 102/246 (41%), Gaps = 29/246 (11%)
Query: 437 FQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCIIP-SAFLQRAYDQVVNDVDQQR- 493
++K+ +R F+ + EQ V F G+A G I + ++ A+DQ+VN+ + R
Sbjct: 60 LRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRY 119
Query: 494 --------LPVRFVI-TSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVA 544
+ I + G VG + + F C P + V+ P + ++
Sbjct: 120 RSGDLFNCGSL--TIRSPWGCVGHGALYHSQSPEAFFAHC-PGIKVVIPRSPFQAKGLL- 175
Query: 545 TVASI-DDRPVCF-----RYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAM 598
++ I D P F Y R A + Y I + + +V+ EG DV L+ +G
Sbjct: 176 -LSCIEDKNPCIFFEPKILY-RAAAEEVPIEPY---NIPLSQAEVIQEGSDVTLVAWGTQ 230
Query: 599 VQNCLK-ARALLSKLGIDVTVADARFCKPLDIKLVRE-LCQNHTFLITVEEGSIGGFGSH 656
V + A KLG+ V D R P D+ + + + + LI+ E GGF S
Sbjct: 231 VHVIREVASMAKEKLGVSCEVIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASE 290
Query: 657 VSHFIA 662
+S +
Sbjct: 291 ISSTVQ 296
|
| >1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2 Length = 369 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 4e-17
Identities = 76/285 (26%), Positives = 114/285 (40%), Gaps = 52/285 (18%)
Query: 409 EALVMEAEKDKDIVV-------------VHAGMEMDLSLQLFQEKF-PERYFDVGMAEQH 454
AL E E+D+ +VV V G+ E+F PER D + E
Sbjct: 59 MALHEEMERDERVVVLGEDVGKKGGVFLVTEGL---------YERFGPERVIDTPLNEGG 109
Query: 455 AVTFSAGLACGGLKPFC-IIPSAFLQRAYDQVVNDV--------DQQRLPVRFVI-TSAG 504
+ F+ G+A GLKP I F+ D+++N + + P+ V+ T G
Sbjct: 110 ILGFAMGMAMAGLKPVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPL--VVRTPVG 167
Query: 505 LVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI-DDRPVCF-----RY 558
G + + F+ P ++V+ PS ++ A+I D PV F Y
Sbjct: 168 SGTRGGLYHSNSPEAIFVHT-PGLVVVMPSTPYNAKGLL--KAAIRGDDPVVFLEPKILY 224
Query: 559 PRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTV 618
R Y +EIGK +V EG DV L+ YGA+V L+A ++ V V
Sbjct: 225 -RAPREEVPEGDY---VVEIGKARVAREGDDVTLVTYGAVVHKALEA---AERVKASVEV 277
Query: 619 ADARFCKPLDIKLVRELCQNHTFLITVEEGSI-GGFGSHVSHFIA 662
D + PLD V + LI + GG G+ V +A
Sbjct: 278 VDLQTLNPLDFDTVLKSVSKTGRLIIAHDSPKTGGLGAEVRALVA 322
|
| >1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B Length = 338 | Back alignment and structure |
|---|
Score = 79.5 bits (197), Expect = 3e-16
Identities = 61/295 (20%), Positives = 104/295 (35%), Gaps = 56/295 (18%)
Query: 409 EALVMEAEKDKDIVV-------------VHAGMEMDLSLQLFQEKF-PERYFDVGMAEQH 454
A+ + E+D ++VV G+ Q K+ R FD ++E
Sbjct: 13 SAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGL---------QTKYGKSRVFDAPISESG 63
Query: 455 AVTFSAGLACGGLKPFCIIP-SAFLQRAYDQVVNDV------DQQRLPVRFVI-TSAGLV 506
V + G+ GL+P I + + A DQ+V+++ + G
Sbjct: 64 IVGTAVGMGAYGLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGGG 123
Query: 507 GSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI-DDRPVCF-----RYPR 560
G T + + F + + PS+ + ++ +ASI D PV F Y
Sbjct: 124 IYGGQTHSQSPEAMFTQV-CGLRTVMPSNPYDAKGLL--IASIECDDPVIFLEPKRLYNG 180
Query: 561 GAIVRTDLPGYRGI------------PIEIGKGKVLVEGKDVALLGYGAMVQNCLKARAL 608
D P + + K + G DV++L YG V A
Sbjct: 181 PFDGHHDRPVTPWSKHPHSAVPDGYYTVPLDKAAITRPGNDVSVLTYGTTVYVAQVAAE- 239
Query: 609 LSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSI-GGFGSHVSHFIA 662
+ G+D V D R PLD+ + E + + V E + GFG+ + +
Sbjct: 240 --ESGVDAEVIDLRSLWPLDLDTIVESVKKTGRCVVVHEATRTCGFGAELVSLVQ 292
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.3 bits (166), Expect = 7e-12
Identities = 82/628 (13%), Positives = 173/628 (27%), Gaps = 195/628 (31%)
Query: 22 LDQRKIE-FLSSNISRELEISRINLCPSSSS--------ITSSKLVTVSRICALPDIDDF 72
D + ++ S +S+E EI I + + S + S + V + ++
Sbjct: 33 FDCKDVQDMPKSILSKE-EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY 91
Query: 73 FW--------DKEPTPILDLVE---NPL-------------RLKSLTIKELKQLAVEIRS 108
+ ++P+ + + + L RL+ +L+Q +E+R
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ--PYLKLRQALLELRP 149
Query: 109 ELSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILW-DVGEQTYAHKILTGRRSLIH 167
+ ++ S K+ +A + V KI W ++ +L + L++
Sbjct: 150 AKNVLIDGVLGSGKTWVAL--DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207
Query: 168 TLRKK-----DGISGYTSRSESEY----------------------------DPFNAGHG 194
+ D S R S + FN
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN--LS 265
Query: 195 CNSVSAGLGMAVARDIKGKRECIVTVISNGTTM------------AGQAYE--------- 233
C + V + +++ + T+ +
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 234 ---AMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQL--- 287
+S + + ++ +H K+ ++S+N L R K F +L
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR----KMFDRLSVF 381
Query: 288 REVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISV 347
A T + W + ++ + L V+ E IS+
Sbjct: 382 PPSAHIPTILLSL---IWFDVIKSDVMVVV-----NKLHKYSL-----VEKQPKESTISI 428
Query: 348 LQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEK-QQEGASDSNSL---PFGNYSRTY 403
+++ + E ++ DS+ L Y ++
Sbjct: 429 PS------------IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 404 DDCFIEALVMEAEKDKDIVVVH-AGMEMDLSLQLFQEKFPERYFDVGMAEQ---HAVTFS 459
+ H +E + F + D EQ H T
Sbjct: 477 ------------------IGHHLKNIEHP---ERMTL-FRMVFLDFRFLEQKIRHDST-- 512
Query: 460 AGLACGGL----------KPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVIT-SAGLVGS 508
A A G + KP+ I + Y+++VN + + F+ L+ S
Sbjct: 513 AWNASGSILNTLQQLKFYKPY-ICDN---DPKYERLVNAI------LDFLPKIEENLICS 562
Query: 509 DGPTQCGAFDITFMSCLPNMIVMAPSDE 536
+ L + +MA +
Sbjct: 563 K------------YTDLLRIALMAEDEA 578
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 1e-07
Identities = 81/651 (12%), Positives = 173/651 (26%), Gaps = 195/651 (29%)
Query: 135 HHVFHAPVDKILWDVGEQTYAHK--ILTGRRSLIHTLRKKDGISGYTSR--SESEYDP-F 189
HH H +D ++ GE Y +K + + + KD + S+ E D
Sbjct: 2 HH--HHHMD---FETGEHQYQYKDILSVFEDAFVDNFDCKD-VQDMPKSILSKEEIDHII 55
Query: 190 NAGH---------------GCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEA 234
+ V + + + K I T +M + Y
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE-QRQPSMMTRMYIE 114
Query: 235 MSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGM 294
+ Y D+ + N SR + K+ ++ L ++ +K+ + G+
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQA-----------LLELRPAKNV-----LIDGV 158
Query: 295 TKRIGRGMHEWAAKV---DEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEV 351
+G G A V + M + ++++ + ++ E ++ +LQ++
Sbjct: 159 ---LGSGKTWVALDVCLSYKVQCKM----------DFKIFWLNLKNCNSPETVLEMLQKL 205
Query: 352 AS-LGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGASDSNSL-------------PFG 397
+ + R Q + + + N L F
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQ--AELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263
Query: 398 NYSR----TYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQ 453
+ T + L + + D L + R D + +
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD--LPRE 321
Query: 454 HAVTFSAGLACGGLKPF--CIIPSAFLQRA------YDQVVNDVDQQRLPVRFVITSAGL 505
P II ++ + V D
Sbjct: 322 ---------VLTTN-PRRLSIIA-ESIRDGLATWDNWKHVNCD----------------- 353
Query: 506 VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPRGAIVR 565
S L + + E R + R ++
Sbjct: 354 ----------KLTTIIESSLNVL------EPAEY------------RK---MFDRLSVFP 382
Query: 566 TDLPGYRGIPIEIGKGKVL------VEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVA 619
IP +L V DV + +V K +L+ K + T++
Sbjct: 383 PSAH----IPT-----ILLSLIWFDVIKSDVMV-----VVNKLHK-YSLVEKQPKESTIS 427
Query: 620 ----DARFCKPLDI------KLV------RELCQNHTFLITVEEGSIGGFGSHVSHFIAL 663
L+ +V + + ++ F SH+ H +
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD----QYFYSHIGHHLKN 483
Query: 664 DGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTR 714
+ +R + L ++E Q++ T + + + L+ L + +
Sbjct: 484 IEHPERMTLFRMVFLDFRFLE-----QKIRHDS-TAWNASGSILNTLQQLK 528
|
| >2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus} Length = 651 | Back alignment and structure |
|---|
Score = 48.6 bits (117), Expect = 6e-06
Identities = 34/138 (24%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 492 QRLPVRFVIT--SAGLVGSDGPT-----QCGAFDITFMSCLPNMIVMAPSDEDELVDMVA 544
+P FV T S L G DGPT + PN+ V+ P+D E
Sbjct: 446 MGVPTVFVFTHDSIAL-GEDGPTHQPVEHLMSLRAM-----PNLFVIRPADAYETFYAWL 499
Query: 545 TVASIDDRPVCFRYPRGAIVRTDLPGYRGIPIE-IGKGK-VLVEGK--DVALLGYGAMVQ 600
+ P + R +P + +G VL + + L+ G+ V
Sbjct: 500 VALRRKEGPTAL-----VLTRQAVPLLSPEKARGLLRGGYVLEDVEEPQGVLVATGSEVH 554
Query: 601 NCLKARALLSKLGIDVTV 618
L+A+ALL + G+ V V
Sbjct: 555 LALRAQALLREKGVRVRV 572
|
| >3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A* Length = 632 | Back alignment and structure |
|---|
Score = 48.6 bits (117), Expect = 7e-06
Identities = 38/139 (27%), Positives = 51/139 (36%), Gaps = 25/139 (17%)
Query: 492 QRLPVRFVIT--SAGLVGSDGPT-----QCGAFDITFMSCLPNMIVMAPSDEDELVDMVA 544
++ F+ T S G+ G DGPT Q F PN + P+D E V A
Sbjct: 431 MKIKHFFIFTHDSIGV-GEDGPTHQPIEQLSTFRAM-----PNFLTFRPADGVENV--KA 482
Query: 545 -TVASIDDRPVCFRYPRGAIVRTDLPGYRGIPIE-IGKGK-VLVEGK--DVALLGYGAMV 599
+A D P F + R L + G +L E K LL G+ V
Sbjct: 483 WQIALNADIPSAF-----VLSRQKLKALNEPVFGDVKNGAYLLKESKEAKFTLLASGSEV 537
Query: 600 QNCLKARALLSKLGIDVTV 618
CL++ L K G V
Sbjct: 538 WLCLESANELEKQGFACNV 556
|
| >1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A* Length = 680 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 1e-05
Identities = 40/140 (28%), Positives = 56/140 (40%), Gaps = 26/140 (18%)
Query: 492 QRLPVRFVIT--SAGLVGSDGPT-----QCGAFDITFMSCLPNMIVMAPSDEDELVDMVA 544
PV +V T S G+ G DGPT F PN+ V P+D +E+ A
Sbjct: 459 SGHPVIWVATHDSIGV-GEDGPTHQPIETLAHFRSL-----PNIQVWRPADGNEVS--AA 510
Query: 545 TVASI--DDRPVCFRYPRGAIVRTDLPGYRGIPIE-IGKGK-VLVEGK--DVALLGYGAM 598
S+ P A+ R +LP G IE KG VL + D+ L+ G+
Sbjct: 511 YKNSLESKHTPSII-----ALSRQNLPQLEGSSIESASKGGYVLQDVANPDIILVATGSE 565
Query: 599 VQNCLKARALLSKLGIDVTV 618
V ++A L+ I V
Sbjct: 566 VSLSVEAAKTLAAKNIKARV 585
|
| >1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 Length = 675 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 2e-05
Identities = 39/143 (27%), Positives = 60/143 (41%), Gaps = 29/143 (20%)
Query: 492 QRLPVRFVIT--SAGLVGSDGPT-----QCGAFDITFMSCLPNMIVMAPSDEDELVDMVA 544
V +V+T S GL G DGPT +F PN++++ P+D +E A
Sbjct: 464 SEAGVIYVMTHDSIGL-GEDGPTHQPIEHLVSFRAM-----PNILMLRPADGNETA--GA 515
Query: 545 TVASI--DDRPVCFRYPRGAIVRTDLPGYRGIPIE-IGKGK-VLVEGK-----DVALLGY 595
++ RP A+ R LP G IE + KG + + D+ ++G
Sbjct: 516 YKVAVLNRKRPSIL-----ALSRQKLPHLPGTSIEGVEKGGYTISDNSTGNKPDLIVMGT 570
Query: 596 GAMVQNCLKARALLSKLGIDVTV 618
G+ ++ KA L K G V V
Sbjct: 571 GSELEIAAKAADELRKEGKTVRV 593
|
| >3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis} Length = 700 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 8e-05
Identities = 36/146 (24%), Positives = 52/146 (35%), Gaps = 30/146 (20%)
Query: 492 QRLPVRFVIT--SAGLVGSDGPT-----QCGAFDITFMSCLPNMIVMAPSDEDELVD--M 542
+ +V T S GL G DGPT A P + V+ P+D +E
Sbjct: 481 MDIDTIYVWTHDSIGL-GEDGPTHQPIEHLSALRAI-----PRLSVVRPADANETAYAWR 534
Query: 543 VATVASIDDRPVCFRYPRGAIVRTDLPGYRGIPIE-IGKGK-VLVEGK--------DVAL 592
PV + R +P G E + +G VL + DV L
Sbjct: 535 TILARRNGSGPVGL-----ILTRQGVPVLDGTDAEGVARGGYVLSDAGGLQPGEEPDVIL 589
Query: 593 LGYGAMVQNCLKARALLSKLGIDVTV 618
+ G+ VQ + A+ LL+ I V
Sbjct: 590 IATGSEVQLAVAAQTLLADNDILARV 615
|
| >3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A* Length = 690 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 1e-04
Identities = 42/143 (29%), Positives = 62/143 (43%), Gaps = 27/143 (18%)
Query: 492 QRLPVRFVIT--SAGLVGSDGPT-----QCGAFDITFMSCLPNMIVMAPSDEDELVDMVA 544
+LPV +V T S + G DGPT Q A PN+ V+ P+D +E V
Sbjct: 476 MQLPVTYVFTHDSIAV-GEDGPTHEPIEQLAALRAM-----PNVSVIRPADGNESVAAWR 529
Query: 545 TVASIDDRPVCFRYPRGAIVRTDLP---GYRGIPIE-IGKGK-VLVEGK----DVALLGY 595
++P + R DLP G + E + KG V+ K DV LL
Sbjct: 530 LALESTNKPTAL-----VLTRQDLPTLEGAKDDTYEKVAKGAYVVSASKKETADVILLAT 584
Query: 596 GAMVQNCLKARALLSKLGIDVTV 618
G+ V ++A+ L+ G+D +V
Sbjct: 585 GSEVSLAVEAQKALAVDGVDASV 607
|
| >2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A* Length = 669 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 2e-04
Identities = 31/141 (21%), Positives = 48/141 (34%), Gaps = 25/141 (17%)
Query: 492 QRLPVRFVIT--SAGLVGSDGPT-----QCGAFDITFMSCLPNMIVMAPSDEDELVDMVA 544
+ V T S GL G DGPT Q + +T PNM P D+ E
Sbjct: 451 MKQRQVMVYTHDSIGL-GEDGPTHQPVEQVASLRVT-----PNMSTWRPCDQVESAVAWK 504
Query: 545 TVASIDDRPVCFRYPRGAIVRTDLPGYRGIPIEIGK----GKVLVEGK---DVALLGYGA 597
D P + R +L ++ G VL + ++ + G+
Sbjct: 505 YGVERQDGPTAL-----ILSRQNLAQQERTEEQLANIARGGYVLKDCAGQPELIFIATGS 559
Query: 598 MVQNCLKARALLSKLGIDVTV 618
V+ + A L+ G+ V
Sbjct: 560 EVELAVAAYEKLTAEGVKARV 580
|
| >3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp} Length = 663 | Back alignment and structure |
|---|
Score = 43.6 bits (104), Expect = 2e-04
Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 28/142 (19%)
Query: 492 QRLPVRFVIT--SAGLVGSDGPT-----QCGAFDITFMSCLPNMIVMAPSDEDELVDMVA 544
+ PV V++ S GL G DGPT + + PN+ V P+D E + +A
Sbjct: 452 MKQPVVHVMSHDSIGL-GEDGPTHQPIEHVPSLRLI-----PNLSVWRPADTIETM--IA 503
Query: 545 TVASID--DRPVCFRYPRGAIVRTDLPGYRGIPIEIGK----GKVLVE--GKDVALLGYG 596
++ D P + R +L ++ G ++ + + ++ G
Sbjct: 504 WKEAVKSKDTPSVM-----VLTRQNLMPVVQTQHQVANIARGGYLVKDNPDAKLTIVATG 558
Query: 597 AMVQNCLKARALLSKLGIDVTV 618
+ V+ +K K GI + V
Sbjct: 559 SEVELAVKVANEFEKKGIKLNV 580
|
| >1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 Length = 673 | Back alignment and structure |
|---|
Score = 43.2 bits (103), Expect = 3e-04
Identities = 33/140 (23%), Positives = 51/140 (36%), Gaps = 27/140 (19%)
Query: 492 QRLPVRFVIT--SAGLVGSDGPT-----QCGAFDITFMSCLPNMIVMAPSDEDELVDMVA 544
V +V T S G+ G DGPT A PN+ V+ PSD+ E A
Sbjct: 451 SHHRVIYVATHDSIGV-GEDGPTHQPVELVAALRAM-----PNLQVIRPSDQTETS--GA 502
Query: 545 TVASID--DRPVCFRYPRGAIVRTDLPGYRGIPIE-IGKGK-VLVE--GKDVALLGYGAM 598
++ P + R + G IE + G +V+ + ++ G+
Sbjct: 503 WAVALSSIHTPTVL-----CLSRQNTEPQSGSSIEGVRHGAYSVVDVPDLQLVIVASGSE 557
Query: 599 VQNCLKARALLSKLGIDVTV 618
V + A LS + V V
Sbjct: 558 VSLAVDAAKALSG-ELRVRV 576
|
| >3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A* Length = 711 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 6e-04
Identities = 38/145 (26%), Positives = 55/145 (37%), Gaps = 31/145 (21%)
Query: 492 QRLPVRFVIT--SAGLVGSDGPT-----QCGAFDITFMSCLPNMIVMAPSDEDELVDMVA 544
++P FV T S GL G DGPT + + PN+ V P+D E VA
Sbjct: 497 MKVPSIFVFTHDSIGL-GEDGPTHQSVEHVASLRLI-----PNLDVWRPADTVETA--VA 548
Query: 545 -TVASIDDRPVCFRYPRGAIVRTDLPGYRGIPIEIGK----GKVLVEGK------DVALL 593
T A P C R +L ++ G VL + + L+
Sbjct: 549 WTYAVAHQHPSCL-----IFSRQNLAFNARTDAQLANVEKGGYVLRDWDEEIVARKIILI 603
Query: 594 GYGAMVQNCLKARALLSKLGIDVTV 618
G+ V+ +KA L++ GI V
Sbjct: 604 ATGSEVELAMKAVEPLAQQGIAARV 628
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 721 | |||
| 2o1x_A | 629 | 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, | 100.0 | |
| 2o1s_A | 621 | 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia | 100.0 | |
| 3mos_A | 616 | Transketolase, TK; thiamin diphosphate TPP THDP en | 100.0 | |
| 3l84_A | 632 | Transketolase; TKT, structural genomics, center fo | 100.0 | |
| 3m49_A | 690 | Transketolase; alpha-beta-alpha sandwich, csgid, t | 100.0 | |
| 3rim_A | 700 | Transketolase, TK; TPP, transferase; HET: TPP; 2.4 | 100.0 | |
| 3kom_A | 663 | Transketolase; rossmann fold, csgid, transferase, | 100.0 | |
| 1itz_A | 675 | Transketolase; calvin cycle, cofactor, thiamine py | 100.0 | |
| 3uk1_A | 711 | Transketolase; structural genomics, seattle struct | 100.0 | |
| 2e6k_A | 651 | Transketolase; structural genomics, NPPSFA, nation | 100.0 | |
| 2r8o_A | 669 | Transketolase 1, TK 1; reaction intermediate, calc | 100.0 | |
| 1gpu_A | 680 | Transketolase; transferase(ketone residues); HET: | 100.0 | |
| 2qtc_A | 886 | Pyruvate dehydrogenase E1 component; thiamin dipho | 100.0 | |
| 1r9j_A | 673 | Transketolase; domains, EACH of the alpha/beta typ | 100.0 | |
| 3ahc_A | 845 | Phosphoketolase, xylulose 5-phosphate/fructose 6-p | 100.0 | |
| 2jgd_A | 933 | 2-oxoglutarate dehydrogenase E1 component; flavopr | 100.0 | |
| 1ik6_A | 369 | Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, o | 100.0 | |
| 2ozl_B | 341 | PDHE1-B, pyruvate dehydrogenase E1 component subun | 100.0 | |
| 2yic_A | 868 | 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.9 | 100.0 | |
| 1w85_B | 324 | Pyruvate dehydrogenase E1 component, beta subunit; | 100.0 | |
| 1umd_B | 324 | E1-beta, 2-OXO acid dehydrogenase beta subunit; al | 100.0 | |
| 2xt6_A | 1113 | 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET | 100.0 | |
| 2bfd_B | 342 | 2-oxoisovalerate dehydrogenase beta subunit; oxido | 100.0 | |
| 1qs0_B | 338 | 2-oxoisovalerate dehydrogenase beta-subunit; heter | 100.0 | |
| 1umd_A | 367 | E1-alpha, 2-OXO acid dehydrogenase alpha subunit; | 99.96 | |
| 1w85_A | 368 | Pyruvate dehydrogenase E1 component, alpha subunit | 99.93 | |
| 2ozl_A | 365 | PDHE1-A type I, pyruvate dehydrogenase E1 componen | 99.93 | |
| 1yd7_A | 395 | 2-keto acid:ferredoxin oxidoreductase subunit alph | 99.92 | |
| 2bfd_A | 400 | 2-oxoisovalerate dehydrogenase alpha subunit; oxid | 99.91 | |
| 1qs0_A | 407 | 2-oxoisovalerate dehydrogenase alpha-subunit; hete | 99.89 | |
| 2c42_A | 1231 | Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, | 99.79 | |
| 4feg_A | 603 | Pyruvate oxidase; carbanion, structure activity re | 99.63 | |
| 3ju3_A | 118 | Probable 2-oxoacid ferredoxin oxidoreductase, ALP; | 99.6 | |
| 2uz1_A | 563 | Benzaldehyde lyase; thiamine diphosphate, thiamine | 99.56 | |
| 3eya_A | 549 | Pyruvate dehydrogenase [cytochrome]; pyruvate oxid | 99.53 | |
| 1ozh_A | 566 | ALS, acetolactate synthase, catabolic; acetohydrox | 99.53 | |
| 1ybh_A | 590 | Acetolactate synthase, chloroplast; acetohydroxyac | 99.49 | |
| 1t9b_A | 677 | Acetolactate synthase, mitochondrial; acetohydroxy | 99.47 | |
| 2pgn_A | 589 | Cyclohexane-1,2-dione hydrolase (CDH); three alpha | 99.44 | |
| 1v5e_A | 590 | Pyruvate oxidase; oxidoreductase, flavoprotein; HE | 99.42 | |
| 1q6z_A | 528 | BFD, BFDC, benzoylformate decarboxylase; lyase, ca | 99.42 | |
| 2iht_A | 573 | Carboxyethylarginine synthase; thiamin diphosphate | 99.41 | |
| 2vk8_A | 563 | Pyruvate decarboxylase isozyme 1; asymmetric activ | 99.41 | |
| 1ovm_A | 552 | Indole-3-pyruvate decarboxylase; thiamine diphosph | 99.4 | |
| 2pan_A | 616 | Glyoxylate carboligase; thiamin-diphosphate (THDP) | 99.4 | |
| 2vbi_A | 566 | Pyruvate decarboxylase; thiamine pyrophosphate, ly | 99.36 | |
| 2vbf_A | 570 | Branched-chain alpha-ketoacid decarboxylase; KDCA, | 99.34 | |
| 2q28_A | 564 | Oxalyl-COA decarboxylase; lyase, oxalate degradati | 99.34 | |
| 2wvg_A | 568 | PDC, pyruvate decarboxylase; thiamine diphosphate, | 99.33 | |
| 2x7j_A | 604 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene - | 99.33 | |
| 2c31_A | 568 | Oxalyl-COA decarboxylase; oxalate, thiamin diphosp | 99.3 | |
| 2nxw_A | 565 | Phenyl-3-pyruvate decarboxylase; thiamine pyrophos | 99.27 | |
| 3lq1_A | 578 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 99.24 | |
| 3hww_A | 556 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 99.2 | |
| 2c42_A | 1231 | Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, | 98.76 | |
| 1v5e_A | 590 | Pyruvate oxidase; oxidoreductase, flavoprotein; HE | 92.94 | |
| 2uz1_A | 563 | Benzaldehyde lyase; thiamine diphosphate, thiamine | 92.46 | |
| 1ozh_A | 566 | ALS, acetolactate synthase, catabolic; acetohydrox | 92.09 | |
| 1ybh_A | 590 | Acetolactate synthase, chloroplast; acetohydroxyac | 92.07 | |
| 2vbi_A | 566 | Pyruvate decarboxylase; thiamine pyrophosphate, ly | 92.01 | |
| 2wvg_A | 568 | PDC, pyruvate decarboxylase; thiamine diphosphate, | 91.95 | |
| 2pan_A | 616 | Glyoxylate carboligase; thiamin-diphosphate (THDP) | 91.24 | |
| 2nxw_A | 565 | Phenyl-3-pyruvate decarboxylase; thiamine pyrophos | 91.18 | |
| 2iht_A | 573 | Carboxyethylarginine synthase; thiamin diphosphate | 91.04 | |
| 4feg_A | 603 | Pyruvate oxidase; carbanion, structure activity re | 91.03 | |
| 1t9b_A | 677 | Acetolactate synthase, mitochondrial; acetohydroxy | 90.99 | |
| 3eya_A | 549 | Pyruvate dehydrogenase [cytochrome]; pyruvate oxid | 90.75 | |
| 2vbf_A | 570 | Branched-chain alpha-ketoacid decarboxylase; KDCA, | 89.97 | |
| 3hww_A | 556 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 87.72 | |
| 1q6z_A | 528 | BFD, BFDC, benzoylformate decarboxylase; lyase, ca | 87.56 | |
| 2pgn_A | 589 | Cyclohexane-1,2-dione hydrolase (CDH); three alpha | 87.18 | |
| 3lq1_A | 578 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 86.52 | |
| 1ovm_A | 552 | Indole-3-pyruvate decarboxylase; thiamine diphosph | 85.21 | |
| 2x7j_A | 604 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene - | 83.8 | |
| 2vk8_A | 563 | Pyruvate decarboxylase isozyme 1; asymmetric activ | 83.76 | |
| 2c31_A | 568 | Oxalyl-COA decarboxylase; oxalate, thiamin diphosp | 83.53 |
| >2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-116 Score=1021.42 Aligned_cols=614 Identities=35% Similarity=0.552 Sum_probs=532.2
Q ss_pred CCCccccccCCCccccCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHH
Q 004968 76 KEPTPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYA 155 (721)
Q Consensus 76 ~~~~~~l~~i~~p~~~~~~~~~~l~~la~eiR~~~~~~~~~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~ 155 (721)
..++|+|++|++|.|+|+++.++|+++++++|+.+++++++++||+++++|+|+++.+||++|+.|+|+||||+|||+|+
T Consensus 7 ~~~~~~l~~i~~p~d~~~l~~~~l~~l~~~iR~~~~~~~~~~~Gh~~~~lg~v~l~~aL~~~~~~~~D~~v~~~GH~~y~ 86 (629)
T 2o1x_A 7 TSDTPLLDQIHGPKDLKRLSREQLPALTEELRGEIVRVCSRGGLHLASSLGAVDIITALHYVLDSPRDRILFDVGHQAYA 86 (629)
T ss_dssp CCSCTTGGGCSSHHHHTTSCGGGHHHHHHHHHHHHHHHHTTSSSCHHHHHHTHHHHHHHHHHSCTTTSEEEESSSTTCHH
T ss_pred CCCCchhhhCCChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCcCCCchhHHHHHHHHHhhcCCCCCeEEecCchHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred HHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHH
Q 004968 156 HKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAM 235 (721)
Q Consensus 156 h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Eal 235 (721)
|++++|+.+.+.++|+++|++|||++.+|+|+.+++|++|+++|+|+|+|+|+++++++++|||++|||++++||+||+|
T Consensus 87 ~~~l~G~~~~~~~~r~~~g~~G~p~~~~s~~~~~~~G~~G~gl~~AvG~AlA~k~~~~~~~Vv~v~GDG~~~~G~~~EaL 166 (629)
T 2o1x_A 87 HKILTGRRDQMADIKKEGGISGFTKVSESEHDAITVGHASTSLTNALGMALARDAQGKDFHVAAVIGDGSLTGGMALAAL 166 (629)
T ss_dssp HHHTTTTGGGGGGTTSTTSCCSSCCGGGCTTCCSCCSSSSCHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHH
T ss_pred HHHHhCcHhHHhCcccCCCCCCCCCCCCCCCCCcCCCcccccHhHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhc
Q 004968 236 SNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARG 315 (721)
Q Consensus 236 n~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~ 315 (721)
|+|+++++|+++|||||+++ ++++++.++.+++++...+.|..++...+.+.+.+|.++.....++.++++.
T Consensus 167 ~~A~~~~~pli~IvnnN~~~--------i~~~~~~~~~~~~~l~~~~~y~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~ 238 (629)
T 2o1x_A 167 NTIGDMGRKMLIVLNDNEMS--------ISENVGAMNKFMRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAKNSTRH 238 (629)
T ss_dssp HHHHHHCCSEEEEEEECSBS--------SSBCCSSHHHHC----------------------------------------
T ss_pred HHHHhhCCCEEEEEECCCCC--------CCCChhHHHHHHHHHhhchhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHh
Confidence 99999999999999999983 4566777777778877788888888777766655555544444555566665
Q ss_pred ccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccccCCC--CCC
Q 004968 316 MIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGASD--SNS 393 (721)
Q Consensus 316 ~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~~f--~~g 393 (721)
++.|.+..+||+|||++++++||||+++|.++++++++ .++|++||++|.||+||+++|+ ++.+|||.++| .++
T Consensus 239 ~~~p~~~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~--~~~P~lI~v~t~kg~G~~~~e~--~~~~~H~~~~f~~~~~ 314 (629)
T 2o1x_A 239 FFDPASVNPFAAMGVRYVGPVDGHNVQELVWLLERLVD--LDGPTILHIVTTKGKGLSYAEA--DPIYWHGPAKFDPATG 314 (629)
T ss_dssp -----CCCTTGGGTCEEEEEEESSCHHHHHHHHHHHTT--SSSEEEEEEECCTTTTCHHHHH--CTTGGGSCCSBCTTTC
T ss_pred hcCcccchHHHhcCCeEEeeECCcCHHHHHHHHHHHHh--cCCCEEEEEEEecCCCCChhHc--CCcccccCccCCcCcC
Confidence 55443238999999999989999999999999999987 4899999999999999999997 67899999999 555
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHcCCCeEEEecCCCCccChHHHHHhCCCcEeeccccHHHHHHHHHHHHhCCCeeEEEe
Q 004968 394 LPFGNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCII 473 (721)
Q Consensus 394 ~~~~~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~t 473 (721)
...+.+..+|+++|+++|.+++++|++|+++++||++++++..|+++||+||||+||+|++|+++|+|+|++|+|||+++
T Consensus 315 ~~~~~~~~~~~~~~~~~l~~~~~~d~~v~~i~~d~~~~~~~~~f~~~~~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~~~ 394 (629)
T 2o1x_A 315 EYVPSSAYSWSAAFGEAVTEWAKTDPRTFVVTPAMREGSGLVEFSRVHPHRYLDVGIAEEVAVTTAAGMALQGMRPVVAI 394 (629)
T ss_dssp CBCCCCCCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHHHCGGGEEECCSCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cccccchHHHHHHHHHHHHHHhhhCcCEEEEeccccCCcChHHHHHhcCcceEeccccHHHHHHHHHHHHHcCCEEEEEe
Confidence 43222367999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCC
Q 004968 474 PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRP 553 (721)
Q Consensus 474 ys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P 553 (721)
|++|++|++||+++++|++++||+++++++|++|+||+|||+.+|++++|++||++|++|+|++|++.++++|++ .++|
T Consensus 395 ~~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~~g~dG~tH~~~~d~a~~r~iP~l~v~~P~d~~e~~~~~~~a~~-~~~P 473 (629)
T 2o1x_A 395 YSTFLQRAYDQVLHDVAIEHLNVTFCIDRAGIVGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYAQT-HDGP 473 (629)
T ss_dssp EHHHHGGGHHHHHHTTTTTTCCCEEEEESBBCCCTTCTTTCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHHHHH-SSSC
T ss_pred cHHHHHHHHHHHHHHHhhcCCCEEEEEECCccCCCCCcccCccHHHHHHHccCCcEEEecCCHHHHHHHHHHHHh-CCCC
Confidence 999999999999999999999999999999998999999999999999999999999999999999999999997 4899
Q ss_pred EEEEecCCCcccccCCCCCCcceecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHH
Q 004968 554 VCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVR 633 (721)
Q Consensus 554 ~~ir~~r~~~~~~~~p~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~ 633 (721)
++||++|+..+..++ .+.+.+++||++++++|+|++||++|++++.|++|++.|+ +++|||++|++|||++++.
T Consensus 474 v~i~~~r~~~~~~~~--~~~~~~~~G~~~~~~~g~dv~iva~G~~v~~a~~Aa~~L~----~~~Vi~~~~~~Pld~~~i~ 547 (629)
T 2o1x_A 474 FAIRYPRGNTAQVPA--GTWPDLKWGEWERLKGGDDVVILAGGKALDYALKAAEDLP----GVGVVNARFVKPLDEEMLR 547 (629)
T ss_dssp EEEECCSSBCCCCCT--TCCCCCCTTCCEEEECCSSEEEEECHHHHHHHHHHHTTCT----TEEEEECCEEESCCHHHHH
T ss_pred EEEEecCCCCCCCcc--cccccccCCceEEEeeCCCEEEEEecHHHHHHHHHHHHhc----CCEEEeeCCCCCCcHHHHH
Confidence 999999987543221 2245678999999999999999999999999999999996 8999999999999999999
Q ss_pred HHhccCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhh
Q 004968 634 ELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 711 (721)
Q Consensus 634 ~l~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 711 (721)
+++++++.+|||||+. .||||++|++++.++++ +.+++++|+||.|+++|+.+++++++|+|+++|++++++++.
T Consensus 548 ~~~~~~~~vv~vEe~~~~gG~g~~v~~~l~~~~~---~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~~~ 623 (629)
T 2o1x_A 548 EVGGRARALITVEDNTVVGGFGGAVLEALNSMNL---HPTVRVLGIPDEFQEHATAESVHARAGIDAPAIRTVLAELGV 623 (629)
T ss_dssp HHHHHCSEEEEEEEEESSSSHHHHHHHHHHHTTC---CCEEEEEEECSSCCCSCCHHHHHHHHTCSHHHHHHHHHHTTC
T ss_pred HHHhhCCcEEEEecCCCCCCHHHHHHHHHHHhCC---CCCeEEEeeCCcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 9999999999999997 69999999999999875 568999999999999999999999999999999999998763
|
| >2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-114 Score=1010.48 Aligned_cols=612 Identities=40% Similarity=0.644 Sum_probs=507.7
Q ss_pred CCCCccccccCCCccccCCCCHHHHHHHHHHHHHHHHHhHhcCCCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHH
Q 004968 75 DKEPTPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTY 154 (721)
Q Consensus 75 ~~~~~~~l~~i~~p~~~~~~~~~~l~~la~eiR~~~~~~~~~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y 154 (721)
+.|.+|+|++|++|.|+|+++.++|+++++++|+.+++++++++||+++++|+++++++||++|+.|+|+||||+|||+|
T Consensus 4 ~~~~~~~l~~i~~p~d~~~l~~~~l~~l~~~iR~~~~~~~~~~~Gh~~~~lg~~~~~~~l~~~~~~~~D~~v~~~gH~~y 83 (621)
T 2o1s_A 4 DIAKYPTLALVDSTQELRLLPKESLPKLCDELRRYLLDSVSRSSGHFASGLGTVELTVALHYVYNTPFDQLIWDVGHQAY 83 (621)
T ss_dssp CTTTSTTGGGCSSHHHHTTSCGGGHHHHHHHHHHHHHHHSCGGGCTHHHHHTTHHHHHHHHHHSCTTTSEEEESSSTTCH
T ss_pred CCCCCchhhhcCChHHhhhCCHHHHHHHHHHHHHHHHHHHhhcCCCcCCChhHHHHHHHHHhccCCCCCEEEEeCchHHH
Confidence 45778999999999999999999999999999999999999999999999999999999999999899999999999999
Q ss_pred HHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHH
Q 004968 155 AHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEA 234 (721)
Q Consensus 155 ~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ea 234 (721)
+|++++|+.+++.++|+++|++|||++.+++++.|++|++|+++|+|+|+|+|+++++++++|||++|||++++|++||+
T Consensus 84 ~~~~l~G~~~~~~~~r~~~g~~g~~~~~~s~~~~~~~G~~G~gl~~A~G~AlA~~~~~~~~~Vv~v~GDG~~~~G~~~Ea 163 (621)
T 2o1s_A 84 PHKILTGRRDKIGTIRQKGGLHPFPWRGESEYDVLSVGHSSTSISAGIGIAVAAEKEGKNRRTVCVIGDGAITAGMAFEA 163 (621)
T ss_dssp HHHHTTTTGGGGGGTTSTTSCCSSCCTTTCTTCCSCCSSSSCHHHHHHHHHHHHHHHTSCCCEEEEEETTGGGSHHHHHH
T ss_pred HHHHHhCCHhhhhcccccCCCCCCCCCCCCCCCccCCcccchHHHHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhh
Q 004968 235 MSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYAR 314 (721)
Q Consensus 235 ln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~ 314 (721)
||+|+++++|+++|||||+++ ++.+++.+..++++++.++.|..++...+.+....+. +.....+..++++
T Consensus 164 L~~A~~~~~pli~vvnnN~~~--------i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~p~-~~~~~~r~~~~~~ 234 (621)
T 2o1s_A 164 MNHAGDIRPDMLVILNDNEMS--------ISENVGALNNHLAQLLSGKLYSSLREGGKKVFSGVPP-IKELLKRTEEHIK 234 (621)
T ss_dssp HHHHHHHCCSEEEEEEECC-------------------------------------------------------------
T ss_pred HHHHHhhCCCEEEEEeCCCcc--------cCCCcchHHHHHHhhhcchhHHHHHHHHHHHHhccch-HHHHHHHHHHHhh
Confidence 999999999999999999984 4556666666777777777777766655444322110 0233445556655
Q ss_pred cccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccccCCC--CC
Q 004968 315 GMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGASD--SN 392 (721)
Q Consensus 315 ~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~~f--~~ 392 (721)
++..| ..+|++|||++++++||||+++|.++++++++ .++|++||++|.||+||+++|+ ++.+||+.++| .+
T Consensus 235 ~~~~p--~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~--~~gP~lI~v~t~kg~G~~~~e~--~~~~~H~~~~f~~~~ 308 (621)
T 2o1s_A 235 GMVVP--GTLFEELGFNYIGPVDGHDVLGLITTLKNMRD--LKGPQFLHIMTKKGRGYEPAEK--DPITFHAVPKFDPSS 308 (621)
T ss_dssp ----C--HHHHHHTTCEEEEEEETTCHHHHHHHHHHHHH--SCSEEEEEEECCCTTCCCCC-------------------
T ss_pred hccCh--hhHHHHCCCeEeeeeCCCCHHHHHHHHHHHHH--cCCCEEEEEEEecccCCChhhc--CchhccCCCCCCCCc
Confidence 55443 57999999999989999999999999999998 4899999999999999999987 67899999999 55
Q ss_pred CCCCC--CCcccHHHHHHHHHHHHHHcCCCeEEEecCCCCccChHHHHHhCCCcEeeccccHHHHHHHHHHHHhCCCeeE
Q 004968 393 SLPFG--NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPF 470 (721)
Q Consensus 393 g~~~~--~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~G~~p~ 470 (721)
|.+.+ ....+|+++|+++|.+++++|++|+++++|+++++++..|+++||+||||+||+|++|+++|+|+|++|+|||
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~v~~~~~d~~~~~~~~~~~~~~~~r~~~~gIaE~~~~~~a~G~A~~G~rp~ 388 (621)
T 2o1s_A 309 GCLPKSSGGLPSYSKIFGDWLCETAAKDNKLMAITPAMREGSGMVEFSRKFPDRYFDVAIAEQHAVTFAAGLAIGGYKPI 388 (621)
T ss_dssp ---------CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEE
T ss_pred CcccccccchHHHHHHHHHHHHHHHhhCcCEEEEeCcccCCcChHHHHHhCCCceEecCcCHHHHHHHHHHHHHCCCEEE
Confidence 54322 2357899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhC
Q 004968 471 CIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASID 550 (721)
Q Consensus 471 ~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~ 550 (721)
+++|++|++|++||+++++|++++||+++++++|++|+||+|||+.+|+++++++|||+|++|+|++|+++++++|++..
T Consensus 389 ~~~~~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~~g~~G~tH~~~~d~~~~~~iP~l~v~~P~d~~e~~~~l~~a~~~~ 468 (621)
T 2o1s_A 389 VAIYSTFLQRAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYN 468 (621)
T ss_dssp EEEETTGGGGGHHHHHHTTTTTTCCCEEEEESCBCCCTTCGGGCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHHHHHCC
T ss_pred EEehHhHHHHHHHHHHHHHHhcCCCEEEEEECCccCCCCCCccCchHHHHHHhcCCCCEEEecCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999899999999999999999999999999999999999999999855
Q ss_pred CCCEEEEecCCCcccccCCCCCCcceecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHH
Q 004968 551 DRPVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIK 630 (721)
Q Consensus 551 ~~P~~ir~~r~~~~~~~~p~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e 630 (721)
++|++||++|+..+..+++. .+.+++||++++++|+|++||++|++++.|++| ++||+++|||++|++|||++
T Consensus 469 ~~Pv~i~~~r~~~~~~~~~~--~~~~~~G~~~~~~~g~dv~iva~G~~~~~a~~A-----~~Gi~v~Vi~~~~~~P~d~~ 541 (621)
T 2o1s_A 469 DGPSAVRYPRGNAVGVELTP--LEKLPIGKGIVKRRGEKLAILNFGTLMPEAAKV-----AESLNATLVDMRFVKPLDEA 541 (621)
T ss_dssp SSCEEEECCSSBCCCCCCCC--CCCCCTTCCEEEECCSSEEEEEESTTHHHHHHH-----HHHHTCEEEECCEEESCCHH
T ss_pred CCCEEEEeCCCCCCCCCCCc--cccccCCceEEeecCCCEEEEEecHHHHHHHHH-----cCCCCEEEEecCccCCCCHH
Confidence 89999999998765433332 256789999999999999999999999999999 46999999999999999999
Q ss_pred HHHHHhccCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHH
Q 004968 631 LVRELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSL 709 (721)
Q Consensus 631 ~i~~l~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~ 709 (721)
++.+++++++.+|||||+. .||||++|++++.++++ +.+++++|+||.|+++|+++++++++|+|+++|+++|+++
T Consensus 542 ~i~~~~~~~~~vv~vEe~~~~gg~g~~v~~~l~~~~~---~~~v~~ig~~d~f~~~g~~~~l~~~~g~~~~~I~~~i~~~ 618 (621)
T 2o1s_A 542 LILEMAASHEALVTVEENAIMGGAGSGVNEVLMAHRK---PVPVLNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKIKAW 618 (621)
T ss_dssp HHHHHHHHCSEEEEEEEEESTTSHHHHHHHHHHHTTC---CCCEEEEEECSSCCCCSCHHHHHHHTTCSHHHHHHHHHHH
T ss_pred HHHHHHccCCeEEEEECCCCCCCHHHHHHHHHHhcCC---CCCeEEEecCCcCCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 9999999999999999997 69999999999999875 5689999999999999999999999999999999999987
Q ss_pred hh
Q 004968 710 LG 711 (721)
Q Consensus 710 l~ 711 (721)
+.
T Consensus 619 l~ 620 (621)
T 2o1s_A 619 LA 620 (621)
T ss_dssp HC
T ss_pred hc
Confidence 63
|
| >3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-101 Score=889.87 Aligned_cols=549 Identities=22% Similarity=0.310 Sum_probs=481.7
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHHHhHhcC-CCCCCCcccHHHHHHHHhc-c----cC----CCCcEEEecCCchH---H
Q 004968 88 PLRLKSLTIKELKQLAVEIRSELSSIVSKT-EKSLKSSLAAVELTVALHH-V----FH----APVDKILWDVGEQT---Y 154 (721)
Q Consensus 88 p~~~~~~~~~~l~~la~eiR~~~~~~~~~~-~Gh~~sslg~vel~~aL~~-v----f~----~p~D~iv~d~GH~~---y 154 (721)
..++.+.+.+||+++|++||..+++++++. +||+|++||++|++++||+ + ++ .++|+||||+||++ |
T Consensus 2 ~~~~~~~~~~~l~~~a~~iR~~~i~~~~~~~~GH~g~~l~~~e~~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~~~~ly 81 (616)
T 3mos_A 2 YHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKSQDPRNPHNDRFVLSKGHAAPILY 81 (616)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHTTHHHHHHHHHTTCBCCTTCTTCTTSCEEEESSGGGHHHHH
T ss_pred CccccccCHHHHHHHHHHHHHHHHHHHHhcCCCcCCcchhHHHHHHHHHHHhhccCCCCCCCCCCCeEEEcCccHHHHHH
Confidence 356777889999999999999999999865 5999999999999999984 2 32 34899999999999 8
Q ss_pred HHHHHhCc--hhhhHHHHhhC-CCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCC-CCeEEEEEcCCCcccch
Q 004968 155 AHKILTGR--RSLIHTLRKKD-GISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGK-RECIVTVISNGTTMAGQ 230 (721)
Q Consensus 155 ~h~~ltGr--~~~~~~~r~~g-gl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~-~~~VvaviGDGal~~G~ 230 (721)
+|++++|+ .++|.++||++ +++|||++.++.+| +++|++|+++|+|+|+|+|.++.+. +++|||++|||++++|+
T Consensus 82 ~~~~l~G~~~~~~l~~~r~~~s~l~ghp~~~~~~~d-~~~G~lG~gl~~A~G~AlA~~~~~~~~~~vv~v~GDG~~~eG~ 160 (616)
T 3mos_A 82 AVWAEAGFLAEAELLNLRKISSDLDGHPVPKQAFTD-VATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGS 160 (616)
T ss_dssp HHHHHTTSSCGGGGGGTTCTTCSCCSSCCTTSTTCS-SCCCSTTCHHHHHHHHHHHHHHTSCCSCCEEEEEETGGGGSHH
T ss_pred HHHHHcCCCCHHHHHHhccCCCCCCCCCCCCCCccc-ccccccCCccHHHHHHHHHHHHhCCCCCEEEEEECccccccCc
Confidence 99999996 78899999998 79999999887777 6999999999999999999987665 59999999999999999
Q ss_pred HHHHHHHhhhcCC-CEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHH
Q 004968 231 AYEAMSNAGYLDS-NMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKV 309 (721)
Q Consensus 231 ~~Ealn~A~~~~~-plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~ 309 (721)
+||+||+|+++++ ++++|+|||+++ + +.++... . ..
T Consensus 161 ~~Eal~~A~~~~l~~livi~nnN~~~-i-------~~~~~~~-------~---------------------~~------- 197 (616)
T 3mos_A 161 VWEAMAFASIYKLDNLVAILDINRLG-Q-------SDPAPLQ-------H---------------------QM------- 197 (616)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEECSBC-S-------SSBCTTT-------T---------------------CH-------
T ss_pred HHHHHHHHHHcCCCcEEEEEECCCCC-C-------cCCcccc-------c---------------------Ch-------
Confidence 9999999999996 599999999983 2 2221100 0 00
Q ss_pred HHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccccCC
Q 004968 310 DEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGAS 389 (721)
Q Consensus 310 ~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~~ 389 (721)
.++ ..+|++|||+++ +|||||+++|.++++++ .++|++||++|.||+||+.+| ++.+|||.+.
T Consensus 198 ~~~---------~~~~~a~G~~~~-~VdG~d~~~l~~al~~~----~~~P~lI~v~T~kg~G~~~~e---~~~~~Hg~~~ 260 (616)
T 3mos_A 198 DIY---------QKRCEAFGWHAI-IVDGHSVEELCKAFGQA----KHQPTAIIAKTFKGRGITGVE---DKESWHGKPL 260 (616)
T ss_dssp HHH---------HHHHHHTTCEEE-EEETTCHHHHHHHHHSC----CSSCEEEEEECCTTTTSTTTT---TCSSCTTCCC
T ss_pred HHH---------HHHHHHcCCeEE-EEcCCCHHHHHHHHHhc----CCCCEEEEEEEeccccccccc---CchhhcCCCC
Confidence 011 346899999998 88999999999999654 378999999999999998877 4889999753
Q ss_pred -----------C----CCCCCCC--------------------------CCcccHHHHHHHHHHHHHHcCCCeEEEecCC
Q 004968 390 -----------D----SNSLPFG--------------------------NYSRTYDDCFIEALVMEAEKDKDIVVVHAGM 428 (721)
Q Consensus 390 -----------f----~~g~~~~--------------------------~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~ 428 (721)
+ ++++... ....+++++|+++|.+++++||+|+++++||
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~r~a~~~~L~~l~~~d~~vv~~~aD~ 340 (616)
T 3mos_A 261 PKNMAEQIIQEIYSQIQSKKKILATPPQEDAPSVDIANIRMPSLPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDT 340 (616)
T ss_dssp CHHHHHHHHHHHHHTCCCCCCCCCBCCCCCCCCCCCSCCCCSSCCCCCTTCBCCHHHHHHHHHHHHHHHCTTEEEEESSC
T ss_pred CHHHHHHHHHHHHHHHHhhhhhCcCccchhhhhhhhhccccCCCcccccccchHHHHHHHHHHHHHHhhCCCEEEEeCCc
Confidence 1 2332110 1123567999999999999999999999999
Q ss_pred CCccChHHHHHhCCCcEeeccccHHHHHHHHHHHHhCCC-eeEEEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC-c
Q 004968 429 EMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGL-KPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-V 506 (721)
Q Consensus 429 ~~~~~l~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~G~-~p~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~ 506 (721)
++++++..|+++||+||||+||+|++|+++|+|+|++|+ +||+++|++|++|++|||++. +++++||+++.+++|+ +
T Consensus 341 ~~~~~~~~~~~~~p~R~~d~gIaE~~~v~~a~G~A~~G~~~~~~~~f~~Fl~~a~dqi~~~-a~~~~~v~~v~~~~g~~~ 419 (616)
T 3mos_A 341 KNSTFSEIFKKEHPDRFIECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMA-AISESNINLCGSHCGVSI 419 (616)
T ss_dssp HHHHSHHHHHHHCGGGEEECCSCHHHHHHHHHHHHGGGCCEEEEEEEGGGGGGGHHHHHHH-HHTTCCEEEEEESBSGGG
T ss_pred CCCcchhhHHHhCCCCeEEcCccHHHHHHHHHHHHHcCCCCEEEEehHHHHHHHHHHHHHH-HHhCCCeEEEEECCCccc
Confidence 998999999999999999999999999999999999997 799999999999999999876 8999999999999999 8
Q ss_pred CCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEecCCCcccccCCCCCCcceecCceEEEEe
Q 004968 507 GSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVE 586 (721)
Q Consensus 507 G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~gk~~vl~e 586 (721)
|+||+|||+.+|+++|+++||++|++|+|++|+..++++|++ .++|++||++|+..+.. ....+.+++||++++++
T Consensus 420 G~dG~tH~~~ed~a~l~~iP~l~V~~P~d~~e~~~~l~~a~~-~~gp~~ir~~r~~~p~~---~~~~~~~~~Gka~vl~e 495 (616)
T 3mos_A 420 GEDGPSQMALEDLAMFRSVPTSTVFYPSDGVATEKAVELAAN-TKGICFIRTSRPENAII---YNNNEDFQVGQAKVVLK 495 (616)
T ss_dssp CTTCGGGCBSSHHHHHHTSTTEEEECCCSHHHHHHHHHHHHT-CCSEEEEECCSSCCBCC---SCTTCCCCTTCCEEEEC
T ss_pred cCCCCcccCHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHh-cCCCEEEEEeCCCCCcc---CCCcccccCCeEEEEEe
Confidence 999999999999999999999999999999999999999986 58999999999864321 12245678999999999
Q ss_pred CCc--EEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccC-CeEEEEcCCC-CCChHHHHHHHHH
Q 004968 587 GKD--VALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNH-TFLITVEEGS-IGGFGSHVSHFIA 662 (721)
Q Consensus 587 G~d--v~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~-~~vvvvEe~~-~gG~gs~v~~~l~ 662 (721)
|+| ++||+||++++.|++|++.|+++||+++|||+||++|||+++|.++++++ +.||||||+. .||||++|++++.
T Consensus 496 g~d~dv~iva~G~~v~~al~Aa~~L~~~Gi~v~Vidlr~l~PlD~e~i~~~~~~~~~~vvvvEe~~~~GG~G~~v~~~l~ 575 (616)
T 3mos_A 496 SKDDQVTVIGAGVTLHEALAAAELLKKEKINIRVLDPFTIKPLDRKLILDSARATKGRILTVEDHYYEGGIGEAVSSAVV 575 (616)
T ss_dssp CSSEEEEEECCTHHHHHHHHHHHHHHTTTCEEEEEECSEEESCCHHHHHHHHHHTTTEEEEEEEEESTTSHHHHHHHHHT
T ss_pred CCCCCEEEEEeCHHHHHHHHHHHHHHhcCCCEEEEEeCccCCCCHHHHHHHHHhcCCEEEEEcCCCCCcCHHHHHHHHHH
Confidence 976 99999999999999999999999999999999999999999999999888 8999999997 7999999999999
Q ss_pred hcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHH
Q 004968 663 LDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATAL 707 (721)
Q Consensus 663 ~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~ 707 (721)
+++ +.+++++|+| .|+++|+++++++++|||+++|+++|+
T Consensus 576 ~~~----~~~v~~~g~~-~f~~~g~~~~l~~~~gl~~~~I~~~i~ 615 (616)
T 3mos_A 576 GEP----GITVTHLAVN-RVPRSGKPAELLKMFGIDRDAIAQAVR 615 (616)
T ss_dssp TCT----TCEEEEEEEC-SCCCCSCHHHHHHHTTCSHHHHHHHHT
T ss_pred hcC----CCCEEEEeCC-CCCCCCCHHHHHHHHCcCHHHHHHHHh
Confidence 865 4689999998 599999999999999999999999885
|
| >3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-99 Score=874.53 Aligned_cols=532 Identities=18% Similarity=0.214 Sum_probs=462.6
Q ss_pred CCHHHHHHHHHHHHHHHHHhHhc-CCCCCCCcccHHHHHHHHhcccC--------CCCcEEEecCCchH---HHHHHHhC
Q 004968 94 LTIKELKQLAVEIRSELSSIVSK-TEKSLKSSLAAVELTVALHHVFH--------APVDKILWDVGEQT---YAHKILTG 161 (721)
Q Consensus 94 ~~~~~l~~la~eiR~~~~~~~~~-~~Gh~~sslg~vel~~aL~~vf~--------~p~D~iv~d~GH~~---y~h~~ltG 161 (721)
|+.++|+++|++||..+++++++ ++||+|+++|++|++++||++|+ .++|+||||+||++ |+|++++|
T Consensus 1 ~~~~~l~~~a~~iR~~~i~~v~~a~~GH~g~~lg~~ei~~~L~~~~~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~l~G 80 (632)
T 3l84_A 1 MNIQILQEQANTLRFLSADMVQKANSGHPGAPLGLADILSVLSYHLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSG 80 (632)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHTTTCCCCTTCTTCTTSCEEEESSGGGHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcChhHHHHHHHHHHHhCcCCCCCCCCCCCEEEEcCCcccHHHHHHHHHhC
Confidence 56789999999999999999996 89999999999999999988775 25899999999999 99999999
Q ss_pred ch---hhhHHHHhhCCC-CCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCC-------CCeEEEEEcCCCcccch
Q 004968 162 RR---SLIHTLRKKDGI-SGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGK-------RECIVTVISNGTTMAGQ 230 (721)
Q Consensus 162 r~---~~~~~~r~~ggl-~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~-------~~~VvaviGDGal~~G~ 230 (721)
++ +++.++||+++. +|||++ +++++.+++|++|+++|+|+|+|+|.++++. +++|||++|||++++|+
T Consensus 81 ~~~~~~~l~~~r~~~s~~~ghp~~-~~~g~~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG~ 159 (632)
T 3l84_A 81 YDLSLEDLKNFRQLHSKTPGHPEI-STLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGI 159 (632)
T ss_dssp CSCCHHHHTTTTCTTCSSCSSCCT-TSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSHH
T ss_pred CCCCHHHHHHHhcCCCCCCCCCCC-CCCCcccCCcchhhHHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchhhcc
Confidence 95 789999999985 699999 9999999999999999999999999998764 89999999999999999
Q ss_pred HHHHHHHhhhcCC-CEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHH
Q 004968 231 AYEAMSNAGYLDS-NMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKV 309 (721)
Q Consensus 231 ~~Ealn~A~~~~~-plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~ 309 (721)
+||||++|+++++ |+|+|+|||+++ ++++++..
T Consensus 160 ~~Eal~~A~~~~L~~livi~nnN~~~--------i~~~~~~~-------------------------------------- 193 (632)
T 3l84_A 160 SYEACSLAGLHKLDNFILIYDSNNIS--------IEGDVGLA-------------------------------------- 193 (632)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEECSEE--------TTEEGGGT--------------------------------------
T ss_pred HHHHHHHHHHcCCCcEEEEEECCCcc--------cccchhhh--------------------------------------
Confidence 9999999999996 599999999983 33333311
Q ss_pred HHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccccC-
Q 004968 310 DEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGA- 388 (721)
Q Consensus 310 ~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~- 388 (721)
..++...+|++|||+++ ++||||+++|.++|+++++ .++|++||++|.||+|++++|+ ..+|||.+
T Consensus 194 -------~~~d~~~~~~a~G~~~~-~vdGhd~~~l~~al~~A~~--~~~P~lI~v~T~kG~G~~~~e~---~~~~Hg~~l 260 (632)
T 3l84_A 194 -------FNENVKMRFEAQGFEVL-SINGHDYEEINKALEQAKK--STKPCLIIAKTTIAKGAGELEG---SHKSHGAPL 260 (632)
T ss_dssp -------CCCCHHHHHHHTTCEEE-EEETTCHHHHHHHHHHHHT--CSSCEEEEEECCTTTTCGGGTT---CGGGSSSCC
T ss_pred -------cChhHHHHHHHcCCeEE-EEeeCCHHHHHHHHHHHHh--CCCCEEEEEeeEeeecCCCCCC---cccccCCCC
Confidence 01122457899999999 8999999999999999998 5899999999999999999874 78999986
Q ss_pred ------------------CCC--------------CCCCC---------------------C------------CCcccH
Q 004968 389 ------------------SDS--------------NSLPF---------------------G------------NYSRTY 403 (721)
Q Consensus 389 ------------------~f~--------------~g~~~---------------------~------------~~~~~~ 403 (721)
+|. +|++. + ......
T Consensus 261 ~~e~~~~~~~~l~~~~~~~f~v~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~a~ 340 (632)
T 3l84_A 261 GEEVIKKAKEQAGFDPNISFHIPQASKIRFESAVELGDLEEAKWKDKLEKSAKKELLERLLNPDFNKIAYPDFKGKDLAT 340 (632)
T ss_dssp CHHHHHHHHHHHTCCTTCCSCCCHHHHHHHHTHHHHHHHHHHHHHHHHHHSSCHHHHHHHHSCCSTTCCCCCCTTCCBCH
T ss_pred CHHHHHHHHHHhCCCCCCCccCChHHHHHHHHHHhhcchhHHHHHHHhhcccCchhhhhhCccchhhhcchhccccchHH
Confidence 451 11000 0 123467
Q ss_pred HHHHHHHHHHHHHcCCCeEEEecCCCCccChH-HHHHhC-CCcEeeccccHHHHHHHHHHHHhC-CCeeEEEecHhhHHH
Q 004968 404 DDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQ-LFQEKF-PERYFDVGMAEQHAVTFSAGLACG-GLKPFCIIPSAFLQR 480 (721)
Q Consensus 404 ~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~-~f~~~f-p~R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~tys~Fl~r 480 (721)
+++++++|.++++.+|+++++++|++++++.. .+.++| |+||||+||+||+|+++|+|||+. |++||++||++|++|
T Consensus 341 r~a~~~~l~~l~~~~p~~v~~~aDl~~s~~~~~~~~~~f~p~R~~d~GIaE~~~v~~a~GlA~~gG~~P~~~~f~~F~~~ 420 (632)
T 3l84_A 341 RDSNGEILNVLAKNLEGFLGGSADLGPSNKTELHSMGDFVEGKNIHFGIREHAMAAINNAFARYGIFLPFSATFFIFSEY 420 (632)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTSCBTTTSSEEECCSCHHHHHHHHHHHHHHSSCEEEEEEEGGGHHH
T ss_pred HHHHHHHHHHHHhhCCCEEEEecccCCccCcchhcccccCCCCeEEeCccHHHHHHHHHHHHHcCCCEEEEEecHHHHHH
Confidence 88999999999999999999999998665443 123678 999999999999999999999999 899999999999999
Q ss_pred HHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEec
Q 004968 481 AYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYP 559 (721)
Q Consensus 481 a~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~~ 559 (721)
+++|| +++|++++||++++++.|+ +|+||+|||+++|+++||++|||+|++|+|++|++.+|++|++ .++|++||++
T Consensus 421 ~~~~i-r~~a~~~~pv~~~~t~~g~g~G~dG~THq~~ed~a~lr~iP~l~V~~P~d~~e~~~~l~~A~~-~~~Pv~ir~~ 498 (632)
T 3l84_A 421 LKPAA-RIAALMKIKHFFIFTHDSIGVGEDGPTHQPIEQLSTFRAMPNFLTFRPADGVENVKAWQIALN-ADIPSAFVLS 498 (632)
T ss_dssp HHHHH-HHHHHHTCCCEEEEECCSGGGCTTCGGGSCSSHHHHHHHSSSCEEECCSSHHHHHHHHHHHHH-CSSCEEEECC
T ss_pred HHHHH-HHHhccCCCEEEEEECCCcCCCCCCCCCCCHhHHHHHhcCCCCEEEecCCHHHHHHHHHHHHh-CCCCEEEEEc
Confidence 99998 5789999999999988777 8999999999999999999999999999999999999999997 7899999999
Q ss_pred CCCcccccCCCCCCcceecCce-EEEEe--CCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHH--HHH
Q 004968 560 RGAIVRTDLPGYRGIPIEIGKG-KVLVE--GKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKL--VRE 634 (721)
Q Consensus 560 r~~~~~~~~p~~~~~~~~~gk~-~vl~e--G~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~--i~~ 634 (721)
|+.. ++....+..+++++ +++++ |+|++||++|++++.|++|++.|+++||+++|||++|++|||+++ +++
T Consensus 499 r~~~----~~~~~~~~~~~~~g~~vl~~~~g~dvtiia~G~~v~~al~Aa~~L~~~Gi~~~Vi~~~~i~PlD~~~~~~~~ 574 (632)
T 3l84_A 499 RQKL----KALNEPVFGDVKNGAYLLKESKEAKFTLLASGSEVWLCLESANELEKQGFACNVVSMPCFELFEKQDKAYQE 574 (632)
T ss_dssp SSCB----CCCCCCSBCCGGGSSEEEECCTTCSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECSBHHHHHTSCHHHHH
T ss_pred CCCC----CCCccccccccccccEEEEecCCCCEEEEEechHHHHHHHHHHHHHhcCCCeEEEecCcCCCcchhHHHHHH
Confidence 9875 23222234567776 89999 899999999999999999999999999999999999999999874 555
Q ss_pred HhccCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHH
Q 004968 635 LCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALS 708 (721)
Q Consensus 635 l~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~ 708 (721)
.+.+ +.|||||++...||++.+ . +++|+ |+|+++|+.++|++++|||+++|++++++
T Consensus 575 sv~~-~~vv~vE~~~~~g~~~~~--------------~-~~iGi-d~Fg~sg~~~~l~~~~Glt~~~I~~~i~~ 631 (632)
T 3l84_A 575 RLLK-GEVIGVEAAHSNELYKFC--------------H-KVYGI-ESFGESGKDKDVFERFGFSVSKLVNFILS 631 (632)
T ss_dssp HHCC-SEEEEECSSCCGGGGGTC--------------S-EEECC-CSCCCSSCHHHHHHHTTCSHHHHHHHHTT
T ss_pred HhcC-CCEEEEeCChhhhHHHHh--------------C-eEEEc-CCCcccCCHHHHHHHhCcCHHHHHHHHhh
Confidence 5444 678999999877775321 1 67999 99999999999999999999999998853
|
| >3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-97 Score=866.60 Aligned_cols=548 Identities=18% Similarity=0.225 Sum_probs=459.6
Q ss_pred cCCCCHHHHHHHH-HHHHHHHHHhHhc-CCCCCCCcccHHHHHHHHhc-ccC--------CCCcEEEecCCchH---HHH
Q 004968 91 LKSLTIKELKQLA-VEIRSELSSIVSK-TEKSLKSSLAAVELTVALHH-VFH--------APVDKILWDVGEQT---YAH 156 (721)
Q Consensus 91 ~~~~~~~~l~~la-~eiR~~~~~~~~~-~~Gh~~sslg~vel~~aL~~-vf~--------~p~D~iv~d~GH~~---y~h 156 (721)
+++++.++|+++| ++||..+++++.+ ++||+|++||++|++++||+ +|+ .++|+||||+||++ |+|
T Consensus 21 ~~~~~~~~l~~~a~~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa~ 100 (690)
T 3m49_A 21 QSNAMSHSIEQLSINTIRTLSIDAIEKANSGHPGMPMGAAPMAYTLWTQFMKHNPNNPTWFNRDRFVLSAGHGSMLLYSL 100 (690)
T ss_dssp -----CCSHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTSCEEEESSGGGHHHHHHH
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEECCccHHHHHHHH
Confidence 6777777899999 8999999999985 89999999999999999995 554 25899999999999 999
Q ss_pred HHHhCc---hhhhHHHHhhCCCC-CCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCC----------CCeEEEEEc
Q 004968 157 KILTGR---RSLIHTLRKKDGIS-GYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGK----------RECIVTVIS 222 (721)
Q Consensus 157 ~~ltGr---~~~~~~~r~~ggl~-G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~----------~~~VvaviG 222 (721)
++|+|+ .+++.++||+|+.. |||++.+++++.+++|++|+++|+|+|+|+|.++++. +++|||++|
T Consensus 101 l~l~G~~~~~~~l~~~rq~gs~~~Ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~G 180 (690)
T 3m49_A 101 LHLSGYDVTMDDLKNFRQWGSKTPGHPEYGHTAGVDATTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICG 180 (690)
T ss_dssp HHHTTSSCCHHHHTTTTCTTCSSCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEEC
T ss_pred HHHHCCCCCHHHHHhhccCCCCCCCCCCCCCCCccccCCccccccHHHHHHHHHHHHHhhccccccccccCCCeEEEEEC
Confidence 999999 88999999999855 9999999999999999999999999999999997753 899999999
Q ss_pred CCCcccchHHHHHHHhhhcCC-CEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcc
Q 004968 223 NGTTMAGQAYEAMSNAGYLDS-NMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRG 301 (721)
Q Consensus 223 DGal~~G~~~Ealn~A~~~~~-plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~ 301 (721)
||++++|++||||++|+++++ |+|+|+|||+++ +++++...
T Consensus 181 DG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~~--------i~~~~~~~------------------------------ 222 (690)
T 3m49_A 181 DGDLMEGVSAEASSLAAHLQLGRLVVLYDSNDIS--------LDGDLNRS------------------------------ 222 (690)
T ss_dssp HHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSBC--------SSSBGGGT------------------------------
T ss_pred chhhhhccHHHHHHHHHHhCCCeEEEEEECCCee--------cccchhhc------------------------------
Confidence 999999999999999999995 599999999984 23332210
Q ss_pred hHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCccccccccc
Q 004968 302 MHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAI 381 (721)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~ 381 (721)
..++...+|++|||++++++||||+++|.++|+++++. .++|++||++|.||+|+++.| ++
T Consensus 223 ---------------~~~d~~~~~~a~G~~~~~v~DG~d~~~l~~Al~~a~~~-~~~P~lI~v~T~kG~G~~~~~---~~ 283 (690)
T 3m49_A 223 ---------------FSESVEDRYKAYGWQVIRVEDGNDIEAIAKAIEEAKAD-EKRPTLIEVRTTIGFGSPNKS---GK 283 (690)
T ss_dssp ---------------CCCCHHHHHHHHTCEEEEESCTTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTTT---TS
T ss_pred ---------------cchhHHHHHHHcCCcEEEEecCCCHHHHHHHHHHHHhc-CCCCEEEEEEeecccccCccc---Cc
Confidence 01122457899999999777999999999999999873 478999999999999998766 48
Q ss_pred ccccccC-------------------CC--CCCC-------------C------------------------------C-
Q 004968 382 EKQQEGA-------------------SD--SNSL-------------P------------------------------F- 396 (721)
Q Consensus 382 ~~~Hg~~-------------------~f--~~g~-------------~------------------------------~- 396 (721)
.+|||.+ +| .++. . .
T Consensus 284 ~~~Hg~~~~~e~~~~~~~~l~~~~~~~F~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~a~~~~~~~~~~lp 363 (690)
T 3m49_A 284 SASHGSPLGVEETKLTKEAYAWTAEQDFHVAEEVYENFRKTVQDVGETAQAEWNTMLGEYAQAYPELANELQAAMNGLLP 363 (690)
T ss_dssp GGGTSSCCCHHHHHHHHHHTTCCCCSTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTCCC
T ss_pred ccccCCCCCHHHHHHHHHHhCCCCCCCCcCChhHHHHHHHHHhhhcchhhHHHHHHHHHHHHhCHHHHHHHHHHhcccCc
Confidence 8999986 35 1110 0 0
Q ss_pred -------C----CCcccHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh-----HHHHHh-CCCcEeeccccHHHHHHHH
Q 004968 397 -------G----NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL-----QLFQEK-FPERYFDVGMAEQHAVTFS 459 (721)
Q Consensus 397 -------~----~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l-----~~f~~~-fp~R~~d~GIaE~~~v~~A 459 (721)
+ ....+++++++++|.++++++|+++++++|++++++. .+|+++ +|+||||+||+||+|+++|
T Consensus 364 ~~~~~~~~~~~~~~~~a~R~a~g~~L~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~~~R~~d~GIaE~~mv~~A 443 (690)
T 3m49_A 364 EGWEQNLPTYELGSKAATRNSSGAVINAIAESVPSFFGGSADLAGSNKTYMNNEKDFTRDDYSGKNIWYGVREFAMGAAM 443 (690)
T ss_dssp TTGGGGCCCCCTTCEEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTSCBCBTTBTTCCEEECCSCHHHHHHHH
T ss_pred hhhhhhccccccccchHHHHHHHHHHHHHHhhCCCEEEEeCcccccCCccccccccchhhcCCCceEEcCchHHHHHHHH
Confidence 0 1123678899999999999999999999999876554 467765 5899999999999999999
Q ss_pred HHHHhC-CCeeEEEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHH
Q 004968 460 AGLACG-GLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDED 537 (721)
Q Consensus 460 aGlA~~-G~~p~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~ 537 (721)
+|||+. |++||++||+.|..++..|| +++|++++||+|+++++|+ +|+||+|||+++|+++||++|||+|++|+|++
T Consensus 444 ~GlA~~gG~~P~~~tf~~Fs~f~~~ai-r~~al~~lpVv~v~~~~gigvG~dG~THq~ied~a~lr~iPnl~V~~Pad~~ 522 (690)
T 3m49_A 444 NGIALHGGLKTYGGTFFVFSDYLRPAI-RLAALMQLPVTYVFTHDSIAVGEDGPTHEPIEQLAALRAMPNVSVIRPADGN 522 (690)
T ss_dssp HHHHHHSSCEEEEEEEGGGGGGGHHHH-HHHHHHTCCCEEEEECCSGGGCTTCGGGCCSSHHHHHHTSTTCEEECCSSHH
T ss_pred HHHHHcCCCEEEEEecHHHHHHHHHHH-HHHHhcCCCcEEEEECCCcCCCCCCCccCCHHHHHHHhcCCCCEEEeeCCHH
Confidence 999999 89999998755554444454 5789999999999999999 89999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCCCcccccCCCC-CCcceecCceEEEEeCC----cEEEEEechhhHHHHHHHHHHHhC
Q 004968 538 ELVDMVATVASIDDRPVCFRYPRGAIVRTDLPGY-RGIPIEIGKGKVLVEGK----DVALLGYGAMVQNCLKARALLSKL 612 (721)
Q Consensus 538 E~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~p~~-~~~~~~~gk~~vl~eG~----dv~Iva~Gs~v~~al~Aa~~L~~~ 612 (721)
|++.+|++|++..++|++||++|+..+....... ..+.+++|+ +++++|+ |++||++|++++.|++|++.|+++
T Consensus 523 E~~~~l~~Ai~~~~~Pv~ir~~R~~~p~~~~~~~~~~~~~~~G~-~vlr~g~~g~~dvtiia~G~~v~~Al~Aa~~L~~~ 601 (690)
T 3m49_A 523 ESVAAWRLALESTNKPTALVLTRQDLPTLEGAKDDTYEKVAKGA-YVVSASKKETADVILLATGSEVSLAVEAQKALAVD 601 (690)
T ss_dssp HHHHHHHHHHHCSSSCEEEECCSSEEECCHHHHTTHHHHHHTSC-EEEECCSSSSCSEEEEECTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCEEEEeecccCCCCCccccccccccCCCe-EEEEecCCCCCCEEEEEechHHHHHHHHHHHHHhc
Confidence 9999999999865899999999987543210000 013566776 7899985 999999999999999999999999
Q ss_pred CCCeEEeecCccccccH---HHHHHHh-ccCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCH
Q 004968 613 GIDVTVADARFCKPLDI---KLVRELC-QNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASP 688 (721)
Q Consensus 613 Gi~v~VId~~~l~PlD~---e~i~~l~-~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~ 688 (721)
||+++|||+||++|||. +.+.+++ ++++.+|+||++...||. +++...+ ..+|+ |+|+++|+.
T Consensus 602 GI~~~Vid~~~i~p~D~~d~~~~~~v~~~~~~~~v~vEe~~~~G~~----~~~~~~~--------~~igi-d~Fg~sg~~ 668 (690)
T 3m49_A 602 GVDASVVSMPSMDRFEAQTAEYKESVLPKAVTKRFAIEMGATFGWH----RYVGLEG--------DVLGI-DTFGASAPG 668 (690)
T ss_dssp TCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEECSSCCTTTH----HHHTTTC--------EEECC-CSCCCSSCH
T ss_pred CCCeEEEecccCCcCccccHHHHHHHhhccCCeEEEEECCchhhHH----HHhccCC--------CEEcc-CcCcCcCCH
Confidence 99999999999999985 4445555 467889999999876664 4444332 35888 999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHh
Q 004968 689 TQQLALAGLTGHHIAATALSLL 710 (721)
Q Consensus 689 ~~l~~~~gl~~~~I~~~i~~~l 710 (721)
+++++++|||+++|+++|++++
T Consensus 669 ~~l~~~~Glt~e~I~~~i~~~l 690 (690)
T 3m49_A 669 EKIMEEYGFTVENVVRKVKEML 690 (690)
T ss_dssp HHHHHHTTCSHHHHHHHHHHHC
T ss_pred HHHHHHHCcCHHHHHHHHHHhC
Confidence 9999999999999999998764
|
| >3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-97 Score=861.23 Aligned_cols=542 Identities=18% Similarity=0.191 Sum_probs=469.2
Q ss_pred HHHHHHHH-HHHHHHHHHhHhc-CCCCCCCcccHHHHHHHHhc-ccC-C-------CCcEEEecCCchH---HHHHHHhC
Q 004968 96 IKELKQLA-VEIRSELSSIVSK-TEKSLKSSLAAVELTVALHH-VFH-A-------PVDKILWDVGEQT---YAHKILTG 161 (721)
Q Consensus 96 ~~~l~~la-~eiR~~~~~~~~~-~~Gh~~sslg~vel~~aL~~-vf~-~-------p~D~iv~d~GH~~---y~h~~ltG 161 (721)
.+||+++| ++||..+++++++ .+||+|+++|++|++.+||+ +|+ . ++|+||||+||++ |+|++|+|
T Consensus 19 ~~~l~~~a~~~iR~~~~~~v~~a~sGH~g~~ls~a~i~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~s~~lYa~l~l~G 98 (700)
T 3rim_A 19 WTEIDSAAVDTIRVLAADAVQKVGNGHPGTAMSLAPLAYTLFQRTMRHDPSDTHWLGRDRFVLSAGHSSLTLYIQLYLGG 98 (700)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHTHHHHHHHHHTTCCCCTTCTTCTTCCEEEESSTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHhCCCCCCCCCCCCCeEEECCCchhHHHHHHHHHhC
Confidence 46799999 8999999999996 57999999999999999996 775 2 4899999999999 99999999
Q ss_pred c---hhhhHHHHhhCC-CCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHc-------------CCCCeEEEEEcCC
Q 004968 162 R---RSLIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIK-------------GKRECIVTVISNG 224 (721)
Q Consensus 162 r---~~~~~~~r~~gg-l~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~-------------g~~~~VvaviGDG 224 (721)
+ .+++.++||+|+ ++|||++.+++++.+++|++|+++|+|+|||+|.|++ +.+++|||++|||
T Consensus 99 ~~~~~~~l~~fr~~gs~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~GDG 178 (700)
T 3rim_A 99 FGLELSDIESLRTWGSKTPGHPEFRHTPGVEITTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDG 178 (700)
T ss_dssp SSCCHHHHTTTTSTTCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEEEHH
T ss_pred CCCCHHHHHHhhcCCCCCCCCCCCCCCCCccccccccCCcchHHHHHHHHHHHHhhhccccccccccCCCCeEEEEECCc
Confidence 9 888999999998 6999999899999999999999999999999999985 5689999999999
Q ss_pred CcccchHHHHHHHhhhcCC-CEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchH
Q 004968 225 TTMAGQAYEAMSNAGYLDS-NMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMH 303 (721)
Q Consensus 225 al~~G~~~Ealn~A~~~~~-plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~ 303 (721)
++++|++|||+|+|+++++ |||+|++||+++ ++.+++..
T Consensus 179 ~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~s--------i~~~~~~~-------------------------------- 218 (700)
T 3rim_A 179 DIEEGVTSEASSLAAVQQLGNLIVFYDRNQIS--------IEDDTNIA-------------------------------- 218 (700)
T ss_dssp HHHSHHHHHHHHHHHHTTCTTEEEEEEECSEE--------TTEEGGGT--------------------------------
T ss_pred ccccChHHHHHHHHHHcCCCcEEEEEECCCcc--------cccchhhc--------------------------------
Confidence 9999999999999999997 599999999983 33333210
Q ss_pred HHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCccccccccccc
Q 004968 304 EWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEK 383 (721)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~ 383 (721)
...+...+|++|||+++.+.||||+++|.++++++++. .++|++|+++|.||+|++++|+ ..+
T Consensus 219 -------------~~~~~~~~~~a~G~~~~~V~DG~D~~al~~Al~~A~~~-~~~P~lI~~~T~kG~G~~~~e~---~~~ 281 (700)
T 3rim_A 219 -------------LCEDTAARYRAYGWHVQEVEGGENVVGIEEAIANAQAV-TDRPSFIALRTVIGYPAPNLMD---TGK 281 (700)
T ss_dssp -------------CCCCHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTTTT---SHH
T ss_pred -------------cchhHHHHHHHcCCeEEEECCCCCHHHHHHHHHHHHHc-CCCCEEEEEEEEeeecCCccCC---Ccc
Confidence 00112457899999999533999999999999999873 4899999999999999999985 688
Q ss_pred ccccCC-------------------CC--------------CCC-------------------------------CC---
Q 004968 384 QQEGAS-------------------DS--------------NSL-------------------------------PF--- 396 (721)
Q Consensus 384 ~Hg~~~-------------------f~--------------~g~-------------------------------~~--- 396 (721)
|||.++ |. +|+ ..
T Consensus 282 ~Hg~~~~~e~~~~~~~~l~~~~~~~f~v~~~v~~~~~~~~~~g~~~~~~w~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~ 361 (700)
T 3rim_A 282 AHGAALGDDEVAAVKKIVGFDPDKTFQVREDVLTHTRGLVARGKQAHERWQLEFDAWARREPERKALLDRLLAQKLPDGW 361 (700)
T ss_dssp HHHSCCCHHHHHHHHHHHTCCTTCSSCCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCTTT
T ss_pred ccCCCCCHHHHHHHHHHcCCCcccCccCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhChHHHHHHHHHhccCCCcch
Confidence 999753 31 010 00
Q ss_pred ----C-----CCcccHHHHHHHHHHHHHHcCCCeEEEecCCCCccC-----hHHHHHhC------C----CcEeeccccH
Q 004968 397 ----G-----NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLS-----LQLFQEKF------P----ERYFDVGMAE 452 (721)
Q Consensus 397 ----~-----~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~-----l~~f~~~f------p----~R~~d~GIaE 452 (721)
+ ....+++++|+++|.+++++||+++++++|++++++ +..|+++| | +||||+||+|
T Consensus 362 ~~~~p~~~~~~~~~atr~a~~~~L~~l~~~~p~vv~~saDl~~s~~t~~~~~~~f~~~~~~~~~~p~~~~~R~id~GIaE 441 (700)
T 3rim_A 362 DADLPHWEPGSKALATRAASGAVLSALGPKLPELWGGSADLAGSNNTTIKGADSFGPPSISTKEYTAHWYGRTLHFGVRE 441 (700)
T ss_dssp TSSCCCCCTTSSCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEESCGGGCCSSCCEETTCCEEECCSCH
T ss_pred hhhcccccccccchHHHHHHHHHHHHHHhhCCCEEEEeCCccCCCCcccccchhhcccccccccCCcccCCceeecCccH
Confidence 0 023467899999999999999999999999987765 46788888 9 5999999999
Q ss_pred HHHHHHHHHHHhC-CCeeEEEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEE
Q 004968 453 QHAVTFSAGLACG-GLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIV 530 (721)
Q Consensus 453 ~~~v~~AaGlA~~-G~~p~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V 530 (721)
|+|+++|+|||+. |++||++||+.|+.++++|| +++|++++||++++++.|+ +|+||+|||+++|+++||++|||+|
T Consensus 442 ~~mv~~A~GlA~~gG~~Pv~~tF~~F~d~~~~~i-r~~al~~lpvv~v~thdg~gvG~dG~THq~ied~a~lr~iPnl~V 520 (700)
T 3rim_A 442 HAMGAILSGIVLHGPTRAYGGTFLQFSDYMRPAV-RLAALMDIDTIYVWTHDSIGLGEDGPTHQPIEHLSALRAIPRLSV 520 (700)
T ss_dssp HHHHHHHHHHHHHSSCEEEEEEEGGGGGGGHHHH-HHHHHHTCCCEEEEECCSGGGCTTCTTTSCSSHHHHHHTSTTCEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEecHHHHHHHHHHH-HHhcCCCCCEEEEEeCCCcccCCCCCccCChhHHHHHhcCCCCEE
Confidence 9999999999999 99999999999998888886 6799999999999988877 8999999999999999999999999
Q ss_pred EeeCCHHHHHHHHHHHHHhCC--CCEEEEecCCCcccccCCCCCCcceecCceEEEEeCC--------cEEEEEechhhH
Q 004968 531 MAPSDEDELVDMVATVASIDD--RPVCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEGK--------DVALLGYGAMVQ 600 (721)
Q Consensus 531 ~~Psd~~E~~~~l~~a~~~~~--~P~~ir~~r~~~~~~~~p~~~~~~~~~gk~~vl~eG~--------dv~Iva~Gs~v~ 600 (721)
++|+|++|++.+|++|++..+ +|++||++|+..+. ++....+.+++|+ +++++|+ |++||++|++++
T Consensus 521 ~~Pad~~e~~~~l~~Ai~~~~~~~Pv~ir~~r~~~~~--~~~~~~~~~~~G~-~vlr~g~~~~~~~~~dvtiia~G~~v~ 597 (700)
T 3rim_A 521 VRPADANETAYAWRTILARRNGSGPVGLILTRQGVPV--LDGTDAEGVARGG-YVLSDAGGLQPGEEPDVILIATGSEVQ 597 (700)
T ss_dssp ECCSSHHHHHHHHHHHHTTTTCSSCEEEECCSSEECC--CTTCCHHHHHHSC-EEEECCSCCCTTCCCSEEEEECGGGHH
T ss_pred EeCCCHHHHHHHHHHHHHccCCCCCEEEEeccccCCC--cCcccccccCCCc-EEEecCCccccCCCCCEEEEEechHHH
Confidence 999999999999999998656 79999999987543 2221135677888 7999997 999999999999
Q ss_pred HHHHHHHHHHhCCCCeEEeecCccccccH---HHHHHHhcc-CCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEE
Q 004968 601 NCLKARALLSKLGIDVTVADARFCKPLDI---KLVRELCQN-HTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPI 676 (721)
Q Consensus 601 ~al~Aa~~L~~~Gi~v~VId~~~l~PlD~---e~i~~l~~~-~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~ 676 (721)
.|++|++.|+++||+++|||+||++|||. +.+.+++++ ++.+|+||++...||. +++.+++ +.+
T Consensus 598 ~al~Aa~~L~~~Gi~~~VVd~~~i~p~D~~~~~~~~~v~~~~~~~~vtvEe~~~~G~~----~~~~~~~--------~~i 665 (700)
T 3rim_A 598 LAVAAQTLLADNDILARVVSMPCLEWFEAQPYEYRDAVLPPTVSARVAVEAGVAQCWH----QLVGDTG--------EIV 665 (700)
T ss_dssp HHHHHHHHHHTTTCCEEEEECSCHHHHHHSCHHHHHHHSCTTCCCEEEECSSCSGGGH----HHHCTTC--------EEE
T ss_pred HHHHHHHHHHhcCCCeEEEEeccccccCcccHHHHHHHhcccceEEEEEeCCCchhHH----HHHhcCC--------cEE
Confidence 99999999999999999999999999999 455566664 7889999999876664 4444332 578
Q ss_pred ecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhh
Q 004968 677 VLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 711 (721)
Q Consensus 677 g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 711 (721)
|+ |+|++||+.++|++++|||+++|+++|+++++
T Consensus 666 gi-d~Fg~sg~~~~l~~~~Glt~e~I~~~i~~~l~ 699 (700)
T 3rim_A 666 SI-EHYGESADHKTLFREYGFTAEAVAAAAERALD 699 (700)
T ss_dssp CC-CSCCCSSCHHHHHHHTTCSHHHHHHHHHHHHC
T ss_pred cc-CcCcCcCCHHHHHHHhCcCHHHHHHHHHHHhh
Confidence 98 99999999999999999999999999998874
|
| >3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-97 Score=859.12 Aligned_cols=542 Identities=16% Similarity=0.189 Sum_probs=459.3
Q ss_pred CHHHHHHHHHHHHHHHHHhHhc-CCCCCCCcccHHHHHHHHh---cccCC------CCcEEEecCCchH---HHHHHHhC
Q 004968 95 TIKELKQLAVEIRSELSSIVSK-TEKSLKSSLAAVELTVALH---HVFHA------PVDKILWDVGEQT---YAHKILTG 161 (721)
Q Consensus 95 ~~~~l~~la~eiR~~~~~~~~~-~~Gh~~sslg~vel~~aL~---~vf~~------p~D~iv~d~GH~~---y~h~~ltG 161 (721)
|++.++++|++||..+++++++ ++||+|++||++|++++|| +.||+ ++|+||||+||++ |++++++|
T Consensus 2 ~~~~~~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~~~~p~~~~rDrfvls~GH~s~~lYa~l~l~G 81 (663)
T 3kom_A 2 SLSIPREFSNAIRFLSIDATLKAKSGHPGMPMGMADIATVLWTKFLKHNPNNPHWINRDRFVLSNGHGSMLLYSLLHLTG 81 (663)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTSCEEEECSSSCHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhhheeeCCCCCCCCCCCeEEEeCCcccHHHHHHHHHhC
Confidence 3445688999999999999986 8999999999999999995 45764 6899999999999 99999999
Q ss_pred ch---hhhHHHHhhCC-CCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCC----------CCeEEEEEcCCCcc
Q 004968 162 RR---SLIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGK----------RECIVTVISNGTTM 227 (721)
Q Consensus 162 r~---~~~~~~r~~gg-l~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~----------~~~VvaviGDGal~ 227 (721)
++ +++.++||+++ ++|||++...++..+++|++|+++|+|+|+|+|.++++. +++|||++|||+++
T Consensus 82 ~~~~~~~l~~~r~~~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~ 161 (663)
T 3kom_A 82 YDLSIEDIKNFRQLHSKTPGHPEYGYTPGVETTTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLM 161 (663)
T ss_dssp CSCCHHHHTTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHHHH
T ss_pred CCCCHHHHHhhccCCCCCCCCCCCCCCCCcccCCcchhhHHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchhhh
Confidence 94 78999999998 469999888899999999999999999999999998764 79999999999999
Q ss_pred cchHHHHHHHhhhcCCC-EEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHH
Q 004968 228 AGQAYEAMSNAGYLDSN-MIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWA 306 (721)
Q Consensus 228 ~G~~~Ealn~A~~~~~p-livIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~ 306 (721)
+|++||||++|+++++| +|+|+|||+++ ++.+++..
T Consensus 162 eG~~~Eal~~A~~~~L~~livi~dnN~~~--------i~~~~~~~----------------------------------- 198 (663)
T 3kom_A 162 EGVSHEACSLAGTLGLNKLVAFWDDNNIS--------IDGDTKGW----------------------------------- 198 (663)
T ss_dssp SHHHHHHHHHHHHHTCTTEEEEEEECC-------------CGGGT-----------------------------------
T ss_pred hchHHHHHHHHHHhCCCeEEEEEECCCcc--------cccchhhh-----------------------------------
Confidence 99999999999999965 99999999984 23333311
Q ss_pred HHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccc
Q 004968 307 AKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQE 386 (721)
Q Consensus 307 ~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg 386 (721)
..++...+|++|||++++++||||+++|.++|+++++. .++|++||++|.||+|++++|+ ..+|||
T Consensus 199 ----------~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~A~~~-~~~P~lI~~~T~kg~G~~~~e~---~~~~Hg 264 (663)
T 3kom_A 199 ----------FSDNTPERFRAYGWHVIENVDGHDFVAIEKAINEAHSQ-QQKPTLICCKTVIGFGSPEKAG---TASVHG 264 (663)
T ss_dssp ----------CCCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHC-SSSCEEEEEECCTTTTCTTTTT---CSSTTS
T ss_pred ----------cchhHHHHHHHCCCeEEEEEcCCCHHHHHHHHHHHHhc-CCCCEEEEEecccccccCCCCC---CccccC
Confidence 01222457899999999899999999999999999873 3789999999999999999874 789999
Q ss_pred cC------------------CCC--C-----------CCC----------------------------CC----------
Q 004968 387 GA------------------SDS--N-----------SLP----------------------------FG---------- 397 (721)
Q Consensus 387 ~~------------------~f~--~-----------g~~----------------------------~~---------- 397 (721)
.+ ||. + |+. .+
T Consensus 265 ~~l~~e~~~~~~~~l~~~~~pf~~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~ 344 (663)
T 3kom_A 265 SPLSDQERASAAKELNWDYQAFEIPQDVYKYWDAREKGQALEANWQGQRNLFKDSPKFDEFERVLSKELPVGLESAINDY 344 (663)
T ss_dssp SCCCHHHHHHHHHHTTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHTCCCTTHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCCCCccCChhHHHHHHHHhhcchhhHHHHHHHHHhhcchHHHHHHHHhccCCCcchhhhhhhh
Confidence 74 451 1 100 00
Q ss_pred -------CCcccHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh-----HHHH-HhCCCcEeeccccHHHHHHHHHHHHh
Q 004968 398 -------NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL-----QLFQ-EKFPERYFDVGMAEQHAVTFSAGLAC 464 (721)
Q Consensus 398 -------~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l-----~~f~-~~fp~R~~d~GIaE~~~v~~AaGlA~ 464 (721)
.+..+++++++++|.++++++|+++++++|++++++. .+|+ ++||+||||+||+|++|+++|+|||+
T Consensus 345 ~~~~~~~~~~~a~r~a~~~aL~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~p~R~~d~GIaE~~~v~~a~GlA~ 424 (663)
T 3kom_A 345 IASQLSNPVKVATRKASQMVLEVLCKNMPEMFGGSADLTGSNNTNWSGSVWLNNTQEGANYLSYGVREFGMAAIMNGLSL 424 (663)
T ss_dssp HHHHHHSCCCEEHHHHHHHHHHHHHHHCTTEEEEECCC--CCSCCCTTCCBTTTCSTTCCEEECCSCHHHHHHHHHHHHH
T ss_pred hhhhhccCcchhHHHHHHHHHHHHHhhCCCEEEEecccCCCCCcccccccccccccCCCCeEecCccHHHHHHHHHHHHH
Confidence 1234678899999999999999999999999876543 3574 89999999999999999999999999
Q ss_pred C-CCeeEEEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHH
Q 004968 465 G-GLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDM 542 (721)
Q Consensus 465 ~-G~~p~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~ 542 (721)
. |++||++||++|++++++|| +++|++++||++++++.|+ +|+||+|||+++|+++||++||++|++|+|++|++.+
T Consensus 425 ~gG~~P~~~tf~~F~~~~~~~i-r~~a~~~lpvv~~~t~~g~g~G~dG~THq~~ed~a~lr~iPnl~V~~Pad~~e~~~~ 503 (663)
T 3kom_A 425 YGGIKPYGGTFLVFSDYSRNAI-RMSALMKQPVVHVMSHDSIGLGEDGPTHQPIEHVPSLRLIPNLSVWRPADTIETMIA 503 (663)
T ss_dssp HSSCEEEEEEEGGGHHHHHHHH-HHHHHTTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCCSHHHHHHH
T ss_pred cCCCEEEEEehHHHHHHHHHHH-HHHHhcCCCEEEEEeCCccccCCCCCCcCCHHHHHHHhcCCCcEEEeeCCHHHHHHH
Confidence 9 99999999999999999998 5789999999999987777 8999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCEEEEecCCCcccccCCCCCC--cceecCceEEEEe--CCcEEEEEechhhHHHHHHHHHHHhCCCCeEE
Q 004968 543 VATVASIDDRPVCFRYPRGAIVRTDLPGYRG--IPIEIGKGKVLVE--GKDVALLGYGAMVQNCLKARALLSKLGIDVTV 618 (721)
Q Consensus 543 l~~a~~~~~~P~~ir~~r~~~~~~~~p~~~~--~~~~~gk~~vl~e--G~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~V 618 (721)
+++|++..++|++||++|+..+. ++.... +.++.| .+++++ |+|++||++|++++.|++|++.|+++||+++|
T Consensus 504 l~~A~~~~~~Pv~ir~~r~~~p~--~~~~~~~~~~~~~G-~~vl~~~~g~dvtiia~G~~v~~al~Aa~~L~~~Gi~~~V 580 (663)
T 3kom_A 504 WKEAVKSKDTPSVMVLTRQNLMP--VVQTQHQVANIARG-GYLVKDNPDAKLTIVATGSEVELAVKVANEFEKKGIKLNV 580 (663)
T ss_dssp HHHHHHCSSCCEEEECCSSEECC--CCCCHHHHHHHTTT-CEEEECCTTCSCEEEECTTHHHHHHHHHHHHHHTTCCCEE
T ss_pred HHHHHHhCCCCEEEEccCccCCC--cCccccchhcccCc-eEEEEecCCCCEEEEEecHHHHHHHHHHHHHHhcCCCeEE
Confidence 99999767899999999987542 121100 234455 477888 79999999999999999999999999999999
Q ss_pred eecCccccccHHH---HHHHhccCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHc
Q 004968 619 ADARFCKPLDIKL---VRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALA 695 (721)
Q Consensus 619 Id~~~l~PlD~e~---i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~ 695 (721)
||++|++|||+++ +.+++++...+|++|++...||.+.+. | ..-..+|+ |+|+.+|+.+++++++
T Consensus 581 i~~~si~p~D~~~~~~~~~vl~~~~~~v~vE~~~~~g~~~~~g------G-----~~~~~igi-d~Fg~sg~~~~l~~~~ 648 (663)
T 3kom_A 581 ASIPCVEVFATQAHEYKKTVIKDDIPAVFVEMAQPDMWYKYMP------K-----AGGEVKGI-YSFGESAPAEDLFKRF 648 (663)
T ss_dssp EECSCHHHHHTSCHHHHHHHSCTTSCEEEECSSCCGGGGGGCC------T-----TCEEEECC-CSCCCSSCHHHHHHHH
T ss_pred EEcCcCCcccccHHHHHHHhcCCCCeEEEEecCCcccHHHHhc------c-----cCCcEEEe-cCCcCCCCHHHHHHHH
Confidence 9999999999987 344556666789999998878875431 1 22367898 9999999999999999
Q ss_pred CCCHHHHHHHHHHH
Q 004968 696 GLTGHHIAATALSL 709 (721)
Q Consensus 696 gl~~~~I~~~i~~~ 709 (721)
|||+++|+++++++
T Consensus 649 Glt~e~I~~~~~~~ 662 (663)
T 3kom_A 649 GFTVENISNIVAKY 662 (663)
T ss_dssp TCSHHHHHHHHTTT
T ss_pred CcCHHHHHHHHHhh
Confidence 99999999999764
|
| >1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-96 Score=856.78 Aligned_cols=546 Identities=21% Similarity=0.239 Sum_probs=473.8
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHHHhHhc-CCCCCCCcccHHHHHHHHh---cccC------CCCcEEEecCCchH---H
Q 004968 88 PLRLKSLTIKELKQLAVEIRSELSSIVSK-TEKSLKSSLAAVELTVALH---HVFH------APVDKILWDVGEQT---Y 154 (721)
Q Consensus 88 p~~~~~~~~~~l~~la~eiR~~~~~~~~~-~~Gh~~sslg~vel~~aL~---~vf~------~p~D~iv~d~GH~~---y 154 (721)
|.+.|+|+.++|+++|++||..+++++++ ++||+|+++|++|++++|| ++|| .++|+||||+||++ |
T Consensus 5 ~~~~~~l~~~~l~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~p~~p~~~~rDr~vls~GH~~~~lY 84 (675)
T 1itz_A 5 TLQGKAATGELLEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHVLYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQY 84 (675)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHHHH
T ss_pred hhccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCccHhHHHHHHHHHHHHhcCCcCCCCCCCCCeEEEcCcchHHHHH
Confidence 55689999999999999999999999997 8999999999999999999 4676 35899999999999 9
Q ss_pred HHHHHhCch----hhhHHHHhhCCC-CCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcC----------CCCeEEE
Q 004968 155 AHKILTGRR----SLIHTLRKKDGI-SGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKG----------KRECIVT 219 (721)
Q Consensus 155 ~h~~ltGr~----~~~~~~r~~ggl-~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g----------~~~~Vva 219 (721)
+|++++|+. +++.++||+++. +|||++.+++++.+++|++|+++|+|+|+|+|.++++ ++++|||
T Consensus 85 a~l~l~G~~~~~~~~l~~~r~~~~~~~ghp~~~~~~~~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~ 164 (675)
T 1itz_A 85 ALLHLAGYDSVKEEDLKQFRQWGSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYV 164 (675)
T ss_dssp HHHHHHTCTTCCHHHHTTTTSTTCSSCSSCCTTTCTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEE
T ss_pred HHHHHcCCCCCCHHHHHhcccCCCCCCCCCCCCCCCCeeECCccHHhHHHHHHHHHHHhhhhcccccccccCCCCCEEEE
Confidence 999999996 789999999985 8999998999999999999999999999999998876 7899999
Q ss_pred EEcCCCcccchHHHHHHHhhhcCC-CEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhcc
Q 004968 220 VISNGTTMAGQAYEAMSNAGYLDS-NMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRI 298 (721)
Q Consensus 220 viGDGal~~G~~~Ealn~A~~~~~-plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~ 298 (721)
++|||++++|++||||++|+++++ |+|+|+|||+++ ++.+++.. +
T Consensus 165 i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~--------i~~~~~~~---~----------------------- 210 (675)
T 1itz_A 165 ILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHIS--------IDGDTEIA---F----------------------- 210 (675)
T ss_dssp EECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEE--------TTEEGGGT---C-----------------------
T ss_pred EECHhHhchhHHHHHHHHHHHhCCCcEEEEEECCCcc--------CCCChhhh---c-----------------------
Confidence 999999999999999999999995 899999999983 23333210 0
Q ss_pred CcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCC-CHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCccccc
Q 004968 299 GRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGH-NIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQK 377 (721)
Q Consensus 299 g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGh-d~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~ 377 (721)
..+...+|++|||++++++||| |+++|.++++++++. .++|++||++|.||+|++++|.
T Consensus 211 -------------------~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~a~~~-~~~P~lI~~~T~kg~G~~~~~~ 270 (675)
T 1itz_A 211 -------------------TEDVSTRFEALGWHTIWVKNGNTGYDDIRAAIKEAKAV-TDKPTLIKVTTTIGFGSPNKAN 270 (675)
T ss_dssp -------------------CSCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTTTT
T ss_pred -------------------ChhHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHHC-CCCeEEEEEeeecccCcccccC
Confidence 1122457899999999899999 999999999999873 4789999999999999999874
Q ss_pred cccccccccc------------------CCCC--CC------------CC------------------------------
Q 004968 378 SEAIEKQQEG------------------ASDS--NS------------LP------------------------------ 395 (721)
Q Consensus 378 ~~~~~~~Hg~------------------~~f~--~g------------~~------------------------------ 395 (721)
+.+|||. .+|. ++ +.
T Consensus 271 ---~~~~H~~~~~~e~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 347 (675)
T 1itz_A 271 ---SYSVHGSALGAKEVEATRQNLGWPYDTFFVPEDVKSHWSRHTPEGAALEADWNAKFAEYEKKYADDAATLKSIITGE 347 (675)
T ss_dssp ---SGGGTSSCCCHHHHHHHHHHHTCCCCTTCCCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCC
T ss_pred ---cccccCCCCCHHHHHHHHHHcCCCcccccCChhHHHHHHHHHhhhhhhHHHHHHHHHHhhhhChHHHHHHHHHhccc
Confidence 7899997 3451 11 00
Q ss_pred -------------CCCCcccHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh-----HHHHH-hCCCcEeeccccHHHHH
Q 004968 396 -------------FGNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL-----QLFQE-KFPERYFDVGMAEQHAV 456 (721)
Q Consensus 396 -------------~~~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l-----~~f~~-~fp~R~~d~GIaE~~~v 456 (721)
.+.+..+++++++++|.++++++|+++++++|+++++++ ..|++ +||+||||+||+|++|+
T Consensus 348 ~p~~~~~~~~~~~~~~~~~a~r~a~~~~L~~i~~~~p~v~~~~aDl~~s~~~~~~g~~~f~~~~~~~R~id~gIaE~~~v 427 (675)
T 1itz_A 348 LPTGWVDALPKYTPESPGDATRNLSQQCLNALANVVPGLIGGSADLASSNMTLLKMFGDFQKDTAEERNVRFGVREHGMG 427 (675)
T ss_dssp CCTTGGGGSCCCCTTSCCBCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCCTTCTTCCBCCCCSCHHHHH
T ss_pred CCchhhhhhhhhccCCcchHHHHHHHHHHHHHHHhCCCEEEEeccccccccccccccccccccCCCCCeEeecccHHHHH
Confidence 001335789999999999999999999999999876554 34887 99999999999999999
Q ss_pred HHHHHHHhCC--CeeEEEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEee
Q 004968 457 TFSAGLACGG--LKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAP 533 (721)
Q Consensus 457 ~~AaGlA~~G--~~p~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~P 533 (721)
++|+|||+.| ++||++||++|+.++++|| +++|++++||++++++.|+ +|+||+|||+.+|+++++++||++|++|
T Consensus 428 ~~a~GlA~~G~~~~P~~~t~~~F~~~~~~~i-r~~a~~~lpvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~P 506 (675)
T 1itz_A 428 AICNGIALHSPGFVPYCATFFVFTDYMRGAM-RISALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLVSFRAMPNILMLRP 506 (675)
T ss_dssp HHHHHHHTTCTTCEEEEEEEGGGHHHHHHHH-HHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHSSSSCEEECC
T ss_pred HHHHHHHhcCCCCEEEEEEHHHHHHHHHHHH-HHHHhcCCCEEEEEECCccccCCCCCCcCcHHHHHHhccCCCeEEEEC
Confidence 9999999999 9999999999999999997 5689999999999987777 7899999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCEEEEecCCCcccccCCCCCCc-ceecCceEEEEe---C--CcEEEEEechhhHHHHHHHH
Q 004968 534 SDEDELVDMVATVASIDDRPVCFRYPRGAIVRTDLPGYRGI-PIEIGKGKVLVE---G--KDVALLGYGAMVQNCLKARA 607 (721)
Q Consensus 534 sd~~E~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~p~~~~~-~~~~gk~~vl~e---G--~dv~Iva~Gs~v~~al~Aa~ 607 (721)
+|++|++.+|++|++..++|++||++|+..+. ++. +.+ .+++| ++++++ | +|++||++|++++.|++|++
T Consensus 507 ad~~e~~~~l~~a~~~~~~Pv~i~~~r~~~p~--~~~-~~~~~~~~G-a~vl~~~~~G~~~dv~iva~G~~v~~al~Aa~ 582 (675)
T 1itz_A 507 ADGNETAGAYKVAVLNRKRPSILALSRQKLPH--LPG-TSIEGVEKG-GYTISDNSTGNKPDLIVMGTGSELEIAAKAAD 582 (675)
T ss_dssp CSHHHHHHHHHHHHHCTTSCEEEEECSSCBCC--CTT-CCHHHHTTS-SEEEEECCSTTCCSEEEEECGGGHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcEEEEecCCCCCC--CCC-ccccccccC-CEEEecccCCCCCCEEEEEECHHHHHHHHHHH
Confidence 99999999999999755899999999987543 222 123 46778 688888 8 89999999999999999999
Q ss_pred HHHhCCCCeEEeecCccccccHHH---HHHHhccC-CeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccc
Q 004968 608 LLSKLGIDVTVADARFCKPLDIKL---VRELCQNH-TFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYI 683 (721)
Q Consensus 608 ~L~~~Gi~v~VId~~~l~PlD~e~---i~~l~~~~-~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~ 683 (721)
.|+++||+++|||++|++|||++. +.++++++ +.+||||++..+||++.+ . .+.+++|+ |.|+
T Consensus 583 ~L~~~Gi~v~Vv~~~~~~pld~~~~~~~~~v~~~~~~~vv~vE~~~~~G~~~~~----~--------~~~~~ig~-d~fg 649 (675)
T 1itz_A 583 ELRKEGKTVRVVSFVSWELFDEQSDEYKESVLPAAVTARISIEAGSTLGWQKYV----G--------AQGKAIGI-DKFG 649 (675)
T ss_dssp HHHHTTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEECSSCCTTTHHHH----C--------SSCEEECC-CSCC
T ss_pred HHHhcCCcEEEEEeccCcccccchHHHHHHHhccCCceEEEEECCccccHHHhc----C--------CCceEEEe-CCCC
Confidence 999999999999999999999884 67777775 789999999888998643 1 13468999 9999
Q ss_pred cCCCHHHHHHHcCCCHHHHHHHHHH
Q 004968 684 EHASPTQQLALAGLTGHHIAATALS 708 (721)
Q Consensus 684 ~~g~~~~l~~~~gl~~~~I~~~i~~ 708 (721)
.+|+.+++++++|||+++|++++++
T Consensus 650 ~sg~~~~l~~~~gl~~~~I~~~i~~ 674 (675)
T 1itz_A 650 ASAPAGTIYKEYGITVESIIAAAKS 674 (675)
T ss_dssp CSSCHHHHHHHHTCSHHHHHHHHTT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHh
Confidence 9999999999999999999999864
|
| >3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-96 Score=858.59 Aligned_cols=536 Identities=19% Similarity=0.226 Sum_probs=444.1
Q ss_pred HHHHHHHHHHHHHHhHhc-CCCCCCCcccHHHHHHHHh---cccCC------CCcEEEecCCchH---HHHHHHhCch--
Q 004968 99 LKQLAVEIRSELSSIVSK-TEKSLKSSLAAVELTVALH---HVFHA------PVDKILWDVGEQT---YAHKILTGRR-- 163 (721)
Q Consensus 99 l~~la~eiR~~~~~~~~~-~~Gh~~sslg~vel~~aL~---~vf~~------p~D~iv~d~GH~~---y~h~~ltGr~-- 163 (721)
.+++|++||..+++++++ ++||+|+++|++|++++|| +.||+ ++|+||||+||++ |+|++++|++
T Consensus 45 ~~~~a~~iR~~~i~~v~~a~~GH~g~~l~~aei~~~L~~~~~~~~~~~p~~~~rDrfvls~GH~s~~lYa~l~l~G~~~~ 124 (711)
T 3uk1_A 45 TTLMANAIRALAMDAVQQANSGHPGMPMGMAEIGVALWSRHLKHNPTNPHWADRDRFVLSNGHGSMLLYSLLHLTGYDLP 124 (711)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSCCHHHHHTHHHHHHHHHHTCCCCTTCTTCTTCCEEEECSGGGHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHHhhhEeeCCCCCCCCCCCeEEEeCCcccHHHHHHHHHhCCCCC
Confidence 466999999999999986 8999999999999999996 45764 5899999999999 9999999994
Q ss_pred -hhhHHHHhhCC-CCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCC----------CCeEEEEEcCCCcccchH
Q 004968 164 -SLIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGK----------RECIVTVISNGTTMAGQA 231 (721)
Q Consensus 164 -~~~~~~r~~gg-l~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~----------~~~VvaviGDGal~~G~~ 231 (721)
+++.++||+++ ++|||+....+...+++|++|+++|+|+|+|+|.++++. +++|||++|||++++|++
T Consensus 125 ~~~l~~~r~~~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~l~eG~~ 204 (711)
T 3uk1_A 125 IEELKNFRQLHSKTPGHPEYGITPGVETTTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGIS 204 (711)
T ss_dssp HHHHHTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHH
T ss_pred HHHHHhhccccCCCCCCCCCCCCCCcccCccchhhHHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcchhhccH
Confidence 78999999998 579998777788889999999999999999999997764 789999999999999999
Q ss_pred HHHHHHhhhcCCC-EEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHH
Q 004968 232 YEAMSNAGYLDSN-MIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVD 310 (721)
Q Consensus 232 ~Ealn~A~~~~~p-livIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~ 310 (721)
||+|++|+++++| +|+|+|||+++ ++.+++..
T Consensus 205 ~Eal~~A~~~~L~~livI~dnN~~~--------i~~~~~~~--------------------------------------- 237 (711)
T 3uk1_A 205 HEACSLAGTLKLNKLIALYDDNGIS--------IDGDVVNW--------------------------------------- 237 (711)
T ss_dssp HHHHHHHHHTTCTTEEEEEEECSEE--------TTEEGGGT---------------------------------------
T ss_pred HHHHHHHHHhCCCcEEEEEECCCcc--------cccchhhh---------------------------------------
Confidence 9999999999975 99999999983 33333311
Q ss_pred HHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccccC--
Q 004968 311 EYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGA-- 388 (721)
Q Consensus 311 ~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~-- 388 (721)
..++...+|++|||++++++||||+++|.++|+++++ .++|++||++|.||+|++++| ++.+|||.+
T Consensus 238 ------~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~Al~~A~~--~~~P~lI~v~T~kG~G~~~~e---~~~~~Hg~~l~ 306 (711)
T 3uk1_A 238 ------FHDDTPKRFEAYGWNVIPNVNGHDVDAIDAAIAKAKR--SDKPSLICCKTRIGNGAATKA---GGHDVHGAPLG 306 (711)
T ss_dssp ------CCCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHTT--CSSCEEEEEEC-----------------------C
T ss_pred ------cCCCHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHh--CCCCEEEEEccccccCCCCCC---CcccccCCCCC
Confidence 0112245789999999987999999999999999987 589999999999999998776 478999974
Q ss_pred ----------------CCC--C-----------CCC------------------------------CC------------
Q 004968 389 ----------------SDS--N-----------SLP------------------------------FG------------ 397 (721)
Q Consensus 389 ----------------~f~--~-----------g~~------------------------------~~------------ 397 (721)
||. + |+. .+
T Consensus 307 ~e~~~~~~~~l~~~~~pF~~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~~p~~a~~~~~~~~~~~p~~~~~~~~~~~~ 386 (711)
T 3uk1_A 307 ADEIAKTREALGWTWAPFVIPQEVYAAWDAKEAGKRSEDDWNAAFAQYRAKYPAEAAEFERRMAGTLPADWAAKAAAIVA 386 (711)
T ss_dssp HHHHHHHHHHHTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCccCChHHHHHHHHHhccchhHHHHHHHHHHHHhhChhhHHHHHHhhccCCCchHHHHhhHhhh
Confidence 451 1 110 00
Q ss_pred -----CCcccHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh-----HHHHHh---CC---CcEeeccccHHHHHHHHHH
Q 004968 398 -----NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL-----QLFQEK---FP---ERYFDVGMAEQHAVTFSAG 461 (721)
Q Consensus 398 -----~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l-----~~f~~~---fp---~R~~d~GIaE~~~v~~AaG 461 (721)
....+++++++++|.++++++|+++++++|+++++++ ..|+++ || +||||+||+|++|+++|+|
T Consensus 387 ~~~~~~~~~atR~A~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~~~p~~~~R~~d~GIaE~~mv~~AaG 466 (711)
T 3uk1_A 387 GANERGETVATRKASQQTIEGLAAVLPELLGGSADLTGSNLTNWKASKAVRANADGPGVQWGNHINYGVREFGMSAAING 466 (711)
T ss_dssp HHHHHCCCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCEECSSSSSEECCSEEECCSCHHHHHHHHHH
T ss_pred hhhccccchhHHHHHHHHHHHHHhhCCCEEEEeccccCcCCcccccchhhhhhhccCCCCCCcEEEeCccHHHHHHHHHH
Confidence 1223567888899999999999999999999876543 478888 99 9999999999999999999
Q ss_pred HHh-CCCeeEEEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHH
Q 004968 462 LAC-GGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDEL 539 (721)
Q Consensus 462 lA~-~G~~p~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~ 539 (721)
||+ .|++||+++|++|++|+++|| +++|++++||++++++.|+ +|+||+|||+++|+++||++|||+|++|+|++|+
T Consensus 467 lA~~~G~~Pv~~~f~~F~~~~~~~i-r~~a~~~lpv~~v~thdg~gvG~dG~THq~~ed~a~lr~iPnl~V~~Pad~~E~ 545 (711)
T 3uk1_A 467 LVLHGGYKPFGGTFLTFSDYSRNAL-RVAALMKVPSIFVFTHDSIGLGEDGPTHQSVEHVASLRLIPNLDVWRPADTVET 545 (711)
T ss_dssp HHHHSSCEEEEEEEGGGHHHHHHHH-HHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHH
T ss_pred HHHcCCCEEEEEEhHHHHHHHHHHH-HHhhhcCCCEEEEEECCCcCcCCCCCccCChhHHHHHhcCCCCEEEecCCHHHH
Confidence 999 599999999999999999998 5689999999999988877 7999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCEEEEecCCCcccccCCCCC--CcceecCceEEEEe--C----CcEEEEEechhhHHHHHHHHHHHh
Q 004968 540 VDMVATVASIDDRPVCFRYPRGAIVRTDLPGYR--GIPIEIGKGKVLVE--G----KDVALLGYGAMVQNCLKARALLSK 611 (721)
Q Consensus 540 ~~~l~~a~~~~~~P~~ir~~r~~~~~~~~p~~~--~~~~~~gk~~vl~e--G----~dv~Iva~Gs~v~~al~Aa~~L~~ 611 (721)
+.+|++|++ .++|++||++|+..+. ++... .+.++.|+ +++++ | +|++||++|++++.|++|++.|++
T Consensus 546 ~~~l~~Ai~-~~~Pv~ir~~r~~~p~--~~~~~~~~~~i~~G~-~vl~~~~G~~~~~dvtiia~G~~v~~al~Aa~~L~~ 621 (711)
T 3uk1_A 546 AVAWTYAVA-HQHPSCLIFSRQNLAF--NARTDAQLANVEKGG-YVLRDWDEEIVARKIILIATGSEVELAMKAVEPLAQ 621 (711)
T ss_dssp HHHHHHHHH-SSSCEEEECCSSEECC--CCCCHHHHHHGGGSS-EEEECCCSSCCSEEEEEEECTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-cCCCEEEEeeCCCCCC--CCCccccccccCCCe-EEEEecCCCCCCCCEEEEEecHHHHHHHHHHHHHHH
Confidence 999999997 7899999999987543 22111 13566776 57775 7 799999999999999999999999
Q ss_pred CCCCeEEeecCccccccHHH--HHH-HhccCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCH
Q 004968 612 LGIDVTVADARFCKPLDIKL--VRE-LCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASP 688 (721)
Q Consensus 612 ~Gi~v~VId~~~l~PlD~e~--i~~-l~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~ 688 (721)
+||+++|||++|++|||++. +++ +.++...+|++|++..+||++++ .. +.+++|+ |+|+.+|+.
T Consensus 622 ~GI~~~Vid~~si~plD~~~~~~~~sv~~~~~~~V~vE~~~~~g~~~~~----g~--------~~~~iGi-d~Fg~sg~~ 688 (711)
T 3uk1_A 622 QGIAARVVSMPSSDVFDRQDAEYRERVLPHGVRRVAIEAGVTDFWRKYV----GL--------EGGVVGI-DTFGESAPA 688 (711)
T ss_dssp TTEEEEEEECSCHHHHHTSCHHHHHHHSCTTSCEEEECSSCSGGGHHHH----TT--------TSEEECC-CSCCCSSCH
T ss_pred cCCCeEEEecCcCCccchhHHHHHHHhhccCCeEEEEeCCccccHHHHh----CC--------CceEEEe-CCCcCcCCH
Confidence 99999999999999999886 344 44555569999999988897654 21 2357998 999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHh
Q 004968 689 TQQLALAGLTGHHIAATALSLL 710 (721)
Q Consensus 689 ~~l~~~~gl~~~~I~~~i~~~l 710 (721)
++|+++||||+++|++++++++
T Consensus 689 ~~L~~~~Glt~e~Iv~~~~~~l 710 (711)
T 3uk1_A 689 GVLFKHFGFTVEHVIETAKAVL 710 (711)
T ss_dssp HHHHHHTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHh
Confidence 9999999999999999999875
|
| >2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-94 Score=836.56 Aligned_cols=532 Identities=20% Similarity=0.219 Sum_probs=463.1
Q ss_pred HHHHHHHHHHHHHhHhc-CCCCCCCcccHHHHHHHHh---cccC------CCCcEEEecCCchH---HHHHHHhCc---h
Q 004968 100 KQLAVEIRSELSSIVSK-TEKSLKSSLAAVELTVALH---HVFH------APVDKILWDVGEQT---YAHKILTGR---R 163 (721)
Q Consensus 100 ~~la~eiR~~~~~~~~~-~~Gh~~sslg~vel~~aL~---~vf~------~p~D~iv~d~GH~~---y~h~~ltGr---~ 163 (721)
+++|++||..+++++++ ++||+|+++|+++++++|| ++|| .++|+||||+||++ |+|++++|+ .
T Consensus 9 ~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~p~~p~~~~rDr~vls~GH~~~~lYa~l~l~G~~~~~ 88 (651)
T 2e6k_A 9 TLSVNAIRFLAIDAVEKARSGHPGMPMGMAPLAYLLFREVMRHNPLDPDWPDRDRFVLSAGHGSMLLYAVLHLTGYDLPL 88 (651)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHTTCCCCTTCTTCTTSCEEEESSGGGHHHHHHHHHHTTCSCCH
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCcchhHHHHHHHHHHHHhcCCccCCCCCCCCeEEEeCcchhHHHHHHHHHhCCCCCH
Confidence 35899999999999997 8999999999999999999 4566 35899999999999 999999999 8
Q ss_pred hhhHHHHhhCCC-CCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcC----------CCCeEEEEEcCCCcccchHH
Q 004968 164 SLIHTLRKKDGI-SGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKG----------KRECIVTVISNGTTMAGQAY 232 (721)
Q Consensus 164 ~~~~~~r~~ggl-~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g----------~~~~VvaviGDGal~~G~~~ 232 (721)
+++.++||+++. +|||++.+++++.+++|++|+++|+|+|+|+|.++++ .+++|||++|||++++|++|
T Consensus 89 ~~l~~~r~~~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~ 168 (651)
T 2e6k_A 89 EELKSFRQWGSKTPGHPERGHTPGVEVTTGPLGQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGDLMEGVSG 168 (651)
T ss_dssp HHHTTTTSTTCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHH
T ss_pred HHHHHhhccCCCCCCCCCCCCCCCeeeccccccchHHHHHHHHHHHHhhcccccccccCCCCCEEEEEEChhhhchhHHH
Confidence 899999999985 8999998899999999999999999999999998776 68999999999999999999
Q ss_pred HHHHHhhhcCCC-EEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHH
Q 004968 233 EAMSNAGYLDSN-MIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDE 311 (721)
Q Consensus 233 Ealn~A~~~~~p-livIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~ 311 (721)
|+||+|+.+++| +|+|+|||+++ ++.+++.. +
T Consensus 169 Eal~~A~~~~L~~li~i~~nN~~~--------i~~~~~~~---~------------------------------------ 201 (651)
T 2e6k_A 169 EAASLAGHWGLSKLIVFWDDNRIS--------IDGPTDLA---F------------------------------------ 201 (651)
T ss_dssp HHHHHHHHTTCTTEEEEEEECCEE--------TTEEGGGT---C------------------------------------
T ss_pred HHHHHHHHcCCCeEEEEEECCCcc--------cccccccc---c------------------------------------
Confidence 999999999965 99999999983 23333210 0
Q ss_pred HhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccccC---
Q 004968 312 YARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGA--- 388 (721)
Q Consensus 312 ~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~--- 388 (721)
..+...+|++|||++++++||||+++|.++++++++ .++|++||++|.||+|++ .+ ++.+||+.+
T Consensus 202 ------~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~--~~~P~lI~~~t~kg~G~~-~~---~~~~~H~~~~~~ 269 (651)
T 2e6k_A 202 ------TEDVLARYRAYGWQTLRVEDVNDLEALRKAIKLAKL--DERPTLIAVRSHIGFGSP-KQ---DSAKAHGEPLGP 269 (651)
T ss_dssp ------CSCHHHHHHHTTCEEEEESCTTCHHHHHHHHHHHHH--SSSCEEEEEECCTTTTST-TT---TSGGGTSSCCHH
T ss_pred ------CccHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHH--CCCCEEEEEEeEeccccc-cc---ccccccccCCCH
Confidence 112245789999999989999999999999999987 589999999999999998 55 578999875
Q ss_pred ---------------CC--CCC------C-----------------------------------CCC---------CCcc
Q 004968 389 ---------------SD--SNS------L-----------------------------------PFG---------NYSR 401 (721)
Q Consensus 389 ---------------~f--~~g------~-----------------------------------~~~---------~~~~ 401 (721)
+| .++ + ..+ ....
T Consensus 270 ~e~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 349 (651)
T 2e6k_A 270 EAVEATRRNLGWPYPPFVVPEEVYRHMDMREKGRAWQEAWEKALEAYARAYPDLHQELMRRLRGELPPLPEEPPSFDKPI 349 (651)
T ss_dssp HHHHHHHHHHTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCCCCCSCCCCCSCB
T ss_pred HHHHHHHHHcCCCcccccCChHHHHHHHHhhhchhhHHHHHHHHHHhhhhChHHHHHHHHHhcCcCCchhhhccccCccH
Confidence 45 111 0 000 0145
Q ss_pred cHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh-----HHHHH-hCCCcEeeccccHHHHHHHHHHHHhCC-CeeEEEec
Q 004968 402 TYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL-----QLFQE-KFPERYFDVGMAEQHAVTFSAGLACGG-LKPFCIIP 474 (721)
Q Consensus 402 ~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l-----~~f~~-~fp~R~~d~GIaE~~~v~~AaGlA~~G-~~p~~~ty 474 (721)
+++++++++|.++++++|+++++++|+++++++ ..|++ +||+||||+||+|++|+++|+|+|+.| ++||++||
T Consensus 350 ~~r~a~~~~L~~~~~~~p~~~~~~aDl~~s~~~~~~~~~~f~~~~~p~R~i~~gIaE~~~~~~a~GlA~~Gg~~P~~~t~ 429 (651)
T 2e6k_A 350 ATRAASGRALNLLAPRLPELLGGSADLTPSNNTKAEGMEDFSRANPLGRYLHFGVREHAMGAILNGLNLHGGYRAYGGTF 429 (651)
T ss_dssp CHHHHHHHHHHHHGGGCTTEEEEESSCHHHHTCSCTTCCBCBTTBTTCCEEECCSCHHHHHHHHHHHHHHSSCEEEEEEE
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEeCccccccccccccccccCccCCCCceEecCcCHHHHHHHHHHHHHcCCCEEEEEeH
Confidence 789999999999999999999999999877654 45887 999999999999999999999999998 99999999
Q ss_pred HhhHHHHHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCC
Q 004968 475 SAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRP 553 (721)
Q Consensus 475 s~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P 553 (721)
++|+.++++|| +++|++++||++++++.|+ +|+||+|||+.+|++++|++||++|++|+|++|++.++++|++..++|
T Consensus 430 ~~F~~~~~~ai-r~~a~~~lpvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~E~~~~l~~A~~~~~~P 508 (651)
T 2e6k_A 430 LVFSDYMRPAI-RLAALMGVPTVFVFTHDSIALGEDGPTHQPVEHLMSLRAMPNLFVIRPADAYETFYAWLVALRRKEGP 508 (651)
T ss_dssp GGGGGGSHHHH-HHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHHCCSSC
T ss_pred HHHHHHHHHHH-HHHHhcCCCEEEEEECCccccCCCcCccccHHHHHHhcCCCCcEEEecCCHHHHHHHHHHHHHcCCCC
Confidence 99998888986 6789999999999977777 799999999999999999999999999999999999999999855899
Q ss_pred EEEEecCCCcccccCCCCCCcceecCceEEEEeC--CcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHH
Q 004968 554 VCFRYPRGAIVRTDLPGYRGIPIEIGKGKVLVEG--KDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKL 631 (721)
Q Consensus 554 ~~ir~~r~~~~~~~~p~~~~~~~~~gk~~vl~eG--~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~ 631 (721)
++||++|+..+. ++......++.| ++++++| +|++||++|++++.|++|++.|+++||+++|||++|++|||++.
T Consensus 509 v~i~~~r~~~~~--~~~~~~~~~~~G-~~vl~~g~~~dv~iva~G~~v~~al~Aa~~L~~~Gi~~~Vv~~~~~~p~d~~~ 585 (651)
T 2e6k_A 509 TALVLTRQAVPL--LSPEKARGLLRG-GYVLEDVEEPQGVLVATGSEVHLALRAQALLREKGVRVRVVSLPSFELFAAQP 585 (651)
T ss_dssp EEEECCSSCBCC--CCHHHHGGGGGS-SEEEECCSSCSEEEEECTTHHHHHHHHHHHHHHTTCCEEEEECSCHHHHHTSC
T ss_pred EEEEEeCCCCCC--CCcchhhhhcCC-CEEEeeCCCCCEEEEEECHHHHHHHHHHHHHHhcCCcEEEEecCcCCcccccc
Confidence 999999987542 221111135566 5788988 89999999999999999999999999999999999999999984
Q ss_pred ---HHHHhccCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHH
Q 004968 632 ---VRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALS 708 (721)
Q Consensus 632 ---i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~ 708 (721)
+.+++++++.+||||++..+||++++ + +++|+ |.|+++|+.+++++++|||+++|++++++
T Consensus 586 ~~~~~~v~~~~~~vv~vE~~~~~G~~~~v--------------~-~~ig~-d~f~~sg~~~~l~~~~gl~~~~I~~~i~~ 649 (651)
T 2e6k_A 586 EAYRKEVLPPGLPVVAVEAGASLGWERYA--------------H-KVVAL-DRFGASAPYPEVYERLGFTPERVAEAFLS 649 (651)
T ss_dssp HHHHHHHSCTTSCEEEECSSCCTTGGGTC--------------S-EEECC-CSCCCSCCTTHHHHHTTCCHHHHHHHHHT
T ss_pred HHHHHHHhCcCCeEEEEeCCccCchHHhC--------------C-CEEEe-CCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 77777777789999999888887543 2 67999 99999999999999999999999999986
Q ss_pred Hh
Q 004968 709 LL 710 (721)
Q Consensus 709 ~l 710 (721)
++
T Consensus 650 ~l 651 (651)
T 2e6k_A 650 LV 651 (651)
T ss_dssp TC
T ss_pred hC
Confidence 53
|
| >2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-93 Score=837.55 Aligned_cols=539 Identities=18% Similarity=0.220 Sum_probs=465.1
Q ss_pred HHHHHHHHHHHHHHhHhc-CCCCCCCcccHHHHHHHHhc---ccCC------CCcEEEecCCchH---HHHHHHhCc---
Q 004968 99 LKQLAVEIRSELSSIVSK-TEKSLKSSLAAVELTVALHH---VFHA------PVDKILWDVGEQT---YAHKILTGR--- 162 (721)
Q Consensus 99 l~~la~eiR~~~~~~~~~-~~Gh~~sslg~vel~~aL~~---vf~~------p~D~iv~d~GH~~---y~h~~ltGr--- 162 (721)
|+++|++||..+++++++ ++||+|+++|+++++++||+ .||+ ++|+||||+||++ |+|++|+|+
T Consensus 4 ~~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~~~~lYa~~~l~G~~~~ 83 (669)
T 2r8o_A 4 RKELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRDRFVLSNGHGSMLIYSLLHLTGYDLP 83 (669)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccCCchhHHHHHHHHHHHhhcCCcCCCCCCCCCeEEEeCccHHHHHHHHHHHcCCCCC
Confidence 678999999999999996 89999999999999999994 4663 5899999999999 999999999
Q ss_pred hhhhHHHHhhCCC-CCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcC----------CCCeEEEEEcCCCcccchH
Q 004968 163 RSLIHTLRKKDGI-SGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKG----------KRECIVTVISNGTTMAGQA 231 (721)
Q Consensus 163 ~~~~~~~r~~ggl-~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g----------~~~~VvaviGDGal~~G~~ 231 (721)
.+++.++||+++. +|||++.+++++.+++|++|+++|+|+|+|+|.++++ .+++|||++|||++++|++
T Consensus 84 ~~~l~~~r~~~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~~~GDG~~~eG~~ 163 (669)
T 2r8o_A 84 MEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGIS 163 (669)
T ss_dssp HHHHTTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHH
T ss_pred HHHHHHhhcCCCCCCCCCCccCCCCcccccccccchHHHHHHHHHHHHHhccccccCccCCcCCeEEEEECHhHhcchHH
Confidence 8899999999985 8999988899999999999999999999999998765 4889999999999999999
Q ss_pred HHHHHHhhhcCCC-EEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHH
Q 004968 232 YEAMSNAGYLDSN-MIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVD 310 (721)
Q Consensus 232 ~Ealn~A~~~~~p-livIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~ 310 (721)
|||||+|+.+++| +|+|+|||+++ ++.+++..
T Consensus 164 ~Eal~~A~~~~L~~li~i~~nN~~~--------i~~~~~~~--------------------------------------- 196 (669)
T 2r8o_A 164 HEVCSLAGTLKLGKLIAFYDDNGIS--------IDGHVEGW--------------------------------------- 196 (669)
T ss_dssp HHHHHHHHHTTCTTEEEEEEECSEE--------TTEEGGGT---------------------------------------
T ss_pred HHHHHHHHHcCCCcEEEEEECCCcE--------eccccccc---------------------------------------
Confidence 9999999999965 99999999983 22232200
Q ss_pred HHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCccccccccccccccc---
Q 004968 311 EYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEG--- 387 (721)
Q Consensus 311 ~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~--- 387 (721)
+..+...+|++|||++++++||||+++|.++++++++. .++|++||++|.||+|+++.+ +..+||+.
T Consensus 197 ------~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~~-~~~P~lI~~~T~kg~G~~~~~---~~~~~H~~~~~ 266 (669)
T 2r8o_A 197 ------FTDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARAV-TDKPSLLMCKTIIGFGSPNKA---GTHDSHGAPLG 266 (669)
T ss_dssp ------CCCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTTT---TSGGGTSSCCC
T ss_pred ------cCccHHHHHHHCCCeEEeEECCCCHHHHHHHHHHHHhc-CCCCEEEEEEeEeccCcCCcC---CCCcccCCCCC
Confidence 00122457899999999899999999999999999873 478999999999999999866 47899987
Q ss_pred ---------------CCC--CCC-----------C------------------------------CC-------------
Q 004968 388 ---------------ASD--SNS-----------L------------------------------PF------------- 396 (721)
Q Consensus 388 ---------------~~f--~~g-----------~------------------------------~~------------- 396 (721)
.+| .++ + .+
T Consensus 267 ~ee~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~ 346 (669)
T 2r8o_A 267 DAEIALTREQLGWKYAPFEIPSEIYAQWDAKEAGQAKESAWNEKFAAYAKAYPQEAAEFTRRMKGEMPSDFDAKAKEFIA 346 (669)
T ss_dssp HHHHHHHHHHHTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhChHHHHHHHHHhcccCChhhhhhhHHHhh
Confidence 344 110 0 00
Q ss_pred ----CCCcccHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh-----HHHHHhCCCcEeeccccHHHHHHHHHHHHhC-C
Q 004968 397 ----GNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL-----QLFQEKFPERYFDVGMAEQHAVTFSAGLACG-G 466 (721)
Q Consensus 397 ----~~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l-----~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~-G 466 (721)
..+..+++++++++|.++++.+|+++++++|+++++++ ..|+++||+||||+||+|++|+++|+|||+. |
T Consensus 347 ~~~~~~~~~~~r~a~~~~L~~l~~~~p~v~~~~aDl~~s~~~~~~~~~~f~~~~p~R~id~GIaE~~~v~~a~GlA~~gG 426 (669)
T 2r8o_A 347 KLQANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAAGNYIHYGVREFGMTAIANGISLHGG 426 (669)
T ss_dssp HHHHSCCCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCCCTTCCBTTTCTTCSEEECCSCHHHHHHHHHHHHHHSS
T ss_pred hhcCCCccHHHHHHHHHHHHHHHhhCCCeEEecCcccccccccccccccccccCCCCeeecchhHHHHHHHHHHHHHcCC
Confidence 01234678899999999999999999999999876554 4789999999999999999999999999999 8
Q ss_pred CeeEEEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 004968 467 LKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVAT 545 (721)
Q Consensus 467 ~~p~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~ 545 (721)
++||+++|++|+.++++||+ ++|++++||++++++.|+ +|+||+|||+.+|++++|++||++|++|+|++|++.++++
T Consensus 427 ~~P~~~tf~~F~~~~~~~ir-~~a~~~lpvv~~~t~~g~~~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~E~~~~l~~ 505 (669)
T 2r8o_A 427 FLPYTSTFLMFVEYARNAVR-MAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKY 505 (669)
T ss_dssp CEEEEEEEGGGGGTTHHHHH-HHHHTTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHHHHHHHH
T ss_pred CeEEEeehHHHHHHHHHHHH-HHHhcCCCEEEEEeCCCcCcCCCCCccCCHHHHHHhcCCCCCEEEecCCHHHHHHHHHH
Confidence 99999999999999999985 589999999999988777 7999999999999999999999999999999999999999
Q ss_pred HHHhCCCCEEEEecCCCcccccCCCCCC--cceecCceEEEEe--C-CcEEEEEechhhHHHHHHHHHHHhCCCCeEEee
Q 004968 546 VASIDDRPVCFRYPRGAIVRTDLPGYRG--IPIEIGKGKVLVE--G-KDVALLGYGAMVQNCLKARALLSKLGIDVTVAD 620 (721)
Q Consensus 546 a~~~~~~P~~ir~~r~~~~~~~~p~~~~--~~~~~gk~~vl~e--G-~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId 620 (721)
|++..++|++||++|+..+. ++.... ..+++| .+++++ | +|++||++|++++.|++|++.|+++||+++|||
T Consensus 506 a~~~~~~Pv~i~~~r~~~~~--~~~~~~~~~~~~~G-~~vl~~~~g~~dv~iva~G~~v~~al~Aa~~L~~~Gi~~~Vv~ 582 (669)
T 2r8o_A 506 GVERQDGPTALILSRQNLAQ--QERTEEQLANIARG-GYVLKDCAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVS 582 (669)
T ss_dssp HHHCSSSCEEEECCSSEECC--CCCCHHHHHHGGGS-CEEEECCSSSCSEEEEECGGGHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHhCCCcEEEEeCCCCCCC--CCCccchhhhccCC-CEEEeccCCCCCEEEEEECHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 99855899999999987542 232110 125677 478888 8 899999999999999999999999999999999
Q ss_pred cCccccccHHH---HHHHhccC-CeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcC
Q 004968 621 ARFCKPLDIKL---VRELCQNH-TFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAG 696 (721)
Q Consensus 621 ~~~l~PlD~e~---i~~l~~~~-~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~g 696 (721)
++|++|||++. +.++++++ +.+|+||++..+||++ ++.+++ ..+|+ |.|+.+|+++++++++|
T Consensus 583 ~~~~~pld~~~~~~~~~v~~~~~~~vv~vE~~~~~g~~~----~~~~~~--------~~ig~-d~fg~sg~~~~l~~~~G 649 (669)
T 2r8o_A 583 MPSTDAFDKQDAAYRESVLPKAVTARVAVEAGIADYWYK----YVGLNG--------AIVGM-TTFGESAPAELLFEEFG 649 (669)
T ss_dssp CSCHHHHHTSCHHHHHHHSCTTCCCEEEEEEEEGGGGHH----HHTTSS--------EEEEE-CSCCCSSCHHHHHHHTT
T ss_pred eccCCccccchHHHHHHhccccCceEEEEeCCchhhHHH----HhcCCC--------eEEEc-CCCCCcCCHHHHHHHhC
Confidence 99999999884 77777774 7899999998888985 333322 46888 79999999999999999
Q ss_pred CCHHHHHHHHHHHhh
Q 004968 697 LTGHHIAATALSLLG 711 (721)
Q Consensus 697 l~~~~I~~~i~~~l~ 711 (721)
||+++|++++++++-
T Consensus 650 l~~~~I~~~~~~~~~ 664 (669)
T 2r8o_A 650 FTVDNVVAKAKELLH 664 (669)
T ss_dssp CSHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999999874
|
| >1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-93 Score=833.70 Aligned_cols=536 Identities=18% Similarity=0.204 Sum_probs=463.7
Q ss_pred HHHH-HHHHHHHHHHHhHhc-CCCCCCCcccHHHHHHHHhc--ccCC------CCcEEEecCCchH---HHHHHHhCc--
Q 004968 98 ELKQ-LAVEIRSELSSIVSK-TEKSLKSSLAAVELTVALHH--VFHA------PVDKILWDVGEQT---YAHKILTGR-- 162 (721)
Q Consensus 98 ~l~~-la~eiR~~~~~~~~~-~~Gh~~sslg~vel~~aL~~--vf~~------p~D~iv~d~GH~~---y~h~~ltGr-- 162 (721)
+|++ +|++||..+++++++ ++||+|+++|++|++++||+ +||+ ++|+||||+||++ |+|++++|+
T Consensus 6 ~l~~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~~~p~~~~rDr~v~s~GH~~~~lYa~~~l~G~~~ 85 (680)
T 1gpu_A 6 DIDKLAVSTIRILAVDTVSKANSGHPGAPLGMAPAAHVLWSQMRMNPTNPDWINRDRFVLSNGHAVALLYSMLHLTGYDL 85 (680)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccCCchhHHHHHHHHHHhCCCCccCCCCCCCCEEEEecchHHHHHHHHHHHhCCCC
Confidence 7888 999999999999997 89999999999999999997 7874 5899999999999 999999999
Q ss_pred -hhhhHHHHhhCCC-CCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcC----------CCCeEEEEEcCCCcccch
Q 004968 163 -RSLIHTLRKKDGI-SGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKG----------KRECIVTVISNGTTMAGQ 230 (721)
Q Consensus 163 -~~~~~~~r~~ggl-~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g----------~~~~VvaviGDGal~~G~ 230 (721)
.+++.++||+++. +|||++ +++++.+++|++|+++|+|+|+|+|.++++ .+++|||++|||++++|+
T Consensus 86 ~~~~l~~~r~~g~~~~ghp~~-~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~~~eG~ 164 (680)
T 1gpu_A 86 SIEDLKQFRQLGSRTPGHPEF-ELPGVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGI 164 (680)
T ss_dssp CHHHHTTTTCTTCSCCSSCCT-TSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHH
T ss_pred CHHHHHhhcccCCCCCCCCCc-cCCCeeeccccccchHHHHHHHHHHHHHhccccccCccCCCCCeEEEEECCCccchhh
Confidence 8899999999985 899999 899999999999999999999999998775 488999999999999999
Q ss_pred HHHHHHHhhhcCCC-EEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHH
Q 004968 231 AYEAMSNAGYLDSN-MIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKV 309 (721)
Q Consensus 231 ~~Ealn~A~~~~~p-livIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~ 309 (721)
+||+||+|+.+++| +|+|+|||+++ ++.+++..
T Consensus 165 ~~Eal~~A~~~~L~~li~i~~nN~~~--------i~~~~~~~-------------------------------------- 198 (680)
T 1gpu_A 165 SSEASSLAGHLKLGNLIAIYDDNKIT--------IDGATSIS-------------------------------------- 198 (680)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEECSEE--------TTEEGGGT--------------------------------------
T ss_pred HHHHHHHHHHhCCCcEEEEEECCCce--------Eecccccc--------------------------------------
Confidence 99999999999965 99999999983 22222200
Q ss_pred HHHhhcccCCCccceeeeeCceEEeccCCC-CHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccccC
Q 004968 310 DEYARGMIGPQGSTLFEELGLYYIGPVDGH-NIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGA 388 (721)
Q Consensus 310 ~~~~~~~~~~~~~~l~ea~G~~~~g~vdGh-d~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~ 388 (721)
+..+...+|++|||++++++||| |+++|.++++++++. .++|++||++|.||+|++ .+ +..+||+..
T Consensus 199 -------~~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~A~~~-~~~P~lI~~~T~kg~G~~-~~---~~~~~H~~~ 266 (680)
T 1gpu_A 199 -------FDEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLS-KDKPTLIKMTTTIGYGSL-HA---GSHSVHGAP 266 (680)
T ss_dssp -------CCCCHHHHHHHHTCEEEEESCTTTCHHHHHHHHHHHHHC-TTSCEEEEEECCTTTTST-TT---TSGGGSSSC
T ss_pred -------cCccHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHC-CCCCEEEEEEeecccccc-cC---CCCccCCCC
Confidence 01122457899999999899999 999999999999873 478999999999999998 44 467899875
Q ss_pred -------------------CC--CCC-------------CC---------------------------------------
Q 004968 389 -------------------SD--SNS-------------LP--------------------------------------- 395 (721)
Q Consensus 389 -------------------~f--~~g-------------~~--------------------------------------- 395 (721)
+| .++ +.
T Consensus 267 ~~~ee~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~p~~~~~~~ 346 (680)
T 1gpu_A 267 LKADDVKQLKSKFGFNPDKSFVVPQEVYDHYQKTILKPGVEANNKWNKLFSEYQKKFPELGAELARRLSGQLPANWESKL 346 (680)
T ss_dssp CCHHHHHHHHHHTTCCTTCCSCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCTTGGGGS
T ss_pred CCHHHHHHHHHHcCCCcCCCccCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhChHHHHHHHHHhcccCCchhhhhc
Confidence 44 111 00
Q ss_pred ----CCCCcccHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh-----HHHHH------hCCCcEeeccccHHHHHHHHH
Q 004968 396 ----FGNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL-----QLFQE------KFPERYFDVGMAEQHAVTFSA 460 (721)
Q Consensus 396 ----~~~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l-----~~f~~------~fp~R~~d~GIaE~~~v~~Aa 460 (721)
.+.+..+++++++++|.++++++|+++++++|+++++++ ..|++ +||+||||+||+|++|+++|+
T Consensus 347 ~~~~~~~~~~a~r~a~~~~L~~~~~~~p~v~~~~aDl~~s~~~~~~g~~~f~~~~~~~~~~p~R~~d~gIaE~~~vg~a~ 426 (680)
T 1gpu_A 347 PTYTAKDSAVATRKLSETVLEDVYNQLPELIGGSADLTPSNLTRWKEALDFQPPSSGSGNYSGRYIRYGIREHAMGAIMN 426 (680)
T ss_dssp CCCCTTSCCBCHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEECCTTTSSEETTCCEEECCSCHHHHHHHHH
T ss_pred hhhccCCcchHHHHHHHHHHHHHHhhCCCEEEEecccccccccccccccccccccccccCCCCceecCCccHHHHHHHHH
Confidence 001235688999999999999999999999999876543 46887 999999999999999999999
Q ss_pred HHHhCC-Ce-eEEEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHH
Q 004968 461 GLACGG-LK-PFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDED 537 (721)
Q Consensus 461 GlA~~G-~~-p~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~ 537 (721)
|||+.| ++ ||+++|++|+.++++|| +++|++++||++++++.|+ +|+||+|||+.+|+++||++||++|++|+|++
T Consensus 427 GlA~~Gg~~~P~~~~f~~F~~~~~~ai-r~~a~~~lpvv~v~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~ 505 (680)
T 1gpu_A 427 GISAFGANYKPYGGTFLNFVSYAAGAV-RLSALSGHPVIWVATHDSIGVGEDGPTHQPIETLAHFRSLPNIQVWRPADGN 505 (680)
T ss_dssp HHHHHCTTCEEEEEEEHHHHGGGHHHH-HHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSSSCEEECCCSHH
T ss_pred HHHhcCCCceEEEeehHHHHHHHHHHH-HHHHhcCCCEEEEEeCCccccCCCCCccCCHHHHHHhcCCCCCEEEecCCHH
Confidence 999998 99 99999999999999997 5689999999999988777 79999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCCCcccccCCCCCCcc-eecCceEEEEeC--CcEEEEEechhhHHHHHHHHHHHhCCC
Q 004968 538 ELVDMVATVASIDDRPVCFRYPRGAIVRTDLPGYRGIP-IEIGKGKVLVEG--KDVALLGYGAMVQNCLKARALLSKLGI 614 (721)
Q Consensus 538 E~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~p~~~~~~-~~~gk~~vl~eG--~dv~Iva~Gs~v~~al~Aa~~L~~~Gi 614 (721)
|++.+|++|++..++|++||++|+..+. ++.. .+. +++| ++++++| +|++||++|++++.|++|++.|+++||
T Consensus 506 e~~~~l~~A~~~~~~Pv~i~~~r~~~~~--~~~~-~~~~~~~G-~~vl~~g~~~dvtiva~G~~v~~al~Aa~~L~~~Gi 581 (680)
T 1gpu_A 506 EVSAAYKNSLESKHTPSIIALSRQNLPQ--LEGS-SIESASKG-GYVLQDVANPDIILVATGSEVSLSVEAAKTLAAKNI 581 (680)
T ss_dssp HHHHHHHHHHHCSSCCEEEECCSSCBCC--CTTC-CHHHHTTS-CEEEECCSSCSEEEEECTHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhCCCcEEEEecCCCCCC--CCCc-chhhccCC-CEEEecCCCCCEEEEEEcHHHHHHHHHHHHHHhcCC
Confidence 9999999999755899999999987543 2222 233 6677 4889998 899999999999999999999999999
Q ss_pred CeEEeecCccccccHH---HHHHHhccC-CeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHH
Q 004968 615 DVTVADARFCKPLDIK---LVRELCQNH-TFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQ 690 (721)
Q Consensus 615 ~v~VId~~~l~PlD~e---~i~~l~~~~-~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~ 690 (721)
+++|||++|++|||++ .+.++++++ +. |+||++..+||+++| + .. +++ |.|+.+|+.++
T Consensus 582 ~~~Vvd~~~l~pld~~~~~~~~sv~~~~~~~-v~vE~~~~~g~~~~v-------~-------~~-~gv-~~f~~~g~~~~ 644 (680)
T 1gpu_A 582 KARVVSLPDFFTFDKQPLEYRLSVLPDNVPI-MSVEVLATTCWGKYA-------H-------QS-FGI-DRFGASGKAPE 644 (680)
T ss_dssp CEEEEECSCHHHHHHSCHHHHHHHSCSSSCE-EEECSSCSTTGGGTC-------S-------EE-ECC-CSCCCCSCHHH
T ss_pred CEEEEEcCCCCcchhhhHHHHHHHhccCCce-EEEeCCccccHHHhc-------C-------cc-eee-CcCCCCCCHHH
Confidence 9999999999999998 466666664 55 999999888887543 1 12 787 89999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHhhcch
Q 004968 691 QLALAGLTGHHIAATALSLLGRTR 714 (721)
Q Consensus 691 l~~~~gl~~~~I~~~i~~~l~~~~ 714 (721)
+++++|+|+++|+++|+++++..+
T Consensus 645 l~~~~gl~~~~I~~~i~~~l~~~~ 668 (680)
T 1gpu_A 645 VFKFFGFTPEGVAERAQKTIAFYK 668 (680)
T ss_dssp HHHHTTCSHHHHHHHHHHHHHHHT
T ss_pred HHHHHCcCHHHHHHHHHHHHHhhc
Confidence 999999999999999999985443
|
| >2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-90 Score=823.37 Aligned_cols=602 Identities=15% Similarity=0.136 Sum_probs=478.3
Q ss_pred CccccccCCCccccCCCCHHHHH-HHHHHHHHHHHHhHhc-C------CCCCCCcccHHHHHHHHhcc-cCC-----CCc
Q 004968 78 PTPILDLVENPLRLKSLTIKELK-QLAVEIRSELSSIVSK-T------EKSLKSSLAAVELTVALHHV-FHA-----PVD 143 (721)
Q Consensus 78 ~~~~l~~i~~p~~~~~~~~~~l~-~la~eiR~~~~~~~~~-~------~Gh~~sslg~vel~~aL~~v-f~~-----p~D 143 (721)
.||+|++|+.|++.+.....+|+ ++|++||..++.++++ + +||+++++|++|++.+||++ |+. ++|
T Consensus 56 ~~~~l~~i~~~~~~~~p~d~~l~~~la~~iR~~~i~~v~~a~~~~~~~gGH~gs~ls~ael~~~l~~~~~~~~~~~~~~D 135 (886)
T 2qtc_A 56 ISNYINTIPVEEQPEYPGNLELERRIRSAIRWNAIMTVLRASKKDLELGGHMASFQSSATIYDVCFNHFFRARNEQDGGD 135 (886)
T ss_dssp CCCSSCSSCGGGCCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHTCSCCCCCSHHHHHHHHHHHHHHHHTCCCCCSSSCCC
T ss_pred CCchhhhCCCccccCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccCcCCcHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 67899999888887777777999 8999999999999986 5 79999999999999999976 675 688
Q ss_pred EEEecCCchH---HHHHHHhCch--hhhHHHHh---hCCCCCCCCCCCCCC-CCcCcCCCcchHHHHHHHHHHHHH----
Q 004968 144 KILWDVGEQT---YAHKILTGRR--SLIHTLRK---KDGISGYTSRSESEY-DPFNAGHGCNSVSAGLGMAVARDI---- 210 (721)
Q Consensus 144 ~iv~d~GH~~---y~h~~ltGr~--~~~~~~r~---~ggl~G~~~~~es~~-d~~~~G~~G~~is~A~G~AlA~~l---- 210 (721)
||||+||++ |+|++|+||. ++|.++|| .+|++|||++.++|+ +.|++||+|+|+++|+|+|+|+++
T Consensus 136 -~V~~~GH~sp~~Ya~~~l~Gr~~~e~l~~fRq~~~~~gl~~~p~~~~~p~~~~~~tG~~G~g~s~AiG~A~a~~~l~~~ 214 (886)
T 2qtc_A 136 -LVYFQGHISPGVYARAFLEGRLTQEQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHR 214 (886)
T ss_dssp -EEECCGGGHHHHHHHHHHTTSSCHHHHTTBTCCTTSSCBCSSCCTTTSTTTCCCCCCSTTHHHHHHHHHHHHHHHHHHT
T ss_pred -EEEEcchhHHHHHHHHHHhCCCCHHHHHhccCCCCCCCCCCCCCcccCCCcccccccccCccHHHHHHHHHHhhhhccc
Confidence 999999999 9999999996 88999999 457999999999998 999999999999999999999998
Q ss_pred ---cCCCCeEEEEEcCCCcccchHHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCCcchhh---hhhhhhhhhhchH
Q 004968 211 ---KGKRECIVTVISNGTTMAGQAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINA---LSSTLSRIQSSKS 283 (721)
Q Consensus 211 ---~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~g~---l~~~l~~~~~~~~ 283 (721)
++.+++||||+|||++++|++|||||+|+.++ .|||||||||+|+ ++++++. +...|.+
T Consensus 215 ~~~~~~~~~v~aviGDG~l~eG~~~EAl~~A~~~~L~nli~Vvn~N~~s--------i~~~v~~~~~~~~~l~~------ 280 (886)
T 2qtc_A 215 GLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQR--------LDGPVTGNGKIINELEG------ 280 (886)
T ss_dssp TSCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBC--------SSSBSCTTSCHHHHHHH------
T ss_pred ccccCCCCEEEEEECCccccccchHHHHHHHHHcCCCcEEEEEECCCcc--------cCCCccccccccHHHHH------
Confidence 78899999999999999999999999999999 5799999999984 5566664 2222222
Q ss_pred HHHHHHHHhhhhhcc-C------------cchHHHHHHHHH------------HhhcccCCC---cccee---eeeCceE
Q 004968 284 FRQLREVAKGMTKRI-G------------RGMHEWAAKVDE------------YARGMIGPQ---GSTLF---EELGLYY 332 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~-g------------~~~~~~~~~~~~------------~~~~~~~~~---~~~l~---ea~G~~~ 332 (721)
.++..++...+.. | ..+.....++.+ ++|..+-.. ...+. ...|++|
T Consensus 281 --~~~~~G~~~~~v~~g~~~~~ll~~~~~~~l~~~~~~~~d~~~q~~~~~~g~~~r~~~F~~~~~~~~l~~~~~d~~i~~ 358 (886)
T 2qtc_A 281 --IFEGAGWNVIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWA 358 (886)
T ss_dssp --HHHHTTCEEEEECBCTTHHHHHHHCSSCHHHHHHHHCCHHHHHHHTTSCHHHHHHHTSTTSHHHHTTTTTCCHHHHHT
T ss_pred --HHHhCCCCEEEEecchhHHHHHccCCchHHHHHHHhccchhhhhhhhccchHHHHhhcccchHHHHHHhhcChhhHhh
Confidence 2233333333321 2 222222222222 232211100 01111 2248899
Q ss_pred EeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccccC------------------------
Q 004968 333 IGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGA------------------------ 388 (721)
Q Consensus 333 ~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~------------------------ 388 (721)
. ++||||+++|.++++++++. .++|++||++|+||+|++++++ ++.++|++.
T Consensus 359 l-~~dGhD~~~l~~a~~~A~~~-~~~PtlI~~~T~KG~G~~~~~e--~~~~~H~~~~l~~~~~~~~r~~~~~~~~~e~~~ 434 (886)
T 2qtc_A 359 L-NRGGHDPKKIYAAFKKAQET-KGKATVILAHTIKGYGMGDAAK--GKNIAHQVKKMNMDGVRHIRDRFNVPVSDADIE 434 (886)
T ss_dssp C-CBGGGCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTCC---------------CHHHHHHHHHTTCSCCHHHHT
T ss_pred c-ccCCCCHHHHHHHHHHHHHc-CCCCEEEEEeeeeccccchhhc--CCccccCCCCCCHHHHHHHHHHcCCCCChhhhc
Confidence 8 99999999999999999985 4689999999999999987765 688999874
Q ss_pred --CC--CC-----------------CC-CC-----------C------------CCcccHHHHHHHHHHHHHHcC---CC
Q 004968 389 --SD--SN-----------------SL-PF-----------G------------NYSRTYDDCFIEALVMEAEKD---KD 420 (721)
Q Consensus 389 --~f--~~-----------------g~-~~-----------~------------~~~~~~~~~~~~~L~~~~~~d---~~ 420 (721)
+| .+ |. +. + ....+++++|+++|.++++++ ++
T Consensus 435 ~~~f~~~~~~~~~~~~~~~r~~~l~g~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~atr~afg~~L~~l~~~~~~~~~ 514 (886)
T 2qtc_A 435 KLPYITFPEGSEEHTYLHAQRQKLHGYLPSRQPNFTEKLELPSLQDFGALLEEQSKEISTTIAFVRALNVMLKNKSIKDR 514 (886)
T ss_dssp TCCCCCCCTTSHHHHHHHHHHHHTTSCSSCCCCSCCSCCCCCCGGGGHHHHSCCSSCBCHHHHHHHHHHHHTTCTTTTTT
T ss_pred cccccCCccchHHHHHHHHHHHHhcccCcchhhhhhhcccCCchhhhhhhccCCCCcchHHHHHHHHHHHHHhhcccCCc
Confidence 55 11 11 00 1 123578999999999999988 99
Q ss_pred eEEEecC---CCCc------cC-----hHHHH-----------HhCCCcEeeccccHHHH-H---HHHHHHHhCC--Cee
Q 004968 421 IVVVHAG---MEMD------LS-----LQLFQ-----------EKFPERYFDVGMAEQHA-V---TFSAGLACGG--LKP 469 (721)
Q Consensus 421 iv~i~ad---~~~~------~~-----l~~f~-----------~~fp~R~~d~GIaE~~~-v---~~AaGlA~~G--~~p 469 (721)
||++++| |.|+ ++ +..|. +.||+||||+||+|++| + ++|+|+|++| ++|
T Consensus 515 iV~i~pd~~~~~G~~dl~~S~~i~~~~~~~f~~~d~~~~~~~~e~~~~R~~d~GIaE~~a~~~~~g~a~GlA~~G~~~~P 594 (886)
T 2qtc_A 515 LVPIIADEARTFGMEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDEKGQILQEGINELGAGCSWLAAATSYSTNNLPMIP 594 (886)
T ss_dssp EEEEESSCSGGGTCHHHHHHHCBBCC-----------------CBTTCCBEECCSCHHHHHHHHHHHHTHHHHTSCCCEE
T ss_pred EEEEcCccccccCcccccccccccccCCcccccccchhhhhhhhcCCCceeeeccCchhhhhHHHHHHHHHHhcCCCceE
Confidence 9999999 4432 22 24554 67899999999999995 5 6999999999 899
Q ss_pred EEEecHhh-HHHHHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHH
Q 004968 470 FCIIPSAF-LQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVA 547 (721)
Q Consensus 470 ~~~tys~F-l~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~ 547 (721)
|+.+|++| +||++||+++++++++.++++..+..+. +|.||+|||+.+|+++++++||++|++|+|+.|++.+++.|+
T Consensus 595 ~~~~ys~F~~qRa~Dqi~~~~d~~~~~v~l~~~~~~~~~g~dG~tHq~~~~~a~lr~iPnl~V~~Pada~E~~~~l~~al 674 (886)
T 2qtc_A 595 FYIYYSMFGFQRIGDLCWAAGDQQARGFLIGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGL 674 (886)
T ss_dssp EEEEEGGGSHHHHHHHHHHHHHTTCCCEEEEESCSTTTSTTTCTTTCCSCHHHHHTTSTTEEEECCSSHHHHHHHHHHHH
T ss_pred EEEEehHHHHHHHHHHHHHHHHHhcCCEEEEEecCcccCCCCCCccCCcchHHHHhhCCCCEEEecCCHHHHHHHHHHHH
Confidence 99999999 8999999999999999999998765443 689999999999999999999999999999999999999999
Q ss_pred HhCCCC----EEEEecCCC--cccccCCCCCCcceecCceEEEEeC----CcEEEEEechhhHHHHHHHHHHHhC-CCCe
Q 004968 548 SIDDRP----VCFRYPRGA--IVRTDLPGYRGIPIEIGKGKVLVEG----KDVALLGYGAMVQNCLKARALLSKL-GIDV 616 (721)
Q Consensus 548 ~~~~~P----~~ir~~r~~--~~~~~~p~~~~~~~~~gk~~vl~eG----~dv~Iva~Gs~v~~al~Aa~~L~~~-Gi~v 616 (721)
+..++| +++|++|++ .....+|....+.+ +++++++++| +||+||++|+++++|++|++.|+++ ||++
T Consensus 675 ~~~~gP~~e~v~i~~~r~~~~~~~p~~~~~~~~~~-~gga~vlr~g~~~~~dVtLia~G~~v~~al~AAe~L~~e~GI~a 753 (886)
T 2qtc_A 675 ERMYGEKQENVYYYITTLNENYHMPAMPEGAEEGI-RKGIYKLETIEGSKGKVQLLGSGSILRHVREAAEILAKDYGVGS 753 (886)
T ss_dssp HHHHSTTCCCCEEEEECCSCCBCCCCCCTTCHHHH-HHTCEEEEEECCSSEEEEEEECGGGHHHHHHHHHHHHHHHCEEE
T ss_pred HhcCCCCCceEEEEEeCCccccCCCCCCcchhhhc-cCceEEEEecCCCCCCEEEEeCcHHHHHHHHHHHHHhhhhCCce
Confidence 866789 999999975 21112332111234 7899999997 7999999999999999999999998 9999
Q ss_pred EEeecCccccccHHH-------------------HHHHhccCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEe
Q 004968 617 TVADARFCKPLDIKL-------------------VRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIV 677 (721)
Q Consensus 617 ~VId~~~l~PlD~e~-------------------i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g 677 (721)
+|||++|++|||+++ +.+++.. ..+|++|++.. |+++.+..++. ..+++.+|
T Consensus 754 ~Vvd~~sl~pLD~e~i~~~kt~rl~p~~~~~~~~~e~~l~~-~~vVa~ed~~~-g~~~~~~~~~~-------~~~~~~lG 824 (886)
T 2qtc_A 754 DVYSVTSFTELARDGQDCERWNMLHPLETPRVPYIAQVMND-APAVASTDYMK-LFAEQVRTYVP-------ADDYRVLG 824 (886)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHHHCTTSCCCCCHHHHHCCS-SCEEEECSSCT-HHHHTTGGGCC-------SSCEEEEC
T ss_pred EEEECCcCcccchHHHHHhhhcccCccccccHHHHHHhcCC-CCEEEEEeccc-chHHHHHHHcC-------CCCeEEEE
Confidence 999999999999986 4455555 67888998876 56665544332 14678899
Q ss_pred cCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhh
Q 004968 678 LPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 711 (721)
Q Consensus 678 ~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 711 (721)
+ |.|+.+|+++++++++|||+++|++++++++.
T Consensus 825 ~-D~Fg~sg~~~~L~~~~Gld~e~Iv~~a~~~L~ 857 (886)
T 2qtc_A 825 T-DGFGRSDSRENLRHHFEVDASYVVVAALGELA 857 (886)
T ss_dssp C-CSCCCCCCHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred e-CCCCCCCCHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9 99999999999999999999999999999884
|
| >1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-91 Score=813.24 Aligned_cols=535 Identities=19% Similarity=0.201 Sum_probs=464.5
Q ss_pred HHHHHHHHHHHHHHHhHhc-CCCCCCCcccHHHHHHHHhc---ccC------CCCcEEEecCCchH---HHHHHHhCc--
Q 004968 98 ELKQLAVEIRSELSSIVSK-TEKSLKSSLAAVELTVALHH---VFH------APVDKILWDVGEQT---YAHKILTGR-- 162 (721)
Q Consensus 98 ~l~~la~eiR~~~~~~~~~-~~Gh~~sslg~vel~~aL~~---vf~------~p~D~iv~d~GH~~---y~h~~ltGr-- 162 (721)
+|+++|++||..+++++.+ ++||+|+++|+++++.+||+ .|| .++|+||+|+||++ |++++++|+
T Consensus 5 ~~~~~a~~iR~~~~~~v~~a~~GH~g~~ls~a~~~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~l~G~~~ 84 (673)
T 1r9j_A 5 SIEKVANCIRCLAADIVQGGKSGHPGTPMGMAPMSAVLWTEVMKYNSQDPDWVDRDRFVMSNGHGCALQYALLHMAGYNL 84 (673)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCSCCHHHHHTHHHHHHHHHTTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHhhCCCCCCCCCCCCCeEEEccccHHHHHHHHHHHcCCCC
Confidence 4778999999999999986 89999999999999999996 455 23799999999999 999999999
Q ss_pred -hhhhHHHHhhCC-CCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcC----------CCCeEEEEEcCCCcccch
Q 004968 163 -RSLIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKG----------KRECIVTVISNGTTMAGQ 230 (721)
Q Consensus 163 -~~~~~~~r~~gg-l~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g----------~~~~VvaviGDGal~~G~ 230 (721)
.+++.++||+++ ++|||++.+++++.+++|++|+++|+|+|+|+|.++++ .+++|||++|||++++|+
T Consensus 85 ~~~~l~~~r~~~s~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~~~eG~ 164 (673)
T 1r9j_A 85 TMDDLKGFRQDGSRTPGHPERFVTPGVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGV 164 (673)
T ss_dssp CHHHHHTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHH
T ss_pred CHHHHHhhccCCCCCCCCCCCCCCCCeeeccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcchhcccH
Confidence 588999999997 56999988899999999999999999999999999775 689999999999999999
Q ss_pred HHHHHHHhhhcCC-CEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHH
Q 004968 231 AYEAMSNAGYLDS-NMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKV 309 (721)
Q Consensus 231 ~~Ealn~A~~~~~-plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~ 309 (721)
+||||++|+++++ |+|+|+|||+++ ++.++... .
T Consensus 165 ~~Eal~~A~~~~L~~li~i~d~N~~~--------i~~~~~~~--------------------------~----------- 199 (673)
T 1r9j_A 165 CQEALSLAGHLALEKLIVIYDSNYIS--------IDGSTSLS--------------------------F----------- 199 (673)
T ss_dssp HHHHHHHHHHHTCTTEEEEEEECSBC--------SSSBGGGT--------------------------C-----------
T ss_pred HHHHHHHHHHhCCCcEEEEEECCCCc--------cccchhhc--------------------------c-----------
Confidence 9999999999996 599999999983 23232210 0
Q ss_pred HHHhhcccCCCccceeeeeCceEEeccCC-CCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccccC
Q 004968 310 DEYARGMIGPQGSTLFEELGLYYIGPVDG-HNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGA 388 (721)
Q Consensus 310 ~~~~~~~~~~~~~~l~ea~G~~~~g~vdG-hd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~ 388 (721)
..+...+|+++||++++.+|| ||+++|.++++++++. .++|++|+++|.||+|++ .| +..+||+.+
T Consensus 200 --------~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~Al~~A~~~-~~~P~lI~~~T~kg~G~~-~~---~~~~~H~~~ 266 (673)
T 1r9j_A 200 --------TEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKAT-KGKPKMIVQTTTIGFGSS-KQ---GTEKVHGAP 266 (673)
T ss_dssp --------CCCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTST-TT---TSGGGTSSC
T ss_pred --------CHhHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHHHHHc-CCCCEEEEEecccccccc-cC---CCcccccCC
Confidence 111245789999999888999 9999999999999863 478999999999999998 55 478899963
Q ss_pred -------------------CCCC--------------CC------------------------------CCC--------
Q 004968 389 -------------------SDSN--------------SL------------------------------PFG-------- 397 (721)
Q Consensus 389 -------------------~f~~--------------g~------------------------------~~~-------- 397 (721)
+|.. |+ ..+
T Consensus 267 ~~~ee~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~~P~~~~~~~~~~~~~~p~~~~~~~p 346 (673)
T 1r9j_A 267 LGEEDIANIKAKFGRDPQKKYDVDDDVRAVFRMHIDKCSAEQKAWEELLAKYTAAFPAEGAAFVAQMRGELPSGWEAKLP 346 (673)
T ss_dssp CCHHHHHHHHHHTTSCSSCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCTTTGGGSC
T ss_pred CCHHHHHHHHHhcCCCCcccccCCHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhChhHHHHHHHHhcCCCCchhhhhcc
Confidence 2300 00 000
Q ss_pred --CCcccHHHHHHHHHHHHHHcCCCeEEEecCCCCccChH--H-----HHH-hCCCcEeeccccHHHHHHHHHHHHhC-C
Q 004968 398 --NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQ--L-----FQE-KFPERYFDVGMAEQHAVTFSAGLACG-G 466 (721)
Q Consensus 398 --~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~--~-----f~~-~fp~R~~d~GIaE~~~v~~AaGlA~~-G 466 (721)
....+++++++++|.++++++|+++++++|+++++++. + |++ +||+||||+||+|++|+++|+|+|+. |
T Consensus 347 ~~~~~~a~r~a~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~~~f~~~~~~~R~id~GIaE~~~~~~a~GlA~~GG 426 (673)
T 1r9j_A 347 TNSSAIATRKASENCLAVLFPAIPALMGGSADLTPSNLTRPASANLVDFSSSSKEGRYIRFGVREHAMCAILNGLDAHDG 426 (673)
T ss_dssp CCCSCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCSCGGGCCCBCBTTBTTCCEEECCSCHHHHHHHHHHHHHHSS
T ss_pred ccccchHHHHHHHHHHHHHHhhCCCEEEEeccccccccccccCcccccccccCCCCCeEecCccHHHHHHHHHHHHhcCC
Confidence 02356889999999999999999999999998766552 3 887 99999999999999999999999999 5
Q ss_pred CeeEEEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 004968 467 LKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVAT 545 (721)
Q Consensus 467 ~~p~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~ 545 (721)
++||+++|++|++++++|| +++|++++||++++++.|+ +|+||+|||+.+|+++++++||++|++|+|++|++.++++
T Consensus 427 ~~P~~~~~~~F~~~~~~~i-r~~a~~~~pvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~e~~~~l~~ 505 (673)
T 1r9j_A 427 IIPFGGTFLNFIGYALGAV-RLAAISHHRVIYVATHDSIGVGEDGPTHQPVELVAALRAMPNLQVIRPSDQTETSGAWAV 505 (673)
T ss_dssp CEEEEEEEGGGGGGGHHHH-HHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHHSTTCEEECCSSHHHHHHHHHH
T ss_pred CEEEEEehHHHHHHHHHHH-HHHHhcCCCEEEEEECCccCcCCCCcccCCHHHHHHHcCCCCCEEEeCCCHHHHHHHHHH
Confidence 9999999999999999997 5589999999999988777 7999999999999999999999999999999999999999
Q ss_pred HHHhCCCCEEEEecCCCcccccCCCCCCc-ceecCceEEEEeC--CcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecC
Q 004968 546 VASIDDRPVCFRYPRGAIVRTDLPGYRGI-PIEIGKGKVLVEG--KDVALLGYGAMVQNCLKARALLSKLGIDVTVADAR 622 (721)
Q Consensus 546 a~~~~~~P~~ir~~r~~~~~~~~p~~~~~-~~~~gk~~vl~eG--~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~ 622 (721)
|++..++|++||++|++.+. ++.. .+ .+++| ++++++| +|++||++|+++++|++|++.|+++ |+++|||++
T Consensus 506 a~~~~~~Pv~i~~~r~~~~~--~~~~-~~~~~~~G-a~vl~~g~~~dv~lia~G~~v~~al~Aa~~L~~~-i~~~Vv~~~ 580 (673)
T 1r9j_A 506 ALSSIHTPTVLCLSRQNTEP--QSGS-SIEGVRHG-AYSVVDVPDLQLVIVASGSEVSLAVDAAKALSGE-LRVRVVSMP 580 (673)
T ss_dssp HHHCTTCCEEEECCSSEECC--CTTC-CHHHHHTS-CEEEECCTTCSEEEEECGGGHHHHHHHHHHHTTT-CCEEEEECS
T ss_pred HHHhCCCeEEEEEcCCCCCC--CCCc-ccccccCC-CEEEeeCCCCCEEEEEechhHHHHHHHHHHHHhc-CCEEEEeCC
Confidence 99855899999999987543 2322 23 46678 6899998 8999999999999999999999999 999999999
Q ss_pred ccccccHHH---HHHHhccCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCH
Q 004968 623 FCKPLDIKL---VRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTG 699 (721)
Q Consensus 623 ~l~PlD~e~---i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~ 699 (721)
|++|||++. +.++++++.++|+||++..+||+++| +++ +|+ |.|+++|+.+++++++|+|+
T Consensus 581 sl~pld~~~~~~i~~~~~~~~~vv~vE~~~~~g~~~~v--------------~~~-~g~-d~f~~sg~~~~L~~~~g~~~ 644 (673)
T 1r9j_A 581 CQELFDAQPDTYRQAVLPAGVPVVSVEAYVSFGWEKYS--------------HAH-VGM-SGFGASAPAGVLYKKFGITV 644 (673)
T ss_dssp CHHHHHTSCHHHHHHHSCTTSCEEEECSSCCTTGGGTC--------------SEE-ESC-SSCCCSSCHHHHHHHTTCSH
T ss_pred CCchhhcccHHHHHHHhccCCeEEEEeCCCccchHHhc--------------Cce-EEe-ccCCCCCCHHHHHHHHCcCH
Confidence 999999985 88888888889999999888887543 133 898 99999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 004968 700 HHIAATALSLLGR 712 (721)
Q Consensus 700 ~~I~~~i~~~l~~ 712 (721)
++|+++|++++++
T Consensus 645 ~~I~~~i~~~l~~ 657 (673)
T 1r9j_A 645 EEVVRTGRELAKR 657 (673)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999843
|
| >3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-64 Score=586.53 Aligned_cols=527 Identities=12% Similarity=0.089 Sum_probs=415.3
Q ss_pred CCCCCCCcccHHHHHHHHhcccC-CCCcE-EEecCCchH---HHHHHHhCch-----------hhhHH-HHhhC---CCC
Q 004968 117 TEKSLKSSLAAVELTVALHHVFH-APVDK-ILWDVGEQT---YAHKILTGRR-----------SLIHT-LRKKD---GIS 176 (721)
Q Consensus 117 ~~Gh~~sslg~vel~~aL~~vf~-~p~D~-iv~d~GH~~---y~h~~ltGr~-----------~~~~~-~r~~g---gl~ 176 (721)
.+||+|+++|++++.+.+.++.. ..+|+ ||+++||.+ |+...|.|.. +.+.. +|||. |+.
T Consensus 81 ~sGH~G~~~g~a~iy~~~~~~~~~~~rDr~fvls~GHg~p~lYa~l~l~G~~~~~~p~~s~d~e~Lk~lfrqfs~~gg~p 160 (845)
T 3ahc_A 81 LVGHWGTTPGLNFLLAHINRLIADHQQNTVFIMGPGHGGPAGTSQSYVDGTYTEYYPNITKDEAGLQKFFRQFSYPGGIP 160 (845)
T ss_dssp CCSCCTTHHHHHHHHHHHHHHHHHHTBCBCCEESSGGGHHHHHHHHHHHTHHHHHCTTSCSSHHHHHHHHHHBTCTTSBC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcccCCCceEEEECcCcHHHHHHHHHHHcCCCccccccccccHHHHHHHHHhccCCCCCC
Confidence 57999999999998433322211 35899 799999999 9998999983 44655 57764 488
Q ss_pred CCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccch---HHHHHHHhhhcC-CCEEEEEECC
Q 004968 177 GYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQ---AYEAMSNAGYLD-SNMIVILNDS 252 (721)
Q Consensus 177 G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~---~~Ealn~A~~~~-~plivIv~dN 252 (721)
|||.+ +.|+....+|++|+|++.|+|||+ .+++.+|+|++|||+..+|. .||+.++|..++ .||++|+++|
T Consensus 161 gHp~~-~tpGve~~tG~LGqGls~AvG~A~----~~~~~~v~~~~GDGe~e~GsLAg~wea~~~~~~~~l~nl~~i~D~N 235 (845)
T 3ahc_A 161 SHFAP-ETPGSIHEGGELGYALSHAYGAVM----NNPSLFVPCIIGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHLN 235 (845)
T ss_dssp SSCCT-TSTTCSCCCSSTTCHHHHHHHHHT----TCTTCEEEEEEETTGGGSHHHHHHGGGGGSCCTTTSCEEEEEEEEC
T ss_pred CCCCC-CCCCeecCCCCccchHhHHhhhhh----cCCCCeEEEEECCCchhhhcchhhhHHhhhhhhhcCCCEEEEEECC
Confidence 88865 677878899999999999999995 46789999999999999999 999999999998 8999999999
Q ss_pred CCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceE
Q 004968 253 RHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYY 332 (721)
Q Consensus 253 ~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~ 332 (721)
+++ ++.+.- + .+. +.+++ ..+|++|||++
T Consensus 236 ~~~--------i~g~t~-l----~~~----------------------~~e~l----------------~~rf~a~Gw~v 264 (845)
T 3ahc_A 236 GYK--------IANPTI-L----ARI----------------------SDEEL----------------HDFFRGMGYHP 264 (845)
T ss_dssp SBS--------SSSBCH-H----HHS----------------------CHHHH----------------HHHHHHTTEEE
T ss_pred CCc--------CCCCcc-c----ccc----------------------CcHHH----------------HHHHHHCCCEE
Confidence 984 222221 0 000 00111 34689999999
Q ss_pred EeccCC-C--CHHHHHHHHHH---------------HHhcCCCCC--EEEEEEEeccC-------CCccccccccccccc
Q 004968 333 IGPVDG-H--NIEDLISVLQE---------------VASLGSMGP--VLVHVVTEENR-------RAEDTQKSEAIEKQQ 385 (721)
Q Consensus 333 ~g~vdG-h--d~~~l~~al~~---------------a~~~~~~~P--~lI~v~T~kg~-------G~~~ae~~~~~~~~H 385 (721)
+..||| | |++++.+++.+ ++....++| ++|.++|.||+ |. +.| +..+||
T Consensus 265 ~~~vdG~~~~D~~~i~~a~~~al~~~~~~i~~i~~~A~~~~~~kP~w~~Ii~rT~kG~tgp~~~~G~-~~e---g~~~~H 340 (845)
T 3ahc_A 265 YEFVAGFDNEDHMSIHRRFAELFETIFDEICDIKAAAQTDDMTRPFYPMLIFRTPKGWTCPKFIDGK-KTE---GSWRAH 340 (845)
T ss_dssp EEEECSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCEEEEEEECCTTTTSCSEETTE-ECT---TSGGGS
T ss_pred eEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEECcccCCCCCCCCCc-ccC---CCcccc
Confidence 767899 9 99988877542 222113689 99999999999 98 466 477899
Q ss_pred ccCC-------------------------C--------------CCCCC-------------CC----C-----------
Q 004968 386 EGAS-------------------------D--------------SNSLP-------------FG----N----------- 398 (721)
Q Consensus 386 g~~~-------------------------f--------------~~g~~-------------~~----~----------- 398 (721)
+++. | ..|.. .+ +
T Consensus 341 ~~pl~~~~~~~~~~~~l~~wl~~~~p~elF~~~~~~~~~~~~~~~~g~~r~~~~P~~~~g~l~~~~~lp~~~~~~~~~~~ 420 (845)
T 3ahc_A 341 QVPLASARDTEEHFEVLKGWMESYKPEELFNADGSIKDDVTAFMPKGELRIGANPNANGGVIREDLKLPELDQYEVTGVK 420 (845)
T ss_dssp SCSCTTTTTCHHHHHHHHHHHHHTCGGGTBCTTSCBCHHHHTTSCCGGGSTTTCGGGGGGGTCCCCCCCCGGGGCCTHHH
T ss_pred CCCCCCcccCHHHHHHHhhhccCCCchhccCCchHHHHHHHHhCcchHhHhhhCHHhcCCcCccccCCCChHhhhccccc
Confidence 8741 2 00000 00 0
Q ss_pred ----C--cccHHHHHHHHHHHHHHcCCC-eEEEecCCCCccChHHHHHh---------C--C--------CcEeeccccH
Q 004968 399 ----Y--SRTYDDCFIEALVMEAEKDKD-IVVVHAGMEMDLSLQLFQEK---------F--P--------ERYFDVGMAE 452 (721)
Q Consensus 399 ----~--~~~~~~~~~~~L~~~~~~d~~-iv~i~ad~~~~~~l~~f~~~---------f--p--------~R~~d~GIaE 452 (721)
. ...-+.+++++|.++++.+|+ +++++||+.+|+.+..|.+. + | +|||+ ||+|
T Consensus 421 ~~~~g~~~~~atra~g~~L~~l~~~~p~~~vv~sADl~~Sn~t~~f~~~t~~~~~~~~~~~P~d~~~~~~GR~i~-GI~E 499 (845)
T 3ahc_A 421 EYGHGWGQVEAPRALGAYCRDIIKNNPDSFRIFGPDETASNRLNATYEVTDKQWDNGYLSGLVDEHMAVTGQVTE-QLSE 499 (845)
T ss_dssp HHCTTEEEECTHHHHHHHHHHHHHHSTTTEEEEESSCTTTTTCGGGGGTCCEECCSCCCCTTTCCSEESSCSEEE-CSCH
T ss_pred cccCCccchhHHHHHHHHHHHHHHhCCCcEEEEecCCCccccHHHHHhhcccccccccccCCcccccCCCCcEee-eecH
Confidence 0 113478889999999999999 99999999999999888777 7 7 89999 9999
Q ss_pred HHHHHHHHHHHhCCCeeEEEecHhhH---HHHHHH----HHHHhhcC----Cc-ceEEEEcCCCC-cCCCCCCcCc--HH
Q 004968 453 QHAVTFSAGLACGGLKPFCIIPSAFL---QRAYDQ----VVNDVDQQ----RL-PVRFVITSAGL-VGSDGPTQCG--AF 517 (721)
Q Consensus 453 ~~~v~~AaGlA~~G~~p~~~tys~Fl---~ra~dq----i~~~~a~~----~l-pVv~v~~~~G~-~G~dG~TH~~--~~ 517 (721)
|+|+++++|+|+.|..||+.+|++|+ .|+++| |++.++++ .+ +|+++.++.|+ +|+||+|||+ .+
T Consensus 500 h~M~gia~Glal~G~~~f~~t~atFl~~~~~a~~q~akwiR~a~a~~~wr~~~~~v~~v~Th~si~~GeDGpTHQ~~e~~ 579 (845)
T 3ahc_A 500 HQCEGFLEAYLLTGRHGIWSSYESFVHVIDSMLNQHAKWLEATVREIPWRKPISSVNLLVSSHVWRQDHNGFSHQDPGVT 579 (845)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEHHHHGGGHHHHHHHHHHHHHHHHHCTTSCCCBCEEEEEESCGGGCTTTCGGGCCCTHH
T ss_pred HHHHHHHHHHHhcCCCCceecchhhhchhhhHHHHHHHHHHhhHHhhhhcccCCceEEEEeCCceeecCCCCCCCCcHHH
Confidence 99999999999999999999998887 799999 87663443 45 69999999999 8999999999 56
Q ss_pred HHHHHc---cCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEecCCCcccccCCCCCCc---ceecCceEEE---Ee--
Q 004968 518 DITFMS---CLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPRGAIVRTDLPGYRGI---PIEIGKGKVL---VE-- 586 (721)
Q Consensus 518 dia~~~---~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~p~~~~~---~~~~gk~~vl---~e-- 586 (721)
|+..++ .+||+.|+.|+|++|+..+++.|++..+.|.+++++|++.+.. ... .+ .+..|++.+. ++
T Consensus 580 d~l~~~r~~~iPn~~V~~PaDanet~~a~~~al~~~~~~~v~v~sRq~~p~~--~~~-~~a~~~~~~G~~v~~~as~d~~ 656 (845)
T 3ahc_A 580 SLLINKTFNNDHVTNIYFATDANMLLAISEKCFKSTNKINAIFAGKQPAPTW--VTL-DEARAELEAGAAEWKWASNAEN 656 (845)
T ss_dssp HHHGGGCCTTCCCEEEEECCSHHHHHHHHHHHHHCBSCEEEEECCCSCEEEC--SCH-HHHHHHHHHSEEECTTTCCCSS
T ss_pred HHHHHhhccCCCCeEEEeCCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcc--CCc-hhhhhhhcCCeEEEEeeccccc
Confidence 666665 7899999999999999999999998555555555699986542 111 12 3456666555 35
Q ss_pred C--CcEEEEEechhh-HHHHHHHHHHHhCCCCeEEeecCcc---ccccHHHHHHHhccCCeEEEEcCCC---CCChHHHH
Q 004968 587 G--KDVALLGYGAMV-QNCLKARALLSKLGIDVTVADARFC---KPLDIKLVRELCQNHTFLITVEEGS---IGGFGSHV 657 (721)
Q Consensus 587 G--~dv~Iva~Gs~v-~~al~Aa~~L~~~Gi~v~VId~~~l---~PlD~e~i~~l~~~~~~vvvvEe~~---~gG~gs~v 657 (721)
| .||+||++|+++ .+|++|++.|+++||+++|||+.++ +|.|++.+....+..+.|+|+|++. .||+++.|
T Consensus 657 g~~~DVvLiAtGsev~~EAL~AA~~L~~~GI~vRVVsm~~lf~lqp~~~~~~~ls~~~~~~l~T~e~h~i~~~gGlgsaV 736 (845)
T 3ahc_A 657 NDEVQVVLASAGDVPTQELMAASDALNKMGIKFKVVNVVDLLKLQSRENNDEALTDEEFTELFTADKPVLFAYHSYAQDV 736 (845)
T ss_dssp TTTCSEEEEEESHHHHHHHHHHHHHHHHTTCCEEEEEECBGGGGSCTTTCTTSCCHHHHHHHHCSSSCEEEEESSCHHHH
T ss_pred CCCCCEEEEEeccHHHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccCHHHhCcEeecCCcceeeecCcHHHH
Confidence 5 799999999775 5599999999999999999999999 5655443322333456778888886 39999999
Q ss_pred HHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhh
Q 004968 658 SHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 711 (721)
Q Consensus 658 ~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 711 (721)
++.+.++. .+.++.++|++| |+.+|++.++++++|||.++|++++++++.
T Consensus 737 ~ell~~r~---~~~~l~v~G~~d-~G~tgtp~eLl~~~gld~~~Iv~~a~~~l~ 786 (845)
T 3ahc_A 737 RGLIYDRP---NHDNFHVVGYKE-QGSTTTPFDMVRVNDMDRYALQAAALKLID 786 (845)
T ss_dssp HHHTTTST---TGGGEEEECCCS-CCCSCCHHHHHHTTTCSHHHHHHHHHHHHH
T ss_pred HHHHHhCC---CCceEEEEeccC-CCCCCCHHHHHHHhCcCHHHHHHHHHHHcc
Confidence 99988762 146899999998 999999999999999999999999999886
|
| >2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-61 Score=571.51 Aligned_cols=550 Identities=14% Similarity=0.101 Sum_probs=392.5
Q ss_pred CCCCHHHHHHHHHHH---HHHHHHhHhc-CCCCCCCcccHHHHHHHHhcccC-----CCCcEEEecCCchHHHHHHH--h
Q 004968 92 KSLTIKELKQLAVEI---RSELSSIVSK-TEKSLKSSLAAVELTVALHHVFH-----APVDKILWDVGEQTYAHKIL--T 160 (721)
Q Consensus 92 ~~~~~~~l~~la~ei---R~~~~~~~~~-~~Gh~~sslg~vel~~aL~~vf~-----~p~D~iv~d~GH~~y~h~~l--t 160 (721)
.+++.+++..+.+.+ |.+=-....+ .+|-.-+..|+-.+..++.+.++ .++|+++. ..||.+.|.+. .
T Consensus 193 ~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~gkrf~~~G~Ea~i~g~~~~~~~a~~~g~~D~v~g-~~hRg~~~~Lan~~ 271 (933)
T 2jgd_A 193 ATFNSEEKKRFLSELTAAEGLERYLGAKFPGAKRFSLEGGDALIPMLKEMIRHAGNSGTREVVLG-MAHRGRLNVLVNVL 271 (933)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCTTCTTHHHHHHHHHHHHHTTTCCEEEEE-CCSTTHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCchHHHHHHHHHHHHHhhCCCCCEEec-CCCcCHHHHHHHHh
Confidence 457878777665544 3322222222 22221224555223333222221 35777763 37999999888 6
Q ss_pred CchhhhHHHHhh-CCCCCCCCCCC-CCC-----------------CCcCcCCCcchHHHHHHHHHHHHHcC-----CCCe
Q 004968 161 GRRSLIHTLRKK-DGISGYTSRSE-SEY-----------------DPFNAGHGCNSVSAGLGMAVARDIKG-----KREC 216 (721)
Q Consensus 161 Gr~~~~~~~r~~-ggl~G~~~~~e-s~~-----------------d~~~~G~~G~~is~A~G~AlA~~l~g-----~~~~ 216 (721)
|.... ..+.++ |...|.....+ +.| ..+..||+|+++|+|+|+|+|+++++ .++.
T Consensus 272 G~~~~-~i~~e~~G~~~g~~g~gdv~~Hlg~~~~~~~~gg~~~l~l~~~~shlg~~~p~A~G~A~A~~~~~~~~~~~~~~ 350 (933)
T 2jgd_A 272 GKKPQ-DLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIVSPVVIGSVRARLDRLDEPSSNKVL 350 (933)
T ss_dssp CCCHH-HHHHHHHTCC--CCSCCCCGGGCCEEEEEEETTEEEEEEECCCCSSTTCHHHHHHHHHHHHHTTSSSCCGGGEE
T ss_pred CCCHH-HHHHHhcCCCCCCCCCCCccccCCcccccccCCCceEEeecccCcccccccCHHHHHHHHHHhhccccCCCCeE
Confidence 75221 223343 32233221111 111 13667999999999999999999884 6789
Q ss_pred EEEEEcCCCc-ccchHHHHHHHhhhcCCC---EEEEEECCCCCcCCCccCCCCc-chhhhhhhhhhhhhchHHHHHHHHH
Q 004968 217 IVTVISNGTT-MAGQAYEAMSNAGYLDSN---MIVILNDSRHSLHPKIEESPKT-SINALSSTLSRIQSSKSFRQLREVA 291 (721)
Q Consensus 217 VvaviGDGal-~~G~~~Ealn~A~~~~~p---livIv~dN~~~s~~t~~~~~~~-~~g~l~~~l~~~~~~~~~~~~r~~~ 291 (721)
+||++|||++ ++|++||+||+|+.+++| +|+||+||++. +++ +++.. .
T Consensus 351 vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~~~--------ist~~~~~~-------~------------ 403 (933)
T 2jgd_A 351 PITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVG--------FTTSNPLDA-------R------------ 403 (933)
T ss_dssp EEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC---------------------------------------
T ss_pred EEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCCcc--------ccCCCHHhc-------c------------
Confidence 9999999998 899999999999999999 99999999983 222 22200 0
Q ss_pred hhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEEecc
Q 004968 292 KGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL--GSMGPVLVHVVTEEN 369 (721)
Q Consensus 292 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~--~~~~P~lI~v~T~kg 369 (721)
.++....+++++||.++ .|||+|++++.++++++++. ..++|++|++.|.++
T Consensus 404 -------------------------~~~~~~~~a~a~g~p~~-~VdG~D~~av~~a~~~A~e~~r~~~~P~lIe~~tyR~ 457 (933)
T 2jgd_A 404 -------------------------STPYCTDIGKMVQAPIF-HVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRR 457 (933)
T ss_dssp ----------------------------CGGGGGGTTTCCEE-EEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_pred -------------------------cchhHHHHHHHcCCCEE-EECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeeeee
Confidence 00112456788999988 78999999999998887631 147899999999999
Q ss_pred CCCccccc-----------c--------------------------------------------c------ccccccccC
Q 004968 370 RRAEDTQK-----------S--------------------------------------------E------AIEKQQEGA 388 (721)
Q Consensus 370 ~G~~~ae~-----------~--------------------------------------------~------~~~~~Hg~~ 388 (721)
+|+...+. + . ....||++.
T Consensus 458 ~GH~~~D~~~yr~~~e~~~~~~~~dPi~~~~~~Li~~Gv~t~~~~~~i~~~~~~~v~~a~~~A~~~~p~~~~~~~~~~~~ 537 (933)
T 2jgd_A 458 HGHNEADEPSATQPLMYQKIKKHPTPRKIYADKLEQEKVATLEDATEMVNLYRDALDAGDCVVAEWRPMNMHSFTWSPYL 537 (933)
T ss_dssp C-----------CCTTHHHHHTSCCHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHTSCCCTTEECCCGGGCTTGGGS
T ss_pred cCcCcccchhhCCHHHHHHHHccCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccccc
Confidence 88643210 0 0 012456654
Q ss_pred CC------CCCCCCC-----------------------------------CCcccHHHHHHHHHHHHHHcCCCeEEEecC
Q 004968 389 SD------SNSLPFG-----------------------------------NYSRTYDDCFIEALVMEAEKDKDIVVVHAG 427 (721)
Q Consensus 389 ~f------~~g~~~~-----------------------------------~~~~~~~~~~~~~L~~~~~~d~~iv~i~ad 427 (721)
+| .||.+.+ ....+|..+++.+|.+++++|++|+++++|
T Consensus 538 ~~~~~~~~~tg~~~~~l~~i~~~~~~~p~~~~~~~~v~~~~~~R~~~~~~~~~~dw~~~e~~al~~l~~~~~~V~~~g~D 617 (933)
T 2jgd_A 538 NHEWDEEYPNKVEMKRLQELAKRISTVPEAVEMQSRVAKIYGDRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLSGED 617 (933)
T ss_dssp SCCTTCCCCCCCCHHHHHHHHHHTTCCCTTSCCCHHHHHHHHHHHHHHTTSSCBCHHHHHHHHHHHHHTTTCCEEEEETT
T ss_pred ccccccCCCCCCCHHHHHHHHhhhcCCCCCCcccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhcCCCEEEECCc
Confidence 43 2332200 013578899999999999999999999999
Q ss_pred CCCc------------------cChHHHHHhC-CCcEeeccccHHHHHHHHHHHHhCCCe--eEEE-ecHhhHH---HHH
Q 004968 428 MEMD------------------LSLQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLK--PFCI-IPSAFLQ---RAY 482 (721)
Q Consensus 428 ~~~~------------------~~l~~f~~~f-p~R~~d~GIaE~~~v~~AaGlA~~G~~--p~~~-tys~Fl~---ra~ 482 (721)
++.| ++++.|.++| |+||||+||+|++++|+|+|+|++|.+ |+++ +|++|++ |++
T Consensus 618 v~~gTfs~rh~v~~d~~~g~~~~~l~~l~~~~gp~rv~ds~IaE~~~vg~a~G~A~~G~~~lpv~e~qf~dF~~~AQra~ 697 (933)
T 2jgd_A 618 SGRGTFFHRHAVIHNQSNGSTYTPLQHIHNGQGAFRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVI 697 (933)
T ss_dssp TTTCTTSCCCCSEECSSSSCEECGGGCSCTTCCCEEEECCCSCHHHHHHHHHHHHHHCTTSEEEEEC-CGGGGGGGHHHH
T ss_pred cCCcchhhhhhhcccccCCceeechHHHHHHcCCCeEEECCcCHHHHHHHHHHHHhcCCCCCCEEEEEEhhhhcccHHHH
Confidence 9876 4578899999 999999999999999999999999998 9886 6999996 999
Q ss_pred HHHHHHh-h--cCCcceEEEEcCCCCcCCCCCCcCc--HHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhC-CCCEEE
Q 004968 483 DQVVNDV-D--QQRLPVRFVITSAGLVGSDGPTQCG--AFDITFMSCLPNMIVMAPSDEDELVDMVATVASID-DRPVCF 556 (721)
Q Consensus 483 dqi~~~~-a--~~~lpVv~v~~~~G~~G~dG~TH~~--~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~-~~P~~i 556 (721)
||+++++ + .+++||++++++ |..| .|++||+ .+++..++++|||+|++|+|+.|++.|+++++... ++|++|
T Consensus 698 DQii~~~~ak~~~~~~vv~~l~~-G~~g-~G~~Hss~~~E~~l~~~~~pnm~V~~Pst~~e~~~lLr~a~~~~~~~Pvii 775 (933)
T 2jgd_A 698 DQFISSGEQKWGRMCGLVMLLPH-GYEG-QGPEHSSARLERYLQLCAEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVV 775 (933)
T ss_dssp HHTTTTHHHHHCCCCCCEEEEEC-CCSS-SCTTSSCCCHHHHHHTCCTTCCEEECCCSHHHHHHHHHHHHHSSCCCCEEE
T ss_pred HHHHHHHHHHHccCCCEEEEEeC-CCCC-CCcccccchHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHhcCCCcEEE
Confidence 9999998 6 479999999998 5556 4999999 55544445679999999999999999999985443 799999
Q ss_pred EecCCCccc-ccCCC-----CCCcceecCceEEEEeCCcE--EEEEechhhHHHHHHHHHHHhCCCCeEEeecCcccccc
Q 004968 557 RYPRGAIVR-TDLPG-----YRGIPIEIGKGKVLVEGKDV--ALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLD 628 (721)
Q Consensus 557 r~~r~~~~~-~~~p~-----~~~~~~~~gk~~vl~eG~dv--~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD 628 (721)
|+||..+.. ..++. ...+.+++|++.+++ |+|| +|+++|.+...+++|++.|+++ +++|||+++|+|||
T Consensus 776 ~~pk~l~r~~~~~~~~~~~~~~~f~~~ig~~~~~~-g~dV~~vI~~~G~v~~~l~aa~~~l~~~--~v~VIdl~~l~Pld 852 (933)
T 2jgd_A 776 MSPKSLLRHPLAVSSLEELANGTFLPAIGEIDELD-PKGVKRVVMCSGKVYYDLLEQRRKNNQH--DVAIVRIEQLYPFP 852 (933)
T ss_dssp EECSGGGGCTTCCBCHHHHHHCCCCSEECCCSCCC-GGGCCEEEEECTTHHHHHHHHHHHTTCC--SEEEEEECEEESCC
T ss_pred EecchhccCCCCcCCccccCCCceeecCCcceEee-cCcceEEEEEchHHHHHHHHHHHHcccC--CeEEEEeeccCCCC
Confidence 999986431 11110 123456789988777 8899 6777777777777777888765 89999999999999
Q ss_pred HHHHHHHhccCC---eEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCcccc-CCCHHHHHHHcCCCHHHHH
Q 004968 629 IKLVRELCQNHT---FLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIE-HASPTQQLALAGLTGHHIA 703 (721)
Q Consensus 629 ~e~i~~l~~~~~---~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~-~g~~~~l~~~~gl~~~~I~ 703 (721)
+++|.+++++++ .||++||+. .||++++|++.+.+.++. ..+++++|.||.|.+ .|..... -...+.|+
T Consensus 853 ~e~i~~~~~k~~~~~~vv~veE~~~~gG~g~~v~~~l~~~~~~--~~~v~~vg~~d~~~pa~g~~~~h----~~~~~~i~ 926 (933)
T 2jgd_A 853 HKAMQEVLQQFAHVKDFVWCQEEPLNQGAWYCSQHHFREVIPF--GASLRYAGRPASASPAVGHMSVH----QKQQQDLV 926 (933)
T ss_dssp HHHHHHHHGGGTTCCEEEEEEEEETTSTTHHHHHHHHHTTSCT--TCEEEEEEECCCSSSSCSCHHHH----HHHHHHHH
T ss_pred HHHHHHHHHhCCCCceEEEEecCCCcCCHHHHHHHHHHHhccc--CCceEEEecCCcCCCCcCCHHHH----HHHHHHHH
Confidence 999999998887 899999987 799999999999887642 357999999999998 4543322 23456676
Q ss_pred HHHH
Q 004968 704 ATAL 707 (721)
Q Consensus 704 ~~i~ 707 (721)
+.+.
T Consensus 927 ~~a~ 930 (933)
T 2jgd_A 927 NDAL 930 (933)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6654
|
| >1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-62 Score=533.93 Aligned_cols=335 Identities=22% Similarity=0.307 Sum_probs=244.8
Q ss_pred EEeccCCCcc-cccccccccccccCCC-CCCCCCC--C---CcccHHHHHHHHHHHHHHcCCCeEEEecCCCCc----cC
Q 004968 365 VTEENRRAED-TQKSEAIEKQQEGASD-SNSLPFG--N---YSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMD----LS 433 (721)
Q Consensus 365 ~T~kg~G~~~-ae~~~~~~~~Hg~~~f-~~g~~~~--~---~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~----~~ 433 (721)
.|.|||||.| ||+ +.++||+..|| +||++.+ . ...+|+++|+++|.+++++|++|+++++|++.+ ..
T Consensus 10 ~t~kg~g~~~~a~~--~~~~~h~~~pf~~~g~~~~~~~~~m~~~~~~~a~~~aL~~l~~~d~~vv~~~~D~~~~~g~~~~ 87 (369)
T 1ik6_A 10 LVPRGSGMKETAAA--KFERNHMDSPDLGTDDDDKMVAGVVMMANMAKAINMALHEEMERDERVVVLGEDVGKKGGVFLV 87 (369)
T ss_dssp ------------------------------------CCSCEEEECHHHHHHHHHHHHHHHCTTEEEEEC---------CT
T ss_pred CCCCCCCCCcchhh--chhhhcccCCcCCCCCcccccccccCcccHHHHHHHHHHHHHccCCCEEEECCcccccCCcchh
Confidence 6999999999 988 78999999999 7787433 1 456899999999999999999999999999722 23
Q ss_pred hHHHHHhC-CCcEeeccccHHHHHHHHHHHHhCCCeeEEE-ecHhhHHHHHHHHHHHhhcC--------CcceEEEEcCC
Q 004968 434 LQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCI-IPSAFLQRAYDQVVNDVDQQ--------RLPVRFVITSA 503 (721)
Q Consensus 434 l~~f~~~f-p~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~-tys~Fl~ra~dqi~~~~a~~--------~lpVv~v~~~~ 503 (721)
++.|+++| |+||||+||+|++|+++|+|+|++|+|||++ +|++|++|++|||++++|++ ++||+++++++
T Consensus 88 ~~~~~~~~gp~r~~d~gIaE~~~v~~a~G~A~~G~rpv~~~tf~~Fl~~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~g 167 (369)
T 1ik6_A 88 TEGLYERFGPERVIDTPLNEGGILGFAMGMAMAGLKPVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVG 167 (369)
T ss_dssp TTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEECCCC----CCHHHHHHHHHHHHC------CCCCEEEEEEC
T ss_pred HHHHHHHhCCCcEEECcccHHHHHHHHHHHHHCCCeeEEEecchhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCC
Confidence 68899999 9999999999999999999999999999998 69999999999999999977 99999999999
Q ss_pred CCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEecCCCccc--ccCCCCCCcceecCce
Q 004968 504 GLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPRGAIVR--TDLPGYRGIPIEIGKG 581 (721)
Q Consensus 504 G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~~r~~~~~--~~~p~~~~~~~~~gk~ 581 (721)
|.+| +|+|||+.++ ++|+++|||+|++|+|++|++.++++|++ .++|++||+|+..... .+++. +.+.+++||+
T Consensus 168 g~~g-~g~~hs~~~~-a~l~~iPnl~V~~Psd~~e~~~ll~~A~~-~~~Pv~i~~p~~l~r~~~~~v~~-~~~~~~~G~~ 243 (369)
T 1ik6_A 168 SGTR-GGLYHSNSPE-AIFVHTPGLVVVMPSTPYNAKGLLKAAIR-GDDPVVFLEPKILYRAPREEVPE-GDYVVEIGKA 243 (369)
T ss_dssp C------------HH-HHHHTCTTCEEECCCSHHHHHHHHHHHHH-SSSCEEEEEEGGGSSCCCEEEEC-SSCCCCTTCC
T ss_pred CCCC-CCccccccHH-HHHcCCCCcEEEecCCHHHHHHHHHHHHh-CCCCEEEEEehhhhccCCCCcCC-CcccccCCce
Confidence 8777 8999999875 99999999999999999999999999987 7899999999875422 12332 2345789999
Q ss_pred EEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEcCCC-CCChHHHHHHH
Q 004968 582 KVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHVSHF 660 (721)
Q Consensus 582 ~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~~-~gG~gs~v~~~ 660 (721)
+++++|+|++||++|+++..|++|++.|+ | +++|||++|++|||++.+++++++++.+|++||+. .||||++|+++
T Consensus 244 ~v~~~g~dv~Iia~G~~v~~a~~Aa~~L~--G-~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GG~g~~v~~~ 320 (369)
T 1ik6_A 244 RVAREGDDVTLVTYGAVVHKALEAAERVK--A-SVEVVDLQTLNPLDFDTVLKSVSKTGRLIIAHDSPKTGGLGAEVRAL 320 (369)
T ss_dssp EEEECCSSEEEEECTTHHHHHHHHHHTSS--S-CEEEEECCEEETTCHHHHHHHHHHHCCEEEEEEEESTTSHHHHHHHH
T ss_pred EEEEcCCCEEEEEeCHHHHHHHHHHHHhC--C-CeEEEeeeecCCCCHHHHHHHHhccCeEEEEecCCcCCcHHHHHHHH
Confidence 99999999999999999999999999997 8 99999999999999999999988888899999997 79999999999
Q ss_pred HHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhh
Q 004968 661 IALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 711 (721)
Q Consensus 661 l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 711 (721)
+.++++.....++.++|++|.|+++|+ +++++|||+++|+++|+++++
T Consensus 321 l~~~~~~~l~~pv~~vg~~d~~~~~~~---l~~~~gl~~~~I~~~i~~~l~ 368 (369)
T 1ik6_A 321 VAEKALDRLTAPVIRLAGPDVPQSPIA---ADAAYAPTVERIIKAIEYVMR 368 (369)
T ss_dssp HHHHSGGGCSSCCEEEEECCCC---------------CHHHHHHHHHHHHT
T ss_pred HHhhCccccCCCeEEEcCCCcCCCCHH---HHHHhCcCHHHHHHHHHHHhh
Confidence 998875322467899999999999987 999999999999999998874
|
| >2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-57 Score=487.66 Aligned_cols=307 Identities=21% Similarity=0.287 Sum_probs=276.2
Q ss_pred CcccHHHHHHHHHHHHHHcCCCeEEEecCCCC--c-c-ChHHHHHhC-CCcEeeccccHHHHHHHHHHHHhCCCeeEEE-
Q 004968 399 YSRTYDDCFIEALVMEAEKDKDIVVVHAGMEM--D-L-SLQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCI- 472 (721)
Q Consensus 399 ~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~--~-~-~l~~f~~~f-p~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~- 472 (721)
...+|+++|+++|.+++++|++|+++++|++. + + .++.|+++| |+||||+||+|++|+++|+|+|++|+|||++
T Consensus 13 ~~~~~~~a~~~~L~~l~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~gp~r~~d~gIaE~~~v~~a~G~A~~G~rp~~~~ 92 (341)
T 2ozl_B 13 LQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEF 92 (341)
T ss_dssp CEEEHHHHHHHHHHHHHHHCTTEEEEETTSSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred ccccHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEe
Confidence 45789999999999999999999999999982 3 2 368899999 9999999999999999999999999999998
Q ss_pred ecHhhHHHHHHHHHHHhh--------cCCcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHH
Q 004968 473 IPSAFLQRAYDQVVNDVD--------QQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVA 544 (721)
Q Consensus 473 tys~Fl~ra~dqi~~~~a--------~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~ 544 (721)
+|++|++|++|||++++| ++++||++++++ |.+|.+|+||++..| ++++++|||+|++|+|++|++++++
T Consensus 93 ~f~~F~~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G~~g~~G~tHs~~~e-a~l~~iP~l~V~~Psd~~e~~~~l~ 170 (341)
T 2ozl_B 93 MTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-GASAGVAAQHSQCFA-AWYGHCPGLKVVSPWNSEDAKGLIK 170 (341)
T ss_dssp SSGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-SCCSSCCGGGCCCCH-HHHHTSTTCEEECCCSHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhccccCCCCEEEEEcC-cCCCCCCcchhhHHH-HHhccCCCCEEEEeCCHHHHHHHHH
Confidence 699999999999999998 399999999997 778899999987778 9999999999999999999999999
Q ss_pred HHHHhCCCCEEEEecCCCcc-cccC----CCCCCcceecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEe
Q 004968 545 TVASIDDRPVCFRYPRGAIV-RTDL----PGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVA 619 (721)
Q Consensus 545 ~a~~~~~~P~~ir~~r~~~~-~~~~----p~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VI 619 (721)
+|++ .++|++||+||+.+. ..++ ++ +.+.+++||++++++|+|++||+||+++..|++|++.|+++|++++||
T Consensus 171 ~a~~-~~~Pv~i~~~~~~~~~~~~v~p~~~~-~~~~~~~Gk~~v~~~g~dv~iia~Gs~~~~a~~Aa~~L~~~Gi~v~vv 248 (341)
T 2ozl_B 171 SAIR-DNNPVVVLENELMYGVPFEFPPEAQS-KDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVI 248 (341)
T ss_dssp HHHH-SSSCEEEEECHHHHTCEEECCHHHHS-TTCCCCTTCCEEEECCSSEEEEECSTHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHHh-cCCCEEEEEChhhhcCCCCcCCccCC-ccccccCCceEEeccCCCEEEEEeCHHHHHHHHHHHHHHhcCCCeEEE
Confidence 9987 589999999986421 1112 22 345678999999999999999999999999999999999999999999
Q ss_pred ecCccccccHHHHHHHhccCCeEEEEcCCC-CCChHHHHHHHHHh-cCCCCCCCceEEEecCCccccCCCHHHHHHHcCC
Q 004968 620 DARFCKPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHVSHFIAL-DGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGL 697 (721)
Q Consensus 620 d~~~l~PlD~e~i~~l~~~~~~vvvvEe~~-~gG~gs~v~~~l~~-~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl 697 (721)
|+++++|||++.+++++++++.+|+|||+. .||||++|++++.+ +++...+.+++++|+||.|+++|+ ++++++|+
T Consensus 249 ~~~~l~P~d~~~i~~~~~~~~~vv~vEe~~~~Gg~g~~v~~~l~~~~~~~~l~~~v~~ig~~d~~~~~g~--~l~~~~g~ 326 (341)
T 2ozl_B 249 NMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAK--ILEDNSIP 326 (341)
T ss_dssp ECCEEETCCHHHHHHHHHHHSCEEEECSSCSTTCHHHHHHHHHHHSTTGGGCSSCCEEECCCSSCCCSSH--HHHHTTSC
T ss_pred eeeeecCCCHHHHHHHHhcCCeEEEEecCcccCcHHHHHHHHHHhhhcccccCCCEEEEecCCcCCCCcH--HHHHHhCc
Confidence 999999999999999998888899999998 69999999999998 775223468899999999999986 68899999
Q ss_pred CHHHHHHHHHHHhh
Q 004968 698 TGHHIAATALSLLG 711 (721)
Q Consensus 698 ~~~~I~~~i~~~l~ 711 (721)
|+++|+++|+++++
T Consensus 327 ~~~~I~~~i~~~l~ 340 (341)
T 2ozl_B 327 QVKDIIFAIKKTLN 340 (341)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999998874
|
| >2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-57 Score=535.43 Aligned_cols=542 Identities=14% Similarity=0.086 Sum_probs=376.2
Q ss_pred cCCCccccCCCCHHHHHHHHHHH---HHHHHHhHhc-CCCCCCCcccH----HHHHHHHhcc-cCCCCcEEEecCCchHH
Q 004968 84 LVENPLRLKSLTIKELKQLAVEI---RSELSSIVSK-TEKSLKSSLAA----VELTVALHHV-FHAPVDKILWDVGEQTY 154 (721)
Q Consensus 84 ~i~~p~~~~~~~~~~l~~la~ei---R~~~~~~~~~-~~Gh~~sslg~----vel~~aL~~v-f~~p~D~iv~d~GH~~y 154 (721)
.+..+. .+++.+++..+.+.+ |.+=.....+ .+|-..+..|+ +.+..+|... -..++|.++. ..|+..
T Consensus 107 ~~e~~~--~~~s~e~~~~~y~~m~~~R~fE~~l~~~~~~~k~~g~~G~Ea~~~g~~~~l~~~~~l~~~D~v~g-m~hRg~ 183 (868)
T 2yic_A 107 RVETKH--DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKRFSLEGAETVIPMMDAVIDQCAEHGLDEVVIA-MPHRGR 183 (868)
T ss_dssp HHSSCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGGGCCTTCTTHHHHHHHHHHHHHHTTCSEEEEE-CCSTTH
T ss_pred HhccCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHHHHHHHHhhhCCCCCEEEe-ccccch
Confidence 444433 578888877765544 3322222221 12222233554 3333333211 1136776653 469998
Q ss_pred HHHHH--hCchhhhHHHHhhCCC-CCC-CCC-CC-CCC-------------------CCcCcCCCcchHHHHHHHHHHHH
Q 004968 155 AHKIL--TGRRSLIHTLRKKDGI-SGY-TSR-SE-SEY-------------------DPFNAGHGCNSVSAGLGMAVARD 209 (721)
Q Consensus 155 ~h~~l--tGr~~~~~~~r~~ggl-~G~-~~~-~e-s~~-------------------d~~~~G~~G~~is~A~G~AlA~~ 209 (721)
.|.+. .|.... ..+.++.|. .|. .+. ++ +.| ....+||+|+++|+|+|+|+|.+
T Consensus 184 ~~~Lan~~G~~~~-~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~Lg~~~P~A~G~A~A~k 262 (868)
T 2yic_A 184 LNVLANIVGKPYS-QIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAVDPVLEGLVRAKQ 262 (868)
T ss_dssp HHHHHHTTCCCHH-HHTTTCC------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSSTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHH-HHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCccccccccHHHHHHHHHH
Confidence 88888 664221 223444332 222 011 11 111 01235789999999999999998
Q ss_pred HcC----------CCCeEEEEEcCCCc-ccchHHHHHHHhhhcCCC---EEEEEECCCCCcCCCccCCCCcchhhhhhhh
Q 004968 210 IKG----------KRECIVTVISNGTT-MAGQAYEAMSNAGYLDSN---MIVILNDSRHSLHPKIEESPKTSINALSSTL 275 (721)
Q Consensus 210 l~g----------~~~~VvaviGDGal-~~G~~~Ealn~A~~~~~p---livIv~dN~~~s~~t~~~~~~~~~g~l~~~l 275 (721)
+++ .+..+||++|||++ ++|.+||+||+|+.+++| +|+||+||++. +.| +..
T Consensus 263 ~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN~~g-~st-------~~~------ 328 (868)
T 2yic_A 263 DLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIG-FTT-------APT------ 328 (868)
T ss_dssp HHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEECSCB-TTB-------CHH------
T ss_pred hhccCCcccccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcCCcc-ccc-------Ccc------
Confidence 764 66899999999996 899999999999999987 99999999872 211 100
Q ss_pred hhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhc-
Q 004968 276 SRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL- 354 (721)
Q Consensus 276 ~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~- 354 (721)
.. +. .++...+++++||.++ .|||||++++.+++++|.+.
T Consensus 329 -~~-----------------------------------~s--~~~~~~~a~a~G~p~~-~VdG~D~~av~~a~~~A~~~a 369 (868)
T 2yic_A 329 -DS-----------------------------------RS--SEYCTDVAKMIGAPIF-HVNGDDPEACAWVARLAVDFR 369 (868)
T ss_dssp -HH-----------------------------------CS--SSSTTGGGGGGTCCEE-EEETTCHHHHHHHHHHHHHHH
T ss_pred -cc-----------------------------------cc--ccCHHHHHHhCCCcEE-EEeCCCHHHHHHHHHHHHHHH
Confidence 00 00 0112457889999998 78999999999999887631
Q ss_pred -CCCCCEEEEEEEeccCCCccccccc-----ccccccccC-C--------------------------------------
Q 004968 355 -GSMGPVLVHVVTEENRRAEDTQKSE-----AIEKQQEGA-S-------------------------------------- 389 (721)
Q Consensus 355 -~~~~P~lI~v~T~kg~G~~~ae~~~-----~~~~~Hg~~-~-------------------------------------- 389 (721)
..++|++|+++|.+++|+...+... ....|+... |
T Consensus 370 r~~~~PvlIe~~tyR~~GHs~~D~p~~~~p~~~~~~~~~~dPi~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~ 449 (868)
T 2yic_A 370 QAFKKDVVIDMLCYRRRGHNEGDDPSMTQPYMYDVIDTKRGSRKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVR 449 (868)
T ss_dssp HHHCCCEEEEEECCCCSCSSTTCCGGGTCHHHHHHHTTCCCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCEEEEEEeecCCCcCcccccccCChHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1478999999999999987654200 001122110 0
Q ss_pred ----------------------CCCCCC-------------CC---CCcccH------HH----------HHHHHH--HH
Q 004968 390 ----------------------DSNSLP-------------FG---NYSRTY------DD----------CFIEAL--VM 413 (721)
Q Consensus 390 ----------------------f~~g~~-------------~~---~~~~~~------~~----------~~~~~L--~~ 413 (721)
..|+-. .+ ...... +. +++++| ..
T Consensus 450 ~~~p~~~~~~~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~~~p~~~~~~~~v~~~~~~R~~m~~~~~i~~a~~e~la~~~ 529 (868)
T 2yic_A 450 ELEKHEIEPSESVEADQQIPSKLATAVDKAMLQRIGDAHLALPEGFTVHPRVRPVLEKRREMAYEGRIDWAFAELLALGS 529 (868)
T ss_dssp HHHHC-----------------CCCCCCHHHHHHHHHHTTCCCTTCCCCTTTHHHHHHHHHHHHHCCBCHHHHHHHHHHH
T ss_pred hcCCCCcccccccccccccccCCCCccCHHHHHHHHHhhccCCcccccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 001000 00 000010 11 233332 24
Q ss_pred HHHcCCCeEEEecCCCCcc------------------ChHHH------HH-hCCCcEeeccccHHHHHHHHHHHHhCCCe
Q 004968 414 EAEKDKDIVVVHAGMEMDL------------------SLQLF------QE-KFPERYFDVGMAEQHAVTFSAGLACGGLK 468 (721)
Q Consensus 414 ~~~~d~~iv~i~ad~~~~~------------------~l~~f------~~-~fp~R~~d~GIaE~~~v~~AaGlA~~G~~ 468 (721)
++++|++|+++++|++.+| .++.| ++ .+|+||||+||||++++|+|+|+|+.|.+
T Consensus 530 l~~~~~~V~~~G~Dv~~~Tfs~rh~v~~d~~~g~~~~~~~~l~~~~~~~~~~~p~Rv~ds~IsE~~~vG~a~G~A~~G~~ 609 (868)
T 2yic_A 530 LIAEGKLVRLSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEYGYSVGNPD 609 (868)
T ss_dssp HHHTTCEEEEEETTTTTCTTSCCCSSEECTTTCCEECGGGGGGBCTTSCBCSCEEEEEECCSCSHHHHHHHHHHHHHCTT
T ss_pred HHhcCCCEEEEcCcCCccchhhcchhccccCCCceecchhhhcccccchhhcCCcEEEECCccHHHHHHHHHHHHccCCC
Confidence 5899999999999998752 25778 55 78999999999999999999999999954
Q ss_pred --eEEE-ecHhhHHHH---HHHHHHHh---hcCCcceEEEEcCCCCcCCCCCCcCc--HHHHHHHccCCCcEEEeeCCHH
Q 004968 469 --PFCI-IPSAFLQRA---YDQVVNDV---DQQRLPVRFVITSAGLVGSDGPTQCG--AFDITFMSCLPNMIVMAPSDED 537 (721)
Q Consensus 469 --p~~~-tys~Fl~ra---~dqi~~~~---a~~~lpVv~v~~~~G~~G~dG~TH~~--~~dia~~~~iPnl~V~~Psd~~ 537 (721)
|+++ +|++|+++| +||+++++ ..+++||+++++++| .| +||+|++ .+++..|+++|||+|++|+|+.
T Consensus 610 ~~~i~eaqf~dF~~~AQ~~~DQ~i~~~~~k~~~~~~vvi~~p~G~-~G-~Gp~Hs~~~~E~~l~l~~~pnm~V~~Ps~p~ 687 (868)
T 2yic_A 610 AMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGH-EG-QGPDHTSGRIERFLQLWAEGSMTIAMPSTPA 687 (868)
T ss_dssp SEEEEECSSGGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCC-SS-SCTTSSCCCHHHHHHHCCTTSCEEECCCSHH
T ss_pred CceEEEEehHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEecCCC-CC-CChhhcCCcHHHHHhcCCCCCCEEEEeCCHH
Confidence 5444 599999887 99999886 357999999999877 67 9999998 7777777999999999999999
Q ss_pred HHHHHHHHHHHhC-CCCEEEEecCCCcccc-cCCCC-----CCcceecCceEE---EEeCCcE--EEEEechhhHHHHHH
Q 004968 538 ELVDMVATVASID-DRPVCFRYPRGAIVRT-DLPGY-----RGIPIEIGKGKV---LVEGKDV--ALLGYGAMVQNCLKA 605 (721)
Q Consensus 538 E~~~~l~~a~~~~-~~P~~ir~~r~~~~~~-~~p~~-----~~~~~~~gk~~v---l~eG~dv--~Iva~Gs~v~~al~A 605 (721)
|++.++++++..+ ++|++|++||..+... .++.. ..+..++|++.+ +++|+|| +|||+|.+ ..+++|
T Consensus 688 ~~~~lLr~a~~~~~~~Pvii~~pk~llR~~~~~~~~~~~~~~~f~~~ig~~~~~~~l~~g~dv~r~Ii~~G~~-~~~l~a 766 (868)
T 2yic_A 688 NYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTESKFRSVLEEPMYTDGEGDRNKVTRLLLTSGKI-YYELAA 766 (868)
T ss_dssp HHHHHHHHHHHSSCCCCEEEEECSGGGGCTTSCBCHHHHHSCCCCSEECCHHHHTSSCCGGGCCEEEEECSTH-HHHHHH
T ss_pred HHHHHHHHHHhcCCCCcEEEEechHHhCCCCCCCCccccCCCCceecCCcceeecccccCCceeEEEEEecHH-HHHHHH
Confidence 9999999987642 4999999999854221 11110 112237898887 7899999 99999998 677766
Q ss_pred HHHHHhCC-CCeEEeecCccccccHHHHHHHhccCCe---EEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCC
Q 004968 606 RALLSKLG-IDVTVADARFCKPLDIKLVRELCQNHTF---LITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPD 680 (721)
Q Consensus 606 a~~L~~~G-i~v~VId~~~l~PlD~e~i~~l~~~~~~---vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d 680 (721)
++ +++| ++++|||+++|+|||.++|.+++++++. ||++||+. .||++++|++.+.+. +...+.+++++|.||
T Consensus 767 a~--~~~g~i~v~VIdl~~l~Pld~~~i~~~~~k~~~~~~vv~veE~~~~gG~g~~v~~~l~e~-~~~l~~~v~~vg~~d 843 (868)
T 2yic_A 767 RK--AKENREDVAIVRIEQLAPLPRRRLAETLDRYPNVKEKFWVQEEPANQGAWPSFGLTLPEI-LPDHFTGLKRISRRA 843 (868)
T ss_dssp HH--HHHTCTTEEEEEECEEESCCHHHHHHHHHTCTTCCEEEEEEEEETTSTTHHHHHHHHHHH-CHHHHTTCEEEEECC
T ss_pred HH--HhCCCCCEEEEEeeecCCCCHHHHHHHHHhcCCCceEEEEEeCCCCCCcHHHHHHHHHHH-hhhcCCCeEEeccCC
Confidence 66 5679 9999999999999999999999988876 88888876 799999999999873 211124789999999
Q ss_pred ccccC-CCH
Q 004968 681 NYIEH-ASP 688 (721)
Q Consensus 681 ~f~~~-g~~ 688 (721)
.|.+. |..
T Consensus 844 ~~~p~~g~~ 852 (868)
T 2yic_A 844 MSAPSSGSS 852 (868)
T ss_dssp CSSSSCSCH
T ss_pred cCCCCCCCH
Confidence 99984 544
|
| >1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-57 Score=483.87 Aligned_cols=304 Identities=23% Similarity=0.311 Sum_probs=273.9
Q ss_pred ccHHHHHHHHHHHHHHcCCCeEEEecCCCC--cc--ChHHHHHhC-CCcEeeccccHHHHHHHHHHHHhCCCeeEEE-ec
Q 004968 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEM--DL--SLQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCI-IP 474 (721)
Q Consensus 401 ~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~--~~--~l~~f~~~f-p~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~-ty 474 (721)
.+|+++|+++|.+++++||+|+++++|++. ++ .+..|+++| |+||||+||+|++|+++|+|+|++|+|||++ +|
T Consensus 3 ~~~~~a~~~~L~~l~~~~~~vv~~~~d~~~~~g~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~rp~~~~t~ 82 (324)
T 1w85_B 3 MTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGIGGLAIGLALQGFRPVPEIQF 82 (324)
T ss_dssp ECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEBCSS
T ss_pred chHHHHHHHHHHHHHhHCcCEEEEcCcccccCCcchhHHHHHHHhCCCcEEEcchhHHHHHHHHHHHHhCCCEEEEEecc
Confidence 589999999999999999999999999975 32 357899999 9999999999999999999999999999998 69
Q ss_pred HhhHHHHHHHHHHHhhc--------CCcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHH
Q 004968 475 SAFLQRAYDQVVNDVDQ--------QRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATV 546 (721)
Q Consensus 475 s~Fl~ra~dqi~~~~a~--------~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a 546 (721)
++|++|++|||++++|+ +++||+++.++ |..|.+|+||++ +|.++++++|||+|++|+|++|+++++++|
T Consensus 83 ~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-g~~~~~g~~hs~-~~~a~~~~iP~l~V~~Psd~~e~~~~l~~a 160 (324)
T 1w85_B 83 FGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPF-GGGVHTPELHSD-SLEGLVAQQPGLKVVIPSTPYDAKGLLISA 160 (324)
T ss_dssp GGGGGGTHHHHHTTGGGHHHHTTTSSCCCCEEEEEE-CSSSCCCTTSSC-CCHHHHTTSTTCEEECCSSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhhhccCCCcCCEEEEEec-cCCCCCCCcccc-cHHHHHccCCCCEEEeeCCHHHHHHHHHHH
Confidence 99999999999999997 89999999885 666788889888 666999999999999999999999999999
Q ss_pred HHhCCCCEEEEecCCCccc--ccCCCCCCcceecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCcc
Q 004968 547 ASIDDRPVCFRYPRGAIVR--TDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFC 624 (721)
Q Consensus 547 ~~~~~~P~~ir~~r~~~~~--~~~p~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l 624 (721)
++ .++|++||+|+..... .++|. +.+.+++||++++++|+|++||+||++++.|++|++.|+++||+++|||++++
T Consensus 161 ~~-~~~Pv~i~~p~~l~r~~~~~~~~-~~~~~~~Gk~~~~~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l 238 (324)
T 1w85_B 161 IR-DNDPVIFLEHLKLYRSFRQEVPE-GEYTIPIGKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRTV 238 (324)
T ss_dssp HH-SSSCEEEEEETTTSSSCCEECCS-SCCCCCTTCCEEEECCSSEEEEECTTHHHHHHHHHHHHHHTTCCEEEEECSEE
T ss_pred HH-cCCCEEEEechHhcCCCCCCCCC-ccccccCCceEEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEeeee
Confidence 87 7899999999876422 23332 24567899999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHhccCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHH
Q 004968 625 KPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIA 703 (721)
Q Consensus 625 ~PlD~e~i~~l~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~ 703 (721)
+|||++.+++++++++.+|++||+. .||||++|++++.++++.....+++++|+||.|+++|+ +++++|+|+++|+
T Consensus 239 ~P~d~~~i~~~~~~~~~vvvvEe~~~~Gg~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~~---l~~~~gl~~~~I~ 315 (324)
T 1w85_B 239 QPLDIETIIGSVEKTGRAIVVQEAQRQAGIAANVVAEINERAILSLEAPVLRVAAPDTVYPFAQ---AESVWLPNFKDVI 315 (324)
T ss_dssp ESCCHHHHHHHHHHHSCEEEEEEEETTSSSHHHHHHHHHHHHGGGCSSCCEEEEECSSSSCCGG---GHHHHSCCHHHHH
T ss_pred cCCCHHHHHHHHhhCCcEEEEeCCCcCChHHHHHHHHHHhhCccccCCCeEEEecCCcCCCcHH---HHHHhCcCHHHHH
Confidence 9999999999998888999999997 79999999999998865323467899999999999987 9999999999999
Q ss_pred HHHHHHhh
Q 004968 704 ATALSLLG 711 (721)
Q Consensus 704 ~~i~~~l~ 711 (721)
++|+++++
T Consensus 316 ~~i~~~l~ 323 (324)
T 1w85_B 316 ETAKKVMN 323 (324)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 99998864
|
| >1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-56 Score=478.64 Aligned_cols=304 Identities=24% Similarity=0.259 Sum_probs=272.9
Q ss_pred cccHHHHHHHHHHHHHHcCCCeEEEecCCCCcc----ChHHHHHhC-CCcEeeccccHHHHHHHHHHHHhCCCeeEEE-e
Q 004968 400 SRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDL----SLQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCI-I 473 (721)
Q Consensus 400 ~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~----~l~~f~~~f-p~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~-t 473 (721)
..+|+++|+++|.+++++|++|+++++|++.+. .+..|+++| |+||||+||+|++|+++|+|+|++|+|||++ +
T Consensus 3 ~~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~~p~~~~t 82 (324)
T 1umd_B 3 LMTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEIQ 82 (324)
T ss_dssp EECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEECS
T ss_pred CCcHHHHHHHHHHHHHhcCCCEEEECCcccccCCcchhhHHHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEec
Confidence 368999999999999999999999999997522 357899999 9999999999999999999999999999998 6
Q ss_pred cHhhHHHHHHHHHHHhhc--------CCcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 004968 474 PSAFLQRAYDQVVNDVDQ--------QRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVAT 545 (721)
Q Consensus 474 ys~Fl~ra~dqi~~~~a~--------~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~ 545 (721)
|++|++|++|||++++|+ +++|++++.++ |..|.+|+|||+ +|+++++++||++|++|+|++|++.++++
T Consensus 83 ~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-g~~~~~g~~hs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~ 160 (324)
T 1umd_B 83 FADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPS-GGGVRGGHHHSQ-SPEAHFVHTAGLKVVAVSTPYDAKGLLKA 160 (324)
T ss_dssp SGGGCGGGHHHHHHTTTTHHHHTTTSSCCCCEEEEEE-CSSSSCGGGSSC-CCHHHHHTSTTCEEEECCSHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHhhcCCCCcCCEEEEEcC-CCCCCCCCccch-hHHHHHhcCCCCEEEEeCCHHHHHHHHHH
Confidence 999999999999999997 89999999985 666778888888 67799999999999999999999999999
Q ss_pred HHHhCCCCEEEEecCCCccc--ccCCCCCCcceecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCc
Q 004968 546 VASIDDRPVCFRYPRGAIVR--TDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARF 623 (721)
Q Consensus 546 a~~~~~~P~~ir~~r~~~~~--~~~p~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ 623 (721)
|++ .++|++||+|+..... .++|. +.+.+++||++++++|+|++||+||++++.|++|++.|+++||+++|||+++
T Consensus 161 a~~-~~~Pv~i~~p~~l~~~~~~~~~~-~~~~~~~Gk~~~~~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~ 238 (324)
T 1umd_B 161 AIR-DEDPVVFLEPKRLYRSVKEEVPE-EDYTLPIGKAALRREGKDLTLICYGTVMPEVLQAAAELAKAGVSAEVLDLRT 238 (324)
T ss_dssp HHH-CSSCEEEEEEGGGSSSCCEECCS-SCCCCCTTCCEEEECCSSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECCE
T ss_pred HHh-cCCCEEEEechHhcCCCCCCcCC-CCccccCCcceEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEece
Confidence 986 7899999998865422 23332 2355789999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHhccCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHH
Q 004968 624 CKPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHI 702 (721)
Q Consensus 624 l~PlD~e~i~~l~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I 702 (721)
++|||++.+++++++++.+|++||+. .||||++|++++.++++...+.++.++|+||.|+++| +++++|+|+++|
T Consensus 239 l~P~d~~~i~~~~~~~~~vv~vEe~~~~gG~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~----l~~~~g~~~~~I 314 (324)
T 1umd_B 239 LMPWDYEAVMNSVAKTGRVVLVSDAPRHASFVSEVAATIAEDLLDMLLAPPIRVTGFDTPYPYA----QDKLYLPTVTRI 314 (324)
T ss_dssp EETCCHHHHHHHHHHHSCEEEEEEEESTTCHHHHHHHHHHHHHGGGCSSCCEEEEECSSCCCST----THHHHSCCHHHH
T ss_pred ecCCCHHHHHHHHhcCCeEEEEecCCcCCCHHHHHHHHHHHhCccccCCCeEEEeCCCCCCCHH----HHHHhCcCHHHH
Confidence 99999999999988888999999997 7999999999998876522246789999999999998 899999999999
Q ss_pred HHHHHHHhh
Q 004968 703 AATALSLLG 711 (721)
Q Consensus 703 ~~~i~~~l~ 711 (721)
+++++++++
T Consensus 315 ~~~i~~~l~ 323 (324)
T 1umd_B 315 LNAAKRALD 323 (324)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999998864
|
| >2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-56 Score=542.49 Aligned_cols=536 Identities=13% Similarity=0.076 Sum_probs=373.1
Q ss_pred CCCCHHHHHHHHHHH---HHHHHHhHhc-CCCCCCCcccH----HHHHHHHhcc-cCCCCcEEEecCCchHHHHHHH--h
Q 004968 92 KSLTIKELKQLAVEI---RSELSSIVSK-TEKSLKSSLAA----VELTVALHHV-FHAPVDKILWDVGEQTYAHKIL--T 160 (721)
Q Consensus 92 ~~~~~~~l~~la~ei---R~~~~~~~~~-~~Gh~~sslg~----vel~~aL~~v-f~~p~D~iv~d~GH~~y~h~~l--t 160 (721)
.+++.+++..+.+.+ |.+=.....+ .+|-..+..|+ +.+..+|... -..++|.++. ..||...|.+. .
T Consensus 358 ~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~~k~~g~~GqEa~~~g~~~~l~~~~~l~~~D~v~g-m~hRg~~~~La~~~ 436 (1113)
T 2xt6_A 358 DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKRFSLEGAETVIPMMDAVIDQCAEHGLDEVVIA-MPHRGRLNVLANIV 436 (1113)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGGGCCTTCTTHHHHHHHHHHHHHHTTCSEEEEE-CCSTTHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHHHHHHHHhhhCCCCCEEEe-ccccchHHHHHHHh
Confidence 568888877765544 3322222221 12222223554 3333333211 1146676653 46999988888 6
Q ss_pred CchhhhHHHHhhCCC-CCC-CCC-CC-CCC-------------------CCcCcCCCcchHHHHHHHHHHHHHcC-----
Q 004968 161 GRRSLIHTLRKKDGI-SGY-TSR-SE-SEY-------------------DPFNAGHGCNSVSAGLGMAVARDIKG----- 212 (721)
Q Consensus 161 Gr~~~~~~~r~~ggl-~G~-~~~-~e-s~~-------------------d~~~~G~~G~~is~A~G~AlA~~l~g----- 212 (721)
|.... ..+.++.|. .|. .+. ++ +.| ....+||+|+++|.|+|+|+|.++++
T Consensus 437 G~~~~-~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~Lg~~~p~A~G~A~A~k~~~~~~~~ 515 (1113)
T 2xt6_A 437 GKPYS-QIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAVDPVLEGLVRAKQDLLDTGEE 515 (1113)
T ss_dssp CCCHH-HHSTTC-------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSSTTTTHHHHHHHHHHHHHHTTBSTT
T ss_pred CCCHH-HHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCccccccccHHHHHHHHHHHhccccCc
Confidence 64221 223343332 222 011 11 111 01235899999999999999999876
Q ss_pred -----CCCeEEEEEcCCCc-ccchHHHHHHHhhhcCCC---EEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 213 -----KRECIVTVISNGTT-MAGQAYEAMSNAGYLDSN---MIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 213 -----~~~~VvaviGDGal-~~G~~~Ealn~A~~~~~p---livIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
.+..+||++|||++ ++|.+||+||+|+.+++| +|+||+||++. +.| +.. ..
T Consensus 516 ~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN~~g-ist-------~~~-------~~----- 575 (1113)
T 2xt6_A 516 GSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIG-FTT-------APT-------DS----- 575 (1113)
T ss_dssp SSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEECSCB-TTB-------CHH-------HH-----
T ss_pred cccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeCCcc-ccc-------Ccc-------cc-----
Confidence 57899999999996 899999999999999987 99999999873 211 110 00
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhc--CCCCCEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL--GSMGPVL 361 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~--~~~~P~l 361 (721)
+. .+....+++++||.++ .|||||++++.+++++|.+. ..++|++
T Consensus 576 ------------------------------~s--~~~~~~~a~a~G~p~~-~VdG~D~~av~~a~~~A~~~~r~~~~Pvl 622 (1113)
T 2xt6_A 576 ------------------------------RS--SEYCTDVAKMIGAPIF-HVNGDDPEACAWVARLAVDFRQAFKKDVV 622 (1113)
T ss_dssp ------------------------------CS--SSSTTGGGGGGTCCEE-EEETTCHHHHHHHHHHHHHHHHHHCCCEE
T ss_pred ------------------------------cc--ccCHHHHHHhcCCcEE-EEcCCCHHHHHHHHHHHHHHHHhcCCCEE
Confidence 00 0112357889999998 78999999999998877541 1478999
Q ss_pred EEEEEeccCCCccccccc-----cccccccc-CC----------------------------------------------
Q 004968 362 VHVVTEENRRAEDTQKSE-----AIEKQQEG-AS---------------------------------------------- 389 (721)
Q Consensus 362 I~v~T~kg~G~~~ae~~~-----~~~~~Hg~-~~---------------------------------------------- 389 (721)
|+++|.+++|+...+... .-.+|+.. .|
T Consensus 623 Ie~~tyR~~GHs~~D~p~~~~~~~~~~~~~~~dpi~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~~~~~~~~ 702 (1113)
T 2xt6_A 623 IDMLCYRRRGHNEGDDPSMTQPYMYDVIDTKRGSRKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRELEKHEIE 702 (1113)
T ss_dssp EEEECCCCSCSSTTCCGGGTCHHHHHHHTTCCCHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred EEEEeEccCCcCCCCccccCChHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 999999999987654200 00011100 00
Q ss_pred --------------CCCCCC-------------CC---CCcccH------HH------HHHHHHHH------HHHcCCCe
Q 004968 390 --------------DSNSLP-------------FG---NYSRTY------DD------CFIEALVM------EAEKDKDI 421 (721)
Q Consensus 390 --------------f~~g~~-------------~~---~~~~~~------~~------~~~~~L~~------~~~~d~~i 421 (721)
..|+-. .+ ...+.. +. ++..++.+ ++++|++|
T Consensus 703 ~~~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~~~p~~~~~~~~v~~~~~~r~~m~~~~~i~~a~~e~la~~~ll~~~~~V 782 (1113)
T 2xt6_A 703 PSESVEADQQIPSKLATAVDKAMLQRIGDAHLALPEGFTVHPRVRPVLEKRREMAYEGRIDWAFAELLALGSLIAEGKLV 782 (1113)
T ss_dssp --------------CCCCCCHHHHHHHHHHTTCCCTTCCCCTTTHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTTCEE
T ss_pred cccccccccccccCCCCccCHHHHHHHHHhhccCCcccccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhcCCCE
Confidence 001100 00 000010 10 11122333 48999999
Q ss_pred EEEecCCCCcc------------------ChHHH------HH-hCCCcEeeccccHHHHHHHHHHHHhCCCe--eEEE-e
Q 004968 422 VVVHAGMEMDL------------------SLQLF------QE-KFPERYFDVGMAEQHAVTFSAGLACGGLK--PFCI-I 473 (721)
Q Consensus 422 v~i~ad~~~~~------------------~l~~f------~~-~fp~R~~d~GIaE~~~v~~AaGlA~~G~~--p~~~-t 473 (721)
+++++|++.|| .++.| .+ .+|+||||+||||++++|+|+|+|++|.+ |+++ +
T Consensus 783 ~l~GeDv~rgtfs~rh~v~~d~~~g~~~~~l~~l~~~~~~~~~~~p~rv~ds~IsE~~~vg~a~G~A~~G~~~~~i~Eaq 862 (1113)
T 2xt6_A 783 RLSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQ 862 (1113)
T ss_dssp EEEETTTTTCTTSCCCSSEECTTTCCEECGGGGGGBCTTSCBCSCEEEEEECCSCSHHHHHHHHHHHHHCTTSEEEEECS
T ss_pred EEEcccCCCccchhcchheecccCCceecchhccccccccchhcCCcEEEECCCCHHHHHHHHHHHHhcCCCCceEEEEE
Confidence 99999998764 36788 65 78999999999999999999999999954 5555 5
Q ss_pred cHhhHHHH---HHHHHHHh---hcCCcceEEEEcCCCCcCCCCCCcCc--HHHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 004968 474 PSAFLQRA---YDQVVNDV---DQQRLPVRFVITSAGLVGSDGPTQCG--AFDITFMSCLPNMIVMAPSDEDELVDMVAT 545 (721)
Q Consensus 474 ys~Fl~ra---~dqi~~~~---a~~~lpVv~v~~~~G~~G~dG~TH~~--~~dia~~~~iPnl~V~~Psd~~E~~~~l~~ 545 (721)
|++|+++| +||+++++ .++++||+++++++| .| +||+||+ .+++..++++|||+|++|+|+.|++.+|++
T Consensus 863 f~dF~~~aQ~~~DQ~i~~~~~k~~~~~~vv~~lp~G~-~G-~G~~Hs~~~~E~~l~l~~~pnm~V~~Ps~~~~~~~lLr~ 940 (1113)
T 2xt6_A 863 FGDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGH-EG-QGPDHTSGRIERFLQLWAEGSMTIAMPSTPANYFHLLRR 940 (1113)
T ss_dssp SGGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCC-SS-SCTTSSCCCHHHHHHHCCTTSCEEECCSSHHHHHHHHHH
T ss_pred EHHHHhhhHHHHHHHHHHHHHHhCCCCCEEEEeCCCC-CC-CChhhhcccHHHHHhcCCCCCcEEEecCCHHHHHHHHHH
Confidence 99999877 99999987 467999999999877 67 8999999 555555599999999999999999999999
Q ss_pred HHHhC-CCCEEEEecCCCcccc-cCCCC-----CCcceecCceEE---EEeCCcE--EEEEechhhHHHHHHHHHHHhCC
Q 004968 546 VASID-DRPVCFRYPRGAIVRT-DLPGY-----RGIPIEIGKGKV---LVEGKDV--ALLGYGAMVQNCLKARALLSKLG 613 (721)
Q Consensus 546 a~~~~-~~P~~ir~~r~~~~~~-~~p~~-----~~~~~~~gk~~v---l~eG~dv--~Iva~Gs~v~~al~Aa~~L~~~G 613 (721)
++..+ ++|++|++||..+... .++.. ..+..++|++.+ +++|+|| +|||||.+ ..+++|++ +++|
T Consensus 941 a~~~~~~~Pvii~~pk~L~R~~~~~~~~~~~~~~~f~~~ig~~~~~~~l~~g~dv~r~iv~~G~~-~~~l~aa~--~~~g 1017 (1113)
T 2xt6_A 941 HGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTESKFRSVLEEPMYTDGEGDRNKVTRLLLTSGKI-YYELAARK--AKEN 1017 (1113)
T ss_dssp HHHSSCCCCEEEEECSGGGSCSSSCBCHHHHHSCCCCSEECCHHHHTSCCCSTTCCEEEEECSTH-HHHHHHHH--HHHT
T ss_pred HHhccCCCCEEEEechHHhCCCCCCCcccccCCCCccccCCcceeeccccCccccCEEEEEECHH-HHHHHHHH--HhCC
Confidence 88643 4899999999854221 11110 123337899887 7899999 99999998 77777776 5679
Q ss_pred -CCeEEeecCccccccHHHHHHHhccCCe---EEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccC-CC
Q 004968 614 -IDVTVADARFCKPLDIKLVRELCQNHTF---LITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEH-AS 687 (721)
Q Consensus 614 -i~v~VId~~~l~PlD~e~i~~l~~~~~~---vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~-g~ 687 (721)
++++|||+++|+|||+++|.++++++++ ||++||+. .||++++|++.+.+. +...+.+++++|.||.|.+. |.
T Consensus 1018 ~i~v~VIdl~~l~Pld~~~i~~~~~k~~~~~~vv~veE~~~~gG~gs~v~~~l~e~-~~~l~~~~~~vg~~d~~~p~~g~ 1096 (1113)
T 2xt6_A 1018 REDVAIVRIEQLAPLPRRRLAETLDRYPNVKEKFWVQEEPANQGAWPSFGLTLPEI-LPDHFTGLKRISRRAMSAPSSGS 1096 (1113)
T ss_dssp CTTEEEEEESEEESCCHHHHHHHHTTCTTCCEEEEEEEEETTSTTHHHHHHHHHHH-SHHHHTTCEEEEECCCSSSSCSC
T ss_pred CCCEEEEEeeeecCCCHHHHHHHHHhCCCCceEEEEecCCCCCCcHHHHHHHHHHH-hhhcCCCeEEEccCCcCCCCCCC
Confidence 9999999999999999999999998877 88898886 799999999999873 21112478999999999984 54
Q ss_pred H
Q 004968 688 P 688 (721)
Q Consensus 688 ~ 688 (721)
.
T Consensus 1097 ~ 1097 (1113)
T 2xt6_A 1097 S 1097 (1113)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-55 Score=478.46 Aligned_cols=304 Identities=18% Similarity=0.264 Sum_probs=270.9
Q ss_pred cccHHHHHHHHHHHHHHcCCCeEEEecCCCC-cc--ChHHHHHhC-CCcEeeccccHHHHHHHHHHHHhCCCeeEEE-ec
Q 004968 400 SRTYDDCFIEALVMEAEKDKDIVVVHAGMEM-DL--SLQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCI-IP 474 (721)
Q Consensus 400 ~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~-~~--~l~~f~~~f-p~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~-ty 474 (721)
..+|+++|+++|.+++++||+|+++++|++. ++ .++.|+++| |+||||+||+|++|+++|+|+|++|+|||++ +|
T Consensus 20 ~~~~~~a~~~aL~~l~~~~~~vv~~~~D~~~~gt~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~rp~~~~tf 99 (342)
T 2bfd_B 20 KMNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQF 99 (342)
T ss_dssp EECHHHHHHHHHHHHHHHCTTCEEEETTTTTTCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CccHHHHHHHHHHHHHhcCCCEEEEcCccCCCcccchHHHHHHHhCCCeEEEcCcCHHHHHHHHHHHHHCCCeeEEEecc
Confidence 4689999999999999999999999999973 22 458899999 9999999999999999999999999999997 69
Q ss_pred HhhHHHHHHHHHHHhhcCCc---------ceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 004968 475 SAFLQRAYDQVVNDVDQQRL---------PVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVAT 545 (721)
Q Consensus 475 s~Fl~ra~dqi~~~~a~~~l---------pVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~ 545 (721)
++|++|++|||+|++|++++ ||+++++++|. .||+|||+++|+++++++|||+|++|+|++|++.++++
T Consensus 100 ~~F~~~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g~--~~G~th~~~~d~~~l~~iP~l~V~~Psd~~e~~~~l~~ 177 (342)
T 2bfd_B 100 ADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCV--GHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLS 177 (342)
T ss_dssp GGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESCC--SSCGGGSSCCCHHHHHTSTTCEEECCSSHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCCC--CCCcchhhHhHHHHHhcCCCcEEEeeCCHHHHHHHHHH
Confidence 99999999999999996655 99999998773 58999999999999999999999999999999999999
Q ss_pred HHHhCCCCEEEEecCCCccc--ccCCCCCCcceecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhC-CCCeEEeecC
Q 004968 546 VASIDDRPVCFRYPRGAIVR--TDLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKL-GIDVTVADAR 622 (721)
Q Consensus 546 a~~~~~~P~~ir~~r~~~~~--~~~p~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~-Gi~v~VId~~ 622 (721)
|++ .++|++||+|+..... ..++. +.+.+++||++++++|+|++||+||++++.|++|++.|+++ ||+++|||++
T Consensus 178 a~~-~~~Pv~i~~p~~l~r~~~~~~~~-~~~~~~~G~~~v~~~g~dv~iia~G~~~~~a~~Aa~~L~~~~Gi~v~vi~~~ 255 (342)
T 2bfd_B 178 CIE-DKNPCIFFEPKILYRAAAEEVPI-EPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKEKLGVSCEVIDLR 255 (342)
T ss_dssp HHH-SSSCEEEEEEGGGTTSCCEEEES-SCCCCCSSCCEEEECCSSEEEEECTTHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_pred HHh-cCCcEEEEecchhcCCCCCCCCC-cccceeCCceEEeccCCCEEEEEECHHHHHHHHHHHHHHhhcCCCEEEEeee
Confidence 987 5899999888543211 12232 23557889999999999999999999999999999999998 9999999999
Q ss_pred ccccccHHHHHHHhccCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHH
Q 004968 623 FCKPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHH 701 (721)
Q Consensus 623 ~l~PlD~e~i~~l~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~ 701 (721)
+++|||++.+++++++++++|+|||+. .||||++|++++.++++.....++.++|++|.|++++ +++++|+|+++
T Consensus 256 ~l~P~d~~~i~~~~~~~~~vv~vEe~~~~gg~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~----l~~~~gl~~~~ 331 (342)
T 2bfd_B 256 TIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPHI----FEPFYIPDKWK 331 (342)
T ss_dssp EEESCCHHHHHHHHHHHSCEEEEEEEESTTCHHHHHHHHHHHHHGGGCSSCCEEEEECSSCCCST----THHHHSCCHHH
T ss_pred ecCCCCHHHHHHHHhcCCEEEEEEeCccCCcHHHHHHHHHHhhCccccCCCeEEEecCCCCChHH----HHHHHCcCHHH
Confidence 999999999999998888999999996 8999999999998876522245789999999999876 89999999999
Q ss_pred HHHHHHHHhh
Q 004968 702 IAATALSLLG 711 (721)
Q Consensus 702 I~~~i~~~l~ 711 (721)
|+++|+++++
T Consensus 332 I~~~i~~~l~ 341 (342)
T 2bfd_B 332 CYDALRKMIN 341 (342)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 9999998864
|
| >1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-54 Score=467.63 Aligned_cols=301 Identities=21% Similarity=0.272 Sum_probs=267.9
Q ss_pred cccHHHHHHHHHHHHHHcCCCeEEEecCCCCcc----ChHHHHHhC-CCcEeeccccHHHHHHHHHHHHhCCCeeEEE-e
Q 004968 400 SRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDL----SLQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCI-I 473 (721)
Q Consensus 400 ~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~----~l~~f~~~f-p~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~-t 473 (721)
..+|+++|+++|.+++++|++|+++++|++... .++.|+++| |+||||+||+|++|+++|+|+|++|+|||++ +
T Consensus 4 ~~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~~~gisE~~~~~~a~G~A~~G~rp~~~~t 83 (338)
T 1qs0_B 4 TMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTAVGMGAYGLRPVVEIQ 83 (338)
T ss_dssp ECCHHHHHHHHHHHHHHHCTTEEEEETTCSSSCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEECS
T ss_pred cchHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEEccccHHHHHHHHHHHHhCCCEEEEEec
Confidence 358999999999999999999999999997422 368899999 9999999999999999999999999999998 6
Q ss_pred cHhhHHHHHHHHHHHhhcCC--------cceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 004968 474 PSAFLQRAYDQVVNDVDQQR--------LPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVAT 545 (721)
Q Consensus 474 ys~Fl~ra~dqi~~~~a~~~--------lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~ 545 (721)
|++|++|++|||+|++|+++ +||+++++++| |.||+|||+++|+++++++|||+|++|+|++|+++++++
T Consensus 84 ~~~F~~~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g--~~~G~th~s~~d~~~l~~iP~l~V~~Psd~~e~~~~l~~ 161 (338)
T 1qs0_B 84 FADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG--GIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIA 161 (338)
T ss_dssp CGGGCGGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC--SSSCCSSSSCCCHHHHTTSTTCEEECCCSHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC--CCCCcccccccHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 99999999999999998655 99999998887 679999999999999999999999999999999999999
Q ss_pred HHHhCCCCEEEEec----CCCcc---cc-----------cCCCCCCcceecCceEEEEeCCcEEEEEechhhHHHHHHHH
Q 004968 546 VASIDDRPVCFRYP----RGAIV---RT-----------DLPGYRGIPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARA 607 (721)
Q Consensus 546 a~~~~~~P~~ir~~----r~~~~---~~-----------~~p~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~ 607 (721)
|++ .++|++||+| |+... .. .++. ..+.+++||++++++|+|++||++|++++.|++|++
T Consensus 162 A~~-~~~Pv~i~~p~~l~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~gk~~~~~~g~dv~iva~G~~~~~a~~Aa~ 239 (338)
T 1qs0_B 162 SIE-CDDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPHSAVPD-GYYTVPLDKAAITRPGNDVSVLTYGTTVYVAQVAAE 239 (338)
T ss_dssp HHH-SSSCEEEEEEGGGSSSCCCSCSSSCCCCSTTSTTCEEES-SCCCCCTTCCCEEECCSSCEEEECTTHHHHHHHHHH
T ss_pred HHh-cCCcEEEEEchHhhcCcccccccCccchhhcccccccCC-CCcccccCceeEecCCCCEEEEEeCHHHHHHHHHHH
Confidence 987 4899999887 43221 00 1222 234567899999999999999999999999999999
Q ss_pred HHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCC
Q 004968 608 LLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHA 686 (721)
Q Consensus 608 ~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g 686 (721)
. +|++++|||+++++|||++.+++++++++.+|+|||+. .|||+++|++++.++++.....++.++|++|.|++++
T Consensus 240 ~---~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~gG~g~~V~~~l~~~~~~~l~~~v~~ig~~d~~~~~~ 316 (338)
T 1qs0_B 240 E---SGVDAEVIDLRSLWPLDLDTIVESVKKTGRCVVVHEATRTCGFGAELVSLVQEHCFHHLEAPIERVTGWDTPYPHA 316 (338)
T ss_dssp H---HCCCCEEEECSEEESCCHHHHHHHHHHHSCEEEEESSCSTTSTHHHHHHHHHHHSSSSCCSCCEEEECCSSCCCST
T ss_pred H---cCCCEEEEeecccCCCCHHHHHHHHhcCCEEEEEecCCcCCcHHHHHHHHHHHhcccccCCCeEEEecCCcCCcHH
Confidence 8 69999999999999999999999998888999999997 7999999999999887533346789999999999887
Q ss_pred CHHHHHHHcCCCHHHHHHHHHHHhh
Q 004968 687 SPTQQLALAGLTGHHIAATALSLLG 711 (721)
Q Consensus 687 ~~~~l~~~~gl~~~~I~~~i~~~l~ 711 (721)
+++++|+|+++|+++|+++++
T Consensus 317 ----l~~~~g~~~~~I~~~i~~~l~ 337 (338)
T 1qs0_B 317 ----QEWAYFPGPSRVGAALKKVME 337 (338)
T ss_dssp ----THHHHSCCHHHHHHHHHHSSC
T ss_pred ----HHHHHCCCHHHHHHHHHHHhc
Confidence 899999999999999998763
|
| >1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-28 Score=265.22 Aligned_cols=236 Identities=13% Similarity=0.080 Sum_probs=184.5
Q ss_pred cCCCCHHHHHH---HHHHHHHHHHHhHh-cCCCCCCCc---ccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHHhCch
Q 004968 91 LKSLTIKELKQ---LAVEIRSELSSIVS-KTEKSLKSS---LAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRR 163 (721)
Q Consensus 91 ~~~~~~~~l~~---la~eiR~~~~~~~~-~~~Gh~~ss---lg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~ 163 (721)
.++++.+++.+ .+.++|.+...+.. ..+||++++ .|+..++++++..++.++|+|++ +|+.|+|++++|+.
T Consensus 30 ~~~l~~~~l~~l~~~m~~~R~~~~~~~~~~~~G~~g~~~~~~G~ea~~~~~~~~l~~~rD~i~~--s~r~~~~~~~~G~~ 107 (367)
T 1umd_A 30 PLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRPGFDWVFP--YYRDHGLALALGIP 107 (367)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCCCCTTCHHHHHHHHHHSCTTTSEEEC--CTTTHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCCcCHHHHHHHHHHHcCCCCcEEEe--CcHHHHHHHHcCCC
Confidence 46788888777 58888999888887 457887644 67777888888889865699998 99999999999984
Q ss_pred --hhhHHHHhh------C-CCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHH
Q 004968 164 --SLIHTLRKK------D-GISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEA 234 (721)
Q Consensus 164 --~~~~~~r~~------g-gl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ea 234 (721)
+.|.++++. | +.++||...+ .+....+|++|+++|.|+|+|+|.++.+++++|||++|||++++|+++|+
T Consensus 108 ~~~~l~~~~g~~~g~~~G~~~~~h~~~~~-~~~~~~~g~lG~~l~~a~G~A~a~k~~~~~~~vv~i~GDGa~~~G~~~Ea 186 (367)
T 1umd_A 108 LKELLGQMLATKADPNKGRQMPEHPGSKA-LNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAG 186 (367)
T ss_dssp HHHHHHHHHTBTTCTTTTCSCSSCCCBTT-TTBCCCCSSTTTTHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCCCCCCCCCcccc-cCcCCCCchhhhhhhHHHHHHHHHHHhCCCCeEEEEEcccccccCcHHHH
Confidence 668888773 2 2445553211 22345789999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhh
Q 004968 235 MSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYAR 314 (721)
Q Consensus 235 ln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~ 314 (721)
||+|+.+++|+|+||+||++. + +.+...
T Consensus 187 l~~A~~~~lpvi~vv~NN~~g-i-------~~~~~~-------------------------------------------- 214 (367)
T 1umd_A 187 INFAAVQGAPAVFIAENNFYA-I-------SVDYRH-------------------------------------------- 214 (367)
T ss_dssp HHHHHHTTCSEEEEEEECSEE-T-------TEEHHH--------------------------------------------
T ss_pred HHHHHHhCcCEEEEEecCCee-e-------ccChhh--------------------------------------------
Confidence 999999999999999999962 2 111110
Q ss_pred cccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHh--cCCCCCEEEEEEEeccCCCccccccccccccc
Q 004968 315 GMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVAS--LGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQ 385 (721)
Q Consensus 315 ~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~--~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~H 385 (721)
..-.++...++++|||.++ .|||+|..++.++++++.+ ...++|++||++|.+++|+..++. +..|+
T Consensus 215 ~~~~~d~~~~a~a~G~~~~-~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIe~~t~r~~Ghs~~D~---~~~Yr 283 (367)
T 1umd_A 215 QTHSPTIADKAHAFGIPGY-LVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGPHSSADD---DSRYR 283 (367)
T ss_dssp HCSSSCSGGGGGGTTSCEE-EEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCCSCSSTTCC---GGGTS
T ss_pred ccCCCCHHHHHHHcCCcEE-EeCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeecCCCCCCCCC---ccccC
Confidence 0001234678999999998 7899999999887776653 125789999999999999987753 44444
|
| >1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-25 Score=241.54 Aligned_cols=228 Identities=18% Similarity=0.179 Sum_probs=170.9
Q ss_pred cccCCCCHHHHHHHHHHH---HHH---HHHhH--hcCCCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHHh
Q 004968 89 LRLKSLTIKELKQLAVEI---RSE---LSSIV--SKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILT 160 (721)
Q Consensus 89 ~~~~~~~~~~l~~la~ei---R~~---~~~~~--~~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~lt 160 (721)
....+++.+++.++.+.+ |.+ +.... ++. |+++++.|+-.+.+++...++ |+|.++. .||.++|.+..
T Consensus 36 ~~~~~l~~e~l~~~y~~M~~~R~fe~~~~~~~~qgr~-g~~~~~~G~Ea~~vg~~~~l~-~~D~v~~--~~R~~~~~~~~ 111 (368)
T 1w85_A 36 EAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRL-GFYAPTAGQEASQIASHFALE-KEDFILP--GYRDVPQIIWH 111 (368)
T ss_dssp GGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-CSCCCCTTCHHHHHHHHHTCC-TTCEEEC--CSSCHHHHHHT
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCcc-ccCCCCCCHHHHHHHHHHhcC-CcCEEEe--cchhHHHHHhc
Confidence 445678989888887755 533 21222 233 788999999888888888887 7899887 59999999999
Q ss_pred Cchhh--hHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHh
Q 004968 161 GRRSL--IHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNA 238 (721)
Q Consensus 161 Gr~~~--~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A 238 (721)
|.... |..+. |...|...+ ...+...+.|++|+++|+|+|+|+|.++++++++|||++|||++++|++||+||+|
T Consensus 112 G~~~~~~~~el~--G~~~G~~~h-~~~~~~~~~g~lG~~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Eal~~A 188 (368)
T 1w85_A 112 GLPLYQAFLFSR--GHFHGNQIP-EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFA 188 (368)
T ss_dssp TCCHHHHHHHHH--TCGGGGCCC-TTCCBCCCCCSTTHHHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHHHHH
T ss_pred CCCHHHHHHHHC--CCCCCCCCC-cccccCCCccccCccccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHHHHHH
Confidence 97432 22222 211121111 12233456799999999999999999999999999999999999999999999999
Q ss_pred hhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccC
Q 004968 239 GYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIG 318 (721)
Q Consensus 239 ~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 318 (721)
+.+++|+|+||+||++. + +.+... ..-.
T Consensus 189 ~~~~lpvi~vv~NN~~g-i-------~~~~~~--------------------------------------------~~~~ 216 (368)
T 1w85_A 189 GAFKAPAIFVVQNNRFA-I-------STPVEK--------------------------------------------QTVA 216 (368)
T ss_dssp HHTTCCEEEEEEECSEE-T-------TEEGGG--------------------------------------------TCSC
T ss_pred HHHCcCEEEEEEcCCcc-c-------eecccc--------------------------------------------ccCC
Confidence 99999999999999872 2 111110 0001
Q ss_pred CCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEEeccCCCc-ccc
Q 004968 319 PQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL--GSMGPVLVHVVTEENRRAE-DTQ 376 (721)
Q Consensus 319 ~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~--~~~~P~lI~v~T~kg~G~~-~ae 376 (721)
++...+++++||.++ .|||||++++.++++++++. ..++|++|+++|.+.+|+. .++
T Consensus 217 ~d~~~~a~a~G~~~~-~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~r~~gHs~~~D 276 (368)
T 1w85_A 217 KTLAQKAVAAGIPGI-QVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGPHTMSGD 276 (368)
T ss_dssp SCSGGGGGGTTCCEE-EEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCSSCSCSSCC
T ss_pred CCHHHHHHHCCCCEE-EEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCCCCCCC
Confidence 234668999999998 78999999999999888751 2478999999999999987 544
|
| >2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-25 Score=242.10 Aligned_cols=231 Identities=19% Similarity=0.161 Sum_probs=171.9
Q ss_pred CccccCCCCHHHHHHHHHHH---H-----HHHHHhHhcCCCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHHHHH
Q 004968 87 NPLRLKSLTIKELKQLAVEI---R-----SELSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKI 158 (721)
Q Consensus 87 ~p~~~~~~~~~~l~~la~ei---R-----~~~~~~~~~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ 158 (721)
.|.+..+++.++|.++.+.+ | ...++..++..|+++++.|+-.+.+++...++ |.|.|+. +||.++|.+
T Consensus 24 ~~~~~~~l~~e~l~~~yr~M~~~R~~e~~~~~l~~~g~i~gf~~~~~GqEa~~vg~~~al~-~~D~i~~--~yR~~~~~~ 100 (365)
T 2ozl_A 24 GPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGIN-PTDHLIT--AYRAHGFTF 100 (365)
T ss_dssp CSCSEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTSC-TTSEEEC--CSCCHHHHH
T ss_pred CccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHhhC-CCCEEeh--HHHHHHHHH
Confidence 35666678888888876665 3 23333334567999999999777788877777 7999998 799999999
Q ss_pred HhCchhhhHHHHhhC-CCCCCCCC-CCCCC----CCcC-cCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchH
Q 004968 159 LTGRRSLIHTLRKKD-GISGYTSR-SESEY----DPFN-AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQA 231 (721)
Q Consensus 159 ltGr~~~~~~~r~~g-gl~G~~~~-~es~~----d~~~-~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~ 231 (721)
+.|.... ..+.++. ...|+.+. ..+.| ++++ .|++|+++|+|+|+|+|.+++++++.|||++|||++++|++
T Consensus 101 ~~G~~~~-~i~~e~~g~~~g~~~g~gg~~H~~~~~~~~~~g~~G~~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~ 179 (365)
T 2ozl_A 101 TRGLSVR-EILAELTGRKGGCAKGKGGSMHMYAKNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQI 179 (365)
T ss_dssp HTTCCHH-HHHHHHTTCTTSTTTTSSCTTCCCBTTBCCCCCSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHH
T ss_pred hcCCCHH-HHHHHHcCCCCCCCCCCCCCCCcCccccCCCcchhhhhhHHHHHHHHHHHhcCCCceEEEEECchhhhccHH
Confidence 9997443 2234443 34454432 23333 2333 59999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHH
Q 004968 232 YEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDE 311 (721)
Q Consensus 232 ~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~ 311 (721)
||+||+|+.|++|+|+||+||++. + +.+....
T Consensus 180 ~Ealn~A~~~~lpvi~vv~NN~~g-~-------~t~~~~~---------------------------------------- 211 (365)
T 2ozl_A 180 FEAYNMAALWKLPCIFICENNRYG-M-------GTSVERA---------------------------------------- 211 (365)
T ss_dssp HHHHHHHHHTTCCEEEEEEECSEE-T-------TEEHHHH----------------------------------------
T ss_pred HHHHHHHHHHCcCEEEEEECCCcc-c-------CCCcccc----------------------------------------
Confidence 999999999999999999999872 2 1111100
Q ss_pred HhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEEeccCCCcccc
Q 004968 312 YARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL--GSMGPVLVHVVTEENRRAEDTQ 376 (721)
Q Consensus 312 ~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~--~~~~P~lI~v~T~kg~G~~~ae 376 (721)
...++... +++|+.++ .|||||++++.+++++|.+. +.++|+|||++|.+..|+..++
T Consensus 212 ----~~~~~~~~--ra~g~p~~-~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~R~~gHs~~D 271 (365)
T 2ozl_A 212 ----AASTDYYK--RGDFIPGL-RVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHEMSD 271 (365)
T ss_dssp ----CSCCCGGG--TTTTSCEE-EEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCSSCSSTTC
T ss_pred ----cCCCCHHH--HhCCCCEE-EEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCCCCCC
Confidence 00111122 56888887 68999999999998887541 2589999999999999987543
|
| >1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.8e-26 Score=249.65 Aligned_cols=284 Identities=13% Similarity=0.080 Sum_probs=103.7
Q ss_pred ccHHHHHHHHHHHHHHcCCCeEEEecCCCCccChHHHHH---hCCCcEeeccccHHHHHHHHHHHHhCCCeeEEEecHhh
Q 004968 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQE---KFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAF 477 (721)
Q Consensus 401 ~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~---~fp~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~tys~F 477 (721)
.+-.+|+++.+.+ .+.+++..-+-.+.+.-++.|.+ ++..+|+.+. +|++++++|.|+|++|.||++++.+++
T Consensus 23 ~~GneAva~~~~~---ag~~~v~~yPgtP~t~i~~~l~~~~~~~g~~~i~~e-~E~~a~~~a~Gaa~aG~r~~~~ts~~G 98 (395)
T 1yd7_A 23 IQGDEAIARAAIL---AGCRFYAGYPITPASEIFEAMALYMPLVDGVVIQME-DEIASIAAAIGASWAGAKAMTATSGPG 98 (395)
T ss_dssp EEHHHHHHHHHHH---HTCCEEEECCBTTTBCHHHHHHHHGGGGTCEEEECS-CHHHHHHHHHHHHHTTCCEEEEEETTH
T ss_pred eEHHHHHHHHHHH---cCCCEEEEEECcchHHHHHHHHHhhhhcCcEEEEeC-CHHHHHHHHHHHHHhCCcEEEEeCchH
Confidence 3456777777654 35667766655543322344544 5567899987 999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCcceEEEEcCCCCcC--CCCCCcC-cHHHHHHHccCC--CcEEEeeCCHHHHHHHHHHHHH---h
Q 004968 478 LQRAYDQVVNDVDQQRLPVRFVITSAGLVG--SDGPTQC-GAFDITFMSCLP--NMIVMAPSDEDELVDMVATVAS---I 549 (721)
Q Consensus 478 l~ra~dqi~~~~a~~~lpVv~v~~~~G~~G--~dG~TH~-~~~dia~~~~iP--nl~V~~Psd~~E~~~~l~~a~~---~ 549 (721)
+.+++|||.+ ++..++|++++...++..+ ....++| ...+. ++...| ++.|++|+|++|+.+++..|++ .
T Consensus 99 ~~~~~d~l~~-aa~~~~P~Vi~~~~~~~~~~g~~~~~~~sd~~~~-~~~~~g~~g~~vl~p~~~qea~~l~~~A~~lA~~ 176 (395)
T 1yd7_A 99 FSLMQENIGY-AVMTETPVVIVDVQRSGPSTGQPTLPAQGDIMQA-IWGTHGDHSLIVLSPSTVQEAFDFTIRAFNLSEK 176 (395)
T ss_dssp HHHHTTTCC-----CCCCEEEEEEC---------------------------CCCCEEECCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHhcCCCEEEEEeeCCCCCCCCCcccchhHHHHH-HhccCCCcceEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 9999999965 5688999999875544322 1222333 44443 445555 9999999999999999999985 3
Q ss_pred CCCCEEEEecCCCc---ccccCCCC------------------CCcce--ec--------Cc------------------
Q 004968 550 DDRPVCFRYPRGAI---VRTDLPGY------------------RGIPI--EI--------GK------------------ 580 (721)
Q Consensus 550 ~~~P~~ir~~r~~~---~~~~~p~~------------------~~~~~--~~--------gk------------------ 580 (721)
.+.||+++++.... ...++|+. ..+.. +. +.
T Consensus 177 ~~~PVi~~~~~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~~~h~e~g~~~ 256 (395)
T 1yd7_A 177 YRTPVILLTDAEVGHMRERVYIPNPDEIEIINRKLPRNEEEAKLPFGDPHGDGVPPMPIFGKGYRTYVTGLTHDEKGRPR 256 (395)
T ss_dssp HTSEEEEEECHHHHHCEEEEEECCGGGSCCCCCC----------------------------------------------
T ss_pred HCCCEEEEcchhHhCeeceecCCChHHhhhhcccccCCCcccccCcccCCCCCCCCCccCCCCceeEecccccccccCcc
Confidence 46899999874210 00011100 00111 00 00
Q ss_pred ----------------------------eEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHH
Q 004968 581 ----------------------------GKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLV 632 (721)
Q Consensus 581 ----------------------------~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i 632 (721)
-++.++|+|++||+||+++..+++|++.|+++|++++|||++++||||.+.|
T Consensus 257 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~g~dv~iva~G~~~~~~~eA~~~L~~~Gi~v~vi~~r~~~Pld~~~i 336 (395)
T 1yd7_A 257 TVDREVHERLIKRIVEKIEKNKKDIFTYETYELEDAEIGVVATGIVARSALRAVKMLREEGIKAGLLKIETIWPFDFELI 336 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhhcCccEEecCCCCCEEEEEECccHHHHHHHHHHHHHcCCceEEEEeCeecCCCHHHH
Confidence 0123467899999999999999999999999999999999999999999999
Q ss_pred HHHhccCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHh
Q 004968 633 RELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLL 710 (721)
Q Consensus 633 ~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l 710 (721)
.++++++++|+|||++. |||++.|.+.+... .++..++-.+ | .-+++++|.+.+++++
T Consensus 337 ~~~~~~~~~vvvvEe~~-G~l~~~v~~~~~~~------~~~~~~gk~~-----g--------~~~~~~ei~~~i~~~~ 394 (395)
T 1yd7_A 337 ERIAERVDKLYVPEMNL-GQLYHLIKEGANGK------AEVKLISKIG-----G--------EVHTPMEIFEFIRREF 394 (395)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred HHHHhcCCEEEEEeCCc-hHHHHHHHHHhcCC------CCeEEEeccC-----C--------CcCCHHHHHHHHHHhh
Confidence 99999999999999998 99999998876542 1222333222 1 2268899998887754
|
| >2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=3.5e-23 Score=227.74 Aligned_cols=233 Identities=12% Similarity=0.097 Sum_probs=161.1
Q ss_pred CccccCCCCHHHHHHHHHHH---HHHHHHhHh--cC--CCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHH
Q 004968 87 NPLRLKSLTIKELKQLAVEI---RSELSSIVS--KT--EKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKIL 159 (721)
Q Consensus 87 ~p~~~~~~~~~~l~~la~ei---R~~~~~~~~--~~--~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~l 159 (721)
.|....+++.+++.++.+.+ |.+-..... .. -++.+++.|+-.+.+++-..+ .++|+|+. .|+.+++.+.
T Consensus 45 ~~~~~~~~~~e~~~~~y~~M~~~r~fe~~~~~~~~~gri~~~~~~~GqEa~~vg~~~al-~~~D~v~~--~yR~~~~~~~ 121 (400)
T 2bfd_A 45 NPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAAL-DNTDLVFG--QAREAGVLMY 121 (400)
T ss_dssp CGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTCHHHHHHHHHTS-CTTSEEEC--CSCCHHHHHH
T ss_pred CccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeecCCChHHHHHHHHHhc-CCCCEEEe--cCcCHHHHHH
Confidence 34445678888877775544 322111111 11 135678888854554444444 47899987 8999999999
Q ss_pred hCc--hhhhHHHHhh------C-CCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccch
Q 004968 160 TGR--RSLIHTLRKK------D-GISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQ 230 (721)
Q Consensus 160 tGr--~~~~~~~r~~------g-gl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~ 230 (721)
.|. .+.|..++.. | +.++|+...+ .+...++|++|+++|+|+|+|+|.++++++++|||++|||++++|+
T Consensus 122 ~G~~~~~~l~e~~g~~~g~~~G~~~~~H~~~~~-~~~~~~~g~lG~~lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~ 200 (400)
T 2bfd_A 122 RDYPLELFMAQCYGNISDLGKGRQMPVHYGCKE-RHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGD 200 (400)
T ss_dssp TTCCHHHHHHHHHTCTTCTTTTCSCSSCCCBTT-TTBCCCCSSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHH
T ss_pred cCCCHHHHHHHhcCCCCCCCCCCCCCcCCcccc-cCccccCccccccccHHHHHHHhhhhhCCCCeEEEEECchhhhcCh
Confidence 997 3335555542 1 1223332111 1123457999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHH
Q 004968 231 AYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVD 310 (721)
Q Consensus 231 ~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~ 310 (721)
+||+||+|+.+++|+|+||+||++. +.+ +...
T Consensus 201 ~~Eal~~A~~~~lpvi~vv~NN~~~-i~~-------~~~~---------------------------------------- 232 (400)
T 2bfd_A 201 AHAGFNFAATLECPIIFFCRNNGYA-IST-------PTSE---------------------------------------- 232 (400)
T ss_dssp HHHHHHHHHHTTCCEEEEEEECSEE-TTE-------EGGG----------------------------------------
T ss_pred HHHHHHHHHHHCcCEEEEEECCcee-eee-------cccc----------------------------------------
Confidence 9999999999999999999999873 211 1110
Q ss_pred HHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEEeccCCCcccc
Q 004968 311 EYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL--GSMGPVLVHVVTEENRRAEDTQ 376 (721)
Q Consensus 311 ~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~--~~~~P~lI~v~T~kg~G~~~ae 376 (721)
..-.++...+++++||.++ .|||||++++.++++++++. ..++|++|+++|.+-.|..+.+
T Consensus 233 ----~~~~~d~~~~a~a~G~~~~-~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~~tyR~~gHs~~D 295 (400)
T 2bfd_A 233 ----QYRGDGIAARGPGYGIMSI-RVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSD 295 (400)
T ss_dssp ----TCSSSTTGGGTGGGTCEEE-EEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECCCCC--CC--
T ss_pred ----cCCCCCHHHHHHHcCCcEE-EEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeeeeCCCCCCC
Confidence 0001223568899999998 88999999999999877641 1378999999998766665543
|
| >1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A | Back alignment and structure |
|---|
Probab=99.89 E-value=9.2e-23 Score=224.44 Aligned_cols=231 Identities=14% Similarity=0.089 Sum_probs=160.8
Q ss_pred cCCCCHHHHHHHHHHH---HHH---HHHhHh-cCCCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHHhCch
Q 004968 91 LKSLTIKELKQLAVEI---RSE---LSSIVS-KTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRR 163 (721)
Q Consensus 91 ~~~~~~~~l~~la~ei---R~~---~~~~~~-~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~ 163 (721)
..+++.+++.++.+.+ |.+ +..... +.-++.+++.|+-.+.+++-..+ .++|+++. .|+.+++.+..|..
T Consensus 68 ~~~~~~e~~~~~y~~M~~~R~fe~~~~~~~~qgr~~~~~~~~GqEA~~vg~~~al-~~~D~v~~--~yR~~~~~l~~g~~ 144 (407)
T 1qs0_A 68 AEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKMSFYMQSLGEEAIGSGQALAL-NRTDMCFP--TYRQQSILMARDVS 144 (407)
T ss_dssp GSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTTHHHHHHHHHHS-CTTSEEEC--CSSCHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCcCCCChHHHHHHHHHhc-CCCCEEEe--cccchHHHHhcCCC
Confidence 3567888877765543 322 211111 11246678899854444444444 48999985 89998888887752
Q ss_pred hhhHHHHhh-CCCCCCCCC-CCCCC------CCc-CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHH
Q 004968 164 SLIHTLRKK-DGISGYTSR-SESEY------DPF-NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEA 234 (721)
Q Consensus 164 ~~~~~~r~~-ggl~G~~~~-~es~~------d~~-~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ea 234 (721)
.. ..+.++ |...+..++ ..+.| .++ ++|++|+++|+|+|+|+|.++++++++|||++|||++++|.+||+
T Consensus 145 ~~-~i~~el~g~~~~~~~G~g~~~h~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~vv~i~GDGa~~~G~~~Ea 223 (407)
T 1qs0_A 145 LV-EMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTA 223 (407)
T ss_dssp HH-HHHHHHHTCTTCTTTTCSCTTCCCBGGGTBCCCCSSSSHHHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHH
T ss_pred HH-HHHHHHhCCCCCCCCCCCceeecchhccCccccccccccchhHHHHHHHHHHHhCCCCEEEEEECCchhhcChHHHH
Confidence 21 122222 222222221 11211 333 479999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhh
Q 004968 235 MSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYAR 314 (721)
Q Consensus 235 ln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~ 314 (721)
||+|+.|++|+|+||+||++. + +.+.... . +
T Consensus 224 l~~A~~~~lpvi~Vv~NN~~g-i-------~~~~~~~-------~-------------------~--------------- 254 (407)
T 1qs0_A 224 LTFAHVYRAPVILNVVNNQWA-I-------STFQAIA-------G-------------------G--------------- 254 (407)
T ss_dssp HHHHHHHTCCEEEEEEECSEE-T-------TEEGGGG-------T-------------------T---------------
T ss_pred HHHHHHHCcCEEEEEECCCcc-e-------eeccccc-------c-------------------C---------------
Confidence 999999999999999999873 2 1111100 0 0
Q ss_pred cccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEEeccCCCccccc
Q 004968 315 GMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL--GSMGPVLVHVVTEENRRAEDTQK 377 (721)
Q Consensus 315 ~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~--~~~~P~lI~v~T~kg~G~~~ae~ 377 (721)
-.++...++++|||.++ .|||+|++++.++++++.+. ..++|++|+++|.|++|+..++.
T Consensus 255 --~~~d~a~~a~a~G~~~~-~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~Ghs~~Dd 316 (407)
T 1qs0_A 255 --ESTTFAGRGVGCGIASL-RVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDD 316 (407)
T ss_dssp --TTCCSTHHHHHTTCEEE-EEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCCSCSSTTCC
T ss_pred --CCCCHHHHHHHcCCeEE-EEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCcCCCCC
Confidence 01223457889999998 78999999999998887642 24789999999999999988863
|
| >2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-17 Score=204.57 Aligned_cols=253 Identities=12% Similarity=0.082 Sum_probs=181.7
Q ss_pred cEeeccccHHHHHHHHHHHHhCCCeeEEEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHHHc
Q 004968 444 RYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMS 523 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~G~~p~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~ 523 (721)
++++...+|.++++++.|+|++|.|++++|.+..+..+.+.+. .++..++|+|++...+++.+..-.++.+..|. ++.
T Consensus 55 ~~v~~~esE~aA~~aaiGAa~aGaR~~t~Ts~~Gl~lm~e~l~-~~ag~~~P~Vi~va~R~g~~~glsi~~~hsd~-~~a 132 (1231)
T 2c42_A 55 LTIREMQSEAGAAGAVHGALAAGALTTTFTASQGLLLMIPNMY-KISGELLPGVFHVTARAIAAHALSIFGDHQDI-YAA 132 (1231)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTCCEEEEECHHHHHHHHHHHH-HHHHTTCCCEEEEEECCCCSSSBCCSCCSHHH-HTT
T ss_pred eEEEecCChHHHHHHHHHHHHcCChHhhhccHHHHHHHHHHHH-HHhCCCCCEEEEECCCCccCCCCcCCCchhhH-HHH
Confidence 7999999999999999999999999999999999888889874 45667999998885443322212445555564 456
Q ss_pred cCCCcEEEeeCCHHHHHHHHHHHHHh---CCCCEEEEecCCCc----ccccCCCC---------------------CCcc
Q 004968 524 CLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYPRGAI----VRTDLPGY---------------------RGIP 575 (721)
Q Consensus 524 ~iPnl~V~~Psd~~E~~~~l~~a~~~---~~~P~~ir~~r~~~----~~~~~p~~---------------------~~~~ 575 (721)
..+|+.|++|+|++|+++++..|++. ...||+++++.... ...++|+. ...+
T Consensus 133 r~~G~~vl~pss~QEa~dl~~~Af~lAek~~~PVi~~~Dg~~~sh~~~~vev~~~~~~~~~~~~~~~~~~~~~~~~p~~p 212 (1231)
T 2c42_A 133 RQTGFAMLASSSVQEAHDMALVAHLAAIESNVPFMHFFDGFRTSHEIQKIEVLDYADMASLVNQKALAEFRAKSMNPEHP 212 (1231)
T ss_dssp TTSSCEEEECCSHHHHHHHHHHHHHHHHHHCCCEEEEEETTTTTTCEEEEECCCHHHHHHTSCHHHHHHHHHHSCCTTSC
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHHHHHHcCCCEEEEecCcccccceeeeecCCHHHHHhhcChhhhhhccccccCCCCc
Confidence 68999999999999999999998653 46799999876321 11122210 0001
Q ss_pred eecCc------------------------------------------eE-EEEeCCcEEEEEechhhHHHHHHHHHHHhC
Q 004968 576 IEIGK------------------------------------------GK-VLVEGKDVALLGYGAMVQNCLKARALLSKL 612 (721)
Q Consensus 576 ~~~gk------------------------------------------~~-vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~ 612 (721)
...|. .. .-.+++|++||+||+++..+++|++.|+++
T Consensus 213 ~~~g~a~~~~~~~~~~e~~~~~~~~~~~~v~~~~~k~~~~~g~~y~~~e~~g~~dAd~vIVa~Gs~~~~~~eAv~~L~~~ 292 (1231)
T 2c42_A 213 HVRGTAQNPDIYFQGREAANPYYLKVPGIVAEYMQKVASLTGRSYKLFDYVGAPDAERVIVSMGSSCETIEEVINHLAAK 292 (1231)
T ss_dssp CEESCBCCTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHSCCCCSEEEEECTTCSEEEEECSTHHHHHHHHHHHHHTT
T ss_pred eecCCCcCcchhhhhHhhhhhhhHhhHHHHHHHHHHHHHHhcccccceeeecCCCCCEEEEEeCHHHHHHHHHHHHHHhc
Confidence 11111 11 224678999999999999999999999999
Q ss_pred CCCeEEeecCccccccHHHHHHHh-ccCCeEEEEcCCCCC-----ChHHHHHHHHHhcCCCCCCCceEEEecCCccccCC
Q 004968 613 GIDVTVADARFCKPLDIKLVRELC-QNHTFLITVEEGSIG-----GFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHA 686 (721)
Q Consensus 613 Gi~v~VId~~~l~PlD~e~i~~l~-~~~~~vvvvEe~~~g-----G~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g 686 (721)
|++|+||++|+++|||.+.|.+++ ++.++|+|+|++..+ .+...|...+.... ...++...| +|+-.|
T Consensus 293 G~kvgvl~lr~~rPfp~~~i~~~l~~~~k~i~VvE~~~~~g~~G~pl~~dv~~al~~~~---~~~~~~~~g---r~gl~g 366 (1231)
T 2c42_A 293 GEKIGLIKVRLYRPFVSEAFFAALPASAKVITVLDRTKEPGAPGDPLYLDVCSAFVERG---EAMPKILAG---RYGLGS 366 (1231)
T ss_dssp TCCEEEEEESEEESCCHHHHHHTSCTTCCEEEEEESSCCTTCSSCHHHHHHHHHHHHHC---SCCCEEEEE---ECCGGG
T ss_pred CCceEEEEEEEeCCCCHHHHHHHHHhcCCEEEEEECCCCCCCCcccHHHHHHHHHhhcc---CCCCeEEEE---EECCCC
Confidence 999999999999999999999987 777999999998532 25556665554321 011222222 222111
Q ss_pred CHHHHHHHcCCCHHHHHHHHHHHhhc
Q 004968 687 SPTQQLALAGLTGHHIAATALSLLGR 712 (721)
Q Consensus 687 ~~~~l~~~~gl~~~~I~~~i~~~l~~ 712 (721)
.-++++.|.+.+.++.+.
T Consensus 367 --------~~~tp~~i~~~~~~l~~~ 384 (1231)
T 2c42_A 367 --------KEFSPAMVKSVYDNMSGA 384 (1231)
T ss_dssp --------CCCCHHHHHHHHHHHHTT
T ss_pred --------CCCCHHHHHHHHHHhhcC
Confidence 127889999988877543
|
| >4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=6.5e-16 Score=179.31 Aligned_cols=189 Identities=13% Similarity=0.112 Sum_probs=125.4
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+...|...+ .+++.|++|+| |+.|+++++..+.. +++. ...+.|++|+++|+|+|
T Consensus 371 l~~~~~~~~l~~~l-~~~~ivv~d~G~~~~~~~~~~~~~~~-----~~~~-------------~~~~~g~~G~~l~~A~G 431 (603)
T 4feg_A 371 LQAYQVLRAVNKIA-EPDAIYSIDVGDINLNANRHLKLTPS-----NRHI-------------TSNLFATMGVGIPGAIA 431 (603)
T ss_dssp CCHHHHHHHHHHHC-CTTCEEEECSSHHHHHHHHHCCCCTT-----CEEE-------------CCCSSCCTTCHHHHHHH
T ss_pred cCHHHHHHHHHHhC-CCCCEEEECCchHHHHHHHhceeCCC-----Ccee-------------cCcccccccchhHHHhh
Confidence 33334444444433 47888999999 88888866543221 1111 11245899999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+++|. ++++|||++|||+++ |.+|+|++|+++++|+++||.||+.. +.+.. .+
T Consensus 432 aala~----~~~~vv~~~GDG~~~--~~~~~l~~a~~~~lp~~~vv~nN~~~-------------~~~~~-~~------- 484 (603)
T 4feg_A 432 AKLNY----PERQVFNLAGDGGAS--MTMQDLATQVQYHLPVINVVFTNCQY-------------GFIKD-EQ------- 484 (603)
T ss_dssp HHHHC----TTSCEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEECSBC-------------HHHHH-HH-------
T ss_pred HHHhC----CCCcEEEEeccHHHh--hhHHHHHHHHHHCcCeEEEEEECCch-------------HHHHH-HH-------
Confidence 99984 488999999999996 66899999999999999888888742 21100 00
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHH--hcCCCCCEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVA--SLGSMGPVL 361 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~--~~~~~~P~l 361 (721)
+. ... .+..+.+ +-.++...++++||+.++.+ ++.++|.+++++++ + .++|++
T Consensus 485 --~~--~~~--~~~~~~~--------------~~~~d~~~~a~a~G~~~~~v---~~~~~l~~al~~a~~~~--~~gP~l 539 (603)
T 4feg_A 485 --ED--TNQ--NDFIGVE--------------FNDIDFSKIADGVHMQAFRV---NKIEQLPDVFEQAKAIA--QHEPVL 539 (603)
T ss_dssp --HH--HCS--SCCCSSB--------------CCCCCHHHHHHHTTCEEEEE---CBGGGHHHHHHHHHHHT--TTSCEE
T ss_pred --HH--hcC--CCcccCc--------------CCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHHhc--CCCcEE
Confidence 00 000 0000000 01133456889999999865 57889999999998 6 589999
Q ss_pred EEEEEeccCCCccccccccccccccc
Q 004968 362 VHVVTEENRRAEDTQKSEAIEKQQEG 387 (721)
Q Consensus 362 I~v~T~kg~G~~~ae~~~~~~~~Hg~ 387 (721)
||+.|.+++.+++.. ..+..|+.
T Consensus 540 Iev~~~~~~~~~~~~---~~~~~~~~ 562 (603)
T 4feg_A 540 IDAVITGDRPLPAEK---LRLDSAMS 562 (603)
T ss_dssp EEEECCCCCCCCTTS---CCCCTTTS
T ss_pred EEEEeCCCCCCCccc---chhhhhhh
Confidence 999997766665433 24555554
|
| >3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.4e-15 Score=137.62 Aligned_cols=106 Identities=16% Similarity=0.295 Sum_probs=87.5
Q ss_pred eCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEcCCCCCChHHHHHHHHHhcC
Q 004968 586 EGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALDG 665 (721)
Q Consensus 586 eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~ 665 (721)
+|+|++||+||+++..|++|++.|+++|++++|++++++||||.+.+.+++++++.|+|+|++..|||++.|...+..
T Consensus 12 ~g~dv~iv~~Gs~~~~a~eA~~~L~~~Gi~v~vi~~r~~~P~d~~~l~~~~~~~~~vvvvE~~~~G~l~~~i~~~~~~-- 89 (118)
T 3ju3_A 12 KEADITFVTWGSQKGPILDVIEDLKEEGISANLLYLKMFSPFPTEFVKNVLSSANLVIDVESNYTAQAAQMIKLYTGI-- 89 (118)
T ss_dssp SSCSEEEEEEGGGHHHHHHHHHHHHHTTCCEEEEEECSSCSCCHHHHHHHHTTCSCCCCCCCCCCCCHHHHHHHHHCC--
T ss_pred CCCCEEEEEECccHHHHHHHHHHHHHCCCceEEEEECeEecCCHHHHHHHHcCCCEEEEEECCCCCcHHHHHHHHcCC--
Confidence 678999999999999999999999999999999999999999999999999999999999999889999998765421
Q ss_pred CCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhh
Q 004968 666 LLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 711 (721)
Q Consensus 666 ~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 711 (721)
. ++..+. .+ .| .-+++++|.+.++++++
T Consensus 90 ----~-~~~~i~---~~--~G--------~~~~~~ei~~~i~~~~~ 117 (118)
T 3ju3_A 90 ----D-IKNKIL---KY--NG--------RHMTEDEILKSAKEILN 117 (118)
T ss_dssp ----C-CCCCCC---CB--TT--------BCCCHHHHHHHHHHHHH
T ss_pred ----C-ceeEEe---ee--CC--------eeCCHHHHHHHHHHHhh
Confidence 0 011110 01 12 13799999999999874
|
| >2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.4e-14 Score=164.82 Aligned_cols=178 Identities=11% Similarity=0.088 Sum_probs=121.9
Q ss_pred cccHHHHHHHHhcccCCCCcEEEecCCc-hHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHH
Q 004968 124 SLAAVELTVALHHVFHAPVDKILWDVGE-QTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGL 202 (721)
Q Consensus 124 slg~vel~~aL~~vf~~p~D~iv~d~GH-~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~ 202 (721)
.+....+..+|...+. +++.+++|+|+ +.|++..+..+.. .+.+...+.|++|+++|+|+
T Consensus 369 ~~~~~~~~~~l~~~l~-~~~iv~~d~G~~~~~~~~~~~~~~~------------------~~~~~~~g~g~~G~~l~~Ai 429 (563)
T 2uz1_A 369 ALHPFHASQVIAKHVD-AGVTVVADGALTYLWLSEVMSRVKP------------------GGFLCHGYLGSMGVGFGTAL 429 (563)
T ss_dssp SCCHHHHHHHHHTTCS-TTEEEEECSSHHHHHHHHHHTTSCC------------------SEEECCCTTCCTTTHHHHHH
T ss_pred CcCHHHHHHHHHHhCC-CCcEEEEcCchHHHHHHHhccccCC------------------CeEECCCCCccccChHHHHH
Confidence 3555566666766654 67788899995 6678866543210 11122246799999999999
Q ss_pred HHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhch
Q 004968 203 GMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSK 282 (721)
Q Consensus 203 G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~ 282 (721)
|+|+|.+ +++++|||++|||+++ |.+++|++|+++++|+++||.||+.. +.. +.+++..
T Consensus 430 Gaa~a~~--~~~~~vv~i~GDG~~~--~~~~~L~ta~~~~l~~~ivv~nN~~~-------------~~~-~~~~~~~--- 488 (563)
T 2uz1_A 430 GAQVADL--EAGRRTILVTGDGSVG--YSIGEFDTLVRKQLPLIVIIMNNQSW-------------GAT-LHFQQLA--- 488 (563)
T ss_dssp HHHHHHH--HHTCEEEEEEEHHHHG--GGTTHHHHHHHHTCCCEEEEEECSBC-------------HHH-HHHHHHH---
T ss_pred HHHHHhh--CCCCeEEEEEccHHHh--CCHHHHHHHHHhCCCeEEEEEeCCcc-------------hHH-HHHHHHh---
Confidence 9999985 5689999999999997 56789999999999987777777531 211 1111000
Q ss_pred HHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEE
Q 004968 283 SFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLV 362 (721)
Q Consensus 283 ~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI 362 (721)
+.-....+.+ +-.++...++++||+.++.+ ++.++|.++++++++ .++|++|
T Consensus 489 ---------~~~~~~~~~~--------------~~~~d~~~~a~a~G~~~~~v---~~~~~l~~al~~a~~--~~gp~li 540 (563)
T 2uz1_A 489 ---------VGPNRVTGTR--------------LENGSYHGVAAAFGADGYHV---DSVESFSAALAQALA--HNRPACI 540 (563)
T ss_dssp ---------TCTTCCCSCB--------------CCCCCHHHHHHHTTCEEEEE---CSHHHHHHHHHHHHH--SSSCEEE
T ss_pred ---------cCCCcccCCc--------------CCCCCHHHHHHHcCCeEEEe---CCHHHHHHHHHHHHH--CCCCEEE
Confidence 0000000110 01134466889999999866 689999999999987 5899999
Q ss_pred EEEEecc
Q 004968 363 HVVTEEN 369 (721)
Q Consensus 363 ~v~T~kg 369 (721)
|+.|.+.
T Consensus 541 ev~~~~~ 547 (563)
T 2uz1_A 541 NVAVALD 547 (563)
T ss_dssp EEECCSC
T ss_pred EEEeccc
Confidence 9999853
|
| >3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=7e-15 Score=168.78 Aligned_cols=176 Identities=18% Similarity=0.213 Sum_probs=113.5
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+...|...+ .+++.|++|+| |+.|....+. +...+++ +...+.|++|+++|+|+|
T Consensus 357 ~~~~~~~~~l~~~l-~~~~ivv~d~G~~~~~~~~~~~-----~~~~~~~-------------~~~~~~g~mG~~l~~AiG 417 (549)
T 3eya_A 357 IHPQYLAQQISHFA-ADDAIFTCDVGTPTVWAARYLK-----MNGKRRL-------------LGSFNHGSMANAMPQALG 417 (549)
T ss_dssp BCHHHHHHHHHHHS-CTTCEEEECTTHHHHHHHHHCC-----CCSSCEE-------------ECCTTTCCTTCHHHHHHH
T ss_pred cCHHHHHHHHHhhC-CCCCEEEEcCcHHHHHHHHhCc-----cCCCCcE-------------EeCCCCchhhhHHHHHHH
Confidence 44444444454443 36788889999 4444432211 1001111 111255899999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+|+|. ++++|||++|||+++ |.+++|++|+++++|+++||.||+..++-+.. +....
T Consensus 418 aala~----~~~~vv~i~GDGs~~--~~~~~L~ta~~~~l~~~ivv~nN~~~g~~~~~-----------------~~~~~ 474 (549)
T 3eya_A 418 AQATE----PERQVVAMCGDGGFS--MLMGDFLSVVQMKLPVKIVVFNNSVLGFVAME-----------------MKAGG 474 (549)
T ss_dssp HHHHS----TTSCEEEEEEHHHHH--HTGGGHHHHHHTTCCCEEEEEECSBCCCC-------------------------
T ss_pred HHHhC----CCCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCccHHHHHH-----------------HHhcC
Confidence 99985 488999999999996 77899999999999977776666532110000 00000
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVH 363 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~ 363 (721)
+ ......+-.++...++++||+.+..+ ++.++|.++|+++++ .++|++||
T Consensus 475 ~-------------------------~~~~~~~~~~d~~~~a~a~G~~~~~v---~~~~~l~~al~~a~~--~~gp~lie 524 (549)
T 3eya_A 475 Y-------------------------LTDGTELHDTNFARIAEACGITGIRV---EKASEVDEALQRAFS--IDGPVLVD 524 (549)
T ss_dssp -----------------------------CCBCCCCCHHHHHHHTTSEEEEE---CSGGGHHHHHHHHHH--SSSCEEEE
T ss_pred C-------------------------CCcCCcCCCCCHHHHHHHcCCcEEEe---CCHHHHHHHHHHHHh--CCCCEEEE
Confidence 0 00001111234566889999999866 788999999999988 58999999
Q ss_pred EEEeccCCC
Q 004968 364 VVTEENRRA 372 (721)
Q Consensus 364 v~T~kg~G~ 372 (721)
|.|.+....
T Consensus 525 v~~~~~~~~ 533 (549)
T 3eya_A 525 VVVAKEELA 533 (549)
T ss_dssp EEBCCCCSC
T ss_pred EEecccccc
Confidence 999876543
|
| >1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=4.2e-14 Score=162.92 Aligned_cols=175 Identities=14% Similarity=0.132 Sum_probs=119.4
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+..+|...+. +++.|+.|+| |+.|.+.++..+.. .+.+...+.|++|+++|+|+|
T Consensus 371 l~~~~v~~~l~~~l~-~~~iv~~d~G~~~~~~~~~~~~~~~------------------~~~~~~~g~g~mG~~l~~AiG 431 (566)
T 1ozh_A 371 LHPLRIVRAMQDIVN-SDVTLTVDMGSFHIWIARYLYTFRA------------------RQVMISNGQQTMGVALPWAIG 431 (566)
T ss_dssp BCHHHHHHHHHHHCC-TTEEEEECSSHHHHHHHHTGGGCCC------------------SEEECCCTTCCTTCHHHHHHH
T ss_pred cCHHHHHHHHHHhCC-CCCEEEEcCcHHHHHHHHhcccCCC------------------CeEEeCCCcccccchHHHHHH
Confidence 555556666655553 5677889999 66676644321110 011112367999999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+|+|. ++++|||++|||+++ |.+++|++|+++++|+++||.||+.. |.. +.+++....+
T Consensus 432 aala~----~~~~vv~i~GDG~~~--~~~~~L~ta~~~~l~~~ivv~nN~~~-------------~~~-~~~~~~~~~~- 490 (566)
T 1ozh_A 432 AWLVN----PERKVVSVSGDGGFL--QSSMELETAVRLKANVLHLIWVDNGY-------------NMV-AIQEEKKYQR- 490 (566)
T ss_dssp HHHHS----TTSEEEEEEEHHHHH--HHTTHHHHHHHHTCCEEEEEEECSBC-------------HHH-HHHHHHHHSS-
T ss_pred HHHhC----CCCCEEEEEcChHHh--ccHHHHHHHHHhCCCcEEEEEECCch-------------hHH-HHHHHHhcCC-
Confidence 99995 489999999999996 67899999999999988888777641 211 1111100000
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVH 363 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~ 363 (721)
..+ ...-.++...++++||+.++.+ ++.++|.++++++.+ .++|++||
T Consensus 491 -------------~~~--------------~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~~a~~--~~gp~lie 538 (566)
T 1ozh_A 491 -------------LSG--------------VEFGPMDFKAYAESFGAKGFAV---ESAEALEPTLRAAMD--VDGPAVVA 538 (566)
T ss_dssp -------------CCS--------------CBCCCCCHHHHHHTTTSEEEEC---CSGGGHHHHHHHHHH--SSSCEEEE
T ss_pred -------------Ccc--------------CcCCCCCHHHHHHHcCCeEEEe---CCHHHHHHHHHHHHh--CCCCEEEE
Confidence 000 0111234466889999999854 578999999999987 58999999
Q ss_pred EEEeccCC
Q 004968 364 VVTEENRR 371 (721)
Q Consensus 364 v~T~kg~G 371 (721)
+.|.++..
T Consensus 539 v~~~~~~~ 546 (566)
T 1ozh_A 539 IPVDYRDN 546 (566)
T ss_dssp EEBCCTTH
T ss_pred EEeCCCcC
Confidence 99988654
|
| >1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.9e-14 Score=166.68 Aligned_cols=141 Identities=15% Similarity=0.172 Sum_probs=96.9
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|++|+++|+|+|+|+|. ++++|||++|||+++ |.+++|++|+++++|+++||.||+.. |
T Consensus 424 ~~G~~G~~l~~AiGaala~----~~~~vv~i~GDGs~~--~~~~~L~ta~~~~l~~~ivv~NN~~~-------------~ 484 (590)
T 1ybh_A 424 GLGAMGFGLPAAIGASVAN----PDAIVVDIDGDGSFI--MNVQELATIRVENLPVKVLLLNNQHL-------------G 484 (590)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHH--HTTTHHHHHHHTTCCEEEEEEECSBC-------------H
T ss_pred CcccccchHHHHHHHHHhC----CCCcEEEEEccchhh--ccHHHHHHHHHhCCCcEEEEEECCcc-------------h
Confidence 4599999999999999995 478999999999997 67899999999999987777666531 2
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~ 349 (721)
.. +.+++..... ......++.+.. .....++...++++||+.+..+ ++.++|.++|+
T Consensus 485 ~~-~~~~~~~~~~---------~~~~~~~~~p~~----------~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~ 541 (590)
T 1ybh_A 485 MV-MQWEDRFYKA---------NRAHTFLGDPAQ----------EDEIFPNMLLFAAACGIPAARV---TKKADLREAIQ 541 (590)
T ss_dssp HH-HHHHHHHSTT---------CCCSCBCSCGGG----------TTSCSSCHHHHHHHTTCCEEEE---CBHHHHHHHHH
T ss_pred HH-HHHHHHhcCC---------cccccccccccc----------ccCCCCCHHHHHHHcCCeEEEe---CCHHHHHHHHH
Confidence 11 1111100000 000000000000 0000124466889999999855 68999999999
Q ss_pred HHHhcCCCCCEEEEEEEeccCCCcc
Q 004968 350 EVASLGSMGPVLVHVVTEENRRAED 374 (721)
Q Consensus 350 ~a~~~~~~~P~lI~v~T~kg~G~~~ 374 (721)
++++ .++|++||+.|.++....|
T Consensus 542 ~a~~--~~gp~liev~~~~~~~~~p 564 (590)
T 1ybh_A 542 TMLD--TPGPYLLDVICPHQEHVLP 564 (590)
T ss_dssp HHHH--SSSCEEEEEECCTTCCCCS
T ss_pred HHHh--CCCCEEEEEEecCCcccCC
Confidence 9987 4899999999999887544
|
| >1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=4.8e-14 Score=165.36 Aligned_cols=180 Identities=17% Similarity=0.209 Sum_probs=118.5
Q ss_pred ccHHHHHHHHhcccCC-CCcEEE-ecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHH
Q 004968 125 LAAVELTVALHHVFHA-PVDKIL-WDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAG 201 (721)
Q Consensus 125 lg~vel~~aL~~vf~~-p~D~iv-~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A 201 (721)
+....+...|...+.. |+|.|+ .|+| |+.|....+.-. ..+++ ....+.|++|+++|+|
T Consensus 461 l~~~~v~~~L~~~l~~~~~~~iv~~~vg~~~~~~~~~~~~~-----~p~~~-------------~~sg~~G~mG~~lpaA 522 (677)
T 1t9b_A 461 IKPQTVIKKLSKVANDTGRHVIVTTGVGQHQMWAAQHWTWR-----NPHTF-------------ITSGGLGTMGYGLPAA 522 (677)
T ss_dssp BCHHHHHHHHHHHHHTTCSCEEEEECSSHHHHHHHHHSCCC-----STTCE-------------ECCCSSCCTTCHHHHH
T ss_pred cCHHHHHHHHHHHhhcCCCCEEEEeCCchHHHHHHHhcccC-----CCCeE-------------EeCCCcchhhchHHHH
Confidence 4444555555544432 566666 5888 555665332210 00111 1112458999999999
Q ss_pred HHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhc
Q 004968 202 LGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSS 281 (721)
Q Consensus 202 ~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~ 281 (721)
+|+|+|. ++++|||++|||+++ |.+++|++|+++++|+++||.||+.. |.. +.+++..
T Consensus 523 iGaalA~----p~~~Vv~i~GDGsf~--~~~~eL~ta~~~~l~v~ivV~NN~~~-------------g~~-~~~~~~~-- 580 (677)
T 1t9b_A 523 IGAQVAK----PESLVIDIDGDASFN--MTLTELSSAVQAGTPVKILILNNEEQ-------------GMV-TQWQSLF-- 580 (677)
T ss_dssp HHHHHHC----TTSEEEEEEEHHHHH--HHGGGHHHHHHHTCCCEEEEEECSSC-------------HHH-HHHHHHH--
T ss_pred HHHHHhC----CCCeEEEEEeehHHh--ccHHHHHHHHHhCCCeEEEEEeCCCc-------------hhh-hhhhhhh--
Confidence 9999994 589999999999996 78899999999999987777777641 211 1111100
Q ss_pred hHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEE
Q 004968 282 KSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVL 361 (721)
Q Consensus 282 ~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~l 361 (721)
| . ....+. ..-.++...++++||+.++.+ ++.++|.++|+++.+ .++|++
T Consensus 581 --~------~---~~~~~~--------------~~~~~d~~~la~a~G~~~~~v---~~~~el~~al~~a~~--~~gp~l 630 (677)
T 1t9b_A 581 --Y------E---HRYSHT--------------HQLNPDFIKLAEAMGLKGLRV---KKQEELDAKLKEFVS--TKGPVL 630 (677)
T ss_dssp --S------T---TCCCSC--------------CCCCCCHHHHHHHTTCEEEEE---CSHHHHHHHHHHHHH--CSSCEE
T ss_pred --c------C---CCcccC--------------cCCCCCHHHHHHHcCCeEEEE---CCHHHHHHHHHHHHH--CCCcEE
Confidence 0 0 000000 001234567889999999866 789999999999987 589999
Q ss_pred EEEEEeccCCCcc
Q 004968 362 VHVVTEENRRAED 374 (721)
Q Consensus 362 I~v~T~kg~G~~~ 374 (721)
|||.|.++....|
T Consensus 631 Iev~~~~~~~~~p 643 (677)
T 1t9b_A 631 LEVEVDKKVPVLP 643 (677)
T ss_dssp EEEEBCSSCCCSS
T ss_pred EEEEecCCcccCC
Confidence 9999999876544
|
| >2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-13 Score=159.05 Aligned_cols=179 Identities=15% Similarity=0.142 Sum_probs=118.3
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+..+|...+ .+++.++.|+| |+.|....+.-. .+ .+.+...+.|++|+++|+|+|
T Consensus 375 l~~~~~~~~l~~~l-~~~~iv~~d~g~~~~~~~~~~~~~-----------------~~-~~~~~~~g~g~mG~~l~~AiG 435 (589)
T 2pgn_A 375 ASMFRAMAEVRKVQ-RPEDIIVTDIGNHTLPMFGGAILQ-----------------RP-RRLVTSMAEGILGCGFPMALG 435 (589)
T ss_dssp CCHHHHHHHHHHTC-CTTCEEEECSSTTHHHHHHHCCCS-----------------ST-TCEESCTTTCCTTCHHHHHHH
T ss_pred cCHHHHHHHHHHhC-CCCCEEEEcCchHHHHHHHhcccC-----------------CC-CcEECCCCcchhhhHHHHHHH
Confidence 44445555554444 35677888999 555655332110 00 011111256999999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+|+|. ++++|||++|||+++ |.+|+|++|+++++|+++||.||+.. +.. +.+++..
T Consensus 436 aala~----~~~~vv~i~GDG~~~--~~~~~L~ta~~~~l~~~ivv~nN~~~-------------~~~-~~~~~~~---- 491 (589)
T 2pgn_A 436 AQLAE----PNSRVFLGTGDGALY--YHFNEFRVAVEHKLPVITMVFTNESY-------------GAN-WTLMNHQ---- 491 (589)
T ss_dssp HHHHC----TTSCEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEECSBC-------------HHH-HHHHHHH----
T ss_pred HHHhC----CCCcEEEEEeeHHHH--hhHHHHHHHHHhCCCeEEEEEECCCc-------------ccc-hHHHHhh----
Confidence 99985 478999999999996 67899999999999988887777641 211 1111000
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVH 363 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~ 363 (721)
| ... +...+-.++...++++||+.++.+ ++.++|.++++++.+ .++|++||
T Consensus 492 ~------~~~------------------~~~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~~a~~--~~gp~lie 542 (589)
T 2pgn_A 492 F------GQN------------------NWTEFMNPDWVGIAKAFGAYGESV---RETGDIAGALQRAID--SGKPALIE 542 (589)
T ss_dssp H------SSC------------------CSCBCCCCCHHHHHHHHTCEEEEC---TTTCCHHHHHHHHHH--HCSCEEEE
T ss_pred c------CCC------------------ccccCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHh--CCCCEEEE
Confidence 0 000 000011234567889999999854 467888999999887 48899999
Q ss_pred EEEeccCCCccc
Q 004968 364 VVTEENRRAEDT 375 (721)
Q Consensus 364 v~T~kg~G~~~a 375 (721)
+.|.++.++.+.
T Consensus 543 v~~~~~~~~~~~ 554 (589)
T 2pgn_A 543 IPVSKTQGLASD 554 (589)
T ss_dssp EECCSSSSTTTC
T ss_pred EEecCCCCcCcc
Confidence 999998876554
|
| >1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.5e-13 Score=157.24 Aligned_cols=130 Identities=15% Similarity=0.141 Sum_probs=92.8
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|.+|+++|+|+|+|+|. ++++|||++|||+++ |.+|+|++|+++++|+++||.||+...+....+... |
T Consensus 411 ~~g~mG~~l~~AiGaala~----~~~~vv~i~GDG~~~--~~~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~q~~~---~ 481 (590)
T 1v5e_A 411 LFATMGIAIPGGLGAKNTY----PDRQVWNIIGDGAFS--MTYPDVVTNVRYNMPVINVVFSNTEYAFIKNKYEDT---N 481 (590)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEECSSCTTGGGTTSSS---C
T ss_pred CCCcccChHHHHHHHHHhC----CCCeEEEEEechHHh--chHHHHHHHHHhCCCCEEEEEECCchHHHHHHHHHh---c
Confidence 5799999999999999994 488999999999997 668999999999999887777765322211100000 0
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~ 349 (721)
+ .+ .+.+ .-.++...++++||+.++.+ ++.++|.++++
T Consensus 482 ----~-~~--------------------~~~~--------------~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~ 519 (590)
T 1v5e_A 482 ----K-NL--------------------FGVD--------------FTDVDYAKIAEAQGAKGFTV---SRIEDMDRVMA 519 (590)
T ss_dssp ----C-SC--------------------CCCC--------------CCCCCHHHHHHHTTSEEEEE---CBHHHHHHHHH
T ss_pred ----C-CC--------------------cccc--------------CCCCCHHHHHHHcCCEEEEE---CCHHHHHHHHH
Confidence 0 00 0000 00123456789999999855 57899999999
Q ss_pred HHHhc-CCCCCEEEEEEEeccC
Q 004968 350 EVASL-GSMGPVLVHVVTEENR 370 (721)
Q Consensus 350 ~a~~~-~~~~P~lI~v~T~kg~ 370 (721)
++.+. ..++|++||+.|.++.
T Consensus 520 ~a~~~~~~~gp~liev~~~~~~ 541 (590)
T 1v5e_A 520 EAVAANKAGHTVVIDCKITQDR 541 (590)
T ss_dssp HHHHHHHTTCCEEEEEECCSCC
T ss_pred HHHHhcCCCCCEEEEEEecccc
Confidence 88762 0178999999999876
|
| >1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.7e-13 Score=154.83 Aligned_cols=172 Identities=20% Similarity=0.230 Sum_probs=112.0
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+...|...+ .+++.++.|+| |+.|...++. ... +. +.+...+ |++|+++|+|+|
T Consensus 353 ~~~~~~~~~l~~~l-~~~~iv~~d~g~~~~~~~~~~~--------------~~~-~~---~~~~~~g-g~~G~~l~~A~G 412 (528)
T 1q6z_A 353 LHPETVFDTLNDMA-PENAIYLNESTSTTAQMWQRLN--------------MRN-PG---SYYFCAA-GGLGFALPAAIG 412 (528)
T ss_dssp BCHHHHHHHHHHHS-CTTCEEEEECTTSHHHHHHHCC--------------CCS-SS---CEEECTT-CCTTSHHHHHHH
T ss_pred cCHHHHHHHHHhhC-CCCeEEEECCcccHHHHHHhcc--------------ccC-CC---cEECCCC-ccccchHHHHHH
Confidence 44444555554443 35667788998 6555553221 000 00 1111125 999999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+|+|. ++++|||++|||+++ |.+|+|++|+++++|+++||.||+.. +.. +.+++....+
T Consensus 413 ~a~a~----~~~~vv~~~GDG~~~--~~~~~l~~a~~~~l~~~ivv~nN~~~-------------~~~-~~~~~~~~~~- 471 (528)
T 1q6z_A 413 VQLAE----PERQVIAVIGDGSAN--YSISALWTAAQYNIPTIFVIMNNGTY-------------GAL-RWFAGVLEAE- 471 (528)
T ss_dssp HHHHC----TTSCEEEEEEHHHHT--TTGGGHHHHHHHTCCCEEEEEECSBC-------------HHH-HHHHHHHTCC-
T ss_pred HHHhC----CCCcEEEEECCcHHH--hhHHHHHHHHHhCCCeEEEEEeCCcc-------------hHh-HHHHHHhcCC-
Confidence 99995 478999999999997 56899999999999998888777631 211 1111100000
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVH 363 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~ 363 (721)
...+.+ +-..+...++++||+.++.+ ++.++|.++++++++ .++|++||
T Consensus 472 ------------~~~~~~--------------~~~~d~~~~a~a~G~~~~~v---~~~~~l~~al~~a~~--~~gp~lie 520 (528)
T 1q6z_A 472 ------------NVPGLD--------------VPGIDFRALAKGYGVQALKA---DNLEQLKGSLQEALS--AKGPVLIE 520 (528)
T ss_dssp ------------SCCSCB--------------CCCCCHHHHHHHHTCEEEEE---SSHHHHHHHHHHHHT--CSSCEEEE
T ss_pred ------------CcccCC--------------CCCCCHHHHHHHcCCeEEEe---CCHHHHHHHHHHHHH--CCCcEEEE
Confidence 000100 01134456889999999844 467899999999987 58999999
Q ss_pred EEEec
Q 004968 364 VVTEE 368 (721)
Q Consensus 364 v~T~k 368 (721)
+.|.+
T Consensus 521 v~~~~ 525 (528)
T 1q6z_A 521 VSTVS 525 (528)
T ss_dssp EEBCC
T ss_pred EEecC
Confidence 99975
|
| >2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.1e-13 Score=157.25 Aligned_cols=128 Identities=16% Similarity=0.178 Sum_probs=92.9
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|++|+++|+|+|+|+|. ++++|||++|||+++ +.+++|++|+++++|+++||.||+.. +
T Consensus 434 g~g~mG~~l~~AiGaa~a~----~~~~vv~i~GDG~~~--~~~~~L~~a~~~~l~~~ivv~NN~~~-------------~ 494 (573)
T 2iht_A 434 GCSSFGYGIPAAIGAQMAR----PDQPTFLIAGDGGFH--SNSSDLETIARLNLPIVTVVVNNDTN-------------G 494 (573)
T ss_dssp SSCCTTCHHHHHHHHHHHS----TTSCEEEEEEHHHHH--HTGGGHHHHHHHTCCCEEEEEECSBC-------------H
T ss_pred CCcccccHHHHHHHHHHhC----CCCcEEEEEccHHHH--hHHHHHHHHHHhCCCeEEEEEECCcc-------------h
Confidence 5699999999999999995 478999999999997 66899999999999987777666631 2
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~ 349 (721)
.. +.+++.. | ... .+. ...+-.++...++++||+.++.+ ++.++|.++++
T Consensus 495 ~~-~~~~~~~----~------~~~----~~~------------~~~~~~~d~~~~a~a~G~~~~~v---~~~~~l~~al~ 544 (573)
T 2iht_A 495 LI-ELYQNIG----H------HRS----HDP------------AVKFGGVDFVALAEANGVDATRA---TNREELLAALR 544 (573)
T ss_dssp HH-HHHHHHH----H------SSC----CGG------------GTBCCCCCHHHHHHHTTCEEEEC---CSHHHHHHHHH
T ss_pred hh-HHHHHHh----c------CCC----cCc------------cccCCCCCHHHHHHHcCCeEEEe---CCHHHHHHHHH
Confidence 11 1111100 0 000 000 00111134466899999999865 68999999999
Q ss_pred HHHhcCCCCCEEEEEEEec
Q 004968 350 EVASLGSMGPVLVHVVTEE 368 (721)
Q Consensus 350 ~a~~~~~~~P~lI~v~T~k 368 (721)
++++ .++|++||+.|.+
T Consensus 545 ~a~~--~~gp~liev~~~~ 561 (573)
T 2iht_A 545 KGAE--LGRPFLIEVPVNY 561 (573)
T ss_dssp HHHT--SSSCEEEEEEBCC
T ss_pred HHHh--CCCCEEEEEECCC
Confidence 9987 5899999999988
|
| >2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.9e-13 Score=157.26 Aligned_cols=175 Identities=11% Similarity=0.072 Sum_probs=114.8
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGM 204 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~ 204 (721)
+....+...|...+ .+++.++.|+|...|.. + +... +.+ ...+...+.|++|+++|+|+|+
T Consensus 365 ~~~~~~~~~l~~~l-~~~~iv~~d~G~~~~~~-----~---------~~~~---~~~-~~~~~~~~~g~mG~~l~~A~Ga 425 (563)
T 2vk8_A 365 LKQEWMWNQLGNFL-QEGDVVIAETGTSAFGI-----N---------QTTF---PNN-TYGISQVLWGSIGFTTGATLGA 425 (563)
T ss_dssp CCHHHHHHHHTTTC-CTTCEEEECTTHHHHHG-----G---------GSCC---CSS-CEEECCTTTCCTTHHHHHHHHH
T ss_pred cCHHHHHHHHHHhC-CCCCEEEECCchHHHHH-----h---------hcCc---CCC-CeEEcccchhhhhhHHHHHHHH
Confidence 44455555564444 35778889999533321 0 0000 100 0011113579999999999999
Q ss_pred HHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHH
Q 004968 205 AVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSF 284 (721)
Q Consensus 205 AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~ 284 (721)
|+|.+.++++++|||++|||+++ |.+++|++|+++++|+++||.||+.. +.. +.+.... .
T Consensus 426 ala~~~~~~~~~vv~~~GDG~~~--~~~~el~ta~~~~l~~~ivv~nN~~~-------------~~~-~~~~~~~--~-- 485 (563)
T 2vk8_A 426 AFAAEEIDPKKRVILFIGDGSLQ--LTVQEISTMIRWGLKPYLFVLNNDGY-------------TIQ-KLIHGPK--A-- 485 (563)
T ss_dssp HHHHHHHCTTCCEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEESSSC-------------HHH-HHHSCTT--C--
T ss_pred HHhCcccCCCCCEEEEEcchHhh--ccHHHHHHHHHcCCCcEEEEEECCcc-------------hhh-hhhhCCC--C--
Confidence 99998888889999999999996 78999999999999988777666631 111 0000000 0
Q ss_pred HHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCce---EEeccCCCCHHHHHHHHH-HHHhcCCCCCE
Q 004968 285 RQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLY---YIGPVDGHNIEDLISVLQ-EVASLGSMGPV 360 (721)
Q Consensus 285 ~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~---~~g~vdGhd~~~l~~al~-~a~~~~~~~P~ 360 (721)
.+ .++-.++...++++||+. ++.+ ++.++|.++++ ++.+. .++|+
T Consensus 486 --------------------------~~-~~~~~~d~~~~a~a~G~~~~~~~~v---~~~~el~~al~~~a~~~-~~~p~ 534 (563)
T 2vk8_A 486 --------------------------QY-NEIQGWDHLSLLPTFGAKDYETHRV---ATTGEWDKLTQDKSFND-NSKIR 534 (563)
T ss_dssp --------------------------GG-GCCCCCCGGGHHHHTTCSSEEEEEE---CBHHHHHHHHTCTTTTS-CSSEE
T ss_pred --------------------------Cc-ccCCCCCHHHHHHHhCCCCCcEEEe---cCHHHHHHHHHHHHHhC-CCCcE
Confidence 00 011123456789999998 7644 57899999998 77652 34799
Q ss_pred EEEEEEecc
Q 004968 361 LVHVVTEEN 369 (721)
Q Consensus 361 lI~v~T~kg 369 (721)
+||++|.+.
T Consensus 535 liev~~~~~ 543 (563)
T 2vk8_A 535 MIEVMLPVF 543 (563)
T ss_dssp EEEEECCTT
T ss_pred EEEEEeCcc
Confidence 999999764
|
| >1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 | Back alignment and structure |
|---|
Probab=99.40 E-value=5.5e-13 Score=153.08 Aligned_cols=170 Identities=15% Similarity=0.139 Sum_probs=111.9
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGM 204 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~ 204 (721)
+....+...|...+ .+++.|+.|+|...+... +... +.+ ...+...+.|++|+++|+|+|+
T Consensus 360 ~~~~~~~~~l~~~l-~~~~ivv~d~G~~~~~~~--------------~~~~---~~~-~~~~~~~~~g~mG~~l~~A~G~ 420 (552)
T 1ovm_A 360 LTQENFWRTLQTFI-RPGDIILADQGTSAFGAI--------------DLRL---PAD-VNFIVQPLWGSIGYTLAAAFGA 420 (552)
T ss_dssp CCHHHHHHHHHHHC-CTTCEEEECTTHHHHHHT--------------TCCC---CSS-CEEECCTTTCCTTHHHHHHHHH
T ss_pred cCHHHHHHHHHHhc-CCCCEEEECCchHHHHHH--------------hccc---CCC-CeEEechhhHhhhhHHHHHHHH
Confidence 44444555554444 367888899995333321 0000 110 0011113579999999999999
Q ss_pred HHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHH
Q 004968 205 AVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSF 284 (721)
Q Consensus 205 AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~ 284 (721)
|+|. ++++|||++|||+++ |.+++|++|+++++|+++||.||+.. +.. +.+... ...
T Consensus 421 a~a~----~~~~vv~~~GDG~~~--~~~~el~ta~~~~l~~~ivv~nN~~~-------------~~~-~~~~~~--~~~- 477 (552)
T 1ovm_A 421 QTAC----PNRRVIVLTGDGAAQ--LTIQELGSMLRDKQHPIILVLNNEGY-------------TVE-RAIHGA--EQR- 477 (552)
T ss_dssp HHHC----TTSCEEEEEEHHHHH--HHTTHHHHHHHTTCCCEEEEEESSSC-------------HHH-HHHSCT--TCG-
T ss_pred HHhC----CCCcEEEEECchHHH--hHHHHHHHHHHhCCCCEEEEEECCCC-------------eEE-EeeccC--CCC-
Confidence 9994 478999999999996 78999999999999977777666631 111 000000 000
Q ss_pred HHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCc----eEEeccCCCCHHHHHHHHHHHHhcCCCCCE
Q 004968 285 RQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGL----YYIGPVDGHNIEDLISVLQEVASLGSMGPV 360 (721)
Q Consensus 285 ~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~----~~~g~vdGhd~~~l~~al~~a~~~~~~~P~ 360 (721)
+ ...-.++...++++||+ .+..+ ++.++|.++++++++ .++|+
T Consensus 478 ---------------------------~-~~~~~~d~~~~a~a~G~~~~~~~~~v---~~~~~l~~al~~a~~--~~gp~ 524 (552)
T 1ovm_A 478 ---------------------------Y-NDIALWNWTHIPQALSLDPQSECWRV---SEAEQLADVLEKVAH--HERLS 524 (552)
T ss_dssp ---------------------------G-GCCCCCCGGGSTTTSCSSCCEEEEEE---CBHHHHHHHHHHHTT--CSSEE
T ss_pred ---------------------------c-ccCCCCCHHHHHHHhCCCcCCCEEEe---CCHHHHHHHHHHHHh--CCCCE
Confidence 0 01112355778999999 87744 579999999999887 58899
Q ss_pred EEEEEEecc
Q 004968 361 LVHVVTEEN 369 (721)
Q Consensus 361 lI~v~T~kg 369 (721)
+||+.|.+.
T Consensus 525 liev~~~~~ 533 (552)
T 1ovm_A 525 LIEVMLPKA 533 (552)
T ss_dssp EEEEECCTT
T ss_pred EEEEEcCcc
Confidence 999999874
|
| >2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.40 E-value=9.7e-14 Score=161.48 Aligned_cols=187 Identities=17% Similarity=0.135 Sum_probs=113.7
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
+....+..+|...+ .+++.|+.|+| |+.|....+.-+. .++ | ...-+.|++|+++|+|+|
T Consensus 393 ~~~~~~~~~L~~~l-~~~~ivv~d~G~~~~~~~~~~~~~~-----~~~------~-------~~~g~~G~~G~~l~~AiG 453 (616)
T 2pan_A 393 VKPQRVYEEMNKAF-GRDVCYVTTIGLSQIAAAQMLHVFK-----DRH------W-------INCGQAGPLGWTIPAALG 453 (616)
T ss_dssp BCHHHHHHHHHHHS-CTTEEEEECSSHHHHHHHHHCCCCS-----TTS------E-------EECTTTCCTTCHHHHHHH
T ss_pred cCHHHHHHHHHHhC-CCCcEEEEcCcHHHHHHHHhcccCC-----CCe------E-------EcCCCcccccchHHHHHH
Confidence 44444555554444 24666778999 5556553221100 011 1 111245999999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+|+|. ++++|||++|||+++ |.+++|++|+.+++|+++||.||+.. | +.+.+++....+
T Consensus 454 aala~----~~~~vv~i~GDGs~~--~~~~~L~ta~~~~l~~~ivv~NN~~~-------------~-~~~~~~~~~~~~- 512 (616)
T 2pan_A 454 VCAAD----PKRNVVAISGDFDFQ--FLIEELAVGAQFNIPYIHVLVNNAYL-------------G-LIRQSQRAFDMD- 512 (616)
T ss_dssp HHHHC----TTCEEEEEEEHHHHH--HTGGGHHHHHHTTCCCEEEEEECSBC-------------H-HHHHHGGGGTCC-
T ss_pred HHHhC----CCCcEEEEEcchhhh--CCHHHHHHHHHhCCCeEEEEEECCcc-------------h-HHHHHHHHhcCC-
Confidence 99995 488999999999997 67899999999999987777777632 1 111111110000
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHh----cCCCCC
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVAS----LGSMGP 359 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~----~~~~~P 359 (721)
.+. . ....+..... ......+...++++||+.++.+ ++.++|.++|+++++ . ++|
T Consensus 513 ---~~~--~--~~~~~~~~~~---------~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~~a~~~~~~~--~gp 571 (616)
T 2pan_A 513 ---YCV--Q--LAFENINSSE---------VNGYGVDHVKVAEGLGCKAIRV---FKPEDIAPAFEQAKALMAQY--RVP 571 (616)
T ss_dssp ---CSC--B--CCCCCTTCGG---------GTTCCCCHHHHHHHTTCEEEEE---CSGGGHHHHHHHHHHHHHHH--CSC
T ss_pred ---ccc--c--cccccccccc---------CCCCCCCHHHHHHHcCCeEEEE---CCHHHHHHHHHHHHhhcccC--CCc
Confidence 000 0 0000000000 0000123456889999999865 578899999988765 3 789
Q ss_pred EEEEEEEeccCCC
Q 004968 360 VLVHVVTEENRRA 372 (721)
Q Consensus 360 ~lI~v~T~kg~G~ 372 (721)
++||+.|.++.-.
T Consensus 572 ~lIev~~~~~~~~ 584 (616)
T 2pan_A 572 VVVEVILERVTNI 584 (616)
T ss_dssp EEEEEEBCSCCCC
T ss_pred EEEEEEecccccC
Confidence 9999999988743
|
| >2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus} | Back alignment and structure |
|---|
Probab=99.36 E-value=8.1e-13 Score=152.16 Aligned_cols=125 Identities=14% Similarity=0.173 Sum_probs=92.8
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|++|+++|+|+|+|+|. ++++|||++|||+++ |.+++|++|+++++|+++||.||+.. |
T Consensus 407 ~~g~mG~~l~~A~G~ala~----~~~~vv~~~GDG~~~--~~~~eL~ta~~~~l~~~ivv~nN~~~-------------~ 467 (566)
T 2vbi_A 407 QWGHIGWSVPSAFGNAMGS----QDRQHVVMVGDGSFQ--LTAQEVAQMVRYELPVIIFLINNRGY-------------V 467 (566)
T ss_dssp TTCCTTTHHHHHHHHHHTC----TTSEEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEECSSC-------------H
T ss_pred cccchhhHHHHHHHHHHhC----CCCcEEEEEcchHHH--hhHHHHHHHHHhCCCcEEEEEECCcc-------------e
Confidence 4689999999999999984 478999999999996 77899999999999877666666531 1
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCc-----eEEeccCCCCHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGL-----YYIGPVDGHNIEDL 344 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~-----~~~g~vdGhd~~~l 344 (721)
.. +.++ ...| .+.-.++...++++||+ .++.+ ++.++|
T Consensus 468 ~~-~~~~----~~~~-----------------------------~~~~~~d~~~~a~a~G~~~~~~~~~~v---~~~~el 510 (566)
T 2vbi_A 468 IE-IAIH----DGPY-----------------------------NYIKNWDYAGLMEVFNAGEGHGLGLKA---TTPKEL 510 (566)
T ss_dssp HH-HTTS----CCGG-----------------------------GCCCCCCTTTHHHHHHTTTCCCEEEEE---CSHHHH
T ss_pred EE-Eeec----cCCc-----------------------------cCCCCCCHHHHHHHcCCCCCCccEEEe---CCHHHH
Confidence 11 0000 0000 00112345678999999 88865 689999
Q ss_pred HHHHHHHHhcCCCCCEEEEEEEeccCC
Q 004968 345 ISVLQEVASLGSMGPVLVHVVTEENRR 371 (721)
Q Consensus 345 ~~al~~a~~~~~~~P~lI~v~T~kg~G 371 (721)
.++++++.+. .++|++||++|.+...
T Consensus 511 ~~al~~a~~~-~~gp~liev~~~~~~~ 536 (566)
T 2vbi_A 511 TEAIARAKAN-TRGPTLIECQIDRTDC 536 (566)
T ss_dssp HHHHHHHHHC-CSSCEEEEEECCTTCC
T ss_pred HHHHHHHHhc-CCCcEEEEEEeCcccC
Confidence 9999999872 2789999999987653
|
| >2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.2e-12 Score=150.80 Aligned_cols=125 Identities=18% Similarity=0.127 Sum_probs=91.1
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|.+|+++|+|+|+|+|. ++++|||++|||+++ |.+++|++|+++++|+++||.||+.. |
T Consensus 423 ~~g~mG~~l~~A~Gaala~----~~~~vv~~~GDG~~~--~~~~eL~ta~~~~l~~~ivv~nN~~~-------------~ 483 (570)
T 2vbf_A 423 LWGSIGYTFPAALGSQIAD----KESRHLLFIGDGSLQ--LTVQELGLSIREKLNPICFIINNDGY-------------T 483 (570)
T ss_dssp TTCCTTTHHHHHHHHHHHC----TTSEEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEESSSC-------------H
T ss_pred cchhhhhhHHHHHHHHHhC----CCCcEEEEEcchhhh--cCHHHHHHHHHcCCCCEEEEEECCch-------------H
Confidence 5699999999999999994 489999999999996 67899999999999977777766541 1
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCce-----EEeccCCCCHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLY-----YIGPVDGHNIEDL 344 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~-----~~g~vdGhd~~~l 344 (721)
.. +.+... ... + .+.-.++...++++||+. +..+ ++.++|
T Consensus 484 ~~-~~~~~~--~~~----------------------------~-~~~~~~d~~~~a~a~G~~~~~~~~~~v---~~~~el 528 (570)
T 2vbf_A 484 VE-REIHGP--TQS----------------------------Y-NDIPMWNYSKLPETFGATEDRVVSKIV---RTENEF 528 (570)
T ss_dssp HH-HHHSCT--TCG----------------------------G-GCCCCCCGGGHHHHTTCCTTTEEEEEE---CBHHHH
T ss_pred HH-HHHhcc--CCC----------------------------c-cCCCCCCHHHHHHHcCCCcCCcceEEe---cCHHHH
Confidence 11 000000 000 0 011123457789999997 6645 679999
Q ss_pred HHHHHHH-HhcCCCCCEEEEEEEeccC
Q 004968 345 ISVLQEV-ASLGSMGPVLVHVVTEENR 370 (721)
Q Consensus 345 ~~al~~a-~~~~~~~P~lI~v~T~kg~ 370 (721)
.++++++ .+ .++|++||+.|.+..
T Consensus 529 ~~al~~a~~~--~~~p~liev~~~~~~ 553 (570)
T 2vbf_A 529 VSVMKEAQAD--VNRMYWIELVLEKED 553 (570)
T ss_dssp HHHHHHHHHC--TTSEEEEEEECCTTC
T ss_pred HHHHHHHHhc--CCCcEEEEEEcCccc
Confidence 9999984 55 578999999998653
|
| >2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=8.6e-12 Score=143.52 Aligned_cols=127 Identities=9% Similarity=0.043 Sum_probs=93.4
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCC-CcCCCccCCCCcch
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRH-SLHPKIEESPKTSI 268 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~-~s~~t~~~~~~~~~ 268 (721)
+.|++|+++|+|+|+|+| ++++|||++|||+++ |.+++|++|+++++|+++||.||+. .++..++. ..
T Consensus 419 ~~g~~G~~l~~AiGaa~a-----~~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~----~~ 487 (564)
T 2q28_A 419 TWGVMGIGMGYAIGASVT-----SGSPVVAIEGDSAFG--FSGMEIETICRYNLPVTIVIFNNGGIYRGDGVDL----SG 487 (564)
T ss_dssp TTTCTTCHHHHHHHHHHH-----HCSCEEEEEEHHHHH--TTGGGHHHHHHTTCCEEEEEEECSBSSCSCCCCT----TS
T ss_pred CCCcccchHHHHHHHhhc-----CCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCchhHHHHHHHH----hc
Confidence 458999999999999998 478999999999996 7789999999999998888888873 11110000 00
Q ss_pred hhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHH
Q 004968 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (721)
Q Consensus 269 g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al 348 (721)
+.. . . +. ...-.++...++++||+.+..+ ++.++|.++|
T Consensus 488 ~~~------~----------------~---~~-------------~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al 526 (564)
T 2q28_A 488 AGA------P----------------S---PT-------------DLLHHARYDKLMDAFRGVGYNV---TTTDELRHAL 526 (564)
T ss_dssp SCC------C----------------C---TT-------------BCCTTCCGGGGGGGGTCEEEEE---CSHHHHHHHH
T ss_pred cCC------c----------------c---cc-------------ccCCCCCHHHHHHHcCCeEEEe---CCHHHHHHHH
Confidence 000 0 0 00 0000134577899999999866 6899999999
Q ss_pred HHHHhcCCCCCEEEEEEEeccC
Q 004968 349 QEVASLGSMGPVLVHVVTEENR 370 (721)
Q Consensus 349 ~~a~~~~~~~P~lI~v~T~kg~ 370 (721)
+++.+ .++|++||+.|.+..
T Consensus 527 ~~a~~--~~~p~liev~~~~~~ 546 (564)
T 2q28_A 527 TTGIQ--SRKPTIINVVIDPAA 546 (564)
T ss_dssp HHHHH--HTSCEEEEEEBCTTS
T ss_pred HHHHh--CCCCEEEEEEecccc
Confidence 99886 488999999998754
|
| >2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.7e-12 Score=149.63 Aligned_cols=171 Identities=13% Similarity=0.166 Sum_probs=110.5
Q ss_pred ccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHH
Q 004968 125 LAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGM 204 (721)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~ 204 (721)
+....+...|...+. +++.|+.|+|...|....+. ++.+ ...+...+.|++|+++|+|+|+
T Consensus 365 ~~~~~~~~~l~~~l~-~~~iv~~d~G~~~~~~~~~~-----------------~~~~-~~~~~~~~~g~~G~~l~~A~G~ 425 (568)
T 2wvg_A 365 LVNAEIARQVEALLT-PNTTVIAETGDSWFNAQRMK-----------------LPNG-ARVEYEMQWGHIGWSVPAAFGY 425 (568)
T ss_dssp CCHHHHHHHHHTTCC-TTEEEEECSSHHHHHHHTCC-----------------CCTT-CEEECCTTTCCTTTHHHHHHHH
T ss_pred cCHHHHHHHHHHhCC-CCCEEEEcCcHHHHHHhhcc-----------------cCCC-CeEEeCCCcchhhhHHHHHHHH
Confidence 444555555544442 56677889995344331111 0000 0001112568999999999999
Q ss_pred HHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHH
Q 004968 205 AVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSF 284 (721)
Q Consensus 205 AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~ 284 (721)
|+|. ++++||+++|||+++ |.+++|++|+++++|+++||.||+.. +.. +.++ ...|
T Consensus 426 ala~----~~~~vv~i~GDGs~~--~~~~el~ta~~~~l~~~ivv~NN~~~-------------~~~-~~~~----~~~~ 481 (568)
T 2wvg_A 426 AVGA----PERRNILMVGDGSFQ--LTAQEVAQMVRLKLPVIIFLINNYGY-------------TIE-VMIH----DGPY 481 (568)
T ss_dssp HHHC----TTSEEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEECSSC-------------HHH-HTTS----CCGG
T ss_pred HHhC----CCCcEEEEEcChhHh--ccHHHHHHHHHcCCCcEEEEEECCcc-------------eEe-eeec----cCCC
Confidence 9995 489999999999996 78999999999999987776665531 111 0000 0000
Q ss_pred HHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCc---------eEEeccCCCCHHHHHHHHHHHHhcC
Q 004968 285 RQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGL---------YYIGPVDGHNIEDLISVLQEVASLG 355 (721)
Q Consensus 285 ~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~---------~~~g~vdGhd~~~l~~al~~a~~~~ 355 (721)
. +.-.++...++++||+ .+..+ ++.++|.++++++.+.
T Consensus 482 ~-----------------------------~~~~~d~~~~a~a~G~~~~~~~~~~~~~~v---~~~~el~~al~~a~~~- 528 (568)
T 2wvg_A 482 N-----------------------------NIKNWDYAGLMEVFNGNGGYDSGAGKGLKA---KTGGELAEAIKVALAN- 528 (568)
T ss_dssp G-----------------------------CCCCCCHHHHHHHHHCTTSSSCCCCEEEEE---SBHHHHHHHHHHHHHC-
T ss_pred c-----------------------------CCCCCCHHHHHHHhCCCcccccCCcceEEe---CCHHHHHHHHHHHHhc-
Confidence 0 0001233557788898 77744 6899999999999872
Q ss_pred CCCCEEEEEEEeccCC
Q 004968 356 SMGPVLVHVVTEENRR 371 (721)
Q Consensus 356 ~~~P~lI~v~T~kg~G 371 (721)
.++|++||+.|.++..
T Consensus 529 ~~gp~liev~~~~~~~ 544 (568)
T 2wvg_A 529 TDGPTLIECFIGREDC 544 (568)
T ss_dssp CSSCEEEEEECCTTCC
T ss_pred CCCcEEEEEEcCcccc
Confidence 2789999999987643
|
| >2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.33 E-value=3e-12 Score=148.58 Aligned_cols=130 Identities=17% Similarity=0.164 Sum_probs=92.2
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
|.|.+|+++|+|+|+|+|. +++|||++|||+++ |.+++|++|+++++|+++||.||+..++
T Consensus 453 G~~~ig~~l~~AiGaala~-----~~~vv~i~GDGsf~--~~~~eL~ta~~~~lp~~ivv~NN~~~~i------------ 513 (604)
T 2x7j_A 453 GANGIDGVVSSAMGVCEGT-----KAPVTLVIGDLSFY--HDLNGLLAAKKLGIPLTVILVNNDGGGI------------ 513 (604)
T ss_dssp TTCCSSSHHHHHHHHHHHH-----TSCEEEEEEHHHHH--HTGGGGHHHHHHCCCEEEEEEECSSCGG------------
T ss_pred CcCCcCcHHHHHHHHHhcC-----CCcEEEEEccHHHH--hHHHHHHHhhhcCCCeEEEEEeCCCCcc------------
Confidence 4577899999999999993 68999999999996 6678999999999998888877754211
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~ 349 (721)
. +.+...+....|. ++......++...++++||+.+..+ ++.++|.++|+
T Consensus 514 -~-~~~~~~q~~~~~~-------------------------~~~~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~ 563 (604)
T 2x7j_A 514 -F-SFLPQASEKTHFE-------------------------DLFGTPTGLDFKHAAALYGGTYSCP---ASWDEFKTAYA 563 (604)
T ss_dssp -G-GGSGGGSCHHHHH-------------------------HHTTCCCCCCTHHHHHHTTCEEECC---SSHHHHHHHCC
T ss_pred -c-ccCCCCccchhhH-------------------------hhccCCCCCCHHHHHHHcCCeEEec---CCHHHHHHHHH
Confidence 1 0111111001110 1111111245577899999999855 57999999998
Q ss_pred HHHhcCCCCCEEEEEEEeccC
Q 004968 350 EVASLGSMGPVLVHVVTEENR 370 (721)
Q Consensus 350 ~a~~~~~~~P~lI~v~T~kg~ 370 (721)
++.+ .++|++||+.|.++.
T Consensus 564 ~a~~--~~gp~liev~~~~~~ 582 (604)
T 2x7j_A 564 PQAD--KPGLHLIEIKTDRQS 582 (604)
T ss_dssp CCCS--SCCEEEEEEECCHHH
T ss_pred HHHh--CCCCEEEEEECCccc
Confidence 8876 589999999997653
|
| >2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=9.1e-12 Score=143.48 Aligned_cols=126 Identities=11% Similarity=0.081 Sum_probs=93.3
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCC-CcCCCccCCCCcch
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRH-SLHPKIEESPKTSI 268 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~-~s~~t~~~~~~~~~ 268 (721)
+.|++|+++|+|+|+|+| ++++||+++|||+++ |.+++|++|+++++|+++||.||+. .+....+. .
T Consensus 424 ~~g~~G~~l~~AiGaala-----~~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~-----~ 491 (568)
T 2c31_A 424 TWGVMGIGMGYCVAAAAV-----TGKPVIAVEGDSAFG--FSGMELETICRYNLPVTVIIMNNGGIYKGNEADP-----Q 491 (568)
T ss_dssp TTTCSSCHHHHHHHHHHH-----HCSCEEEEEEHHHHH--TTGGGHHHHHHTTCCEEEEEEESSBSSCSCCCCS-----B
T ss_pred CCccccccHHHHHHHHhC-----CCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCchhHHHHHHHh-----h
Confidence 458999999999999998 478999999999996 7899999999999999888888873 11110000 0
Q ss_pred hhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHH
Q 004968 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (721)
Q Consensus 269 g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al 348 (721)
+.- . . + . ..-.++...++++||+.+..+ ++.++|.++|
T Consensus 492 ~~~------~----------------~---~-------------~-~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al 529 (568)
T 2c31_A 492 PGV------I----------------S---C-------------T-RLTRGRYDMMMEAFGGKGYVA---NTPAELKAAL 529 (568)
T ss_dssp TTB------C----------------C---T-------------T-BCCCCCHHHHHHTTTCEEEEE---SSHHHHHHHH
T ss_pred cCC------c----------------c---c-------------C-cCCCCCHHHHHHHcCCeEEEe---CCHHHHHHHH
Confidence 000 0 0 0 0 000123456789999999866 6899999999
Q ss_pred HHHHhcCCCCCEEEEEEEeccCC
Q 004968 349 QEVASLGSMGPVLVHVVTEENRR 371 (721)
Q Consensus 349 ~~a~~~~~~~P~lI~v~T~kg~G 371 (721)
+++.+ .++|++||+.|.+...
T Consensus 530 ~~a~~--~~~p~liev~~~~~~~ 550 (568)
T 2c31_A 530 EEAVA--SGKPCLINAMIDPDAG 550 (568)
T ss_dssp HHHHH--HTSCEEEEEEBCTTSS
T ss_pred HHHHh--CCCCEEEEEEeccccC
Confidence 99886 4889999999987643
|
| >2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=5e-12 Score=145.56 Aligned_cols=123 Identities=18% Similarity=0.190 Sum_probs=91.6
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|.+|+++|+|+|+|+|. ++++|||++|||+++ |++++|++|+++++|+++||.||+.. +
T Consensus 420 ~~g~mG~~l~~A~G~ala~----~~~~vv~i~GDG~~~--~~~~~l~ta~~~~l~~~ivv~nN~~~-------------~ 480 (565)
T 2nxw_A 420 YYAGMGFGVPAGIGAQCVS----GGKRILTVVGDGAFQ--MTGWELGNCRRLGIDPIVILFNNASW-------------E 480 (565)
T ss_dssp TTCCTTCHHHHHHHHHHHT----TTCCEEEEEEHHHHH--HHGGGGGGHHHHTCCCEEEEEECSBC-------------H
T ss_pred ccccccccchHHHHHHHhC----CCCcEEEEEechHHH--hhHHHHHHHHHhCCCCEEEEEECCCC-------------c
Confidence 4589999999999999995 478999999999997 99999999999999977776666531 1
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~ 349 (721)
.+.. . +....| ..+-.++...++++||+.+..+ ++.++|.++|+
T Consensus 481 ~~~~-~---~~~~~~-----------------------------~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~ 524 (565)
T 2nxw_A 481 MLRT-F---QPESAF-----------------------------NDLDDWRFADMAAGMGGDGVRV---RTRAELKAALD 524 (565)
T ss_dssp HHHH-H---CTTCGG-----------------------------GBCCCCCHHHHTGGGTSEEEEE---CBHHHHHHHHH
T ss_pred EEee-e---cccCCC-----------------------------CcCCCCCHHHHHHHcCCCEEEe---CCHHHHHHHHH
Confidence 1100 0 000000 0111234466899999999865 57899999999
Q ss_pred HHHhcCCCCCE-EEEEEEecc
Q 004968 350 EVASLGSMGPV-LVHVVTEEN 369 (721)
Q Consensus 350 ~a~~~~~~~P~-lI~v~T~kg 369 (721)
++.+ .++|+ +||+.|.+.
T Consensus 525 ~a~~--~~gp~~liev~~~~~ 543 (565)
T 2nxw_A 525 KAFA--TRGRFQLIEAMIPRG 543 (565)
T ss_dssp HHHH--CCSSCEEEEEECCTT
T ss_pred HHHh--cCCCeEEEEEEcccc
Confidence 9987 47898 999999764
|
| >3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.24 E-value=8.9e-12 Score=143.85 Aligned_cols=129 Identities=14% Similarity=0.143 Sum_probs=82.7
Q ss_pred CcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhh
Q 004968 194 GCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSS 273 (721)
Q Consensus 194 ~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~ 273 (721)
+|.++|+|+|+|+ ++++|||++|||+|+ |.+++|++|+++++|+++||.||+.. |.. +
T Consensus 438 ~~g~l~~AiGaa~------~~~~vv~i~GDGsf~--~~~~eL~ta~~~~l~~~ivv~NN~~~-------------g~~-~ 495 (578)
T 3lq1_A 438 IDGVVSSALGASV------VFQPMFLLIGDLSFY--HDMNGLLMAKKYKMNLTIVIVNNDGG-------------GIF-S 495 (578)
T ss_dssp SSSHHHHHHHHTT------TSSSEEEEEEHHHHH--HTGGGGHHHHHTTCCEEEEEECCC--------------------
T ss_pred cccHHHHHHHHhc------CCCCEEEEEchHHHH--hhHHHHHhhccCCCCeEEEEEECCcC-------------ccc-c
Confidence 3447999999964 378999999999996 88899999999999999999999752 211 1
Q ss_pred hhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHh
Q 004968 274 TLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVAS 353 (721)
Q Consensus 274 ~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~ 353 (721)
.+...+..+.|.+. ......++...++++||+.+..+ ++.++|.++|+++++
T Consensus 496 ~~~~~~~~~~~~~~-------------------------~~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~~a~~ 547 (578)
T 3lq1_A 496 FLPQANEPKYFESL-------------------------FGTSTELDFRFAAAFYDADYHEA---KSVDELEEAIDKASY 547 (578)
T ss_dssp --------------------------------------------CCCTHHHHHHTTCEEEEC---CSHHHHHHHHHHHTT
T ss_pred ccccccccchhhhh-------------------------ccCCCCCCHHHHHHHcCCceEec---CCHHHHHHHHHHHHh
Confidence 11000000011000 00001245677899999999866 689999999999987
Q ss_pred cCCCCCEEEEEEEeccCCCcc
Q 004968 354 LGSMGPVLVHVVTEENRRAED 374 (721)
Q Consensus 354 ~~~~~P~lI~v~T~kg~G~~~ 374 (721)
.++|++|||.|.+.....+
T Consensus 548 --~~gp~liev~~~~~~~~~~ 566 (578)
T 3lq1_A 548 --HKGLDIIEVKTNRHENKAN 566 (578)
T ss_dssp --SSSEEEEEEC---------
T ss_pred --CCCCEEEEEECCccccHHH
Confidence 5899999999987654443
|
| >3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=9.5e-12 Score=142.96 Aligned_cols=125 Identities=13% Similarity=0.174 Sum_probs=90.0
Q ss_pred cCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhh
Q 004968 191 AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINA 270 (721)
Q Consensus 191 ~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~ 270 (721)
.|++|+ +|+|+|+|+| + +++|||++|||+|+ |..++|++|+++++|+++||.||+..++ .+.
T Consensus 416 ~g~~G~-l~~A~Gaa~a-~----~~~vv~i~GDGsf~--~~~~eL~ta~~~~lpv~ivv~NN~~~~~----------~~~ 477 (556)
T 3hww_A 416 SGIDGL-LSTAAGVQRA-S----GKPTLAIVGDLSAL--YDLNALALLRQVSAPLVLIVVNNNGGQI----------FSL 477 (556)
T ss_dssp CCSSSH-HHHHHHHHHH-H----CCCEEEEEEHHHHH--HTGGGHHHHTTCSSCEEEEEEESCC----------------
T ss_pred cccccH-HHHHHHHHhc-C----CCcEEEEEccHHhh--hcchhhHhhcccCCCcEEEEEECCCCCc----------ccC
Confidence 467777 9999999998 2 78999999999995 8889999999999999999999885211 110
Q ss_pred hhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHH
Q 004968 271 LSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQE 350 (721)
Q Consensus 271 l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~ 350 (721)
+ ...+ ..+ +.+....-.++...++++||+.+..+ ++.++|.++|++
T Consensus 478 ~----~~~~---~~~------------------------~~~~~~~~~~d~~~~a~a~G~~~~~v---~~~~~l~~al~~ 523 (556)
T 3hww_A 478 L----PTPQ---SER------------------------ERFYLMPQNVHFEHAAAMFELKYHRP---QNWQELETAFAD 523 (556)
T ss_dssp ------------------------------------------CCCCCCCCSHHHHHHTTCEEECC---SSHHHHHHHHHH
T ss_pred C----CCcc---hhH------------------------HHhccCCCCCCHHHHHHHcCCcEEec---CCHHHHHHHHHH
Confidence 0 0000 000 00000011245677899999999865 688999999999
Q ss_pred HHhcCCCCCEEEEEEEecc
Q 004968 351 VASLGSMGPVLVHVVTEEN 369 (721)
Q Consensus 351 a~~~~~~~P~lI~v~T~kg 369 (721)
+++ .++|++|||.|.+.
T Consensus 524 a~~--~~gp~liev~~~~~ 540 (556)
T 3hww_A 524 AWR--TPTTTVIEMVVNDT 540 (556)
T ss_dssp HTT--SSSEEEEEEECCSS
T ss_pred HHh--CCCCEEEEEECCcc
Confidence 987 58999999999653
|
| >2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=9.7e-09 Score=126.87 Aligned_cols=116 Identities=16% Similarity=0.177 Sum_probs=81.8
Q ss_pred CCeEEEEEcCC-CcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHh
Q 004968 214 RECIVTVISNG-TTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAK 292 (721)
Q Consensus 214 ~~~VvaviGDG-al~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~ 292 (721)
++.||++.||| +++ |.+++|.+|..++.|+++||.||+..++..++.+...+.+....+
T Consensus 953 ~~~Vv~i~GDG~~~~--mg~~eL~ta~~~~~~v~iiVlnN~~yg~tg~Q~s~~t~~~~~t~~------------------ 1012 (1231)
T 2c42_A 953 KKSVWIFGGDGWAYD--IGYGGLDHVLASGEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKF------------------ 1012 (1231)
T ss_dssp CCEEEEEEEHHHHHT--TTHHHHHHHHHTTCSCEEEEEECSSBTTTTCBCCTTSCTTCCBBT------------------
T ss_pred CCcEEEEeCcHHHHH--cchHHHHHHHHhCCCeEEEEEECHHHHhHHhhhccCCCCCceeee------------------
Confidence 37899999999 786 778899999999999999999999754433333333222321100
Q ss_pred hhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCC-CCHHHHHHHHHHHHhcCCCCCEEEEEEEec
Q 004968 293 GMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDG-HNIEDLISVLQEVASLGSMGPVLVHVVTEE 368 (721)
Q Consensus 293 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdG-hd~~~l~~al~~a~~~~~~~P~lI~v~T~k 368 (721)
...|. ....++...+++++|+.|+..+.- .+.+++.++|+++.+ .+||++|++.+..
T Consensus 1013 ---~~~g~--------------~~~~~D~~~iA~a~G~~~va~~~v~~~~~~l~~al~eAl~--~~GP~lI~v~~~c 1070 (1231)
T 2c42_A 1013 ---AAAGK--------------RTGKKDLARMVMTYGYVYVATVSMGYSKQQFLKVLKEAES--FPGPSLVIAYATC 1070 (1231)
T ss_dssp ---BTTCC--------------SSCCCCHHHHHHTTSSSEEEEECTTTCHHHHHHHHHHHHH--SSSCEEEEEECCC
T ss_pred ---cccCC--------------CCCchhHHHHHHHCCCCEEEEEeccCCHHHHHHHHHHHHh--cCCCEEEEEeecC
Confidence 00000 001134566889999999866544 599999999999998 5899999999853
|
| >1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* | Back alignment and structure |
|---|
Probab=92.94 E-value=0.11 Score=59.59 Aligned_cols=113 Identities=10% Similarity=0.000 Sum_probs=80.4
Q ss_pred cEeeccccHHHHHHHHHHHHhCCCee-EE-EecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACGGLKP-FC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDI 519 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~G~~p-~~-~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~di 519 (721)
|++- ...|++++.+|.|+|...-+| +| .|+.+.+..++.-| ..+...++|++++...... .|. ..+|.....
T Consensus 45 ~~i~-~~~E~~Aa~~A~GyAr~tgk~~v~~~tsGpG~~N~~~gl-~~A~~~~vPll~Itg~~p~~~~g~--~~~Q~~d~~ 120 (590)
T 1v5e_A 45 KFLQ-VKHEEVGAMAAVMQSKFGGNLGVTVGSGGPGASHLINGL-YDAAMDNIPVVAILGSRPQRELNM--DAFQELNQN 120 (590)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHTTCCCCEEEECTTHHHHTTHHHH-HHHHHHTCCEEEEEEECCGGGTTT--TCTTCCCCH
T ss_pred eEEe-eCCHHHHHHHHHHHHHHHCCCEEEEeCcChHHHHHHHHH-HHHHhcCCCEEEEcCCCCcccCCC--CcccccCHH
Confidence 5555 599999999999999985444 33 35778777777666 4556779999988743333 232 235555556
Q ss_pred HHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 520 TFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 520 a~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
.+++.+-.+ .+.+.+++++..++..|+.. ..+||+| +|...
T Consensus 121 ~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l-iP~dv 165 (590)
T 1v5e_A 121 PMYDHIAVY-NRRVAYAEQLPKLVDEAARMAIAKRGVAVLE-VPGDF 165 (590)
T ss_dssp HHHHTTCSE-EEECCSGGGHHHHHHHHHHHHHHTTSEEEEE-EETTG
T ss_pred HHHHhhccE-EEEeCCHHHHHHHHHHHHHHHhcCCCceEEE-Eccch
Confidence 788888776 67778888888888877763 2379999 99875
|
| >2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* | Back alignment and structure |
|---|
Probab=92.46 E-value=0.75 Score=52.22 Aligned_cols=149 Identities=13% Similarity=0.103 Sum_probs=97.1
Q ss_pred ccHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh---HHHHHhCCCcEeeccccHHHHHHHHHHHHhC-CCeeEE-EecH
Q 004968 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL---QLFQEKFPERYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPS 475 (721)
Q Consensus 401 ~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l---~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~-G~~p~~-~tys 475 (721)
.+..+++.+.|.+..- +.++. .+|+..+ +.+.+. +=|++.+ ..|++++.+|.|+|.. |...+| .|+.
T Consensus 4 ~~~a~~l~~~L~~~GV--~~vfg----~PG~~~~~l~~al~~~-~i~~i~~-~~E~~Aa~~A~Gyar~tg~p~v~~~TsG 75 (563)
T 2uz1_A 4 ITGGELVVRTLIKAGV--EHLFG----LHGAHIDTIFQACLDH-DVPIIDT-RHEAAAGHAAEGYARAGAKLGVALVTAG 75 (563)
T ss_dssp EEHHHHHHHHHHHHTC--CCEEE----CCCGGGHHHHHHHHHH-TCCEEEC-SSHHHHHHHHHHHHHHHTSCEEEEECTT
T ss_pred cCHHHHHHHHHHHCCC--CEEEE----CCCCchHHHHHHHHhc-CCcEEee-CCHHHHHHHHHHHHHHhCCCEEEEEccC
Confidence 3456666666655431 23333 3344332 445443 4577774 9999999999999997 544343 3587
Q ss_pred hhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCc-HHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHh---
Q 004968 476 AFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCG-AFDITFMSCLPNMIVMAPSDEDELVDMVATVASI--- 549 (721)
Q Consensus 476 ~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~-~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~--- 549 (721)
+....++..| ..+...++|++++...... .|. ..||. .....+++.+-.+ .+...+++++...+..|+..
T Consensus 76 pG~~N~~~~l-~~A~~~~~Pll~itg~~~~~~~~~--~~~Q~~~d~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~ 151 (563)
T 2uz1_A 76 GGFTNAVTPI-ANAWLDRTPVLFLTGSGALRDDET--NTLQAGIDQVAMAAPITKW-AHRVMATEHIPRLVMQAIRAALS 151 (563)
T ss_dssp HHHHTTHHHH-HHHHHHTCCEEEEEEECCGGGTTS--CCTTCCCCHHHHHGGGCSE-EEECCCGGGHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHH-HHHHhcCCCEEEEeCCCCcccCCc--hhhhhhccHHHHhhhhhce-EEEcCCHHHHHHHHHHHHHHhcC
Confidence 7777667666 3566779999988744333 232 23666 6666788887766 45556777777777777652
Q ss_pred -CCCCEEEEecCC
Q 004968 550 -DDRPVCFRYPRG 561 (721)
Q Consensus 550 -~~~P~~ir~~r~ 561 (721)
..+|++|-+|..
T Consensus 152 ~~~GPV~l~iP~d 164 (563)
T 2uz1_A 152 APRGPVLLDLPWD 164 (563)
T ss_dssp SSCCCEEEEEEHH
T ss_pred CCCceEEEEeCHH
Confidence 348999998876
|
| >1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* | Back alignment and structure |
|---|
Probab=92.09 E-value=0.68 Score=52.63 Aligned_cols=146 Identities=11% Similarity=0.056 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEecCCCCccCh---HHHHHhCCC-cEeeccccHHHHHHHHHHHHhC-CCeeEE-EecHh
Q 004968 403 YDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL---QLFQEKFPE-RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSA 476 (721)
Q Consensus 403 ~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l---~~f~~~fp~-R~~d~GIaE~~~v~~AaGlA~~-G~~p~~-~tys~ 476 (721)
-.+++.+.|.+. .-+-+... +|+.-+ +.+.+ ++ |++.+ ..|++++.+|.|+|.. |...+| .|+.+
T Consensus 13 ~a~~l~~~L~~~---GV~~vfg~---PG~~~~~l~~al~~--~~i~~v~~-~~E~~Aa~~A~Gyar~tg~p~v~~~TsGp 83 (566)
T 1ozh_A 13 GADLVVSQLEAQ---GVRQVFGI---PGAKIDKVFDSLLD--SSIRIIPV-RHEANAAFMAAAVGRITGKAGVALVTSGP 83 (566)
T ss_dssp HHHHHHHHHHHH---TCCEEEEE---CCTTTHHHHHHGGG--SSSEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECSTH
T ss_pred HHHHHHHHHHHC---CCCEEEEc---CCCchHHHHHHHHh--CCCcEEEe-CCHHHHHHHHHHHHHHHCCCEEEEEccCh
Confidence 356666666554 23333332 233322 33433 33 67765 9999999999999997 544343 45887
Q ss_pred hHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHh----C
Q 004968 477 FLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI----D 550 (721)
Q Consensus 477 Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~ 550 (721)
....++.-| ..+...++|++++...... .|. ..||......+++.+..+. +...+++++...+..|+.. .
T Consensus 84 G~~N~~~~l-~~A~~~~vPll~itg~~~~~~~~~--~~~Q~~d~~~~~~~~tk~~-~~v~~~~~~~~~i~~A~~~A~~~r 159 (566)
T 1ozh_A 84 GCSNLITGM-ATANSEGDPVVALGGAVKRADKAK--QVHQSMDTVAMFSPVTKYA-IEVTAPDALAEVVSNAFRAAEQGR 159 (566)
T ss_dssp HHHTTHHHH-HHHHHHTCCEEEEEEECCTTTC--------CCCHHHHHGGGCSEE-EECCSGGGHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHH-HHHHhcCCCEEEEeCCCccccCCC--CcccccCHHHHHHHHhheE-EEcCCHHHHHHHHHHHHHHHhcCC
Confidence 776666655 4556779999888743332 232 3467666678888877664 5556777777777776652 2
Q ss_pred CCCEEEEecCC
Q 004968 551 DRPVCFRYPRG 561 (721)
Q Consensus 551 ~~P~~ir~~r~ 561 (721)
.+||+|-+|..
T Consensus 160 ~GPV~l~iP~d 170 (566)
T 1ozh_A 160 PGSAFVSLPQD 170 (566)
T ss_dssp CCEEEEEEEHH
T ss_pred CCeEEEEeChh
Confidence 58999998876
|
| >1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A* | Back alignment and structure |
|---|
Probab=92.07 E-value=0.69 Score=52.86 Aligned_cols=149 Identities=15% Similarity=0.141 Sum_probs=95.5
Q ss_pred cHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh---HHHHHhCCC-cEeeccccHHHHHHHHHHHHhC-CCeeEE-EecH
Q 004968 402 TYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL---QLFQEKFPE-RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPS 475 (721)
Q Consensus 402 ~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l---~~f~~~fp~-R~~d~GIaE~~~v~~AaGlA~~-G~~p~~-~tys 475 (721)
+..+++.+.|.+. .-+-+.. .+|+.-+ +.+.+ .++ |++. ...|++++.+|.|+|.. |...+| .|+.
T Consensus 13 ~~a~~l~~~L~~~---GV~~vfg---~PG~~~~~l~~al~~-~~~i~~i~-~~~E~~Aa~~A~Gyar~tg~p~v~~~TsG 84 (590)
T 1ybh_A 13 KGADILVEALERQ---GVETVFA---YPGGASMEIHQALTR-SSSIRNVL-PRHEQGGVFAAEGYARSSGKPGICIATSG 84 (590)
T ss_dssp EHHHHHHHHHHTT---TCCEEEE---CCCGGGHHHHHHHHH-CSSCEECC-CSSHHHHHHHHHHHHHHHSSCEEEEECTT
T ss_pred cHHHHHHHHHHHc---CCCEEEE---cCCCchHHHHHHHhc-cCCccEEe-eCCHHHHHHHHHHHHHHHCCCEEEEeccC
Confidence 4455555555432 2333333 3344333 34433 343 6665 48999999999999997 544444 4587
Q ss_pred hhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHh----
Q 004968 476 AFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI---- 549 (721)
Q Consensus 476 ~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~---- 549 (721)
+....++--| ..+...++||+++...... .|. ..+|......+++.+-.+ .+...+++++..++..|+..
T Consensus 85 pG~~N~~~gv-~~A~~~~vPll~itg~~~~~~~g~--~~~Q~~d~~~~~~~~~k~-~~~v~~~~~i~~~l~~A~~~a~~~ 160 (590)
T 1ybh_A 85 PGATNLVSGL-ADALLDSVPLVAITGQVPRRMIGT--DAFQETPIVEVTRSITKH-NYLVMDVEDIPRIIEEAFFLATSG 160 (590)
T ss_dssp HHHHTTHHHH-HHHHHHTCCEEEEEEECCGGGTTT--TCTTCCCHHHHHGGGSSE-EEECCCGGGHHHHHHHHHHHHHSS
T ss_pred chHHHHHHHH-HHHHhhCCCEEEEeCcCCccccCC--CcccccCHHHHHHHHhCe-EEecCCHHHHHHHHHHHHHHHhhC
Confidence 7776666655 4556789999888743322 233 235655666788888776 45567788899999888864
Q ss_pred CCCCEEEEecCCC
Q 004968 550 DDRPVCFRYPRGA 562 (721)
Q Consensus 550 ~~~P~~ir~~r~~ 562 (721)
..+||+|-+|...
T Consensus 161 ~~GPV~l~iP~dv 173 (590)
T 1ybh_A 161 RPGPVLVDVPKDI 173 (590)
T ss_dssp SCCEEEEEEEHHH
T ss_pred CCceEEEEeCcch
Confidence 2479999888753
|
| >2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus} | Back alignment and structure |
|---|
Probab=92.01 E-value=1.6 Score=49.52 Aligned_cols=150 Identities=13% Similarity=0.091 Sum_probs=89.9
Q ss_pred cHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh---HHHHHhCCC-cEeeccccHHHHHHHHHHHHhC-CCeeEE-EecH
Q 004968 402 TYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL---QLFQEKFPE-RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPS 475 (721)
Q Consensus 402 ~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l---~~f~~~fp~-R~~d~GIaE~~~v~~AaGlA~~-G~~p~~-~tys 475 (721)
+..+++.+.|.+. .-+-+.. ++|+.-+ +.+.+ .++ |++. ...|++++.+|.|+|.. | ..+| .|+.
T Consensus 4 ~~a~~l~~~L~~~---GV~~vfg---~PG~~~~~l~~al~~-~~~i~~v~-~~~E~~Aa~~A~Gyar~tg-~~v~~~TsG 74 (566)
T 2vbi_A 4 TVGMYLAERLVQI---GLKHHFA---VAGDYNLVLLDQLLL-NKDMKQIY-CCNELNCGFSAEGYARSNG-AAAAVVTFS 74 (566)
T ss_dssp BHHHHHHHHHHHH---TCSEEEE---CCCTTTHHHHHHHHT-CTTSEEEE-CSSHHHHHHHHHHHHHHHS-CEEEEECTT
T ss_pred CHHHHHHHHHHHc---CCCEEEe---CCCCccHHHHHHHhc-CCCCeEEe-eCcHHHHHHHHHHHHhhcC-CeEEEEeCC
Confidence 4556666666554 2333333 3344333 33433 233 6766 49999999999999986 8 5444 4588
Q ss_pred hhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCc------HHHHHHHccCCCcEEEeeCCHHHHHHHHHHHH
Q 004968 476 AFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCG------AFDITFMSCLPNMIVMAPSDEDELVDMVATVA 547 (721)
Q Consensus 476 ~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~------~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~ 547 (721)
+....++.-| ..+...++|++++...... .+.+-..||. .....+++.+-.+. +.+.+++++...+..|+
T Consensus 75 pG~~N~~~gi-a~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~~-~~v~~~~~~~~~l~~A~ 152 (566)
T 2vbi_A 75 VGAISAMNAL-GGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDYSYQLEMARQVTCAA-ESITDAHSAPAKIDHVI 152 (566)
T ss_dssp TTHHHHHHHH-HHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCTHHHHHHHTTCSEE-EEECSSSSHHHHHHHHH
T ss_pred CCHHHHHHHH-HHHHhhCCCEEEEECCCChHHhccCceeeeeccCcchHHHHHHHhhhEeEE-EEeCCHHHHHHHHHHHH
Confidence 8777777666 3567789999988743333 2332223431 13467888776653 33344454444444444
Q ss_pred H---hCCCCEEEEecCCC
Q 004968 548 S---IDDRPVCFRYPRGA 562 (721)
Q Consensus 548 ~---~~~~P~~ir~~r~~ 562 (721)
. ...+|++|-+|...
T Consensus 153 ~~a~~~~GPV~l~iP~d~ 170 (566)
T 2vbi_A 153 RTALRERKPAYLDIACNI 170 (566)
T ss_dssp HHHHHHTCCEEEEEETTT
T ss_pred HHHHhCCCCEEEEechhh
Confidence 3 12499999998865
|
| >2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A* | Back alignment and structure |
|---|
Probab=91.95 E-value=1.6 Score=49.46 Aligned_cols=115 Identities=13% Similarity=0.136 Sum_probs=76.8
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEE-EecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCc----
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCG---- 515 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~-~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~---- 515 (721)
|++-+ ..|++++.+|.|+|.. | ..+| .|+.+....++.-| ..+...+.||+++...... .+.+...||.
T Consensus 43 ~~i~~-~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~~~gi-a~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~ 119 (568)
T 2wvg_A 43 EQVYC-CNELNCGFSAEGYARAKG-AAAAVVTYSVGALSAFDAI-GGAYAENLPVILISGAPNNNDHAAGHVLHHALGKT 119 (568)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHS-CEEEEECTTTTHHHHHHHH-HHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSS
T ss_pred eEecc-CcHHHHHHHHHHHHHhhC-CeEEEEeCCCCHHHHHHHH-HHHhhhCCCEEEEeCCCChhHhccCcceeeecccc
Confidence 77765 9999999999999976 8 4333 45888777777666 4567889999988743333 2333233442
Q ss_pred --HHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHh---CCCCEEEEecCCC
Q 004968 516 --AFDITFMSCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYPRGA 562 (721)
Q Consensus 516 --~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~---~~~P~~ir~~r~~ 562 (721)
.....+++.+-.+. +...+++++...+..|+.. ..+|++|-+|...
T Consensus 120 ~~~d~~~~~~~~tk~~-~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~dv 170 (568)
T 2wvg_A 120 DYHYQLEMAKNITAAA-EAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNI 170 (568)
T ss_dssp CCCHHHHHHTTSCSCE-EEECSGGGHHHHHHHHHHHHHHHTCCEEEEEEGGG
T ss_pred chHHHHHHHHhhEeEE-EEeCCHHHHHHHHHHHHHHHHhCCCCEEEEechhH
Confidence 13467888877663 4445666666666555441 2499999998764
|
| >2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.24 E-value=1.3 Score=50.94 Aligned_cols=149 Identities=8% Similarity=-0.029 Sum_probs=94.6
Q ss_pred cHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh---HHHHHhCCC-cEeeccccHHHHHHHHHHHHhC-CCeeEE--Eec
Q 004968 402 TYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL---QLFQEKFPE-RYFDVGMAEQHAVTFSAGLACG-GLKPFC--IIP 474 (721)
Q Consensus 402 ~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l---~~f~~~fp~-R~~d~GIaE~~~v~~AaGlA~~-G~~p~~--~ty 474 (721)
+..+++.+.|.+ ..=+.++. .+|+.-+ +.+.+ .++ |++- ...|++++.+|.|+|.. |-+|.+ .|+
T Consensus 28 ~~a~~l~~~L~~---~GV~~vfg---~PG~~~~~l~~al~~-~~~i~~i~-~~~E~~Aa~~A~GyAr~tgg~~~v~~~Ts 99 (616)
T 2pan_A 28 RAVDAAMYVLEK---EGITTAFG---VPGAAINPFYSAMRK-HGGIRHIL-ARHVEGASHMAEGYTRATAGNIGVCLGTS 99 (616)
T ss_dssp EHHHHHHHHHHH---TTCCEEEE---CCCGGGHHHHHHHHH-HCCCEEEE-CSSHHHHHHHHHHHHHHSTTCCEEEEECS
T ss_pred cHHHHHHHHHHH---CCCCEEEE---CCCCccHHHHHHHHh-cCCCcEEe-eCCHHHHHHHHHHHHHhcCCCceEEEeCC
Confidence 445566555543 23343433 3344332 44443 344 5655 59999999999999997 455543 468
Q ss_pred HhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHh---
Q 004968 475 SAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI--- 549 (721)
Q Consensus 475 s~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~--- 549 (721)
.+....++..| ..+.+.+.|++++...... .+. | .+|......+++.+-.+.. ...+++++..+++.|+..
T Consensus 100 GpG~~N~~~~l-~~A~~~~vPlvvItg~~p~~~~~~-~-~~Q~~d~~~~~~~~tk~~~-~v~~~~~i~~~l~~A~~~A~~ 175 (616)
T 2pan_A 100 GPAGTDMITAL-YSASADSIPILCITGQAPRARLHK-E-DFQAVDIEAIAKPVSKMAV-TVREAALVPRVLQQAFHLMRS 175 (616)
T ss_dssp THHHHTSHHHH-HHHHHTTCCEEEEEEECCGGGTTT-T-CTTCCCHHHHHGGGSSEEE-ECCSGGGHHHHHHHHHHHHHS
T ss_pred CchHHHHHHHH-HHHHhcCCCEEEEecCCcccccCc-c-cccccCHHHHHHHHHHhhc-ccCCHHHHHHHHHHHHHHHhc
Confidence 88777677766 4667789998888733222 332 2 2444444578887776644 446678888888888764
Q ss_pred -CCCCEEEEecCCC
Q 004968 550 -DDRPVCFRYPRGA 562 (721)
Q Consensus 550 -~~~P~~ir~~r~~ 562 (721)
..+||+|-+|...
T Consensus 176 ~r~GPV~l~iP~d~ 189 (616)
T 2pan_A 176 GRPGPVLVDLPFDV 189 (616)
T ss_dssp SSCCCEEEEEEHHH
T ss_pred CCCceEEEEcchhh
Confidence 2579999887653
|
| >2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A* | Back alignment and structure |
|---|
Probab=91.18 E-value=1.2 Score=50.52 Aligned_cols=154 Identities=14% Similarity=0.077 Sum_probs=89.2
Q ss_pred cccHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh---HHHHHhCCCcEeeccccHHHHHHHHHHHHhC-CCeeEE-Eec
Q 004968 400 SRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL---QLFQEKFPERYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIP 474 (721)
Q Consensus 400 ~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l---~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~-G~~p~~-~ty 474 (721)
..+..+++.+.|.+.. -+-++. .+|+.-+ +.+.+. +.+.+=....|++++.+|.|+|.. |...+| .|+
T Consensus 20 ~~~~a~~lv~~L~~~G---V~~vfg---~PG~~~~~l~~al~~~-~~~~~i~~~~E~~Aa~~A~GyAr~tgkp~v~~~Ts 92 (565)
T 2nxw_A 20 HMKLAEALLRALKDRG---AQAMFG---IPGDFALPFFKVAEET-QILPLHTLSHEPAVGFAADAAARYSSTLGVAAVTY 92 (565)
T ss_dssp CCBHHHHHHHHHHHTT---CCCEEE---CCCGGGHHHHHHHHHH-CSSCEEECSSHHHHHHHHHHHHHHHTSCEEEEECT
T ss_pred CcCHHHHHHHHHHHcC---CCEEEE---CCCcchHHHHHHHHhC-CCcEEEecCcHHHHHHHHHHHHHHhCCCeEEEECC
Confidence 3567777777766532 232332 2344322 444432 444444569999999999999997 544333 458
Q ss_pred HhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCC-cCc--HH-HHHHHccCCCcEEEeeCCHHHHHHHHHHHHH
Q 004968 475 SAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPT-QCG--AF-DITFMSCLPNMIVMAPSDEDELVDMVATVAS 548 (721)
Q Consensus 475 s~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~T-H~~--~~-dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~ 548 (721)
.+....++.-| ..+...++|++++...... .|.+... |+. .. ...+++.+-.+.. ...+++++...+..|+.
T Consensus 93 GpG~~N~~~gv-~~A~~~~vPll~itg~~~~~~~~~~~~~~~~~q~~d~q~~~~~~~~k~~~-~v~~~~~~~~~i~~A~~ 170 (565)
T 2nxw_A 93 GAGAFNMVNAV-AGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDTQFQVFKEITVAQA-RLDDPAKAPAEIARVLG 170 (565)
T ss_dssp THHHHTTHHHH-HHHHHTTCCEEEEEEECCTTCC--CCCC-------CHHHHHHTTSCSCEE-ECCCTTTHHHHHHHHHH
T ss_pred CCCHHHHHHHH-HHHHhhCCCEEEEeCCCChhhhccCcceeeeccchhhHHHHHHhhheEEE-EeCCHHHHHHHHHHHHH
Confidence 77776666655 4566789999988743322 3433333 332 22 3578887766543 33444444444444443
Q ss_pred h---CCCCEEEEecCCC
Q 004968 549 I---DDRPVCFRYPRGA 562 (721)
Q Consensus 549 ~---~~~P~~ir~~r~~ 562 (721)
. ..+|++|-+|+..
T Consensus 171 ~A~~~~GPV~l~iP~Dv 187 (565)
T 2nxw_A 171 AARAQSRPVYLEIPRNM 187 (565)
T ss_dssp HHHHHTCCEEEEEEGGG
T ss_pred HHHhCCCCEEEECChhh
Confidence 1 3689999999654
|
| >2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* | Back alignment and structure |
|---|
Probab=91.04 E-value=0.45 Score=54.21 Aligned_cols=149 Identities=11% Similarity=0.014 Sum_probs=96.1
Q ss_pred ccHHHHHHHHHHHHHHcCCCeEEEecCCCCcc-Ch---HHHHHhCCCcEeeccccHHHHHHHHHHHHhCCCee-E-EEec
Q 004968 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEMDL-SL---QLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKP-F-CIIP 474 (721)
Q Consensus 401 ~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~-~l---~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~G~~p-~-~~ty 474 (721)
.+..+++.+.|.+. .=+-+.. .+|+. -+ +.+. +=|++- ...|++++-+|-|+|...-+| + +.|+
T Consensus 12 ~~~a~~l~~~L~~~---GV~~vfg---~PG~~~~~~l~~al~---~i~~i~-~~~E~~Aa~~A~Gyar~tg~p~v~~~Ts 81 (573)
T 2iht_A 12 PTAAHALLSRLRDH---GVGKVFG---VVGREAASILFDEVE---GIDFVL-TRHEFTAGVAADVLARITGRPQACWATL 81 (573)
T ss_dssp CCHHHHHHHHHHHT---TCCEEEE---CCCGGGGTCCSCSST---TCEEEE-CSSHHHHHHHHHHHHHHHCSCEEEEECT
T ss_pred ccHHHHHHHHHHHC---CCCEEEE---ecCCcchhHHHHHHc---CCeEEe-eCCHHHHHHHHHHHHHHHCCCEEEEEcc
Confidence 45566666666543 2333333 22333 22 3333 346665 489999999999999974444 3 3468
Q ss_pred HhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHh---
Q 004968 475 SAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI--- 549 (721)
Q Consensus 475 s~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~--- 549 (721)
.+....++.-| ..+...+.|++++...... .|.. ..||......+++.+..+. +...+++++...+..|+..
T Consensus 82 GpG~~N~~~~v-~~A~~~~~Pll~itg~~~~~~~~~~-~~~Q~~d~~~~~~~~~k~~-~~v~~~~~~~~~i~~A~~~A~~ 158 (573)
T 2iht_A 82 GPGMTNLSTGI-ATSVLDRSPVIALAAQSESHDIFPN-DTHQCLDSVAIVAPMSKYA-VELQRPHEITDLVDSAVNAAMT 158 (573)
T ss_dssp THHHHHHHHHH-HHHHHHTCCEEEEEEESCGGGCCTT-TSTTCCCHHHHHGGGSSEE-EECCSGGGHHHHHHHHHHHHTB
T ss_pred CchHHHHHHHH-HHHHhhCCCEEEEcccCcccccCCc-CccccCCHHHHHHhHhhEE-EEcCCHHHHHHHHHHHHHHHhc
Confidence 88877777766 4667789999988743332 2321 3577777778898887664 4556777777777777753
Q ss_pred -CCCCEEEEecCCC
Q 004968 550 -DDRPVCFRYPRGA 562 (721)
Q Consensus 550 -~~~P~~ir~~r~~ 562 (721)
..+||+|-+|...
T Consensus 159 ~~~GPV~l~iP~dv 172 (573)
T 2iht_A 159 EPVGPSFISLPVDL 172 (573)
T ss_dssp SSCCCEEEEEEHHH
T ss_pred CCCceEEEEecchH
Confidence 2479999888654
|
| >4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* | Back alignment and structure |
|---|
Probab=91.03 E-value=1.3 Score=50.62 Aligned_cols=151 Identities=13% Similarity=0.065 Sum_probs=89.4
Q ss_pred ccHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh---HHHHHhCCC-cEeeccccHHHHHHHHHHHHhC-CCeeEE-Eec
Q 004968 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL---QLFQEKFPE-RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIP 474 (721)
Q Consensus 401 ~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l---~~f~~~fp~-R~~d~GIaE~~~v~~AaGlA~~-G~~p~~-~ty 474 (721)
.+..+++.+.|.+. .-+-+.. ++|+.-+ +.+.+..++ |++-+ .-|++++-+|.|.|.. |...+| .|+
T Consensus 11 ~~~a~~l~~~L~~~---GV~~vfg---~PG~~~~~l~dal~~~~~~i~~i~~-~hE~~Aa~aA~GyAr~tg~~gv~~~Ts 83 (603)
T 4feg_A 11 ILAGAAVIKVLEAW---GVDHLYG---IPGGSINSIMDALSAERDRIHYIQV-RHEEVGAMAAAADAKLTGKIGVCFGSA 83 (603)
T ss_dssp EEHHHHHHHHHHHT---TCCEEEE---CCCGGGHHHHHHHHHTTTTSEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECT
T ss_pred eeHHHHHHHHHHHC---CCCEEEE---eCCCchHHHHHHHHhccCCCeEEEe-cChHHHHHHHHHHHHHhCCceEEEecC
Confidence 45556666665443 3333332 3344332 444443233 77764 8999999999999986 544444 468
Q ss_pred HhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHH---h
Q 004968 475 SAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVAS---I 549 (721)
Q Consensus 475 s~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~---~ 549 (721)
.+....++.-| ..+...+.||+++...... .|.+ .+|......+++.+-.+.. ...+++++...+..|+. .
T Consensus 84 GpG~~N~~~gi-a~A~~~~vPvl~itG~~~~~~~~~~--~~Q~~d~~~~~~~~tk~~~-~v~~~~~~~~~i~~A~~~A~~ 159 (603)
T 4feg_A 84 GPGGTHLMNGL-YDAREDHVPVLALIGQFGTTGMNMD--TFQEMNENPIYADVADYNV-TAVNAATLPHVIDEAIRRAYA 159 (603)
T ss_dssp THHHHTTHHHH-HHHHHTTCCEEEEEEECCTTTTTSC--CTTCCCCGGGGTTTCSEEE-ECCCSTTHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHH-HHHHHcCCCEEEEecCCcccccCCC--ccccccHHHHhhhhceEEE-EcCCHHHHHHHHHHHHHHHhc
Confidence 88777666655 5667889999988732222 2332 3444444467777665533 33344445444444443 1
Q ss_pred CCCCEEEEecCCC
Q 004968 550 DDRPVCFRYPRGA 562 (721)
Q Consensus 550 ~~~P~~ir~~r~~ 562 (721)
..+|++|-+|...
T Consensus 160 ~~GPV~l~iP~dv 172 (603)
T 4feg_A 160 HQGVAVVQIPVDL 172 (603)
T ss_dssp HTSEEEEEEETTG
T ss_pred CCCCEEEEeChhh
Confidence 4689999998764
|
| >1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* | Back alignment and structure |
|---|
Probab=90.99 E-value=1.8 Score=50.38 Aligned_cols=149 Identities=15% Similarity=0.107 Sum_probs=95.4
Q ss_pred ccHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh---HHHHHhCCC-cEeeccccHHHHHHHHHHHHhC-CCeeEE-Eec
Q 004968 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL---QLFQEKFPE-RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIP 474 (721)
Q Consensus 401 ~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l---~~f~~~fp~-R~~d~GIaE~~~v~~AaGlA~~-G~~p~~-~ty 474 (721)
.+..+++.+.|.+. .=+.++. .+|+.-+ +.+.+ .++ |++- ...|++++.+|.|+|.. |...+| .|+
T Consensus 82 ~~~a~~lv~~L~~~---GV~~vFg---~PG~~~~pl~dal~~-~~~i~~v~-~~hE~~Aa~aAdGyAr~tGkpgvv~~Ts 153 (677)
T 1t9b_A 82 LTGGQIFNEMMSRQ---NVDTVFG---YPGGAILPVYDAIHN-SDKFNFVL-PKHEQGAGHMAEGYARASGKPGVVLVTS 153 (677)
T ss_dssp CBHHHHHHHHHHHT---TCCEEEE---CCCGGGHHHHHHTTT-CSSSEEEC-CSSHHHHHHHHHHHHHHHSSCEEEEECS
T ss_pred CCHHHHHHHHHHHc---CCCEEEE---ecCccHHHHHHHHHh-CCCCeEEE-eCChHHHHHHHHHHHHHHCCCEEEEECC
Confidence 45666776666543 3333333 3344433 22222 233 6665 49999999999999997 644343 468
Q ss_pred HhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHh---
Q 004968 475 SAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI--- 549 (721)
Q Consensus 475 s~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~--- 549 (721)
.+....++..| ..+...++||+++...... .|. ..+|......+++.+-.+.+ ...+++++...+..|+..
T Consensus 154 GpG~~N~~~gi-a~A~~d~vPllvItG~~~~~~~g~--~a~Q~~Dq~~i~~~~tk~~~-~v~~~~~i~~~i~~A~~~A~~ 229 (677)
T 1t9b_A 154 GPGATNVVTPM-ADAFADGIPMVVFTGQVPTSAIGT--DAFQEADVVGISRSCTKWNV-MVKSVEELPLRINEAFEIATS 229 (677)
T ss_dssp THHHHTTHHHH-HHHHHHTCCEEEEEEECCTTTTTS--CCTTCCCHHHHTGGGSSEEE-ECCSGGGHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHHH-HHHHHcCCCEEEEeCCCChhhcCC--CCccccCHHHHhhhheeEEE-EcCCHHHHHHHHHHHHHHHhh
Confidence 88777666665 4556779999988743322 232 23566666678887776644 446788888888888763
Q ss_pred -CCCCEEEEecCC
Q 004968 550 -DDRPVCFRYPRG 561 (721)
Q Consensus 550 -~~~P~~ir~~r~ 561 (721)
..+||+|-+|..
T Consensus 230 grpGPV~l~lP~D 242 (677)
T 1t9b_A 230 GRPGPVLVDLPKD 242 (677)
T ss_dssp SSCCEEEEEEEHH
T ss_pred CCCceEEEEcCHH
Confidence 357999998854
|
| >3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* | Back alignment and structure |
|---|
Probab=90.75 E-value=2.1 Score=48.34 Aligned_cols=122 Identities=11% Similarity=0.058 Sum_probs=80.9
Q ss_pred HHHHHhCCC-cEeeccccHHHHHHHHHHHHhC-CCeeEE-EecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCC
Q 004968 435 QLFQEKFPE-RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSD 509 (721)
Q Consensus 435 ~~f~~~fp~-R~~d~GIaE~~~v~~AaGlA~~-G~~p~~-~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~d 509 (721)
+.+.+. |+ |++.+ ..|++++-+|-|+|.. |...+| .|+.+....++.-| ..+...+.||+++...... .|.
T Consensus 34 dal~~~-~~i~~i~~-~~E~~Aa~~A~GyAr~tg~~~v~~~TsGpG~~N~~~gi-~~A~~~~vPvl~itg~~~~~~~~~- 109 (549)
T 3eya_A 34 DSLNRM-GTIEWMST-RHEEVAAFAAGAEAQLSGELAVCAGSCGPGNLHLINGL-FDCHRNHVPVLAIAAHIPSSEIGS- 109 (549)
T ss_dssp HHHHHH-CSSEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTTHHHH-HHHHHTTCCEEEEEEESCGGGTTS-
T ss_pred HHHHhc-CCCeEEEe-CChHHHHHHHHHHHHHhCCCEEEEeCCCCcHhhhHHHH-HHHHhhCCCEEEEeCCCchhhcCC-
Confidence 444443 44 67764 8999999999999987 544443 46888777666655 4667789999988733222 232
Q ss_pred CCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHH---hCCCCEEEEecCCC
Q 004968 510 GPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVAS---IDDRPVCFRYPRGA 562 (721)
Q Consensus 510 G~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~---~~~~P~~ir~~r~~ 562 (721)
..+|......+++.+-.+. ....+++++...+..|+. ...+|++|-+|...
T Consensus 110 -~~~Q~~d~~~~~~~~tk~~-~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~dv 163 (549)
T 3eya_A 110 -GYFQETHPQELFRECSHYC-ELVSSPEQIPQVLAIAMRKAVLNRGVSVVVLPGDV 163 (549)
T ss_dssp -CCTTCCCHHHHTSTTCSEE-EECCSGGGHHHHHHHHHHHHHHTTSEEEEEEEHHH
T ss_pred -CCCCccCHHHHHhhhhheE-EEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChhH
Confidence 2355555667888777654 445566666666666654 24689999888643
|
| >2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A* | Back alignment and structure |
|---|
Probab=89.97 E-value=1.3 Score=50.41 Aligned_cols=150 Identities=13% Similarity=0.089 Sum_probs=90.3
Q ss_pred ccHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh---HHHHHhCCC-cEeeccccHHHHHHHHHHHHhC-CCeeEE-Eec
Q 004968 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL---QLFQEKFPE-RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIP 474 (721)
Q Consensus 401 ~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l---~~f~~~fp~-R~~d~GIaE~~~v~~AaGlA~~-G~~p~~-~ty 474 (721)
.+..+++.+.|.+. .-+.+.. .+|+..+ +.+.+ .++ |++- ...|++++.+|.|+|.. | ..+| .|+
T Consensus 25 ~~~a~~l~~~L~~~---GV~~vfg---~PG~~~~~l~~al~~-~~~i~~i~-~~~E~~A~~~A~GyAr~tG-~~v~~~ts 95 (570)
T 2vbf_A 25 YTVGDYLLDRLHEL---GIEEIFG---VPGDYNLQFLDQIIS-REDMKWIG-NANELNASYMADGYARTKK-AAAFLTTF 95 (570)
T ss_dssp CBHHHHHHHHHHHT---TCCEEEE---CCCGGGHHHHHHHHH-CSSCEEEE-CSSHHHHHHHHHHHHHHHS-CEEEEEET
T ss_pred CCHHHHHHHHHHHc---CCCEEEE---CCCcchHHHHHHHhc-CCCCeEEC-cCcHHHHHHHHHHHHHHhC-CeEEEEcC
Confidence 45566666666543 3333333 3344333 33433 344 5555 59999999999999954 8 4444 458
Q ss_pred HhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcH------HHHHHHccCCCcEEEeeCCHHHHHHHHHHH
Q 004968 475 SAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGA------FDITFMSCLPNMIVMAPSDEDELVDMVATV 546 (721)
Q Consensus 475 s~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~------~dia~~~~iPnl~V~~Psd~~E~~~~l~~a 546 (721)
.+....++.-| ..+...++|++++...... .+.+...||.. +...+++.+..+....+ + +++...+..|
T Consensus 96 GpG~~N~~~gi-~~A~~~~vPlv~itg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~-~-~~~~~~l~~A 172 (570)
T 2vbf_A 96 GVGELSAINGL-AGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADGDFKHFMKMHEPVTAARTLLT-A-ENATYEIDRV 172 (570)
T ss_dssp THHHHHHHHHH-HHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCCHHHHHTGGGCSEEEECC-T-TTHHHHHHHH
T ss_pred CCCHHHHHHHH-HHHhhhCCCEEEEeCCCCHHHhhccccceeeccccchHHHHHHhhhhEEEEEEEC-c-ccHHHHHHHH
Confidence 88877777766 4667789999988743322 23233344411 13567787776654444 3 5666665555
Q ss_pred HHh---CCCCEEEEecCCC
Q 004968 547 ASI---DDRPVCFRYPRGA 562 (721)
Q Consensus 547 ~~~---~~~P~~ir~~r~~ 562 (721)
++. ..+||+|-+|...
T Consensus 173 ~~~A~~~~GPV~l~iP~d~ 191 (570)
T 2vbf_A 173 LSQLLKERKPVYINLPVDV 191 (570)
T ss_dssp HHHHHHHCCCEEEEEEHHH
T ss_pred HHHHhhCCCCEEEEcchhh
Confidence 542 3489999888653
|
| >3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A* | Back alignment and structure |
|---|
Probab=87.72 E-value=3.5 Score=46.58 Aligned_cols=147 Identities=9% Similarity=0.053 Sum_probs=92.4
Q ss_pred HHHHHHHHHHcC-CCeEEEecCCCCccCh---HHHHHhCCC-cEeeccccHHHHHHHHHHHHhC-CCeeEE-EecHhhHH
Q 004968 407 FIEALVMEAEKD-KDIVVVHAGMEMDLSL---QLFQEKFPE-RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSAFLQ 479 (721)
Q Consensus 407 ~~~~L~~~~~~d-~~iv~i~ad~~~~~~l---~~f~~~fp~-R~~d~GIaE~~~v~~AaGlA~~-G~~p~~-~tys~Fl~ 479 (721)
.++.|.+.+++. =+-+.. .+|+..+ +.+.+ .++ |++- ..-|+++.-+|-|+|.. |...+| .|+.+...
T Consensus 10 ~a~~lv~~L~~~GV~~vFg---~PG~~~~~l~dal~~-~~~i~~i~-~~hE~~Aa~~AdGyAr~tG~pgv~~~TsGpG~~ 84 (556)
T 3hww_A 10 WAAVILEALTRHGVRHICI---APGSRSTLLTLAAAE-NSAFIHHT-HFDERGLGHLALGLAKVSKQPVAVIVTSGTAVA 84 (556)
T ss_dssp HHHHHHHHHHTTTCCEEEE---CCCTTSHHHHHHHHH-CTTCEEEE-CSCHHHHHHHHHHHHHHHCSCEEEEECSSHHHH
T ss_pred HHHHHHHHHHHCCCCEEEE---cCCCCcHHHHHHHhh-CCCceEEE-ecCCcHHHHHHHHHHHhhCCCEEEEECCCcHHH
Confidence 455566655442 233332 3344433 34433 354 6665 47899999999999986 644444 46888777
Q ss_pred HHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHHHHHHccCCCcEEEe--eCC---HHHHHHHHHHHHHh-CC
Q 004968 480 RAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDITFMSCLPNMIVMA--PSD---EDELVDMVATVASI-DD 551 (721)
Q Consensus 480 ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~dia~~~~iPnl~V~~--Psd---~~E~~~~l~~a~~~-~~ 551 (721)
.++--| ..+...+.||+++...... .|.+ .||......+++.+-.+.... |.+ ++++..+++.|+.. ..
T Consensus 85 N~~~gi-a~A~~d~vPll~itG~~~~~~~g~~--~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~i~~~i~~A~~~~r~ 161 (556)
T 3hww_A 85 NLYPAL-IEAGLTGEKLILLTADRPPELIDCG--ANQAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHALGTLHA 161 (556)
T ss_dssp TTHHHH-HHHHHHCCCEEEEEEECCGGGSSSS--CTTCCCCTTTTTTCSSEEEECCCCCTTSCHHHHHHHHHHHHHSCCS
T ss_pred hhhHHH-HHHHHhCCCeEEEeCCCCHHHhccC--CCccccHHHHHhhheeEEEecCCCcccccHHHHHHHHHHHHhcCCC
Confidence 666655 4666789999988733222 3432 367665566777776665443 332 35688899999852 34
Q ss_pred CCEEEEecCC
Q 004968 552 RPVCFRYPRG 561 (721)
Q Consensus 552 ~P~~ir~~r~ 561 (721)
+||+|-+|..
T Consensus 162 GPV~i~iP~d 171 (556)
T 3hww_A 162 GGVHINCPFA 171 (556)
T ss_dssp SCEEEEEECC
T ss_pred CCEEEeCCcC
Confidence 7999999874
|
| >1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* | Back alignment and structure |
|---|
Probab=87.56 E-value=0.84 Score=51.33 Aligned_cols=115 Identities=15% Similarity=0.173 Sum_probs=77.1
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEE-EecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDI 519 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~-~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~di 519 (721)
|++. ...|++++.+|.|+|.. |...+| .|+.+....++..| ..+...++||+++...... .|.+..+|. ....
T Consensus 40 ~~i~-~~~E~~Aa~~A~Gyar~tg~~~v~~~tsGpG~~N~~~~l-~~A~~~~~Pll~itg~~~~~~~~~~~~q~~-~d~~ 116 (528)
T 1q6z_A 40 RYIL-ALQEACVVGIADGYAQASRKPAFINLHSAAGTGNAMGAL-SNAWNSHSPLIVTAGQQTRAMIGVEALLTN-VDAA 116 (528)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHHHTSCEEEEEEHHHHHHHTHHHH-HHHHHTTCCEEEEEEECCHHHHTTTCTTCC-TTGG
T ss_pred cEEE-ECcHHHHHHHHHHHHHHhCCCEEEEEcCChHHHHHHHHH-HHHhhcCCCEEEEeCCCcccccCCCccccc-ccHH
Confidence 6665 48999999999999998 655555 45778777777766 4567889999988743322 344333332 2334
Q ss_pred HHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 520 TFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 520 a~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
.+++.+..+. ..+.+++++...+..|+.. ..+|++|-+|...
T Consensus 117 ~~~~~~~k~~-~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d~ 162 (528)
T 1q6z_A 117 NLPRPLVKWS-YEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDD 162 (528)
T ss_dssp GSSTTSCSCE-ECCSSGGGHHHHHHHHHHHHHSSSCCCEEEEEEGGG
T ss_pred HHHHHhhHhh-hcCCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhh
Confidence 5677766653 4556666666666666542 3469999998764
|
| >2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* | Back alignment and structure |
|---|
Probab=87.18 E-value=0.56 Score=53.64 Aligned_cols=114 Identities=8% Similarity=0.004 Sum_probs=78.6
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCee-EEEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKP-FCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDI 519 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p-~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~di 519 (721)
|++.+ ..|++++.+|-|+|.. |... ++.|+.+....++.-| ..+...++||+++...... .|. |..||.....
T Consensus 45 ~~v~~-~hE~~Aa~~A~GyAr~tg~p~v~~~TsGpG~~N~~~gv-~~A~~~~vPll~itg~~~~~~~~~-~~~~Q~~d~~ 121 (589)
T 2pgn_A 45 RVINP-ATELGGAWMVNGYNYVKDRSAAVGAWHCVGNLLLHAAM-QEARTGRIPAVHIGLNSDGRLAGR-SEAAQQVPWQ 121 (589)
T ss_dssp TCBCC-SSHHHHHHHHHHHHHHHTSCCEEEEEEGGGGGGCHHHH-HHHHHTTCCEEEEEEESCGGGTTC-TTCSSCCCGG
T ss_pred eEEEe-CcHHHHHHHHHHHHHHHCCCEEEEEecCchHHHHHHHH-HHHHhcCCCEEEEecCCcccccCC-CCcccccChh
Confidence 67665 9999999999999997 5433 3446888776666655 4667889999988743332 232 2157776666
Q ss_pred HHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 520 TFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 520 a~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
. ++.+..+. +...+++++...+..|+.. ..+||+|-+|...
T Consensus 122 ~-~~~~tk~~-~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 166 (589)
T 2pgn_A 122 S-FTPIARST-QRVERLDKVGEAIHEAFRVAEGHPAGPAYVDIPFDL 166 (589)
T ss_dssp G-GTTTSSEE-EECCSGGGHHHHHHHHHHHHTSSSCCEEEEEEETHH
T ss_pred h-ccccEEEE-eecCCHHHHHHHHHHHHHHHhcCCCccEEEEeCHhh
Confidence 6 77766653 4556777777777777653 3479999998764
|
| >3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=86.52 E-value=3.7 Score=46.60 Aligned_cols=147 Identities=14% Similarity=0.177 Sum_probs=86.8
Q ss_pred HHHHHHHHHHc-CCCeEEEecCCCCccCh---HHHHHhCCC-cEeeccccHHHHHHHHHHHHhC-CCeeEE-EecHhhHH
Q 004968 407 FIEALVMEAEK-DKDIVVVHAGMEMDLSL---QLFQEKFPE-RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSAFLQ 479 (721)
Q Consensus 407 ~~~~L~~~~~~-d~~iv~i~ad~~~~~~l---~~f~~~fp~-R~~d~GIaE~~~v~~AaGlA~~-G~~p~~-~tys~Fl~ 479 (721)
.++.|.+.+++ .-+-+.. ++|+..+ +.+.+ .++ |++-+ .-|++++-+|-|+|.. |...+| .|+.+...
T Consensus 13 ~a~~lv~~L~~~GV~~vFg---~PG~~~~~l~dal~~-~~~i~~i~~-~hE~~Aa~aAdGyAr~tG~pgv~~~TsGpG~~ 87 (578)
T 3lq1_A 13 YLAAFIEELVQAGVKEAII---SPGSRSTPLALMMAE-HPILKIYVD-VDERSAGFFALGLAKASKRPVVLLCTSGTAAA 87 (578)
T ss_dssp HHHHHHHHHHHTTCCEEEE---CCCTTTHHHHHHHHH-CSSCEEEEC-SSHHHHHHHHHHHHHHHCCCEEEEECSSHHHH
T ss_pred HHHHHHHHHHHcCCCEEEE---CCCCccHHHHHHHHh-CCCceEEEe-cCcHHHHHHHHHHHHhhCCCEEEEECCchhhh
Confidence 34444444433 3333332 3344433 34443 344 77765 7999999999999987 644444 45888777
Q ss_pred HHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHHHHHHccCCCcEE--EeeCCHHH----HHHHHHHHHHh--
Q 004968 480 RAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDITFMSCLPNMIV--MAPSDEDE----LVDMVATVASI-- 549 (721)
Q Consensus 480 ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~dia~~~~iPnl~V--~~Psd~~E----~~~~l~~a~~~-- 549 (721)
.++--| ..+...+.||+++...... .|. | .+|......+++.+-.+.. -.|.+..+ +..+++.|+..
T Consensus 88 N~~~gi-a~A~~d~vPll~itG~~p~~~~g~-~-~~Qe~d~~~~~~~~tk~~~~v~~~~~~~~~~~~i~~~l~~A~~~A~ 164 (578)
T 3lq1_A 88 NYFPAV-AEANLSQIPLIVLTADRPHELRNV-G-APQAMDQLHLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAM 164 (578)
T ss_dssp TTHHHH-HHHHHTTCCEEEEEEECCGGGTTS-S-CTTCCCCTTTTGGGSSEEEECCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHH-HHHHhcCCCeEEEeCCCCHHhhcC-C-CCCCcCHhhHHhhheeeEeecCCCCCchHHHHHHHHHHHHHHHHhh
Confidence 666655 4667889999988732222 232 2 3555444566776655533 34565433 23345555543
Q ss_pred --CCCCEEEEecCC
Q 004968 550 --DDRPVCFRYPRG 561 (721)
Q Consensus 550 --~~~P~~ir~~r~ 561 (721)
..+||+|-+|..
T Consensus 165 ~gr~GPV~l~iP~d 178 (578)
T 3lq1_A 165 KTPRGPVHLNFPLR 178 (578)
T ss_dssp SSSCCCEEEEEECC
T ss_pred CCCCCcEEEECccC
Confidence 478999999874
|
| >1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 | Back alignment and structure |
|---|
Probab=85.21 E-value=5.2 Score=45.04 Aligned_cols=151 Identities=13% Similarity=0.085 Sum_probs=86.6
Q ss_pred ccHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh---HHHHHhCCC-cEeeccccHHHHHHHHHHHHhC-CCeeEE-Eec
Q 004968 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL---QLFQEKFPE-RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIP 474 (721)
Q Consensus 401 ~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l---~~f~~~fp~-R~~d~GIaE~~~v~~AaGlA~~-G~~p~~-~ty 474 (721)
.+..+++.+.|.+. .-+.+.. .+|+.-+ +.+.+ .++ |++- ...|++++.+|.|+|.. | .++| .|+
T Consensus 5 ~~~a~~l~~~L~~~---GV~~vfg---~PG~~~~~l~~al~~-~~~i~~i~-~~~E~~A~~~A~Gyar~tg-~~v~~~ts 75 (552)
T 1ovm_A 5 YCVADYLLDRLTDC---GADHLFG---VPGDYNLQFLDHVID-SPDICWVG-CANELNASYAADGYARCKG-FAALLTTF 75 (552)
T ss_dssp CBHHHHHHHHHHHT---TCCEEEE---CCCGGGHHHHHHHHH-CSSCEEEE-CSSHHHHHHHHHHHHHHHS-CEEEEEET
T ss_pred cCHHHHHHHHHHHc---CCCEEEE---CCChhHHHHHHHHhc-CCCceEEe-eCcHHHHHHHHHHHHHhhC-CcEEEEcc
Confidence 34556666665543 3333333 3344332 33433 344 5554 59999999999999987 6 5544 358
Q ss_pred HhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcH------HHHHHHccCCCcEEEeeCC--HHHHHHHHH
Q 004968 475 SAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGA------FDITFMSCLPNMIVMAPSD--EDELVDMVA 544 (721)
Q Consensus 475 s~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~------~dia~~~~iPnl~V~~Psd--~~E~~~~l~ 544 (721)
.+....++--| ..+...++|++++...... .+.+...||.. +...+++.+-......+.+ +..+...++
T Consensus 76 GpG~~N~~~gv-~~A~~~~~Pll~itg~~p~~~~~~~~~~~~~~g~~~~q~~~~~~~~~tk~~~~v~~~~~~~~i~~A~~ 154 (552)
T 1ovm_A 76 GVGELSAMNGI-AGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFYHMSEPITVAQAVLTEQNACYEIDRVLT 154 (552)
T ss_dssp THHHHHTHHHH-HHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCSHHHHHTGGGCSEEEECCTTTHHHHHHHHHH
T ss_pred CCcHHHHHHHH-HHHhhhcCCEEEEECCCCHHHHhcccccccccCCCcHHHHHHHHHhheeEEEEEccccHHHHHHHHHH
Confidence 77776666665 4667889999988743222 12221222110 2346777776665555430 233444444
Q ss_pred HHHHhCCCCEEEEecCCC
Q 004968 545 TVASIDDRPVCFRYPRGA 562 (721)
Q Consensus 545 ~a~~~~~~P~~ir~~r~~ 562 (721)
.|... .+|++|-+|...
T Consensus 155 ~a~~~-~GPV~l~iP~d~ 171 (552)
T 1ovm_A 155 TMLRE-RRPGYLMLPADV 171 (552)
T ss_dssp HHHHH-TCCEEEEEEHHH
T ss_pred HHHhC-CCCEEEEeehhh
Confidence 44432 489999888753
|
| >2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=83.80 E-value=2.8 Score=47.87 Aligned_cols=123 Identities=14% Similarity=0.137 Sum_probs=76.1
Q ss_pred HHHHHhCCC-cEeeccccHHHHHHHHHHHHhC-CCeeEE-EecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCC
Q 004968 435 QLFQEKFPE-RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSD 509 (721)
Q Consensus 435 ~~f~~~fp~-R~~d~GIaE~~~v~~AaGlA~~-G~~p~~-~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~d 509 (721)
+.+.+ .++ |++-+ .-|++++-+|-|+|.. |...+| .|+.+....++.-| ..+...++||+++...... .|.+
T Consensus 62 dal~~-~~~i~~i~~-~hE~~Aa~aA~GyAr~tgkpgv~~~TsGpG~~N~~~gi-a~A~~~~vPlv~ItG~~~~~~~g~~ 138 (604)
T 2x7j_A 62 VLCAA-HPDISVHVQ-IDERSAGFFALGLAKAKQRPVLLICTSGTAAANFYPAV-VEAHYSRVPIIVLTADRPHELREVG 138 (604)
T ss_dssp HHHHH-CTTCEEEEC-SSHHHHHHHHHHHHHHHTSCEEEEECSSHHHHTTHHHH-HHHHHHTCCEEEEEEECCGGGSSSC
T ss_pred HHHHh-CCCceEEEe-cChHHHHHHHHHHHHhhCCCEEEEECChhHHHHHHHHH-HHHhhcCCCEEEEeCCCCHHHhCCC
Confidence 34433 343 77775 9999999999999997 543333 45888776666655 4656779999988733322 3332
Q ss_pred CCCcCcHHHHHHHccCCCcEEE--eeCCH----HHHHHHHHHHHH----hCCCCEEEEecCCC
Q 004968 510 GPTQCGAFDITFMSCLPNMIVM--APSDE----DELVDMVATVAS----IDDRPVCFRYPRGA 562 (721)
Q Consensus 510 G~TH~~~~dia~~~~iPnl~V~--~Psd~----~E~~~~l~~a~~----~~~~P~~ir~~r~~ 562 (721)
.+|......+++.+-.+... .|.+. .++...+..|+. -..+||+|-+|...
T Consensus 139 --~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d~ 199 (604)
T 2x7j_A 139 --APQAINQHFLFGNFVKFFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVPLRE 199 (604)
T ss_dssp --CTTCCCCTTTTGGGSSCEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECCS
T ss_pred --CCCcCcHHHHhhhheeeeeecCCCcccchhHHHHHHHHHHHHHHhhCCCCCcEEEEcccCc
Confidence 35555555567766555433 33430 014555555544 24689999998764
|
| >2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A* | Back alignment and structure |
|---|
Probab=83.76 E-value=4.8 Score=45.48 Aligned_cols=114 Identities=14% Similarity=0.078 Sum_probs=72.4
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEE-EecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcH---
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGA--- 516 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~-~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~--- 516 (721)
|++. ...|++++.+|.|+|.. | .++| .|+.+....++.-| ..+...++||+++...... .+.+-..||..
T Consensus 44 ~~v~-~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~~~gi-a~A~~~~~Pll~itg~~~~~~~~~~~~~~~~~g~~ 120 (563)
T 2vk8_A 44 RWAG-NANELNAAYAADGYARIKG-MSCIITTFGVGELSALNGI-AGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNG 120 (563)
T ss_dssp EECC-CSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHHHHHHH-HHHHHHTCCEEEEEEECCHHHHHTTCCCTTSCSSS
T ss_pred eEEc-cCchHHHHHHHHHHHHhhC-CcEEEEcCCCcHHHHHHHH-HHHHhhCCCEEEEECCCChHHhhcccccccccCCc
Confidence 6665 49999999999999986 7 5544 45888776666665 4556779999988743322 12222222211
Q ss_pred ---HHHHHHccCCCcEEEeeCCHH----HHHHHHHHHHHhCCCCEEEEecCCC
Q 004968 517 ---FDITFMSCLPNMIVMAPSDED----ELVDMVATVASIDDRPVCFRYPRGA 562 (721)
Q Consensus 517 ---~dia~~~~iPnl~V~~Psd~~----E~~~~l~~a~~~~~~P~~ir~~r~~ 562 (721)
+...+++.+-.+.. ...+++ .+...++.|... .+|++|-+|...
T Consensus 121 ~~q~~~~~~~~~~k~~~-~v~~~~~~~~~i~~A~~~A~~~-~GPV~l~iP~d~ 171 (563)
T 2vk8_A 121 DFTVFHRMSANISETTA-MITDIATAPAEIDRCIRTTYVT-QRPVYLGLPANL 171 (563)
T ss_dssp CSSHHHHHHHTTCSEEE-ECCCTTTHHHHHHHHHHHHHHH-TSCEEEEEETTG
T ss_pred chHHHHHHhhhhEEEEE-EeCCHHHHHHHHHHHHHHHHhC-CCCEEEEechhh
Confidence 23567887766543 334443 445555555543 499999998875
|
| >2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* | Back alignment and structure |
|---|
Probab=83.53 E-value=7.5 Score=43.90 Aligned_cols=151 Identities=13% Similarity=0.054 Sum_probs=94.3
Q ss_pred ccHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh---HHHHHhCCCcEeeccccHHHHHHHHHHHHhC-CCeeE-EEecH
Q 004968 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL---QLFQEKFPERYFDVGMAEQHAVTFSAGLACG-GLKPF-CIIPS 475 (721)
Q Consensus 401 ~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l---~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~-G~~p~-~~tys 475 (721)
.+..+++.+.|.+. .-+-++.. +|+.-+ +.+.+ .+=|++.+ ..|++++-+|-|+|.. |...+ +.|+.
T Consensus 10 ~~~a~~l~~~L~~~---GV~~vfg~---PG~~~~~l~~al~~-~~i~~i~~-~~E~~Aa~~A~GyAr~tg~pgv~~~TsG 81 (568)
T 2c31_A 10 TDGFHVLIDALKMN---DIDTMYGV---VGIPITNLARMWQD-DGQRFYSF-RHEQHAGYAASIAGYIEGKPGVCLTVSA 81 (568)
T ss_dssp EEHHHHHHHHHHHT---TCCEEEEC---CCTTTHHHHHHHHH-TTCEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECSH
T ss_pred ccHHHHHHHHHHHc---CCCEEEEe---CCCccHHHHHHHHh-CCCcEEEe-CcHHHHHHHHHHHHHHhCCCEEEEEcCC
Confidence 45566666666543 33333332 233322 33433 23467765 9999999999999998 54333 34688
Q ss_pred hhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCC-CCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHh---
Q 004968 476 AFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGS-DGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI--- 549 (721)
Q Consensus 476 ~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~-dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~--- 549 (721)
+....++.-| ..+...++||+++...... .|. .| .+|......+++.+-.+. +...+++++...+..|+..
T Consensus 82 pG~~N~~~~i-~~A~~~~vPll~itg~~~~~~~~~~~~-~~Q~~dq~~~~~~~tk~~-~~v~~~~~~~~~i~~A~~~A~~ 158 (568)
T 2c31_A 82 PGFLNGVTSL-AHATTNCFPMILLSGSSEREIVDLQQG-DYEEMDQMNVARPHCKAS-FRINSIKDIPIGIARAVRTAVS 158 (568)
T ss_dssp HHHHHHHHHH-HHHHHHTCCEEEEEEECCHHHHHTTCC-CTTCCCHHHHSGGGSSEE-EECCSGGGHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHH-HHHHhcCCCEEEEccCCCccccCCCCC-cccccCHHHHHHhhhhee-eecCCHHHHHHHHHHHHHHhcC
Confidence 8887777766 4667789999988743322 231 12 355555567888776664 4445666777777666652
Q ss_pred -CCCCEEEEecCCC
Q 004968 550 -DDRPVCFRYPRGA 562 (721)
Q Consensus 550 -~~~P~~ir~~r~~ 562 (721)
..+||+|-+|...
T Consensus 159 ~~~GPV~l~iP~dv 172 (568)
T 2c31_A 159 GRPGGVYVDLPAKL 172 (568)
T ss_dssp SSCCEEEEEEETHH
T ss_pred CCCceEEEeCCHHH
Confidence 4589999998763
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 721 | ||||
| d1itza2 | 192 | c.36.1.6 (A:348-539) Transketolase (TK), Pyr modul | 3e-24 | |
| d1gpua2 | 197 | c.36.1.6 (A:338-534) Transketolase (TK), Pyr modul | 1e-23 | |
| d1r9ja1 | 190 | c.36.1.6 (A:337-526) Transketolase (TK), Pyr modul | 2e-22 | |
| d1w85b2 | 132 | c.48.1.2 (B:193-324) Pyruvate dehydrogenase E1-bet | 2e-21 | |
| d2r8oa1 | 195 | c.36.1.6 (A:333-527) Transketolase (TK), Pyr modul | 3e-21 | |
| d1umdb1 | 186 | c.36.1.7 (B:2-187) Branched-chain alpha-keto acid | 3e-20 | |
| d1ik6a2 | 135 | c.48.1.2 (A:192-326) E1-beta subunit of pyruvate d | 4e-18 | |
| d1umdb2 | 137 | c.48.1.2 (B:188-324) Branched-chain alpha-keto aci | 2e-17 | |
| d2bfdb2 | 138 | c.48.1.2 (B:205-342) Branched-chain alpha-keto aci | 3e-17 | |
| d1qs0b2 | 134 | c.48.1.2 (B:206-339) 2-oxoisovalerate dehydrogenas | 3e-17 | |
| d2ozlb2 | 138 | c.48.1.2 (B:192-329) E1-beta subunit of pyruvate d | 3e-17 | |
| d1ik6a1 | 191 | c.36.1.7 (A:1-191) E1-beta subunit of pyruvate deh | 3e-12 | |
| d2ieaa2 | 415 | c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 com | 3e-12 | |
| d2ozlb1 | 192 | c.36.1.7 (B:0-191) E1-beta subunit of pyruvate deh | 9e-11 | |
| d2bfdb1 | 203 | c.36.1.7 (B:2-204) Branched-chain alpha-keto acid | 1e-10 | |
| d1qs0b1 | 204 | c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase | 1e-10 | |
| d1gpua1 | 335 | c.36.1.10 (A:3-337) Transketolase (TK), PP module | 3e-09 | |
| d2r8oa3 | 136 | c.48.1.1 (A:528-663) Transketolase (TK), C-domain | 6e-08 | |
| d2c42a3 | 157 | c.48.1.3 (A:259-415) Pyruvate-ferredoxin oxidoredu | 8e-06 | |
| d1gpua3 | 146 | c.48.1.1 (A:535-680) Transketolase (TK), C-domain | 9e-04 | |
| d1r9ja3 | 143 | c.48.1.1 (A:527-669) Transketolase (TK), C-domain | 0.004 |
| >d1itza2 c.36.1.6 (A:348-539) Transketolase (TK), Pyr module {Maize (Zea mays) [TaxId: 4577]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Maize (Zea mays) [TaxId: 4577]
Score = 98.7 bits (245), Expect = 3e-24
Identities = 26/167 (15%), Positives = 52/167 (31%), Gaps = 8/167 (4%)
Query: 405 DCFIEALVMEAEKDKDIVVVHA------GMEMDLSLQLFQEKFPERYFDVGMAEQHAVTF 458
+ + L A ++ A + + ++ ER G+ E
Sbjct: 23 NLSQQCLNALANVVPGLIGGSADLASSNMTLLKMFGDFQKDTAEERNVRFGVREHGMGAI 82
Query: 459 SAGLA--CGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGA 516
G+A G P+C F + + + + + +G DGPT
Sbjct: 83 CNGIALHSPGFVPYCATFFVFTDYMRGAMRISALSEAGVIYVMTHDSIGLGEDGPTHQPI 142
Query: 517 FDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPRGAI 563
+ +PN++++ P+D +E RP R +
Sbjct: 143 EHLVSFRAMPNILMLRPADGNETAGAYKVAVLNRKRPSILALSRQKL 189
|
| >d1gpua2 c.36.1.6 (A:338-534) Transketolase (TK), Pyr module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 197 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 96.8 bits (240), Expect = 1e-23
Identities = 25/129 (19%), Positives = 37/129 (28%), Gaps = 2/129 (1%)
Query: 437 FQEKFPERYFDVGMAEQHAVTFSAG--LACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRL 494
+ RY G+ E G KP+ F+ A V
Sbjct: 66 GSGNYSGRYIRYGIREHAMGAIMNGISAFGANYKPYGGTFLNFVSYAAGAVRLSALSGHP 125
Query: 495 PVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPV 554
+ + VG DGPT + LPN+ V P+D +E+ P
Sbjct: 126 VIWVATHDSIGVGEDGPTHQPIETLAHFRSLPNIQVWRPADGNEVSAAYKNSLESKHTPS 185
Query: 555 CFRYPRGAI 563
R +
Sbjct: 186 IIALSRQNL 194
|
| >d1r9ja1 c.36.1.6 (A:337-526) Transketolase (TK), Pyr module {Leishmania mexicana mexicana [TaxId: 44270]} Length = 190 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Leishmania mexicana mexicana [TaxId: 44270]
Score = 93.7 bits (232), Expect = 2e-22
Identities = 29/126 (23%), Positives = 40/126 (31%), Gaps = 1/126 (0%)
Query: 437 FQEKFPERYFDVGMAEQHAVTFSAGLAC-GGLKPFCIIPSAFLQRAYDQVVNDVDQQRLP 495
RY G+ E GL G+ PF F+ A V
Sbjct: 58 SSSSKEGRYIRFGVREHAMCAILNGLDAHDGIIPFGGTFLNFIGYALGAVRLAAISHHRV 117
Query: 496 VRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVC 555
+ + VG DGPT + + +PN+ V+ PSD+ E A S P
Sbjct: 118 IYVATHDSIGVGEDGPTHQPVELVAALRAMPNLQVIRPSDQTETSGAWAVALSSIHTPTV 177
Query: 556 FRYPRG 561
R
Sbjct: 178 LCLSRQ 183
|
| >d1w85b2 c.48.1.2 (B:193-324) Pyruvate dehydrogenase E1-beta, PdhB, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 132 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TK C-terminal domain-like superfamily: TK C-terminal domain-like family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain domain: Pyruvate dehydrogenase E1-beta, PdhB, C-terminal domain species: Bacillus stearothermophilus [TaxId: 1422]
Score = 88.3 bits (218), Expect = 2e-21
Identities = 38/133 (28%), Positives = 56/133 (42%), Gaps = 4/133 (3%)
Query: 579 GKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQN 638
GK + EGKD+ ++ YGAMV LKA A L K GI V D R +PLDI+ + +
Sbjct: 1 GKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRTVQPLDIETIIGSVEK 60
Query: 639 HTFLITVEEG-SIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGL 697
I V+E G ++V I +L + PD A ++
Sbjct: 61 TGRAIVVQEAQRQAGIAANVVAEINERAILSLEAPVLRVAAPDTVYPFAQA---ESVWLP 117
Query: 698 TGHHIAATALSLL 710
+ TA ++
Sbjct: 118 NFKDVIETAKKVM 130
|
| >d2r8oa1 c.36.1.6 (A:333-527) Transketolase (TK), Pyr module {Escherichia coli [TaxId: 562]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Escherichia coli [TaxId: 562]
Score = 90.3 bits (223), Expect = 3e-21
Identities = 26/128 (20%), Positives = 41/128 (32%), Gaps = 1/128 (0%)
Query: 437 FQEKFPERYFDVGMAEQHAVTFSAGL-ACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLP 495
E Y G+ E + G+ GG P+ F++ A + V ++
Sbjct: 64 INEDAAGNYIHYGVREFGMTAIANGISLHGGFLPYTSTFLMFVEYARNAVRMAALMKQRQ 123
Query: 496 VRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVC 555
V + +G DGPT + + PNM P D+ E D P
Sbjct: 124 VMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYGVERQDGPTA 183
Query: 556 FRYPRGAI 563
R +
Sbjct: 184 LILSRQNL 191
|
| >d1umdb1 c.36.1.7 (B:2-187) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Thermus thermophilus [TaxId: 274]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase Pyr module domain: Branched-chain alpha-keto acid dehydrogenase, Pyr module species: Thermus thermophilus [TaxId: 274]
Score = 86.8 bits (214), Expect = 3e-20
Identities = 41/189 (21%), Positives = 71/189 (37%), Gaps = 21/189 (11%)
Query: 402 TYDDCFIEALVMEAEKDKDIVVVHAGME-----MDLSLQLFQEKFPERYFDVGMAEQHAV 456
T AL E KD +VV+ + ++ L Q+ P+R D ++E V
Sbjct: 4 TMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIV 63
Query: 457 TFSAGLACGGLKPFCIIP-SAFLQRAYDQVVNDVDQQRLPVRFVITSAGL------VGSD 509
+ G+A GL+P I + ++ +DQ+V+ V + R T+ + G
Sbjct: 64 GAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPSGGGVR 123
Query: 510 GPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPRGAIVRTDLP 569
G + V+A S + ++ A D+ PV F P+
Sbjct: 124 GGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKA-AIRDEDPVVFLEPKR-------- 174
Query: 570 GYRGIPIEI 578
YR + E+
Sbjct: 175 LYRSVKEEV 183
|
| >d1ik6a2 c.48.1.2 (A:192-326) E1-beta subunit of pyruvate dehydrogenase, C-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 135 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TK C-terminal domain-like superfamily: TK C-terminal domain-like family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain domain: E1-beta subunit of pyruvate dehydrogenase, C-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Score = 79.1 bits (194), Expect = 4e-18
Identities = 38/136 (27%), Positives = 53/136 (38%), Gaps = 7/136 (5%)
Query: 576 IEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVREL 635
+EIGK +V EG DV L+ YGA+V L+A ++ V V D + PLD V +
Sbjct: 4 VEIGKARVAREGDDVTLVTYGAVVHKALEA---AERVKASVEVVDLQTLNPLDFDTVLKS 60
Query: 636 CQNHTFLITVEEG-SIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLAL 694
LI + GG G+ V +A L + PD SP A
Sbjct: 61 VSKTGRLIIAHDSPKTGGLGAEVRALVAEKALDRLTAPVIRLAGPD---VPQSPIAADAA 117
Query: 695 AGLTGHHIAATALSLL 710
T I ++
Sbjct: 118 YAPTVERIIKAIEYVM 133
|
| >d1umdb2 c.48.1.2 (B:188-324) Branched-chain alpha-keto acid dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TK C-terminal domain-like superfamily: TK C-terminal domain-like family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain domain: Branched-chain alpha-keto acid dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 76.7 bits (188), Expect = 2e-17
Identities = 38/136 (27%), Positives = 54/136 (39%), Gaps = 5/136 (3%)
Query: 576 IEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVREL 635
+ IGK + EGKD+ L+ YG ++ L+A A L+K G+ V D R P D + V
Sbjct: 4 LPIGKAALRREGKDLTLICYGTVMPEVLQAAAELAKAGVSAEVLDLRTLMPWDYEAVMNS 63
Query: 636 CQNHTFLITVEEGSI-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLAL 694
++ V + F S V+ IA D L + D +A Q L
Sbjct: 64 VAKTGRVVLVSDAPRHASFVSEVAATIAEDLLDMLLAPPIRVTGFDTPYPYA----QDKL 119
Query: 695 AGLTGHHIAATALSLL 710
T I A L
Sbjct: 120 YLPTVTRILNAAKRAL 135
|
| >d2bfdb2 c.48.1.2 (B:205-342) Branched-chain alpha-keto acid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TK C-terminal domain-like superfamily: TK C-terminal domain-like family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain domain: Branched-chain alpha-keto acid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 76.7 bits (188), Expect = 3e-17
Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 6/137 (4%)
Query: 576 IEIGKGKVLVEGKDVALLGYGAMVQNCLKARA-LLSKLGIDVTVADARFCKPLDIKLVRE 634
I + + +V+ EG DV L+ +G V + + KLG+ V D R P D+ + +
Sbjct: 4 IPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKEKLGVSCEVIDLRTIIPWDVDTICK 63
Query: 635 LCQNHTFLITVEEG-SIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLA 693
L+ E GGF S +S + + L+ + D P
Sbjct: 64 SVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPF----PHIFEP 119
Query: 694 LAGLTGHHIAATALSLL 710
++
Sbjct: 120 FYIPDKWKCYDALRKMI 136
|
| >d1qs0b2 c.48.1.2 (B:206-339) 2-oxoisovalerate dehydrogenase E1b, C-domain {Pseudomonas putida [TaxId: 303]} Length = 134 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TK C-terminal domain-like superfamily: TK C-terminal domain-like family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain domain: 2-oxoisovalerate dehydrogenase E1b, C-domain species: Pseudomonas putida [TaxId: 303]
Score = 76.7 bits (188), Expect = 3e-17
Identities = 27/136 (19%), Positives = 46/136 (33%), Gaps = 8/136 (5%)
Query: 576 IEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVREL 635
+ + K + G DV++L YG V A + G+D V D R PLD+ + E
Sbjct: 4 VPLDKAAITRPGNDVSVLTYGTTVYVAQVA---AEESGVDAEVIDLRSLWPLDLDTIVES 60
Query: 636 CQNHTFLITVEEGSI-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLAL 694
+ + V E + GFG+ + + + D HA
Sbjct: 61 VKKTGRCVVVHEATRTCGFGAELVSLVQEHCFHHLEAPIERVTGWDTPYPHAQEWAYF-- 118
Query: 695 AGLTGHHIAATALSLL 710
+ A ++
Sbjct: 119 --PGPSRVGAALKKVM 132
|
| >d2ozlb2 c.48.1.2 (B:192-329) E1-beta subunit of pyruvate dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TK C-terminal domain-like superfamily: TK C-terminal domain-like family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain domain: E1-beta subunit of pyruvate dehydrogenase, C-domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 76.4 bits (187), Expect = 3e-17
Identities = 31/138 (22%), Positives = 58/138 (42%), Gaps = 4/138 (2%)
Query: 576 IEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVREL 635
I IGK K+ +G + ++ + V +CL+A A+LSK G++ V + R +P+D++ +
Sbjct: 2 IPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDMETIEAS 61
Query: 636 CQNHTFLITVEEG-SIGGFGSHVSHFIALDGLLDS-GVKWRPIVLPDNYIEHASPTQQLA 693
L+TVE G G G+ + I + + D + +A + +
Sbjct: 62 VMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNS 121
Query: 694 LAGLTGHHIAATALSLLG 711
+ I L
Sbjct: 122 I--PQVKDIIFAIKKTLN 137
|
| >d1ik6a1 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase Pyr module domain: E1-beta subunit of pyruvate dehydrogenase, Pyr module species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Score = 63.6 bits (154), Expect = 3e-12
Identities = 39/165 (23%), Positives = 66/165 (40%), Gaps = 13/165 (7%)
Query: 409 EALVMEAEKDKDIVVV-----HAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLA 463
AL E E+D+ +VV+ G ++ L++ PER D + E + F+ G+A
Sbjct: 16 MALHEEMERDERVVVLGEDVGKKGGVFLVTEGLYERFGPERVIDTPLNEGGILGFAMGMA 75
Query: 464 CGGLKPFCIIP-SAFLQRAYDQVVNDVDQQR------LPVRFVITSAGLVGSDGPTQCGA 516
GLKP I F+ D+++N + + R V+ + G+ G
Sbjct: 76 MAGLKPVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGTRGGLYHSN 135
Query: 517 FDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPRG 561
P ++V+ PS ++ A D PV F P+
Sbjct: 136 SPEAIFVHTPGLVVVMPSTPYNAKGLLKA-AIRGDDPVVFLEPKI 179
|
| >d2ieaa2 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 component, PP module {Escherichia coli [TaxId: 562]} Length = 415 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Pyruvate dehydrogenase E1 component, PP module species: Escherichia coli [TaxId: 562]
Score = 66.8 bits (162), Expect = 3e-12
Identities = 33/285 (11%), Positives = 80/285 (28%), Gaps = 33/285 (11%)
Query: 123 SSLAAVEL-TVALHHVFHAPVDKILWDV-------GEQTYAHKILTGRRSLIHTLRKKDG 174
S ++ + V +H F A ++ D+ YA L GR + +
Sbjct: 54 SFQSSATIYDVCFNHFFRARNEQDGGDLVYFQGHISPGVYARAFLEGRLTQEQLDNFRQE 113
Query: 175 ISGYTSRSESEYDPFNAGH-------GCNSVSAGLGMAVARDIK------GKRECIVTVI 221
+ G S G + A + ++ ++ + +
Sbjct: 114 VHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFL 173
Query: 222 SNGTTMAGQAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQS 280
+G ++ A++ A N++ ++N + L + + K
Sbjct: 174 GDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIINELEG-------I 226
Query: 281 SKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDG-- 338
+ ++ + + K+ + + T + G Y G
Sbjct: 227 FEGAGWNVIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKY 286
Query: 339 HNIEDLISVLQ--EVASLGSMGPVLVHVVTEENRRAEDTQKSEAI 381
L++ ++ +L G + + E K+ I
Sbjct: 287 PETAALVADWTDEQIWALNRGGHDPKKIYAAFKKAQETKGKATVI 331
|
| >d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase Pyr module domain: E1-beta subunit of pyruvate dehydrogenase, Pyr module species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.3 bits (143), Expect = 9e-11
Identities = 34/171 (19%), Positives = 62/171 (36%), Gaps = 13/171 (7%)
Query: 402 TYDDCFIEALVMEAEKDKDIV-----VVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAV 456
T D + + E E+D+ + V +S L+++ +R D ++E
Sbjct: 5 TVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFA 64
Query: 457 TFSAGLACGGLKPFCIIP-SAFLQRAYDQVVNDV------DQQRLPVRFVITSAGLVGSD 509
+ G A GL+P C F +A DQV+N PV V +
Sbjct: 65 GIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAG 124
Query: 510 GPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPR 560
Q + P + V++P + ++ ++ + A D+ PV
Sbjct: 125 VAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKS-AIRDNNPVVVLENE 174
|
| >d2bfdb1 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} Length = 203 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase Pyr module domain: Branched-chain alpha-keto acid dehydrogenase, Pyr module species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.8 bits (144), Expect = 1e-10
Identities = 35/171 (20%), Positives = 58/171 (33%), Gaps = 13/171 (7%)
Query: 402 TYDDCFIEALVMEAEKDKDIVV----VHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVT 457
AL KD V+ V G ++ L + +R F+ + EQ V
Sbjct: 21 NLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVG 80
Query: 458 FSAGLACGGLKPFCIIP-SAFLQRAYDQVVNDVDQQR-------LPVRFVITSAGLVGSD 509
F G+A G I + ++ A+DQ+VN+ + R I S
Sbjct: 81 FGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGH 140
Query: 510 GPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPR 560
G F + P + V+ P + ++ + D P F P+
Sbjct: 141 GALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLS-CIEDKNPCIFFEPK 190
|
| >d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B), Pyr module {Pseudomonas putida [TaxId: 303]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase Pyr module domain: 2-oxoisovalerate dehydrogenase (E1B), Pyr module species: Pseudomonas putida [TaxId: 303]
Score = 59.3 bits (143), Expect = 1e-10
Identities = 35/201 (17%), Positives = 70/201 (34%), Gaps = 17/201 (8%)
Query: 402 TYDDCFIEALVMEAEKDKDIVVV-----HAGMEMDLSLQLFQEKFPERYFDVGMAEQHAV 456
T A+ + E+D ++VV + G + L + R FD ++E V
Sbjct: 6 TMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIV 65
Query: 457 TFSAGLACGGLKPFCIIP-SAFLQRAYDQVVNDVDQQR------LPVRFVITSAGLVGSD 509
+ G+ GL+P I + + A DQ+V+++ + R + G
Sbjct: 66 GTAVGMGAYGLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGGGIY 125
Query: 510 GPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPRGAIVRTDLP 569
G + + + + PS+ + ++ + D PV F P+ +
Sbjct: 126 GGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIA-SIECDDPVIFLEPK-RLYNGPFD 183
Query: 570 GYRG---IPIEIGKGKVLVEG 587
G+ P + +G
Sbjct: 184 GHHDRPVTPWSKHPHSAVPDG 204
|
| >d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.0 bits (137), Expect = 3e-09
Identities = 37/192 (19%), Positives = 61/192 (31%), Gaps = 27/192 (14%)
Query: 98 ELKQLAV-EIRSELSSIVSKTEKS-LKSSLAAVELTVAL-HHVFHAPV-------DKILW 147
++ +LAV IR VSK + L L + P D+ +
Sbjct: 4 DIDKLAVSTIRILAVDTVSKANSGHPGAPLGMAPAAHVLWSQMRMNPTNPDWINRDRFVL 63
Query: 148 DVGEQT---YAHKILTGRR---SLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAG 201
G Y+ LTG + R+ + E G +S
Sbjct: 64 SNGHAVALLYSMLHLTGYDLSIEDLKQFRQLGSRTPGHPEFELPGVEVTTGPLGQGISNA 123
Query: 202 LGMAVARDIKGKRECI---------VTVISNGTTM-AGQAYEAMSNAGYLD-SNMIVILN 250
+GMA+A+ V + G + EA S AG+L N+I I +
Sbjct: 124 VGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYD 183
Query: 251 DSRHSLHPKIEE 262
D++ ++
Sbjct: 184 DNKITIDGATSI 195
|
| >d2r8oa3 c.48.1.1 (A:528-663) Transketolase (TK), C-domain {Escherichia coli [TaxId: 562]} Length = 136 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TK C-terminal domain-like superfamily: TK C-terminal domain-like family: Transketolase C-terminal domain-like domain: Transketolase (TK), C-domain species: Escherichia coli [TaxId: 562]
Score = 49.8 bits (118), Expect = 6e-08
Identities = 25/138 (18%), Positives = 44/138 (31%), Gaps = 13/138 (9%)
Query: 577 EIGKGK-VLVEGK---DVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLV 632
I +G VL + ++ + G+ V+ + A L+ G+ V D +
Sbjct: 8 NIARGGYVLKDCAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDA 67
Query: 633 RELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQL 692
+T G + ++ L+G IV + E A
Sbjct: 68 AYRESVLPKAVTARVAVEAGIADYWYKYVGLNGA---------IVGMTTFGESAPAELLF 118
Query: 693 ALAGLTGHHIAATALSLL 710
G T ++ A A LL
Sbjct: 119 EEFGFTVDNVVAKAKELL 136
|
| >d2c42a3 c.48.1.3 (A:259-415) Pyruvate-ferredoxin oxidoreductase, PFOR, domain II {Desulfovibrio africanus [TaxId: 873]} Length = 157 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TK C-terminal domain-like superfamily: TK C-terminal domain-like family: Pyruvate-ferredoxin oxidoreductase, PFOR, domain II domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domain II species: Desulfovibrio africanus [TaxId: 873]
Score = 44.2 bits (104), Expect = 8e-06
Identities = 12/91 (13%), Positives = 30/91 (32%), Gaps = 3/91 (3%)
Query: 589 DVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEG 648
+ ++ G+ + + L+ G + + R +P + +ITV +
Sbjct: 12 ERVIVSMGSSCETIEEVINHLAAKGEKIGLIKVRLYRPFVSEAFFAALPASAKVITVLDR 71
Query: 649 --SIGGFGSHVSHFIALDGLLDSGVKWRPIV 677
G G + + ++ G I+
Sbjct: 72 TKEPGAPGDPLYLDV-CSAFVERGEAMPKIL 101
|
| >d1gpua3 c.48.1.1 (A:535-680) Transketolase (TK), C-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 146 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TK C-terminal domain-like superfamily: TK C-terminal domain-like family: Transketolase C-terminal domain-like domain: Transketolase (TK), C-domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.1 bits (88), Expect = 9e-04
Identities = 20/140 (14%), Positives = 44/140 (31%), Gaps = 21/140 (15%)
Query: 581 GKVLVEGK--DVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLD---IKLVREL 635
G VL + D+ L+ G+ V ++A L+ I V D ++ +
Sbjct: 12 GYVLQDVANPDIILVATGSEVSLSVEAAKTLAAKNIKARVVSLPDFFTFDKQPLEYRLSV 71
Query: 636 CQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALA 695
++ +++VE + +G + +D + +
Sbjct: 72 LPDNVPIMSVEVLATTCWGKYAHQSFGID----------------RFGASGKAPEVFKFF 115
Query: 696 GLTGHHIAATALSLLGRTRE 715
G T +A A + +
Sbjct: 116 GFTPEGVAERAQKTIAFYKG 135
|
| >d1r9ja3 c.48.1.1 (A:527-669) Transketolase (TK), C-domain {Leishmania mexicana mexicana [TaxId: 44270]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TK C-terminal domain-like superfamily: TK C-terminal domain-like family: Transketolase C-terminal domain-like domain: Transketolase (TK), C-domain species: Leishmania mexicana mexicana [TaxId: 44270]
Score = 36.2 bits (83), Expect = 0.004
Identities = 17/134 (12%), Positives = 36/134 (26%), Gaps = 20/134 (14%)
Query: 586 EGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADA---RFCKPLDIKLVRELCQNHTFL 642
+ ++ G+ V + A LS + V V + + +
Sbjct: 17 PDLQLVIVASGSEVSLAVDAAKALSG-ELRVRVVSMPCQELFDAQPDTYRQAVLPAGVPV 75
Query: 643 ITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHI 702
++VE G+ + + + G + A G+T +
Sbjct: 76 VSVEAYVSFGWEKYSHAHVGMSG----------------FGASAPAGVLYKKFGITVEEV 119
Query: 703 AATALSLLGRTREA 716
T L R +
Sbjct: 120 VRTGRELAKRFPDG 133
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 721 | |||
| d2r8oa2 | 331 | Transketolase (TK), PP module {Escherichia coli [T | 100.0 | |
| d1itza1 | 338 | Transketolase (TK), PP module {Maize (Zea mays) [T | 100.0 | |
| d1gpua1 | 335 | Transketolase (TK), PP module {Baker's yeast (Sacc | 100.0 | |
| d1itza2 | 192 | Transketolase (TK), Pyr module {Maize (Zea mays) [ | 100.0 | |
| d1r9ja1 | 190 | Transketolase (TK), Pyr module {Leishmania mexican | 100.0 | |
| d1r9ja2 | 336 | Transketolase (TK), PP module {Leishmania mexicana | 100.0 | |
| d1gpua2 | 197 | Transketolase (TK), Pyr module {Baker's yeast (Sac | 100.0 | |
| d2r8oa1 | 195 | Transketolase (TK), Pyr module {Escherichia coli [ | 100.0 | |
| d2ieaa2 | 415 | Pyruvate dehydrogenase E1 component, PP module {Es | 100.0 | |
| d1qs0b1 | 204 | 2-oxoisovalerate dehydrogenase (E1B), Pyr module { | 99.97 | |
| d1umdb1 | 186 | Branched-chain alpha-keto acid dehydrogenase, Pyr | 99.97 | |
| d2ozlb1 | 192 | E1-beta subunit of pyruvate dehydrogenase, Pyr mod | 99.96 | |
| d1ik6a1 | 191 | E1-beta subunit of pyruvate dehydrogenase, Pyr mod | 99.96 | |
| d1w85b1 | 192 | Pyruvate dehydrogenase E1-beta, PdhB, N-terminal d | 99.95 | |
| d2bfdb1 | 203 | Branched-chain alpha-keto acid dehydrogenase, Pyr | 99.95 | |
| d1w85a_ | 365 | Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus st | 99.93 | |
| d1w85b2 | 132 | Pyruvate dehydrogenase E1-beta, PdhB, C-terminal d | 99.92 | |
| d1umdb2 | 137 | Branched-chain alpha-keto acid dehydrogenase {Ther | 99.92 | |
| d2bfdb2 | 138 | Branched-chain alpha-keto acid dehydrogenase {Huma | 99.92 | |
| d2bfda1 | 395 | Branched-chain alpha-keto acid dehydrogenase, PP m | 99.92 | |
| d2ozlb2 | 138 | E1-beta subunit of pyruvate dehydrogenase, C-domai | 99.91 | |
| d1umda_ | 362 | Branched-chain alpha-keto acid dehydrogenase, PP m | 99.91 | |
| d1qs0a_ | 407 | 2-oxoisovalerate dehydrogenase (E1B), PP module {P | 99.91 | |
| d1ik6a2 | 135 | E1-beta subunit of pyruvate dehydrogenase, C-domai | 99.9 | |
| d2ozla1 | 361 | E1-beta subunit of pyruvate dehydrogenase (PP modu | 99.89 | |
| d1qs0b2 | 134 | 2-oxoisovalerate dehydrogenase E1b, C-domain {Pseu | 99.89 | |
| d1gpua3 | 146 | Transketolase (TK), C-domain {Baker's yeast (Sacch | 99.78 | |
| d2r8oa3 | 136 | Transketolase (TK), C-domain {Escherichia coli [Ta | 99.7 | |
| d2ez9a3 | 228 | Pyruvate oxidase {Lactobacillus plantarum [TaxId: | 99.68 | |
| d1ybha3 | 208 | Acetohydroxyacid synthase catalytic subunit {Thale | 99.66 | |
| d2ihta3 | 198 | Carboxyethylarginine synthase {Streptomyces clavul | 99.65 | |
| d1r9ja3 | 143 | Transketolase (TK), C-domain {Leishmania mexicana | 99.64 | |
| d1q6za3 | 183 | Benzoylformate decarboxylase {Pseudomonas putida [ | 99.62 | |
| d1ovma3 | 196 | Indole-3-pyruvate decarboxylase {Enterobacter cloa | 99.62 | |
| d2djia3 | 229 | Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 | 99.61 | |
| d1t9ba3 | 227 | Acetohydroxyacid synthase catalytic subunit {Baker | 99.61 | |
| d1ozha3 | 192 | Catabolic acetolactate synthase {Klebsiella pneumo | 99.61 | |
| d1zpda3 | 204 | Pyruvate decarboxylase {Zymomonas mobilis [TaxId: | 99.6 | |
| d1itza3 | 136 | Transketolase (TK), C-domain {Maize (Zea mays) [Ta | 99.59 | |
| d1pvda3 | 196 | Pyruvate decarboxylase {Baker's yeast (Saccharomyc | 99.57 | |
| d2ji7a3 | 183 | Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ | 99.54 | |
| d2c42a3 | 157 | Pyruvate-ferredoxin oxidoreductase, PFOR, domain I | 99.22 | |
| d2ieaa1 | 230 | Pyruvate dehydrogenase E1 component, Pyr module {E | 99.13 | |
| d2ieaa3 | 186 | Pyruvate dehydrogenase E1 component, C-domain {Esc | 98.97 | |
| d2c42a1 | 257 | Pyruvate-ferredoxin oxidoreductase, PFOR, domain I | 98.52 | |
| d2c42a2 | 447 | Pyruvate-ferredoxin oxidoreductase, PFOR, domains | 97.92 | |
| d1zpda2 | 186 | Pyruvate decarboxylase {Zymomonas mobilis [TaxId: | 96.15 | |
| d1q6za2 | 180 | Benzoylformate decarboxylase {Pseudomonas putida [ | 95.94 | |
| d2ez9a2 | 174 | Pyruvate oxidase {Lactobacillus plantarum [TaxId: | 95.88 | |
| d2djia2 | 184 | Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 | 95.69 | |
| d2ihta2 | 186 | Carboxyethylarginine synthase {Streptomyces clavul | 95.65 | |
| d1t9ba2 | 175 | Acetohydroxyacid synthase catalytic subunit {Baker | 95.4 | |
| d2ji7a3 | 183 | Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ | 94.65 | |
| d1pvda2 | 180 | Pyruvate decarboxylase {Baker's yeast (Saccharomyc | 94.21 | |
| d1ozha2 | 181 | Catabolic acetolactate synthase {Klebsiella pneumo | 94.2 | |
| d2ji7a2 | 188 | Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ | 93.0 | |
| d1ybha2 | 195 | Acetohydroxyacid synthase catalytic subunit {Thale | 92.84 | |
| d1t9ba3 | 227 | Acetohydroxyacid synthase catalytic subunit {Baker | 91.75 | |
| d1q6za3 | 183 | Benzoylformate decarboxylase {Pseudomonas putida [ | 91.52 | |
| d1ovma2 | 178 | Indole-3-pyruvate decarboxylase {Enterobacter cloa | 90.82 | |
| d2ihta3 | 198 | Carboxyethylarginine synthase {Streptomyces clavul | 90.74 | |
| d1ozha3 | 192 | Catabolic acetolactate synthase {Klebsiella pneumo | 87.04 | |
| d1zpda3 | 204 | Pyruvate decarboxylase {Zymomonas mobilis [TaxId: | 86.23 | |
| d1ybha3 | 208 | Acetohydroxyacid synthase catalytic subunit {Thale | 83.97 | |
| d1ovma3 | 196 | Indole-3-pyruvate decarboxylase {Enterobacter cloa | 81.46 | |
| d1vmea1 | 148 | ROO-like flavoprotein TM0755, C-terminal domain {T | 81.02 |
| >d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.5e-40 Score=350.00 Aligned_cols=234 Identities=19% Similarity=0.250 Sum_probs=199.9
Q ss_pred HHHHHHHHHHHHHHhHhc-CCCCCCCcccHHHHHHHHhccc-C--------CCCcEEEecCCchH---HHHHHHhCc---
Q 004968 99 LKQLAVEIRSELSSIVSK-TEKSLKSSLAAVELTVALHHVF-H--------APVDKILWDVGEQT---YAHKILTGR--- 162 (721)
Q Consensus 99 l~~la~eiR~~~~~~~~~-~~Gh~~sslg~vel~~aL~~vf-~--------~p~D~iv~d~GH~~---y~h~~ltGr--- 162 (721)
+++||++||..+++++.+ .+||+|+++|++|++.+||+.| + .++|+||+|+||++ |+++.++|+
T Consensus 3 ~~~~a~~iR~~~~d~v~~a~sGH~G~~ls~~~i~~~Ly~~~l~~~~~~p~~~~rDrfilSkGH~~~~~Ya~l~~~G~~~~ 82 (331)
T d2r8oa2 3 RKELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRDRFVLSNGHGSMLIYSLLHLTGYDLP 82 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHhccCcCCCCCCCCCeEEEeccchHHHHHHHHHHhCCCCC
Confidence 689999999999999986 6799999999999999999753 2 24799999999999 788889996
Q ss_pred hhhhHHHHhhCC-CCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcC----------CCCeEEEEEcCCCcccchH
Q 004968 163 RSLIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKG----------KRECIVTVISNGTTMAGQA 231 (721)
Q Consensus 163 ~~~~~~~r~~gg-l~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g----------~~~~VvaviGDGal~~G~~ 231 (721)
.+++.++|+.|+ ++|||.....++..+++|++|+|+|.|+|+|+|.|+++ .+++|+|++|||+++||++
T Consensus 83 ~e~l~~f~~~gs~~~ghp~~~~~~gve~stGsLG~Gl~~avG~Ala~k~~~~~~~~~~~~~~~~~v~~l~GDGel~EG~~ 162 (331)
T d2r8oa2 83 MEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGIS 162 (331)
T ss_dssp HHHHTTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHH
T ss_pred HHHHHhcCCCCCCCCCCCCcCcCCCcccCcCchhhhhHHHHHHHHHHHHHhhhhccccccccCceEEEecccccccccch
Confidence 567888999887 78999987788888999999999999999999998754 3688999999999999999
Q ss_pred HHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHH
Q 004968 232 YEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVD 310 (721)
Q Consensus 232 ~Ealn~A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~ 310 (721)
|||+++|++++ .|||+|+++|+++ + +.+...+
T Consensus 163 wEA~~~A~~~kL~nLi~i~D~N~~~-~-------~g~~~~~--------------------------------------- 195 (331)
T d2r8oa2 163 HEVCSLAGTLKLGKLIAFYDDNGIS-I-------DGHVEGW--------------------------------------- 195 (331)
T ss_dssp HHHHHHHHHTTCTTEEEEEEECSEE-T-------TEEGGGT---------------------------------------
T ss_pred hHhhhhcchhcccceeeHHhhhhhc-c-------ccccccc---------------------------------------
Confidence 99999999999 7999999999984 1 1111100
Q ss_pred HHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccccCC
Q 004968 311 EYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGAS 389 (721)
Q Consensus 311 ~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~~ 389 (721)
+..+....|++|||+++.++||||.+++.++++++++. .++|++|+++|+||+|.+.+|+ ..+||+.++
T Consensus 196 ------~~~~~~~rf~afGw~vi~~~dghd~~~i~~A~~~a~~~-~~kP~~Ii~~TikGkG~~~~e~---~~~~Hg~~l 264 (331)
T d2r8oa2 196 ------FTDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARAV-TDKPSLLMCKTIIGFGSPNKAG---THDSHGAPL 264 (331)
T ss_dssp ------CCCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTTTT---SGGGTSSCC
T ss_pred ------cchhHHHHHHHcCCeeecccccchHHHHHHHHHHHHhh-cCCCccceeeeeeecCCcccCC---CchhhcCCC
Confidence 00111346899999998789999999999999999874 5789999999999999999885 789999763
|
| >d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Maize (Zea mays) [TaxId: 4577]
Probab=100.00 E-value=3.6e-37 Score=328.43 Aligned_cols=239 Identities=20% Similarity=0.226 Sum_probs=198.3
Q ss_pred CCHHHHHHHHHHHHHHHHHhHhc-CCCCCCCcccHHHHHHHHhcc-c--C--CC----CcEEEecCCchH---HHHHHHh
Q 004968 94 LTIKELKQLAVEIRSELSSIVSK-TEKSLKSSLAAVELTVALHHV-F--H--AP----VDKILWDVGEQT---YAHKILT 160 (721)
Q Consensus 94 ~~~~~l~~la~eiR~~~~~~~~~-~~Gh~~sslg~vel~~aL~~v-f--~--~p----~D~iv~d~GH~~---y~h~~lt 160 (721)
.+.+.+++.++.||..+++++.+ .+||+|+++|+++++.+||.. + + .| +|+||+|+||++ |+.+.++
T Consensus 2 ~~~~~~~~~~~~iR~~~~~~v~~a~sGH~G~~ls~adi~~~Ly~~~l~~~~~~p~~~~rDrfilSkGH~~~~~Ya~l~~~ 81 (338)
T d1itza1 2 ATGELLEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHVLYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLA 81 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCeEEEeccccchHHHHHHHHc
Confidence 35678999999999999999986 679999999999999999864 2 2 23 699999999999 5555688
Q ss_pred Cch----hhhHHHHhhCC-CCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcC----------CCCeEEEEEcCCC
Q 004968 161 GRR----SLIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKG----------KRECIVTVISNGT 225 (721)
Q Consensus 161 Gr~----~~~~~~r~~gg-l~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g----------~~~~VvaviGDGa 225 (721)
|+. +++.++|+.++ ++|||.....|+..++||++|+|++.|+|||+|.++.+ .+++|+|++|||+
T Consensus 82 G~~~~~~~dL~~fr~~~s~~~Ghp~~~~~pgve~stGsLG~Gl~~avG~A~a~k~~~~~~~~~~~~~~~~~v~vl~GDGe 161 (338)
T d1itza1 82 GYDSVKEEDLKQFRQWGSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGC 161 (338)
T ss_dssp TCTTCCHHHHTTTTSTTCSSCSSCCTTTCTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHH
T ss_pred CCccchHHHHHHhhccCCcCCccccCCCCCCccccCCcHHhhHHHHHHHHHHHHHHhccccccccccccceEEEEeCccc
Confidence 972 35888999987 88999987788889999999999999999999988642 3689999999999
Q ss_pred cccchHHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHH
Q 004968 226 TMAGQAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHE 304 (721)
Q Consensus 226 l~~G~~~Ealn~A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~ 304 (721)
++||++|||+++|++++ .||++|+++|+++ + +.+....
T Consensus 162 l~EG~~wEA~~~A~~~~L~NLi~i~D~N~~~-~-------dg~~~~~--------------------------------- 200 (338)
T d1itza1 162 QMEGIANEACSLAGHWGLGKLIAFYDDNHIS-I-------DGDTEIA--------------------------------- 200 (338)
T ss_dssp HHSHHHHHHHHHHHHTTCTTEEEEEEECSEE-T-------TEEGGGT---------------------------------
T ss_pred cchHHHHHHHhHhhhhhccceeeeehhhccc-c-------ccccccc---------------------------------
Confidence 99999999999999999 6999999999974 1 2111100
Q ss_pred HHHHHHHHhhcccCCCccceeeeeCceEEeccCCC-CHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCccccccccccc
Q 004968 305 WAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGH-NIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEK 383 (721)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGh-d~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~ 383 (721)
...+....|++|||+++.+.||| |.+++..++++++.. .++|++|+++|+||+|++.+|+ ..+
T Consensus 201 ------------~~~~~~~k~~a~Gw~vi~v~~g~~~~~~i~~a~~~a~~~-~~kPt~Iia~TikGkG~~~~e~---~~~ 264 (338)
T d1itza1 201 ------------FTEDVSTRFEALGWHTIWVKNGNTGYDDIRAAIKEAKAV-TDKPTLIKVTTTIGFGSPNKAN---SYS 264 (338)
T ss_dssp ------------CCSCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTTTT---SGG
T ss_pred ------------cCCCHHHHHHhcCCeEEEeeCCchhHHHHHHHHHHHHHc-cCCCceeEeecCcccCcCccCC---Ccc
Confidence 00112456899999999777775 589999999988764 5789999999999999999885 789
Q ss_pred ccccCC
Q 004968 384 QQEGAS 389 (721)
Q Consensus 384 ~Hg~~~ 389 (721)
|||.++
T Consensus 265 ~Hg~~l 270 (338)
T d1itza1 265 VHGSAL 270 (338)
T ss_dssp GTSSCC
T ss_pred hhhccC
Confidence 999753
|
| >d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6.2e-36 Score=318.46 Aligned_cols=232 Identities=19% Similarity=0.214 Sum_probs=190.3
Q ss_pred HHHHHH-HHHHHHHHHhHhc-CCCCCCCcccHHHHHHHHhcccC----CC----CcEEEecCCchH---HHHHHHhCc--
Q 004968 98 ELKQLA-VEIRSELSSIVSK-TEKSLKSSLAAVELTVALHHVFH----AP----VDKILWDVGEQT---YAHKILTGR-- 162 (721)
Q Consensus 98 ~l~~la-~eiR~~~~~~~~~-~~Gh~~sslg~vel~~aL~~vf~----~p----~D~iv~d~GH~~---y~h~~ltGr-- 162 (721)
+|++|| +.||..+++++.+ .+||+|+++|+++++.+||..|+ .| +|+||+|+||.+ |+.+.++|.
T Consensus 4 ~~~~~~~~~iR~~~~~~v~~a~sGH~G~~ls~~~i~~~Ly~~~~~~p~~p~~~~rDrfilSkGH~~~~lYa~l~~~G~~~ 83 (335)
T d1gpua1 4 DIDKLAVSTIRILAVDTVSKANSGHPGAPLGMAPAAHVLWSQMRMNPTNPDWINRDRFVLSNGHAVALLYSMLHLTGYDL 83 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHTTCSC
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhccCcCCCCCCCCCeEEEeCcchhHHHHHHHHHhCCCC
Confidence 577787 7899999999985 67999999999999999996543 23 699999999999 999999996
Q ss_pred -hhhhHHHHhhCC-CCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHc----------CCCCeEEEEEcCCCcccch
Q 004968 163 -RSLIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIK----------GKRECIVTVISNGTTMAGQ 230 (721)
Q Consensus 163 -~~~~~~~r~~gg-l~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~----------g~~~~VvaviGDGal~~G~ 230 (721)
.+++.++|++++ +.|||.. ..|+..++||++|+|++.|+|||+|.|+. ..+++|+|++|||+++||+
T Consensus 84 ~~e~L~~fr~~gs~~~ghp~~-~~pgie~stGsLG~Gl~~avG~A~a~k~~~~~~~~~~~~~~~~~v~~l~GDGel~EG~ 162 (335)
T d1gpua1 84 SIEDLKQFRQLGSRTPGHPEF-ELPGVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGI 162 (335)
T ss_dssp CHHHHTTTTCTTCSCCSSCCT-TSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHH
T ss_pred CHHHHHhcccCCCCCCCCCCC-CCCCeEeCCCChhHHHHHHHHHHHHhHhhhcccccCCcCCCCCcEEEEecchhhchhh
Confidence 577899999997 8999986 46888899999999999999999999853 3478999999999999999
Q ss_pred HHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHH
Q 004968 231 AYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKV 309 (721)
Q Consensus 231 ~~Ealn~A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~ 309 (721)
+|||+.+|++++ .|||+|+++|+++ ++.++... ...+
T Consensus 163 ~~EA~~~A~~~~L~NLi~i~D~N~~~--------~dg~~~~~--------------------------~~~~-------- 200 (335)
T d1gpua1 163 SSEASSLAGHLKLGNLIAIYDDNKIT--------IDGATSIS--------------------------FDED-------- 200 (335)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEECSEE--------TTEEGGGT--------------------------CCCC--------
T ss_pred hhhhHhHhhhhccCCEEEEEeccccc--------cccccccc--------------------------ccCC--------
Confidence 999999999999 7999999999974 12111100 0011
Q ss_pred HHHhhcccCCCccceeeeeCceEEeccCC--CCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCccccccccccccccc
Q 004968 310 DEYARGMIGPQGSTLFEELGLYYIGPVDG--HNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEG 387 (721)
Q Consensus 310 ~~~~~~~~~~~~~~l~ea~G~~~~g~vdG--hd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~ 387 (721)
....|++|||+++ .||| ||...+..++.+++.. .++|++|+++|+||+|. +.|+ ..+|||.
T Consensus 201 -----------~~~~f~a~GW~vi-~vdg~~~d~~~~~~~~~~~~~~-~~KPt~Iia~TikGkGs-~~e~---~~~~Hg~ 263 (335)
T d1gpua1 201 -----------VAKRYEAYGWEVL-YVENGNEDLAGIAKAIAQAKLS-KDKPTLIKMTTTIGYGS-LHAG---SHSVHGA 263 (335)
T ss_dssp -----------HHHHHHHHTCEEE-EESCTTTCHHHHHHHHHHHHHC-TTSCEEEEEECCTTTTS-TTTT---SGGGSSS
T ss_pred -----------HHHHHHhCCCcEE-EEcCCchhHHHHHHHHhhhhcc-cCCCcceEEeeccCCcC-cccC---chhHHhh
Confidence 1346899999998 5554 5677777777777764 57899999999999994 5564 7899997
Q ss_pred CC
Q 004968 388 AS 389 (721)
Q Consensus 388 ~~ 389 (721)
+.
T Consensus 264 ~l 265 (335)
T d1gpua1 264 PL 265 (335)
T ss_dssp CC
T ss_pred cC
Confidence 54
|
| >d1itza2 c.36.1.6 (A:348-539) Transketolase (TK), Pyr module {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Maize (Zea mays) [TaxId: 4577]
Probab=100.00 E-value=9.3e-36 Score=292.21 Aligned_cols=164 Identities=18% Similarity=0.256 Sum_probs=151.3
Q ss_pred cccHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh------HHHHHhCCCcEeeccccHHHHHHHHHHHHh--CCCeeEE
Q 004968 400 SRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL------QLFQEKFPERYFDVGMAEQHAVTFSAGLAC--GGLKPFC 471 (721)
Q Consensus 400 ~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l------~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~--~G~~p~~ 471 (721)
....|++|+++|.++++++|++++++||+.++++. ..|.+.||+||||+||+||+|+++|+|||+ .|++||+
T Consensus 18 ~~AtR~a~g~~L~~la~~~~~iv~~sADL~~St~t~~~~~~~~~~~~~p~r~i~~GIaEq~m~~iAaGlA~~~~G~~p~~ 97 (192)
T d1itza2 18 GDATRNLSQQCLNALANVVPGLIGGSADLASSNMTLLKMFGDFQKDTAEERNVRFGVREHGMGAICNGIALHSPGFVPYC 97 (192)
T ss_dssp CBCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCCTTCTTCCBCCCCSCHHHHHHHHHHHHTTCTTCEEEE
T ss_pred CchHHHHHHHHHHHHHhhCchhheeccccCCCcCcccccccccccccchhccceeceecchHHHHHHHHHHhcCCCEEEE
Confidence 45689999999999999999999999999988654 346678999999999999999999999998 5899999
Q ss_pred EecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhC
Q 004968 472 IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASID 550 (721)
Q Consensus 472 ~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~ 550 (721)
.||+.|++|+++|++ +.+++++||+++++++|+ +|+||+|||+++|+++||.+||++|++|+|..|++.++++|+...
T Consensus 98 ~tf~~F~~~~~~~~~-~~~~~~~~v~~v~~~~g~~~g~dG~TH~~ieDia~~r~iPn~~v~~P~d~~e~~~~~~~a~~~~ 176 (192)
T d1itza2 98 ATFFVFTDYMRGAMR-ISALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLVSFRAMPNILMLRPADGNETAGAYKVAVLNR 176 (192)
T ss_dssp EEEGGGHHHHHHHHH-HHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHSSSSCEEECCCSHHHHHHHHHHHHHCT
T ss_pred EEEhhhhhhccchhh-hhccccccceEEEecCCcccccCCcccHHHHHHHHHhCcCCceEEecCCHHHHHHHHHHHHHcC
Confidence 999999999998875 668999999999999999 899999999999999999999999999999999999999998777
Q ss_pred CCCEEEEecCCCcc
Q 004968 551 DRPVCFRYPRGAIV 564 (721)
Q Consensus 551 ~~P~~ir~~r~~~~ 564 (721)
++|+|||++|+..+
T Consensus 177 ~gP~yiRl~R~~~P 190 (192)
T d1itza2 177 KRPSILALSRQKLP 190 (192)
T ss_dssp TSCEEEEECSSCBC
T ss_pred CCCEEEEEcCCCCC
Confidence 89999999998743
|
| >d1r9ja1 c.36.1.6 (A:337-526) Transketolase (TK), Pyr module {Leishmania mexicana mexicana [TaxId: 44270]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Leishmania mexicana mexicana [TaxId: 44270]
Probab=100.00 E-value=2.8e-35 Score=287.85 Aligned_cols=164 Identities=22% Similarity=0.239 Sum_probs=149.0
Q ss_pred cccHHHHHHHHHHHHHHcCCCeEEEecCCCCcc-------ChHHHHHhC-CCcEeeccccHHHHHHHHHHHHh-CCCeeE
Q 004968 400 SRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDL-------SLQLFQEKF-PERYFDVGMAEQHAVTFSAGLAC-GGLKPF 470 (721)
Q Consensus 400 ~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~-------~l~~f~~~f-p~R~~d~GIaE~~~v~~AaGlA~-~G~~p~ 470 (721)
....|++++++|.++++.+|++++++||+.+++ ++.+|.+++ |+||||+|||||+|+++|+|+|+ .|++||
T Consensus 13 ~iaTR~a~g~~L~~l~~~~p~iv~~sADL~~St~t~~~~~~~~~f~~~~~~~r~i~~GIaEqnm~~iAaGla~~~g~~p~ 92 (190)
T d1r9ja1 13 AIATRKASENCLAVLFPAIPALMGGSADLTPSNLTRPASANLVDFSSSSKEGRYIRFGVREHAMCAILNGLDAHDGIIPF 92 (190)
T ss_dssp CEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCSCGGGCCCBCBTTBTTCCEEECCSCHHHHHHHHHHHHHHSSCEEE
T ss_pred CccHHHHHHHHHHHHHhhCcceEeeccccCccccccccccccccccccCCCCCeeeeccchhhHHHHHHHHHHcCCcceE
Confidence 345699999999999999999999999998775 334555554 55999999999999999999997 589999
Q ss_pred EEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHh
Q 004968 471 CIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI 549 (721)
Q Consensus 471 ~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~ 549 (721)
+++|+.|++|+++|+++. +++++||+++++++|+ +|+||+|||+++|++++|.+||++|+.|+|..|++.++.+|++.
T Consensus 93 ~~t~~~F~~r~~~~ir~~-~~~~~~v~~v~~~~g~~~g~dG~THq~ieDla~~R~iPn~~V~~PaD~~E~~~al~~a~~~ 171 (190)
T d1r9ja1 93 GGTFLNFIGYALGAVRLA-AISHHRVIYVATHDSIGVGEDGPTHQPVELVAALRAMPNLQVIRPSDQTETSGAWAVALSS 171 (190)
T ss_dssp EEEEGGGGGGGHHHHHHH-HHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHHSTTCEEECCSSHHHHHHHHHHHHHC
T ss_pred EecchhhhccchHHHHHh-cccCCceEEEEecCccccCCCCcchhHHHHHHHHHhcCCEEEEecCCHHHHHHHHHHHHHc
Confidence 999999999999999755 7889999999999999 89999999999999999999999999999999999999999887
Q ss_pred CCCCEEEEecCCCcc
Q 004968 550 DDRPVCFRYPRGAIV 564 (721)
Q Consensus 550 ~~~P~~ir~~r~~~~ 564 (721)
.++|+|||++|++.+
T Consensus 172 ~~gP~yiRl~R~n~~ 186 (190)
T d1r9ja1 172 IHTPTVLCLSRQNTE 186 (190)
T ss_dssp TTCCEEEECCSSEEC
T ss_pred CCCCEEEEecCCCCC
Confidence 789999999998854
|
| >d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module {Leishmania mexicana mexicana [TaxId: 44270]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Leishmania mexicana mexicana [TaxId: 44270]
Probab=100.00 E-value=1.3e-34 Score=308.58 Aligned_cols=232 Identities=20% Similarity=0.230 Sum_probs=189.8
Q ss_pred HHHHHHHHHHHHHHHhHhc-CCCCCCCcccHHHHHHHHhcc-c--C--CC----CcEEEecCCchH---HHHHHHhCc--
Q 004968 98 ELKQLAVEIRSELSSIVSK-TEKSLKSSLAAVELTVALHHV-F--H--AP----VDKILWDVGEQT---YAHKILTGR-- 162 (721)
Q Consensus 98 ~l~~la~eiR~~~~~~~~~-~~Gh~~sslg~vel~~aL~~v-f--~--~p----~D~iv~d~GH~~---y~h~~ltGr-- 162 (721)
.|+++|+.||..+++++.+ .+||+|+++|+++++.+||.. + + .| +|+||+|+||.+ |+...+.|+
T Consensus 3 ~l~~~a~~iR~~~~~~v~~a~sGH~G~~ls~a~i~~~Ly~~~l~~~~~~p~~~~rDrfvlSkGH~~~~lYa~l~~~G~~~ 82 (336)
T d1r9ja2 3 SIEKVANCIRCLAADIVQGGKSGHPGTPMGMAPMSAVLWTEVMKYNSQDPDWVDRDRFVMSNGHGCALQYALLHMAGYNL 82 (336)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCSCCHHHHHTHHHHHHHHHTTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHHTCSC
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCeEEEeCCccchHHHHHHHHcCCCC
Confidence 4789999999999999985 789999999999999999863 3 2 23 699999999999 888889996
Q ss_pred -hhhhHHHHhhCC-CCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHc----------CCCCeEEEEEcCCCcccch
Q 004968 163 -RSLIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIK----------GKRECIVTVISNGTTMAGQ 230 (721)
Q Consensus 163 -~~~~~~~r~~gg-l~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~----------g~~~~VvaviGDGal~~G~ 230 (721)
.+.+..+|++++ +.|||.+...++..+++|++|+|++.|+|||+|.++. .-+++|+|++|||+++||+
T Consensus 83 ~~~~l~~~~~~~s~~~ghp~~~~~pgve~stGsLG~Gl~~avG~A~a~k~~~~~~~~~~~~~~~~~vy~~~GDGel~EG~ 162 (336)
T d1r9ja2 83 TMDDLKGFRQDGSRTPGHPERFVTPGVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGV 162 (336)
T ss_dssp CHHHHHTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHH
T ss_pred cHHHHhhhccCCCcCcccccccCCCcccccccccccCcchhhHHHHHHHHHhccccccccccccceeEEeccchhhchHH
Confidence 566788899886 8899988778888899999999999999999998753 3368899999999999999
Q ss_pred HHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHH
Q 004968 231 AYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKV 309 (721)
Q Consensus 231 ~~Ealn~A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~ 309 (721)
+|||+++|++++ .|||+|++||+++ + +.+....
T Consensus 163 ~~EA~~~A~~~~L~nLi~i~D~N~~~-i-------dg~~~~~-------------------------------------- 196 (336)
T d1r9ja2 163 CQEALSLAGHLALEKLIVIYDSNYIS-I-------DGSTSLS-------------------------------------- 196 (336)
T ss_dssp HHHHHHHHHHHTCTTEEEEEEECSBC-S-------SSBGGGT--------------------------------------
T ss_pred HHHHHHHHHHhhcCCEEEEEeccccc-c-------ccccccc--------------------------------------
Confidence 999999999999 7999999999974 2 2221100
Q ss_pred HHHhhcccCCCccceeeeeCceEEeccCC--CCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCccccccccccccccc
Q 004968 310 DEYARGMIGPQGSTLFEELGLYYIGPVDG--HNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEG 387 (721)
Q Consensus 310 ~~~~~~~~~~~~~~l~ea~G~~~~g~vdG--hd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~ 387 (721)
...+....|++|||+++ .||| ++.+.+..++.+++.. .++|++|+++|++|+|.+ .+ +..++||.
T Consensus 197 -------~~~d~~~rf~afGW~vi-~Vdgg~~d~~~~~~~~~~a~~~-~~kP~~Ii~kTiiG~G~~-~e---~~~~~Hg~ 263 (336)
T d1r9ja2 197 -------FTEQCHQKYVAMGFHVI-EVKNGDTDYEGLRKALAEAKAT-KGKPKMIVQTTTIGFGSS-KQ---GTEKVHGA 263 (336)
T ss_dssp -------CCCCHHHHHHHTTCEEE-EESCTTTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTST-TT---TSGGGTSS
T ss_pred -------chhHHHHHHHHhccceE-EEecCchHHHHHHHHhhhhhhc-cCCCccceEEEEEeeccc-cc---CCcceeec
Confidence 00111346899999999 5555 3567777777777664 568999999999999975 55 47899997
Q ss_pred C
Q 004968 388 A 388 (721)
Q Consensus 388 ~ 388 (721)
+
T Consensus 264 p 264 (336)
T d1r9ja2 264 P 264 (336)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >d1gpua2 c.36.1.6 (A:338-534) Transketolase (TK), Pyr module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=7.2e-35 Score=287.23 Aligned_cols=162 Identities=20% Similarity=0.222 Sum_probs=150.1
Q ss_pred ccHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh-----------HHHHHhCCCcEeeccccHHHHHHHHHHHHhCC--C
Q 004968 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL-----------QLFQEKFPERYFDVGMAEQHAVTFSAGLACGG--L 467 (721)
Q Consensus 401 ~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l-----------~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~G--~ 467 (721)
...|++++++|.++++.+|++++.+||+.+++++ ..|.+.||+||||+||+||+|+++|+|||++| +
T Consensus 19 ~aTR~a~g~~L~~la~~~p~lv~~sADL~~St~t~~~~~~~f~~~~~~~~~~p~R~i~~GIaEq~m~~iaaGlA~~G~~~ 98 (197)
T d1gpua2 19 VATRKLSETVLEDVYNQLPELIGGSADLTPSNLTRWKEALDFQPPSSGSGNYSGRYIRYGIREHAMGAIMNGISAFGANY 98 (197)
T ss_dssp BCHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEECCTTTSSEETTCCEEECCSCHHHHHHHHHHHHHHCTTC
T ss_pred cchHHHHHHHHHHHHhhChhhcccccccCCccccccccccccccccccccCCCCceeecccchhhHHHHHHHHHHcCCce
Confidence 4679999999999999999999999999887654 23567899999999999999999999999999 6
Q ss_pred eeEEEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHH
Q 004968 468 KPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATV 546 (721)
Q Consensus 468 ~p~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a 546 (721)
+|++.+|+.|++|+++|++ +++++++||+++++++|+ +|+||+|||+++|+++||.+||+.|+.|+|..|+..++++|
T Consensus 99 ~p~~~t~~~f~~~~~~~~~-~~~~~~~~v~~v~t~~g~~~g~dG~THq~ieDia~~r~iPn~~v~~PaD~~e~~~a~~~a 177 (197)
T d1gpua2 99 KPYGGTFLNFVSYAAGAVR-LSALSGHPVIWVATHDSIGVGEDGPTHQPIETLAHFRSLPNIQVWRPADGNEVSAAYKNS 177 (197)
T ss_dssp EEEEEEEHHHHGGGHHHHH-HHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSSSCEEECCCSHHHHHHHHHHH
T ss_pred eEEEEeehhhhhhhHHHHH-HhhhcCCceEEEEecccccccccccchhhHHHHHHHhcCCCcEEEecCCHHHHHHHHHHH
Confidence 8999999999999998875 568999999999999999 89999999999999999999999999999999999999999
Q ss_pred HHhCCCCEEEEecCCCc
Q 004968 547 ASIDDRPVCFRYPRGAI 563 (721)
Q Consensus 547 ~~~~~~P~~ir~~r~~~ 563 (721)
++..++|+|||++|++.
T Consensus 178 ~~~~~gP~yiRl~R~~~ 194 (197)
T d1gpua2 178 LESKHTPSIIALSRQNL 194 (197)
T ss_dssp HHCSSCCEEEECCSSCB
T ss_pred HHcCCCCEEEEecCCCC
Confidence 98778999999999874
|
| >d2r8oa1 c.36.1.6 (A:333-527) Transketolase (TK), Pyr module {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-34 Score=284.48 Aligned_cols=163 Identities=17% Similarity=0.184 Sum_probs=148.8
Q ss_pred ccHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh-----HHHHHhCCCcEeeccccHHHHHHHHHHHHhC-CCeeEEEec
Q 004968 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL-----QLFQEKFPERYFDVGMAEQHAVTFSAGLACG-GLKPFCIIP 474 (721)
Q Consensus 401 ~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l-----~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~ty 474 (721)
...|++++++|..+++..|++++.+||+.+|++. ..|+++||+|||++||+||+|+++|+|||++ |++||+++|
T Consensus 23 ~ATR~asg~~L~~la~~~p~liggsADL~~St~t~~~~~~~f~~~~p~r~i~~GIaEq~M~~iAaGlA~~g~~~p~~stf 102 (195)
T d2r8oa1 23 IASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAAGNYIHYGVREFGMTAIANGISLHGGFLPYTSTF 102 (195)
T ss_dssp EEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCCCTTCCBTTTCTTCSEEECCSCHHHHHHHHHHHHHHSSCEEEEEEE
T ss_pred cchHHHHHHHHHHHHhhcccceecccccccccccccccccccccCCCCCeeeeeeehhhHHHHHHHHHhhCCceEEeecc
Confidence 5679999999999999999999999999988653 5688999999999999999999999999875 689999999
Q ss_pred HhhHHHHHHHHHHHhhcCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCC
Q 004968 475 SAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRP 553 (721)
Q Consensus 475 s~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P 553 (721)
+.|++|+++|+++. ++++.++++++++.|+ +|+||+|||+++|+++||.+|||+|++|+|+.|+..++++|++..++|
T Consensus 103 ~~f~~~~~~~ir~~-~~~~~~~v~v~~h~g~~~g~dG~THq~iEDia~lR~iPn~~v~~P~D~~E~~~a~~~a~~~~~gP 181 (195)
T d2r8oa1 103 LMFVEYARNAVRMA-ALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYGVERQDGP 181 (195)
T ss_dssp GGGGGTTHHHHHHH-HHTTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHHCSSSC
T ss_pred eeeeccccchhhcc-ccccccceeeeccccccccccchhhHHHHHHHHHHhhCCcEEEecCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999766 5566666677888888 899999999999999999999999999999999999999998877899
Q ss_pred EEEEecCCCcc
Q 004968 554 VCFRYPRGAIV 564 (721)
Q Consensus 554 ~~ir~~r~~~~ 564 (721)
+|||++|++.+
T Consensus 182 ~ylRl~R~~~P 192 (195)
T d2r8oa1 182 TALILSRQNLA 192 (195)
T ss_dssp EEEECCSSEEC
T ss_pred EEEEecCCCCC
Confidence 99999998844
|
| >d2ieaa2 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 component, PP module {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Pyruvate dehydrogenase E1 component, PP module species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.5e-33 Score=306.72 Aligned_cols=293 Identities=13% Similarity=0.171 Sum_probs=194.2
Q ss_pred CCccccccCCCccccCCCCHHHHHHHHHHHHHHHHHhHhc-------CCCCCCCcccHHHHHHHH-hcccCCC----CcE
Q 004968 77 EPTPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSK-------TEKSLKSSLAAVELTVAL-HHVFHAP----VDK 144 (721)
Q Consensus 77 ~~~~~l~~i~~p~~~~~~~~~~l~~la~eiR~~~~~~~~~-------~~Gh~~sslg~vel~~aL-~~vf~~p----~D~ 144 (721)
.+.|+++++.+|.|| .++ +++++.||..++.+|.+ .|||+|+++|+|||+.+| +++|+.| +|+
T Consensus 6 ~~~~~~~~~~~p~~~---~~e--~~~~~~iR~~~~~~v~~a~~~~~~~GGH~g~~ls~~~l~~vl~~~~~~~p~~~~~d~ 80 (415)
T d2ieaa2 6 NTIPVEEQPEYPGNL---ELE--RRIRSAIRWNAIMTVLRASKKDLELGGHMASFQSSATIYDVCFNHFFRARNEQDGGD 80 (415)
T ss_dssp CSSCGGGCCCCCSCH---HHH--HHHHHHHHHHHHHHHHHHHHTCSCCCCCCHHHHHHHHHHHHHHHHTCCCCCSSSCCC
T ss_pred cCCChhhcCCCCCCH---HHH--HHHHHHHHHHHHHHHHHhcCCCCCCCCchhhHHHHHHHHHHHHHhhcCCCCcCCCCC
Confidence 356788999999987 222 36889999999999863 479999999999996555 5678855 678
Q ss_pred EEecCCchH---HHHHHHhCc--hhhhHHHHhhCCCCCC---CCCCCC-CCCCcCcCCCcchHHHHHHHHHHHHH-----
Q 004968 145 ILWDVGEQT---YAHKILTGR--RSLIHTLRKKDGISGY---TSRSES-EYDPFNAGHGCNSVSAGLGMAVARDI----- 210 (721)
Q Consensus 145 iv~d~GH~~---y~h~~ltGr--~~~~~~~r~~ggl~G~---~~~~es-~~d~~~~G~~G~~is~A~G~AlA~~l----- 210 (721)
+|+++||.+ |++++++|+ .+.+.++|+.++..|. +.+... +...+.+|++|++.+.++++|.+.+.
T Consensus 81 ~ilskGHas~~lYa~l~~~g~~~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~a~~~~~~a~~~ 160 (415)
T d2ieaa2 81 LVYFQGHISPGVYARAFLEGRLTQEQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRG 160 (415)
T ss_dssp EEECCGGGHHHHHHHHHHTTSSCHHHHTTBTCCTTSSCBCSSCCTTTSTTTCCCCCCSTTHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEecCcchHHHHHHHHHcCCCchhhHHHHhhhccCCCCCCCCCCCCCCCCCcCCCchhhhHHHHHHHHHHHHHHHhhhc
Confidence 999999998 999999998 5668888887643333 222222 22334567788887777776655432
Q ss_pred --cCCCCeEEEEEcCCCcccchHHHHHHHhhhcC-CCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHH
Q 004968 211 --KGKRECIVTVISNGTTMAGQAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQL 287 (721)
Q Consensus 211 --~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~ 287 (721)
.+.+++|+|++|||+++||++|||+++|++++ .|||+|+|+|+++ +++++......+..+. .+.
T Consensus 161 ~~~~~~~~~~~~~gDg~~~eg~~~ea~~~a~~~~l~nl~~i~d~N~~~--------~~~~~~~~~~~~~~~~-----~~~ 227 (415)
T d2ieaa2 161 LKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQR--------LDGPVTGNGKIINELE-----GIF 227 (415)
T ss_dssp SCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBC--------SSSBSCTTSCHHHHHH-----HHH
T ss_pred cccCCCceEEEEecccccchHHHHHHHHHHHHhCCCeEEEEEeCCcee--------eccChhccccchHHHH-----HHH
Confidence 35688999999999999999999999999999 6999999999985 3444433322222221 223
Q ss_pred HHHHhhhhhcc-CcchHHHH---------HHHHHHh----------------hcccC--CCccceeeeeCceEEec--cC
Q 004968 288 REVAKGMTKRI-GRGMHEWA---------AKVDEYA----------------RGMIG--PQGSTLFEELGLYYIGP--VD 337 (721)
Q Consensus 288 r~~~~~~~~~~-g~~~~~~~---------~~~~~~~----------------~~~~~--~~~~~l~ea~G~~~~g~--vd 337 (721)
+..++.+.... +....++. ..+++.+ +.... +....+++.++..++.+ .|
T Consensus 228 ~~~gw~v~~~~~~~~~~~~~~~d~~~al~~~~~~~v~g~~~~~~~~~ga~~~~~~~~~~~~~~~l~~~l~~~~~~~l~~d 307 (415)
T d2ieaa2 228 EGAGWNVIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWALNRG 307 (415)
T ss_dssp HHTTCEEEEECBCGGGHHHHHHCSSCHHHHHHHHCCHHHHHHHTTSCHHHHHHHTGGGSHHHHTTSTTSCHHHHTTCCBG
T ss_pred HhcCceeEEeecchhhhhhhccchhhhhhhhhhccccccceeccccchhhhhhhhccccchhhHHHhhhhhhhhhhhhhc
Confidence 33344333322 11111110 1111100 00000 11245566676666554 49
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCCCcccccccccccccccCCC
Q 004968 338 GHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGASD 390 (721)
Q Consensus 338 Ghd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~~~Hg~~~f 390 (721)
|||++++.++++++++. .++|++||++|+||+|++++++ ..+++|+..++
T Consensus 308 GHd~~~l~~a~~~ak~~-~d~P~vI~a~TiKGkGlp~A~e--~~n~~H~~kkl 357 (415)
T d2ieaa2 308 GHDPKKIYAAFKKAQET-KGKATVILAHTIKGYGMGDAAE--GKNIAHQVKKM 357 (415)
T ss_dssp GGCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTCC--------------
T ss_pred cCchhhhHHHHHHHHhc-CCCceEEEEecccccCCCcccc--ccchhcCCCCC
Confidence 99999999999999985 5679999999999999999876 67899987543
|
| >d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B), Pyr module {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase Pyr module domain: 2-oxoisovalerate dehydrogenase (E1B), Pyr module species: Pseudomonas putida [TaxId: 303]
Probab=99.97 E-value=5.6e-32 Score=267.40 Aligned_cols=185 Identities=19% Similarity=0.239 Sum_probs=152.0
Q ss_pred CcccHHHHHHHHHHHHHHcCCCeEEEecCCCC---ccCh-HHHHHhC-CCcEeeccccHHHHHHHHHHHHhCCCeeEEEe
Q 004968 399 YSRTYDDCFIEALVMEAEKDKDIVVVHAGMEM---DLSL-QLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCII 473 (721)
Q Consensus 399 ~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~---~~~l-~~f~~~f-p~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~t 473 (721)
.+.+|++|+.++|.+++++|++++++++|++. .++. .+|.++| |+|++|+||+|++++|+|+|+|++|+|||+++
T Consensus 3 ~~m~~~~ai~~al~e~m~~d~~v~~~Gedv~~~Gg~f~~t~gl~~kfgp~Rv~dtpIaE~~~vG~A~GlA~~G~rPvve~ 82 (204)
T d1qs0b1 3 TTMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTAVGMGAYGLRPVVEI 82 (204)
T ss_dssp EECCHHHHHHHHHHHHHHHCTTEEEEETTCSSSCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred ceehHHHHHHHHHHHHHhhCCCEEEEecCCCccCCccccchHHHHHHhhhheecccccceeehhHHHHHhcCCCcEEEEE
Confidence 35789999999999999999999999999862 2444 6799999 99999999999999999999999999999998
Q ss_pred -cHhhHHHHHHHHHHHhhc--------CCcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHH
Q 004968 474 -PSAFLQRAYDQVVNDVDQ--------QRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVA 544 (721)
Q Consensus 474 -ys~Fl~ra~dqi~~~~a~--------~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~ 544 (721)
|.+|+.+++|||+|++|+ .+.|++++.... .|.+|.+||+..+.++++++||++|++|+|+.|++.+++
T Consensus 83 ~~~df~~~a~dqi~n~~ak~~~~~~~~~~~p~vir~~~g--~~~~~g~~Hs~~~~s~~~~iPgl~Vv~Ps~~~da~~ll~ 160 (204)
T d1qs0b1 83 QFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCG--GGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLI 160 (204)
T ss_dssp SCGGGCGGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEEC--CSSSCCSSSSCCCHHHHTTSTTCEEECCCSHHHHHHHHH
T ss_pred EecchhhHHHHHHHHHHHHhhcccccCcccceEEEcCcc--cccCcccccccCHHHHHhcCCCcEEEeeCCHHHHHHHHH
Confidence 899999999999999983 456777765432 233444566666679999999999999999999999999
Q ss_pred HHHHhCCCCEEEEecCCCccc-ccCCCCCCcceecCc--eEEEEeC
Q 004968 545 TVASIDDRPVCFRYPRGAIVR-TDLPGYRGIPIEIGK--GKVLVEG 587 (721)
Q Consensus 545 ~a~~~~~~P~~ir~~r~~~~~-~~~p~~~~~~~~~gk--~~vl~eG 587 (721)
+|++ +++|++|+++|..+.. .+++. +....++++ +.++++|
T Consensus 161 ~a~~-~~~Pvi~~e~k~ly~~~~~~~~-~~~~~p~~~~~~~~v~~G 204 (204)
T d1qs0b1 161 ASIE-CDDPVIFLEPKRLYNGPFDGHH-DRPVTPWSKHPHSAVPDG 204 (204)
T ss_dssp HHHH-SSSCEEEEEEGGGSSSCCCSCS-SSCCCCSTTSTTCEEESS
T ss_pred HHHh-CCCcEEEEeeHHHhCCCccCCC-ccCCCCcccCccccCCCC
Confidence 9986 7899999999986532 23332 234556666 6777765
|
| >d1umdb1 c.36.1.7 (B:2-187) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase Pyr module domain: Branched-chain alpha-keto acid dehydrogenase, Pyr module species: Thermus thermophilus [TaxId: 274]
Probab=99.97 E-value=9.2e-31 Score=256.70 Aligned_cols=160 Identities=23% Similarity=0.298 Sum_probs=141.9
Q ss_pred ccHHHHHHHHHHHHHHcCCCeEEEecCCCCccC-----hHHHHHhCCCcEeeccccHHHHHHHHHHHHhCCCeeEEEe-c
Q 004968 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLS-----LQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCII-P 474 (721)
Q Consensus 401 ~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~-----l~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~t-y 474 (721)
.+|++|+.++|.+++++|++++++++|++...| .+.|++.||+|++|+||+|++++|+|+|+|++|+|||+++ +
T Consensus 3 ~t~~~Ai~~al~e~m~~d~~v~~~g~Dv~~~gg~~~~~~~~~~~~~p~R~~~~pIaE~~~ig~a~G~A~~G~~Piv~~~~ 82 (186)
T d1umdb1 3 MTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEIQF 82 (186)
T ss_dssp ECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEECSS
T ss_pred ehHHHHHHHHHHHHHHhCcCEEEEecCcCCCCCcccccHHHHHhcCcceeeecccchhhhhhhHHHHHhccCceeEEEee
Confidence 589999999999999999999999999974332 3568899999999999999999999999999999999998 6
Q ss_pred HhhHHHHHHHHHHHhhcC--------CcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHH
Q 004968 475 SAFLQRAYDQVVNDVDQQ--------RLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATV 546 (721)
Q Consensus 475 s~Fl~ra~dqi~~~~a~~--------~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a 546 (721)
..|+.|++|||+|+++++ +.|+++....+ .+.+|.+||+.+|+++++++||++|++|+|+.|++.++++|
T Consensus 83 ~~f~~~~~dqi~n~~~~~~~~~~g~~~~~~~~~~~~G--~~~~g~~hhs~~~~~~~~~iPgl~V~~Ps~~~d~~~~l~~a 160 (186)
T d1umdb1 83 ADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPSG--GGVRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAA 160 (186)
T ss_dssp GGGCGGGHHHHHHTTTTHHHHTTTSSCCCCEEEEEEC--SSSSCGGGSSCCCHHHHHTSTTCEEEECCSHHHHHHHHHHH
T ss_pred cchhhhhHHHHHHhHHHhccccCceeeeeeeeecccc--ccCCCccccccCHHHHhhhccceeeeecCCHHHHHHHHHHH
Confidence 788899999999999975 45677665432 24578999999999999999999999999999999999999
Q ss_pred HHhCCCCEEEEecCCCc
Q 004968 547 ASIDDRPVCFRYPRGAI 563 (721)
Q Consensus 547 ~~~~~~P~~ir~~r~~~ 563 (721)
++ .++|++|++|+..+
T Consensus 161 ~~-~~~Pv~i~e~k~ly 176 (186)
T d1umdb1 161 IR-DEDPVVFLEPKRLY 176 (186)
T ss_dssp HH-CSSCEEEEEEGGGS
T ss_pred Hh-CCCcEEEEechHHh
Confidence 86 68999999998753
|
| >d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase Pyr module domain: E1-beta subunit of pyruvate dehydrogenase, Pyr module species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=3.6e-29 Score=245.28 Aligned_cols=161 Identities=20% Similarity=0.345 Sum_probs=143.0
Q ss_pred cccHHHHHHHHHHHHHHcCCCeEEEecCCCC--c-cC-hHHHHHhC-CCcEeeccccHHHHHHHHHHHHhCCCeeEEEe-
Q 004968 400 SRTYDDCFIEALVMEAEKDKDIVVVHAGMEM--D-LS-LQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCII- 473 (721)
Q Consensus 400 ~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~--~-~~-l~~f~~~f-p~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~t- 473 (721)
+.+|++|+.++|.+++++|++++++++|++. | ++ ..++.++| |+|++|+||+|++++|+|+|+|++|+|||+++
T Consensus 3 ~it~~eAi~~al~~~m~~d~~v~i~Gedv~~~gg~f~~t~gl~~~fg~~Rv~dtPisE~~~~G~a~G~A~~G~rPive~~ 82 (192)
T d2ozlb1 3 QVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFM 82 (192)
T ss_dssp EEEHHHHHHHHHHHHHHHCTTEEEEETTSSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEECS
T ss_pred eeeHHHHHHHHHHHHHhhCCCEEEEecCCCccCCccccccchhhhcccceEEecccchhHHHHHHHHHHhcCCceEEEEE
Confidence 4689999999999999999999999999963 2 33 36788887 89999999999999999999999999999998
Q ss_pred cHhhHHHHHHHHHHHhhc--------CCcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 004968 474 PSAFLQRAYDQVVNDVDQ--------QRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVAT 545 (721)
Q Consensus 474 ys~Fl~ra~dqi~~~~a~--------~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~ 545 (721)
|.+|+.+++|||+|++++ +++||+++...++..| .|++|++..+ ++++++||++|++|+|+.|++.++++
T Consensus 83 ~~df~~~a~dqi~n~~ak~~~~~~g~~~~pvvir~~~g~~~g-~g~~Hs~~~~-~~~~~~PGl~Vv~Ps~p~da~gll~~ 160 (192)
T d2ozlb1 83 TFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAG-VAAQHSQCFA-AWYGHCPGLKVVSPWNSEDAKGLIKS 160 (192)
T ss_dssp SGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEECSCCSS-CCGGGCCCCH-HHHHTSTTCEEECCCSHHHHHHHHHH
T ss_pred eccchhhhHHHHHhhhhhhhhhhCCcccceEEEEeccCCCCC-cccccccchH-HhhccCCceEEEecCCHHHHHHHHHH
Confidence 899999999999999874 6789999987665433 5788888776 89999999999999999999999999
Q ss_pred HHHhCCCCEEEEecCCCc
Q 004968 546 VASIDDRPVCFRYPRGAI 563 (721)
Q Consensus 546 a~~~~~~P~~ir~~r~~~ 563 (721)
|++ +++|++|.++|..+
T Consensus 161 Ai~-~~~Pvi~~E~k~ly 177 (192)
T d2ozlb1 161 AIR-DNNPVVVLENELMY 177 (192)
T ss_dssp HHH-SSSCEEEEECHHHH
T ss_pred HHh-CCCCEEEEEcHHHh
Confidence 986 78999999998764
|
| >d1ik6a1 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase Pyr module domain: E1-beta subunit of pyruvate dehydrogenase, Pyr module species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.96 E-value=5.1e-29 Score=244.17 Aligned_cols=160 Identities=23% Similarity=0.354 Sum_probs=126.0
Q ss_pred ccHHHHHHHHHHHHHHcCCCeEEEecCCCC--c-cC-hHHHHHhC-CCcEeeccccHHHHHHHHHHHHhCCCeeEEEe-c
Q 004968 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEM--D-LS-LQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCII-P 474 (721)
Q Consensus 401 ~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~--~-~~-l~~f~~~f-p~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~t-y 474 (721)
.++.+|+.++|.+++++|++++++++|++. + ++ ..+|.++| |+|++|+||+|++++++|+|+|++|+|||+++ |
T Consensus 8 ~~~~~Ai~~Al~e~m~~d~~v~~~GeDv~~~Gg~f~~t~gL~~kfg~~Rv~dtpIsE~~~~G~a~GlA~~G~rPive~~~ 87 (191)
T d1ik6a1 8 ANMAKAINMALHEEMERDERVVVLGEDVGKKGGVFLVTEGLYERFGPERVIDTPLNEGGILGFAMGMAMAGLKPVAEIQF 87 (191)
T ss_dssp ECHHHHHHHHHHHHHHHCTTEEEEEC---------CTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCeeecchhHHHHhhhheeeccccchhHHHHHHHHHHHhcCceEEEEEe
Confidence 578999999999999999999999999863 2 33 36788888 89999999999999999999999999999997 8
Q ss_pred HhhHHHHHHHHHHHhhc--------CCcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHH
Q 004968 475 SAFLQRAYDQVVNDVDQ--------QRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATV 546 (721)
Q Consensus 475 s~Fl~ra~dqi~~~~a~--------~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a 546 (721)
.+|+.+++|||+|++++ .+.|+++....++ +.+|++||+.++.++++++||++|++|+|+.|++.++++|
T Consensus 88 ~df~~~a~dQi~n~~ak~~~~s~g~~~~p~vir~~~G~--~~~gg~~Hs~~~~a~~~~iPgl~Vv~Ps~p~da~~ll~~a 165 (191)
T d1ik6a1 88 VDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGS--GTRGGLYHSNSPEAIFVHTPGLVVVMPSTPYNAKGLLKAA 165 (191)
T ss_dssp C----CCHHHHHHHHHHHHC------CCCCEEEEEECC-------------HHHHHHTCTTCEEECCCSHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCccccccceeecccC--CCCCcccccCCHHHHHHHhhcccEEecCCHHHHHHHHHHH
Confidence 89999999999999986 3678888875432 3346777777777999999999999999999999999999
Q ss_pred HHhCCCCEEEEecCCCc
Q 004968 547 ASIDDRPVCFRYPRGAI 563 (721)
Q Consensus 547 ~~~~~~P~~ir~~r~~~ 563 (721)
++ +++|+++++||..+
T Consensus 166 l~-~~~Pv~~~e~k~ly 181 (191)
T d1ik6a1 166 IR-GDDPVVFLEPKILY 181 (191)
T ss_dssp HH-SSSCEEEEEEGGGS
T ss_pred Hh-CCCcEEEEEcHHHh
Confidence 87 68899999999764
|
| >d1w85b1 c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta, PdhB, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase Pyr module domain: Pyruvate dehydrogenase E1-beta, PdhB, N-terminal domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.95 E-value=2.9e-28 Score=236.94 Aligned_cols=174 Identities=19% Similarity=0.291 Sum_probs=150.4
Q ss_pred cccHHHHHHHHHHHHHHcCCCeEEEecCCC---CccCh-HHHHHhC-CCcEeeccccHHHHHHHHHHHHhCCCeeEEEe-
Q 004968 400 SRTYDDCFIEALVMEAEKDKDIVVVHAGME---MDLSL-QLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCII- 473 (721)
Q Consensus 400 ~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~---~~~~l-~~f~~~f-p~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~t- 473 (721)
..+|.+++.++|.++|++|++++++++|++ |.++. .+++++| |+|++|+||+|.+++|+|.|+|+.|+|||+++
T Consensus 2 ~~t~~~Ai~~al~~~m~~d~~v~i~GedV~~~GGvf~~t~GL~~~fG~~Rv~dtPisE~~~~G~a~G~Al~G~rpIve~~ 81 (192)
T d1w85b1 2 QMTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGIGGLAIGLALQGFRPVPEIQ 81 (192)
T ss_dssp EECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEBCS
T ss_pred ceeHHHHHHHHHHHHHhhCCCEEEEecCCCccCcccccchhhHhhhhhheeecccccccchHHHHHHHHhccCceEEEEE
Confidence 368999999999999999999999999985 23443 7899999 78999999999999999999999999999997
Q ss_pred cHhhHHHHHHHHHHHhhc--------CCcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 004968 474 PSAFLQRAYDQVVNDVDQ--------QRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVAT 545 (721)
Q Consensus 474 ys~Fl~ra~dqi~~~~a~--------~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~ 545 (721)
|.+|+..++|||+|++++ .++|++++...++. +..|++|++..+ +++.++||++|++|+++.|++.++++
T Consensus 82 ~~dF~~~a~dqi~n~aak~~~~sgg~~~~P~viR~~~G~g-~~~g~~HSqs~e-~~f~~~PGlkVv~Ps~p~Da~gll~~ 159 (192)
T d1w85b1 82 FFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPFGGG-VHTPELHSDSLE-GLVAQQPGLKVVIPSTPYDAKGLLIS 159 (192)
T ss_dssp SGGGGGGTHHHHHTTGGGHHHHTTTSSCCCCEEEEEECSS-SCCCTTSSCCCH-HHHTTSTTCEEECCSSHHHHHHHHHH
T ss_pred eccchhHHHHHHHHHHhhcchhcCCccccceEEEeccccc-cCCccccccCHH-HHhhcCCCeeEEeeCCHHHHHHHHHH
Confidence 999999999999999985 37899988765443 345899999998 89999999999999999999999999
Q ss_pred HHHhCCCCEEEEecCCCcc--cccCCCCCCccee
Q 004968 546 VASIDDRPVCFRYPRGAIV--RTDLPGYRGIPIE 577 (721)
Q Consensus 546 a~~~~~~P~~ir~~r~~~~--~~~~p~~~~~~~~ 577 (721)
|++ +++|+++.++|..+. ..++|+. ++.+|
T Consensus 160 Ai~-~~~Pvi~~E~k~ly~~~~~~vp~~-~y~iP 191 (192)
T d1w85b1 160 AIR-DNDPVIFLEHLKLYRSFRQEVPEG-EYTIP 191 (192)
T ss_dssp HHH-SSSCEEEEEETTTSSSCCEECCSS-CCCCC
T ss_pred HHh-CCCCEEEEEcHHHhhcCCCCCCCC-CcCCC
Confidence 986 789999999998753 2456643 44443
|
| >d2bfdb1 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase Pyr module domain: Branched-chain alpha-keto acid dehydrogenase, Pyr module species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=2.3e-28 Score=240.73 Aligned_cols=163 Identities=19% Similarity=0.257 Sum_probs=138.0
Q ss_pred CcccHHHHHHHHHHHHHHcCCCeEEEecCCCC--ccCh-HHHHHhC-CCcEeeccccHHHHHHHHHHHHhCCCeeEEEe-
Q 004968 399 YSRTYDDCFIEALVMEAEKDKDIVVVHAGMEM--DLSL-QLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCII- 473 (721)
Q Consensus 399 ~~~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~--~~~l-~~f~~~f-p~R~~d~GIaE~~~v~~AaGlA~~G~~p~~~t- 473 (721)
+..+|.+++.++|.++|++|++++++++|++. .++. .+|.++| |+|+||+||+|++++|+|+|+|++|+|||+++
T Consensus 18 ~~~~~~~Ai~~al~~~m~~d~~v~~~GedV~~GGvf~~t~gL~~kfG~~Rv~dtPIsE~~~~G~a~G~A~~G~rPive~~ 97 (203)
T d2bfdb1 18 QKMNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQ 97 (203)
T ss_dssp EEECHHHHHHHHHHHHHHHCTTCEEEETTTTTTCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCCEEEECS
T ss_pred eeeeHHHHHHHHHHHHHhhCCCEEEEecCcCCCCccccchhhhhhhhhhheeccccccceecchhhhhhhcccceEEEEE
Confidence 34689999999999999999999999999873 2454 6799999 89999999999999999999999999999998
Q ss_pred cHhhHHHHHHHHHHHhhc--------CCcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 004968 474 PSAFLQRAYDQVVNDVDQ--------QRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVAT 545 (721)
Q Consensus 474 ys~Fl~ra~dqi~~~~a~--------~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~ 545 (721)
|.+|+.+|+|||+|++++ .+.|++++....|. +..|++||+..+.++++++||++|++|+|+.|++.++++
T Consensus 98 f~dF~~~a~dqi~n~~ak~~~~~~g~~~~~~vv~~~~~g~-~~~g~~~HSq~~~~~~~~~PGl~Vv~Ps~p~Da~gll~~ 176 (203)
T d2bfdb1 98 FADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGC-VGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLS 176 (203)
T ss_dssp SGGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESC-CSSCGGGSSCCCHHHHHTSTTCEEECCSSHHHHHHHHHH
T ss_pred ehhhhhhhHHHHHHHHhhhhcccCCccccccceeeecccc-CccccccccccHHHHHcCCCCcEEEecCCHHHHHHHHHH
Confidence 999999999999999986 24444444333332 234555555555599999999999999999999999999
Q ss_pred HHHhCCCCEEEEecCCCc
Q 004968 546 VASIDDRPVCFRYPRGAI 563 (721)
Q Consensus 546 a~~~~~~P~~ir~~r~~~ 563 (721)
|++ +++|++|+++|..+
T Consensus 177 ai~-~~~Pvi~~E~k~Ly 193 (203)
T d2bfdb1 177 CIE-DKNPCIFFEPKILY 193 (203)
T ss_dssp HHH-SSSCEEEEEEGGGT
T ss_pred HHh-CCCcEEEEeeHHHh
Confidence 986 78999999998764
|
| >d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Pyruvate dehydrogenase E1-alpha, PdhA species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.93 E-value=7.3e-25 Score=234.94 Aligned_cols=240 Identities=18% Similarity=0.175 Sum_probs=170.2
Q ss_pred CCccccc---cCCCccccCCCCHHHHHHHHHHH---HHH---HHHhH--hcCCCCCCCcccHHHHHHHHhcccCCCCcEE
Q 004968 77 EPTPILD---LVENPLRLKSLTIKELKQLAVEI---RSE---LSSIV--SKTEKSLKSSLAAVELTVALHHVFHAPVDKI 145 (721)
Q Consensus 77 ~~~~~l~---~i~~p~~~~~~~~~~l~~la~ei---R~~---~~~~~--~~~~Gh~~sslg~vel~~aL~~vf~~p~D~i 145 (721)
|-+.+|+ ++-.|..+.+++.++|.++-+.+ |.. +.... ++. |..+++.|+-.+.+++...++ |+|++
T Consensus 18 ~~~~~l~~~g~~~~~~~~p~ls~e~l~~~yr~M~l~R~~e~~~~~l~~qG~i-g~~h~~~GqEa~~vg~~~~l~-~~D~i 95 (365)
T d1w85a_ 18 PTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRL-GFYAPTAGQEASQIASHFALE-KEDFI 95 (365)
T ss_dssp CEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-CSCCCCTTCHHHHHHHHHTCC-TTCEE
T ss_pred CeEEEECCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc-ccccCCCChHHHHHHHHHhCC-CcCEe
Confidence 3344554 34445566789999988875544 322 22222 234 778899998555555544444 78999
Q ss_pred EecCCchHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCC
Q 004968 146 LWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGT 225 (721)
Q Consensus 146 v~d~GH~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGa 225 (721)
+. .||.++|.+..|...........|...|...+ ...+..-.++++|+++|.|+|+|+|.|++++++.+||++|||+
T Consensus 96 ~~--~yR~hg~~la~G~~~~~~~~~~~G~~~g~~~~-~~~~~~~~~~ivG~~~p~AvG~A~a~k~~~~~~v~v~~~GDGa 172 (365)
T d1w85a_ 96 LP--GYRDVPQIIWHGLPLYQAFLFSRGHFHGNQIP-EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGG 172 (365)
T ss_dssp EC--CSSCHHHHHHTTCCHHHHHHHHHTCGGGGCCC-TTCCBCCCCCSTTHHHHHHHHHHHHHHHTTCSCCEEEEEETGG
T ss_pred ee--cccchheeeecCCCHHHHHHhhCCCCCccCCC-CCceeeccccccCccccchhhHHhhhhhcccCCceeeeccCCc
Confidence 98 99999999999974432222333433232221 1122222468999999999999999999999999999999999
Q ss_pred cccchHHHHHHHhhhcCCCEEEEEECCCCC-cCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHH
Q 004968 226 TMAGQAYEAMSNAGYLDSNMIVILNDSRHS-LHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHE 304 (721)
Q Consensus 226 l~~G~~~Ealn~A~~~~~plivIv~dN~~~-s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~ 304 (721)
+++|.+||+||+|+.|++|+||||+||++. |+|+..+...
T Consensus 173 ~~eG~f~EalN~A~~~~lPvlfv~eNN~~aist~~~~~~~~--------------------------------------- 213 (365)
T d1w85a_ 173 TSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPVEKQTVA--------------------------------------- 213 (365)
T ss_dssp GGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSC---------------------------------------
T ss_pred ccchhHHHHHHHhhhcccCceEEEEEecccccccccccccc---------------------------------------
Confidence 999999999999999999999999999983 2221111100
Q ss_pred HHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEEeccCCCccc
Q 004968 305 WAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL--GSMGPVLVHVVTEENRRAEDT 375 (721)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~--~~~~P~lI~v~T~kg~G~~~a 375 (721)
.+....++++|+.++ .|||+|+.++.+++++|.+. +.++|++||++|.+-.|+...
T Consensus 214 --------------~~~~~r~~~~Gi~~~-~vDG~D~~~v~~a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~ 271 (365)
T d1w85a_ 214 --------------KTLAQKAVAAGIPGI-QVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGPHTMS 271 (365)
T ss_dssp --------------SCSGGGGGGTTCCEE-EEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCSSCSCSS
T ss_pred --------------cchhhhcccccCceE-EEecchhHHHHHHHHHHHHHhhcCCccEEEEeecccccccCCc
Confidence 112446788999998 78999999888877665431 257899999999998887543
|
| >d1w85b2 c.48.1.2 (B:193-324) Pyruvate dehydrogenase E1-beta, PdhB, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TK C-terminal domain-like superfamily: TK C-terminal domain-like family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain domain: Pyruvate dehydrogenase E1-beta, PdhB, C-terminal domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.92 E-value=1.5e-25 Score=207.63 Aligned_cols=130 Identities=29% Similarity=0.381 Sum_probs=120.4
Q ss_pred CceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEcCCC-CCChHHHH
Q 004968 579 GKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHV 657 (721)
Q Consensus 579 gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~~-~gG~gs~v 657 (721)
||++++++|+|+|||+||.|+..|++|++.|+++||+++|||++|++|||.+.+.+.++++++++|+||+. .||||++|
T Consensus 1 Gk~~v~~~G~dvtIis~G~~~~~al~Aa~~L~~~gi~~~vid~~~lkPlD~~~i~~~~~kt~~vivveE~~~~gG~gs~i 80 (132)
T d1w85b2 1 GKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRTVQPLDIETIIGSVEKTGRAIVVQEAQRQAGIAANV 80 (132)
T ss_dssp TCCEEEECCSSEEEEECTTHHHHHHHHHHHHHHTTCCEEEEECSEEESCCHHHHHHHHHHHSCEEEEEEEETTSSSHHHH
T ss_pred CceEEEEeCCCEEEEEChHHHHHHHHHHHHHHhcCCCeEEEeeeccCCcchhhhhHHHhccCCeeEEecccccccHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999997 79999999
Q ss_pred HHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhh
Q 004968 658 SHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 711 (721)
Q Consensus 658 ~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 711 (721)
++++.++++...+.+++++|+||.|+++|+.+ +.+++++++|++++++++.
T Consensus 81 ~~~l~~~~~~~l~~~v~~ig~~d~~~p~~~~e---~~~~~~~~~I~~~i~~ll~ 131 (132)
T d1w85b2 81 VAEINERAILSLEAPVLRVAAPDTVYPFAQAE---SVWLPNFKDVIETAKKVMN 131 (132)
T ss_dssp HHHHHHHHGGGCSSCCEEEEECSSSSCCGGGH---HHHSCCHHHHHHHHHHHHT
T ss_pred HHHHHHhchhccCCCeEEecCCCcCCCCcCHH---HHhCcCHHHHHHHHHHHhC
Confidence 99999988755567899999999999988644 5588999999999999875
|
| >d1umdb2 c.48.1.2 (B:188-324) Branched-chain alpha-keto acid dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TK C-terminal domain-like superfamily: TK C-terminal domain-like family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain domain: Branched-chain alpha-keto acid dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.92 E-value=2.2e-25 Score=207.74 Aligned_cols=134 Identities=28% Similarity=0.225 Sum_probs=122.3
Q ss_pred cceecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEcCCC-CCC
Q 004968 574 IPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-IGG 652 (721)
Q Consensus 574 ~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~~-~gG 652 (721)
|.+++||++++|+|+|++||++|.|+..|++|++.|+++||+++|||+||++|||++++.++++++++++|+||+. .||
T Consensus 2 Y~~~iGk~~v~r~G~dvtiis~G~~~~~al~aa~~L~~~gi~~~vid~~~lkPlD~~~i~~sv~kt~~vv~veE~~~~gg 81 (137)
T d1umdb2 2 YTLPIGKAALRREGKDLTLICYGTVMPEVLQAAAELAKAGVSAEVLDLRTLMPWDYEAVMNSVAKTGRVVLVSDAPRHAS 81 (137)
T ss_dssp CCCCTTCCEEEECCSSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECCEEETCCHHHHHHHHHHHSCEEEEEEEESTTC
T ss_pred ceEeCCEEEEEEeCCCEEEEEcchhhhhhhhhhhcccccCcceEEEeecccCCcchhhhhHHHhccCcEEEEEcccccch
Confidence 6788999999999999999999999999999999999999999999999999999999999999999999999997 799
Q ss_pred hHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhh
Q 004968 653 FGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 711 (721)
Q Consensus 653 ~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 711 (721)
||+.|.+.+.++++.....++.+++.+|.|.+++. .+.+++++++|+++++++|.
T Consensus 82 ~g~~v~~~l~e~~~~~~~~~i~~~~~~d~~~p~~~----~~~~~l~~~~I~~~i~~~l~ 136 (137)
T d1umdb2 82 FVSEVAATIAEDLLDMLLAPPIRVTGFDTPYPYAQ----DKLYLPTVTRILNAAKRALD 136 (137)
T ss_dssp HHHHHHHHHHHHHGGGCSSCCEEEEECSSCCCSTT----HHHHSCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhcCCCeEEEccCCCCCCcch----HHHhCcCHHHHHHHHHHHhC
Confidence 99999999998876434567788999999998864 35689999999999999874
|
| >d2bfdb2 c.48.1.2 (B:205-342) Branched-chain alpha-keto acid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TK C-terminal domain-like superfamily: TK C-terminal domain-like family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain domain: Branched-chain alpha-keto acid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=2.2e-25 Score=207.67 Aligned_cols=134 Identities=19% Similarity=0.256 Sum_probs=122.8
Q ss_pred cceecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhC-CCCeEEeecCccccccHHHHHHHhccCCeEEEEcCCC-CC
Q 004968 574 IPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKL-GIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-IG 651 (721)
Q Consensus 574 ~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~-Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~~-~g 651 (721)
|.+++||++++++|+|+|||+||.|++.|++|++.|+++ ||+++|||++|++|||.+.+.++++++++++||||+. .|
T Consensus 2 y~i~iGk~~v~~~G~DitIis~G~~~~~al~aa~~L~~~~gi~~~vid~~~l~PlD~~~i~~s~~kt~~livvee~~~~g 81 (138)
T d2bfdb2 2 YNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKEKLGVSCEVIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTG 81 (138)
T ss_dssp CCCCSSCCEEEECCSSEEEEECTTHHHHHHHHHHHHHHHHCCCEEEEECCEEESCCHHHHHHHHHHHSCEEEEEEEESTT
T ss_pred eeEeCCEEEEEEeCCeEEEEEChHHHHHHHHHHHHHHhcCCcceeeeeeccccccchHHHHHHhcccCeEEEecCccccc
Confidence 568899999999999999999999999999999999765 9999999999999999999999999999999999997 79
Q ss_pred ChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhh
Q 004968 652 GFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 711 (721)
Q Consensus 652 G~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 711 (721)
|||++|++.+.++++...+.++.+++.||.|.++. +.+.+.+|++.|+++|+++++
T Consensus 82 G~gs~i~~~l~~~~~~~l~~~~~ri~~~d~p~p~~----le~~~~~~~~~I~~~i~~lln 137 (138)
T d2bfdb2 82 GFASEISSTVQEECFLNLEAPISRVCGYDTPFPHI----FEPFYIPDKWKCYDALRKMIN 137 (138)
T ss_dssp CHHHHHHHHHHHHHGGGCSSCCEEEEECSSCCCST----THHHHSCCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhhHhhCCCCcEEECCCCCCCChh----HHHHhCCCHHHHHHHHHHHhC
Confidence 99999999999998755567889999999988753 556788999999999999875
|
| >d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Branched-chain alpha-keto acid dehydrogenase, PP module species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=4e-24 Score=231.22 Aligned_cols=240 Identities=13% Similarity=0.115 Sum_probs=170.0
Q ss_pred cccccc---CCCccccCCCCHHHHHHHHHHH---HHH---HH--HhHhcCCCCCCCcccHHHHHHHHhcccCCCCcEEEe
Q 004968 79 TPILDL---VENPLRLKSLTIKELKQLAVEI---RSE---LS--SIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILW 147 (721)
Q Consensus 79 ~~~l~~---i~~p~~~~~~~~~~l~~la~ei---R~~---~~--~~~~~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~ 147 (721)
+.+||. +-.|....+|+.++|.++-+.+ |.+ +. +.-++.+|+.+ +.|+-.+.+++-..+ .++|+++.
T Consensus 29 ~r~ld~~g~~~~~~~~~~ls~e~l~~~Yr~M~~~R~~e~~~~~l~~~G~i~~~~~-~~GqEA~~vg~~~al-~~~D~~~~ 106 (395)
T d2bfda1 29 YRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMT-NYGEEGTHVGSAAAL-DNTDLVFG 106 (395)
T ss_dssp ECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCC-CTTCHHHHHHHHHTS-CTTSEEEC
T ss_pred eEEECCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccC-CCChHHHHHHHHHHc-CCCCeecc
Confidence 456764 4457778889999988874443 432 22 22234567665 679854445554444 48999998
Q ss_pred cCCchHHHHHHHhCchhhhHHHHhhCCCCCCCCC-CCCCC------CCcC-cCCCcchHHHHHHHHHHHHHcCCCCeEEE
Q 004968 148 DVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSR-SESEY------DPFN-AGHGCNSVSAGLGMAVARDIKGKRECIVT 219 (721)
Q Consensus 148 d~GH~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~-~es~~------d~~~-~G~~G~~is~A~G~AlA~~l~g~~~~Vva 219 (721)
.||.++|.+..|...+.....-+|...|+.++ ..|.| .+++ ++++|+++|.|+|+|+|.++++.++.+||
T Consensus 107 --~yR~h~~~la~G~~~~~~~ael~g~~~g~~~Grggs~H~~~~~~~~~~~~~ivg~~~p~A~G~A~a~k~~~~~~v~v~ 184 (395)
T d2bfda1 107 --QAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVIC 184 (395)
T ss_dssp --CSCCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTHHHHHHHHHHHHHHHTCCCCEEE
T ss_pred --ccchhHhhhhhhCCHHHHHHHHhhcccCccccccccccccccccccccccccccccccHHHHHHHHhhhcCccccccc
Confidence 89999999999974433222335555565553 23443 2343 68999999999999999999999999999
Q ss_pred EEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccC
Q 004968 220 VISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIG 299 (721)
Q Consensus 220 viGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g 299 (721)
++|||++++|.+||+||+|+.|++|+||||+||+++ +.| +.. +..
T Consensus 185 ~~GDGa~~eG~f~EalN~A~~~~lPvlfv~eNN~ya-ist-------~~~-------~~~-------------------- 229 (395)
T d2bfda1 185 YFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYA-IST-------PTS-------EQY-------------------- 229 (395)
T ss_dssp EEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEE-TTE-------EGG-------GTC--------------------
T ss_pred ccCCCCccchhHHHHHHHHhhcCCceEEEEEecccc-ccc-------ccc-------hhh--------------------
Confidence 999999999999999999999999999999999983 222 111 000
Q ss_pred cchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEEeccCCCccc
Q 004968 300 RGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL--GSMGPVLVHVVTEENRRAEDT 375 (721)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~--~~~~P~lI~v~T~kg~G~~~a 375 (721)
...+...+++++|+.++ .|||+|+.++.++++++.+. ..++|++||+.|.+-.++...
T Consensus 230 -----------------~~~~i~~ra~~~gi~~~-~vDG~Dv~aV~~a~~~A~~~~R~g~gP~lIE~~TyR~~~Hs~~ 289 (395)
T d2bfda1 230 -----------------RGDGIAARGPGYGIMSI-RVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTS 289 (395)
T ss_dssp -----------------SSSTTGGGTGGGTCEEE-EEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECCCCC--CC-
T ss_pred -----------------cchhHHHhhhcccccee-EEecCcHHHHHHHHHHhhhhhhccCCceEEEEeeecCCCCCCc
Confidence 00112456789999998 78999999988877655331 147899999999985455433
|
| >d2ozlb2 c.48.1.2 (B:192-329) E1-beta subunit of pyruvate dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TK C-terminal domain-like superfamily: TK C-terminal domain-like family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain domain: E1-beta subunit of pyruvate dehydrogenase, C-domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.2e-24 Score=202.79 Aligned_cols=134 Identities=23% Similarity=0.251 Sum_probs=121.0
Q ss_pred eecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEcCCC-CCChH
Q 004968 576 IEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-IGGFG 654 (721)
Q Consensus 576 ~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~~-~gG~g 654 (721)
+|+||++++++|+|+|||+||+|++.|++|++.|+++||+++|||++|++|||.+.+.++++++++++||||+. .||+|
T Consensus 2 ipiGK~~i~~~G~ditiis~G~~~~~al~aa~~L~~~gi~~~vid~~~lkPld~~~i~~~~~k~~~iivvee~~~~gG~g 81 (138)
T d2ozlb2 2 IPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVG 81 (138)
T ss_dssp CCTTCCEEEECCSSEEEEECSTHHHHHHHHHHHHHTTTCCEEEEECCEEETCCHHHHHHHHHHHSCEEEECSSCSTTCHH
T ss_pred ccCCeeEEEEeCCCEEEEEccHHHHhHHHHhhhhcccCcceEEEEeccccCCcchhhhhhhccccceEEeecccccchHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999998 79999
Q ss_pred HHHHHHHHhcCCC-CCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhh
Q 004968 655 SHVSHFIALDGLL-DSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 711 (721)
Q Consensus 655 s~v~~~l~~~~~~-~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 711 (721)
+++.+.+.+++.+ ..+.++++++.||.|+++++ .+.+++.+++++|+++++++++
T Consensus 82 s~i~~~l~e~~~~~~l~~~v~ri~~~d~~ip~~~--~le~~~~~~~~~I~~~i~~~ln 137 (138)
T d2ozlb2 82 AEICARIMEGPAFNFLDAPAVRVTGADVPMPYAK--ILEDNSIPQVKDIIFAIKKTLN 137 (138)
T ss_dssp HHHHHHHHHSTTGGGCSSCCEEECCCSSCCCSSH--HHHHTTSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhhhhccCccEEEccCCcCCCccH--HHHHHhCcCHHHHHHHHHHHcC
Confidence 9999999987642 33567899999999999874 3445566699999999999875
|
| >d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Branched-chain alpha-keto acid dehydrogenase, PP module species: Thermus thermophilus [TaxId: 274]
Probab=99.91 E-value=1e-23 Score=226.09 Aligned_cols=228 Identities=16% Similarity=0.137 Sum_probs=162.7
Q ss_pred cCCCCHHHHHHHHHHH---HHH---HHHh--HhcCCCCCCCcccHHHHHHHHhcccCCC-CcEEEecCCchHHHHHHHhC
Q 004968 91 LKSLTIKELKQLAVEI---RSE---LSSI--VSKTEKSLKSSLAAVELTVALHHVFHAP-VDKILWDVGEQTYAHKILTG 161 (721)
Q Consensus 91 ~~~~~~~~l~~la~ei---R~~---~~~~--~~~~~Gh~~sslg~vel~~aL~~vf~~p-~D~iv~d~GH~~y~h~~ltG 161 (721)
..+|+.++|.++-+.+ |.+ +... -++. |.++++.|+-.+.+++-..+. | .|+++. .||.++|.+..|
T Consensus 25 ~~~ls~e~l~~~yr~M~~~R~~ee~~~~l~~~g~~-~~~~~~~GqEA~~vg~~~al~-~~~D~~~~--~yR~h~~~la~G 100 (362)
T d1umda_ 25 PLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKT-SFIAPAAGHEAAQVAIAHAIR-PGFDWVFP--YYRDHGLALALG 100 (362)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-SCCCCCTTCHHHHHHHHHHSC-TTTSEEEC--CTTTHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc-ceeeCCCCHHHHHHHHHHHcC-CCCCeEEe--ccccHHHHHHHH
Confidence 3557888887775443 422 2222 2233 677899998555555544444 5 599998 899999999999
Q ss_pred chhhhHHHHhhCCCCCCCCC-CCCCC------CCcC-cCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHH
Q 004968 162 RRSLIHTLRKKDGISGYTSR-SESEY------DPFN-AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYE 233 (721)
Q Consensus 162 r~~~~~~~r~~ggl~G~~~~-~es~~------d~~~-~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~E 233 (721)
....-.....+|...|+..+ ..|.| .+++ ++++|.++|.|+|+|+|.++++.++.+||++|||++++|.+||
T Consensus 101 ~~~~~~~ae~~gk~~g~~~Grggs~H~~~~~~~~~~~~~ivg~~~p~a~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~E 180 (362)
T d1umda_ 101 IPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYA 180 (362)
T ss_dssp CCHHHHHHHHHTBTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTTHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHH
T ss_pred hhHHHHHHHHhcccCCCcccccccccccccccCcccccccccccchHHHHHHHhhhcccccceeeeeccCCcccCCchHH
Confidence 74432222234444555443 23433 3343 6899999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHh
Q 004968 234 AMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYA 313 (721)
Q Consensus 234 aln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~ 313 (721)
+||+|+.|++|+||||+||+|+ +.| +.. +..
T Consensus 181 aln~A~~~~lPvifv~eNN~~a-ist-------~~~-------~~~---------------------------------- 211 (362)
T d1umda_ 181 GINFAAVQGAPAVFIAENNFYA-ISV-------DYR-------HQT---------------------------------- 211 (362)
T ss_dssp HHHHHHHTTCSEEEEEEECSEE-TTE-------EHH-------HHC----------------------------------
T ss_pred HHHHhhhccCCeeeeeeecccc-ccc-------ccc-------ccc----------------------------------
Confidence 9999999999999999999983 222 111 000
Q ss_pred hcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHh--cCCCCCEEEEEEEeccCCCccc
Q 004968 314 RGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVAS--LGSMGPVLVHVVTEENRRAEDT 375 (721)
Q Consensus 314 ~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~--~~~~~P~lI~v~T~kg~G~~~a 375 (721)
-.++...++++||+.++ .|||+|+.++.++++++.+ .+.++|++||+.|.+-.|+...
T Consensus 212 ---~~~~~~~~a~~~gi~~~-~vDGnDv~~v~~a~~~Ai~~~R~g~gP~lIE~~tyR~~gHs~~ 271 (362)
T d1umda_ 212 ---HSPTIADKAHAFGIPGY-LVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGPHSSA 271 (362)
T ss_dssp ---SSSCSGGGGGGTTSCEE-EEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCCSCSSTT
T ss_pred ---ccchhhhhhhhheeeee-EeccchHHHHHHHHHHHHHHHHhcCCCEEEEcccccccCCCcc
Confidence 00112456788999998 7899999888877765432 1257899999999998887654
|
| >d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: 2-oxoisovalerate dehydrogenase (E1B), PP module species: Pseudomonas putida [TaxId: 303]
Probab=99.91 E-value=2.2e-24 Score=233.38 Aligned_cols=229 Identities=14% Similarity=0.077 Sum_probs=161.9
Q ss_pred cCCCCHHHHHHHHHHH---HHH-----HHHhHhcCCCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHHhCc
Q 004968 91 LKSLTIKELKQLAVEI---RSE-----LSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGR 162 (721)
Q Consensus 91 ~~~~~~~~l~~la~ei---R~~-----~~~~~~~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr 162 (721)
..+|+.++|.++-+.+ |.+ .++.-++. |...++.|+-.+.++.-..+ .++|+++. .|+.++|.+..|.
T Consensus 68 ~~~l~~e~l~~~yr~M~~~R~~d~~~~~l~rqG~i-~~~~~~~GqEA~~vg~~~aL-~~~D~~f~--~yR~~g~~larG~ 143 (407)
T d1qs0a_ 68 AEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKM-SFYMQSLGEEAIGSGQALAL-NRTDMCFP--TYRQQSILMARDV 143 (407)
T ss_dssp GSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-SCCCCCTTTHHHHHHHHHHS-CTTSEEEC--CSSCHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-cccCCCCChHHHHHHHHHhC-CCCCEEEe--cccCHHHHHHHHh
Confidence 4578888888775443 322 22222344 55677999833333333333 58999998 9999999999998
Q ss_pred hhhhHHHHhhCCCCCCCCCC-CCCC------CCcC-cCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHH
Q 004968 163 RSLIHTLRKKDGISGYTSRS-ESEY------DPFN-AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEA 234 (721)
Q Consensus 163 ~~~~~~~r~~ggl~G~~~~~-es~~------d~~~-~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ea 234 (721)
...-....-+|...|..++. .|.| .+++ +|++|++++.|+|+|+|.|++++++.+||++|||++++|.+||+
T Consensus 144 ~~~~~~~e~~g~~~g~~~Gr~~~~h~~~~~~~~~~~s~~vg~q~p~AvG~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ea 223 (407)
T d1qs0a_ 144 SLVEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTA 223 (407)
T ss_dssp CHHHHHHHHHTCTTCTTTTCSCTTCCCBGGGTBCCCCSSSSHHHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHH
T ss_pred hHHHHHHHHhhccCCCCCCCCccccccccccceeccccccccccchhhhhHHHHhhccCcceecccccccccccchHHHH
Confidence 54322223345555655532 2432 3343 68999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhh
Q 004968 235 MSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYAR 314 (721)
Q Consensus 235 ln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~ 314 (721)
||+|+.|++|+||||+||+|. +.|. ... .+.
T Consensus 224 lN~A~~~~lPvifv~eNN~~a-ist~-------~~~-------~~~---------------------------------- 254 (407)
T d1qs0a_ 224 LTFAHVYRAPVILNVVNNQWA-ISTF-------QAI-------AGG---------------------------------- 254 (407)
T ss_dssp HHHHHHHTCCEEEEEEECSEE-TTEE-------GGG-------GTT----------------------------------
T ss_pred HHHHhccCcceEEEEEEeccc-cccc-------chh-------hhc----------------------------------
Confidence 999999999999999999983 2221 100 000
Q ss_pred cccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEEeccCCCccc
Q 004968 315 GMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL--GSMGPVLVHVVTEENRRAEDT 375 (721)
Q Consensus 315 ~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~--~~~~P~lI~v~T~kg~G~~~a 375 (721)
........++++|+.++ .|||+|+.+++++++++.+. +..||++||+.|.+-.|+...
T Consensus 255 --~~~~~~~ra~~~Gi~~~-~VDGnD~~avy~a~~~A~e~aR~g~gP~lIE~~TyR~~gHs~s 314 (407)
T d1qs0a_ 255 --ESTTFAGRGVGCGIASL-RVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTS 314 (407)
T ss_dssp --TTCCSTHHHHHTTCEEE-EEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCCSCSSTT
T ss_pred --cchhHHHHHHhcCcceE-EeccccHHHHHHHHHHHHHHHhcCCCceEEEEeeecCCCCCcc
Confidence 00011335668899998 78999998888777665331 257899999999999888654
|
| >d1ik6a2 c.48.1.2 (A:192-326) E1-beta subunit of pyruvate dehydrogenase, C-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TK C-terminal domain-like superfamily: TK C-terminal domain-like family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain domain: E1-beta subunit of pyruvate dehydrogenase, C-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.90 E-value=1.2e-24 Score=202.22 Aligned_cols=132 Identities=27% Similarity=0.322 Sum_probs=110.9
Q ss_pred cceecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEcCCC-CCC
Q 004968 574 IPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-IGG 652 (721)
Q Consensus 574 ~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~~-~gG 652 (721)
|.+++||++++|+|+|++||+||.|++.|++|++.|. ++++|||+||++|||++++.++++++++++||||+. .||
T Consensus 2 Y~~~~Gk~~ilr~G~dvtIi~~G~mv~~al~aa~~l~---~~~~vid~~~lkPlD~~~i~~~~~k~~~vvvvEe~~~~gG 78 (135)
T d1ik6a2 2 YVVEIGKARVAREGDDVTLVTYGAVVHKALEAAERVK---ASVEVVDLQTLNPLDFDTVLKSVSKTGRLIIAHDSPKTGG 78 (135)
T ss_dssp CCCCTTCCEEEECCSSEEEEECTTHHHHHHHHHHTSS---SCEEEEECCEEETTCHHHHHHHHHHHCCEEEEEEEESTTS
T ss_pred ceeeCCEEEEEEeCCcEEEEEeccchHHHHHHHHhhc---cchhhhccccccCCChHHHhHHHhccCCcEEEecCccccc
Confidence 6789999999999999999999999999999998774 689999999999999999999999999999999997 799
Q ss_pred hHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhh
Q 004968 653 FGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 711 (721)
Q Consensus 653 ~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 711 (721)
||++|++++.++++...+.+++++|+||.|.+++ .+.+.+++|+++|+++++++|+
T Consensus 79 ~gs~i~~~l~e~~~~~l~~~~~~ig~~d~~~~~~---~le~~~~l~~~~I~~~i~~~l~ 134 (135)
T d1ik6a2 79 LGAEVRALVAEKALDRLTAPVIRLAGPDVPQSPI---AADAAYAPTVERIIKAIEYVMR 134 (135)
T ss_dssp HHHHHHHHHHHHSGGGCSSCCEEEEECCCC---------------CHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhcccCCCeEEEcCCCcCCCcH---HHHHHhCcCHHHHHHHHHHHhc
Confidence 9999999999998744467889999999876543 4567889999999999999875
|
| >d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: E1-beta subunit of pyruvate dehydrogenase (PP module) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=7.7e-23 Score=219.30 Aligned_cols=227 Identities=18% Similarity=0.142 Sum_probs=157.3
Q ss_pred cCCCCHHHHHHHHHHH---HHH---HH--HhHhcCCCCCCCcccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHHhCc
Q 004968 91 LKSLTIKELKQLAVEI---RSE---LS--SIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGR 162 (721)
Q Consensus 91 ~~~~~~~~l~~la~ei---R~~---~~--~~~~~~~Gh~~sslg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr 162 (721)
-.+|+.++|.++-+.+ |.+ +. +.-++..|..+++.|+-.+.+++-..++ ++|+++. .||.++|.+..|.
T Consensus 24 ~~~lske~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~h~~~GqEa~~vg~~~~l~-~~D~~~~--~yR~~~~~la~G~ 100 (361)
T d2ozla1 24 TTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGIN-PTDHLIT--AYRAHGFTFTRGL 100 (361)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTSC-TTSEEEC--CSCCHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcccccCCCCHHHHHHHHHHhCC-ccCEecc--cccchheeeeecc
Confidence 3446677776654333 322 22 2223446888899998555555544444 7899888 8999999999997
Q ss_pred hhhhHHHHhhCCCCCCCCCC-CCCC----CCcC-cCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHH
Q 004968 163 RSLIHTLRKKDGISGYTSRS-ESEY----DPFN-AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMS 236 (721)
Q Consensus 163 ~~~~~~~r~~ggl~G~~~~~-es~~----d~~~-~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn 236 (721)
...-....-+|...|..++. .+.| +.++ ++++|+++|.|+|+|+|.|++++++.|||++|||++++|.+||+||
T Consensus 101 ~~~~~~ae~~gk~~g~~~G~~~~~h~~~~~~~~~~~ivg~~~p~A~G~A~a~k~~~~~~v~~~~~GDGa~~eG~f~Ealn 180 (361)
T d2ozla1 101 SVREILAELTGRKGGCAKGKGGSMHMYAKNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYN 180 (361)
T ss_dssp CHHHHHHHHTTCTTSTTTTSSCTTCCCBTTBCCCCCSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHHH
T ss_pred cchhhhhhccCCccccccccccccccccccccCccccccccchhHHHHHHHhhhccCCCeEEEEecCCCccCcchhhhhh
Confidence 43322222244444544432 2333 2344 6999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcc
Q 004968 237 NAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM 316 (721)
Q Consensus 237 ~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 316 (721)
+|+.|++|+||||+||++. +.| +.. +.+.
T Consensus 181 ~A~~~~lPvifv~eNN~ya-ist-------~~~-------~~~~------------------------------------ 209 (361)
T d2ozla1 181 MAALWKLPCIFICENNRYG-MGT-------SVE-------RAAA------------------------------------ 209 (361)
T ss_dssp HHHHTTCCEEEEEEECSEE-TTE-------EHH-------HHCS------------------------------------
T ss_pred hhhhccCceEEEEEeCCcc-cCC-------Cch-------hccc------------------------------------
Confidence 9999999999999999983 222 111 0000
Q ss_pred cCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEEeccCCCccc
Q 004968 317 IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL--GSMGPVLVHVVTEENRRAEDT 375 (721)
Q Consensus 317 ~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~--~~~~P~lI~v~T~kg~G~~~a 375 (721)
.......+.|+..+ .|||+|+.++.++++++.+. ..++|++||+.|.+-.|++..
T Consensus 210 ---~~~~~~~~~~~~~~-~vdGnD~~av~~a~~~A~~~~R~g~gP~liE~~TyR~~gHs~~ 266 (361)
T d2ozla1 210 ---STDYYKRGDFIPGL-RVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHEMS 266 (361)
T ss_dssp ---CCCGGGTTTTSCEE-EEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCSSCSSTT
T ss_pred ---cccccccccccceE-EeccCCchHHHHHHHHHHHHHhccCCCEEEEEeeecCCCCccc
Confidence 00011223456665 68999999888777665321 257899999999998887543
|
| >d1qs0b2 c.48.1.2 (B:206-339) 2-oxoisovalerate dehydrogenase E1b, C-domain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TK C-terminal domain-like superfamily: TK C-terminal domain-like family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain domain: 2-oxoisovalerate dehydrogenase E1b, C-domain species: Pseudomonas putida [TaxId: 303]
Probab=99.89 E-value=1.2e-23 Score=194.58 Aligned_cols=131 Identities=21% Similarity=0.246 Sum_probs=118.6
Q ss_pred cceecCceEEEEeCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEcCCC-CCC
Q 004968 574 IPIEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-IGG 652 (721)
Q Consensus 574 ~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~~-~gG 652 (721)
|.+++||++++|+|+|+|||+||.|++.|++|++ ++||+++|||++|++|||.+.+.++++++++++|+||+. .||
T Consensus 2 y~~piGk~~v~~~G~Ditiis~G~~v~~a~~a~~---~~gi~~~vidl~~l~PlD~~~i~~~~~kt~~vi~vEe~~~~gG 78 (134)
T d1qs0b2 2 YTVPLDKAAITRPGNDVSVLTYGTTVYVAQVAAE---ESGVDAEVIDLRSLWPLDLDTIVESVKKTGRCVVVHEATRTCG 78 (134)
T ss_dssp CCCCTTCCCEEECCSSCEEEECTTHHHHHHHHHH---HHCCCCEEEECSEEESCCHHHHHHHHHHHSCEEEEESSCSTTS
T ss_pred eeecCCEEEEEEeCCCEEEEEeehHHHHHHHHHh---hcCcchhheeccccCCcchhhHHHHHhCCceEEEEecCccccc
Confidence 5678999999999999999999999999999986 469999999999999999999999999999999999998 799
Q ss_pred hHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhh
Q 004968 653 FGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 711 (721)
Q Consensus 653 ~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 711 (721)
+|++|++.+.++++...+.++.++|.||.|.+++.- +.+.+++++|+++|+++++
T Consensus 79 ~gs~i~~~l~e~~~~~L~~~v~ri~~~d~p~p~~~e----~~~~~~~~~I~~~i~~ll~ 133 (134)
T d1qs0b2 79 FGAELVSLVQEHCFHHLEAPIERVTGWDTPYPHAQE----WAYFPGPSRVGAALKKVME 133 (134)
T ss_dssp THHHHHHHHHHHSSSSCCSCCEEEECCSSCCCSTTH----HHHSCCHHHHHHHHHHSSC
T ss_pred hHHHHHHHHHHhhhhccCCCeEEECCCCcCCCCChH----HHhCcCHHHHHHHHHHHhC
Confidence 999999999999874446688999999999998862 2356899999999999874
|
| >d1gpua3 c.48.1.1 (A:535-680) Transketolase (TK), C-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TK C-terminal domain-like superfamily: TK C-terminal domain-like family: Transketolase C-terminal domain-like domain: Transketolase (TK), C-domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.78 E-value=3.6e-19 Score=166.07 Aligned_cols=121 Identities=16% Similarity=0.185 Sum_probs=106.4
Q ss_pred ceEEEEeCC--cEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccc---cHHHHHHHhccCCeEEEEcCCCCCChH
Q 004968 580 KGKVLVEGK--DVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPL---DIKLVRELCQNHTFLITVEEGSIGGFG 654 (721)
Q Consensus 580 k~~vl~eG~--dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~Pl---D~e~i~~l~~~~~~vvvvEe~~~gG~g 654 (721)
.+|+++++. |++||++|+++..|++|++.|+++||+++||+++|++|| |.+...++...+..++++|.+...||.
T Consensus 11 GaYiL~~~~~pdvtiiAsGsev~~AleAa~~L~~~GI~v~Vvs~ps~~~~~~q~~~~~~~~~~~~~~~v~iEa~~~~gw~ 90 (146)
T d1gpua3 11 GGYVLQDVANPDIILVATGSEVSLSVEAAKTLAAKNIKARVVSLPDFFTFDKQPLEYRLSVLPDNVPIMSVEVLATTCWG 90 (146)
T ss_dssp SCEEEECCSSCSEEEEECTHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHSCHHHHHHHSCSSSCEEEECSSCSTTGG
T ss_pred cCEEEeeCCCCCEEEEEeCHHHHHHHHHHHHHHhhccCccEEEeehhhHHHhhhHHHhhhhcccccceeeEEeccccchh
Confidence 368899875 999999999999999999999999999999999999999 667777777777788999999877775
Q ss_pred HHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhhcchhh
Q 004968 655 SHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTREA 716 (721)
Q Consensus 655 s~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~~~~~~ 716 (721)
.. ....+|+ |+|+.+|+.++|+++||||+++|+++++++|+++|+.
T Consensus 91 ~~---------------~~~~iGi-d~FG~Sg~~~~L~~~fGlt~~~I~~~v~~~L~~~k~~ 136 (146)
T d1gpua3 91 KY---------------AHQSFGI-DRFGASGKAPEVFKFFGFTPEGVAERAQKTIAFYKGD 136 (146)
T ss_dssp GT---------------CSEEECC-CSCCCCSCHHHHHHHTTCSHHHHHHHHHHHHHHHTTC
T ss_pred hc---------------cCceECc-ccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhcCC
Confidence 21 1246898 9999999999999999999999999999999877653
|
| >d2r8oa3 c.48.1.1 (A:528-663) Transketolase (TK), C-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TK C-terminal domain-like superfamily: TK C-terminal domain-like family: Transketolase C-terminal domain-like domain: Transketolase (TK), C-domain species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=2.6e-18 Score=159.11 Aligned_cols=120 Identities=21% Similarity=0.258 Sum_probs=93.7
Q ss_pred cCc-eEEEEeCC---cEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHhcc----CCeEEEEcCCC
Q 004968 578 IGK-GKVLVEGK---DVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQN----HTFLITVEEGS 649 (721)
Q Consensus 578 ~gk-~~vl~eG~---dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~----~~~vvvvEe~~ 649 (721)
++| +|++++++ |++||++|+++.+|++|++.|+++||+++||+++|++|||++......+. .....++|
T Consensus 9 i~kG~Yvl~~~~~~~dv~iiasGs~v~~aleAa~~L~~~gI~~~Vi~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~--- 85 (136)
T d2r8oa3 9 IARGGYVLKDCAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLPKAVTARVAVE--- 85 (136)
T ss_dssp GGGSCEEEECCSSSCSEEEEECGGGHHHHHHHHHHHHHHTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEEE---
T ss_pred hhccCEEEeecCCCCCEEEEeeccchHHHHHHHHHHHhcCCCceEeechhhhHHHHhHHHHHHHhcccccccceeEE---
Confidence 444 47888765 99999999999999999999999999999999999999988755332222 12223333
Q ss_pred CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHh
Q 004968 650 IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLL 710 (721)
Q Consensus 650 ~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l 710 (721)
+|++..+..++..++ ..+++ |+|+.||++++|+++||||+++|+++|+++|
T Consensus 86 -~g~~~~~~~~~~~~~--------~~~gi-d~Fg~Sg~~~~L~~~~Gl~~~~I~~~i~~~L 136 (136)
T d2r8oa3 86 -AGIADYWYKYVGLNG--------AIVGM-TTFGESAPAELLFEEFGFTVDNVVAKAKELL 136 (136)
T ss_dssp -EEEGGGGHHHHTTSS--------EEEEE-CSCCCSSCHHHHHHHTTCSHHHHHHHHHHHC
T ss_pred -ecCcchHHHhhcCCC--------ccccc-ccCCCCCCHHHHHHHcCCCHHHHHHHHHhhC
Confidence 455555556665432 35666 9999999999999999999999999999875
|
| >d2ez9a3 c.36.1.9 (A:366-593) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate oxidase species: Lactobacillus plantarum [TaxId: 1590]
Probab=99.68 E-value=1e-17 Score=168.31 Aligned_cols=172 Identities=12% Similarity=0.114 Sum_probs=116.9
Q ss_pred HHHHHhcccCCCCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHH
Q 004968 130 LTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVAR 208 (721)
Q Consensus 130 l~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~ 208 (721)
++.+|..++ .+++.++.|.| |..|+..++.-+. ++++.. ..+.|++|+++|+|+|+++|
T Consensus 11 v~~~l~~~l-~~d~ivv~D~G~~~~~~~~~~~~~~-----p~~~~~-------------~~~~g~mG~glpaAiGa~la- 70 (228)
T d2ez9a3 11 VLRAVNKIA-EPDAIYSIDVGDINLNANRHLKLTP-----SNRHIT-------------SNLFATMGVGIPGAIAAKLN- 70 (228)
T ss_dssp HHHHHHHHC-CTTCEEEECSSHHHHHHHHHCCCCT-----TCEEEC-------------CCSSCCTTCHHHHHHHHHHH-
T ss_pred HHHHHHhhC-CCCeEEEEcCcHHHHHHHHHccCCC-----Cceeee-------------ecccccccccchhhhhhhhh-
Confidence 444444433 35677788999 5556664433111 111110 12458899999999999998
Q ss_pred HHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHH
Q 004968 209 DIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLR 288 (721)
Q Consensus 209 ~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r 288 (721)
.++++|||++|||+|+ |+.++|.+|.++++|+++||.||+. +|.+.. .++...
T Consensus 71 ---~p~~~Vv~i~GDG~f~--m~~~EL~Ta~~~~lpi~~vV~NN~~-------------yg~i~~-~q~~~~-------- 123 (228)
T d2ez9a3 71 ---YPERQVFNLAGDGGAS--MTMQDLATQVQYHLPVINVVFTNCQ-------------YGWIKD-EQEDTN-------- 123 (228)
T ss_dssp ---CTTSCEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEECSB-------------CHHHHH-HHHHHC--------
T ss_pred ---hccceeEeecCCcccc--ccchhhhhhccccCceEEEEecccc-------------chhhhh-hhhhcc--------
Confidence 4589999999999995 8999999999999999999999985 343311 000000
Q ss_pred HHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEec
Q 004968 289 EVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEE 368 (721)
Q Consensus 289 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~k 368 (721)
-.+..+. ++-.++...++++||+++..+ ++.++|..+++++++...++|+||+|.+.+
T Consensus 124 -----~~~~~~~--------------~l~~~d~~~iA~a~G~~~~~v---~~~~el~~al~~a~al~~~~p~lIev~vd~ 181 (228)
T d2ez9a3 124 -----QNDFIGV--------------EFNDIDFSKIADGVHMQAFRV---NKIEQLPDVFEQAKAIAQHEPVLIDAVITG 181 (228)
T ss_dssp -----SSCCCSS--------------BCCCCCHHHHHHHTTCEEEEE---CBGGGHHHHHHHHHHHTTTSCEEEEEECCC
T ss_pred -----cCCcccc--------------cccCccHHhhccccccceEEe---CCHHHHHHHHHHHHHHcCCCeEEEEEEECC
Confidence 0000111 122345677899999999876 788899999988765546899999999976
Q ss_pred cC
Q 004968 369 NR 370 (721)
Q Consensus 369 g~ 370 (721)
-.
T Consensus 182 d~ 183 (228)
T d2ez9a3 182 DR 183 (228)
T ss_dssp CC
T ss_pred CC
Confidence 44
|
| >d1ybha3 c.36.1.9 (A:460-667) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Acetohydroxyacid synthase catalytic subunit species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=99.66 E-value=5.9e-17 Score=160.62 Aligned_cols=169 Identities=17% Similarity=0.170 Sum_probs=114.6
Q ss_pred CCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEE
Q 004968 141 PVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVT 219 (721)
Q Consensus 141 p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~Vva 219 (721)
+++.|+.|+| |+.|+++.+.-+ ..+++. ...+.|.+|.++|+|+|+++| .++++|||
T Consensus 18 ~d~ivv~D~G~~~~~~~~~~~~~-----~~~~~~-------------~~~~~g~mG~glpaaiGa~~A----~p~~~Vi~ 75 (208)
T d1ybha3 18 GKAIISTGVGQHQMWAAQFYNYK-----KPRQWL-------------SSGGLGAMGFGLPAAIGASVA----NPDAIVVD 75 (208)
T ss_dssp TCCEEEECSSHHHHHHHHSCCCS-----STTSEE-------------CCCSSCCTTCHHHHHHHHHHH----CTTSCEEE
T ss_pred cCeEEEEcCcHHHHHHHHhcccC-----CCceec-------------cccccccchhhhhhHHHHHhc----CCCCcEEE
Confidence 4566678999 777777433211 111111 112458899999999999998 46999999
Q ss_pred EEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccC
Q 004968 220 VISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIG 299 (721)
Q Consensus 220 viGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g 299 (721)
++|||+|+ |+..+|.+|.++++|+++||.||+. +|.+. ..++... ..........
T Consensus 76 i~GDGsf~--m~~~El~Ta~r~~lpi~iiV~NN~~-------------~g~i~-~~q~~~~---------~~~~~~~~~~ 130 (208)
T d1ybha3 76 IDGDGSFI--MNVQELATIRVENLPVKVLLLNNQH-------------LGMVM-QWEDRFY---------KANRAHTFLG 130 (208)
T ss_dssp EEEHHHHH--HTTTHHHHHHHTTCCEEEEEEECSB-------------CHHHH-HHHHHHS---------TTCCCSCBCS
T ss_pred EccCCchh--hhhhhHHHHHHhCCCEEEEEEeccc-------------cccce-ehhhhcc---------cccccccccc
Confidence 99999996 8889999999999999999999985 34331 1111100 0000000000
Q ss_pred cchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEeccCC
Q 004968 300 RGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRR 371 (721)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G 371 (721)
++. ......++...+++++|+++..+ .+.++|.++|+++.+ .++|+||+|.+.+..-
T Consensus 131 ~~~----------~~~~~~pd~~~iA~a~G~~~~~v---~~~~el~~al~~a~~--~~~p~lIeV~id~~~~ 187 (208)
T d1ybha3 131 DPA----------QEDEIFPNMLLFAAACGIPAARV---TKKADLREAIQTMLD--TPGPYLLDVICPHQEH 187 (208)
T ss_dssp CGG----------GTTSCSSCHHHHHHHTTCCEEEE---CBHHHHHHHHHHHHH--SSSCEEEEEECCTTCC
T ss_pred ccc----------ccCCCCCCHHHhhccCCceEEEc---CCHHHHHHHHHHHHh--CCCCEEEEEEECCCCc
Confidence 000 01122245567889999999876 799999999999998 5899999999976543
|
| >d2ihta3 c.36.1.9 (A:375-572) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Carboxyethylarginine synthase species: Streptomyces clavuligerus [TaxId: 1901]
Probab=99.65 E-value=9.3e-17 Score=157.96 Aligned_cols=128 Identities=15% Similarity=0.173 Sum_probs=95.6
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|++|+++|+|+|+++|. ++++|||++|||++. |..++|.+|+++++|+++||.||+. +|
T Consensus 60 ~~g~mG~~lp~aiGa~~a~----p~~~Vv~i~GDGsf~--~~~~el~t~~~~~lpi~ivV~NN~~-------------~g 120 (198)
T d2ihta3 60 GCSSFGYGIPAAIGAQMAR----PDQPTFLIAGDGGFH--SNSSDLETIARLNLPIVTVVVNNDT-------------NG 120 (198)
T ss_dssp SSCCTTCHHHHHHHHHHHS----TTSCEEEEEEHHHHH--HTGGGHHHHHHHTCCCEEEEEECSB-------------CH
T ss_pred CcccchhHHHHHHHHhhhh----cccceEeeccccccc--ccchhhhhhhhhhhhhhHHHhhccc-------------cc
Confidence 4588999999999999984 589999999999995 7888999999999999999988885 23
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~ 349 (721)
.+.. ++........ .....+-.++...+++++|+.++.+ ++.++|.++|+
T Consensus 121 ~i~~----------~q~~~~~~~~-----------------~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~al~ 170 (198)
T d2ihta3 121 LIEL----------YQNIGHHRSH-----------------DPAVKFGGVDFVALAEANGVDATRA---TNREELLAALR 170 (198)
T ss_dssp HHHH----------HHHHHHSSCC-----------------GGGTBCCCCCHHHHHHHTTCEEEEC---CSHHHHHHHHH
T ss_pred eEee----------eecccccccc-----------------ccccccCCcchhhhccccCceEEEe---CCHHHHHHHHH
Confidence 2210 1110000000 0001112245567899999999865 78999999999
Q ss_pred HHHhcCCCCCEEEEEEEec
Q 004968 350 EVASLGSMGPVLVHVVTEE 368 (721)
Q Consensus 350 ~a~~~~~~~P~lI~v~T~k 368 (721)
++.+ .++|++|+|+|.+
T Consensus 171 ~a~~--~~~p~lIeV~vd~ 187 (198)
T d2ihta3 171 KGAE--LGRPFLIEVPVNY 187 (198)
T ss_dssp HHHT--SSSCEEEEEEBCC
T ss_pred HHHh--CCCCEEEEEEcCC
Confidence 9988 5899999999975
|
| >d1r9ja3 c.48.1.1 (A:527-669) Transketolase (TK), C-domain {Leishmania mexicana mexicana [TaxId: 44270]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TK C-terminal domain-like superfamily: TK C-terminal domain-like family: Transketolase C-terminal domain-like domain: Transketolase (TK), C-domain species: Leishmania mexicana mexicana [TaxId: 44270]
Probab=99.64 E-value=4.2e-16 Score=144.37 Aligned_cols=119 Identities=15% Similarity=0.120 Sum_probs=99.8
Q ss_pred eEEEEeC--CcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCcccccc---HHHHHHHhccCCeEEEEcCCCCCChHH
Q 004968 581 GKVLVEG--KDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLD---IKLVRELCQNHTFLITVEEGSIGGFGS 655 (721)
Q Consensus 581 ~~vl~eG--~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD---~e~i~~l~~~~~~vvvvEe~~~gG~gs 655 (721)
+|+++++ .|++|+++|++|..|++|++.|+++ |+++||+++|+.+|+ .+...+++.+...++++|.+...||..
T Consensus 10 aYil~~~~~~dvtiiAtGseV~~AleAA~~L~~~-I~~~VVS~ps~~~~~~~~~~y~~~vl~~~~~~v~vEa~~~~gw~~ 88 (143)
T d1r9ja3 10 AYSVVDVPDLQLVIVASGSEVSLAVDAAKALSGE-LRVRVVSMPCQELFDAQPDTYRQAVLPAGVPVVSVEAYVSFGWEK 88 (143)
T ss_dssp CEEEECCTTCSEEEEECGGGHHHHHHHHHHHTTT-CCEEEEECSCHHHHHTSCHHHHHHHSCTTSCEEEECSSCCTTGGG
T ss_pred CEEEeeCCCCCEEEEEccHHHHHHHHHHHHHHhh-cceeEeeeeehhhhhhhhHHHHHHhCCCcccceeeEeecccceee
Confidence 5788775 5799999999999999999999875 999999999887765 456667776666789999998777742
Q ss_pred HHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhhcchhh
Q 004968 656 HVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTREA 716 (721)
Q Consensus 656 ~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~~~~~~ 716 (721)
. .-..+|+ |+|+.+|+.++|+++||||+++|++++++++++.++.
T Consensus 89 ~---------------~~~~iGi-d~FG~Sg~~~~L~~~fGlt~e~Iv~~~~~ll~k~~~~ 133 (143)
T d1r9ja3 89 Y---------------SHAHVGM-SGFGASAPAGVLYKKFGITVEEVVRTGRELAKRFPDG 133 (143)
T ss_dssp T---------------CSEEESC-SSCCCSSCHHHHHHHTTCSHHHHHHHHHHHHHHSCTT
T ss_pred c---------------CCcEEec-CCccccCCHHHHHHHcCCCHHHHHHHHHHHHHHcCCC
Confidence 1 1135888 9999999999999999999999999999999876653
|
| >d1q6za3 c.36.1.9 (A:342-524) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Benzoylformate decarboxylase species: Pseudomonas putida [TaxId: 303]
Probab=99.62 E-value=1.6e-16 Score=154.30 Aligned_cols=126 Identities=25% Similarity=0.317 Sum_probs=92.5
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|.+|+++|+|+|+++| .++++|||++|||++. |..++|.+|+++++|+++||.||+. +|
T Consensus 58 ~~g~mG~~~p~AiGa~la----~p~~~vv~i~GDG~f~--~~~~el~ta~~~~lpv~~iV~nN~~-------------~g 118 (183)
T d1q6za3 58 AAGGLGFALPAAIGVQLA----EPERQVIAVIGDGSAN--YSISALWTAAQYNIPTIFVIMNNGT-------------YG 118 (183)
T ss_dssp TTCCTTSHHHHHHHHHHH----CTTSCEEEEEEHHHHT--TTGGGHHHHHHHTCCCEEEEEECSB-------------CH
T ss_pred cCCCcccchhHHHhhhhh----ccccceEEeccccccc--cccHHHHHHHHhCCCEEEEEEeccc-------------cc
Confidence 347899999999999998 4589999999999996 8888999999999998887777774 23
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~ 349 (721)
.+. +.++... . .+..+. ++-.++...++++||+++..+ ++.++|.++++
T Consensus 119 ~~~-~~~~~~~----------~---~~~~~~--------------~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~ 167 (183)
T d1q6za3 119 ALR-WFAGVLE----------A---ENVPGL--------------DVPGIDFRALAKGYGVQALKA---DNLEQLKGSLQ 167 (183)
T ss_dssp HHH-HHHHHHT----------C---CSCCSC--------------BCCCCCHHHHHHHHTCEEEEE---SSHHHHHHHHH
T ss_pred hhh-hhhhccc----------c---cCcccc--------------cCCCccHHHHHHHcCCEEEEE---CCHHHHHHHHH
Confidence 221 1110000 0 000010 111234466889999999865 68999999999
Q ss_pred HHHhcCCCCCEEEEEEEe
Q 004968 350 EVASLGSMGPVLVHVVTE 367 (721)
Q Consensus 350 ~a~~~~~~~P~lI~v~T~ 367 (721)
++.+ .++|+||||+|+
T Consensus 168 ~a~~--~~gp~lieV~T~ 183 (183)
T d1q6za3 168 EALS--AKGPVLIEVSTV 183 (183)
T ss_dssp HHHT--CSSCEEEEEEBC
T ss_pred HHHh--CCCcEEEEEEeC
Confidence 9987 589999999995
|
| >d1ovma3 c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Indole-3-pyruvate decarboxylase species: Enterobacter cloacae [TaxId: 550]
Probab=99.62 E-value=6.1e-16 Score=151.85 Aligned_cols=156 Identities=15% Similarity=0.139 Sum_probs=105.6
Q ss_pred CCCcEEEecCCchHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEE
Q 004968 140 APVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVT 219 (721)
Q Consensus 140 ~p~D~iv~d~GH~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~Vva 219 (721)
+++|.|+.|.|+.+|....+ -+|.+. ..+...+.|++|+++|+|+|+++|. ++++|||
T Consensus 19 ~~d~ivv~d~G~~~~~~~~~-----------------~~~~~~-~~~~~~~~g~mG~~l~~aiGa~la~----p~~~vv~ 76 (196)
T d1ovma3 19 RPGDIILADQGTSAFGAIDL-----------------RLPADV-NFIVQPLWGSIGYTLAAAFGAQTAC----PNRRVIV 76 (196)
T ss_dssp CTTCEEEECTTHHHHHHTTC-----------------CCCSSC-EEECCTTTCCTTHHHHHHHHHHHHC----TTSCEEE
T ss_pred CCCCEEEEcCCHhHHHHHHh-----------------ccCCCC-eEEeCCCCccccccchhhHHHHHhh----hccceec
Confidence 47889999999755433100 011110 1112235689999999999999984 5899999
Q ss_pred EEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccC
Q 004968 220 VISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIG 299 (721)
Q Consensus 220 viGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g 299 (721)
++|||+++ |..++|.+|.++++|+++||.||+.. |... ..+... ..|
T Consensus 77 i~GDG~f~--~~~~eL~ta~~~~l~i~iiV~nN~~~-------------~~~~-~~~~~~--~~~--------------- 123 (196)
T d1ovma3 77 LTGDGAAQ--LTIQELGSMLRDKQHPIILVLNNEGY-------------TVER-AIHGAE--QRY--------------- 123 (196)
T ss_dssp EEEHHHHH--HHTTHHHHHHHTTCCCEEEEEESSSC-------------HHHH-HHSCTT--CGG---------------
T ss_pred ccccccce--eecccccccccccccceEEEEecCcc-------------ccch-hhhccc--ccc---------------
Confidence 99999996 88899999999999998888888752 2110 000000 000
Q ss_pred cchHHHHHHHHHHhhcccCCCccceeeeeCc----eEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEecc
Q 004968 300 RGMHEWAAKVDEYARGMIGPQGSTLFEELGL----YYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEEN 369 (721)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~----~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg 369 (721)
.+.-.++...+++++|+ ++..+ ++.++|.++|+++++ .++|+||||+|.+.
T Consensus 124 --------------~~~~~~~~~~~a~~~g~~~~~~~~~v---~~~~el~~al~~a~~--~~gp~lIev~~~~~ 178 (196)
T d1ovma3 124 --------------NDIALWNWTHIPQALSLDPQSECWRV---SEAEQLADVLEKVAH--HERLSLIEVMLPKA 178 (196)
T ss_dssp --------------GCCCCCCGGGSTTTSCSSCCEEEEEE---CBHHHHHHHHHHHTT--CSSEEEEEEECCTT
T ss_pred --------------ccccccccchhHHhcCccccceeEEE---ecHHHHHHHHHHHHH--CCCcEEEEEEeChH
Confidence 01111234556777776 34434 689999999999987 58999999999765
|
| >d2djia3 c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate oxidase species: Aerococcus viridans [TaxId: 1377]
Probab=99.61 E-value=2.2e-16 Score=158.71 Aligned_cols=130 Identities=13% Similarity=0.125 Sum_probs=95.6
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|.+|+++|+|+|+++| .++++|||++|||+|+ |..++|.+|.++++|+++||.||+. +|
T Consensus 50 ~~g~mG~~lp~aiGa~~a----~p~~~vv~i~GDGsf~--m~~~eL~ta~~~~lpi~iiV~nN~~-------------~~ 110 (229)
T d2djia3 50 LFATMGIAIPGGLGAKNT----YPDRQVWNIIGDGAFS--MTYPDVVTNVRYNMPVINVVFSNTE-------------YA 110 (229)
T ss_dssp SSCCTTCHHHHHHHHHHH----CTTSCEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEECSB-------------CT
T ss_pred Ccccccccchhhhhhhhh----cccccccccccccccc--cccchhhhhhcccCCceEEEeCCch-------------hh
Confidence 458899999999999998 4689999999999995 8889999999999999999998885 23
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~ 349 (721)
.+.. .++. .. .+..+. ++..++...+++++|+.++.+ ++.++|.++++
T Consensus 111 ~i~~-~~~~-----------~~---~~~~~~--------------~~~~~d~~~lA~a~G~~~~~v---~~~~el~~al~ 158 (229)
T d2djia3 111 FIKN-KYED-----------TN---KNLFGV--------------DFTDVDYAKIAEAQGAKGFTV---SRIEDMDRVMA 158 (229)
T ss_dssp HHHH-HHHH-----------HC---SCCCSC--------------BCCCCCHHHHHHHTTSEEEEE---CBHHHHHHHHH
T ss_pred hhhH-HHHh-----------hc---CCCCcC--------------cCCCCChhhhhhccCccEEEE---ecHHHhHHHHH
Confidence 2211 0000 00 001111 122355677889999999866 68899999998
Q ss_pred HHHhc-CCCCCEEEEEEEeccC
Q 004968 350 EVASL-GSMGPVLVHVVTEENR 370 (721)
Q Consensus 350 ~a~~~-~~~~P~lI~v~T~kg~ 370 (721)
++.+. +.++|+||+|++.+..
T Consensus 159 ~A~~~~~~~~p~lIev~v~~~~ 180 (229)
T d2djia3 159 EAVAANKAGHTVVIDCKITQDR 180 (229)
T ss_dssp HHHHHHHTTCCEEEEEECCSCC
T ss_pred HHHHhcCCCCeEEEEEEeCCCC
Confidence 87532 1468999999997754
|
| >d1t9ba3 c.36.1.9 (A:461-687) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Acetohydroxyacid synthase catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.61 E-value=7.6e-16 Score=154.39 Aligned_cols=176 Identities=18% Similarity=0.204 Sum_probs=120.3
Q ss_pred cHHHHHHHHhcccC-CCCcEE-EecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHH
Q 004968 126 AAVELTVALHHVFH-APVDKI-LWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGL 202 (721)
Q Consensus 126 g~vel~~aL~~vf~-~p~D~i-v~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~ 202 (721)
.-..++.+|..+++ ..+|.| +.|+| |+.|+..++.-+.. +++ ....+.|.+|+++|+|+
T Consensus 12 ~P~~~~~~L~~~~~~~~~d~ivv~D~G~~~~~~~~~~~~~~p-----~~~-------------i~~~~~g~mG~~~~aai 73 (227)
T d1t9ba3 12 KPQTVIKKLSKVANDTGRHVIVTTGVGQHQMWAAQHWTWRNP-----HTF-------------ITSGGLGTMGYGLPAAI 73 (227)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEEEECSSHHHHHHHHHSCCCST-----TCE-------------ECCCSSCCTTCHHHHHH
T ss_pred CHHHHHHHHHHhcccCCCCEEEEECCcHHHHHHHHHcCCCCC-----ceE-------------eeecccccchhhHHHHH
Confidence 33445556655544 234555 57999 67777644332111 111 11135589999999999
Q ss_pred HHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhch
Q 004968 203 GMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSK 282 (721)
Q Consensus 203 G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~ 282 (721)
|+++| .++++|||++|||+|+ |...+|.+|.++++|+++||.||+. +|.+..
T Consensus 74 Ga~lA----~p~r~Vv~i~GDGsf~--m~~~EL~Ta~r~~l~i~iiV~nN~~-------------~g~~~~--------- 125 (227)
T d1t9ba3 74 GAQVA----KPESLVIDIDGDASFN--MTLTELSSAVQAGTPVKILILNNEE-------------QGMVTQ--------- 125 (227)
T ss_dssp HHHHH----CTTSEEEEEEEHHHHH--HHGGGHHHHHHHTCCCEEEEEECSS-------------CHHHHH---------
T ss_pred HHHhc----CCCCeEEEeCCCcccc--cchHHHHHHhhcCCceEEEEEeccc-------------ccchhH---------
Confidence 99998 4689999999999996 8889999999999999999999985 333211
Q ss_pred HHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEE
Q 004968 283 SFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLV 362 (721)
Q Consensus 283 ~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI 362 (721)
.+.... .. ...+ -....++...+++++|+++..+ .+.++|.++|+++.+ .++|+||
T Consensus 126 -~~~~~~-~~---~~~~--------------~~~~~~d~~~iA~a~G~~~~~v---~~~~el~~al~~a~~--~~~p~li 181 (227)
T d1t9ba3 126 -WQSLFY-EH---RYSH--------------THQLNPDFIKLAEAMGLKGLRV---KKQEELDAKLKEFVS--TKGPVLL 181 (227)
T ss_dssp -HHHHHS-TT---CCCS--------------CCCCCCCHHHHHHHTTCEEEEE---CSHHHHHHHHHHHHH--CSSCEEE
T ss_pred -HHhhhh-cc---cccc--------------ccCCCCCHHHHHhhcccceEee---CCHHHHHHHHHHHHH--CCCCEEE
Confidence 000000 00 0000 0112345567899999999866 799999999999998 5899999
Q ss_pred EEEEeccCC
Q 004968 363 HVVTEENRR 371 (721)
Q Consensus 363 ~v~T~kg~G 371 (721)
+|.+.+-.-
T Consensus 182 eV~vd~~~~ 190 (227)
T d1t9ba3 182 EVEVDKKVP 190 (227)
T ss_dssp EEEBCSSCC
T ss_pred EEEECCCCC
Confidence 999987553
|
| >d1ozha3 c.36.1.9 (A:367-558) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Catabolic acetolactate synthase species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.61 E-value=3e-16 Score=153.57 Aligned_cols=158 Identities=15% Similarity=0.114 Sum_probs=109.1
Q ss_pred CCcEEEecCC-chHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEE
Q 004968 141 PVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVT 219 (721)
Q Consensus 141 p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G~AlA~~l~g~~~~Vva 219 (721)
+++.|+.|.| |+.|++..+.-.+ .+++-. ..+.|.+|+++|+|+|+++|. ++++||+
T Consensus 20 ~d~ii~~d~G~~~~~~~~~l~~~~-----p~~~~~-------------~~~~g~mG~~l~~aiGa~la~----p~~~vi~ 77 (192)
T d1ozha3 20 SDVTLTVDMGSFHIWIARYLYTFR-----ARQVMI-------------SNGQQTMGVALPWAIGAWLVN----PERKVVS 77 (192)
T ss_dssp TTEEEEECSSHHHHHHHHTGGGCC-----CSEEEC-------------CCTTCCTTCHHHHHHHHHHHS----TTSEEEE
T ss_pred CCcEEEEcCcHHHHHHHHhcccCC-----Cceeec-------------ccccccccccccchhHHHhhc----cccccee
Confidence 4566667999 6667764443211 111111 124588999999999999984 5899999
Q ss_pred EEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhhhhhccC
Q 004968 220 VISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIG 299 (721)
Q Consensus 220 viGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g 299 (721)
++|||++. |...+|.++.++++|+++||.||+. ++.... . ++ .... +..+
T Consensus 78 i~GDG~f~--~~~~el~t~~~~~l~~~iiv~nN~~-------------~~~~~~-~---------~~--~~~~---~~~~ 127 (192)
T d1ozha3 78 VSGDGGFL--QSSMELETAVRLKANVLHLIWVDNG-------------YNMVAI-Q---------EE--KKYQ---RLSG 127 (192)
T ss_dssp EEEHHHHH--HHTTHHHHHHHHTCCEEEEEEECSB-------------CHHHHH-H---------HH--HHHS---SCCS
T ss_pred eccccccc--chhhhHHHHhhhcCceeEEEEcCCC-------------cccccc-c---------cc--cccC---cccc
Confidence 99999996 7888999999999998888888775 232210 0 00 0000 0011
Q ss_pred cchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEEEEEecc
Q 004968 300 RGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEEN 369 (721)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg 369 (721)
.+ +-.++...+++++|+++..+ ++.++|.++++++.+ .++|++|+|+|.+.
T Consensus 128 ~~--------------~~~~d~~~~A~a~G~~~~~v---~~~~el~~al~~a~~--~~gp~lIeV~vd~~ 178 (192)
T d1ozha3 128 VE--------------FGPMDFKAYAESFGAKGFAV---ESAEALEPTLRAAMD--VDGPAVVAIPVDYR 178 (192)
T ss_dssp CB--------------CCCCCHHHHHHTTTSEEEEC---CSGGGHHHHHHHHHH--SSSCEEEEEEBCCT
T ss_pred Cc--------------CCCCCHHHHHHHhccccEEe---CCHHHHHHHHHHHHH--cCCcEEEEEEeCCC
Confidence 11 11234567889999999865 688999999999988 58999999999764
|
| >d1zpda3 c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate decarboxylase species: Zymomonas mobilis [TaxId: 542]
Probab=99.60 E-value=1.4e-15 Score=150.10 Aligned_cols=182 Identities=12% Similarity=0.152 Sum_probs=116.5
Q ss_pred cccHHHHHHHHhcccCCCCcEEEecCCchHHHHHHHhCchhhhHHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004968 124 SLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (721)
Q Consensus 124 slg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~~~~~~~r~~ggl~G~~~~~es~~d~~~~G~~G~~is~A~G 203 (721)
.+...++...|-.+++ ++|.|+.|.|...|... .+ -++++. ......+.|++|+++|+|+|
T Consensus 2 Pl~~~~~~~~l~~~l~-~~~ivv~d~G~~~~~~~-------------~~----~~~~~~-~~~~~~~~g~mG~~l~aAiG 62 (204)
T d1zpda3 2 PLVNAEIARQVEALLT-PNTTVIAETGDSWFNAQ-------------RM----KLPNGA-RVEYEMQWGHIGWSVPAAFG 62 (204)
T ss_dssp BCCHHHHHHHHHHTCC-TTEEEEECSSHHHHHHH-------------TC----CCCTTC-EEEECTTTCCTTTHHHHHHH
T ss_pred CCCHHHHHHHHHhhCC-CCCEEEECchHhHHHHH-------------Hh----CCCCCC-eEEcCCCCcccchhhHHHHH
Confidence 3444455555555554 78889999995333210 00 011110 11112356899999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchH
Q 004968 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (721)
Q Consensus 204 ~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (721)
+++| .++++|||++|||+|+ |..++|.+|.++++|+++||.||+.. |... .+++ ..
T Consensus 63 a~la----~p~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpi~iiV~NN~~~-------------g~~~-~~~~----~~ 118 (204)
T d1zpda3 63 YAVG----APERRNILMVGDGSFQ--LTAQEVAQMVRLKLPVIIFLINNYGY-------------TIEV-MIHD----GP 118 (204)
T ss_dssp HHHH----CTTSEEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEECSSC-------------HHHH-TTSC----CG
T ss_pred HHHh----CCCCceecccccccee--eeecccchhhhcccccceEEEecccc-------------cccc-eecc----cc
Confidence 9998 4689999999999996 89999999999999999888888752 2110 0000 00
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHHHHHhcCCCCCEEEE
Q 004968 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVH 363 (721)
Q Consensus 284 ~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~~a~~~~~~~P~lI~ 363 (721)
|. ...+.+...+.+. . +...+++++|.++..+ ++.++|.++++++... .++|++||
T Consensus 119 ~~----------~~~~~d~~~~~~~----~------~~~~~a~~~g~~~~~v---~~~~el~~al~~al~~-~~gp~lie 174 (204)
T d1zpda3 119 YN----------NIKNWDYAGLMEV----F------NGNGGYDSGAAKGLKA---KTGGELAEAIKVALAN-TDGPTLIE 174 (204)
T ss_dssp GG----------CCCCCCHHHHHHH----H------HCTTSSSCCCCEEEEE---SBHHHHHHHHHHHHHC-CSSCEEEE
T ss_pred cc----------ccchhhhhhhhhh----c------CcchhhhccCccEEEe---cCHHHHHHHHHHHHHc-CCCcEEEE
Confidence 00 0001111111111 1 1245678899998866 7999999999988642 57999999
Q ss_pred EEEeccCCC
Q 004968 364 VVTEENRRA 372 (721)
Q Consensus 364 v~T~kg~G~ 372 (721)
|.+.+..-.
T Consensus 175 V~vd~~~~~ 183 (204)
T d1zpda3 175 CFIGREDCT 183 (204)
T ss_dssp EECCTTCCC
T ss_pred EEECcccCC
Confidence 998765433
|
| >d1itza3 c.48.1.1 (A:540-675) Transketolase (TK), C-domain {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TK C-terminal domain-like superfamily: TK C-terminal domain-like family: Transketolase C-terminal domain-like domain: Transketolase (TK), C-domain species: Maize (Zea mays) [TaxId: 4577]
Probab=99.59 E-value=3.2e-15 Score=137.99 Aligned_cols=115 Identities=25% Similarity=0.275 Sum_probs=93.7
Q ss_pred eEEEEeCC-----cEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHH---HHHHHh-ccCCeEEEEcCCCCC
Q 004968 581 GKVLVEGK-----DVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIK---LVRELC-QNHTFLITVEEGSIG 651 (721)
Q Consensus 581 ~~vl~eG~-----dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e---~i~~l~-~~~~~vvvvEe~~~g 651 (721)
+|+++++. |++|+++|+++++|++|++.|+++||+++||+++++++|+.+ ....+. ..+..++++|.+...
T Consensus 12 ~Y~l~~~~~~~~~dv~liasGs~v~~al~Aa~~L~~~gi~~~Vvs~p~~~~~~~~~~~~~~~i~~~~~~~~~~ie~~~~~ 91 (136)
T d1itza3 12 GYTISDNSTGNKPDLIVMGTGSELEIAAKAADELRKEGKTVRVVSFVSWELFDEQSDEYKESVLPAAVTARISIEAGSTL 91 (136)
T ss_dssp SEEEEECCSTTCCSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEECSSCCT
T ss_pred CEEEeecCCCCCCCEEEEEecHHHHHHHHHHHHHHhccccccccccccchhhhhhhhhhhhccccccccccchhhhhhhh
Confidence 47888643 899999999999999999999999999999999999888542 233333 345577889998888
Q ss_pred ChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHH
Q 004968 652 GFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALS 708 (721)
Q Consensus 652 G~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~ 708 (721)
+|...+ +.+...+|+ |+|+.+|++++|+++||||+++|++++++
T Consensus 92 ~w~~~~------------~~~~~~~g~-d~FG~Sg~~~~L~~~fglt~~~Iv~~~ks 135 (136)
T d1itza3 92 GWQKYV------------GAQGKAIGI-DKFGASAPAGTIYKEYGITVESIIAAAKS 135 (136)
T ss_dssp TTHHHH------------CSSCEEECC-CSCCCSSCHHHHHHHHTCSHHHHHHHHTT
T ss_pred hHHHhc------------CCcCccccc-cCccCCCCHHHHHHHhCCCHHHHHHHHHc
Confidence 886542 123356786 99999999999999999999999999864
|
| >d1pvda3 c.36.1.9 (A:361-556) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate decarboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.57 E-value=2.1e-15 Score=148.00 Aligned_cols=131 Identities=10% Similarity=0.030 Sum_probs=95.0
Q ss_pred cCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcch
Q 004968 189 FNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSI 268 (721)
Q Consensus 189 ~~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~ 268 (721)
.+.|.+|+++|+|+|+|+|.+..+++++|||++|||++. |..++|.+|.++++|+++||.||+..
T Consensus 50 ~~~g~mG~~l~~aiG~alaa~~~~p~~~Vv~i~GDGsf~--m~~~eL~ta~~~~l~i~~iV~nN~~y------------- 114 (196)
T d1pvda3 50 VLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQ--LTVQEISTMIRWGLKPYLFVLNNDGY------------- 114 (196)
T ss_dssp TTTCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEESSSC-------------
T ss_pred CCcCcccccccchhHHHHHHHhcCCCCceeeccCccccc--cccccccccccccccceEEEEeCCcc-------------
Confidence 356899999999999999999999999999999999995 88899999999999988888887752
Q ss_pred hhhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeC---ceEEeccCCCCHHHHH
Q 004968 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELG---LYYIGPVDGHNIEDLI 345 (721)
Q Consensus 269 g~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G---~~~~g~vdGhd~~~l~ 345 (721)
|.. +....+. ..+ .++-.++...++++|| +.+..+ ++.++|.
T Consensus 115 ~~~-----~~~~~~~-------------~~~--------------~~~~~~d~~~la~a~G~~~~~~~~v---~~~~el~ 159 (196)
T d1pvda3 115 TIE-----KLIHGPK-------------AQY--------------NEIQGWDHLSLLPTFGAKDYETHRV---ATTGEWD 159 (196)
T ss_dssp HHH-----HTTSCTT-------------CGG--------------GCCCCCCGGGHHHHTTCSSEEEEEE---CBHHHHH
T ss_pred cee-----EeeccCc-------------ccc--------------ccCCCCCHHHHHHHhCCCCceEEEe---cCHHHHH
Confidence 211 0000000 000 0111245567888887 555544 7899999
Q ss_pred HHHHHHHhcCCCCCEEEEEEEecc
Q 004968 346 SVLQEVASLGSMGPVLVHVVTEEN 369 (721)
Q Consensus 346 ~al~~a~~~~~~~P~lI~v~T~kg 369 (721)
++++++...+.++|++|||++.+.
T Consensus 160 ~al~~~~~~~~~~~~lIeV~i~~~ 183 (196)
T d1pvda3 160 KLTQDKSFNDNSKIRMIEIMLPVF 183 (196)
T ss_dssp HHHTCTTTTSCSSEEEEEEECCTT
T ss_pred HHHHHHHHhCCCCcEEEEEECCCc
Confidence 999754332357899999998653
|
| >d2ji7a3 c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Oxalyl-CoA decarboxylase species: Oxalobacter formigenes [TaxId: 847]
Probab=99.54 E-value=6.3e-15 Score=142.92 Aligned_cols=127 Identities=11% Similarity=0.072 Sum_probs=91.9
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchh
Q 004968 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (721)
Q Consensus 190 ~~G~~G~~is~A~G~AlA~~l~g~~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (721)
+.|++|+++|+|+|.+ |. ++++||+++|||+|+ |...+|.+|+++++|+++||.||+....-.+... . -+
T Consensus 55 ~~g~mG~~l~~aig~~-a~----~~~~vv~i~GDGsf~--~~~~el~ta~~~~l~i~iiV~NN~g~~~~~q~~~-~--~~ 124 (183)
T d2ji7a3 55 TWGVMGIGMGYCVAAA-AV----TGKPVIAVEGDSAFG--FSGMELETICRYNLPVTVIIMNNGGIYKGNEADP-Q--PG 124 (183)
T ss_dssp TTTCTTCHHHHHHHHH-HH----HCSCEEEEEEHHHHH--TTGGGHHHHHHTTCCEEEEEEECSBSSCSCCCCS-B--TT
T ss_pred Cccccccccchhhhhh-cC----CcceEEEEEcCcchh--hchhhhhhhhhccccchhhhhhhhhhhhhhhccc-c--cc
Confidence 3488999999999866 44 378999999999996 6778999999999999999999974211000000 0 00
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEeccCCCCHHHHHHHHH
Q 004968 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (721)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~vdGhd~~~l~~al~ 349 (721)
.. .+ ..+..++...++++||++++.+ ++.++|.++|+
T Consensus 125 ~~--------------------------~~--------------~~~~~~d~~~~A~a~G~~~~~v---~~~~el~~al~ 161 (183)
T d2ji7a3 125 VI--------------------------SC--------------TRLTRGRYDMMMEAFGGKGYVA---NTPAELKAALE 161 (183)
T ss_dssp BC--------------------------CT--------------TBCCCCCHHHHHHHTTCEEEEE---CSHHHHHHHHH
T ss_pred cc--------------------------cc--------------ccccccchhhhhhhcCCcEEEe---CCHHHHHHHHH
Confidence 00 00 0111234456789999999866 79999999999
Q ss_pred HHHhcCCCCCEEEEEEEeccCC
Q 004968 350 EVASLGSMGPVLVHVVTEENRR 371 (721)
Q Consensus 350 ~a~~~~~~~P~lI~v~T~kg~G 371 (721)
++.+ .++|++|||.|.+..+
T Consensus 162 ~a~~--~~~p~lIev~idp~~~ 181 (183)
T d2ji7a3 162 EAVA--SGKPCLINAMIDPDAG 181 (183)
T ss_dssp HHHH--HTSCEEEEEEBCTTSC
T ss_pred HHHh--CCCcEEEEEEECCCCC
Confidence 9987 4899999999976443
|
| >d2c42a3 c.48.1.3 (A:259-415) Pyruvate-ferredoxin oxidoreductase, PFOR, domain II {Desulfovibrio africanus [TaxId: 873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TK C-terminal domain-like superfamily: TK C-terminal domain-like family: Pyruvate-ferredoxin oxidoreductase, PFOR, domain II domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domain II species: Desulfovibrio africanus [TaxId: 873]
Probab=99.22 E-value=4.1e-11 Score=112.40 Aligned_cols=116 Identities=9% Similarity=0.088 Sum_probs=82.3
Q ss_pred eCCcEEEEEechhhHHHHHHHHHHHhCCCCeEEeecCccccccHHHHHHHh-ccCCeEEEEcCCC-CCC----hHHHHHH
Q 004968 586 EGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELC-QNHTFLITVEEGS-IGG----FGSHVSH 659 (721)
Q Consensus 586 eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~-~~~~~vvvvEe~~-~gG----~gs~v~~ 659 (721)
+++|++||+||+++..|++|++.|+++|++++||++|++||||.+.+.+.+ ++.+.|+|+|++. .|+ +...|.+
T Consensus 9 ~dAd~viV~~Gs~~~~a~~A~~~L~~~Gi~vgvi~~r~lrPf~~~~l~~~l~k~~k~V~Vle~~~~~G~~g~~L~~dv~s 88 (157)
T d2c42a3 9 PDAERVIVSMGSSCETIEEVINHLAAKGEKIGLIKVRLYRPFVSEAFFAALPASAKVITVLDRTKEPGAPGDPLYLDVCS 88 (157)
T ss_dssp TTCSEEEEECSTHHHHHHHHHHHHHTTTCCEEEEEESEEESCCHHHHHHTSCTTCCEEEEEESSCCTTCSSCHHHHHHHH
T ss_pred CCCCEEEEEeCHhHHHHHHHHHHHHhhcccccEEEeEEEEeCCHHHHHHHHhccCCEEEEEeCCcCCCCCchHHHHHHHH
Confidence 568999999999999999999999999999999999999999999887755 6667777777776 454 4455666
Q ss_pred HHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhhcchh
Q 004968 660 FIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTRE 715 (721)
Q Consensus 660 ~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~~~~~ 715 (721)
.+...+. ...++. +. +...|.+ -++++++.+-++++...+|+
T Consensus 89 aL~~~~~--~~~~v~--~~---~~Glggr-------D~~~~~~~~i~e~l~~~~k~ 130 (157)
T d2c42a3 89 AFVERGE--AMPKIL--AG---RYGLGSK-------EFSPAMVKSVYDNMSGAKKN 130 (157)
T ss_dssp HHHHHCS--CCCEEE--EE---ECCGGGC-------CCCHHHHHHHHHHHHTTCCS
T ss_pred HHHhcCC--CCceEe--eE---ecccCCC-------CCCHHHHHHHHHHhhccccc
Confidence 6655442 112222 11 1112222 26788888777776554443
|
| >d2ieaa1 c.36.1.6 (A:471-700) Pyruvate dehydrogenase E1 component, Pyr module {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Pyruvate dehydrogenase E1 component, Pyr module species: Escherichia coli [TaxId: 562]
Probab=99.13 E-value=6.6e-10 Score=107.04 Aligned_cols=161 Identities=16% Similarity=0.110 Sum_probs=123.8
Q ss_pred cccHHHHHHHHHHHHHHcC---CCeEEEecCCCCccChHHHHHh-------------------------CCCcEeecccc
Q 004968 400 SRTYDDCFIEALVMEAEKD---KDIVVVHAGMEMDLSLQLFQEK-------------------------FPERYFDVGMA 451 (721)
Q Consensus 400 ~~~~~~~~~~~L~~~~~~d---~~iv~i~ad~~~~~~l~~f~~~-------------------------fp~R~~d~GIa 451 (721)
..+.+.+|++.|.++++.. ++||-+.+|...++||+.+.++ -.++.++.||+
T Consensus 21 ~iSTt~Af~riL~~L~rd~~lg~RiVpivPDearTfgm~~~f~q~GIys~~gq~y~p~D~~~~~~y~e~~~GQ~le~GI~ 100 (230)
T d2ieaa1 21 EISTTIAFVRALNVMLKNKSIKDRLVPIIADEARTFGMEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDEKGQILQEGIN 100 (230)
T ss_dssp CBCHHHHHHHHHHHHTTCTTTGGGEEEEESSCSGGGTCHHHHHHHCBBCC-----------------CBTTCCBEECCSC
T ss_pred cccHHHHHHHHHHHHhcCcccccceeeecCccceecchhhhhhhcceeeeccccccccccccceEccccCCCcEeeccch
Confidence 4688999999999998732 5699999999999999765432 14799999999
Q ss_pred HHHHHHH--HHHHHhC--C--CeeEEEecHhhHHHHHHHHHHHhh--cCCcceEEEEcCCCC-cCCCCCCcCcHHHHHHH
Q 004968 452 EQHAVTF--SAGLACG--G--LKPFCIIPSAFLQRAYDQVVNDVD--QQRLPVRFVITSAGL-VGSDGPTQCGAFDITFM 522 (721)
Q Consensus 452 E~~~v~~--AaGlA~~--G--~~p~~~tys~Fl~ra~dqi~~~~a--~~~lpVv~v~~~~G~-~G~dG~TH~~~~dia~~ 522 (721)
|.++++. |+|.|.+ | +.||...|++|..+..+.+. ++| .+.--.+++.+.+|. ....|-.||......+.
T Consensus 101 E~g~~~~~~Aagtsy~~~g~~miP~y~~YsmFg~qr~~dl~-waa~d~~argFl~g~T~grtTL~gEGlqHqdg~s~l~~ 179 (230)
T d2ieaa1 101 ELGAGCSWLAAATSYSTNNLPMIPFYIYYSMFGFQRIGDLC-WAAGDQQARGFLIGGTSGRTTLNGEGLQHEDGHSHIQS 179 (230)
T ss_dssp HHHHHHHHHHHHTHHHHTSCCCEEEEEEEGGGSHHHHHHHH-HHHHHTTCCSEEEEESCSTTTSTTTCBTTCCSCHHHHH
T ss_pred hhhHHHHHHHhhhhHhhcCCccceeeeehhHHHhhhHhHHH-HHHHhhccCceEEEecCCCCeecCCcccccccccceec
Confidence 9999884 5666654 6 78999899999644455442 443 444456777666666 35568999988887888
Q ss_pred ccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCC
Q 004968 523 SCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRG 561 (721)
Q Consensus 523 ~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~ 561 (721)
..+||+.-+.|+...|+..++++.+++ +..-+|++++.-
T Consensus 180 ~~~P~~~sydPafa~Ela~i~~~Gl~rM~~~~~~~v~yylt~~ 222 (230)
T d2ieaa1 180 LTIPNCISYDPAYAYEVAVIMHDGLERMYGEKQENVYYYITTL 222 (230)
T ss_dssp TTSTTEEEECCSSHHHHHHHHHHHHHHHHSTTCCCCEEEEECC
T ss_pred ccCCCceEEcchHHHHHHHHHHHHHHHHhCCCCCcEEEEEEec
Confidence 899999999999999999999999874 223677777653
|
| >d2ieaa3 c.48.1.1 (A:701-886) Pyruvate dehydrogenase E1 component, C-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TK C-terminal domain-like superfamily: TK C-terminal domain-like family: Transketolase C-terminal domain-like domain: Pyruvate dehydrogenase E1 component, C-domain species: Escherichia coli [TaxId: 562]
Probab=98.97 E-value=6.4e-10 Score=106.98 Aligned_cols=124 Identities=15% Similarity=0.085 Sum_probs=89.7
Q ss_pred ceEEEEe--C--CcEEEEEechhhHHHHHHHH-HHHhCCCCeEEeecCccccccHHHHHH------------------Hh
Q 004968 580 KGKVLVE--G--KDVALLGYGAMVQNCLKARA-LLSKLGIDVTVADARFCKPLDIKLVRE------------------LC 636 (721)
Q Consensus 580 k~~vl~e--G--~dv~Iva~Gs~v~~al~Aa~-~L~~~Gi~v~VId~~~l~PlD~e~i~~------------------l~ 636 (721)
.+|++++ + .+|+|+++|+++.+|++|++ .|++.|++++|++++|..-|+.+.... ..
T Consensus 12 G~Y~l~~~~~~~p~v~LlaSGsev~~aleAa~~ll~~~gi~~~VvS~pS~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (186)
T d2ieaa3 12 GIYKLETIEGSKGKVQLLGSGSILRHVREAAEILAKDYGVGSDVYSVTSFTELARDGQDCERWNMLHPLETPRVPYIAQV 91 (186)
T ss_dssp TCEEEEEECCSSEEEEEEECGGGHHHHHHHHHHHHHHHCEEEEEEECSCHHHHHHHHHHHHHHHHHCTTSCCCCCHHHHH
T ss_pred CcEEeeecCCCCceEEEEEehHHHHHHHHHHHHHHHhcCCCceEEEecCHHHHHHhhHHHHhhccccccccccchhhhcc
Confidence 3566764 3 48999999999999999998 567789999999999988887654321 11
Q ss_pred ccCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhhc
Q 004968 637 QNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 712 (721)
Q Consensus 637 ~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~~~~~g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~~ 712 (721)
.....++++++....... .+. ++. ...+...+|+ |.|+.+|+.++|+++||+|+++|++++++.|.+
T Consensus 92 ~~~~p~va~~~~~~~~~~----~~~---~~~-~g~~~~~LG~-d~FG~S~~~~~L~~~Fgi~~~~Iv~aAl~~L~~ 158 (186)
T d2ieaa3 92 MNDAPAVASTDYMKLFAE----QVR---TYV-PADDYRVLGT-DGFGRSDSRENLRHHFEVDASYVVVAALGELAK 158 (186)
T ss_dssp CCSSCEEEECSSCTHHHH----TTG---GGC-CSSCEEEECC-CSCBCCSCHHHHHHHTTCSHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEEeeeccch----hhc---ccc-cCCCcEEEEe-CCcCCCCChHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 112356667665421111 110 110 0235678998 999999999999999999999999999988843
|
| >d2c42a1 c.36.1.8 (A:2-258) Pyruvate-ferredoxin oxidoreductase, PFOR, domain I {Desulfovibrio africanus [TaxId: 873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: PFOR Pyr module domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domain I species: Desulfovibrio africanus [TaxId: 873]
Probab=98.52 E-value=3.4e-07 Score=92.13 Aligned_cols=113 Identities=16% Similarity=0.063 Sum_probs=92.3
Q ss_pred EeeccccHHHHHHHHHHHHhCCCeeEEEecHhhHHHHHHHHHHHhhcCCcceEEEE-cCCCCcCCCCCCcCcHHHHHHHc
Q 004968 445 YFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVI-TSAGLVGSDGPTQCGAFDITFMS 523 (721)
Q Consensus 445 ~~d~GIaE~~~v~~AaGlA~~G~~p~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~-~~~G~~G~dG~TH~~~~dia~~~ 523 (721)
.+-..-+|+.+++++.|++.+|.|.++++.+..+.++.|.+ ..++..++|+++++ .|++. +...+++....|+.+.+
T Consensus 56 ~~~~~e~E~~A~~~~~Ga~~aG~r~~t~ts~~Gl~~m~e~l-~~a~~~~~P~V~~v~~r~~~-~~~~~~~~~q~d~~~~~ 133 (257)
T d2c42a1 56 TIREMQSEAGAAGAVHGALAAGALTTTFTASQGLLLMIPNM-YKISGELLPGVFHVTARAIA-AHALSIFGDHQDIYAAR 133 (257)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCEEEEECHHHHHHHHHHH-HHHHHTTCCCEEEEEECCCC-SSSBCCSCCSHHHHTTT
T ss_pred EEEEecccchhHHHHHHHHhcCCCeEEEecchHHHHHHHHH-HHHHhcCCceEEEEEecCCC-CCCCccccchHHHHHHH
Confidence 45667899999999999999999999999999999999987 56688899977766 44443 33457888888865544
Q ss_pred cCCCcEEEeeCCHHHHHHHHHHHHHhC---CCCEEEEecC
Q 004968 524 CLPNMIVMAPSDEDELVDMVATVASID---DRPVCFRYPR 560 (721)
Q Consensus 524 ~iPnl~V~~Psd~~E~~~~l~~a~~~~---~~P~~ir~~r 560 (721)
.-|+.++.|+|++|+.++...|++.+ ..|+++.++.
T Consensus 134 -~~g~~~l~~~s~QEa~d~~~~A~~lae~~~~Pv~~~~Dg 172 (257)
T d2c42a1 134 -QTGFAMLASSSVQEAHDMALVAHLAAIESNVPFMHFFDG 172 (257)
T ss_dssp -TSSCEEEECCSHHHHHHHHHHHHHHHHHHCCCEEEEEET
T ss_pred -hcceEEEecCCHHHHHHHHHHHHHHHHHhCCCEEEEecc
Confidence 56899999999999999999988643 5599887753
|
| >d2c42a2 c.36.1.12 (A:786-1232) Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI {Desulfovibrio africanus [TaxId: 873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: PFOR PP module domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI species: Desulfovibrio africanus [TaxId: 873]
Probab=97.92 E-value=7.5e-06 Score=86.96 Aligned_cols=116 Identities=17% Similarity=0.220 Sum_probs=84.5
Q ss_pred CCeEEEEEcCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCcCCCccCCCCcchhhhhhhhhhhhhchHHHHHHHHHhh
Q 004968 214 RECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKG 293 (721)
Q Consensus 214 ~~~VvaviGDGal~~G~~~Ealn~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~ 293 (721)
+..||++.|||.+- ..-+.+|.+|...+.|+++||.||..+++..++.+...|.|+..++..
T Consensus 169 k~~V~~~gGDG~~~-dIG~~~L~~A~~rg~nit~ivlDNe~Y~nTGgQ~S~~TP~Ga~t~ttp----------------- 230 (447)
T d2c42a2 169 KKSVWIFGGDGWAY-DIGYGGLDHVLASGEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKFAA----------------- 230 (447)
T ss_dssp CCEEEEEEEHHHHH-TTTHHHHHHHHHTTCSCEEEEEECSSBTTTTCBCCTTSCTTCCBBTBT-----------------
T ss_pred CCcEEEEecCccHh-hcChHHHHHHHHcCCCceEEEEcCccccCCCCcCCCCCcCCeeccccc-----------------
Confidence 57899999999854 244679999999999999999999987776666677777776532111
Q ss_pred hhhccCcchHHHHHHHHHHhhcccCCCccceeeeeCceEEecc-CCCCHHHHHHHHHHHHhcCCCCCEEEEEEEe
Q 004968 294 MTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPV-DGHNIEDLISVLQEVASLGSMGPVLVHVVTE 367 (721)
Q Consensus 294 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ea~G~~~~g~v-dGhd~~~l~~al~~a~~~~~~~P~lI~v~T~ 367 (721)
.|.... .-+...++.++|..|+..+ .+++.+.+.++++++.+ .+||.+|++.+.
T Consensus 231 ----~Gk~~~--------------kkdi~~ia~a~g~~YVA~~s~~~~~~~l~kaikeA~~--~~GpS~I~~~sP 285 (447)
T d2c42a2 231 ----AGKRTG--------------KKDLARMVMTYGYVYVATVSMGYSKQQFLKVLKEAES--FPGPSLVIAYAT 285 (447)
T ss_dssp ----TCCSSC--------------CCCHHHHHHTTSSSEEEEECTTTCHHHHHHHHHHHHH--SSSCEEEEEECC
T ss_pred ----CCCcCC--------------CCCHHHHHHHCCCceEEEEeCCCCHHHHHHHHHHHHh--CCCCeEEEeecC
Confidence 011000 0011345667888887655 57999999999999998 489999999875
|
| >d1zpda2 c.36.1.5 (A:2-187) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate decarboxylase species: Zymomonas mobilis [TaxId: 542]
Probab=96.15 E-value=0.046 Score=50.85 Aligned_cols=117 Identities=13% Similarity=0.120 Sum_probs=75.2
Q ss_pred CcEeeccccHHHHHHHHHHHHhC-CCeeEEEecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcH---
Q 004968 443 ERYFDVGMAEQHAVTFSAGLACG-GLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGA--- 516 (721)
Q Consensus 443 ~R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~--- 516 (721)
=|++.+ ..|++++.+|.|.|.. |.-.++.++.+.+..++..+ ..+...+.||+++...... .+.+...|+..
T Consensus 41 i~~v~~-rhE~~A~~mA~gyar~tg~~~v~~t~GpG~~N~~~gl-~~A~~~~~Pvl~isg~~~~~~~~~~~~~~~~~~~~ 118 (186)
T d1zpda2 41 MEQVYC-CNELNCGFSAEGYARAKGAAAAVVTYSVGALSAFDAI-GGAYAENLPVILISGAPNNNDHAAGHVLHHALGKT 118 (186)
T ss_dssp SEEEEC-SSHHHHHHHHHHHHHHHSCEEEEECTTTTHHHHHHHH-HHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSS
T ss_pred ceEeee-ccccceehhhhhhhhccccceeEeeccccchhhhhhh-hhhhhcccceEEEecccCcccccCCCcceeecCCc
Confidence 366665 8999999999999997 65445556888887777766 4567889999998743222 23222334422
Q ss_pred ---HHHHHHccCCCcEEEeeCCHHHHHHHHHHHHH---hCCCCEEEEecCCC
Q 004968 517 ---FDITFMSCLPNMIVMAPSDEDELVDMVATVAS---IDDRPVCFRYPRGA 562 (721)
Q Consensus 517 ---~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~---~~~~P~~ir~~r~~ 562 (721)
..+.+++.+-.+ .....+++++...++.|++ ...+|++|-+|...
T Consensus 119 ~~~~~~~~~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~~PV~l~iP~Dv 169 (186)
T d1zpda2 119 DYHYQLEMAKNITAA-AEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNI 169 (186)
T ss_dssp CCCHHHHHHGGGCSC-EEEECSGGGHHHHHHHHHHHHHHHTCCEEEEEETTS
T ss_pred chhhhhhccCCceee-eeEcCCHHHHHHHHHHHHHHHhhCCCCEEEECCcch
Confidence 125677766555 3444555555555544443 23479999998754
|
| >d1q6za2 c.36.1.5 (A:2-181) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Benzoylformate decarboxylase species: Pseudomonas putida [TaxId: 303]
Probab=95.94 E-value=0.034 Score=51.54 Aligned_cols=116 Identities=15% Similarity=0.162 Sum_probs=82.9
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEEEe-cHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDI 519 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~t-ys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~di 519 (721)
+++.+ -.|++++.+|.|.|.. |...++.+ ..+....++..| ..+...+.|++++...... .|. ++.||.....
T Consensus 39 ~~i~~-rhE~~A~~mA~gyar~tgk~~v~~~~~GpG~~n~~~gl-~~A~~~~~Pvlvi~g~~~~~~~g~-~~~~q~~D~~ 115 (180)
T d1q6za2 39 RYILA-LQEACVVGIADGYAQASRKPAFINLHSAAGTGNAMGAL-SNAWNSHSPLIVTAGQQTRAMIGV-EALLTNVDAA 115 (180)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHTSCEEEEEEHHHHHHHTHHHH-HHHHHTTCCEEEEEEECCHHHHTT-TCTTCCTTGG
T ss_pred eEEEE-ccchhHHHHHHHHhhhccCcceEEecccccccccccee-Hhhhhcccceeeeccccccccccc-cccchhhhee
Confidence 66664 7899999999999997 54555544 667776666655 4667889999988743332 243 4667777666
Q ss_pred HHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCCc
Q 004968 520 TFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGAI 563 (721)
Q Consensus 520 a~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~~ 563 (721)
.+++.+-.+ .+.+.+++++...++.|++. ..+|++|-+|....
T Consensus 116 ~~~~~~tK~-~~~v~~~~~i~~~l~~A~~~a~~~~~GPv~l~iP~D~~ 162 (180)
T d1q6za2 116 NLPRPLVKW-SYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDW 162 (180)
T ss_dssp GSSTTSCSC-EECCSSGGGHHHHHHHHHHHHHSSSCCCEEEEEEGGGT
T ss_pred ecccccccc-cccCCCHHHHHHHHHHHHHHHhcCCCccEEEEcChhHh
Confidence 777776665 46778888888888888763 35699999997653
|
| >d2ez9a2 c.36.1.5 (A:9-182) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate oxidase species: Lactobacillus plantarum [TaxId: 1590]
Probab=95.88 E-value=0.054 Score=49.78 Aligned_cols=123 Identities=12% Similarity=0.103 Sum_probs=79.3
Q ss_pred HHHHHhCCC-cEeeccccHHHHHHHHHHHHhC-CCeeEEEe-cHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCC
Q 004968 435 QLFQEKFPE-RYFDVGMAEQHAVTFSAGLACG-GLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSD 509 (721)
Q Consensus 435 ~~f~~~fp~-R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~t-ys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~d 509 (721)
+.|.++.++ |++.+ ..|++++-+|.|.+.. |...+|.+ ..+.+..++..+ ..+...+.|++++...... .+.
T Consensus 34 dal~~~~~~i~~i~~-r~E~~A~~~A~gyar~tgk~gv~~~t~GpG~~N~~~gl-~~A~~~~~P~l~i~g~~~~~~~~~- 110 (174)
T d2ez9a2 34 DALSAERDRIHYIQV-RHEEVGAMAAAADAKLTGKIGVCFGSAGPGGTHLMNGL-YDAREDHVPVLALIGQFGTTGMNM- 110 (174)
T ss_dssp HHHHHTTTTSEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTTHHHH-HHHHHTTCCEEEEEEECCTTTTTS-
T ss_pred HHHHhcCCCcEEEEe-cccchhHHHHHHHHhhcCceeEEeecccccccchhhhH-HHHHhcCccceeeeccccccccCc-
Confidence 345444444 66665 8999999999999986 66656654 677777666665 3556789999998744333 232
Q ss_pred CCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHH---hCCCCEEEEecCCC
Q 004968 510 GPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVAS---IDDRPVCFRYPRGA 562 (721)
Q Consensus 510 G~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~---~~~~P~~ir~~r~~ 562 (721)
..+|......+++.+-.+. +...++.++...++.|++ ...+|++|-+|...
T Consensus 111 -~~~Q~~d~~~~~~~itk~~-~~v~~~~~~~~~i~~A~~~A~~~pGPv~l~iP~Dv 164 (174)
T d2ez9a2 111 -DTFQEMNENPIYADVADYN-VTAVNAATLPHVIDEAIRRAYAHQGVAVVQIPVDL 164 (174)
T ss_dssp -CCTTCCCCHHHHTTTCSEE-EECCCSTTHHHHHHHHHHHHHHHTSEEEEEEETTG
T ss_pred -cccccchhhhhhccccccc-cccccHHHHHHHHHHHHHHHhCCCCCEEEEeCccc
Confidence 2355555567788776653 344455554444444443 24699999998764
|
| >d2djia2 c.36.1.5 (A:3-186) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate oxidase species: Aerococcus viridans [TaxId: 1377]
Probab=95.69 E-value=0.045 Score=50.83 Aligned_cols=116 Identities=9% Similarity=0.030 Sum_probs=80.1
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~ 521 (721)
||+.+ -.|++++-+|.|.+.. |...+|. +..+.+..++..| ..+...+.||+++..........-..+|......+
T Consensus 45 ~~i~~-r~E~~A~~~A~gyar~tg~~gv~~~t~GpG~~n~~~gl-~~A~~~~~Pvl~i~g~~~~~~~~~~~~Q~~d~~~~ 122 (184)
T d2djia2 45 KFLQV-KHEEVGAMAAVMQSKFGGNLGVTVGSGGPGASHLINGL-YDAAMDNIPVVAILGSRPQRELNMDAFQELNQNPM 122 (184)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHTTCCCEEEEECTTHHHHTTHHHH-HHHHHHTCCEEEEEEESCGGGTTTTCTTCCCCHHH
T ss_pred EEEEe-cCCcchHHHHHhhhhcccCcceeeccccccccchhHhH-HHHHHhCccceeecccchhhHhhcCcccccccccc
Confidence 78877 7899999999999987 5444544 3677776666665 35566799999987433332111224566666678
Q ss_pred HccCCCcEEEeeCCHHHHHHHHHHHHHh---CCCCEEEEecCCC
Q 004968 522 MSCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYPRGA 562 (721)
Q Consensus 522 ~~~iPnl~V~~Psd~~E~~~~l~~a~~~---~~~P~~ir~~r~~ 562 (721)
++.+-.+ .+...+++++..+++.|++. ..+|++|-+|...
T Consensus 123 ~~~itk~-~~~v~~~~~~~~~~~~A~~~a~~~rGPv~i~iP~Dv 165 (184)
T d2djia2 123 YDHIAVY-NRRVAYAEQLPKLVDEAARMAIAKRGVAVLEVPGDF 165 (184)
T ss_dssp HHTTCSE-EEECCSGGGHHHHHHHHHHHHHHTTSEEEEEEETTG
T ss_pred hhhhcce-eeccccchhhHHHHHHHHHHHhCCCCCEEEEeCchh
Confidence 8877665 45667777877777777652 3589999998864
|
| >d2ihta2 c.36.1.5 (A:12-197) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Carboxyethylarginine synthase species: Streptomyces clavuligerus [TaxId: 1901]
Probab=95.65 E-value=0.056 Score=50.24 Aligned_cols=115 Identities=13% Similarity=0.074 Sum_probs=82.4
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEEEe-cHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcC-CCCCCcCcHHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVG-SDGPTQCGAFDIT 520 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~t-ys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G-~dG~TH~~~~dia 520 (721)
|++.+ ..|++++.+|.|.|.. |...+|.+ ..+.+..++..+ ..+-..+.|++++........ ....+||......
T Consensus 39 ~~i~~-~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~n~~~gl-~~A~~~~~Pvl~i~g~~~~~~~~~~~~~q~~d~~~ 116 (186)
T d2ihta2 39 DFVLT-RHEFTAGVAADVLARITGRPQACWATLGPGMTNLSTGI-ATSVLDRSPVIALAAQSESHDIFPNDTHQCLDSVA 116 (186)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHCSCEEEEECTTHHHHHHHHHH-HHHHHHTCCEEEEEEESCGGGCCTTTSTTCCCHHH
T ss_pred EEEEE-ccchhhHHHHHHHhhccCCcceeeccccccccchhhhh-hHHHHhhccceeeeccCcchhcccccccccccccc
Confidence 67765 7899999999999986 76666654 777777777766 455667999999864322111 1345688887788
Q ss_pred HHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCC
Q 004968 521 FMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRG 561 (721)
Q Consensus 521 ~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~ 561 (721)
+++.+-.+ .....+++++...++.|++. ..+|++|-+|..
T Consensus 117 ~~~~~tk~-~~~v~~~~~i~~~l~~A~~~a~s~~~GPv~l~iP~D 160 (186)
T d2ihta2 117 IVAPMSKY-AVELQRPHEITDLVDSAVNAAMTEPVGPSFISLPVD 160 (186)
T ss_dssp HHGGGSSE-EEECCSGGGHHHHHHHHHHHHTBSSCCCEEEEEEHH
T ss_pred ccCCceee-ccccCCchhhhhHHHHHHHHHhcCCCeeEEEEeCHh
Confidence 88887655 45667888888877777663 346999998864
|
| >d1t9ba2 c.36.1.5 (A:89-263) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Acetohydroxyacid synthase catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.40 E-value=0.067 Score=49.14 Aligned_cols=116 Identities=13% Similarity=0.070 Sum_probs=77.4
Q ss_pred cEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHH
Q 004968 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (721)
Q Consensus 444 R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~ 521 (721)
|++. ...|++++.+|.|.|.. |...+|. +..+.+..++..+ ..+...+.||+++.............||......+
T Consensus 44 ~~i~-~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~gl-~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l 121 (175)
T d1t9ba2 44 NFVL-PKHEQGAGHMAEGYARASGKPGVVLVTSGPGATNVVTPM-ADAFADGIPMVVFTGQVPTSAIGTDAFQEADVVGI 121 (175)
T ss_dssp EEEC-CSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHTTHHHH-HHHHHHTCCEEEEEEECCTTTTTSCCTTCCCHHHH
T ss_pred eEEE-ecCchhHHHHHHHHHHHhCCceEEEEecCcHHHHHHHHH-HHHHHcCCCEEEEecCCChhhcCCCccccccHhHh
Confidence 5666 58999999999999997 6555554 4677776666655 35567799999988433322112234555555567
Q ss_pred HccCCCcEEEeeCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004968 522 MSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (721)
Q Consensus 522 ~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~P~~ir~~r~~ 562 (721)
++.+-.+ .....+++++...++.|++. ..+|++|-+|...
T Consensus 122 ~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~Dv 165 (175)
T d1t9ba2 122 SRSCTKW-NVMVKSVEELPLRINEAFEIATSGRPGPVLVDLPKDV 165 (175)
T ss_dssp TGGGSSE-EEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHHH
T ss_pred cccceee-eEecCCHHHHHHHHHHHHHHHhcCCCccEEEEcChhh
Confidence 7777655 45666777766666666652 3569999988653
|
| >d2ji7a3 c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Oxalyl-CoA decarboxylase species: Oxalobacter formigenes [TaxId: 847]
Probab=94.65 E-value=0.051 Score=50.32 Aligned_cols=153 Identities=18% Similarity=0.204 Sum_probs=86.0
Q ss_pred ccHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh--HHHHHhCCCcEeeccccH--HHHHHHHHHHHhCCCeeEEEe--c
Q 004968 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL--QLFQEKFPERYFDVGMAE--QHAVTFSAGLACGGLKPFCII--P 474 (721)
Q Consensus 401 ~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l--~~f~~~fp~R~~d~GIaE--~~~v~~AaGlA~~G~~p~~~t--y 474 (721)
.++..+ -++|.+.+.++|+.++++.. +..... ..+..+.|.+|+..|.-- ...++.|.|.++.--||++++ -
T Consensus 6 ~~~~~~-~~~l~~~~~~~~D~iiv~dg-g~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~l~~aig~~a~~~~~vv~i~GD 83 (183)
T d2ji7a3 6 MNYSNS-LGVVRDFMLANPDISLVNEG-ANALDNTRMIVDMLKPRKRLDSGTWGVMGIGMGYCVAAAAVTGKPVIAVEGD 83 (183)
T ss_dssp BCHHHH-HHHHHHHHHHCCSSEEEEES-SHHHHHHHHHSCCCSTTCEEECTTTTCTTCHHHHHHHHHHHHCSCEEEEEEH
T ss_pred CCHHHH-HHHHHHHHhcCCCEEEEECc-hhHHHHHHHHhccCCCCcEEecCCccccccccchhhhhhcCCcceEEEEEcC
Confidence 344444 56777888888887776532 111111 122334578999876422 122444444443334566665 4
Q ss_pred HhhHHHHHHHHHHHhhcCCcceEEEEc-CCCCc-C-----CCCC---CcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHH
Q 004968 475 SAFLQRAYDQVVNDVDQQRLPVRFVIT-SAGLV-G-----SDGP---TQCGAFDITFMSCLPNMIVMAPSDEDELVDMVA 544 (721)
Q Consensus 475 s~Fl~ra~dqi~~~~a~~~lpVv~v~~-~~G~~-G-----~dG~---TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~ 544 (721)
.+|+...-+ + ..++..++|+++++- ..|+. . ..|. +.....|+.-++.--|+..+...++.|+...++
T Consensus 84 Gsf~~~~~e-l-~ta~~~~l~i~iiV~NN~g~~~~~q~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~ 161 (183)
T d2ji7a3 84 SAFGFSGME-L-ETICRYNLPVTVIIMNNGGIYKGNEADPQPGVISCTRLTRGRYDMMMEAFGGKGYVANTPAELKAALE 161 (183)
T ss_dssp HHHHTTGGG-H-HHHHHTTCCEEEEEEECSBSSCSCCCCSBTTBCCTTBCCCCCHHHHHHHTTCEEEEECSHHHHHHHHH
T ss_pred cchhhchhh-h-hhhhhccccchhhhhhhhhhhhhhhccccccccccccccccchhhhhhhcCCcEEEeCCHHHHHHHHH
Confidence 667654333 2 345678999888773 33331 1 0111 100111222232223778888899999999999
Q ss_pred HHHHhCCCCEEEEe
Q 004968 545 TVASIDDRPVCFRY 558 (721)
Q Consensus 545 ~a~~~~~~P~~ir~ 558 (721)
.|++ .++|++|-.
T Consensus 162 ~a~~-~~~p~lIev 174 (183)
T d2ji7a3 162 EAVA-SGKPCLINA 174 (183)
T ss_dssp HHHH-HTSCEEEEE
T ss_pred HHHh-CCCcEEEEE
Confidence 9987 589999855
|
| >d1pvda2 c.36.1.5 (A:2-181) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate decarboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.21 E-value=0.18 Score=46.20 Aligned_cols=119 Identities=13% Similarity=0.010 Sum_probs=70.9
Q ss_pred CCC-cEeeccccHHHHHHHHHHHHhCCCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCC--CCcCCCCCCcCcH
Q 004968 441 FPE-RYFDVGMAEQHAVTFSAGLACGGLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSA--GLVGSDGPTQCGA 516 (721)
Q Consensus 441 fp~-R~~d~GIaE~~~v~~AaGlA~~G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~--G~~G~dG~TH~~~ 516 (721)
.++ |++.+ -.|++++.+|.|.+...-+|+|. +..+.+..++..+ ..+...+.|++++.... +..+.+...||..
T Consensus 39 ~~~i~~i~~-~~E~~A~~~A~gyar~t~~~~v~~t~GpG~~N~~~gl-~~A~~~~~P~l~i~g~~~~~~~~~~~~~~~~~ 116 (180)
T d1pvda2 39 VEGMRWAGN-ANELNAAYAADGYARIKGMSCIITTFGVGELSALNGI-AGSYAEHVGVLHVVGVPSISSQAKQLLLHHTL 116 (180)
T ss_dssp STTCEECCC-SCHHHHHHHHHHHHHHHSCEEEEEETTHHHHHHHHHH-HHHHHHTCCEEEEEEECCCC--------CCSC
T ss_pred hcceEEeee-cccchhhHHHHHHhhccCCceeeeccccccchhhHHH-HHHHhhcccEEEEeccCCcccccccceeeecc
Confidence 344 66665 89999999999999875556654 5777777777766 35567799999986321 2123333344322
Q ss_pred H------HHHHHccCCCcEE--EeeCCH-HHHHHHHHHHHHhCCCCEEEEecCCC
Q 004968 517 F------DITFMSCLPNMIV--MAPSDE-DELVDMVATVASIDDRPVCFRYPRGA 562 (721)
Q Consensus 517 ~------dia~~~~iPnl~V--~~Psd~-~E~~~~l~~a~~~~~~P~~ir~~r~~ 562 (721)
. ...+++.+-.+.. -.|.+. +.+..+++.|.. ..+|++|-+|+..
T Consensus 117 ~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~-~~gPv~i~iP~dv 170 (180)
T d1pvda2 117 GNGDFTVFHRMSANISETTAMITDIATAPAEIDRCIRTTYV-TQRPVYLGLPANL 170 (180)
T ss_dssp SSSCSSHHHHHHGGGCSEEEECCCTTTHHHHHHHHHHHHHH-HTSCEEEEEETTT
T ss_pred cccchhHHHHHhhhheeEEEEcCCHHHHHHHHHHHHHHHhC-CCCCEEEECCccc
Confidence 1 1245565555432 223443 344555555544 4689999999765
|
| >d1ozha2 c.36.1.5 (A:7-187) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Catabolic acetolactate synthase species: Klebsiella pneumoniae [TaxId: 573]
Probab=94.20 E-value=0.19 Score=46.21 Aligned_cols=151 Identities=10% Similarity=0.058 Sum_probs=92.3
Q ss_pred cHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh---HHHHHhCCCcEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHh
Q 004968 402 TYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL---QLFQEKFPERYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSA 476 (721)
Q Consensus 402 ~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l---~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~ 476 (721)
+=.+++.+.|.+.. -+.++.+. |+..+ +.|. +..=|++.+ ..|++++.+|.|.|.. |...++. +..+
T Consensus 6 ~G~d~l~~~L~~~G--v~~vFg~p----G~~~~~l~~al~-~~~i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~~t~Gp 77 (181)
T d1ozha2 6 HGADLVVSQLEAQG--VRQVFGIP----GAKIDKVFDSLL-DSSIRIIPV-RHEANAAFMAAAVGRITGKAGVALVTSGP 77 (181)
T ss_dssp CHHHHHHHHHHHHT--CCEEEEEC----CTTTHHHHHHGG-GSSSEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECSTH
T ss_pred cHHHHHHHHHHHCC--CCEEEEeC----cHhHHHHHHHHH-hhhcccccc-cccHHHHHHHHHHHHhcCCccceeeccch
Confidence 33567777765542 12344332 22222 3342 223466654 7899999999999997 6555554 4777
Q ss_pred hHHHHHHHHHHHhhcCCcceEEEEcCCCCcCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHh----CCC
Q 004968 477 FLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDR 552 (721)
Q Consensus 477 Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~----~~~ 552 (721)
.+..++..| ..+...+.||+++..........-..||......+++.+-.+ .+...+++++..+++.|++. ..+
T Consensus 78 G~~n~~~gi-~~A~~~~~Pvl~isg~~~~~~~~~~~~q~~d~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~A~~~~~G 155 (181)
T d1ozha2 78 GCSNLITGM-ATANSEGDPVVALGGAVKRADKAKQVHQSMDTVAMFSPVTKY-AIEVTAPDALAEVVSNAFRAAEQGRPG 155 (181)
T ss_dssp HHHTTHHHH-HHHHHHTCCEEEEEEECCTTTC------CCCHHHHHGGGCSE-EEECCSGGGHHHHHHHHHHHHHSSSCC
T ss_pred hhhhhhhhH-HHHhhcCCceeeeecccchhhccccccccccccccccccchh-eeccCchhHHHHHHHHHHHHHhhCCCc
Confidence 777666665 455677899998874332211122457777777888887666 45667777777777777652 346
Q ss_pred CEEEEecCCC
Q 004968 553 PVCFRYPRGA 562 (721)
Q Consensus 553 P~~ir~~r~~ 562 (721)
|++|-+|...
T Consensus 156 PV~l~iP~Dv 165 (181)
T d1ozha2 156 SAFVSLPQDV 165 (181)
T ss_dssp EEEEEEEHHH
T ss_pred cEEEEcChHH
Confidence 9999998754
|
| >d2ji7a2 c.36.1.5 (A:7-194) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Oxalyl-CoA decarboxylase species: Oxalobacter formigenes [TaxId: 847]
Probab=93.00 E-value=0.64 Score=42.67 Aligned_cols=120 Identities=11% Similarity=0.050 Sum_probs=79.5
Q ss_pred hCCCcEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecHhhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCc
Q 004968 440 KFPERYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCG 515 (721)
Q Consensus 440 ~fp~R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~ 515 (721)
+.+-+++.+ -.|++++.+|.|.+.. |...+|. +..+....++..| ..+...+.|++++.....- .|..-..||.
T Consensus 39 ~~~i~~i~~-~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~gl-~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~q~ 116 (188)
T d2ji7a2 39 DDGQRFYSF-RHEQHAGYAASIAGYIEGKPGVCLTVSAPGFLNGVTSL-AHATTNCFPMILLSGSSEREIVDLQQGDYEE 116 (188)
T ss_dssp HTTCEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHHHHHHH-HHHHHHTCCEEEEEEECCHHHHHTTCCCTTC
T ss_pred hCCCEEEEe-cccchhhhHHHHHHhhhcccceeeccccccccccchhH-HHHHHhcccceEEeccCchhhhcccccccce
Confidence 345678876 7999999999999997 6555553 4777777777665 4556679999998732211 1222234666
Q ss_pred HHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHH----hCCCCEEEEecCCC
Q 004968 516 AFDITFMSCLPNMIVMAPSDEDELVDMVATVAS----IDDRPVCFRYPRGA 562 (721)
Q Consensus 516 ~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~----~~~~P~~ir~~r~~ 562 (721)
.....+++.+-.+ .+...+++++...++.|++ -..+|++|-+|...
T Consensus 117 ~d~~~~~~~~tk~-~~~v~~~~~i~~~~~~A~~~a~~~~~GPV~l~iP~dv 166 (188)
T d2ji7a2 117 MDQMNVARPHCKA-SFRINSIKDIPIGIARAVRTAVSGRPGGVYVDLPAKL 166 (188)
T ss_dssp CCHHHHTGGGSSE-EEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHHH
T ss_pred eeeecccCCcchh-hhccccccccHHHHHHHHHHHhCCCCceEEEEcChhH
Confidence 6667788877665 3555666666666666554 23469999888643
|
| >d1ybha2 c.36.1.5 (A:86-280) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Acetohydroxyacid synthase catalytic subunit species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=92.84 E-value=0.62 Score=43.11 Aligned_cols=151 Identities=15% Similarity=0.146 Sum_probs=92.4
Q ss_pred ccHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh---HHHHHhCCCcEeeccccHHHHHHHHHHHHhC-CCeeEEE-ecH
Q 004968 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL---QLFQEKFPERYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPS 475 (721)
Q Consensus 401 ~~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l---~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~-G~~p~~~-tys 475 (721)
.+-.+++.+.|.+..- +.++. +.|+..+ +.|. +.++--+-....|++++.+|-|.|.. |...++. +..
T Consensus 12 ~~Gad~i~~~L~~~Gv--~~vFg----ipG~~~~~l~~al~-~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~G 84 (195)
T d1ybha2 12 RKGADILVEALERQGV--ETVFA----YPGGASMEIHQALT-RSSSIRNVLPRHEQGGVFAAEGYARSSGKPGICIATSG 84 (195)
T ss_dssp EEHHHHHHHHHHTTTC--CEEEE----CCCGGGHHHHHHHH-HCSSCEECCCSSHHHHHHHHHHHHHHHSSCEEEEECTT
T ss_pred ccHHHHHHHHHHHCCC--CEEEE----cCCccHHHHHHHHh-hhcceeecccccHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4556677666654321 22332 2333322 3343 34544444568999999999999987 5444443 477
Q ss_pred hhHHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHh----
Q 004968 476 AFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI---- 549 (721)
Q Consensus 476 ~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~---- 549 (721)
+....++..+ ..+...+.||+++...... .|. ..+|......+++.+-.+ .....+++++...++.|+..
T Consensus 85 pG~~N~~~gl-~~A~~~~~Pvlvi~g~~~~~~~~~--~~~q~~d~~~~~~~~tk~-~~~v~~~~~~~~~~~~A~~~a~~~ 160 (195)
T d1ybha2 85 PGATNLVSGL-ADALLDSVPLVAITGQVPRRMIGT--DAFQETPIVEVTRSITKH-NYLVMDVEDIPRIIEEAFFLATSG 160 (195)
T ss_dssp HHHHTTHHHH-HHHHHHTCCEEEEEEECCGGGTTT--TCTTCCCHHHHHGGGSSE-EEECCCGGGHHHHHHHHHHHHHSS
T ss_pred hHHHHHHHHH-HHHHHcCCCEEEEecCCcHHHhcc--Ccccccchhhhhcccccc-hhhcchHhhcchHHHHHHHHHhcC
Confidence 7777666665 4556779999988743332 233 234555555677765544 36667777777777776652
Q ss_pred CCCCEEEEecCCC
Q 004968 550 DDRPVCFRYPRGA 562 (721)
Q Consensus 550 ~~~P~~ir~~r~~ 562 (721)
..+|++|-+|...
T Consensus 161 r~GPV~l~iP~Dv 173 (195)
T d1ybha2 161 RPGPVLVDVPKDI 173 (195)
T ss_dssp SCCEEEEEEEHHH
T ss_pred CCCcEEEECChHH
Confidence 3579999888754
|
| >d1t9ba3 c.36.1.9 (A:461-687) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Acetohydroxyacid synthase catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.75 E-value=0.5 Score=44.93 Aligned_cols=151 Identities=15% Similarity=0.143 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHcCCCeEEEecCCCCccCh--HHHHHhCCCcEeecccc--HHHHHHHHHHHHhC-CCeeEEEe--cHhh
Q 004968 405 DCFIEALVMEAEKDKDIVVVHAGMEMDLSL--QLFQEKFPERYFDVGMA--EQHAVTFSAGLACG-GLKPFCII--PSAF 477 (721)
Q Consensus 405 ~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l--~~f~~~fp~R~~d~GIa--E~~~v~~AaGlA~~-G~~p~~~t--ys~F 477 (721)
..+.+.|.+.+.++.+=.++..|.+..+-. ..|.-+.|.|++..+.- =...+..|.|++++ .-||++++ -..|
T Consensus 14 ~~~~~~L~~~~~~~~~d~ivv~D~G~~~~~~~~~~~~~~p~~~i~~~~~g~mG~~~~aaiGa~lA~p~r~Vv~i~GDGsf 93 (227)
T d1t9ba3 14 QTVIKKLSKVANDTGRHVIVTTGVGQHQMWAAQHWTWRNPHTFITSGGLGTMGYGLPAAIGAQVAKPESLVIDIDGDASF 93 (227)
T ss_dssp HHHHHHHHHHHHTTCSCEEEEECSSHHHHHHHHHSCCCSTTCEECCCSSCCTTCHHHHHHHHHHHCTTSEEEEEEEHHHH
T ss_pred HHHHHHHHHhcccCCCCEEEEECCcHHHHHHHHHcCCCCCceEeeecccccchhhHHHHHHHHhcCCCCeEEEeCCCccc
Confidence 345577888777654433444465422111 22333457888864322 12345556666655 34677766 4667
Q ss_pred HHHHHHHHHHHhhcCCcceEEEEc-CCCCc----------C-CCCCCcCcHHHH-HHHccCCCcEEEeeCCHHHHHHHHH
Q 004968 478 LQRAYDQVVNDVDQQRLPVRFVIT-SAGLV----------G-SDGPTQCGAFDI-TFMSCLPNMIVMAPSDEDELVDMVA 544 (721)
Q Consensus 478 l~ra~dqi~~~~a~~~lpVv~v~~-~~G~~----------G-~dG~TH~~~~di-a~~~~iPnl~V~~Psd~~E~~~~l~ 544 (721)
+...-| +..+...++|+++++- ..|+. + ....+....-|. .+...+ |+.-+.-.+++|+...++
T Consensus 94 ~m~~~E--L~Ta~r~~l~i~iiV~nN~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~-G~~~~~v~~~~el~~al~ 170 (227)
T d1t9ba3 94 NMTLTE--LSSAVQAGTPVKILILNNEEQGMVTQWQSLFYEHRYSHTHQLNPDFIKLAEAM-GLKGLRVKKQEELDAKLK 170 (227)
T ss_dssp HHHGGG--HHHHHHHTCCCEEEEEECSSCHHHHHHHHHHSTTCCCSCCCCCCCHHHHHHHT-TCEEEEECSHHHHHHHHH
T ss_pred ccchHH--HHHHhhcCCceEEEEEecccccchhHHHhhhhccccccccCCCCCHHHHHhhc-ccceEeeCCHHHHHHHHH
Confidence 655444 2355677888777763 33320 1 011122222222 233333 667778899999999999
Q ss_pred HHHHhCCCCEEEEec
Q 004968 545 TVASIDDRPVCFRYP 559 (721)
Q Consensus 545 ~a~~~~~~P~~ir~~ 559 (721)
.|++ .++|++|-..
T Consensus 171 ~a~~-~~~p~lieV~ 184 (227)
T d1t9ba3 171 EFVS-TKGPVLLEVE 184 (227)
T ss_dssp HHHH-CSSCEEEEEE
T ss_pred HHHH-CCCCEEEEEE
Confidence 9987 6899998653
|
| >d1q6za3 c.36.1.9 (A:342-524) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Benzoylformate decarboxylase species: Pseudomonas putida [TaxId: 303]
Probab=91.52 E-value=0.094 Score=48.39 Aligned_cols=147 Identities=13% Similarity=0.163 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHcCCCeEEEecCCCCccC-h-HHHHHhCCCcEeeccccH-HHHHHHHHHHHhCC-CeeEEEec--HhhH
Q 004968 405 DCFIEALVMEAEKDKDIVVVHAGMEMDLS-L-QLFQEKFPERYFDVGMAE-QHAVTFSAGLACGG-LKPFCIIP--SAFL 478 (721)
Q Consensus 405 ~~~~~~L~~~~~~d~~iv~i~ad~~~~~~-l-~~f~~~fp~R~~d~GIaE-~~~v~~AaGlA~~G-~~p~~~ty--s~Fl 478 (721)
..+..+|.+.+.+| .+++. |.+.... + ..+.-..|.+++..+-.= -.++..|.|++++- -++++++. .+|+
T Consensus 15 ~~~~~~l~~~l~~d-~ivv~--d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~~p~AiGa~la~p~~~vv~i~GDG~f~ 91 (183)
T d1q6za3 15 ETVFDTLNDMAPEN-AIYLN--ESTSTTAQMWQRLNMRNPGSYYFCAAGGLGFALPAAIGVQLAEPERQVIAVIGDGSAN 91 (183)
T ss_dssp HHHHHHHHHHSCTT-CEEEE--ECTTSHHHHHHHCCCCSSSCEEECTTCCTTSHHHHHHHHHHHCTTSCEEEEEEHHHHT
T ss_pred HHHHHHHHHhCCCC-cEEEE--cCCchHHHHHHHHhhccccccccccCCCcccchhHHHhhhhhccccceEEeccccccc
Confidence 35666677766544 34433 3332211 1 222233467777553211 23456677776653 56777764 5565
Q ss_pred HHHHHHHHHHhhcCCcceEEEE-cCCCCcCC--------CCCCc----CcHHHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 004968 479 QRAYDQVVNDVDQQRLPVRFVI-TSAGLVGS--------DGPTQ----CGAFDITFMSCLPNMIVMAPSDEDELVDMVAT 545 (721)
Q Consensus 479 ~ra~dqi~~~~a~~~lpVv~v~-~~~G~~G~--------dG~TH----~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~ 545 (721)
....+ + ..+...++|+++++ ...+. |. .+..+ ....|..-++.--|+..+...+++|+...++.
T Consensus 92 ~~~~e-l-~ta~~~~lpv~~iV~nN~~~-g~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~ 168 (183)
T d1q6za3 92 YSISA-L-WTAAQYNIPTIFVIMNNGTY-GALRWFAGVLEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQLKGSLQE 168 (183)
T ss_dssp TTGGG-H-HHHHHHTCCCEEEEEECSBC-HHHHHHHHHHTCCSCCSCBCCCCCHHHHHHHHTCEEEEESSHHHHHHHHHH
T ss_pred cccHH-H-HHHHHhCCCEEEEEEecccc-chhhhhhhcccccCcccccCCCccHHHHHHHcCCEEEEECCHHHHHHHHHH
Confidence 43333 2 34566788977655 44332 10 01111 11112222222225677888999999999999
Q ss_pred HHHhCCCCEEEEe
Q 004968 546 VASIDDRPVCFRY 558 (721)
Q Consensus 546 a~~~~~~P~~ir~ 558 (721)
|++ .++|++|-.
T Consensus 169 a~~-~~gp~lieV 180 (183)
T d1q6za3 169 ALS-AKGPVLIEV 180 (183)
T ss_dssp HHT-CSSCEEEEE
T ss_pred HHh-CCCcEEEEE
Confidence 986 689998853
|
| >d1ovma2 c.36.1.5 (A:3-180) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Indole-3-pyruvate decarboxylase species: Enterobacter cloacae [TaxId: 550]
Probab=90.82 E-value=3.1 Score=37.19 Aligned_cols=152 Identities=11% Similarity=0.033 Sum_probs=83.3
Q ss_pred cHHHHHHHHHHHHHHcCCCeEEEecCCCCccCh---HHHHHhCCCcEeeccccHHHHHHHHHHHHhCCCeeEE-EecHhh
Q 004968 402 TYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL---QLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFC-IIPSAF 477 (721)
Q Consensus 402 ~~~~~~~~~L~~~~~~d~~iv~i~ad~~~~~~l---~~f~~~fp~R~~d~GIaE~~~v~~AaGlA~~G~~p~~-~tys~F 477 (721)
+..+++.+.|.+.. -+.++. +.|+.-+ +.+.++-.=|++.+ -.|++++.+|.|.|...-+|.| .+..+.
T Consensus 4 tvad~iv~~L~~~G--V~~vFg----~pG~~~~~l~~al~~~~~i~~i~~-rhE~~A~~~A~gyar~t~~~~v~~t~GpG 76 (178)
T d1ovma2 4 CVADYLLDRLTDCG--ADHLFG----VPGDYNLQFLDHVIDSPDICWVGC-ANELNASYAADGYARCKGFAALLTTFGVG 76 (178)
T ss_dssp BHHHHHHHHHHHTT--CCEEEE----CCCGGGHHHHHHHHHCSSCEEEEC-SSHHHHHHHHHHHHHHHSCEEEEEETTHH
T ss_pred cHHHHHHHHHHHCC--CCEEEE----eCChhHHHHHHHHHhCCCeEEEEe-ccchhhHHHHHHHHhcCCCceEEeecccc
Confidence 44566666655432 122333 3333322 34444322366664 7999999999999998555644 457777
Q ss_pred HHHHHHHHHHHhhcCCcceEEEEcCCCC--cCCC-CCCcC-----cHHHHHHHccCCCcEEEe--eCCHHHHHHHHHHHH
Q 004968 478 LQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSD-GPTQC-----GAFDITFMSCLPNMIVMA--PSDEDELVDMVATVA 547 (721)
Q Consensus 478 l~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~d-G~TH~-----~~~dia~~~~iPnl~V~~--Psd~~E~~~~l~~a~ 547 (721)
+..++..| ..+...+.||+++...... .+.. ...|. ...-..+++.+..+.... +.+..|+...+..+.
T Consensus 77 ~~n~~~gl-~~A~~~~~Pvl~isg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~a~ 155 (178)
T d1ovma2 77 ELSAMNGI-AGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFYHMSEPITVAQAVLTEQNACYEIDRVLTTML 155 (178)
T ss_dssp HHHTHHHH-HHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCSHHHHHTGGGCSEEEECCTTTHHHHHHHHHHHHH
T ss_pred ccccchhh-hHHHhcCccEEEEecCCCchhhccccccccccccchhhhccccccccceeEEEeCcHHHHHHHHHHHHHHH
Confidence 77777665 4667789999998742221 1111 11121 112235667666654322 333334443444443
Q ss_pred HhCCCCEEEEecCCC
Q 004968 548 SIDDRPVCFRYPRGA 562 (721)
Q Consensus 548 ~~~~~P~~ir~~r~~ 562 (721)
. ..+|++|-+|...
T Consensus 156 ~-~~~Pv~i~iP~Dv 169 (178)
T d1ovma2 156 R-ERRPGYLMLPADV 169 (178)
T ss_dssp H-HTCCEEEEEEHHH
T ss_pred h-CCCCEEEEEChHH
Confidence 3 4689999887643
|
| >d2ihta3 c.36.1.9 (A:375-572) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Carboxyethylarginine synthase species: Streptomyces clavuligerus [TaxId: 1901]
Probab=90.74 E-value=0.12 Score=48.26 Aligned_cols=116 Identities=15% Similarity=0.225 Sum_probs=68.5
Q ss_pred HhCCCcEeeccc-c-HHHHHHHHHHHHhC-CCeeEEEe--cHhhHHHHHHHHHHHhhcCCcceEEEE-cCCCCcC-----
Q 004968 439 EKFPERYFDVGM-A-EQHAVTFSAGLACG-GLKPFCII--PSAFLQRAYDQVVNDVDQQRLPVRFVI-TSAGLVG----- 507 (721)
Q Consensus 439 ~~fp~R~~d~GI-a-E~~~v~~AaGlA~~-G~~p~~~t--ys~Fl~ra~dqi~~~~a~~~lpVv~v~-~~~G~~G----- 507 (721)
-..|.+|+..+- . =-.++..|.|++++ .-++++++ -.+|+...-+ + ..++..++|+++++ ...+. |
T Consensus 49 ~~~p~~~~~~~~~g~mG~~lp~aiGa~~a~p~~~Vv~i~GDGsf~~~~~e-l-~t~~~~~lpi~ivV~NN~~~-g~i~~~ 125 (198)
T d2ihta3 49 ADQPFGFLTSAGCSSFGYGIPAAIGAQMARPDQPTFLIAGDGGFHSNSSD-L-ETIARLNLPIVTVVVNNDTN-GLIELY 125 (198)
T ss_dssp CCSTTSEECCSSSCCTTCHHHHHHHHHHHSTTSCEEEEEEHHHHHHTGGG-H-HHHHHHTCCCEEEEEECSBC-HHHHHH
T ss_pred cCCCCeEEecCCcccchhHHHHHHHHhhhhcccceEeecccccccccchh-h-hhhhhhhhhhhHHHhhcccc-ceEeee
Confidence 345788887543 1 12346677777665 35666665 4667644333 3 34556789977766 33332 1
Q ss_pred ----CCC----CCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004968 508 ----SDG----PTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 508 ----~dG----~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~ 558 (721)
.++ .+....-|..-++.--|+.-+...+++|+...++.|++ .++|++|-.
T Consensus 126 q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~-~~~p~lIeV 183 (198)
T d2ihta3 126 QNIGHHRSHDPAVKFGGVDFVALAEANGVDATRATNREELLAALRKGAE-LGRPFLIEV 183 (198)
T ss_dssp HHHHHSSCCGGGTBCCCCCHHHHHHHTTCEEEECCSHHHHHHHHHHHHT-SSSCEEEEE
T ss_pred eccccccccccccccCCcchhhhccccCceEEEeCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 011 11112223333332236677788999999999999986 689999865
|
| >d1ozha3 c.36.1.9 (A:367-558) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Catabolic acetolactate synthase species: Klebsiella pneumoniae [TaxId: 573]
Probab=87.04 E-value=0.61 Score=42.92 Aligned_cols=146 Identities=12% Similarity=0.101 Sum_probs=78.6
Q ss_pred HHHHHHHHHHcCCCeEEEecCCCCcc-Ch-HHHHHhCCCcEeeccc--cHHHHHHHHHHHHhCC-CeeEEEe--cHhhHH
Q 004968 407 FIEALVMEAEKDKDIVVVHAGMEMDL-SL-QLFQEKFPERYFDVGM--AEQHAVTFSAGLACGG-LKPFCII--PSAFLQ 479 (721)
Q Consensus 407 ~~~~L~~~~~~d~~iv~i~ad~~~~~-~l-~~f~~~fp~R~~d~GI--aE~~~v~~AaGlA~~G-~~p~~~t--ys~Fl~ 479 (721)
+.+.|.+.+. ++.+++ .|.+..+ .. ..+....|.||+..+. +=-..+++|.|++++- -++++++ -.+|+.
T Consensus 10 v~~~L~~~l~--~d~ii~-~d~G~~~~~~~~~l~~~~p~~~~~~~~~g~mG~~l~~aiGa~la~p~~~vi~i~GDG~f~~ 86 (192)
T d1ozha3 10 IVRAMQDIVN--SDVTLT-VDMGSFHIWIARYLYTFRARQVMISNGQQTMGVALPWAIGAWLVNPERKVVSVSGDGGFLQ 86 (192)
T ss_dssp HHHHHHHHCC--TTEEEE-ECSSHHHHHHHHTGGGCCCSEEECCCTTCCTTCHHHHHHHHHHHSTTSEEEEEEEHHHHHH
T ss_pred HHHHHHHhCC--CCcEEE-EcCcHHHHHHHHhcccCCCceeecccccccccccccchhHHHhhcccccceeecccccccc
Confidence 4455555543 344433 3543211 11 2233344778776421 1113466777776662 4556655 466765
Q ss_pred HHHHHHHHHhhcCCcceEEEE-cCCCC--c--------CCCCCCcCcHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHH
Q 004968 480 RAYDQVVNDVDQQRLPVRFVI-TSAGL--V--------GSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVAS 548 (721)
Q Consensus 480 ra~dqi~~~~a~~~lpVv~v~-~~~G~--~--------G~dG~TH~~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~ 548 (721)
-..+ + ..+...++|+++++ ...++ . +..-.+.....|..-++.-=|+..+...+++|+...+++|++
T Consensus 87 ~~~e-l-~t~~~~~l~~~iiv~nN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~ 164 (192)
T d1ozha3 87 SSME-L-ETAVRLKANVLHLIWVDNGYNMVAIQEEKKYQRLSGVEFGPMDFKAYAESFGAKGFAVESAEALEPTLRAAMD 164 (192)
T ss_dssp HTTH-H-HHHHHHTCCEEEEEEECSBCHHHHHHHHHHHSSCCSCBCCCCCHHHHHHTTTSEEEECCSGGGHHHHHHHHHH
T ss_pred hhhh-H-HHHhhhcCceeEEEEcCCCccccccccccccCccccCcCCCCCHHHHHHHhccccEEeCCHHHHHHHHHHHHH
Confidence 4333 3 23455678877666 33333 1 000011111123333333347788899999999999999986
Q ss_pred hCCCCEEEEe
Q 004968 549 IDDRPVCFRY 558 (721)
Q Consensus 549 ~~~~P~~ir~ 558 (721)
.++|++|-.
T Consensus 165 -~~gp~lIeV 173 (192)
T d1ozha3 165 -VDGPAVVAI 173 (192)
T ss_dssp -SSSCEEEEE
T ss_pred -cCCcEEEEE
Confidence 689999854
|
| >d1zpda3 c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate decarboxylase species: Zymomonas mobilis [TaxId: 542]
Probab=86.23 E-value=0.49 Score=44.08 Aligned_cols=115 Identities=17% Similarity=0.162 Sum_probs=66.0
Q ss_pred CCcEeecccc-H-HHHHHHHHHHHhCC-CeeEEEe--cHhhHHHHHHHHHHHhhcCCcceEEEE-cCCCCc----CCCC-
Q 004968 442 PERYFDVGMA-E-QHAVTFSAGLACGG-LKPFCII--PSAFLQRAYDQVVNDVDQQRLPVRFVI-TSAGLV----GSDG- 510 (721)
Q Consensus 442 p~R~~d~GIa-E-~~~v~~AaGlA~~G-~~p~~~t--ys~Fl~ra~dqi~~~~a~~~lpVv~v~-~~~G~~----G~dG- 510 (721)
|.|++..+.. = ..+++.|.|++++- -++++++ -.+|+.-.-+ + ..++..++|+++++ ...|+. ..++
T Consensus 41 ~~~~~~~~~~g~mG~~l~aAiGa~la~p~~~vv~i~GDGsf~m~~~e-L-~Ta~~~~lpi~iiV~NN~~~g~~~~~~~~~ 118 (204)
T d1zpda3 41 GARVEYEMQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQE-V-AQMVRLKLPVIIFLINNYGYTIEVMIHDGP 118 (204)
T ss_dssp TCEEEECTTTCCTTTHHHHHHHHHHHCTTSEEEEEEEHHHHHHHGGG-H-HHHHHTTCCCEEEEEECSSCHHHHTTSCCG
T ss_pred CCeEEcCCCCcccchhhHHHHHHHHhCCCCceeccccccceeeeecc-c-chhhhcccccceEEEecccccccceecccc
Confidence 5577755432 1 13566777777753 4566665 4667643322 2 34566789987766 443431 1111
Q ss_pred --CCcCcHH-HHH--H----HccCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004968 511 --PTQCGAF-DIT--F----MSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 511 --~TH~~~~-dia--~----~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~ 558 (721)
..+...+ .++ + +..-.|+..+...++.|+...++.|+...++|++|-.
T Consensus 119 ~~~~~~~d~~~~~~~~~~~~~a~~~g~~~~~v~~~~el~~al~~al~~~~gp~lieV 175 (204)
T d1zpda3 119 YNNIKNWDYAGLMEVFNGNGGYDSGAAKGLKAKTGGELAEAIKVALANTDGPTLIEC 175 (204)
T ss_dssp GGCCCCCCHHHHHHHHHCTTSSSCCCCEEEEESBHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred ccccchhhhhhhhhhcCcchhhhccCccEEEecCHHHHHHHHHHHHHcCCCcEEEEE
Confidence 1111111 111 0 1122467788899999999999999866789999844
|
| >d1ybha3 c.36.1.9 (A:460-667) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Acetohydroxyacid synthase catalytic subunit species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=83.97 E-value=1.3 Score=41.13 Aligned_cols=114 Identities=12% Similarity=0.203 Sum_probs=66.6
Q ss_pred CCCcEeeccccH--HHHHHHHHHHHhCC-CeeEEEe--cHhhHHHHHHHHHHHhhcCCcceEEEEc-CCCCcCC------
Q 004968 441 FPERYFDVGMAE--QHAVTFSAGLACGG-LKPFCII--PSAFLQRAYDQVVNDVDQQRLPVRFVIT-SAGLVGS------ 508 (721)
Q Consensus 441 fp~R~~d~GIaE--~~~v~~AaGlA~~G-~~p~~~t--ys~Fl~ra~dqi~~~~a~~~lpVv~v~~-~~G~~G~------ 508 (721)
.|.||+..+--- ...+..|.|++++. -++++++ -.+|+...-| + .-+...++|+++++- ..|+ |.
T Consensus 41 ~~~~~~~~~~~g~mG~glpaaiGa~~A~p~~~Vi~i~GDGsf~m~~~E-l-~Ta~r~~lpi~iiV~NN~~~-g~i~~~q~ 117 (208)
T d1ybha3 41 KPRQWLSSGGLGAMGFGLPAAIGASVANPDAIVVDIDGDGSFIMNVQE-L-ATIRVENLPVKVLLLNNQHL-GMVMQWED 117 (208)
T ss_dssp STTSEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHTTTH-H-HHHHHTTCCEEEEEEECSBC-HHHHHHHH
T ss_pred CCceeccccccccchhhhhhHHHHHhcCCCCcEEEEccCCchhhhhhh-H-HHHHHhCCCEEEEEEecccc-ccceehhh
Confidence 478888655321 12455666666653 4566665 4667655444 2 355677999888773 3332 10
Q ss_pred ---CCCC---------cC--cHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004968 509 ---DGPT---------QC--GAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 509 ---dG~T---------H~--~~~dia~~~~iPnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~ 558 (721)
.+.. .. ..-|..-++.--|+.-+...+++|+...++.|++ .++|++|-.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~pd~~~iA~a~G~~~~~v~~~~el~~al~~a~~-~~~p~lIeV 180 (208)
T d1ybha3 118 RFYKANRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVTKKADLREAIQTMLD-TPGPYLLDV 180 (208)
T ss_dssp HHSTTCCCSCBCSCGGGTTSCSSCHHHHHHHTTCCEEEECBHHHHHHHHHHHHH-SSSCEEEEE
T ss_pred hcccccccccccccccccCCCCCCHHHhhccCCceEEEcCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 0000 00 0012222222236667788999999999999987 689999855
|
| >d1ovma3 c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Indole-3-pyruvate decarboxylase species: Enterobacter cloacae [TaxId: 550]
Probab=81.46 E-value=1.1 Score=41.36 Aligned_cols=114 Identities=11% Similarity=0.137 Sum_probs=63.1
Q ss_pred CCcEeecccc--HHHHHHHHHHHHhCC-CeeEEEe--cHhhHHHHHHHHHHHhhcCCcceEEEE-cCCCC--c----CCC
Q 004968 442 PERYFDVGMA--EQHAVTFSAGLACGG-LKPFCII--PSAFLQRAYDQVVNDVDQQRLPVRFVI-TSAGL--V----GSD 509 (721)
Q Consensus 442 p~R~~d~GIa--E~~~v~~AaGlA~~G-~~p~~~t--ys~Fl~ra~dqi~~~~a~~~lpVv~v~-~~~G~--~----G~d 509 (721)
+.+++..+.. =-.+++.|.|++++- -|+++++ -..|+.-. ..+ ..+...++|+++++ ...|+ . +.+
T Consensus 43 ~~~~~~~~~~g~mG~~l~~aiGa~la~p~~~vv~i~GDG~f~~~~-~eL-~ta~~~~l~i~iiV~nN~~~~~~~~~~~~~ 120 (196)
T d1ovma3 43 DVNFIVQPLWGSIGYTLAAAFGAQTACPNRRVIVLTGDGAAQLTI-QEL-GSMLRDKQHPIILVLNNEGYTVERAIHGAE 120 (196)
T ss_dssp SCEEECCTTTCCTTHHHHHHHHHHHHCTTSCEEEEEEHHHHHHHT-THH-HHHHHTTCCCEEEEEESSSCHHHHHHSCTT
T ss_pred CCeEEeCCCCccccccchhhHHHHHhhhccceecccccccceeec-ccc-cccccccccceEEEEecCccccchhhhccc
Confidence 3466654432 236677888888763 3455555 46676433 223 34567789987766 33332 1 111
Q ss_pred C---CCcCcHHH-HHHHccC-CCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004968 510 G---PTQCGAFD-ITFMSCL-PNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (721)
Q Consensus 510 G---~TH~~~~d-ia~~~~i-Pnl~V~~Psd~~E~~~~l~~a~~~~~~P~~ir~ 558 (721)
. .++...++ ++-...+ .+...+.-.++.|+...++.+++ .++|++|-.
T Consensus 121 ~~~~~~~~~~~~~~a~~~g~~~~~~~~~v~~~~el~~al~~a~~-~~gp~lIev 173 (196)
T d1ovma3 121 QRYNDIALWNWTHIPQALSLDPQSECWRVSEAEQLADVLEKVAH-HERLSLIEV 173 (196)
T ss_dssp CGGGCCCCCCGGGSTTTSCSSCCEEEEEECBHHHHHHHHHHHTT-CSSEEEEEE
T ss_pred cccccccccccchhHHhcCccccceeEEEecHHHHHHHHHHHHH-CCCcEEEEE
Confidence 1 11111111 1111111 23456677899999999999976 689999844
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| >d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: ROO-like flavoprotein TM0755, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=81.02 E-value=3.7 Score=35.20 Aligned_cols=104 Identities=9% Similarity=-0.124 Sum_probs=63.0
Q ss_pred EEEEechhhHHHHHHH----HHHHhCCCCeEEeecCccccccHHHHHHHhccCCeEEEEcCCCCCChHHHHHHHHH---h
Q 004968 591 ALLGYGAMVQNCLKAR----ALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIA---L 663 (721)
Q Consensus 591 ~Iva~Gs~v~~al~Aa----~~L~~~Gi~v~VId~~~l~PlD~e~i~~l~~~~~~vvvvEe~~~gG~gs~v~~~l~---~ 663 (721)
++|-|||+.....++| +.|++.|+.+.++++.....-|...+.+-+.+++.+++.-.-+.|++...+..++. .
T Consensus 6 v~IiY~S~tGnTe~~A~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~d~iiigspt~~~~~~~~~~~~l~~~~~ 85 (148)
T d1vmea1 6 VTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIFGVSTYEAEIHPLMRFTLLEIID 85 (148)
T ss_dssp EEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEEEECEETTEECHHHHHHHHHHHH
T ss_pred EEEEEECCCcHHHHHHHHHHHHHHhCCCeEEEEecccccccchhHhhhhHHHCCEeEEEecccCCccCchHHHHHHHHhh
Confidence 4566677665555544 55566899999999998887777666665667777766554444655555555543 2
Q ss_pred cCCCCCCCceEEEecCCccccC-CCHHHHHHHcC
Q 004968 664 DGLLDSGVKWRPIVLPDNYIEH-ASPTQQLALAG 696 (721)
Q Consensus 664 ~~~~~~~~~~~~~g~~d~f~~~-g~~~~l~~~~g 696 (721)
..+ ...++..+|--+.|... ....+.++..|
T Consensus 86 ~~~--~~k~~~~fgs~g~~~~a~~~~~~~l~~~G 117 (148)
T d1vmea1 86 KAN--YEKPVLVFGVHGWAPSAERTAGELLKETK 117 (148)
T ss_dssp HCC--CCCEEEEEEECCCCCCC-CCHHHHHHTSS
T ss_pred ccc--CCCEEEEEEcCCCccchHHHHHHHHHHcC
Confidence 222 13456666654444333 24556666665
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