Citrus Sinensis ID: 004969

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-
Protein Sequence
MATDIHTLEQRYFDSCRRHDVLPNPAILSGFFKADVRKSQNEPCTLEIILEYLKDIDFQPLLEVCMQIGATEIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQNWLCCDDTGNSSGSSDQDDKTDFSQLNICSSFGAYGNVVINPDSQILVEDSSDDSEVDFSIQHREYDYLELLSNLVPQLDGEIDLWNEVSFDAFSNQNEEESSAGVLARCTADVSLKYISCHASPICFEKHYRDYMIASLPKLKFLDNLPIRKVDRERATITYSQYFEHLPYGRKHKESVVSILQQREIKASQTRGKTSRHKTSYPSGMSQYFYTRSLCAAKVGSSAWPCLHTLTVSGNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQHSRPSRSMGG
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccccccEEEEEEccccccccHHHHHHHHHccccccEEEEEcccccccccHHHHHHHHHHHccEEEEEEcccccHHHHHHHHHHcccccEEEEEccccccccccccccccccEEEEEccccccccccccccccccccEEEEccccccccHHHHHHHHHcccccEEEEEEEccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHccccccccccEEHHHHHHHHHHHcccccccccccccccccccEEEEEccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccccEEEEEcccccEEEEEEccccEEEEEcccccEEcccccccccccEEEEEEccccccEEEEEcccccEEEEEccccccccccccccccEEEccccccEEEEEEcccccEEEEEEccccEEEEEcccccccccccccccccEEEEEEccccccEEEEccccccEEEEEccccccccEEcccccccEEEEEEcccccEEEEEcccccEEEEEccccccccccccEEEEEEcccccEEEEEcccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccEEEEEEcccccccHHHHHHHHHHcccccEEEEEEEcccccEccHHHHHHHHHHHHHHccEEEcccccccHHHHHHHHHccccEEEEEEcccHHHHEcccccHHHEEEEEEcccccccccccccHcccccHHEEcccccHHHHHHHHHHHHHHcHHHHHHHHHHHEccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccHccccccccccccEcHHHEcccccccccccccccHHHHcccccccccHHcccccccccHHHHHHHHHHHHcccccHcccccccHccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccEEEEccccccEEEEEccccEEEEEEcccccEEEEEccccccccEEEEEEccccccEEEEEccccEEEEEEcccccccccEEccccEEEEccccEEEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEcccccccEEEEEEcccccEEEEEccccccEEEEEccccccccEEEEcccccEEEEEEcccccEEEEEccccEEEEEEccccccccccHHHHHHHcccccccHHHHHccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MATDIHTLEQRYFDscrrhdvlpnpailsgffkadvrksqnepcTLEIILEYLKDIDFQPLLEVCMQIGATEieavdvrsgtscmlTGEFALSLMHAIDQKLRvvdlhdssfgKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFkrihtlnldystsltsfkedcfscmpnliclsMCETRVGNLWTTIAALSKLPSLAELRFqnwlccddtgnssgssdqddktdfsqlnicssfgaygnvvinpdsqilvedssddsevdfsiqHREYDYLELLSNLvpqldgeidlwnevsfdafsnqneeessagvlARCTADVSLKYIschaspicfekHYRDYMIaslpklkfldnlpirkvdreraTITYSQYfehlpygrkhKESVVSILQQREIKasqtrgktsrhktsypsgmsqyFYTRSLCAAkvgssawpclhtltvsgnhmgdenrsfrprqfeyhpsisclmvfgtLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCwlkkypskliagsdngslklydirhmppsirgmhygagtvtfdefdQLTSVHVNSMDELFLAsgysknialydinsgRRLQVFADMHKEHINvvkfsnhspsifatssfdqdvklwdlrqkpiqpcytassskgnvmvcfspddhyllgkgsgtSMFVqslrgdpfrdfNMSILAaytrpsskseIVKVNLLASTdhcdkecshgqhsrpsrsmgg
Flexible Loop (DISEMBL)
MATDIHTLEQRYFDSCRRHDVLPNPAILSGFFKADVRKSQNEPCTLEIILEYLKDIDFQPLLEVCMQIGATEIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQNWLCCDDTGNSSGSSDQDDKTDFSQLNICSSFGAYGNVVINPDSQILVEDSSDDSEVDFSIQHREYDYLELLSNLVPQLDGEIDLWNEVSFDAFSNQNEEESSAGVLARCTADVSLKYISCHASPICFEKHYRDYMIASlpklkfldnlpirkvdrerATITYsqyfehlpygrKHKESVVSILQQReikasqtrgktsrhktsypsgmsqYFYTRSLCAAKVGSSAWPCLHTLTVSGNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPcytassskgnVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDFNMSILAaytrpsskseIVKVNLLASTDHcdkecshgqhsrpsrsmgg
Low Complexity Region (SEG)
MATDIHTLEQRYFDSCRRHDVLPNPAILSGFFKADVRKSQNEPCTLEIILEYLKDIDFQPLLEVCMQIGATEIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQNWLCCDDTGNSSGSSDQDDKTDFSQLNICSSFGAYGNVVINPDSQILvedssddsevdfsIQHREYDYLELLSNLVPQLDGEIDLWNEVSFDAFSNQNEEESSAGVLARCTADVSLKYISCHASPICFEKHYRDYMIASLPKLKFLDNLPIRKVDRERATITYSQYFEHLPYGRKHKESVVSILQQREIKASQTRGKTSRHKTSYPSGMSQYFYTRSLCAAKVGSSAWPCLHTLTVSGNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGeivvvnhenenivSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQHSRPSRSMGG
Disordered region (IsUnstruct)
******TLEQRYFDSCRRHDVLPNPAILSGFFKADVRKSQNEPCTLEIILEYLKDIDFQPLLEVCMQIGATEIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQNWLCCDD****************SQLNICSSFGAYGNVVINPDSQILV********VDFSIQHREYDYLELLSNLVPQLDGEIDLWNEVSFDAFS********AGVLARCTADVSLKYISCHASPICFEKHYRDYMIASLPKLKFLDNLPIRKVDRERATITYSQYFEHLPYGRKHKESVVSI**************************SQYFYTRSLCAAKVGSSAWPCLHTLTVSGNHM******FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDFNMSILAAYTR*****EIVKVNLLA***********************
Disordered Region (DISOPRED)
***DIHTLEQRYFDSCRRHDVLPNPAILSGFFKADV*****EPCTLEIILEYLKDIDFQPLLEVCMQIGATEIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQNWLCC******************SQLNI********************************IQHREYDYLELLSNLVPQLDGEIDLWN***************************SLKYISCHASPICFEKHYRDYMIASLPKLKFLDNLPI****RERATITYSQYFEHLPYGRKHKESVVSIL****************************************SSAWPCLHTLTVSGNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQ***TASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQHS********
Disordered Region (DISEMBL)
MATDIHTLEQRYFDSCRRHDVLPNPAILSGFFKADVRKSQNEPCTLEIILEYLKDIDFQPLLEVCMQIGATEIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQNWLCCDDT************TDFSQLNICSSFGAYGNVVINPDSQILVEDSSDDSEVDFSIQHREYDYLELLSNLVPQLDGEIDLWNEVSFDAFS***********LARCTADVSLKYISCHASPICFEKHYRDYMIASLPKLKFLDNLPIRKVDRERATITYSQYFEHLPYGRKHKESVVSILQQREI***************YPSGMSQYFYTRSLCAAKVGSSAWPCLHTLTVSGNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC******************
Disordered Region (DISPRO)
*ATDIHTLEQRYFDSCRRHDVLPNPAILSGFFKADVRKSQNEPCTLEIILEYLKDIDFQPLLEVCMQIGATEIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQNWLCCDDT*************DFSQLNICSSFGAYGNVVINPDSQILVEDSSDDSEVDFSIQHREYDYLELLSNLVPQLDGEIDLWNEVSFDAF******ESSAGVLARCTADVSLKYISCHASPICFEKHYRDYMIASLPKLKFLDNLPIRKVDRERATITYSQYFEHLPYGRKHKESVVSILQQREIK******KTSRHKTSYPSGMSQYFYTRSLCAAKVGSSAWPCLHTLTVSGNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLAS**********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MATDIHTLEQRYFDSCRRHDVLPNPAILSGFFKADVRKSQNEPCTLEIILEYLKDIDFQPLLEVCMQIGATEIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQNWLCCDDTGNSSGSSDQDDKTDFSQLNICSSFGAYGNVVINPDSQILVEDSSDDSEVDFSIQHREYDYLELLSNLVPQLDGEIDLWNEVSFDAFSNQNEEESSAGVLARCTADVSLKYISCHASPICFEKHYRDYMIASLPKLKFLDNLPIRKVDRERATITYSQYFEHLPYGRKHKESVVSILQQREIKASQTRGKTSRHKTSYPSGMSQYFYTRSLCAAKVGSSAWPCLHTLTVSGNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQHSRPSRSMGG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	721	2.2.26 [Sep-21-2011]
Q92466	427	DNA damage-binding protei	yes	no	0.310	0.524	0.25	2e-08
Q66JG1	501	DNA damage-binding protei	yes	no	0.251	0.361	0.264	7e-07
Q7ZUV2	694	Katanin p80 WD40 repeat-c	yes	no	0.264	0.275	0.265	5e-06
Q0VBY8	426	DNA damage-binding protei	yes	no	0.266	0.450	0.229	8e-06
O74340	436	Protein sof1 OS=Schizosac	yes	no	0.203	0.337	0.238	9e-06
O61585	690	Katanin p80 WD40 repeat-c	yes	no	0.162	0.169	0.305	1e-05
P40066	365	Nucleoporin GLE2 OS=Sacch	yes	no	0.145	0.287	0.319	1e-05
Q9XF57	317	Peroxisome biogenesis pro	no	no	0.167	0.381	0.270	2e-05
Q6P3H7	424	Histone-binding protein R	no	no	0.289	0.492	0.248	4e-05
Q5M7K4	425	Histone-binding protein R	no	no	0.289	0.491	0.244	4e-05

>sp|Q92466|DDB2_HUMAN DNA damage-binding protein 2 OS=Homo sapiens GN=DDB2 PE=1 SV=1

 Score = 61.6 bits (148), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 107/244 (43%), Gaps = 20/244 (8%)

Query: 421 TRSLCAAKVGSSAWPCLHT-LTVSGNHMGDENRSF--------RPRQFEYHPSISCLMVF 471
            R+L   K+G ++WP +   L  S  H  D  R          R     +HP+    +  
Sbjct: 70  VRTLHQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAV 129

Query: 472 GTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM 531
           G+  G+I++ N   ++  ++I   GA  S+ GL +     ++  A S  G+ +L D +  
Sbjct: 130 GSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG- 188

Query: 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADM 591
             +I  +   + T+         S+ V++   + +      N+ L +++ G+ L     M
Sbjct: 189 --NILRVFASSDTINI----WFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNL-RM 240

Query: 592 HKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM--VCFSPDD 649
           HK+ +  V  +       AT+S DQ VK+WDLRQ   +  +  S    + +   CFSPD 
Sbjct: 241 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 300

Query: 650 HYLL 653
             LL
Sbjct: 301 ARLL 304

Required for DNA repair. Binds to DDB1 to form the UV-damaged DNA-binding protein complex (the UV-DDB complex). The UV-DDB complex may recognize UV-induced DNA damage and recruit proteins of the nucleotide excision repair pathway (the NER pathway) to initiate DNA repair. The UV-DDB complex preferentially binds to cyclobutane pyrimidine dimers (CPD), 6-4 photoproducts (6-4 PP), apurinic sites and short mismatches. Also appears to function as the substrate recognition module for the DCX (DDB1-CUL4-X-box) E3 ubiquitin-protein ligase complex DDB1-CUL4-ROC1 (also known as CUL4-DDB-ROC1 and CUL4-DDB-RBX1). The DDB1-CUL4-ROC1 complex may ubiquitinate histone H2A, histone H3 and histone H4 at sites of UV-induced DNA damage. The ubiquitination of histones may facilitate their removal from the nucleosome and promote subsequent DNA repair. The DDB1-CUL4-ROC1 complex also ubiquitinates XPC, which may enhance DNA-binding by XPC and promote NER. Isoform D1 and isoform D2 inhibit UV-damaged DNA repair.
Homo sapiens (taxid: 9606)

>sp|Q66JG1|DDB2_XENTR DNA damage-binding protein 2 OS=Xenopus tropicalis GN=ddb2 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 87/193 (45%), Gaps = 12/193 (6%)

Query: 459 FEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS 518
            E+HP+    +  G+  G+I++ ++E  N  + IP  GA   + G+ +    P++L   S
Sbjct: 127 LEWHPTHPNTVAVGSKGGDIILWDYEELN-NTLIPGIGAGGCITGMKFDPFNPNQLYTSS 185

Query: 519 DNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYD 578
             GS  L D         G +    T T D      S+ V++  +  +      N+ L +
Sbjct: 186 VAGSTVLQDFS-------GRNIQTFTNTEDWAMWYCSLDVSAERQCVVTGDNVGNVVLLE 238

Query: 579 INSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPC--YTASS 636
              G+ +     +HK+ +  V+F+     + A++S DQ VKLWDLR    +    YT   
Sbjct: 239 -TCGKEIWKLR-LHKKKVTHVEFNPRCDWLLASASVDQTVKLWDLRNIKDKSSYLYTLPH 296

Query: 637 SKGNVMVCFSPDD 649
           ++G     FSP D
Sbjct: 297 ARGVNSAYFSPWD 309

Required for DNA repair. Binds to ddb1 to form the UV-damaged DNA-binding protein complex (the UV-DDB complex). The UV-DDB complex may recognize UV-induced DNA damage and recruit proteins of the nucleotide excision repair pathway (the NER pathway) to initiate DNA repair. Also appears to function as the substrate recognition module for a DCX (DDB1-CUL4-X-box) E3 ubiquitin-protein ligase complex which may ubiquitinate histone H2A, histone H3 and histone H4 at sites of UV-induced DNA damage. The ubiquitination of histones may facilitate their removal from the nucleosome and promote subsequent DNA repair.

Xenopus tropicalis (taxid: 8364)

>sp|Q7ZUV2|KTNB1_DANRE Katanin p80 WD40 repeat-containing subunit B1 OS=Danio rerio GN=katnb1 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 94/215 (43%), Gaps = 24/215 (11%)

Query: 453 SFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSY-------IPSFGAMNSVLGLC 505
           S++ ++   H S    +V G   G ++    E+  +  +       I S     S +G  
Sbjct: 10  SWKLQEIVAHSSNVSSLVLGKSSGRLLATGGEDCRVNIWAVSKPNCIMSLTGHTSAVGCI 69

Query: 506 WLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELF 565
                  +++AGS +GSL+L+D+         M + A          ++S+  + M E  
Sbjct: 70  QFNSSEERVVAGSLSGSLRLWDLEAAKILRTLMGHKA---------SISSLDFHPMGEYL 120

Query: 566 LASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSP--SIFATSSFDQDVKLWDL 623
            +     NI L+D+   R+  VF   +K H   V+    SP     A++S D  VKLWDL
Sbjct: 121 ASGSVDSNIKLWDVR--RKGCVF--RYKGHTQAVRCLAFSPDGKWLASASDDSTVKLWDL 176

Query: 624 RQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG 658
               +   +T+ +S  NV V F P++ YLL  GS 
Sbjct: 177 IAGKMITEFTSHTSAVNV-VQFHPNE-YLLASGSA 209

Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.

Danio rerio (taxid: 7955)

>sp|Q0VBY8|DDB2_BOVIN DNA damage-binding protein 2 OS=Bos taurus GN=DDB2 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 93/218 (42%), Gaps = 26/218 (11%)

Query: 421 TRSLCAAKVGSSAWPCLHTL-------TVSGNHMGDENRSF--RPRQFEYHPSISCLMVF 471
            R+L   K+G++AWP L          +++   +  +   F  R     +HP+    +  
Sbjct: 69  VRALHQHKLGTAAWPSLQQGLQQSFLNSLASYRIFQKAAPFDRRATSLAWHPTHPSTLAV 128

Query: 472 GTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM 531
           G+  G+I++ N   ++  ++I   GA  S+ G+ +     ++    S  G+ +L D +  
Sbjct: 129 GSKGGDILLWNFGIKDKPTFIKGIGAGGSITGMKFNPLNTNQFFTSSMEGTTRLQDFK-- 186

Query: 532 PPSIRGMHYGAGTVTFDEFDQ----LTSVHVNSMDELFLASGYSKNIALYDINSGRRLQV 587
                    G     F   D       S+ V+    + +      ++ L +++ GR L  
Sbjct: 187 ---------GNTLRVFASSDTCNVWFCSLDVSVKSRVVVTGDNVGHVILLNMD-GRELWN 236

Query: 588 FADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQ 625
              MHK+ +  V  +     + AT+S DQ VK+WDLRQ
Sbjct: 237 L-RMHKKKVTHVALNPCCDWLLATASVDQTVKIWDLRQ 273

Required for DNA repair. Binds to DDB1 to form the UV-damaged DNA-binding protein complex (the UV-DDB complex). The UV-DDB complex may recognize UV-induced DNA damage and recruit proteins of the nucleotide excision repair pathway (the NER pathway) to initiate DNA repair. The UV-DDB complex preferentially binds to cyclobutane pyrimidine dimers (CPD), 6-4 photoproducts (6-4 PP), apurinic sites and short mismatches. Also appears to function as the substrate recognition module for the DCX (DDB1-CUL4-X-box) E3 ubiquitin-protein ligase complex DDB1-CUL4-ROC1 (also known as CUL4-DDB-ROC1 and CUL4-DDB-RBX1). The DDB1-CUL4-ROC1 complex may ubiquitinate histone H2A, histone H3 and histone H4 at sites of UV-induced DNA damage. The ubiquitination of histones may facilitate their removal from the nucleosome and promote subsequent DNA repair. The DDB1-CUL4-ROC1 complex also ubiquitinates XPC, which may enhance DNA-binding by XPC and promote NER.

Bos taurus (taxid: 9913)

>sp|O74340|DCA13_SCHPO Protein sof1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sof1 PE=3 SV=1

 Score = 52.8 bits (125), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 74/159 (46%), Gaps = 12/159 (7%)

Query: 466 SCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKL 525
           + ++    +D  IV+ +    + ++ + +    NS+    W        +AGS++ +L +
Sbjct: 200 TSVLASAGMDRSIVIYDLRTSSPLTKLITKLRTNSI---SWNPMEAFNFVAGSEDHNLYM 256

Query: 526 YDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRL 585
           YD+R++    R +H     V  D    + SV  +   + F++  Y K I +Y++  G   
Sbjct: 257 YDMRNLK---RALH-----VYKDHVSAVMSVDFSPTGQEFVSGSYDKTIRIYNVREGHSR 308

Query: 586 QVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLR 624
            V+     + +  VKFS  +  IF+ S  D +V+LW  R
Sbjct: 309 DVYHTKRMQRVTAVKFSMDAQYIFSGSD-DSNVRLWRAR 346

Required for ribosomal RNA processing.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|O61585|KTNB1_STRPU Katanin p80 WD40 repeat-containing subunit B1 OS=Strongylocentrotus purpuratus GN=KATNB1 PE=1 SV=1

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 4/121 (3%)

Query: 555 SVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614
           SV  NS +EL +A   S  + +YD+   + ++     H+  I  + F        A+ S 
Sbjct: 64  SVKFNSSEELVVAGSQSGTMKIYDLEPAKIVRTLTG-HRNSIRCMDFHPFG-EFVASGST 121

Query: 615 DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR-GDPFRD 673
           D +VKLWD+R+K     Y   S + N M+ FSPD  +L+     T++ +  L  G  F++
Sbjct: 122 DTNVKLWDVRRKGCIYTYKGHSDQVN-MIKFSPDGKWLVTASEDTTIKLWDLTMGKLFQE 180

Query: 674 F 674
           F
Sbjct: 181 F 181

Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.

Strongylocentrotus purpuratus (taxid: 7668)

>sp|P40066|GLE2_YEAST Nucleoporin GLE2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GLE2 PE=1 SV=1

 Score = 52.4 bits (124), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 17/122 (13%)

Query: 516 AGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKN-I 574
           A S +G ++++D+++  P  R  H  +  V    +         S D   +ASG   N +
Sbjct: 54  ASSWDGKVRIWDVQNGVPQGRAQHESSSPVLCTRW---------SNDGTKVASGGCDNAL 104

Query: 575 ALYDINSGRRLQVFADMHKEHINVVKFSNHSPS---IFATSSFDQDVKLWDLRQKPIQPC 631
            LYDI SG+  Q+   MH   I V++F    PS      T S+D+ +K WD+RQ   QP 
Sbjct: 105 KLYDIASGQTQQI--GMHSAPIKVLRFVQCGPSNTECIVTGSWDKTIKYWDMRQP--QPV 160

Query: 632 YT 633
            T
Sbjct: 161 ST 162

Functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. It is specifically important for nuclear mRNA export.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9XF57|PEX7_ARATH Peroxisome biogenesis protein 7 OS=Arabidopsis thaliana GN=PEX7 PE=1 SV=2

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 68/137 (49%), Gaps = 16/137 (11%)

Query: 494 SFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS--IRGMHYGAGTVTFDEFD 551
           S+   ++V  +CW + + S LIA   +GS+K+YD    PPS  IR     A  V   +++
Sbjct: 56  SYDTADAVYDVCWSESHDSVLIAAIGDGSVKIYDTALPPPSNPIRSFQEHAREVQSVDYN 115

Query: 552 QLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPS---I 608
                   +  + FL S +   + L+ ++    ++ F    KEH   V  +  +P    +
Sbjct: 116 P-------TRRDSFLTSSWDDTVKLWAMDRPASVRTF----KEHAYCVYQAVWNPKHGDV 164

Query: 609 FATSSFDQDVKLWDLRQ 625
           FA++S D  +++WD+R+
Sbjct: 165 FASASGDCTLRIWDVRE 181

Import receptor for peroxisomal-targeting signal two (PTS2). A receptor-cargo complex composed of PEX5, PEX7, a PTS1-containing protein and a PTS2-containing protein is targeted to peroxisomes during import.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6P3H7|RBBP4_DANRE Histone-binding protein RBBP4 OS=Danio rerio GN=rbbp4 PE=2 SV=3

 Score = 50.8 bits (120), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 102/233 (43%), Gaps = 24/233 (10%)

Query: 440 LTVSGNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSF---- 495
           + +  NH G+ NR+       Y P   C++   T   +++V ++  ++     PS     
Sbjct: 117 IEIKINHEGEVNRA------RYMPQNPCIIATKTPTSDVLVFDY-TKHPSKPDPSGECTP 169

Query: 496 -----GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEF 550
                G      GL W     S L++ SD+ ++ L+DI  +P    G    A T+     
Sbjct: 170 DLRLRGHQKEGYGLSWNPNLRSCLLSASDDHTICLWDISTVPK--EGKIVDAKTIFTGHT 227

Query: 551 DQLTSVHVNSMDE-LFLASGYSKNIALYDI--NSGRRLQVFADMHKEHINVVKFSNHSPS 607
             +  V  + + E LF +    + + ++D   N+  +     D H   +N + F+ +S  
Sbjct: 228 AVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHAVDAHTAEVNCLSFNPYSEF 287

Query: 608 IFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGT 659
           I AT S D+ V LWDLR   ++  ++  S K  +  V +SP +  +L   SGT
Sbjct: 288 ILATGSADKTVALWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILA-SSGT 338

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA.

Danio rerio (taxid: 7955)

>sp|Q5M7K4|RBBP4_XENTR Histone-binding protein RBBP4 OS=Xenopus tropicalis GN=rbbp4 PE=2 SV=3

 Score = 50.8 bits (120), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 101/233 (43%), Gaps = 24/233 (10%)

Query: 440 LTVSGNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSF---- 495
           + +  NH G+ NR+       Y P   C++   T   +++V ++  ++     PS     
Sbjct: 117 IEIKINHEGEVNRA------RYMPQNPCIIATKTPSSDVLVFDY-TKHPSKPDPSGECNP 169

Query: 496 -----GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEF 550
                G      GL W       L++ SD+ ++ L+DI  +P    G    A T+     
Sbjct: 170 DLRLRGHQKEGYGLSWNPNLSGNLLSASDDHTICLWDISAVPK--EGKVVDAKTIFTGHT 227

Query: 551 DQLTSVHVNSMDE-LFLASGYSKNIALYDI--NSGRRLQVFADMHKEHINVVKFSNHSPS 607
             +  V  + + E LF +    + + ++D   N+  +     D H   +N + F+ +S  
Sbjct: 228 AVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEF 287

Query: 608 IFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGT 659
           I AT S D+ V LWDLR   ++  ++  S K  +  V +SP +  +L   SGT
Sbjct: 288 ILATGSADKTVALWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILAS-SGT 338

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	721
224105657	783	predicted protein [Populus trichocarpa]	0.890	0.819	0.686	0.0
224060678	817	predicted protein [Populus trichocarpa]	0.908	0.801	0.655	0.0
255555221	794	nucleotide binding protein, putative [Ri	0.904	0.821	0.667	0.0
356534295	804	PREDICTED: uncharacterized protein LOC10	0.890	0.798	0.643	0.0
296083092	814	unnamed protein product [Vitis vinifera]	0.884	0.783	0.660	0.0
147861826	806	hypothetical protein VITISV_026521 [Viti	0.894	0.800	0.638	0.0
356574293	787	PREDICTED: uncharacterized protein LOC10	0.866	0.794	0.630	0.0
359475456	794	PREDICTED: uncharacterized protein LOC10	0.894	0.812	0.641	0.0
359480634	804	PREDICTED: uncharacterized protein LOC10	0.873	0.783	0.559	0.0
296087358	742	unnamed protein product [Vitis vinifera]	0.828	0.804	0.550	0.0

>gi|224105657|ref|XP_002313890.1| predicted protein [Populus trichocarpa] gi|222850298|gb|EEE87845.1| predicted protein [Populus trichocarpa]

 Score =  909 bits (2349), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/651 (68%), Positives = 520/651 (79%), Gaps = 9/651 (1%)

Query: 11  RYFDSCRRHDVLPNPAILSGFFKADVRKSQNEPCTLEIILEYLKDIDFQPLLEVCMQIGA 70
           RY DSC+R DVLPN  ILSGFFKA+V+KS NE C+LEIIL++LKDID  PLL+VC  I  
Sbjct: 1   RYIDSCKRRDVLPNTEILSGFFKAEVKKSCNELCSLEIILDHLKDIDVPPLLDVCATIET 60

Query: 71  TEIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVL 130
           +EIEAVD+R+G SC L GE ALSLM A +QKLR VDL DS FGKDF+R LSQRGL C++L
Sbjct: 61  SEIEAVDIRNGPSCSLNGECALSLMRAFNQKLRAVDLQDSPFGKDFLRELSQRGLACQIL 120

Query: 131 NLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTT 190
           NLRSS FRKLNM G+F +IHTLNLD+STSLTSF EDCF+CMPNLICLSMCETRV NLWTT
Sbjct: 121 NLRSSHFRKLNMAGKFMQIHTLNLDFSTSLTSFLEDCFTCMPNLICLSMCETRVANLWTT 180

Query: 191 IAALSKLPSLAELRFQNWLCCDDTGNSSGSS-DQDDKTDFSQLNICSSFGAYGNVVINPD 249
           I+ALSKL  L ELRFQ WLC D    S+ S  + +D+ D      C+  G     + + +
Sbjct: 181 ISALSKLSCLVELRFQKWLCNDSASPSASSGGNLEDQPDVGLPISCTDIGEQ---LTDIE 237

Query: 250 SQILVEDSSDDS----EVDFSIQHREYDYLELLSNLVPQLDGEIDLWNEVSFDAFSNQNE 305
            +  +   +D++    EVDFS   RE+ Y +LL+N     + +++L NEVS  A  NQ +
Sbjct: 238 EETYLNPGTDEAFRNFEVDFSSNWREFGYTDLLANFSSGWNRQVNLQNEVSSGASLNQ-K 296

Query: 306 EESSAGVLARCTADVSLKYISCHASPICFEKHYRDYMIASLPKLKFLDNLPIRKVDRERA 365
           EES  G   R  ADV LKYI  HASPICFEKHYR+YMIASLP LK LDNLP+RK+DRERA
Sbjct: 297 EESLTGSFGRHIADVPLKYIPRHASPICFEKHYREYMIASLPNLKVLDNLPVRKIDRERA 356

Query: 366 TITYSQYFEHLPYGRKHKESVVSILQQREIKASQTRGKTSRHKTSYPSGMSQYFYTRSLC 425
            +T+SQYFE+LPY RKHKESVVSIL +REIK +++  ++   K SY  G SQYFYTRSL 
Sbjct: 357 AVTFSQYFEYLPYNRKHKESVVSILHKREIKETRSHIQSKNQKLSYSHGNSQYFYTRSLG 416

Query: 426 AAKVGSSAWPCLHTLTVSGNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHEN 485
           AAKVGSSAWP LH+L+VSG  +GD +RSFRPRQFEYHPS+S LMVFGTLDGE+VVVNHEN
Sbjct: 417 AAKVGSSAWPFLHSLSVSGCDLGDGSRSFRPRQFEYHPSLSSLMVFGTLDGEVVVVNHEN 476

Query: 486 ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTV 545
             +V Y+PS GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDI H+PP++ G + GAG++
Sbjct: 477 GKVVRYVPSLGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIEHLPPTVTGRYLGAGSI 536

Query: 546 TFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHS 605
           TFD+FDQLTSVH+NS DELFLASGYSKN+ALYDIN GRR+QVF DMH+EHINVVKFSNHS
Sbjct: 537 TFDDFDQLTSVHINSTDELFLASGYSKNVALYDINYGRRIQVFTDMHREHINVVKFSNHS 596

Query: 606 PSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKG 656
           PSIFATSSFDQDVKLWDLR KPI+PCYT SSS+GNVMVCFSPDDHYLL   
Sbjct: 597 PSIFATSSFDQDVKLWDLRLKPIRPCYTTSSSRGNVMVCFSPDDHYLLASA 647

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060678|ref|XP_002300252.1| predicted protein [Populus trichocarpa] gi|222847510|gb|EEE85057.1| predicted protein [Populus trichocarpa]

 Score =  898 bits (2321), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/682 (65%), Positives = 529/682 (77%), Gaps = 27/682 (3%)

Query: 1   MATDI-----HTLEQRYFDSCRRHDVLPNPAILSGFFKADVRKSQNEPCTLEIILEYLKD 55
           MATDI      TLEQ Y DSC+RH VLPN  ILSGF KA+V+KS NE C+LEIIL++L+D
Sbjct: 1   MATDIPSFNISTLEQMYIDSCKRHGVLPNTEILSGFLKAEVKKSCNEICSLEIILDHLED 60

Query: 56  IDFQPLLEVCMQIGATEIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKD 115
           ID  PLL+VC  I  +EIE VD+R+G +C L  E+ALSLM A +QKL+VVDL D  FGKD
Sbjct: 61  IDVPPLLDVCATIETSEIEVVDIRNGPNCTLHVEYALSLMRAFNQKLQVVDLQDLPFGKD 120

Query: 116 FIR----NLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCM 171
           F+R     LSQ+GL C++LNLRSS FR LNM G+F +IHTLNLD+STSLTSF+EDCF+CM
Sbjct: 121 FLRFILRELSQKGLACQILNLRSSHFRNLNMAGKFMQIHTLNLDFSTSLTSFQEDCFTCM 180

Query: 172 PNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQNWLCCDDTGNSSGS-----SDQDDK 226
           P L CLSMCETRV NLWTTIAALSKL SL ELRFQ W+CC+D+ + S S      DQ D 
Sbjct: 181 PILTCLSMCETRVANLWTTIAALSKLSSLVELRFQKWICCNDSASPSASSGGNLEDQPDV 240

Query: 227 TDF-------SQLNICSSFG-----AYGNVVINPDSQILVEDSSDDSEVDFSIQHREYDY 274
            +        S LN  +  G     ++ ++      Q ++EDSSDD+EVDFS   +E+DY
Sbjct: 241 RELLTDIDEESFLNQGTDEGTGNVFSFNDIATGQQVQSMMEDSSDDNEVDFSSYWQEFDY 300

Query: 275 LELLSNLVPQLDGEIDLWNEVSFDAFSNQNEEESSAGVLARCTADVSLKYISCHASPICF 334
           ++LL+N     + +++L +E+S    S   +EES  G   R  ADV  KYIS HASPICF
Sbjct: 301 MDLLANFSSGWNRQVNLQSELS-SGTSRNKKEESLHGSFGRHVADVPSKYISHHASPICF 359

Query: 335 EKHYRDYMIASLPKLKFLDNLPIRKVDRERATITYSQYFEHLPYGRKHKESVVSILQQRE 394
           EKHYR+YMIASLP LK LDNLP+RK+D ERA +T+SQYFE+LPY RKHKESVVSIL +RE
Sbjct: 360 EKHYREYMIASLPNLKVLDNLPVRKIDSERAAVTFSQYFEYLPYNRKHKESVVSILHKRE 419

Query: 395 IKASQTRGKTSRHKTSYPSGMSQYFYTRSLCAAKVGSSAWPCLHTLTVSGNHMGDENRSF 454
           IK +++   +   K SY  G S Y YTRSLCAAK+GSSAWP LH+L+VSG  +GD +RSF
Sbjct: 420 IKDTRSHMLSKNQKPSYSHGNSLYSYTRSLCAAKLGSSAWPLLHSLSVSGCDLGDGSRSF 479

Query: 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKL 514
           RPRQFEYHPS+S LMVFGTLDGE+VVVNHENE +V Y+ S GAMNSVLGLCWLKKYPSK 
Sbjct: 480 RPRQFEYHPSLSSLMVFGTLDGEVVVVNHENEKVVRYVSSLGAMNSVLGLCWLKKYPSKF 539

Query: 515 IAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNI 574
           IAGSD+G LKLYDI HMPP++ GM+  AG++TFD+FDQLTSVHVNS DELFLASGYSKN+
Sbjct: 540 IAGSDSGLLKLYDIEHMPPTVTGMYSAAGSITFDDFDQLTSVHVNSTDELFLASGYSKNV 599

Query: 575 ALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTA 634
           ALYDINSGRR+QVF D+H+EHINVVKFSNHSPS+FATSSFDQDVKLWDLRQKPIQPCYT 
Sbjct: 600 ALYDINSGRRIQVFTDVHREHINVVKFSNHSPSVFATSSFDQDVKLWDLRQKPIQPCYTT 659

Query: 635 SSSKGNVMVCFSPDDHYLLGKG 656
           S S+GNVMVCFSPDD YLL   
Sbjct: 660 SVSRGNVMVCFSPDDQYLLASA 681

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555221|ref|XP_002518647.1| nucleotide binding protein, putative [Ricinus communis] gi|223542028|gb|EEF43572.1| nucleotide binding protein, putative [Ricinus communis]

 Score =  897 bits (2319), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/656 (66%), Positives = 529/656 (80%), Gaps = 4/656 (0%)

Query: 1   MATDIHTLEQRYFDSCRRHDVLPNPAILSGFFKADVRKSQNEPCTLEIILEYLKDIDFQP 60
           MA DI TL+  Y +SC RH VLPN ++LSGFF+A+V+KS NE   LEI L+ LKD DF P
Sbjct: 1   MAIDILTLQNLYIESCGRHGVLPNTSVLSGFFEAEVKKSCNELRNLEIFLDQLKDFDFLP 60

Query: 61  LLEVCMQIGATEIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKDFIRNL 120
           LL+VC  I  +EIEA+D+ +G+S +L GE+AL+L+ A +QKLR+VDL DS + KDF+R L
Sbjct: 61  LLDVCKSIETSEIEAIDIHNGSSSVLNGEYALALIRAFNQKLRIVDLQDSLYEKDFLREL 120

Query: 121 SQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMC 180
           SQ GL C+VLNLRSSR R LN+ GEF RIHTLNLD++TSLTSF EDCF+CMPNLICLSMC
Sbjct: 121 SQGGLSCQVLNLRSSRLRNLNLSGEFMRIHTLNLDFNTSLTSFWEDCFACMPNLICLSMC 180

Query: 181 ETRVGNLWTTIAALSKLPSLAELRFQNWLCCDDTGNSSGSSDQ--DDKTDFSQLNICSSF 238
            TRV NLWTT+AALSKL SL EL FQ WLCC++TG+SS  S    D++ +FSQLN  S+ 
Sbjct: 181 ATRVANLWTTVAALSKLSSLVELSFQKWLCCNETGSSSAPSSGKSDEQCEFSQLNSFSNN 240

Query: 239 GAYG-NVVINPDSQILVEDSSDDSEVDFSIQHREYDYLELLSNLVPQLDGEIDLWNEVSF 297
            A   ++  N D  +  E++  + E+DFS    E+ Y++ LS++    + + +L +EVSF
Sbjct: 241 EAPSIDIGENTDPNLSTEEAFRNIEMDFSSYWEEHGYMDSLSSVSLGSNRQANLQDEVSF 300

Query: 298 DAFSNQNEEESSAGVLARCTADVSLKYISCHASPICFEKHYRDYMIASLPKLKFLDNLPI 357
               N+N+E S  G L R  ADV+L YIS HASP+C+EKHYR+YMIAS+P LK LDNLPI
Sbjct: 301 GNMCNKNDE-SMPGALTRDIADVALTYISSHASPVCYEKHYREYMIASMPHLKTLDNLPI 359

Query: 358 RKVDRERATITYSQYFEHLPYGRKHKESVVSILQQREIKASQTRGKTSRHKTSYPSGMSQ 417
           RK+DRE+A +T+SQYFE+LPY RK+KESVVSILQ+REIK S++  +T  HK SYP   SQ
Sbjct: 360 RKIDREKAAVTFSQYFEYLPYKRKYKESVVSILQKREIKESRSCLRTENHKPSYPCRNSQ 419

Query: 418 YFYTRSLCAAKVGSSAWPCLHTLTVSGNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGE 477
           YFYTRS CAAKVGSSAWP LH+L+VS   +G   R FRPRQFEYHPSIS L VFGTLDGE
Sbjct: 420 YFYTRSFCAAKVGSSAWPFLHSLSVSKCDLGGGRRCFRPRQFEYHPSISSLFVFGTLDGE 479

Query: 478 IVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRG 537
           +VVVNHENE +V+Y+PS GAMNSVLGLCWLKKYPSKLIAGSDNGSL LYD+ HMPP++ G
Sbjct: 480 VVVVNHENEKLVNYVPSLGAMNSVLGLCWLKKYPSKLIAGSDNGSLNLYDVEHMPPTVSG 539

Query: 538 MHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHIN 597
           M+ GAG+VTFD+FDQLTSVHVN+ DELFLASGYS+N+ALYDI  GR++Q+F DMH+EHIN
Sbjct: 540 MYTGAGSVTFDDFDQLTSVHVNATDELFLASGYSRNVALYDIQCGRQIQMFTDMHREHIN 599

Query: 598 VVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLL 653
           VVKFSNHSPS+FATSSFD+DVKLWDLRQKPIQPCYT SSS+GNVMVCFSPDDHYLL
Sbjct: 600 VVKFSNHSPSVFATSSFDRDVKLWDLRQKPIQPCYTTSSSRGNVMVCFSPDDHYLL 655

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534295|ref|XP_003535692.1| PREDICTED: uncharacterized protein LOC100806443 [Glycine max]

 Score =  888 bits (2295), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/682 (64%), Positives = 521/682 (76%), Gaps = 40/682 (5%)

Query: 1   MATDIHTLEQRYFDSCRRHDVLPNPAILSGFFKADVRKSQNEPCTLEIILEYLKDIDFQP 60
           M  DI TLE RY DSCRRHDV PN +ILS  FKA+V+KS +E C+LEI+++ LKD D  P
Sbjct: 1   MVIDIETLEDRYIDSCRRHDVFPNSSILSSLFKAEVKKSNHELCSLEILIDDLKDADIAP 60

Query: 61  LLEVCMQIGATEIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKDFIRNL 120
           L ++CM   A+EIEAVDVR+ +SC+L GE+ALSLM AI+QKLRVV L D SFGKDF+R++
Sbjct: 61  LFDLCMNFDASEIEAVDVRNESSCVLNGEYALSLMRAINQKLRVVHLQDPSFGKDFLRDI 120

Query: 121 SQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMC 180
           SQRGL C+VL LR SRFRKLN +GEF  IHTLNLD+S+SLTSF+EDCF+CMPNL+ LSMC
Sbjct: 121 SQRGLACQVLTLRCSRFRKLNFMGEFMHIHTLNLDFSSSLTSFQEDCFNCMPNLMRLSMC 180

Query: 181 ETRVGNLWTTIAALSKLPSLAELRFQNWLCCDDTGNS--SGSSDQDDKTDFSQLNICS-- 236
           +TR+ NLWTT+AALSKLPSL ELRFQ W  C+D   S  S S   DD  DFS L+     
Sbjct: 181 DTRITNLWTTVAALSKLPSLIELRFQYWQYCNDAVTSFISSSGKSDDTADFSLLDSVPFI 240

Query: 237 ----------------------SFGAYGNVVINPDSQILVEDSSDDSEVDFSIQHREYDY 274
                                 +F ++   VIN D Q +VEDSSDDSEVDF+ +H +Y  
Sbjct: 241 GEPYTYTTELTDPNFNAEDPLRNFYSFDEEVINHDVQSMVEDSSDDSEVDFTSRHHKY-- 298

Query: 275 LELLSNLVPQLDGEIDLWNEVSFDAFSNQNEEESSAGVLARCTADVSLKYISCHASPICF 334
              LS++ P    E+ L NE       N++ EES         ADVS+KY+S HASPIC+
Sbjct: 299 --WLSDVFPGWSSEVPLQNE-------NEDGEESLQAAFTDSNADVSMKYMSRHASPICY 349

Query: 335 EKHYRDYMIASLPKLKFLDNLPIRKVDRERATITYSQYFEHLPYGRKHKESVVSILQQRE 394
           EKHYR++MIASLP LK LDN+PIRK+D+ERAT  +SQYFE+LPY  KHKESVVSILQ+RE
Sbjct: 350 EKHYREFMIASLPNLKNLDNMPIRKIDKERATGIFSQYFEYLPYKWKHKESVVSILQKRE 409

Query: 395 IKASQTRGKTSRHKTSYPSGMSQYFYTRSLCAAKVGSSAWPCLHTLTVSGNHMGDENRSF 454
           IK+   + ++S+H+ SYPSG SQYFY+RSL AAK+GSS WP LH L+  G  +   ++ F
Sbjct: 410 IKSVHNKVQSSKHRLSYPSGKSQYFYSRSLSAAKLGSSTWPILHPLSFVGCEL---DKGF 466

Query: 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKL 514
            PRQFEYHPS S LMVFGTLDGE+VV+NHE E+I+SYIPS GAMNSVLGLCWLKKYPSKL
Sbjct: 467 HPRQFEYHPSDSSLMVFGTLDGEVVVINHETEHILSYIPSLGAMNSVLGLCWLKKYPSKL 526

Query: 515 IAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNI 574
           IAGSDNGSLKLYDI H+P  + G+H   G VTFDEFDQLTSVHVNSMDELFLASGYS+N+
Sbjct: 527 IAGSDNGSLKLYDIYHIPRKVTGLHGNFGCVTFDEFDQLTSVHVNSMDELFLASGYSRNV 586

Query: 575 ALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTA 634
           ALYDINSG+RLQVF DMH+ HINVVKF+NHSPSIFATSSFD DVK+WDLRQKPI PC+T 
Sbjct: 587 ALYDINSGKRLQVFTDMHRGHINVVKFANHSPSIFATSSFDHDVKMWDLRQKPIHPCFTV 646

Query: 635 SSSKGNVMVCFSPDDHYLLGKG 656
           SSS+GNVMVCFSPDD Y+L   
Sbjct: 647 SSSRGNVMVCFSPDDQYILASA 668

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083092|emb|CBI22496.3| unnamed protein product [Vitis vinifera]

 Score =  879 bits (2270), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/659 (66%), Positives = 518/659 (78%), Gaps = 21/659 (3%)

Query: 1   MATDIHTLEQRYFDSCRRHDVLPNPAILSGFFKADVRKSQNEPCTLEIILEYLKDIDFQP 60
           MA DI TLE+RY DSCR+H   PN  +LS   KA V+++ +EPC++ + L+ +KDIDF P
Sbjct: 31  MAVDIPTLEERYVDSCRQHGAPPNTEVLSALLKAKVKRNNHEPCSMVVFLDRVKDIDFYP 90

Query: 61  LLEVCMQIGATEIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKDFIRNL 120
           LL++ M+I A+EI+AVD+ + +SC+L GE+ALSLM AI+QKLR+VDL D S GKDF+R+L
Sbjct: 91  LLDLLMEIDASEIDAVDIFNESSCVLNGEYALSLMRAINQKLRIVDLQDLSLGKDFLRDL 150

Query: 121 SQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMC 180
           SQRGL C+ LNLRSS FRKLN+IG+F ++HTLNLD+STSLTSF+EDCF+CMPNL CLSMC
Sbjct: 151 SQRGLTCQALNLRSSHFRKLNLIGKFMQMHTLNLDFSTSLTSFREDCFTCMPNLRCLSMC 210

Query: 181 ETRVGNLWTTIAALSKLPSLAELRFQNWLCCDDTGNSSGSS--DQDDKTDFSQLNICSSF 238
           ETRV NLWTTIAALSKLPSLAELRFQN LCC DTG    SS    +D+T        S F
Sbjct: 211 ETRVSNLWTTIAALSKLPSLAELRFQNCLCCYDTGPCPVSSGGKANDRT-------YSEF 263

Query: 239 GAYGNVVINPDSQILVEDSSDDSEVDFSIQHREYDYLELLSNLVPQLDGEIDLWNEVSFD 298
             + NV++NP+ Q   EDSSDDSEVDFS   +E+  +ELLSN V       DL +EV F 
Sbjct: 264 FLHNNVIMNPEFQNTTEDSSDDSEVDFSTHQQEFGLVELLSNAV-------DLQSEVPFC 316

Query: 299 AFSNQNEEESSAGVLARCT----ADVSLKYISCHASPICFEKHYRDYMIASLPKLKFLDN 354
               Q+EE S     +  +     D+ LKY+S H SPICFEKHYR+YMIASLP L  LDN
Sbjct: 317 TSWTQSEEVSLKDAFSSQSIPFLQDIMLKYVSHHPSPICFEKHYREYMIASLPHLNVLDN 376

Query: 355 LPIRKVDRERATITYSQYFEHLPYGRKHKESVVSILQQREIKASQTRGKTSRHKTSYPSG 414
           L I++++R+ A+  ++QYFE+LPY R  KE+VV ILQ REIKA   R +T + K S P G
Sbjct: 377 LLIKEIERDFASAIFAQYFEYLPYRRNRKENVVDILQMREIKAIHNRIQTPKKKPSCPPG 436

Query: 415 MSQYFYTRSLCAAKVGSSAWPCLHTLTVSGNHMGDENRSFRPRQFEYHPSISCLMVFGTL 474
            SQYFY+RSL AAKVGSS WP LH L++ GN  G E RSFRPRQFEYHPS S LMVFGTL
Sbjct: 437 RSQYFYSRSLGAAKVGSSPWPLLHPLSILGNDSGGE-RSFRPRQFEYHPSNSSLMVFGTL 495

Query: 475 DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534
           DG++VVVNHE+E IVSYIPS GAMNSVLGLCWLKK+PSKLIAGSDNGSLKLYDI+HM  +
Sbjct: 496 DGDVVVVNHESEKIVSYIPSLGAMNSVLGLCWLKKHPSKLIAGSDNGSLKLYDIQHMSST 555

Query: 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKE 594
           +  ++  AG+ TFDEFDQLTSVHVNS DELFLASGYSKN+ALYDINSGRRLQ+F DMH+E
Sbjct: 556 VADIYCSAGSATFDEFDQLTSVHVNSTDELFLASGYSKNVALYDINSGRRLQMFTDMHQE 615

Query: 595 HINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLL 653
           HINVVKF+NHSP +F TSSFDQDVK+WDLRQKP+QPCYTASSS+GNVM CFSPDDHYLL
Sbjct: 616 HINVVKFANHSPFLFVTSSFDQDVKMWDLRQKPMQPCYTASSSRGNVMACFSPDDHYLL 674

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147861826|emb|CAN78929.1| hypothetical protein VITISV_026521 [Vitis vinifera]

 Score =  870 bits (2248), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/683 (63%), Positives = 520/683 (76%), Gaps = 38/683 (5%)

Query: 1   MATDIHTLEQRYFDSCRRHDVLPNPAILSGFFKADVRKSQNEPCTLEIILEYLKDIDFQP 60
           MA DI TLE+RY DSCR+H   PN  +LS  FKA V+++ +EPC++ + L+ +KDIDF P
Sbjct: 1   MAVDIPTLEERYVDSCRQHGAPPNTEVLSALFKAKVKRNNHEPCSMVVFLDRVKDIDFYP 60

Query: 61  LLEVCMQIGATEIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKDFIRNL 120
           LL++ M+I A+EI+AVD+ + +SC+L GE+ALSLM AI+QKLR+VDL D S GKDF+R+L
Sbjct: 61  LLDLLMEIDASEIDAVDIFNESSCVLNGEYALSLMRAINQKLRIVDLQDLSLGKDFLRDL 120

Query: 121 SQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMC 180
           SQRGL C+ LNLRSS FRKLN+IG+F ++HTLNLD+STSLTSF+EDCF+CMPNL CLSMC
Sbjct: 121 SQRGLTCQALNLRSSHFRKLNLIGKFMQMHTLNLDFSTSLTSFREDCFTCMPNLRCLSMC 180

Query: 181 ETRVGNLWTTIAALSKLPSLAELRFQNWLCCDDTGNSSGSS--DQDDKT----------- 227
           ETRV NLWTTIAALSKLPSLAELRFQN LCC DTG    SS    +D+T           
Sbjct: 181 ETRVSNLWTTIAALSKLPSLAELRFQNCLCCYDTGPCPVSSGGKANDRTYSVQPQRGPLI 240

Query: 228 -------------DFSQLNICSSFGAYGNVVINPDSQILVEDSSDDSEVDFSIQHREYDY 274
                        + +       F  + NV++NP+ Q   EDSSDDSEVDFS   +E+  
Sbjct: 241 EAPSVDGWILGNQNSTAQEAFQEFFLHNNVIMNPEFQNTTEDSSDDSEVDFSTHQQEFGL 300

Query: 275 LELLSNLVPQLDGEIDLWNEVSFDAFSNQNEEESSAGVLARCTA----DVSLKYISCHAS 330
           +ELLSN V       DL +EV F     Q+EE S     +  +     D+ LKY+S H S
Sbjct: 301 VELLSNAV-------DLQSEVPFCTSWTQSEEVSLKDAFSSQSXPFLQDIMLKYVSHHPS 353

Query: 331 PICFEKHYRDYMIASLPKLKFLDNLPIRKVDRERATITYSQYFEHLPYGRKHKESVVSIL 390
           PICFEKHYR+YMIASLP L  LDNL I++++R+ A+  ++QYFE+LPY R  KE+VV IL
Sbjct: 354 PICFEKHYREYMIASLPHLNVLDNLLIKEIERDFASAIFAQYFEYLPYRRNRKENVVGIL 413

Query: 391 QQREIKASQTRGKTSRHKTSYPSGMSQYFYTRSLCAAKVGSSAWPCLHTLTVSGNHMGDE 450
           Q REIKA   R +T + K S P G SQYFY+RSL AAKVGSS WP LH L++ GN  G E
Sbjct: 414 QMREIKAIHNRIQTPKKKPSCPPGRSQYFYSRSLGAAKVGSSPWPLLHPLSILGNDSGGE 473

Query: 451 NRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKY 510
            RSFRPRQFEYHPS S LMVFGTLDG++VVVNHE+E IVSYIPS GAMNSVLGLCWLKKY
Sbjct: 474 -RSFRPRQFEYHPSNSSLMVFGTLDGDVVVVNHESEKIVSYIPSLGAMNSVLGLCWLKKY 532

Query: 511 PSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY 570
           PSKLIAGSDNGSLKLYDI+HM  ++  ++  AG+ TFDEFDQLTSVHVNS DELFLASGY
Sbjct: 533 PSKLIAGSDNGSLKLYDIQHMSSTVADIYCSAGSATFDEFDQLTSVHVNSTDELFLASGY 592

Query: 571 SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQP 630
           SKN+ALYDINSGRRLQ+F DMH+EHINVVKF+NHSP +F TSSFDQDVK+WDLRQKP+QP
Sbjct: 593 SKNVALYDINSGRRLQMFTDMHQEHINVVKFANHSPFLFVTSSFDQDVKMWDLRQKPMQP 652

Query: 631 CYTASSSKGNVMVCFSPDDHYLL 653
           CYTASSS+GNVM CFSPDDHYLL
Sbjct: 653 CYTASSSRGNVMACFSPDDHYLL 675

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574293|ref|XP_003555283.1| PREDICTED: uncharacterized protein LOC100811988 [Glycine max]

 Score =  867 bits (2241), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/682 (63%), Positives = 512/682 (75%), Gaps = 57/682 (8%)

Query: 1   MATDIHTLEQRYFDSCRRHDVLPNPAILSGFFKADVRKSQNEPCTLEIILEYLKDIDFQP 60
           M  DI +LE RY D CRRHDVLPN +ILS  FKA+V+KS +EPC++EI+++ LKD+D  P
Sbjct: 1   MVIDIESLEDRYIDFCRRHDVLPNSSILSSLFKAEVKKSNHEPCSMEILIDDLKDVDIAP 60

Query: 61  LLEVCMQIGATEIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKDFIRNL 120
           LL++CM +  +EIEAVDVR+ +S +L GE+ALSLM AI+QKLRVV L DSSFGKDF+R++
Sbjct: 61  LLDLCMNLDTSEIEAVDVRNESSSVLNGEYALSLMRAINQKLRVVHLQDSSFGKDFLRDI 120

Query: 121 SQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMC 180
           SQRGL C+VL LR SRFRKLN++GEF  IHTLNLD+S+SLTSF+EDCF+CMPNL+ LSMC
Sbjct: 121 SQRGLACQVLTLRCSRFRKLNLMGEFMHIHTLNLDFSSSLTSFQEDCFNCMPNLMRLSMC 180

Query: 181 ETRVGNLWTTIAALSKLPSLAELRFQNWLCCDDTGNS--SGSSDQDDKTDFSQLNICS-- 236
           +T++ NLWTT+AALSKLPSL ELRFQ    C+D   S    S   DD  DFS L+     
Sbjct: 181 DTQITNLWTTVAALSKLPSLIELRFQYLQYCNDAVTSFIPSSGKSDDTADFSPLDSVPFI 240

Query: 237 ----------------------SFGAYGNVVINPDSQILVEDSSDDSEVDFSIQHREYDY 274
                                 +F ++   VINPD Q +VEDSSDD              
Sbjct: 241 GEPHTDTTELTDPNFNAEDPLRNFYSFDEEVINPDVQSMVEDSSDD-------------- 286

Query: 275 LELLSNLVPQLDGEIDLWNEVSFDAFSNQNEEESSAGVLARCTADVSLKYISCHASPICF 334
                        ++ L NEV F    N++ EES  G      ADVS+KY+SCHASPIC+
Sbjct: 287 -------------KVPLQNEVWF-TLQNEDGEESLQGAFTDRIADVSMKYMSCHASPICY 332

Query: 335 EKHYRDYMIASLPKLKFLDNLPIRKVDRERATITYSQYFEHLPYGRKHKESVVSILQQRE 394
           EKHYR++MIASLP LK LDN+PIRK+D+ERAT  +SQYFE+LPY  KHKESVVSILQ+RE
Sbjct: 333 EKHYREFMIASLPNLKNLDNMPIRKIDKERATRIFSQYFEYLPYKWKHKESVVSILQKRE 392

Query: 395 IKASQTRGKTSRHKTSYPSGMSQYFYTRSLCAAKVGSSAWPCLHTLTVSGNHMGDENRSF 454
           IK+   + ++S+H+ SYPSG SQYFYTRSL AAK+GSS WP LH L++ G  +   ++ F
Sbjct: 393 IKSGHNKVQSSKHRPSYPSGKSQYFYTRSLSAAKLGSSTWPILHPLSLVGCEL---DKGF 449

Query: 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKL 514
            PRQFEYHPS S LMVFGTLDGE+VV+NHE E+IVSYIPS GAMNSVLGLCWLKKYPSKL
Sbjct: 450 HPRQFEYHPSDSSLMVFGTLDGEVVVINHETEHIVSYIPSLGAMNSVLGLCWLKKYPSKL 509

Query: 515 IAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNI 574
           IAGSDNGSLKLYDI H+P  + G+H   G VTFDEFDQLTSVHVNS DELFLASGYSKN+
Sbjct: 510 IAGSDNGSLKLYDIHHIPRKVTGIHGNFGCVTFDEFDQLTSVHVNSTDELFLASGYSKNV 569

Query: 575 ALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTA 634
           ALYDINSG+RLQVF DMH+ HINVVKF+NHS SIFATSSFD DVK+WDLRQKPI PC+T 
Sbjct: 570 ALYDINSGKRLQVFTDMHRGHINVVKFANHSQSIFATSSFDHDVKMWDLRQKPIHPCFTV 629

Query: 635 SSSKGNVMVCFSPDDHYLLGKG 656
           SSS+GNVMVCFSPDD Y+L   
Sbjct: 630 SSSRGNVMVCFSPDDQYILASA 651

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475456|ref|XP_002269406.2| PREDICTED: uncharacterized protein LOC100267918 [Vitis vinifera]

 Score =  846 bits (2186), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/662 (64%), Positives = 509/662 (76%), Gaps = 17/662 (2%)

Query: 1   MATDIHTLEQRYFDSCRRHDVLPNPAILSGFFKADVRKSQNEPCTLEIILEYLKDIDFQP 60
           MA DI TLE+RY DSCR+H   PN  +LS   KA V+++ +EPC++ + L+ +KDIDF P
Sbjct: 1   MAVDIPTLEERYVDSCRQHGAPPNTEVLSALLKAKVKRNNHEPCSMVVFLDRVKDIDFYP 60

Query: 61  LLEVCMQIGATEIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKDFIRNL 120
           LL++ M+I A+EI+AVD+ + +SC+L GE+ALSLM AI+QKLR+VDL D S GKDF+R+L
Sbjct: 61  LLDLLMEIDASEIDAVDIFNESSCVLNGEYALSLMRAINQKLRIVDLQDLSLGKDFLRDL 120

Query: 121 SQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMC 180
           SQRGL C+ LNLRSS FRKLN+IG+F ++HTLNLD+STSLTSF+EDCF+CMPNL CLSMC
Sbjct: 121 SQRGLTCQALNLRSSHFRKLNLIGKFMQMHTLNLDFSTSLTSFREDCFTCMPNLRCLSMC 180

Query: 181 ETRVGNLWTTIAALSKLPSLAELRFQNWLCCDDTGNSSGSS--DQDDKTDFSQLN---IC 235
           ETRV NLWTTIAALSKLPSLAELRFQN LCC DTG    SS    +D+T   Q     + 
Sbjct: 181 ETRVSNLWTTIAALSKLPSLAELRFQNCLCCYDTGPCPVSSGGKANDRTYSVQPQRGPLI 240

Query: 236 SSFGAYGNVVINPDSQILVEDSSDDSEVDFSIQHREYDYLELLSNLVPQLDGEIDLWNEV 295
            +    G ++ N +S           EVDFS   +E+  +ELLSN V       DL +EV
Sbjct: 241 EAPSVDGWILGNQNSTAQEAFQEFFFEVDFSTHQQEFGLVELLSNAV-------DLQSEV 293

Query: 296 SFDAFSNQNEEESSAGVLARCT----ADVSLKYISCHASPICFEKHYRDYMIASLPKLKF 351
            F     Q+EE S     +  +     D+ LKY+S H SPICFEKHYR+YMIASLP L  
Sbjct: 294 PFCTSWTQSEEVSLKDAFSSQSIPFLQDIMLKYVSHHPSPICFEKHYREYMIASLPHLNV 353

Query: 352 LDNLPIRKVDRERATITYSQYFEHLPYGRKHKESVVSILQQREIKASQTRGKTSRHKTSY 411
           LDNL I++++R+ A+  ++QYFE+LPY R  KE+VV ILQ REIKA   R +T + K S 
Sbjct: 354 LDNLLIKEIERDFASAIFAQYFEYLPYRRNRKENVVDILQMREIKAIHNRIQTPKKKPSC 413

Query: 412 PSGMSQYFYTRSLCAAKVGSSAWPCLHTLTVSGNHMGDENRSFRPRQFEYHPSISCLMVF 471
           P G SQYFY+RSL AAKVGSS WP LH L++ GN  G E RSFRPRQFEYHPS S LMVF
Sbjct: 414 PPGRSQYFYSRSLGAAKVGSSPWPLLHPLSILGNDSGGE-RSFRPRQFEYHPSNSSLMVF 472

Query: 472 GTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM 531
           GTLDG++VVVNHE+E IVSYIPS GAMNSVLGLCWLKK+PSKLIAGSDNGSLKLYDI+HM
Sbjct: 473 GTLDGDVVVVNHESEKIVSYIPSLGAMNSVLGLCWLKKHPSKLIAGSDNGSLKLYDIQHM 532

Query: 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADM 591
             ++  ++  AG+ TFDEFDQLTSVHVNS DELFLASGYSKN+ALYDINSGRRLQ+F DM
Sbjct: 533 SSTVADIYCSAGSATFDEFDQLTSVHVNSTDELFLASGYSKNVALYDINSGRRLQMFTDM 592

Query: 592 HKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHY 651
           H+EHINVVKF+NHSP +F TSSFDQDVK+WDLRQKP+QPCYTASSS+GNVM CFSPDDHY
Sbjct: 593 HQEHINVVKFANHSPFLFVTSSFDQDVKMWDLRQKPMQPCYTASSSRGNVMACFSPDDHY 652

Query: 652 LL 653
           LL
Sbjct: 653 LL 654

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480634|ref|XP_002279255.2| PREDICTED: uncharacterized protein LOC100247452 [Vitis vinifera]

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/660 (55%), Positives = 466/660 (70%), Gaps = 30/660 (4%)

Query: 1   MATDIHTLEQRYFDSCRRHDVLPNPAILSGFFKADVRKSQNEPCTLEIILEYLKDIDFQP 60
           MA DI TL+ RY DSC+RH V+PN A+LS F+KA ++KS +E C++ ++L++L+  DF P
Sbjct: 29  MAIDISTLDARYLDSCKRHGVVPNSAVLSWFYKAKIQKSSHEKCSIVVLLDHLRAADFSP 88

Query: 61  LLEVCMQIGATEIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKDFIRNL 120
           L++V ++I ++ I+AVD+   +  +LT E+ LS++  I+ KLR+V+L D SFGKDF R+L
Sbjct: 89  LIDVFLEIDSSNIDAVDILHESPIILTEEYVLSMIRTINLKLRLVELRDVSFGKDFFRDL 148

Query: 121 SQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMC 180
           S  GL C+VL LRSS F+KLNM+G F ++HTLNLDY T LTS ++DCF+CMPNL+ LSMC
Sbjct: 149 SHDGLACQVLKLRSSHFQKLNMVGGFLQLHTLNLDYCTHLTSLQKDCFACMPNLMRLSMC 208

Query: 181 ETRVGNLWTTIAALSKLPSLAELRFQNWLCCDDTGNSSGSSDQDDKTDFSQLNICSSFGA 240
           ETRV NLWTT A LSK+PSL ELRFQ   CC++TG    SS+ DD               
Sbjct: 209 ETRVANLWTTSAVLSKIPSLVELRFQTCPCCENTGPCPMSSNTDDSLTID---------- 258

Query: 241 YGNVVINPDSQILVEDSSDDSEVDFSIQHREYDYLELLS-NLVPQLDGEIDLWNEVSFDA 299
                   D   + E  S+D ++  S + +    LEL S N +P       L  EVSF  
Sbjct: 259 --------DVPSMDECLSNDCQITVSSELQRIGLLELSSDNALPVSKKHGHLQKEVSFSE 310

Query: 300 FSNQNEEESSAGVLARCTAD--VSLKY-ISCHASPICFEKHYRDYMIASLPKLKFLDNLP 356
              Q++  S    L     D  ++LKY IS H SPICFEKHYRDYMIASLP L+ LDNL 
Sbjct: 311 MHVQHKNGSLLSGLNWDLTDAAIALKYCISHHPSPICFEKHYRDYMIASLPLLQVLDNLL 370

Query: 357 IRKVDRERATITYSQYFEHLPYGRKHKESVVSILQQREIKASQTRGKTS---RHKTSYPS 413
           IRK+DRE+A   +S+Y+E+LPY R+  ESVV++LQ+RE+ +S    + S   +  TSY  
Sbjct: 371 IRKMDREKAKTIFSKYYEYLPYKRQ-PESVVTVLQKREMGSSTIHDRKSLKPKQPTSYKK 429

Query: 414 GMSQYFYTRSLCAAKVGSSAWPCLHTLTVSGNHMGDENRSFRPRQFEYHPSISCLMVFGT 473
             S YF++RSLCA K+G  AWP L+ ++        E++  RPRQFEYHPS S LMVFGT
Sbjct: 430 --SPYFFSRSLCATKLG--AWPLLYPVSNISYTSKQESKQLRPRQFEYHPSNSSLMVFGT 485

Query: 474 LDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533
           LDGEIVV NHE+ NIV Y PS GA NSVLGLCWLKK PSKL+AGSDNGSL LYDI HMPP
Sbjct: 486 LDGEIVVFNHESGNIVGYSPSIGAANSVLGLCWLKKCPSKLLAGSDNGSLNLYDINHMPP 545

Query: 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHK 593
           +I   +  +G VT+D F+QLTSVHVNS D+ FL SGYSK++ALYDI SG+RL++F +MH+
Sbjct: 546 NIADAYCSSGIVTYDRFEQLTSVHVNSTDDWFLVSGYSKHVALYDIGSGKRLKLFNNMHR 605

Query: 594 EHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLL 653
           E INV KFSNHSPSIFATSSFD DVKLWDLRQ   +PCYT+SSS+GNVMVCFSPDD YLL
Sbjct: 606 EPINVAKFSNHSPSIFATSSFDHDVKLWDLRQTLERPCYTSSSSRGNVMVCFSPDDLYLL 665

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087358|emb|CBI33732.3| unnamed protein product [Vitis vinifera]

 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/659 (55%), Positives = 454/659 (68%), Gaps = 62/659 (9%)

Query: 1   MATDIHTLEQRYFDSCRRHDVLPNPAILSGFFKADVRKSQNEPCTLEIILEYLKDIDFQP 60
           MA DI TL+ RY DSC+RH V+PN A+LS F+KA ++KS +E C++ ++L++L+  DF P
Sbjct: 1   MAIDISTLDARYLDSCKRHGVVPNSAVLSWFYKAKIQKSSHEKCSIVVLLDHLRAADFSP 60

Query: 61  LLEVCMQIGATEIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKDFIRNL 120
           L++V ++I ++ I+AVD+   +  +LT E+ LS++  I+ KLR+V+L D SFGKDF R+L
Sbjct: 61  LIDVFLEIDSSNIDAVDILHESPIILTEEYVLSMIRTINLKLRLVELRDVSFGKDFFRDL 120

Query: 121 SQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMC 180
           S  GL C+VL LRSS F+KLNM+G F ++HTLNLDY T LTS ++DCF+CMPNL+ LSMC
Sbjct: 121 SHDGLACQVLKLRSSHFQKLNMVGGFLQLHTLNLDYCTHLTSLQKDCFACMPNLMRLSMC 180

Query: 181 ETRVGNLWTTIAALSKLPSLAELRFQNWLCCDDTGNSSGSSDQDDKTDFSQLNICSSFGA 240
           ETRV NLWTT A LSK+PSL ELRFQ   CC++TG                   C   G 
Sbjct: 181 ETRVANLWTTSAVLSKIPSLVELRFQTCPCCENTGP------------------CPIIG- 221

Query: 241 YGNVVINPDSQILVEDSSDDSEVDFSIQHREYDYLELLSNLVPQLDGEIDLWNEVSFDAF 300
                       L+E SSD                    N +P       L  EVSF   
Sbjct: 222 ------------LLELSSD--------------------NALPVSKKHGHLQKEVSFSEM 249

Query: 301 SNQNEEESSAGVLARCTAD--VSLKY-ISCHASPICFEKHYRDYMIASLPKLKFLDNLPI 357
             Q++  S    L     D  ++LKY IS H SPICFEKHYRDYMIASLP L+ LDNL I
Sbjct: 250 HVQHKNGSLLSGLNWDLTDAAIALKYCISHHPSPICFEKHYRDYMIASLPLLQVLDNLLI 309

Query: 358 RKVDRERATITYSQYFEHLPYGRKHKESVVSILQQREIKASQTRGKTS---RHKTSYPSG 414
           RK+DRE+A   +S+Y+E+LPY R+  ESVV++LQ+RE+ +S    + S   +  TSY   
Sbjct: 310 RKMDREKAKTIFSKYYEYLPYKRQ-PESVVTVLQKREMGSSTIHDRKSLKPKQPTSYKK- 367

Query: 415 MSQYFYTRSLCAAKVGSSAWPCLHTLTVSGNHMGDENRSFRPRQFEYHPSISCLMVFGTL 474
            S YF++RSLCA K+G  AWP L+ ++        E++  RPRQFEYHPS S LMVFGTL
Sbjct: 368 -SPYFFSRSLCATKLG--AWPLLYPVSNISYTSKQESKQLRPRQFEYHPSNSSLMVFGTL 424

Query: 475 DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534
           DGEIVV NHE+ NIV Y PS GA NSVLGLCWLKK PSKL+AGSDNGSL LYDI HMPP+
Sbjct: 425 DGEIVVFNHESGNIVGYSPSIGAANSVLGLCWLKKCPSKLLAGSDNGSLNLYDINHMPPN 484

Query: 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKE 594
           I   +  +G VT+D F+QLTSVHVNS D+ FL SGYSK++ALYDI SG+RL++F +MH+E
Sbjct: 485 IADAYCSSGIVTYDRFEQLTSVHVNSTDDWFLVSGYSKHVALYDIGSGKRLKLFNNMHRE 544

Query: 595 HINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLL 653
            INV KFSNHSPSIFATSSFD DVKLWDLRQ   +PCYT+SSS+GNVMVCFSPDD YLL
Sbjct: 545 PINVAKFSNHSPSIFATSSFDHDVKLWDLRQTLERPCYTSSSSRGNVMVCFSPDDLYLL 603

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	721
TAIR|locus:2116179	783	AT4G34280 "AT4G34280" [Arabido	0.875	0.805	0.509	8.7e-184
UNIPROTKB|E2R0N2	427	DDB2 "Uncharacterized protein"	0.325	0.550	0.250	1.4e-06
WB|WBGene00009341	331	thoc-3 [Caenorhabditis elegans	0.138	0.302	0.262	1.4e-05
UNIPROTKB|Q92466	427	DDB2 "DNA damage-binding prote	0.309	0.522	0.242	1.8e-05
TAIR|locus:2176085	299	AT5G64730 "AT5G64730" [Arabido	0.147	0.354	0.268	1.8e-05
DICTYBASE|DDB_G0284101	244	snrpA1 "U2 small nuclear ribon	0.156	0.463	0.264	3.7e-05
UNIPROTKB|O93377	425	rbbp4-a "Histone-binding prote	0.212	0.36	0.273	3.7e-05
UNIPROTKB|Q5M7K4	425	rbbp4 "Histone-binding protein	0.212	0.36	0.273	3.7e-05
UNIPROTKB|Q6INH0	425	rbbp4-b "Histone-binding prote	0.212	0.36	0.273	3.7e-05
UNIPROTKB|B0W517	425	CPIJ001500 "Ribosome biogenesi	0.213	0.362	0.233	3.7e-05

TAIR|locus:2116179 AT4G34280 "AT4G34280" [Arabidopsis thaliana (taxid:3702)]

 Score = 1581 (561.6 bits), Expect = 8.7e-184, Sum P(2) = 8.7e-184
 Identities = 336/659 (50%), Positives = 434/659 (65%)

Query:     3 TDIHTLEQRYFDSCRRHDVLPNPAILSGFFKADVRKSQNEPCTLEIILEYLKDIDFQPLL 62
             T+I TLE++Y + C+ H +LPN AILS FF+A+V+KS+N+ C + + ++ +K  D+ PLL
Sbjct:     5 TEIATLEEKYIELCKMHGILPNTAILSAFFEAEVKKSRNQRCIMNLYVDRVKYDDYLPLL 64

Query:    63 EVCMQIGATEIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKDFIRNLSQ 122
             E+C +I  +E++ +D+   ++C L   +AL L+ +++QKLRVV LHDS FGK+F +++  
Sbjct:    65 ELCNEINTSEVQGIDLFVRSACSLEDHYALPLIRSVNQKLRVVHLHDS-FGKNFWQDVFF 123

Query:   123 RGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCET 182
             +GL C+VLN+RS    KLN++GEF ++HTL LD    +  F EDCFSCMP L  LSMC+T
Sbjct:   124 QGLSCKVLNVRSMHIHKLNIVGEFTQLHTLILD-KNRIVGFGEDCFSCMPKLTYLSMCDT 182

Query:   183 RVGNLWTTIAALSKLPSLAELRFQNWLCCDDTG-----NSSGSSDQDDKTDFSQLNICSS 237
              V +LWT+ AAL KLPSL ELRFQ W+ C D+      +S  SS +DD   F + +    
Sbjct:   183 LVSDLWTSAAALLKLPSLKELRFQIWISCSDSSPLNSESSPSSSTKDDINTFIESDPPVE 242

Query:   238 FGAYGNVVINPDSQILXXXXXXXXXXXXXIQHREYDYLELLSNLVPQLDGEIDLWNEVSF 297
                + +V    D  +              I   E D L+   ++   L+GE+ +  +V  
Sbjct:   243 ADMW-DVAEQMDPSLPVEETLHSMDFSYKIP--EQDDLDSHVSVSAGLNGEVLMREKVRR 299

Query:   298 DAFSNQNEEESSAGVLARCTADVSLKYISCHASPICFEKHYRDYMIASLPKLKFLDNLPI 357
                  Q ++ S      R   +V LKYIS  ASPIC EKHYR YMI SLPKL+ LDNL I
Sbjct:   300 GKMPYQPKDVSPVDTFTRQFGNVGLKYISSKASPICSEKHYRMYMINSLPKLQVLDNLAI 359

Query:   358 RKVDRERATITYSQYFEHLPYGRKHKESVVSILQQREIKASQTRGKTSRHKTSYPSGMSQ 417
             RK DR++A  TYS  FE LPY RK KESVV +L+ RE ++S+              G SQ
Sbjct:   360 RKSDRDKAIETYSANFEDLPYKRK-KESVVRVLENREKRSSK--------------GKSQ 404

Query:   418 YFYTRSLCAAKVGSSAWPCLHTLTVSGNHMG--DENRSFRPRQFEYHPSISCLMVFGTLD 475
               Y RSLCAAK+GS A P LH+L    + +   D+N    PRQFEYHP    LMVFGTLD
Sbjct:   405 NSYKRSLCAAKMGSPASPLLHSLPFLSSRIQQEDDNSRLCPRQFEYHPLDPSLMVFGTLD 464

Query:   476 GXXXXXXXXXXXXXSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535
             G              YIPS G+ +++LGLCWLK YPS +IAGS NGSLKLYDI+    ++
Sbjct:   465 GEVVVLNHESGKIFRYIPSNGSQSTILGLCWLKIYPSMVIAGSANGSLKLYDIQKASSTV 524

Query:   536 R-GMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKE 594
                 H  +G+VTFDEFDQLTSVH NS D+LFLASGYSK++ALYDI  G RLQVFA+MH+E
Sbjct:   525 TTSSHSTSGSVTFDEFDQLTSVHANSTDQLFLASGYSKDVALYDIGRGTRLQVFANMHQE 584

Query:   595 HINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLL 653
             HINVVKFSNHSP +FATSSFD+DVKLWDLRQ+P +PCYTASS+KGNVMVCFSPDD YLL
Sbjct:   585 HINVVKFSNHSPFLFATSSFDKDVKLWDLRQEPSRPCYTASSTKGNVMVCFSPDDRYLL 643

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

UNIPROTKB|E2R0N2 DDB2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 144 (55.7 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 64/255 (25%), Positives = 105/255 (41%)

Query:   422 RSLCAAKVGSSAWPCLHT-LTVSGNHMGDENRSF--------RPRQFEYHPSISCLMVFG 472
             R+L   K+G +AWP L   L  S  H     R F        R     +HP+    +  G
Sbjct:    71 RALHHHKLGKAAWPSLQQGLQQSFLHSLASYRIFQKAAPFDRRATSLAWHPTHPSTLAVG 130

Query:   473 TLDGXXXXXXXXXXXXXSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP 532
             +  G             ++I   GA  S+ GL +     ++    S  G+ +L D +   
Sbjct:   131 SKGGDIMLWNFGMKDKPTFIKGIGAGGSITGLKFNPLDTNQFFTSSMEGTTRLQDFKGN- 189

Query:   533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMH 592
              ++R +   +GT  F       S+ V++   + +      ++ L +++ GR L     MH
Sbjct:   190 -TLR-VFTSSGTCNF----WFCSLDVSARSRMVVTGDNVGHVILLNMD-GRELWNLR-MH 241

Query:   593 KEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM--VCFSPDDH 650
             K+ +  V  +       AT+S DQ VK+WDLRQ   +  +  S    + +   CFSPD  
Sbjct:   242 KKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKSSFLHSLPHSHPVNAACFSPDGA 301

Query:   651 YLLGKGSGTSMFVQS 665
              LL     + + V S
Sbjct:   302 QLLTTDQKSELRVYS 316

GO:0051865 "protein autoubiquitination" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0009411 "response to UV" evidence=IEA

GO:0006290 "pyrimidine dimer repair" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

WB|WBGene00009341 thoc-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 133 (51.9 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 27/103 (26%), Positives = 52/103 (50%)

Query:   552 QLTSVHVNSMDELFLASGYSKNIALYDINSGR-RLQVFADMHKEHINVVKFSNHSPSIFA 610
             Q  S+  N      +   + K +++ +++ GR R       H   +  V  S   P++FA
Sbjct:    38 QCQSIAFNCDGTKLVCGAFDKKVSVANVDGGRLRFSWVGSSHSSSVEQVACSEKQPNLFA 97

Query:   611 TSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLL 653
             ++S D+++ +WD+RQ   +P +  S+  GN  + +SP D Y +
Sbjct:    98 SASADRNICVWDIRQS--KPTHRISNRVGNFFISWSPCDEYFI 138

GO:0000347 "THO complex" evidence=ISS

UNIPROTKB|Q92466 DDB2 "DNA damage-binding protein 2" [Homo sapiens (taxid:9606)]

 Score = 134 (52.2 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 59/243 (24%), Positives = 100/243 (41%)

Query:   422 RSLCAAKVGSSAWPCLHT-LTVSGNHMGDENRSF--------RPRQFEYHPSISCLMVFG 472
             R+L   K+G ++WP +   L  S  H  D  R          R     +HP+    +  G
Sbjct:    71 RTLHQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVG 130

Query:   473 TLDGXXXXXXXXXXXXXSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP 532
             +  G             ++I   GA  S+ GL +     ++  A S  G+ +L D +   
Sbjct:   131 SKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG-- 188

Query:   533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMH 592
              +I  +   + T+         S+ V++   + +      N+ L +++ G+ L     MH
Sbjct:   189 -NILRVFASSDTINI----WFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLR-MH 241

Query:   593 KEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM--VCFSPDDH 650
             K+ +  V  +       AT+S DQ VK+WDLRQ   +  +  S    + +   CFSPD  
Sbjct:   242 KKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA 301

Query:   651 YLL 653
              LL
Sbjct:   302 RLL 304

GO:0006290 "pyrimidine dimer repair" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0009411 "response to UV" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000209 "protein polyubiquitination" evidence=IDA

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0003677 "DNA binding" evidence=TAS

GO:0003684 "damaged DNA binding" evidence=TAS

GO:0000718 "nucleotide-excision repair, DNA damage removal" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006281 "DNA repair" evidence=TAS

GO:0006289 "nucleotide-excision repair" evidence=TAS

TAIR|locus:2176085 AT5G64730 "AT5G64730" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 29/108 (26%), Positives = 53/108 (49%)

Query:   552 QLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFAT 611
             ++  VHV S +  F + G  + +  +D+++GR ++ F   H   +N VKF N S S+  +
Sbjct:    62 EVRDVHVTSDNAKFCSCGGDRQVYYWDVSTGRVIRKFRG-HDGEVNAVKF-NDSSSVVVS 119

Query:   612 SSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGT 659
             + FD+ +++WD R   ++P     +    VM         + G   GT
Sbjct:   120 AGFDRSLRVWDCRSHSVEPVQIIDTFLDTVMSVVLTKTEIIGGSVDGT 167

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

DICTYBASE|DDB_G0284101 snrpA1 "U2 small nuclear ribonucleoprotein A'" [Dictyostelium discoideum (taxid:44689)]

 Score = 86 (35.3 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
 Identities = 32/121 (26%), Positives = 55/121 (45%)

Query:    86 LTGEFALSLMHAIDQ-KLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIG 144
             LT E  L     I+  K R ++L  +      I NL       + ++   +   K+    
Sbjct:     3 LTAELILKSPDYINPCKDRELNLRGNKISS--IENLGATKNQFDTIDFSDNEISKVENFP 60

Query:   145 EFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELR 204
             + +R+ TL L  +  + SF+ED  S +P+L  L +   R+ NL    + L  L  L+E++
Sbjct:    61 KLERVKTL-LFNNNHIKSFEEDFGSSLPHLRALILSNNRINNL----SDLEPLTKLSEIK 115

Query:   205 F 205
             F
Sbjct:   116 F 116

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|O93377 rbbp4-a "Histone-binding protein RBBP4-A" [Xenopus laevis (taxid:8355)]

 Score = 131 (51.2 bits), Expect = 3.7e-05, P = 3.7e-05
 Identities = 44/161 (27%), Positives = 74/161 (45%)

Query:   503 GLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD 562
             GL W       L++ SD+ ++ L+DI  +P    G    A T+       +  V  + + 
Sbjct:   182 GLSWNPNLSGNLLSASDDHTICLWDISAVPKE--GKVVDAKTIFTGHTAVVEDVSWHLLH 239

Query:   563 E-LFLASGYSKNIALYDINSGRRLQVF--ADMHKEHINVVKFSNHSPSIFATSSFDQDVK 619
             E LF +    + + ++D  S    +     D H   +N + F+ +S  I AT S D+ V 
Sbjct:   240 ESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVA 299

Query:   620 LWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGT 659
             LWDLR   ++  ++  S K  +  V +SP +  +L   SGT
Sbjct:   300 LWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILAS-SGT 338

GO:0031497 "chromatin assembly" evidence=ISS

GO:0033186 "CAF-1 complex" evidence=ISS

GO:0035098 "ESC/E(Z) complex" evidence=ISS

UNIPROTKB|Q5M7K4 rbbp4 "Histone-binding protein RBBP4" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 131 (51.2 bits), Expect = 3.7e-05, P = 3.7e-05
 Identities = 44/161 (27%), Positives = 74/161 (45%)

Query:   503 GLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD 562
             GL W       L++ SD+ ++ L+DI  +P    G    A T+       +  V  + + 
Sbjct:   182 GLSWNPNLSGNLLSASDDHTICLWDISAVPKE--GKVVDAKTIFTGHTAVVEDVSWHLLH 239

Query:   563 E-LFLASGYSKNIALYDINSGRRLQVF--ADMHKEHINVVKFSNHSPSIFATSSFDQDVK 619
             E LF +    + + ++D  S    +     D H   +N + F+ +S  I AT S D+ V 
Sbjct:   240 ESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVA 299

Query:   620 LWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGT 659
             LWDLR   ++  ++  S K  +  V +SP +  +L   SGT
Sbjct:   300 LWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILAS-SGT 338

GO:0031497 "chromatin assembly" evidence=ISS

GO:0033186 "CAF-1 complex" evidence=ISS

GO:0035098 "ESC/E(Z) complex" evidence=ISS

UNIPROTKB|Q6INH0 rbbp4-b "Histone-binding protein RBBP4-B" [Xenopus laevis (taxid:8355)]

 Score = 131 (51.2 bits), Expect = 3.7e-05, P = 3.7e-05
 Identities = 44/161 (27%), Positives = 74/161 (45%)

Query:   503 GLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD 562
             GL W       L++ SD+ ++ L+DI  +P    G    A T+       +  V  + + 
Sbjct:   182 GLSWNPNLSGNLLSASDDHTICLWDISAVPKE--GKVVDAKTIFTGHTAVVEDVSWHLLH 239

Query:   563 E-LFLASGYSKNIALYDINSGRRLQVF--ADMHKEHINVVKFSNHSPSIFATSSFDQDVK 619
             E LF +    + + ++D  S    +     D H   +N + F+ +S  I AT S D+ V 
Sbjct:   240 ESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVA 299

Query:   620 LWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGT 659
             LWDLR   ++  ++  S K  +  V +SP +  +L   SGT
Sbjct:   300 LWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILAS-SGT 338

GO:0005634 "nucleus" evidence=ISS

GO:0006338 "chromatin remodeling" evidence=ISS

GO:0031497 "chromatin assembly" evidence=ISS

GO:0033186 "CAF-1 complex" evidence=ISS

GO:0035098 "ESC/E(Z) complex" evidence=ISS

GO:0008094 "DNA-dependent ATPase activity" evidence=ISS

UNIPROTKB|B0W517 CPIJ001500 "Ribosome biogenesis protein WDR12 homolog" [Culex quinquefasciatus (taxid:7176)]

 Score = 123 (48.4 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
 Identities = 40/171 (23%), Positives = 81/171 (47%)

Query:   496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYG-AGTVTFDEFDQLT 554
             G    + G+ W+    + L+  S + ++K++D+     ++ G+    +G  +F  FD   
Sbjct:   258 GHRECISGVQWIDD--NTLVTSSWDHTIKIWDL-----ALNGIKSEISGNKSF--FD--- 305

Query:   555 SVHVNSMDELFLASGYSKNIALYD--INSGRRLQVFADMHKEHINVVKFSNHSPSIFATS 612
              +  + ++ L + +   KN+ LYD   N G  ++     H + +  V++S  +  +F + 
Sbjct:   306 -LSYSKLNGLIITASPDKNLRLYDPKSNQGTLVKNTYLGHTQWVQSVRWSTTNEYLFVSG 364

Query:   613 SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFV 663
             ++D  VKLWD R  P  P +     +  V+ C   +  ++L  GS  S+ V
Sbjct:   365 AYDNHVKLWDYRS-PKAPIFELIGHEDKVLACDWSNPRFILSGGSDNSVRV 414

GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

GO:0070545 "PeBoW complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.IX.2461.1 hypothetical protein (783 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	721
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-12
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-12
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-10
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-05

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 67.4 bits (165), Expect = 4e-12
 Identities = 50/197 (25%), Positives = 82/197 (41%), Gaps = 24/197 (12%)

Query: 468 LMVFGTLDGEIVVVN-HENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLY 526
           L+  G+ DG I V +    E + +     G +  V            L +GS + +++L+
Sbjct: 23  LLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTY----LASGSSDKTIRLW 78

Query: 527 DIRHMPPSIR--GMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRR 584
           D+      +R    H             ++SV  +    +  +S   K I ++D+ +G+ 
Sbjct: 79  DLE-TGECVRTLTGH----------TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC 127

Query: 585 LQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM-V 643
           L      H + +N V FS    +  A+SS D  +KLWDLR    +   T +   G V  V
Sbjct: 128 LTTLRG-HTDWVNSVAFS-PDGTFVASSSQDGTIKLWDLRT--GKCVATLTGHTGEVNSV 183

Query: 644 CFSPD-DHYLLGKGSGT 659
            FSPD +  L     GT
Sbjct: 184 AFSPDGEKLLSSSSDGT 200

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 67.0 bits (164), Expect = 4e-12
 Identities = 34/161 (21%), Positives = 63/161 (39%), Gaps = 17/161 (10%)

Query: 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGM-HYGAGTVTFDEFDQLT 554
           G    V  + +       L  GS +G++K++D+           H G           + 
Sbjct: 7   GHTGGVTCVAFSPD-GKLLATGSGDGTIKVWDLETGELLRTLKGHTGP----------VR 55

Query: 555 SVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614
            V  ++      +    K I L+D+ +G  ++     H  +++ V FS     I ++SS 
Sbjct: 56  DVAASADGTYLASGSSDKTIRLWDLETGECVRTLT-GHTSYVSSVAFSPDGR-ILSSSSR 113

Query: 615 DQDVKLWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLG 654
           D+ +K+WD+     +   T       V  V FSPD  ++  
Sbjct: 114 DKTIKVWDVETG--KCLTTLRGHTDWVNSVAFSPDGTFVAS 152

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 62.0 bits (149), Expect = 6e-10
 Identities = 46/205 (22%), Positives = 76/205 (37%), Gaps = 19/205 (9%)

Query: 457 RQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIA 516
               + P    L    +LDG I + +      +S +   G  + V  L +       + +
Sbjct: 159 TSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA--GHTDPVSSLAFSPDGGLLIAS 216

Query: 517 GSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNS---MDELFLASGYSKN 573
           GS +G+++L+D+              G +        +   V+S      L  +      
Sbjct: 217 GSSDGTIRLWDLS------------TGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGT 264

Query: 574 IALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYT 633
           I L+D+ S   L      H   +  V FS     + A+ S D  V+LWDL    +    T
Sbjct: 265 IRLWDLRSSSSLLRTLSGHSSSVLSVAFS-PDGKLLASGSSDGTVRLWDLETGKLLSSLT 323

Query: 634 ASSSKGNVM-VCFSPDDHYLLGKGS 657
               +G V  + FSPD   L+  GS
Sbjct: 324 LKGHEGPVSSLSFSPDGSLLVSGGS 348

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 57.7 bits (140), Expect = 5e-09
 Identities = 41/192 (21%), Positives = 73/192 (38%), Gaps = 17/192 (8%)

Query: 464 SISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSL 523
           +    +  G+ D  I + + E    V  +   G  + V  + +       L + S + ++
Sbjct: 61  ADGTYLASGSSDKTIRLWDLETGECVRTL--TGHTSYVSSVAFSPD-GRILSSSSRDKTI 117

Query: 524 KLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR 583
           K++D+               T      D + SV  +       +S     I L+D+ +G+
Sbjct: 118 KVWDVET---------GKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK 168

Query: 584 RLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM- 642
            +      H   +N V FS     + ++SS D  +KLWDL     +   T    +  V  
Sbjct: 169 CVATLTG-HTGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLSTG--KCLGTLRGHENGVNS 224

Query: 643 VCFSPDDHYLLG 654
           V FSPD + L  
Sbjct: 225 VAFSPDGYLLAS 236

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 26/124 (20%), Positives = 53/124 (42%), Gaps = 12/124 (9%)

Query: 499 NSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHV 558
             V  + +      KL++ S +G++KL+D+        G   G  T+   E + + SV  
Sbjct: 178 GEVNSVAFSPD-GEKLLSSSSDGTIKLWDLS------TGKCLG--TLRGHE-NGVNSVAF 227

Query: 559 NSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDV 618
           +    L  +      I ++D+ +G  +Q  +  H   +  + +S       A+ S D  +
Sbjct: 228 SPDGYLLASGSEDGTIRVWDLRTGECVQTLS-GHTNSVTSLAWSPDGK-RLASGSADGTI 285

Query: 619 KLWD 622
           ++WD
Sbjct: 286 RIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 53.6 bits (127), Expect = 3e-07
 Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 11/149 (7%)

Query: 512 SKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS 571
             L++GS +G++KL+D+ +    I+       ++       ++ + ++S D   +    S
Sbjct: 78  ELLLSGSSDGTIKLWDLDNGEKLIK-------SLEGLHDSSVSKLALSSPDGNSILLASS 130

Query: 572 ---KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPI 628
                + L+D+++  +L    + H E +  + FS     + + SS D  +KLWDLR    
Sbjct: 131 SLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP 190

Query: 629 QPCYTASSSKGNVMVCFSPDDHYLLGKGS 657
                A  +     + FSPD   L+  GS
Sbjct: 191 L-STLAGHTDPVSSLAFSPDGGLLIASGS 218

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 53.2 bits (126), Expect = 3e-07
 Identities = 40/228 (17%), Positives = 84/228 (36%), Gaps = 19/228 (8%)

Query: 459 FEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS 518
             + P    L+  G+ DG I + +     ++    +    +  +   +     S L +GS
Sbjct: 204 LAFSPDGGLLIASGSSDGTIRLWDLSTGKLLR--STLSGHSDSVVSSFSP-DGSLLASGS 260

Query: 519 DNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYD 578
            +G+++L+D+R     +R                + SV  +   +L  +      + L+D
Sbjct: 261 SDGTIRLWDLRSSSSLLR--------TLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWD 312

Query: 579 INSGRRLQVFA-DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKP-------IQP 630
           + +G+ L       H+  ++ + FS     + +  S D  ++LWDLR             
Sbjct: 313 LETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN 372

Query: 631 CYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDFNMSI 678
             + S S    +V     D  +      T   +++L G   R  ++  
Sbjct: 373 VLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDF 420

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 51.6 bits (124), Expect = 5e-07
 Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 19/160 (11%)

Query: 496 GAMNSVLGLCWLKKYPSKLIA-GSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEF-DQL 553
           G  + V  + +        +A  S +G++KL+D+R    + + +       T      ++
Sbjct: 133 GHTDWVNSVAFSP--DGTFVASSSQDGTIKLWDLR----TGKCVA------TLTGHTGEV 180

Query: 554 TSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613
            SV  +   E  L+S     I L+D+++G+ L      H+  +N V FS     + A+ S
Sbjct: 181 NSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG-HENGVNSVAFSPDG-YLLASGS 238

Query: 614 FDQDVKLWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYL 652
            D  +++WDLR    +   T S    +V  + +SPD   L
Sbjct: 239 EDGTIRVWDLRTG--ECVQTLSGHTNSVTSLAWSPDGKRL 276

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 54/332 (16%), Positives = 113/332 (34%), Gaps = 15/332 (4%)

Query: 345 SLPKLKFLDNLPIRKVDRERATITYSQYFEHLPYGRKHKESVVSILQQREIKASQTRGKT 404
            +           + + +     + +          +    ++++L    +         
Sbjct: 1   LVDNSSTSSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLL 60

Query: 405 SRHKTSYPSGMSQYFYTRSLCAAKVGSSA--WPCLHTLTVSGNHMGDENRSFRPRQFEYH 462
            R      + ++       L +     +   W   +   +  +  G  + S         
Sbjct: 61  LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP 120

Query: 463 PSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGS 522
              S L+   +LDG + + +      +      G   SV  L +           S +G+
Sbjct: 121 DGNSILLASSSLDGTVKLWDLSTPGKLIRT-LEGHSESVTSLAFSPDGKLLASGSSLDGT 179

Query: 523 LKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLAS-GYSKNIALYDINS 581
           +KL+D+R    + + +   AG       D ++S+  +    L +AS      I L+D+++
Sbjct: 180 IKLWDLR----TGKPLSTLAGHT-----DPVSSLAFSPDGGLLIASGSSDGTIRLWDLST 230

Query: 582 GRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV 641
           G+ L+     H +  +VV   +   S+ A+ S D  ++LWDLR         +  S   +
Sbjct: 231 GKLLRSTLSGHSD--SVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVL 288

Query: 642 MVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRD 673
            V FSPD   L    S  ++ +  L       
Sbjct: 289 SVAFSPDGKLLASGSSDGTVRLWDLETGKLLS 320

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	721
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.97
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.97
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.97
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.97
KOG0286	343	consensus G-protein beta subunit [General function	99.96
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.96
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.95
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.95
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.95
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.95
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.95
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.94
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.94
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.94
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.94
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.94
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.93
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.93
KOG0266	456	consensus WD40 repeat-containing protein [General	99.93
KOG0645	312	consensus WD40 repeat protein [General function pr	99.93
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.93
KOG0266	456	consensus WD40 repeat-containing protein [General	99.93
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.92
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.92
PLN00181	793	protein SPA1-RELATED; Provisional	99.92
PTZ00421	493	coronin; Provisional	99.92
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.92
PTZ00420	568	coronin; Provisional	99.92
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.92
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.92
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.92
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.91
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.91
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.91
PLN00181	793	protein SPA1-RELATED; Provisional	99.91
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.9
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.9
KOG0286	343	consensus G-protein beta subunit [General function	99.9
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.9
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.9
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.9
KOG0645	312	consensus WD40 repeat protein [General function pr	99.9
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.9
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.9
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.89
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.89
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.89
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.89
PTZ00421	493	coronin; Provisional	99.89
PTZ00420	568	coronin; Provisional	99.89
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.88
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.88
KOG0296	399	consensus Angio-associated migratory cell protein	99.88
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.88
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.88
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.88
KOG0289	506	consensus mRNA splicing factor [General function p	99.87
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.87
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.87
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.87
KOG1539	910	consensus WD repeat protein [General function pred	99.87
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.87
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.87
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.87
KOG0289	506	consensus mRNA splicing factor [General function p	99.87
KOG0643	327	consensus Translation initiation factor 3, subunit	99.86
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.86
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.86
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.86
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.86
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.85
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.85
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.85
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.85
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.84
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.84
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.84
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.84
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.84
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.84
KOG4328	498	consensus WD40 protein [Function unknown]	99.83
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.83
KOG0641	350	consensus WD40 repeat protein [General function pr	99.83
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.83
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.83
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.82
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.82
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.82
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.82
KOG0646	476	consensus WD40 repeat protein [General function pr	99.81
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.81
KOG0643	327	consensus Translation initiation factor 3, subunit	99.81
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.81
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.81
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.81
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.8
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.8
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.79
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.79
KOG0296	399	consensus Angio-associated migratory cell protein	99.78
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.78
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.78
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.77
KOG2055	514	consensus WD40 repeat protein [General function pr	99.77
KOG0267	825	consensus Microtubule severing protein katanin p80	99.77
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.77
KOG0639	705	consensus Transducin-like enhancer of split protei	99.77
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.77
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.77
KOG1273	405	consensus WD40 repeat protein [General function pr	99.77
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.76
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.76
KOG0641	350	consensus WD40 repeat protein [General function pr	99.76
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.76
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.75
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.75
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.75
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.75
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.74
KOG0267	825	consensus Microtubule severing protein katanin p80	99.74
KOG1274	933	consensus WD40 repeat protein [General function pr	99.74
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.73
KOG2096	420	consensus WD40 repeat protein [General function pr	99.73
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.73
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.73
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.73
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.72
KOG0639	705	consensus Transducin-like enhancer of split protei	99.72
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.72
KOG1274	933	consensus WD40 repeat protein [General function pr	99.71
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.71
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.71
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.71
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.71
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.71
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.71
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.7
KOG2048	691	consensus WD40 repeat protein [General function pr	99.69
KOG1539	910	consensus WD repeat protein [General function pred	99.69
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.68
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.68
KOG4227	609	consensus WD40 repeat protein [General function pr	99.67
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.67
KOG2055	514	consensus WD40 repeat protein [General function pr	99.66
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.66
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.66
KOG0649	325	consensus WD40 repeat protein [General function pr	99.65
KOG1188	376	consensus WD40 repeat protein [General function pr	99.65
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.64
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.64
KOG4328	498	consensus WD40 protein [Function unknown]	99.64
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.63
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.63
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.62
KOG2048	691	consensus WD40 repeat protein [General function pr	99.62
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.62
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.6
KOG0646	476	consensus WD40 repeat protein [General function pr	99.6
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.59
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.58
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.58
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.58
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.56
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.56
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	99.56
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.56
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.55
COG2319	466	FOG: WD40 repeat [General function prediction only	99.55
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.55
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.54
KOG2096	420	consensus WD40 repeat protein [General function pr	99.54
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.53
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.52
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.51
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.51
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.5
KOG2139	445	consensus WD40 repeat protein [General function pr	99.48
COG2319	466	FOG: WD40 repeat [General function prediction only	99.48
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.47
KOG1310	758	consensus WD40 repeat protein [General function pr	99.45
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.45
KOG1273	405	consensus WD40 repeat protein [General function pr	99.45
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.44
PRK11028	330	6-phosphogluconolactonase; Provisional	99.43
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.43
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.42
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.41
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.41
PRK01742	429	tolB translocation protein TolB; Provisional	99.39
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.39
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.39
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.39
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.38
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.38
KOG4227	609	consensus WD40 repeat protein [General function pr	99.35
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.35
PRK11028	330	6-phosphogluconolactonase; Provisional	99.35
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.34
PRK03629	429	tolB translocation protein TolB; Provisional	99.32
PRK01742	429	tolB translocation protein TolB; Provisional	99.31
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.29
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.29
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.28
KOG1334	559	consensus WD40 repeat protein [General function pr	99.28
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.27
KOG0649	325	consensus WD40 repeat protein [General function pr	99.26
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.26
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.25
KOG1310	758	consensus WD40 repeat protein [General function pr	99.25
PRK04922	433	tolB translocation protein TolB; Provisional	99.24
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.23
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.23
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.23
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.22
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.21
KOG1188	376	consensus WD40 repeat protein [General function pr	99.21
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.21
PRK05137	435	tolB translocation protein TolB; Provisional	99.21
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.19
KOG2139	445	consensus WD40 repeat protein [General function pr	99.18
PRK02889	427	tolB translocation protein TolB; Provisional	99.17
PRK05137	435	tolB translocation protein TolB; Provisional	99.16
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.15
PRK02889	427	tolB translocation protein TolB; Provisional	99.13
KOG1963	792	consensus WD40 repeat protein [General function pr	99.12
PRK04922	433	tolB translocation protein TolB; Provisional	99.12
KOG1963	792	consensus WD40 repeat protein [General function pr	99.12
PRK03629	429	tolB translocation protein TolB; Provisional	99.1
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.09
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.08
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.07
KOG4547	541	consensus WD40 repeat-containing protein [General	99.05
KOG2315	566	consensus Predicted translation initiation factor	99.05
PRK00178	430	tolB translocation protein TolB; Provisional	99.0
PRK04792	448	tolB translocation protein TolB; Provisional	99.0
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.99
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	98.98
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.98
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	98.95
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.94
KOG2321	703	consensus WD40 repeat protein [General function pr	98.94
KOG2321	703	consensus WD40 repeat protein [General function pr	98.93
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	98.92
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.91
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.87
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	98.86
PRK01029	428	tolB translocation protein TolB; Provisional	98.84
PRK00178	430	tolB translocation protein TolB; Provisional	98.84
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.83
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	98.82
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.79
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.79
PRK04792	448	tolB translocation protein TolB; Provisional	98.75
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.74
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.74
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.73
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.72
KOG4547	541	consensus WD40 repeat-containing protein [General	98.72
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.71
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.67
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.66
COG4946	668	Uncharacterized protein related to the periplasmic	98.61
KOG1334	559	consensus WD40 repeat protein [General function pr	98.6
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.56
PRK01029	428	tolB translocation protein TolB; Provisional	98.55
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.54
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.51
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.43
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.42
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.4
KOG2695	425	consensus WD40 repeat protein [General function pr	98.39
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.39
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.36
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.36
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.35
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.35
PRK04043	419	tolB translocation protein TolB; Provisional	98.33
PRK04043	419	tolB translocation protein TolB; Provisional	98.33
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.31
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.28
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.28
KOG2314	698	consensus Translation initiation factor 3, subunit	98.27
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.27
KOG2695	425	consensus WD40 repeat protein [General function pr	98.23
KOG2315	566	consensus Predicted translation initiation factor	98.22
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.2
COG4946	668	Uncharacterized protein related to the periplasmic	98.19
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.18
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.13
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.11
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.1
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.09
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.08
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.08
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.07
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.06
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.05
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.02
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	97.99
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	97.97
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.96
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.94
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.92
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.91
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.9
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.89
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.84
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.83
KOG2314	698	consensus Translation initiation factor 3, subunit	97.82
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.8
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.79
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.75
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.73
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.71
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.66
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.64
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.64
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.63
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.61
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.47
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.38
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.38
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.37
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.37
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.27
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.19
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.1
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.08
KOG3621	726	consensus WD40 repeat-containing protein [General	96.98
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	96.98
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	96.96
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.95
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.95
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.95
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.94
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.91
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.89
PRK02888	635	nitrous-oxide reductase; Validated	96.87
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	96.85
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	96.81
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.8
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.8
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.79
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.78
COG3391	381	Uncharacterized conserved protein [Function unknow	96.77
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	96.74
PRK02888	635	nitrous-oxide reductase; Validated	96.74
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.73
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.73
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	96.71
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.68
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.67
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.65
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.64
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.6
COG3391	381	Uncharacterized conserved protein [Function unknow	96.56
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.56
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.53
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	96.45
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.45
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.41
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.41
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.37
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.31
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.3
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	96.28
KOG3621	726	consensus WD40 repeat-containing protein [General	96.17
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.12
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.11
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.99
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	95.99
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	95.81
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	95.7
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.69
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	95.64
KOG2395	644	consensus Protein involved in vacuole import and d	95.58
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	95.55
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.52
PHA02713	557	hypothetical protein; Provisional	95.42
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.33
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.28
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	95.28
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	95.22
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	94.91
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	94.83
PHA03098	534	kelch-like protein; Provisional	94.73
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	94.65
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	94.58
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	94.42
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.34
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	94.32
KOG2395	644	consensus Protein involved in vacuole import and d	94.21
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	94.04
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	93.96
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	93.9
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	93.64
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	93.56
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	93.43
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	93.42
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	93.38
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	93.34
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	93.08
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	92.99
PRK13616	591	lipoprotein LpqB; Provisional	92.71
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	92.68
KOG2444	238	consensus WD40 repeat protein [General function pr	92.53
PHA02790	480	Kelch-like protein; Provisional	92.52
PF14727	418	PHTB1_N: PTHB1 N-terminus	92.37
KOG2444	238	consensus WD40 repeat protein [General function pr	92.36
PLN03150	623	hypothetical protein; Provisional	92.32
PLN03210	1153	Resistant to P. syringae 6; Provisional	92.2
PRK13616	591	lipoprotein LpqB; Provisional	92.05
PLN03210	1153	Resistant to P. syringae 6; Provisional	92.02
PHA02713	557	hypothetical protein; Provisional	92.02
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	91.94
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	91.7
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	91.57
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	91.14
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	91.04
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	90.62
smart00446	26	LRRcap occurring C-terminal to leucine-rich repeat	90.5
KOG2982	418	consensus Uncharacterized conserved protein [Funct	90.48
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	90.11
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	90.1
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	90.09
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	89.82
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	89.78
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	89.27
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	89.26
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	89.02
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	88.95
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	88.82
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	88.71
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	88.56
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	88.55
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	88.53
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	88.05
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	87.82
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	87.72
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	87.7
PF14727	418	PHTB1_N: PTHB1 N-terminus	87.63
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	87.59
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	87.12
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	87.1
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	87.09
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	87.08
PLN03150	623	hypothetical protein; Provisional	86.87
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	85.95
PHA03098	534	kelch-like protein; Provisional	85.53
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	84.86
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	84.57
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	84.53
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	84.47
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	84.45
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	84.12
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	84.03
KOG4237	498	consensus Extracellular matrix protein slit, conta	83.6
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	83.55
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	83.49
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	83.33
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	83.16
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	83.1
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	82.76
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	82.52
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	82.18
COG5167	776	VID27 Protein involved in vacuole import and degra	81.71
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	81.63
PRK10115	686	protease 2; Provisional	81.12
PHA02790	480	Kelch-like protein; Provisional	81.03
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	80.54
KOG2982	418	consensus Uncharacterized conserved protein [Funct	80.54
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	80.37
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	80.2
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	80.12

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=8.1e-31  Score=270.89  Aligned_cols=228  Identities=20%  Similarity=0.316  Sum_probs=197.4

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|.|++|+| ++..||+|+.|.++|+||+.+..+..+.+  +|...|.+++|+ |++..|++|+.||+|++||.+++++.
T Consensus       117 ~Vl~~~fsp-~g~~l~tGsGD~TvR~WD~~TeTp~~t~K--gH~~WVlcvaws-PDgk~iASG~~dg~I~lwdpktg~~~  192 (480)
T KOG0271|consen  117 AVLSVQFSP-TGSRLVTGSGDTTVRLWDLDTETPLFTCK--GHKNWVLCVAWS-PDGKKIASGSKDGSIRLWDPKTGQQI  192 (480)
T ss_pred             cEEEEEecC-CCceEEecCCCceEEeeccCCCCcceeec--CCccEEEEEEEC-CCcchhhccccCCeEEEecCCCCCcc
Confidence            689999999 99999999999999999999999999988  999999999998 79999999999999999999998876


Q ss_pred             ccccccCcceeEeccCCCeEEEEEec-----CCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEE
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNS-----MDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIF  609 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp-----~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lL  609 (721)
                      ...+.+        |...|++++|.|     ....+++++.||.|+|||+..++++..+.+ |..+|+|+.|.-+|  ++
T Consensus       193 g~~l~g--------H~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsg-HT~~VTCvrwGG~g--li  261 (480)
T KOG0271|consen  193 GRALRG--------HKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSG-HTASVTCVRWGGEG--LI  261 (480)
T ss_pred             cccccC--------cccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEecc-CccceEEEEEcCCc--eE
Confidence            555544        445689999876     457899999999999999999999999997 99999999998766  99


Q ss_pred             EEEECCCcEEEEECCCCCc-------------------------------------------------------------
Q 004969          610 ATSSFDQDVKLWDLRQKPI-------------------------------------------------------------  628 (721)
Q Consensus       610 aSgs~DgtIrIWDlrs~~~-------------------------------------------------------------  628 (721)
                      ++||.|++|++|+...+.+                                                             
T Consensus       262 ySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVS  341 (480)
T KOG0271|consen  262 YSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVS  341 (480)
T ss_pred             EecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEE
Confidence            9999999999999765321                                                             


Q ss_pred             ----------------eeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC-CC---cccccccCeEEEEECCCC
Q 004969          629 ----------------QPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR-GD---PFRDFNMSILAAYTRPSS  687 (721)
Q Consensus       629 ----------------~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~-g~---~l~~~~~~V~~v~fsP~~  687 (721)
                                      +++....+|...+ .+.||||++|+++++-|.+|++|+-+ |+   .+++|-..|..++|+.++
T Consensus       342 gsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDs  421 (480)
T KOG0271|consen  342 GSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADS  421 (480)
T ss_pred             ecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCc
Confidence                            0111223455555 79999999999999999999999988 44   367788899999999999


Q ss_pred             CcccccccEEEEecCCC
Q 004969          688 KSEIVKVNLLASTDHCD  704 (721)
Q Consensus       688 ~~~~v~v~lLASgs~~~  704 (721)
                             .+|+|||...
T Consensus       422 -------RLlVS~SkDs  431 (480)
T KOG0271|consen  422 -------RLLVSGSKDS  431 (480)
T ss_pred             -------cEEEEcCCCc
Confidence                   9999999864

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=2.8e-31  Score=277.72  Aligned_cols=228  Identities=17%  Similarity=0.239  Sum_probs=201.4

Q ss_pred             cCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeC-CCCEEEEEeCCCeEEEEEcCCCC
Q 004969          454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKK-YPSKLIAGSDNGSLKLYDIRHMP  532 (721)
Q Consensus       454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~-d~~~LaSgs~DGtVrIWDi~~~~  532 (721)
                      ..+..+.|++ +++.||||+.+|.++||+..+...+.++.  ||...|.++.|+|. ++..++||+.||++++|++++..
T Consensus       176 rPis~~~fS~-ds~~laT~swsG~~kvW~~~~~~~~~~l~--gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~  252 (459)
T KOG0272|consen  176 RPISGCSFSR-DSKHLATGSWSGLVKVWSVPQCNLLQTLR--GHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET  252 (459)
T ss_pred             CcceeeEeec-CCCeEEEeecCCceeEeecCCcceeEEEe--ccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence            3588899999 99999999999999999999998888888  99999999999987 47799999999999999999854


Q ss_pred             CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969          533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS  612 (721)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg  612 (721)
                      + +..+.+        |...|..++|||+|.++++++.|.+.++||+++++.+....| |...|.+++|+||| .+++||
T Consensus       253 ~-l~~l~g--------H~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEG-Hs~~v~~iaf~~DG-SL~~tG  321 (459)
T KOG0272|consen  253 P-LQDLEG--------HLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEG-HSKGVFSIAFQPDG-SLAATG  321 (459)
T ss_pred             c-hhhhhc--------chhhheeeeecCCCceeeecccccchhhcccccchhhHhhcc-cccccceeEecCCC-ceeecc
Confidence            3 333333        335679999999999999999999999999999998887777 99999999999999 899999


Q ss_pred             ECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCc----ccccccCeEEEEECCCC
Q 004969          613 SFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDP----FRDFNMSILAAYTRPSS  687 (721)
Q Consensus       613 s~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~----l~~~~~~V~~v~fsP~~  687 (721)
                      +.|..-||||+|++.+  +..+.+|...+ +++|+|+|..|+||+.|++++|||+++..    +..|..-|..|.|+|..
T Consensus       322 GlD~~~RvWDlRtgr~--im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~  399 (459)
T KOG0272|consen  322 GLDSLGRVWDLRTGRC--IMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQE  399 (459)
T ss_pred             CccchhheeecccCcE--EEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccC
Confidence            9999999999999966  66678898888 99999999999999999999999999543    45667789999999943


Q ss_pred             CcccccccEEEEecCC
Q 004969          688 KSEIVKVNLLASTDHC  703 (721)
Q Consensus       688 ~~~~v~v~lLASgs~~  703 (721)
                      .      .+|+|||-.
T Consensus       400 g------~fL~TasyD  409 (459)
T KOG0272|consen  400 G------YFLVTASYD  409 (459)
T ss_pred             C------eEEEEcccC
Confidence            2      889988875

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=5.5e-31  Score=275.48  Aligned_cols=226  Identities=20%  Similarity=0.286  Sum_probs=205.8

Q ss_pred             CeEEEEEeCC-CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969          455 RPRQFEYHPS-ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       455 ~V~~lafsP~-dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~  533 (721)
                      +|.++.|+|. ++.-+|+|+.||+|++|++.+...+..+.  +|...|..++|+ |+|.+|+|++.|.+-++||++++..
T Consensus       219 ~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~--gH~~RVs~VafH-PsG~~L~TasfD~tWRlWD~~tk~E  295 (459)
T KOG0272|consen  219 RVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLE--GHLARVSRVAFH-PSGKFLGTASFDSTWRLWDLETKSE  295 (459)
T ss_pred             ceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhh--cchhhheeeeec-CCCceeeecccccchhhcccccchh
Confidence            6889999996 47799999999999999999888888887  899999999999 7999999999999999999999665


Q ss_pred             cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969          534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS  613 (721)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs  613 (721)
                      ..         ..-.|...|.+++|+++|..+++||.|..-+|||+++|+++..+.+ |..+|.+|+|+|+| +.+||||
T Consensus       296 lL---------~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~g-H~k~I~~V~fsPNG-y~lATgs  364 (459)
T KOG0272|consen  296 LL---------LQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAG-HIKEILSVAFSPNG-YHLATGS  364 (459)
T ss_pred             hH---------hhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecc-cccceeeEeECCCc-eEEeecC
Confidence            21         2234556799999999999999999999999999999999999998 99999999999999 9999999


Q ss_pred             CCCcEEEEECCCCCceeEEEecCCCCeE-EEEEec-CCCEEEEEeCCCcEEEEEcCC----CcccccccCeEEEEECCCC
Q 004969          614 FDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSP-DDHYLLGKGSGTSMFVQSLRG----DPFRDFNMSILAAYTRPSS  687 (721)
Q Consensus       614 ~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSp-dg~~Lasgs~Dg~I~VWDl~g----~~l~~~~~~V~~v~fsP~~  687 (721)
                      .|++++|||+|....  ++++++|...| .+.|+| .|.+|+|++.|++++||.-++    +.+.+|...|.++..+|++
T Consensus       365 ~Dnt~kVWDLR~r~~--ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~  442 (459)
T KOG0272|consen  365 SDNTCKVWDLRMRSE--LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDS  442 (459)
T ss_pred             CCCcEEEeeeccccc--ceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCC
Confidence            999999999998754  88899999998 799999 889999999999999999773    3477889999999999999


Q ss_pred             CcccccccEEEEecCC
Q 004969          688 KSEIVKVNLLASTDHC  703 (721)
Q Consensus       688 ~~~~v~v~lLASgs~~  703 (721)
                             ..++|++..
T Consensus       443 -------~~i~t~s~D  451 (459)
T KOG0272|consen  443 -------QAIATSSFD  451 (459)
T ss_pred             -------ceEEEeccC
Confidence                   999999876

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.8e-29  Score=261.04  Aligned_cols=225  Identities=20%  Similarity=0.283  Sum_probs=188.0

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEE-EeecCCCCCCeEEEEEee----CCCCEEEEEeCCCeEEEEEcC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVS-YIPSFGAMNSVLGLCWLK----KYPSKLIAGSDNGSLKLYDIR  529 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~-~l~~~~H~~~V~sl~fsp----~d~~~LaSgs~DGtVrIWDi~  529 (721)
                      -|.|++|+| |++.||+|+.||+|++||.++|+.+. .++  +|...|++++|.|    +...+|+++|.||+|+|||+.
T Consensus       159 WVlcvawsP-Dgk~iASG~~dg~I~lwdpktg~~~g~~l~--gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~  235 (480)
T KOG0271|consen  159 WVLCVAWSP-DGKKIASGSKDGSIRLWDPKTGQQIGRALR--GHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK  235 (480)
T ss_pred             EEEEEEECC-CcchhhccccCCeEEEecCCCCCccccccc--CcccceeEEeecccccCCCccceecccCCCCEEEEEcc
Confidence            599999999 99999999999999999999988754 454  9999999999976    345699999999999999998


Q ss_pred             CCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEE-----------------------
Q 004969          530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQ-----------------------  586 (721)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~-----------------------  586 (721)
                      .+.+.         .....|..+|+|+.| -..+++++++.|++|++|+...|...+                       
T Consensus       236 ~~~~~---------~~lsgHT~~VTCvrw-GG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtg  305 (480)
T KOG0271|consen  236 LGTCV---------RTLSGHTASVTCVRW-GGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTG  305 (480)
T ss_pred             CceEE---------EEeccCccceEEEEE-cCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcc
Confidence            86542         223345567888888 335677777788888888776543222                       


Q ss_pred             --------------------------------------------------------EEccccCCCeEEEEEcCCCCcEEE
Q 004969          587 --------------------------------------------------------VFADMHKEHINVVKFSNHSPSIFA  610 (721)
Q Consensus       587 --------------------------------------------------------~l~~~h~~~V~sI~fsPdg~~lLa  610 (721)
                                                                              .+.+ |..-|+.+.|+||+ +++|
T Consensus       306 af~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtg-Hq~lVn~V~fSPd~-r~IA  383 (480)
T KOG0271|consen  306 AFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTG-HQALVNHVSFSPDG-RYIA  383 (480)
T ss_pred             ccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhc-hhhheeeEEECCCc-cEEE
Confidence                                                                    2223 77789999999999 8999


Q ss_pred             EEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCc----ccccccCeEEEEECC
Q 004969          611 TSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDP----FRDFNMSILAAYTRP  685 (721)
Q Consensus       611 Sgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~----l~~~~~~V~~v~fsP  685 (721)
                      ++|.|.+||+||.++++.  +.++.+|.+.+ .++|+.|.+.|++|+.|.++++|+++.+.    +.+|...|.++.|+|
T Consensus       384 SaSFDkSVkLW~g~tGk~--lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwsp  461 (480)
T KOG0271|consen  384 SASFDKSVKLWDGRTGKF--LASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSP  461 (480)
T ss_pred             EeecccceeeeeCCCcch--hhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecC
Confidence            999999999999999965  66778999998 89999999999999999999999999554    456888999999999


Q ss_pred             CCCcccccccEEEEecCC
Q 004969          686 SSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       686 ~~~~~~v~v~lLASgs~~  703 (721)
                      +|       ...|+|+..
T Consensus       462 DG-------~rV~sggkd  472 (480)
T KOG0271|consen  462 DG-------QRVASGGKD  472 (480)
T ss_pred             CC-------ceeecCCCc
Confidence            99       888888875

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.96  E-value=4.4e-27  Score=236.67  Aligned_cols=228  Identities=22%  Similarity=0.301  Sum_probs=181.7

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeec----------------------------------------
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPS----------------------------------------  494 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~----------------------------------------  494 (721)
                      .|.++.|++ |.+++++++.||.+.|||..+...++.++.                                        
T Consensus        57 Ki~~~~ws~-Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~  135 (343)
T KOG0286|consen   57 KIYAMDWST-DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNV  135 (343)
T ss_pred             ceeeeEecC-CcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccc
Confidence            467777777 777777777777777777654433333221                                        


Q ss_pred             ------CCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEec-CCCEEEE
Q 004969          495 ------FGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNS-MDELFLA  567 (721)
Q Consensus       495 ------~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp-~~~~lls  567 (721)
                            .+|.+.+.+..|.  +...|+|+|.|.+..+||+++++..         ...-.|.+.|.++++.| +++.|++
T Consensus       136 ~v~r~l~gHtgylScC~f~--dD~~ilT~SGD~TCalWDie~g~~~---------~~f~GH~gDV~slsl~p~~~ntFvS  204 (343)
T KOG0286|consen  136 RVSRELAGHTGYLSCCRFL--DDNHILTGSGDMTCALWDIETGQQT---------QVFHGHTGDVMSLSLSPSDGNTFVS  204 (343)
T ss_pred             eeeeeecCccceeEEEEEc--CCCceEecCCCceEEEEEcccceEE---------EEecCCcccEEEEecCCCCCCeEEe
Confidence                  2677777777774  3566777777777777777776541         11224667899999999 8899999


Q ss_pred             EeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCe-EEEEEe
Q 004969          568 SGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGN-VMVCFS  646 (721)
Q Consensus       568 ~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~-vsl~fS  646 (721)
                      |+.|+..++||+|.+..+++|.+ |...|++|.|.|+| .-|++|+.|+++|+||+|..+...++........ ++++||
T Consensus       205 g~cD~~aklWD~R~~~c~qtF~g-hesDINsv~ffP~G-~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS  282 (343)
T KOG0286|consen  205 GGCDKSAKLWDVRSGQCVQTFEG-HESDINSVRFFPSG-DAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFS  282 (343)
T ss_pred             cccccceeeeeccCcceeEeecc-cccccceEEEccCC-CeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEc
Confidence            99999999999999999999998 99999999999999 8999999999999999999876666664444333 499999


Q ss_pred             cCCCEEEEEeCCCcEEEEEcC-CC---cccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          647 PDDHYLLGKGSGTSMFVQSLR-GD---PFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       647 pdg~~Lasgs~Dg~I~VWDl~-g~---~l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      ..|++|++|..|.++.|||.- +.   .+.+|+..|.++..+|+|       -.++|||=.
T Consensus       283 ~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG-------~av~TgSWD  336 (343)
T KOG0286|consen  283 KSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDG-------MAVATGSWD  336 (343)
T ss_pred             ccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCC-------cEEEecchh
Confidence            999999999999999999965 32   367889999999999999       888888743

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.96  E-value=5.3e-28  Score=269.93  Aligned_cols=225  Identities=20%  Similarity=0.308  Sum_probs=198.9

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe-------------------------------EEEEeecCCCCCCeEE
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN-------------------------------IVSYIPSFGAMNSVLG  503 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~-------------------------------~i~~l~~~~H~~~V~s  503 (721)
                      .++|..|++ ++.++|.|..|..|++|.+...+                               ...+  ..||.++|.+
T Consensus       380 ~v~ca~fSd-dssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~--L~GH~GPVyg  456 (707)
T KOG0263|consen  380 GVTCAEFSD-DSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRT--LYGHSGPVYG  456 (707)
T ss_pred             cceeEeecC-CcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEE--eecCCCceee
Confidence            389999999 89999999999999999876311                               1112  2399999999


Q ss_pred             EEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEe-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 004969          504 LCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSG  582 (721)
Q Consensus       504 l~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~  582 (721)
                      ..|+ |+.++|+++|.|++||+|.+.+...          .+.+ .|..||+.+.|+|.|-+|+++|.|++-++|.....
T Consensus       457 ~sFs-Pd~rfLlScSED~svRLWsl~t~s~----------~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~  525 (707)
T KOG0263|consen  457 CSFS-PDRRFLLSCSEDSSVRLWSLDTWSC----------LVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN  525 (707)
T ss_pred             eeec-ccccceeeccCCcceeeeeccccee----------EEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC
Confidence            9998 7899999999999999999999543          4444 45578999999999999999999999999999999


Q ss_pred             cEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcE
Q 004969          583 RRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSM  661 (721)
Q Consensus       583 ~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I  661 (721)
                      .+.+.|.+ |.+.|.|+.|+|+. ++++|||.|.+||+||+.++..  +..+.||.+++ +++|||+|+||++|+.||.|
T Consensus       526 ~PlRifag-hlsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~--VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I  601 (707)
T KOG0263|consen  526 KPLRIFAG-HLSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNS--VRIFTGHKGPVTALAFSPCGRYLASGDEDGLI  601 (707)
T ss_pred             Cchhhhcc-cccccceEEECCcc-cccccCCCCceEEEEEcCCCcE--EEEecCCCCceEEEEEcCCCceEeecccCCcE
Confidence            99999998 99999999999999 8999999999999999999966  44557888888 99999999999999999999


Q ss_pred             EEEEcCC-C---cccccccCeEEEEECCCCCcccccccEEEEecCCC
Q 004969          662 FVQSLRG-D---PFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCD  704 (721)
Q Consensus       662 ~VWDl~g-~---~l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~~  704 (721)
                      .+||+.+ .   .+++|.+.|.++.|+.++       .+||+||..+
T Consensus       602 ~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg-------~vLasgg~Dn  641 (707)
T KOG0263|consen  602 KIWDLANGSLVKQLKGHTGTIYSLSFSRDG-------NVLASGGADN  641 (707)
T ss_pred             EEEEcCCCcchhhhhcccCceeEEEEecCC-------CEEEecCCCC
Confidence            9999984 3   367888999999999999       9999999873

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.95  E-value=2.8e-27  Score=264.23  Aligned_cols=196  Identities=16%  Similarity=0.298  Sum_probs=180.4

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      +|....|+| +.++|++++.|++||+|.+.+..++..++  ||..+|+.+.|+ |.|-++||||.|++-++|......+ 
T Consensus       453 PVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~--GH~~PVwdV~F~-P~GyYFatas~D~tArLWs~d~~~P-  527 (707)
T KOG0263|consen  453 PVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYK--GHLAPVWDVQFA-PRGYYFATASHDQTARLWSTDHNKP-  527 (707)
T ss_pred             ceeeeeecc-cccceeeccCCcceeeeecccceeEEEec--CCCcceeeEEec-CCceEEEecCCCceeeeeecccCCc-
Confidence            699999999 99999999999999999999999988888  999999999999 6899999999999999999988544 


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF  614 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~  614 (721)
                              ..+...|-..|.|+.|||+..++++||.|.+||+||+.+|..++.|.| |.++|.+++|+|+| ++|++|+.
T Consensus       528 --------lRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G-H~~~V~al~~Sp~G-r~LaSg~e  597 (707)
T KOG0263|consen  528 --------LRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG-HKGPVTALAFSPCG-RYLASGDE  597 (707)
T ss_pred             --------hhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC-CCCceEEEEEcCCC-ceEeeccc
Confidence                    233345667899999999999999999999999999999999999998 99999999999999 89999999


Q ss_pred             CCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          615 DQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       615 DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                      ||.|++||+.++..  +..+.+|.+.+ ++.||.+|..||+|+.|++|++||+.
T Consensus       598 d~~I~iWDl~~~~~--v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~  649 (707)
T KOG0263|consen  598 DGLIKIWDLANGSL--VKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT  649 (707)
T ss_pred             CCcEEEEEcCCCcc--hhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence            99999999999854  56677788887 99999999999999999999999986

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.95  E-value=4.9e-28  Score=252.38  Aligned_cols=238  Identities=22%  Similarity=0.296  Sum_probs=200.8

Q ss_pred             cCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969          454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~  533 (721)
                      ..|+++.|++ ++.++++|..+|.|++|+..- ..++.++. .|..+|++++|+| +...+++||+||+|+|||....++
T Consensus       139 s~Vr~m~ws~-~g~wmiSgD~gG~iKyWqpnm-nnVk~~~a-hh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~ke  214 (464)
T KOG0284|consen  139 SPVRTMKWSH-NGTWMISGDKGGMIKYWQPNM-NNVKIIQA-HHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKE  214 (464)
T ss_pred             ccceeEEEcc-CCCEEEEcCCCceEEecccch-hhhHHhhH-hhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCch
Confidence            4799999999 999999999999999999863 34444442 4558999999995 778899999999999999987654


Q ss_pred             cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969          534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS  613 (721)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs  613 (721)
                               ..+...|...|.+++|||..+.++++|.|..|++||.++|+++.++.+ |+..|..+.|+|++ ++|+|+|
T Consensus       215 ---------e~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~-HKntVl~~~f~~n~-N~Llt~s  283 (464)
T KOG0284|consen  215 ---------ERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHG-HKNTVLAVKFNPNG-NWLLTGS  283 (464)
T ss_pred             ---------hheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhh-ccceEEEEEEcCCC-CeeEEcc
Confidence                     122345566799999999999999999999999999999999999997 99999999999999 8999999


Q ss_pred             CCCcEEEEECCCCCceeEEEecCCCCeE-EEEEec-CCCEEEEEeCCCcEEEEEcC-CCc----ccccccCeEEEEECCC
Q 004969          614 FDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSP-DDHYLLGKGSGTSMFVQSLR-GDP----FRDFNMSILAAYTRPS  686 (721)
Q Consensus       614 ~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSp-dg~~Lasgs~Dg~I~VWDl~-g~~----l~~~~~~V~~v~fsP~  686 (721)
                      .|..++++|+|+.  ..++...+|...+ +++|+| ....|.+|+.||.|..|.+. ..+    -..|...|.+++|||-
T Consensus       284 kD~~~kv~DiR~m--kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPl  361 (464)
T KOG0284|consen  284 KDQSCKVFDIRTM--KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPL  361 (464)
T ss_pred             CCceEEEEehhHh--HHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeecccc
Confidence            9999999999965  3367778888887 999999 55678889999999999987 233    3456789999999999


Q ss_pred             CCcccccccEEEEecCCCccccCCcccCCC
Q 004969          687 SKSEIVKVNLLASTDHCDKECSHGQHSRPS  716 (721)
Q Consensus       687 ~~~~~v~v~lLASgs~~~ke~s~~~~~~p~  716 (721)
                      |       .+||+|+.. +...+..+.+|-
T Consensus       362 G-------hil~tgsnd-~t~rfw~r~rp~  383 (464)
T KOG0284|consen  362 G-------HILATGSND-RTVRFWTRNRPG  383 (464)
T ss_pred             c-------eeEeecCCC-cceeeeccCCCC
Confidence            9       999999987 544555554543

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.95  E-value=3e-26  Score=229.56  Aligned_cols=225  Identities=15%  Similarity=0.235  Sum_probs=184.9

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|..+..++ ++++.++|+.||++++||+.+|+..+.+.  ||...|.+++|+ +++..++|||.|.+|++|++.+... 
T Consensus        65 ~v~dv~~s~-dg~~alS~swD~~lrlWDl~~g~~t~~f~--GH~~dVlsva~s-~dn~qivSGSrDkTiklwnt~g~ck-  139 (315)
T KOG0279|consen   65 FVSDVVLSS-DGNFALSASWDGTLRLWDLATGESTRRFV--GHTKDVLSVAFS-TDNRQIVSGSRDKTIKLWNTLGVCK-  139 (315)
T ss_pred             EecceEEcc-CCceEEeccccceEEEEEecCCcEEEEEE--ecCCceEEEEec-CCCceeecCCCcceeeeeeecccEE-
Confidence            478899999 99999999999999999999998888887  999999999998 7889999999999999999987432 


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSM--DELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS  612 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~--~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg  612 (721)
                      +...       .-.+.+.|.++.|+|.  ...|+++|.|++|++||+++.+....+.+ |.+.++.++++||| .+.++|
T Consensus       140 ~t~~-------~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~g-h~~~v~t~~vSpDG-slcasG  210 (315)
T KOG0279|consen  140 YTIH-------EDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIG-HSGYVNTVTVSPDG-SLCASG  210 (315)
T ss_pred             EEEe-------cCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcccc-ccccEEEEEECCCC-CEEecC
Confidence            1100       0011456999999998  78999999999999999999999999997 99999999999999 899999


Q ss_pred             ECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCc-cccc------------ccCeE
Q 004969          613 SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDP-FRDF------------NMSIL  679 (721)
Q Consensus       613 s~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~-l~~~------------~~~V~  679 (721)
                      +.||.+.+||++.++.  ++.+.+...+.+++|+|+..+|+.+. +..|+|||+..+. +...            .....
T Consensus       211 gkdg~~~LwdL~~~k~--lysl~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~cl  287 (315)
T KOG0279|consen  211 GKDGEAMLWDLNEGKN--LYSLEAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICL  287 (315)
T ss_pred             CCCceEEEEEccCCce--eEeccCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEE
Confidence            9999999999999865  77776555555999999887777655 6679999987432 1111            12355


Q ss_pred             EEEECCCCCcccccccEEEEecCC
Q 004969          680 AAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       680 ~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      .++|+++|       ..|.+|-..
T Consensus       288 slaws~dG-------~tLf~g~td  304 (315)
T KOG0279|consen  288 SLAWSADG-------QTLFAGYTD  304 (315)
T ss_pred             EEEEcCCC-------cEEEeeecC
Confidence            68999999       555555443

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=2.7e-28  Score=251.12  Aligned_cols=266  Identities=18%  Similarity=0.281  Sum_probs=226.4

Q ss_pred             cccccCCCCCCCCCcccceeeeeeeeeecC-CCCCCceeeeeccCCCCCCCCCccCeEEEEEeCCCCCEEEEEECCCeEE
Q 004969          401 RGKTSRHKTSYPSGMSQYFYTRSLCAAKVG-SSAWPCLHTLTVSGNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIV  479 (721)
Q Consensus       401 ~~~~r~~d~~~~p~~~~~~~~r~l~a~k~~-~~a~p~~~~l~~~gh~~~~~~~~~~V~~lafsP~dg~~LasGs~DG~I~  479 (721)
                      ...+|+++|.+|||.++++|+|+++|+|++ ++++||+.++  .||.+|       |.|++=+|..-..+++|+.||.|+
T Consensus        22 ~~~~rn~dp~lhPfe~~rEy~RALNAtKleR~fakPFv~~L--~gHrdG-------V~~lakhp~~ls~~aSGs~DG~Vk   92 (433)
T KOG0268|consen   22 QRVPRNYDPALHPFERAREYTRALNATKLERVFAKPFVGSL--DGHRDG-------VSCLAKHPNKLSTVASGSCDGEVK   92 (433)
T ss_pred             cccccccCCcCChhhhHHHHHHHhhhHHHHHHhhccchhhc--cccccc-------cchhhcCcchhhhhhccccCceEE
Confidence            346789999999999999999999999999 9999999988  488886       678999995558899999999999


Q ss_pred             EEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEe
Q 004969          480 VVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVN  559 (721)
Q Consensus       480 IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s  559 (721)
                      |||+....+..++.  +|.+.|.++++. .  +.++++|.|.+|+.|.+...           ...++.....+..++-+
T Consensus        93 iWnlsqR~~~~~f~--AH~G~V~Gi~v~-~--~~~~tvgdDKtvK~wk~~~~-----------p~~tilg~s~~~gIdh~  156 (433)
T KOG0268|consen   93 IWNLSQRECIRTFK--AHEGLVRGICVT-Q--TSFFTVGDDKTVKQWKIDGP-----------PLHTILGKSVYLGIDHH  156 (433)
T ss_pred             EEehhhhhhhheee--cccCceeeEEec-c--cceEEecCCcceeeeeccCC-----------cceeeeccccccccccc
Confidence            99999999999988  899999999986 3  77899999999999999873           23344555667788877


Q ss_pred             cCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCC
Q 004969          560 SMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKG  639 (721)
Q Consensus       560 p~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~  639 (721)
                      ..+..++++|.  .|.|||.....++..+.. ....|.++.|+|....+|++|+.|+.|.+||+|+..+  +..+.-...
T Consensus       157 ~~~~~FaTcGe--~i~IWD~~R~~Pv~smsw-G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~P--l~KVi~~mR  231 (433)
T KOG0268|consen  157 RKNSVFATCGE--QIDIWDEQRDNPVSSMSW-GADSISSVKFNPVETSILASCASDRSIVLYDLRQASP--LKKVILTMR  231 (433)
T ss_pred             cccccccccCc--eeeecccccCCccceeec-CCCceeEEecCCCcchheeeeccCCceEEEecccCCc--cceeeeecc
Confidence            78888988885  499999999999999997 6778999999999888999999999999999999854  433333334


Q ss_pred             eEEEEEecCCCEEEEEeCCCcEEEEEcC--CCc---ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          640 NVMVCFSPDDHYLLGKGSGTSMFVQSLR--GDP---FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       640 ~vsl~fSpdg~~Lasgs~Dg~I~VWDl~--g~~---l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      ...++|+|.+-.+++|+.|..++.||++  ..+   .++|...|+.+.|+|.|       .-++|||-.
T Consensus       232 TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG-------~EfvsgsyD  293 (433)
T KOG0268|consen  232 TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTG-------QEFVSGSYD  293 (433)
T ss_pred             ccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCc-------chhcccccc
Confidence            4478999988889999999999999998  344   45666789999999999       777777766

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.95  E-value=2.9e-26  Score=242.82  Aligned_cols=225  Identities=20%  Similarity=0.362  Sum_probs=192.8

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      -|++++|+. +|.+||+|+.||.++||+.. |..+.++.  .|.++|.++.|+ ..+++|++++-||++.+||..++...
T Consensus       237 dVT~L~Wn~-~G~~LatG~~~G~~riw~~~-G~l~~tl~--~HkgPI~slKWn-k~G~yilS~~vD~ttilwd~~~g~~~  311 (524)
T KOG0273|consen  237 DVTSLDWNN-DGTLLATGSEDGEARIWNKD-GNLISTLG--QHKGPIFSLKWN-KKGTYILSGGVDGTTILWDAHTGTVK  311 (524)
T ss_pred             CcceEEecC-CCCeEEEeecCcEEEEEecC-chhhhhhh--ccCCceEEEEEc-CCCCEEEeccCCccEEEEeccCceEE
Confidence            599999999 99999999999999999976 66777776  799999999998 89999999999999999999765431


Q ss_pred             ccc-------------------------------cccCcceeEe-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 004969          535 IRG-------------------------------MHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSG  582 (721)
Q Consensus       535 ~~~-------------------------------~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~  582 (721)
                      .+.                               +....+..++ .|+.+|.++.|+|.+..++++++|++++||.+...
T Consensus       312 q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~  391 (524)
T KOG0273|consen  312 QQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS  391 (524)
T ss_pred             EeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC
Confidence            110                               0011112222 37788999999999999999999999999999999


Q ss_pred             cEEEEEccccCCCeEEEEEcCCCC--------cEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEE
Q 004969          583 RRLQVFADMHKEHINVVKFSNHSP--------SIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLL  653 (721)
Q Consensus       583 ~~v~~l~~~h~~~V~sI~fsPdg~--------~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~La  653 (721)
                      .....+.. |...|+.+.|+|.|+        ..+++++.|++|++||+..+  ++++.+..|..+| +++|+|+|+|++
T Consensus       392 ~~~~~l~~-Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g--v~i~~f~kH~~pVysvafS~~g~ylA  468 (524)
T KOG0273|consen  392 NSVHDLQA-HSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG--VPIHTLMKHQEPVYSVAFSPNGRYLA  468 (524)
T ss_pred             cchhhhhh-hccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC--ceeEeeccCCCceEEEEecCCCcEEE
Confidence            99999997 999999999999874        47999999999999999998  5578888888888 999999999999


Q ss_pred             EEeCCCcEEEEEcC-CCccccc--ccCeEEEEECCCC
Q 004969          654 GKGSGTSMFVQSLR-GDPFRDF--NMSILAAYTRPSS  687 (721)
Q Consensus       654 sgs~Dg~I~VWDl~-g~~l~~~--~~~V~~v~fsP~~  687 (721)
                      +|+.||.|.+|+.+ ++.++..  ...|..+.|+-.+
T Consensus       469 sGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G  505 (524)
T KOG0273|consen  469 SGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAG  505 (524)
T ss_pred             ecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCC
Confidence            99999999999998 5555555  3468999999998

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.94  E-value=3.8e-27  Score=245.78  Aligned_cols=226  Identities=19%  Similarity=0.289  Sum_probs=194.8

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|..+.|.| +|+.|++|+..|.+.+|+..+-.....+  .+|..+|.++.|+ .++.+++||+.+|.|++|+..-... 
T Consensus        98 ~V~~v~WtP-eGRRLltgs~SGEFtLWNg~~fnFEtil--QaHDs~Vr~m~ws-~~g~wmiSgD~gG~iKyWqpnmnnV-  172 (464)
T KOG0284|consen   98 PVNVVRWTP-EGRRLLTGSQSGEFTLWNGTSFNFETIL--QAHDSPVRTMKWS-HNGTWMISGDKGGMIKYWQPNMNNV-  172 (464)
T ss_pred             ceeeEEEcC-CCceeEeecccccEEEecCceeeHHHHh--hhhcccceeEEEc-cCCCEEEEcCCCceEEecccchhhh-
Confidence            588899999 9999999999999999997532222223  3899999999998 8999999999999999999876322 


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF  614 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~  614 (721)
                       +       .+...|...|++++|+|.+..|+++++||+|+|||....+....+.+ |.-.|.+++|+|.. .++++||.
T Consensus       173 -k-------~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~G-HgwdVksvdWHP~k-gLiasgsk  242 (464)
T KOG0284|consen  173 -K-------IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRG-HGWDVKSVDWHPTK-GLIASGSK  242 (464)
T ss_pred             -H-------HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheecc-CCCCcceeccCCcc-ceeEEccC
Confidence             1       12222336799999999999999999999999999999998888887 99999999999998 69999999


Q ss_pred             CCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC-C---CcccccccCeEEEEECCCCCc
Q 004969          615 DQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR-G---DPFRDFNMSILAAYTRPSSKS  689 (721)
Q Consensus       615 DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~-g---~~l~~~~~~V~~v~fsP~~~~  689 (721)
                      |..|++||.+++.+  +.++.+|...| .+.|+|++.+|+++|.|..++++|++ .   ..+++|+..|.++.|||-.. 
T Consensus       243 DnlVKlWDprSg~c--l~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~-  319 (464)
T KOG0284|consen  243 DNLVKLWDPRSGSC--LATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNE-  319 (464)
T ss_pred             CceeEeecCCCcch--hhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccc-
Confidence            99999999999966  66778888888 89999999999999999999999998 2   23678889999999999874 


Q ss_pred             ccccccEEEEecCC
Q 004969          690 EIVKVNLLASTDHC  703 (721)
Q Consensus       690 ~~v~v~lLASgs~~  703 (721)
                           .++++|+..
T Consensus       320 -----~lftsgg~D  328 (464)
T KOG0284|consen  320 -----SLFTSGGSD  328 (464)
T ss_pred             -----cceeeccCC
Confidence                 677777765

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.94  E-value=3.6e-25  Score=221.79  Aligned_cols=218  Identities=21%  Similarity=0.277  Sum_probs=185.0

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECC-----CCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHE-----NENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIR  529 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~-----tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~  529 (721)
                      -|++++..+.+.+.+++++.|.++.+|++.     .|..++.+.  ||...|..+..+ +++++.++++.||++++||+.
T Consensus        17 ~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~--GHsH~v~dv~~s-~dg~~alS~swD~~lrlWDl~   93 (315)
T KOG0279|consen   17 WVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLT--GHSHFVSDVVLS-SDGNFALSASWDGTLRLWDLA   93 (315)
T ss_pred             eEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeee--ccceEecceEEc-cCCceEEeccccceEEEEEec
Confidence            489999999778999999999999999875     466677777  888899999988 899999999999999999999


Q ss_pred             CCCCcccccccCcceeEe-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCC-Cc
Q 004969          530 HMPPSIRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHS-PS  607 (721)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg-~~  607 (721)
                      +++.          ...| .|...|.++++++++..+++|+.|++|++|+...+.....-...+.+.|+++.|+|.. ..
T Consensus        94 ~g~~----------t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p  163 (315)
T KOG0279|consen   94 TGES----------TRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNP  163 (315)
T ss_pred             CCcE----------EEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCc
Confidence            9754          3333 4556799999999999999999999999999985544444444348999999999984 35


Q ss_pred             EEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC-CCccc--ccccCeEEEEE
Q 004969          608 IFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR-GDPFR--DFNMSILAAYT  683 (721)
Q Consensus       608 lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~l~--~~~~~V~~v~f  683 (721)
                      ++++++.|++||+||+++-+.  ...+.+|.+.+ .+++||||..+++|+.||.+.+||++ ++.+.  ++...|.+++|
T Consensus       164 ~Ivs~s~DktvKvWnl~~~~l--~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~f  241 (315)
T KOG0279|consen  164 IIVSASWDKTVKVWNLRNCQL--RTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCF  241 (315)
T ss_pred             EEEEccCCceEEEEccCCcch--hhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEe
Confidence            999999999999999998644  55667888888 89999999999999999999999998 44333  44568999999


Q ss_pred             CCCC
Q 004969          684 RPSS  687 (721)
Q Consensus       684 sP~~  687 (721)
                      +|..
T Consensus       242 spnr  245 (315)
T KOG0279|consen  242 SPNR  245 (315)
T ss_pred             cCCc
Confidence            9998

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.94  E-value=3.6e-25  Score=244.94  Aligned_cols=232  Identities=18%  Similarity=0.289  Sum_probs=194.2

Q ss_pred             cCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969          454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~  533 (721)
                      .+++|++++| ||+++|+|+.||.|+|||..+|-+..++.  .|+..|++++|+ ..++.++++|.||+|+.||+...+.
T Consensus       351 ~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~vTFt--eHts~Vt~v~f~-~~g~~llssSLDGtVRAwDlkRYrN  426 (893)
T KOG0291|consen  351 DRITSLAYSP-DGQLIATGAEDGKVKVWNTQSGFCFVTFT--EHTSGVTAVQFT-ARGNVLLSSSLDGTVRAWDLKRYRN  426 (893)
T ss_pred             cceeeEEECC-CCcEEEeccCCCcEEEEeccCceEEEEec--cCCCceEEEEEE-ecCCEEEEeecCCeEEeeeecccce
Confidence            4799999999 99999999999999999999999999998  899999999998 8999999999999999999988554


Q ss_pred             cccccccCcceeEeccC--CCeEEEEEecCCCEEEEEeCCC-cEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEE
Q 004969          534 SIRGMHYGAGTVTFDEF--DQLTSVHVNSMDELFLASGYSK-NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFA  610 (721)
Q Consensus       534 ~~~~~~~~~~~~~~~~~--~~V~sv~~sp~~~~lls~g~Dg-~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLa  610 (721)
                                ..+|..+  .+..+++..|.|..+.+|+.|. .|.+|++++|+.+-.+.| |.++|.+++|+|++ ..|+
T Consensus       427 ----------fRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsG-HEgPVs~l~f~~~~-~~La  494 (893)
T KOG0291|consen  427 ----------FRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSG-HEGPVSGLSFSPDG-SLLA  494 (893)
T ss_pred             ----------eeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcC-CCCcceeeEEcccc-CeEE
Confidence                      2333333  3468899989899999999775 599999999999999998 99999999999999 7999


Q ss_pred             EEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCC-cc---------------c--
Q 004969          611 TSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGD-PF---------------R--  672 (721)
Q Consensus       611 Sgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~-~l---------------~--  672 (721)
                      +||.|.+||+||+-... ..+-++........++|+|+|+.|++++.||.|.+||.... ..               .  
T Consensus       495 S~SWDkTVRiW~if~s~-~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~  573 (893)
T KOG0291|consen  495 SGSWDKTVRIWDIFSSS-GTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDR  573 (893)
T ss_pred             eccccceEEEEEeeccC-ceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccce
Confidence            99999999999997642 22344555556668999999999999999999999997511 00               0  


Q ss_pred             ------ccccCeEEEEECCCCCcccccccEEEEecCCCccccC
Q 004969          673 ------DFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSH  709 (721)
Q Consensus       673 ------~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~~ke~s~  709 (721)
                            ........+.++++|       ..|.+||.....+.+
T Consensus       574 ~ta~~sa~~K~Ftti~ySaDG-------~~IlAgG~sn~iCiY  609 (893)
T KOG0291|consen  574 ITAENSAKGKTFTTICYSADG-------KCILAGGESNSICIY  609 (893)
T ss_pred             eehhhcccCCceEEEEEcCCC-------CEEEecCCcccEEEE
Confidence                  002467889999999       888888877444433

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.94  E-value=1.5e-26  Score=245.88  Aligned_cols=228  Identities=20%  Similarity=0.273  Sum_probs=193.7

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCC-CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHEN-ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~t-g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~  533 (721)
                      .|+++.|.|..+.++++|+.|+.|+||++.. +++++++.  +|..+|.+++|+ +++..++|+|.|++|++||+++|+.
T Consensus       216 gvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~--gH~k~Vrd~~~s-~~g~~fLS~sfD~~lKlwDtETG~~  292 (503)
T KOG0282|consen  216 GVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFK--GHRKPVRDASFN-NCGTSFLSASFDRFLKLWDTETGQV  292 (503)
T ss_pred             ccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhh--cchhhhhhhhcc-ccCCeeeeeecceeeeeeccccceE
Confidence            3789999998899999999999999999976 88999998  999999999998 8999999999999999999999776


Q ss_pred             cccccccCcceeEeccCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969          534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMD-ELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS  612 (721)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~-~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg  612 (721)
                                ...|.....++++.++|++ ..|++|+.|+.|+.||+++++.++++.. |-+.|..+.|-++| ..+++.
T Consensus       293 ----------~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~-hLg~i~~i~F~~~g-~rFiss  360 (503)
T KOG0282|consen  293 ----------LSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR-HLGAILDITFVDEG-RRFISS  360 (503)
T ss_pred             ----------EEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh-hhhheeeeEEccCC-ceEeee
Confidence                      4556566678999999999 7788888999999999999999999886 99999999999999 899999


Q ss_pred             ECCCcEEEEECCCCCce--------------------------------eEEE------------ecCCC---CeEEEEE
Q 004969          613 SFDQDVKLWDLRQKPIQ--------------------------------PCYT------------ASSSK---GNVMVCF  645 (721)
Q Consensus       613 s~DgtIrIWDlrs~~~~--------------------------------~~~~------------~~~~~---~~vsl~f  645 (721)
                      +.|++++||+.+.+-..                                .++.            +.+|.   -.+.+.|
T Consensus       361 SDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f  440 (503)
T KOG0282|consen  361 SDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF  440 (503)
T ss_pred             ccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence            99999999998763110                                0010            11221   1236899


Q ss_pred             ecCCCEEEEEeCCCcEEEEEcCC----CcccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          646 SPDDHYLLGKGSGTSMFVQSLRG----DPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       646 Spdg~~Lasgs~Dg~I~VWDl~g----~~l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      ||||++|++|+.||.+.+||.+.    ..++.|..++..+.|||...      ..+|+||-.
T Consensus       441 SpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~------Skvat~~w~  496 (503)
T KOG0282|consen  441 SPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEP------SKVATCGWD  496 (503)
T ss_pred             cCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCc------ceeEecccC
Confidence            99999999999999999999873    34677788999999999985      677777744

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.94  E-value=4e-25  Score=223.33  Aligned_cols=227  Identities=19%  Similarity=0.262  Sum_probs=196.5

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      +|..+.|.+ +++.+++++.|.+|+.||+++|+.++.++  +|.+-|.++.-+.....++.||+.||++++||+++... 
T Consensus        92 AVM~l~~~~-d~s~i~S~gtDk~v~~wD~~tG~~~rk~k--~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~-  167 (338)
T KOG0265|consen   92 AVMELHGMR-DGSHILSCGTDKTVRGWDAETGKRIRKHK--GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA-  167 (338)
T ss_pred             eeEeeeecc-CCCEEEEecCCceEEEEecccceeeehhc--cccceeeecCccccCCeEEEecCCCceEEEEeecccch-
Confidence            699999999 99999999999999999999999999888  89999999985545567889999999999999998443 


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF  614 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~  614 (721)
                               ...+....+++++.|...+..+++|+-|+.|++||++.+...+.+.| |...|+.+..+|+| ..+.+-+.
T Consensus       168 ---------~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsG-h~DtIt~lsls~~g-s~llsnsM  236 (338)
T KOG0265|consen  168 ---------IKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSG-HADTITGLSLSRYG-SFLLSNSM  236 (338)
T ss_pred             ---------hhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeec-ccCceeeEEeccCC-Cccccccc
Confidence                     33455556789999999999999999999999999999999999998 99999999999999 79999999


Q ss_pred             CCcEEEEECCCC----CceeEEEecCCCCe---EEEEEecCCCEEEEEeCCCcEEEEEcCCCc----ccccccCeEEEEE
Q 004969          615 DQDVKLWDLRQK----PIQPCYTASSSKGN---VMVCFSPDDHYLLGKGSGTSMFVQSLRGDP----FRDFNMSILAAYT  683 (721)
Q Consensus       615 DgtIrIWDlrs~----~~~~~~~~~~~~~~---vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~----l~~~~~~V~~v~f  683 (721)
                      |.++++||+|-.    ++..++....|.-.   ..++|+|+++++.+|+.|..+++||...+.    +.+|.+.|.++.|
T Consensus       237 d~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~F  316 (338)
T KOG0265|consen  237 DNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDF  316 (338)
T ss_pred             cceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeee
Confidence            999999999853    23334433333222   278999999999999999999999988543    5678899999999


Q ss_pred             CCCCCcccccccEEEEecCC
Q 004969          684 RPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       684 sP~~~~~~v~v~lLASgs~~  703 (721)
                      ||..       ++|.+|+..
T Consensus       317 hp~e-------~iils~~sd  329 (338)
T KOG0265|consen  317 HPTE-------PIILSCSSD  329 (338)
T ss_pred             cCCC-------cEEEEeccC
Confidence            9999       999999887

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.93  E-value=1.7e-24  Score=213.82  Aligned_cols=226  Identities=14%  Similarity=0.229  Sum_probs=196.2

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeE--EEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENI--VSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP  532 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~--i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~  532 (721)
                      .|..++..| +++.||+|+.. .||+||+.++..  +.++.  +|.+.|++|.|. .+++++++||.||+++|||++...
T Consensus        42 qVNrLeiTp-dk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e--~h~kNVtaVgF~-~dgrWMyTgseDgt~kIWdlR~~~  116 (311)
T KOG0315|consen   42 QVNRLEITP-DKKDLAAAGNQ-HVRLYDLNSNNPNPVATFE--GHTKNVTAVGFQ-CDGRWMYTGSEDGTVKIWDLRSLS  116 (311)
T ss_pred             ceeeEEEcC-CcchhhhccCC-eeEEEEccCCCCCceeEEe--ccCCceEEEEEe-ecCeEEEecCCCceEEEEeccCcc
Confidence            489999999 88999998866 599999998764  66666  999999999997 899999999999999999999833


Q ss_pred             CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969          533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS  612 (721)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg  612 (721)
                      .          ...+.+..+|+++..||....++++..+|.|++||+.+......+...-...|.+++..|+| ..++.+
T Consensus       117 ~----------qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dg-sml~a~  185 (311)
T KOG0315|consen  117 C----------QRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDG-SMLAAA  185 (311)
T ss_pred             c----------chhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCC-cEEEEe
Confidence            2          34567778999999999999999999999999999998877777664456789999999999 799999


Q ss_pred             ECCCcEEEEECCCC----CceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCC-----cccccccCeEEEE
Q 004969          613 SFDQDVKLWDLRQK----PIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGD-----PFRDFNMSILAAY  682 (721)
Q Consensus       613 s~DgtIrIWDlrs~----~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~-----~l~~~~~~V~~v~  682 (721)
                      ...|..++|++-+.    ...|+.++..|.+.+ .+.+|||++||++++.|.+++||+..+-     .+.+|+..+...+
T Consensus       186 nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~  265 (311)
T KOG0315|consen  186 NNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCA  265 (311)
T ss_pred             cCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeee
Confidence            99999999998764    345677788888877 8999999999999999999999998843     3456677999999


Q ss_pred             ECCCCCcccccccEEEEecCC
Q 004969          683 TRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       683 fsP~~~~~~v~v~lLASgs~~  703 (721)
                      ||.++       ..|++|+..
T Consensus       266 FS~dg-------~YlvTassd  279 (311)
T KOG0315|consen  266 FSADG-------EYLVTASSD  279 (311)
T ss_pred             eccCc-------cEEEecCCC
Confidence            99999       899999876

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.93  E-value=1.4e-24  Score=223.15  Aligned_cols=215  Identities=18%  Similarity=0.306  Sum_probs=187.0

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      -|+|+++.| ...++++|+.|++|+|||+.+|+...++.  ||...|..++++ +...++++++.|+.|+.||++..+. 
T Consensus       153 WVr~vavdP-~n~wf~tgs~DrtikIwDlatg~Lkltlt--Ghi~~vr~vavS-~rHpYlFs~gedk~VKCwDLe~nkv-  227 (460)
T KOG0285|consen  153 WVRSVAVDP-GNEWFATGSADRTIKIWDLATGQLKLTLT--GHIETVRGVAVS-KRHPYLFSAGEDKQVKCWDLEYNKV-  227 (460)
T ss_pred             eEEEEeeCC-CceeEEecCCCceeEEEEcccCeEEEeec--chhheeeeeeec-ccCceEEEecCCCeeEEEechhhhh-
Confidence            599999999 78999999999999999999999998887  999999999998 6678999999999999999998654 


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF  614 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~  614 (721)
                      +...        ..|-..|.+++.+|..+.++++|.|.++|+||+++...+..+.| |..+|.++.+.|..| .+++||.
T Consensus       228 IR~Y--------hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~G-H~~~V~~V~~~~~dp-qvit~S~  297 (460)
T KOG0285|consen  228 IRHY--------HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSG-HTNPVASVMCQPTDP-QVITGSH  297 (460)
T ss_pred             HHHh--------ccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecC-CCCcceeEEeecCCC-ceEEecC
Confidence            2222        23446789999999999999999999999999999999999998 999999999999884 8999999


Q ss_pred             CCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCC----cccccccCeEEEEECCCC
Q 004969          615 DQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGD----PFRDFNMSILAAYTRPSS  687 (721)
Q Consensus       615 DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~----~l~~~~~~V~~v~fsP~~  687 (721)
                      |++|++||++.++.  ..++..|...+ +++.+|....+++++.| .|+-|++...    .+.+|..-++.++-..++
T Consensus       298 D~tvrlWDl~agkt--~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~  372 (460)
T KOG0285|consen  298 DSTVRLWDLRAGKT--MITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG  372 (460)
T ss_pred             CceEEEeeeccCce--eEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc
Confidence            99999999999854  55666777777 89999998888888854 6899998732    245667788888888876

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.93  E-value=6.2e-24  Score=239.93  Aligned_cols=228  Identities=19%  Similarity=0.341  Sum_probs=186.9

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe--EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN--IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP  532 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~--~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~  532 (721)
                      .|.++.|+| +|..+++++.|+.+++|+..+++  ....+  .+|...|.+++|+ +++.++++|+.|++|+|||+....
T Consensus       161 sv~~~~fs~-~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l--~~h~~~v~~~~fs-~d~~~l~s~s~D~tiriwd~~~~~  236 (456)
T KOG0266|consen  161 SVTCVDFSP-DGRALAAASSDGLIRIWKLEGIKSNLLREL--SGHTRGVSDVAFS-PDGSYLLSGSDDKTLRIWDLKDDG  236 (456)
T ss_pred             ceEEEEEcC-CCCeEEEccCCCcEEEeecccccchhhccc--cccccceeeeEEC-CCCcEEEEecCCceEEEeeccCCC
Confidence            589999999 99999999999999999997777  55555  3899999999998 789999999999999999995533


Q ss_pred             CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969          533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS  612 (721)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg  612 (721)
                      ..+..        ...|...|++++|+|.++.+++|+.|++|++||+++++++..+.+ |...|++++|++++ ++++++
T Consensus       237 ~~~~~--------l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~-hs~~is~~~f~~d~-~~l~s~  306 (456)
T KOG0266|consen  237 RNLKT--------LKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKG-HSDGISGLAFSPDG-NLLVSA  306 (456)
T ss_pred             eEEEE--------ecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeec-cCCceEEEEECCCC-CEEEEc
Confidence            32222        225667889999999999999999999999999999999999997 99999999999999 899999


Q ss_pred             ECCCcEEEEECCCCCceeEEEecCCCCe--E-EEEEecCCCEEEEEeCCCcEEEEEcC-CCc---ccccccC---eEEEE
Q 004969          613 SFDQDVKLWDLRQKPIQPCYTASSSKGN--V-MVCFSPDDHYLLGKGSGTSMFVQSLR-GDP---FRDFNMS---ILAAY  682 (721)
Q Consensus       613 s~DgtIrIWDlrs~~~~~~~~~~~~~~~--v-sl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~---l~~~~~~---V~~v~  682 (721)
                      +.|+.|++||+.++.......+..+...  + ++.|+|++.++++++.|+.+++||++ +..   +.+|...   +....
T Consensus       307 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~  386 (456)
T KOG0266|consen  307 SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPT  386 (456)
T ss_pred             CCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccc
Confidence            9999999999999863223344444444  4 89999999999999999999999998 332   4444332   33334


Q ss_pred             ECCCCCcccccccEEEEecCC
Q 004969          683 TRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       683 fsP~~~~~~v~v~lLASgs~~  703 (721)
                      .++.+       ..+.+|+..
T Consensus       387 ~~~~~-------~~i~sg~~d  400 (456)
T KOG0266|consen  387 LSTGG-------KLIYSGSED  400 (456)
T ss_pred             ccCCC-------CeEEEEeCC
Confidence            45555       677777765

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=3.4e-23  Score=206.93  Aligned_cols=235  Identities=12%  Similarity=0.176  Sum_probs=195.1

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCC---eEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENE---NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM  531 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg---~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~  531 (721)
                      ++..++|+|-.|..||+++.|..|+||+...+   .+...+.. +|+..|.+++|+ |.+++|++||.|.++.||.-..+
T Consensus        16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~-~hkrsVRsvAws-p~g~~La~aSFD~t~~Iw~k~~~   93 (312)
T KOG0645|consen   16 RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDD-GHKRSVRSVAWS-PHGRYLASASFDATVVIWKKEDG   93 (312)
T ss_pred             cEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccc-cchheeeeeeec-CCCcEEEEeeccceEEEeecCCC
Confidence            69999999943789999999999999999843   34444443 899999999998 78899999999999999988764


Q ss_pred             CCcccccccCcceeEe-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC---cEEEEEccccCCCeEEEEEcCCCCc
Q 004969          532 PPSIRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSG---RRLQVFADMHKEHINVVKFSNHSPS  607 (721)
Q Consensus       532 ~~~~~~~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~---~~v~~l~~~h~~~V~sI~fsPdg~~  607 (721)
                      .-.        ....+ .|...|-+++|+++|.++++++.|+.|.||.+..+   +++..+++ |...|..+.|+|.. .
T Consensus        94 efe--------cv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~-HtqDVK~V~WHPt~-d  163 (312)
T KOG0645|consen   94 EFE--------CVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQE-HTQDVKHVIWHPTE-D  163 (312)
T ss_pred             cee--------EEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecc-ccccccEEEEcCCc-c
Confidence            431        12223 35567999999999999999999999999999854   46677776 99999999999987 7


Q ss_pred             EEEEEECCCcEEEEECC-CCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCcccccccCeEEEEECC
Q 004969          608 IFATSSFDQDVKLWDLR-QKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRP  685 (721)
Q Consensus       608 lLaSgs~DgtIrIWDlr-s~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~~~~~~V~~v~fsP  685 (721)
                      +|+++|.|.+|++|+-. ......+.++.+|...+ +++|++.|..|++++.|++++||......-..|...+..++|. 
T Consensus       164 lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~-  242 (312)
T KOG0645|consen  164 LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSGMHSRALYDVPWD-  242 (312)
T ss_pred             eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcchhcccceEeeeec-
Confidence            99999999999999887 55567788889998777 9999999999999999999999997644444556788889998 


Q ss_pred             CCCcccccccEEEEecCCCccccCC
Q 004969          686 SSKSEIVKVNLLASTDHCDKECSHG  710 (721)
Q Consensus       686 ~~~~~~v~v~lLASgs~~~ke~s~~  710 (721)
                      +        .+|||+++..+...+.
T Consensus       243 ~--------~~IaS~ggD~~i~lf~  259 (312)
T KOG0645|consen  243 N--------GVIASGGGDDAIRLFK  259 (312)
T ss_pred             c--------cceEeccCCCEEEEEE
Confidence            3        5889998875554443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=3.7e-24  Score=232.72  Aligned_cols=225  Identities=20%  Similarity=0.346  Sum_probs=201.4

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      +|.++.+|| ...+++++-..|.|.|||.++...++.+..  ..-+|.+..|- ...+++++|++|..||||+..++.. 
T Consensus        15 RVKsVd~HP-tePw~la~LynG~V~IWnyetqtmVksfeV--~~~PvRa~kfi-aRknWiv~GsDD~~IrVfnynt~ek-   89 (794)
T KOG0276|consen   15 RVKSVDFHP-TEPWILAALYNGDVQIWNYETQTMVKSFEV--SEVPVRAAKFI-ARKNWIVTGSDDMQIRVFNYNTGEK-   89 (794)
T ss_pred             ceeeeecCC-CCceEEEeeecCeeEEEecccceeeeeeee--cccchhhheee-eccceEEEecCCceEEEEeccccee-
Confidence            799999999 889999999999999999999999998874  45789999998 6789999999999999999999664 


Q ss_pred             ccccccCcceeEec-cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC-CcEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969          535 IRGMHYGAGTVTFD-EFDQLTSVHVNSMDELFLASGYSKNIALYDINS-GRRLQVFADMHKEHINVVKFSNHSPSIFATS  612 (721)
Q Consensus       535 ~~~~~~~~~~~~~~-~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s-~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg  612 (721)
                               +..|. |.+.|.+++.||..++++++++|-+|++||... ..+.++|.| |...|.+++|+|..++.+|++
T Consensus        90 ---------V~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeG-H~HyVMqv~fnPkD~ntFaS~  159 (794)
T KOG0276|consen   90 ---------VKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEG-HEHYVMQVAFNPKDPNTFASA  159 (794)
T ss_pred             ---------eEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcC-cceEEEEEEecCCCccceeee
Confidence                     44443 567799999999999999999999999999985 467889997 999999999999999999999


Q ss_pred             ECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecC--CCEEEEEeCCCcEEEEEcCCC----cccccccCeEEEEECC
Q 004969          613 SFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPD--DHYLLGKGSGTSMFVQSLRGD----PFRDFNMSILAAYTRP  685 (721)
Q Consensus       613 s~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpd--g~~Lasgs~Dg~I~VWDl~g~----~l~~~~~~V~~v~fsP  685 (721)
                      +-|++|+||.+.+.  .+.+++.+|...+ ++.|-+-  -.||++|+.|..++|||.+.+    ++.+|...|..+.|||
T Consensus       160 sLDrTVKVWslgs~--~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp  237 (794)
T KOG0276|consen  160 SLDRTVKVWSLGSP--HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHP  237 (794)
T ss_pred             eccccEEEEEcCCC--CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecC
Confidence            99999999999876  5688888998887 8999874  479999999999999999843    4778888999999999


Q ss_pred             CCCcccccccEEEEecCC
Q 004969          686 SSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       686 ~~~~~~v~v~lLASgs~~  703 (721)
                      .-       |+++|||..
T Consensus       238 ~l-------piiisgsED  248 (794)
T KOG0276|consen  238 EL-------PIIISGSED  248 (794)
T ss_pred             CC-------cEEEEecCC
Confidence            99       999999987

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.93  E-value=9.8e-24  Score=238.36  Aligned_cols=228  Identities=18%  Similarity=0.341  Sum_probs=190.5

Q ss_pred             cCeEEEEEeCCCCCEEEEEECCCeEEEEEC-CCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969          454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNH-ENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP  532 (721)
Q Consensus       454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl-~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~  532 (721)
                      ..|+.++|+| ++.++++|+.|++|+|||+ ..+..++++.  +|...|++++|+ +.++.+++|+.|++|+|||+++++
T Consensus       204 ~~v~~~~fs~-d~~~l~s~s~D~tiriwd~~~~~~~~~~l~--gH~~~v~~~~f~-p~g~~i~Sgs~D~tvriWd~~~~~  279 (456)
T KOG0266|consen  204 RGVSDVAFSP-DGSYLLSGSDDKTLRIWDLKDDGRNLKTLK--GHSTYVTSVAFS-PDGNLLVSGSDDGTVRIWDVRTGE  279 (456)
T ss_pred             cceeeeEECC-CCcEEEEecCCceEEEeeccCCCeEEEEec--CCCCceEEEEec-CCCCEEEEecCCCcEEEEeccCCe
Confidence            4699999999 9999999999999999999 5568888888  999999999999 455999999999999999999955


Q ss_pred             CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc--EEEEEccccCC--CeEEEEEcCCCCcE
Q 004969          533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR--RLQVFADMHKE--HINVVKFSNHSPSI  608 (721)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~--~v~~l~~~h~~--~V~sI~fsPdg~~l  608 (721)
                      +.         ...-.|.++|++++|++++..+++++.|+.|++||+.++.  ++..+.+ +..  .+++++|+|++ .+
T Consensus       280 ~~---------~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~fsp~~-~~  348 (456)
T KOG0266|consen  280 CV---------RKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSG-AENSAPVTSVQFSPNG-KY  348 (456)
T ss_pred             EE---------EeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccC-CCCCCceeEEEECCCC-cE
Confidence            41         2223455789999999999999999999999999999999  5677775 444  59999999999 89


Q ss_pred             EEEEECCCcEEEEECCCCCceeEEEecCCC--CeEEEEEecCCCEEEEEeCCCcEEEEEcC-CC---ccccc-ccCeEEE
Q 004969          609 FATSSFDQDVKLWDLRQKPIQPCYTASSSK--GNVMVCFSPDDHYLLGKGSGTSMFVQSLR-GD---PFRDF-NMSILAA  681 (721)
Q Consensus       609 LaSgs~DgtIrIWDlrs~~~~~~~~~~~~~--~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~-g~---~l~~~-~~~V~~v  681 (721)
                      +++++.|+.+++||++.+.....+......  ...+...++.|.++++|+.|+.|++|++. +.   .+..| ...+..+
T Consensus       349 ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~  428 (456)
T KOG0266|consen  349 LLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDL  428 (456)
T ss_pred             EEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceecc
Confidence            999999999999999988664444333222  11245567899999999999999999998 32   24556 6788999


Q ss_pred             EECCCCCcccccccEEEEecCC
Q 004969          682 YTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       682 ~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      .+||..       +++++++..
T Consensus       429 ~~~~~~-------~~~~s~s~~  443 (456)
T KOG0266|consen  429 SSHPTE-------NLIASSSFE  443 (456)
T ss_pred             ccCCCc-------CeeeecCcC
Confidence            999999       999999854

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=3.5e-24  Score=221.12  Aligned_cols=230  Identities=17%  Similarity=0.293  Sum_probs=194.2

Q ss_pred             ccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969          453 SFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP  532 (721)
Q Consensus       453 ~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~  532 (721)
                      +..|+.+-|+| +-.++++++.|++|++||..+|++...++  ||.++|.+|.|. ..+.++++++.|-.+++||..+..
T Consensus       108 r~~vt~v~~hp-~~~~v~~as~d~tikv~D~~tg~~e~~Lr--GHt~sv~di~~~-a~Gk~l~tcSsDl~~~LWd~~~~~  183 (406)
T KOG0295|consen  108 RSSVTRVIFHP-SEALVVSASEDATIKVFDTETGELERSLR--GHTDSVFDISFD-ASGKYLATCSSDLSAKLWDFDTFF  183 (406)
T ss_pred             ccceeeeeecc-CceEEEEecCCceEEEEEccchhhhhhhh--ccccceeEEEEe-cCccEEEecCCccchhheeHHHHH
Confidence            34699999999 88899999999999999999999988888  999999999998 889999999999999999998843


Q ss_pred             CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcc----------------------
Q 004969          533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD----------------------  590 (721)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~----------------------  590 (721)
                      .......        .|...|.++.|-|.|+++++++.|.+|+.|++.+|-++.+|.+                      
T Consensus       184 ~c~ks~~--------gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~  255 (406)
T KOG0295|consen  184 RCIKSLI--------GHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN  255 (406)
T ss_pred             HHHHHhc--------CcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC
Confidence            3333222        3445679999999999999999999999999999887776653                      


Q ss_pred             -------------------ccCCCeEEEEEcCC--------------CCcEEEEEECCCcEEEEECCCCCceeEEEecCC
Q 004969          591 -------------------MHKEHINVVKFSNH--------------SPSIFATSSFDQDVKLWDLRQKPIQPCYTASSS  637 (721)
Q Consensus       591 -------------------~h~~~V~sI~fsPd--------------g~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~  637 (721)
                                         .|..+|-+++|-|.              ++.++++++.|++||+||+.++.+  ++++.+|
T Consensus       256 dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~c--L~tL~gh  333 (406)
T KOG0295|consen  256 DQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMC--LFTLVGH  333 (406)
T ss_pred             CceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeE--EEEEecc
Confidence                               14455667777654              124788899999999999999844  8889999


Q ss_pred             CCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC----CcccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          638 KGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG----DPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       638 ~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g----~~l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      ..++ .++|+|.|+||++...|+++++||++.    +.+..|..-|.++.||-+.       ++++||+-.
T Consensus       334 dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~-------p~VvTGsVd  397 (406)
T KOG0295|consen  334 DNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTA-------PYVVTGSVD  397 (406)
T ss_pred             cceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCC-------ceEEecccc
Confidence            9999 899999999999999999999999983    2355677889999999998       899999875

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.92  E-value=4e-24  Score=236.75  Aligned_cols=244  Identities=18%  Similarity=0.232  Sum_probs=202.4

Q ss_pred             ccCCCCCCCCCccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeE--EEEeecCCCCCCeEEEEEeeCCCCEEEEEeC
Q 004969          442 VSGNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENI--VSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD  519 (721)
Q Consensus       442 ~~gh~~~~~~~~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~--i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~  519 (721)
                      ..||.+       .|.++.... +|.+|++|+.|.++++|.++++..  ...-+..+|.+.|.+|+++.....+|+++|.
T Consensus       361 i~GH~e-------~vlSL~~~~-~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~  432 (775)
T KOG0319|consen  361 IPGHTE-------AVLSLDVWS-SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQ  432 (775)
T ss_pred             EeCchh-------heeeeeecc-cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecC
Confidence            356666       477787444 568999999999999998854332  2222335999999999998777789999999


Q ss_pred             CCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEE
Q 004969          520 NGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVV  599 (721)
Q Consensus       520 DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI  599 (721)
                      |+++++|++...+..-....-........|...|++++++|++..+++||.|++.+||++...+...++.| |...|.+|
T Consensus       433 D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsG-H~RGvw~V  511 (775)
T KOG0319|consen  433 DCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSG-HTRGVWCV  511 (775)
T ss_pred             CceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeC-CccceEEE
Confidence            99999999987433211111111112335778899999999999999999999999999999999999998 99999999


Q ss_pred             EEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCC----ccccc
Q 004969          600 KFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGD----PFRDF  674 (721)
Q Consensus       600 ~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~----~l~~~  674 (721)
                      .|+|.. .+++|+|.|++|+||.+.+..|  +.++.||...+ .+.|-.+|..|++++.||-+++|+++..    .+-.|
T Consensus       512 ~Fs~~d-q~laT~SgD~TvKIW~is~fSC--lkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H  588 (775)
T KOG0319|consen  512 SFSKND-QLLATCSGDKTVKIWSISTFSC--LKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAH  588 (775)
T ss_pred             Eecccc-ceeEeccCCceEEEEEecccee--eeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhc
Confidence            999998 8999999999999999999866  67788999888 8999999999999999999999999843    46778


Q ss_pred             ccCeEEEEECCCCCcccccccEEEEecCCC
Q 004969          675 NMSILAAYTRPSSKSEIVKVNLLASTDHCD  704 (721)
Q Consensus       675 ~~~V~~v~fsP~~~~~~v~v~lLASgs~~~  704 (721)
                      ...|.+++.+|..       .+++||+...
T Consensus       589 ~DrvWaL~~~~~~-------~~~~tgg~Dg  611 (775)
T KOG0319|consen  589 NDRVWALSVSPLL-------DMFVTGGGDG  611 (775)
T ss_pred             cceeEEEeecCcc-------ceeEecCCCe
Confidence            8999999999999       8899888763

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.92  E-value=4.1e-23  Score=248.78  Aligned_cols=227  Identities=21%  Similarity=0.280  Sum_probs=188.3

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|.+++|+|.++.++++|+.||+|++||+.+++.+..+.  +|.+.|++++|+|.++.+|++|+.||+|++||+.++.. 
T Consensus       534 ~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~--~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~-  610 (793)
T PLN00181        534 KLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMK--EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS-  610 (793)
T ss_pred             ceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEec--CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE-
Confidence            578999998678999999999999999999998888876  89999999999977889999999999999999987543 


Q ss_pred             ccccccCcceeEeccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCc-EEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNS-MDELFLASGYSKNIALYDINSGR-RLQVFADMHKEHINVVKFSNHSPSIFATS  612 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp-~~~~lls~g~Dg~IrlWDl~s~~-~v~~l~~~h~~~V~sI~fsPdg~~lLaSg  612 (721)
                               ...+.+...|.++.|++ ++..+++|+.||.|++||+++++ .+..+.+ |...|.++.|. ++ ..++++
T Consensus       611 ---------~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~-h~~~V~~v~f~-~~-~~lvs~  678 (793)
T PLN00181        611 ---------IGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIG-HSKTVSYVRFV-DS-STLVSS  678 (793)
T ss_pred             ---------EEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecC-CCCCEEEEEEe-CC-CEEEEE
Confidence                     22333445789999954 57889999999999999999865 5666775 99999999997 45 689999


Q ss_pred             ECCCcEEEEECCCCC----ceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC-Ccc---------------
Q 004969          613 SFDQDVKLWDLRQKP----IQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG-DPF---------------  671 (721)
Q Consensus       613 s~DgtIrIWDlrs~~----~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g-~~l---------------  671 (721)
                      +.|++|++||++...    ..++..+.+|...+ .++|+|++.+|++|+.|+.|++|+... .+.               
T Consensus       679 s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~  758 (793)
T PLN00181        679 STDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLE  758 (793)
T ss_pred             ECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccc
Confidence            999999999998531    23456777887776 899999999999999999999999652 111               


Q ss_pred             -cccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          672 -RDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       672 -~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                       ..+...|.++.|+|++       ..|++|+..
T Consensus       759 ~~~~~~~V~~v~ws~~~-------~~lva~~~d  784 (793)
T PLN00181        759 VDDASQFISSVCWRGQS-------STLVAANST  784 (793)
T ss_pred             cCCCCcEEEEEEEcCCC-------CeEEEecCC
Confidence             1223468999999999       889988876

>PTZ00421 coronin; Provisional

Probab=99.92  E-value=8.2e-23  Score=231.38  Aligned_cols=220  Identities=15%  Similarity=0.136  Sum_probs=169.6

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe-------EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEE
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN-------IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYD  527 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~-------~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWD  527 (721)
                      .|++++|+|.++++|++|+.||+|++||+.++.       .+..+.  +|...|.+++|+|..+++|++|+.|++|+|||
T Consensus        77 ~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~--gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWD  154 (493)
T PTZ00421         77 PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ--GHTKKVGIVSFHPSAMNVLASAGADMVVNVWD  154 (493)
T ss_pred             CEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEec--CCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEE
Confidence            699999999778899999999999999997653       344554  89999999999965568999999999999999


Q ss_pred             cCCCCCcccccccCcceeEe-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCC-eEEEEEcCCC
Q 004969          528 IRHMPPSIRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEH-INVVKFSNHS  605 (721)
Q Consensus       528 i~~~~~~~~~~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~-V~sI~fsPdg  605 (721)
                      +.+++.          ...+ .|...|.+++|+|++..+++++.|++|++||+++++.+..+.+ |.+. +..+.|.+++
T Consensus       155 l~tg~~----------~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~-H~~~~~~~~~w~~~~  223 (493)
T PTZ00421        155 VERGKA----------VEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEA-HASAKSQRCLWAKRK  223 (493)
T ss_pred             CCCCeE----------EEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEec-CCCCcceEEEEcCCC
Confidence            988543          1222 3556799999999999999999999999999999999988886 7654 4567899987


Q ss_pred             CcEEEEEE----CCCcEEEEECCCCCceeEEEe--cCCCCeEEEEEecCCCEEEEEe-CCCcEEEEEcCC-Ccccc----
Q 004969          606 PSIFATSS----FDQDVKLWDLRQKPIQPCYTA--SSSKGNVMVCFSPDDHYLLGKG-SGTSMFVQSLRG-DPFRD----  673 (721)
Q Consensus       606 ~~lLaSgs----~DgtIrIWDlrs~~~~~~~~~--~~~~~~vsl~fSpdg~~Lasgs-~Dg~I~VWDl~g-~~l~~----  673 (721)
                       ..+++++    .|+.|++||+++... +....  ..........|++++.+|++|+ .|+.|++||+.. ..+..    
T Consensus       224 -~~ivt~G~s~s~Dr~VklWDlr~~~~-p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~  301 (493)
T PTZ00421        224 -DLIITLGCSKSQQRQIMLWDTRKMAS-PYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYS  301 (493)
T ss_pred             -CeEEEEecCCCCCCeEEEEeCCCCCC-ceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeecc
Confidence             4555543    489999999997532 22222  2222333678999999999887 599999999983 32221    


Q ss_pred             cccCeEEEEECCCCCc
Q 004969          674 FNMSILAAYTRPSSKS  689 (721)
Q Consensus       674 ~~~~V~~v~fsP~~~~  689 (721)
                      ...++.++.|.|...+
T Consensus       302 s~~~~~g~~~~pk~~~  317 (493)
T PTZ00421        302 SVEPHKGLCMMPKWSL  317 (493)
T ss_pred             CCCCCcceEecccccc
Confidence            1235667778776543

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.92  E-value=1.4e-23  Score=212.27  Aligned_cols=225  Identities=19%  Similarity=0.291  Sum_probs=183.2

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|..+.|+| +|..+|+|+.|..|.+|++. |.+.......+|.++|..+.|. .+++.++++|.|.+|+.||+++++..
T Consensus        49 eI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~-gdceN~~~lkgHsgAVM~l~~~-~d~s~i~S~gtDk~v~~wD~~tG~~~  125 (338)
T KOG0265|consen   49 EIYTIKFHP-DGSCFASGGSDRAIVLWNVY-GDCENFWVLKGHSGAVMELHGM-RDGSHILSCGTDKTVRGWDAETGKRI  125 (338)
T ss_pred             eEEEEEECC-CCCeEeecCCcceEEEEecc-ccccceeeeccccceeEeeeec-cCCCEEEEecCCceEEEEecccceee
Confidence            489999999 99999999999999999975 4444444444999999999998 89999999999999999999998762


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS  613 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs  613 (721)
                       ..+.+        |..-|++++-...|..++.++ .|+++++||+|+...++++.  .+..++++.|..++ ..+.+|+
T Consensus       126 -rk~k~--------h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~--~kyqltAv~f~d~s-~qv~sgg  193 (338)
T KOG0265|consen  126 -RKHKG--------HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE--NKYQLTAVGFKDTS-DQVISGG  193 (338)
T ss_pred             -ehhcc--------ccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc--cceeEEEEEecccc-cceeecc
Confidence             11222        223456676555666666554 68999999999999999887  57789999999888 7899999


Q ss_pred             CCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC----CCc-c-------cccccCeEE
Q 004969          614 FDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR----GDP-F-------RDFNMSILA  680 (721)
Q Consensus       614 ~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~----g~~-l-------~~~~~~V~~  680 (721)
                      -|+.|++||+|.+..  .+.+.+|...+ .+..+|+|.++.+-+.|.++++||++    +.+ +       ..|+.....
T Consensus       194 Idn~ikvWd~r~~d~--~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~  271 (338)
T KOG0265|consen  194 IDNDIKVWDLRKNDG--LYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLK  271 (338)
T ss_pred             ccCceeeeccccCcc--eEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcce
Confidence            999999999998854  78888999888 89999999999999999999999998    222 2       223456777


Q ss_pred             EEECCCCCcccccccEEEEecCC
Q 004969          681 AYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       681 v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      .+|+|++       ..+..|+..
T Consensus       272 cswsp~~-------~~i~ags~d  287 (338)
T KOG0265|consen  272 CSWSPNG-------TKITAGSAD  287 (338)
T ss_pred             eeccCCC-------Ccccccccc
Confidence            8999998       555555544

>PTZ00420 coronin; Provisional

Probab=99.92  E-value=1.2e-22  Score=231.74  Aligned_cols=221  Identities=12%  Similarity=0.153  Sum_probs=169.7

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe--------EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEE
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN--------IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLY  526 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~--------~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIW  526 (721)
                      .|.+++|+|.++.+|++|+.||+|+|||+.++.        .+..+.  +|...|.+++|+|.....+++|+.||+|++|
T Consensus        76 ~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~--gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIW  153 (568)
T PTZ00420         76 SILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK--GHKKKISIIDWNPMNYYIMCSSGFDSFVNIW  153 (568)
T ss_pred             CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEee--cCCCcEEEEEECCCCCeEEEEEeCCCeEEEE
Confidence            599999999658999999999999999997642        223344  8999999999995444567899999999999


Q ss_pred             EcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEE-----EEE
Q 004969          527 DIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINV-----VKF  601 (721)
Q Consensus       527 Di~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~s-----I~f  601 (721)
                      |+++++.          ...+.+...|.+++|+++|..+++++.|+.|++||+++++.+.++.+ |.+.+.+     ..|
T Consensus       154 Dl~tg~~----------~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~g-H~g~~~s~~v~~~~f  222 (568)
T PTZ00420        154 DIENEKR----------AFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHI-HDGGKNTKNIWIDGL  222 (568)
T ss_pred             ECCCCcE----------EEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEec-ccCCceeEEEEeeeE
Confidence            9998653          22334556799999999999999999999999999999999999986 8876543     335


Q ss_pred             cCCCCcEEEEEECCC----cEEEEECCC-CCceeEEEecCCCCeEEEEEe-cCCCEEEEEeCCCcEEEEEcCCCcc---c
Q 004969          602 SNHSPSIFATSSFDQ----DVKLWDLRQ-KPIQPCYTASSSKGNVMVCFS-PDDHYLLGKGSGTSMFVQSLRGDPF---R  672 (721)
Q Consensus       602 sPdg~~lLaSgs~Dg----tIrIWDlrs-~~~~~~~~~~~~~~~vsl~fS-pdg~~Lasgs~Dg~I~VWDl~g~~l---~  672 (721)
                      ++++ .++++++.|+    +|+|||+++ ..+.....+..+.+.+...|. ++|.++++|+.|+.|++|++....+   .
T Consensus       223 s~d~-~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~  301 (568)
T PTZ00420        223 GGDD-NYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVN  301 (568)
T ss_pred             cCCC-CEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeec
Confidence            5787 6777777664    799999995 434434445555555444444 4688999999999999999974332   2


Q ss_pred             c--cccCeEEEEECCCCCc
Q 004969          673 D--FNMSILAAYTRPSSKS  689 (721)
Q Consensus       673 ~--~~~~V~~v~fsP~~~~  689 (721)
                      .  +..++.+++|.|...+
T Consensus       302 ~~~s~~p~~g~~f~Pkr~~  320 (568)
T PTZ00420        302 EYKSCSPFRSFGFLPKQIC  320 (568)
T ss_pred             ccccCCCccceEEcccccc
Confidence            2  2356788999998763

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.92  E-value=5.1e-23  Score=203.39  Aligned_cols=217  Identities=17%  Similarity=0.229  Sum_probs=183.6

Q ss_pred             CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcce
Q 004969          465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGT  544 (721)
Q Consensus       465 dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~  544 (721)
                      +.-+|++++.|.+||+|...+|.+..+++  ...+.|..+... +++..|++|+.- .||+||++++.+        ...
T Consensus         9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiq--h~dsqVNrLeiT-pdk~~LAaa~~q-hvRlyD~~S~np--------~Pv   76 (311)
T KOG0315|consen    9 DPVILVSAGYDHTIRFWQALTGICSRTIQ--HPDSQVNRLEIT-PDKKDLAAAGNQ-HVRLYDLNSNNP--------NPV   76 (311)
T ss_pred             CceEEEeccCcceeeeeehhcCeEEEEEe--cCccceeeEEEc-CCcchhhhccCC-eeEEEEccCCCC--------Cce
Confidence            34789999999999999999999999998  345789999997 788888887765 899999999765        235


Q ss_pred             eEeccC-CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC
Q 004969          545 VTFDEF-DQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDL  623 (721)
Q Consensus       545 ~~~~~~-~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDl  623 (721)
                      .+|..+ ..|+++.|+.+|..+++||.||+++|||++.....+.+.  |..+|+++..+|+. .-|++|..+|.|++||+
T Consensus        77 ~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~--~~spVn~vvlhpnQ-teLis~dqsg~irvWDl  153 (311)
T KOG0315|consen   77 ATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ--HNSPVNTVVLHPNQ-TELISGDQSGNIRVWDL  153 (311)
T ss_pred             eEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc--CCCCcceEEecCCc-ceEEeecCCCcEEEEEc
Confidence            556544 679999999999999999999999999999988778887  88999999999998 68999999999999999


Q ss_pred             CCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCC----------cccccccCeEEEEECCCCCccccc
Q 004969          624 RQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGD----------PFRDFNMSILAAYTRPSSKSEIVK  693 (721)
Q Consensus       624 rs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~----------~l~~~~~~V~~v~fsP~~~~~~v~  693 (721)
                      +...+.............+++..|||.+++++...|..++|++-++          +++.|...+....+||++      
T Consensus       154 ~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~------  227 (311)
T KOG0315|consen  154 GENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDV------  227 (311)
T ss_pred             cCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCC------
Confidence            9875543333333333338999999999999999999999998643          255567889999999999      


Q ss_pred             ccEEEEecCC
Q 004969          694 VNLLASTDHC  703 (721)
Q Consensus       694 v~lLASgs~~  703 (721)
                       ..||++|..
T Consensus       228 -k~lat~ssd  236 (311)
T KOG0315|consen  228 -KYLATCSSD  236 (311)
T ss_pred             -cEEEeecCC
Confidence             999999987

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.92  E-value=1e-22  Score=218.28  Aligned_cols=242  Identities=17%  Similarity=0.205  Sum_probs=193.2

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEee-cCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIP-SFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~-~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~  533 (721)
                      -|.|+.|+| ||.++++.+.||+|.+||-.+|+.+..+. ..+|.+.|.+++|+ |++..++|+|.|.+++|||+.+...
T Consensus       192 FV~~VRysP-DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWs-PDs~~~~T~SaDkt~KIWdVs~~sl  269 (603)
T KOG0318|consen  192 FVNCVRYSP-DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWS-PDSTQFLTVSADKTIKIWDVSTNSL  269 (603)
T ss_pred             ceeeEEECC-CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEEC-CCCceEEEecCCceEEEEEeeccce
Confidence            599999999 89999999999999999999999999887 46899999999998 7999999999999999999997643


Q ss_pred             ccccc-------------c---------------------cCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q 004969          534 SIRGM-------------H---------------------YGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDI  579 (721)
Q Consensus       534 ~~~~~-------------~---------------------~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl  579 (721)
                      .....             .                     .....+...|...|+++..++++.+|++++.||.|.-||.
T Consensus       270 v~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~  349 (603)
T KOG0318|consen  270 VSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDS  349 (603)
T ss_pred             EEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEec
Confidence            11100             0                     0111122347778999999999999999999999999998


Q ss_pred             CCCcEEE-----------EEc-----------------------------------------------------------
Q 004969          580 NSGRRLQ-----------VFA-----------------------------------------------------------  589 (721)
Q Consensus       580 ~s~~~v~-----------~l~-----------------------------------------------------------  589 (721)
                      .+|..-+           .+.                                                           
T Consensus       350 ~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv  429 (603)
T KOG0318|consen  350 GSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIV  429 (603)
T ss_pred             CCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEE
Confidence            7653211           000                                                           


Q ss_pred             ---c-------ccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCC
Q 004969          590 ---D-------MHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSG  658 (721)
Q Consensus       590 ---~-------~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~D  658 (721)
                         .       .-.-...+++++|++ ..++.|+.|+.|+||.+.............|.+.+ .++||||+.||+++...
T Consensus       430 ~l~~~~~~~~~~~~y~~s~vAv~~~~-~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~  508 (603)
T KOG0318|consen  430 LLQDQTKVSSIPIGYESSAVAVSPDG-SEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDAS  508 (603)
T ss_pred             EEecCCcceeeccccccceEEEcCCC-CEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccC
Confidence               0       001124578889988 79999999999999999986655554555566666 89999999999999999


Q ss_pred             CcEEEEEcCCCccc----c-cccCeEEEEECCCCCcccccccEEEEecCCCcc
Q 004969          659 TSMFVQSLRGDPFR----D-FNMSILAAYTRPSSKSEIVKVNLLASTDHCDKE  706 (721)
Q Consensus       659 g~I~VWDl~g~~l~----~-~~~~V~~v~fsP~~~~~~v~v~lLASgs~~~ke  706 (721)
                      +.+.+||+..+..+    . |...|.+++|+|+.       .++||||..+-.
T Consensus       509 rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n-------~~vATGSlDt~V  554 (603)
T KOG0318|consen  509 RKVVLYDVASREVKTNRWAFHTAKINCVAWSPNN-------KLVATGSLDTNV  554 (603)
T ss_pred             CcEEEEEcccCceecceeeeeeeeEEEEEeCCCc-------eEEEeccccceE
Confidence            99999999854322    2 46789999999999       899999998543

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.92  E-value=3.3e-22  Score=204.09  Aligned_cols=224  Identities=25%  Similarity=0.373  Sum_probs=186.2

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|++++|+| +++++++|+.||.|++|++.+++....+.  +|...+..+.|+ ++++.+++++.||.|++||+.+++..
T Consensus        11 ~i~~~~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~--~~~~~i~~~~~~-~~~~~l~~~~~~~~i~i~~~~~~~~~   86 (289)
T cd00200          11 GVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLK--GHTGPVRDVAAS-ADGTYLASGSSDKTIRLWDLETGECV   86 (289)
T ss_pred             CEEEEEEcC-CCCEEEEeecCcEEEEEEeeCCCcEEEEe--cCCcceeEEEEC-CCCCEEEEEcCCCeEEEEEcCcccce
Confidence            599999999 89999999999999999999888777666  788889999998 56789999999999999999875331


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF  614 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~  614 (721)
                               .....+...+.++.|++++..+++++.|+.+++||+++++....+.. |...+.+++|+|++ .++++++.
T Consensus        87 ---------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~-~~l~~~~~  155 (289)
T cd00200          87 ---------RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG-HTDWVNSVAFSPDG-TFVASSSQ  155 (289)
T ss_pred             ---------EEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEecc-CCCcEEEEEEcCcC-CEEEEEcC
Confidence                     11113445799999999877777777799999999999998888886 99999999999997 78888888


Q ss_pred             CCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC-CCc---ccccccCeEEEEECCCCCc
Q 004969          615 DQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR-GDP---FRDFNMSILAAYTRPSSKS  689 (721)
Q Consensus       615 DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~---l~~~~~~V~~v~fsP~~~~  689 (721)
                      |+.|++||+++++.  ...+..+...+ ++.|+|+++.+++++.++.+++||++ +..   +..+...+.++.|+|++  
T Consensus       156 ~~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--  231 (289)
T cd00200         156 DGTIKLWDLRTGKC--VATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDG--  231 (289)
T ss_pred             CCcEEEEEcccccc--ceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCC--
Confidence            99999999997754  33444565455 89999999999999999999999997 333   33456689999999997  


Q ss_pred             ccccccEEEEecC
Q 004969          690 EIVKVNLLASTDH  702 (721)
Q Consensus       690 ~~v~v~lLASgs~  702 (721)
                           .++++++.
T Consensus       232 -----~~~~~~~~  239 (289)
T cd00200         232 -----YLLASGSE  239 (289)
T ss_pred             -----cEEEEEcC
Confidence                 77777763

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1.9e-23  Score=234.09  Aligned_cols=228  Identities=14%  Similarity=0.256  Sum_probs=199.7

Q ss_pred             cCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969          454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~  533 (721)
                      .+|..++||| ...+++++-..|.|++||..-+.++..+.  +|.++|.+++|+ +...+++|||+|-.|+||+..+.++
T Consensus        10 sRvKglsFHP-~rPwILtslHsG~IQlWDYRM~tli~rFd--eHdGpVRgv~FH-~~qplFVSGGDDykIkVWnYk~rrc   85 (1202)
T KOG0292|consen   10 SRVKGLSFHP-KRPWILTSLHSGVIQLWDYRMGTLIDRFD--EHDGPVRGVDFH-PTQPLFVSGGDDYKIKVWNYKTRRC   85 (1202)
T ss_pred             ccccceecCC-CCCEEEEeecCceeeeehhhhhhHHhhhh--ccCCccceeeec-CCCCeEEecCCccEEEEEeccccee
Confidence            4799999999 88999999999999999999999998887  899999999999 6888999999999999999998766


Q ss_pred             cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969          534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS  613 (721)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs  613 (721)
                      ...         -..|-+.|..+.||+.-++|+++++|.+|+||+..+++++..+.| |...|.|.+|+|.. .+++++|
T Consensus        86 lft---------L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltG-HnHYVMcAqFhptE-DlIVSaS  154 (1202)
T KOG0292|consen   86 LFT---------LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTG-HNHYVMCAQFHPTE-DLIVSAS  154 (1202)
T ss_pred             hhh---------hccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEec-CceEEEeeccCCcc-ceEEEec
Confidence            321         224557789999999999999999999999999999999999998 99999999999987 6999999


Q ss_pred             CCCcEEEEECCCCC---------------------------ceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEE
Q 004969          614 FDQDVKLWDLRQKP---------------------------IQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQS  665 (721)
Q Consensus       614 ~DgtIrIWDlrs~~---------------------------~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWD  665 (721)
                      -|.+|||||+..-+                           ....+.+.||...+ -++|+|.-..+++|+.|..|++|.
T Consensus       155 LDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWr  234 (1202)
T KOG0292|consen  155 LDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWR  234 (1202)
T ss_pred             ccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEE
Confidence            99999999985310                           11123456776666 689999999999999999999999


Q ss_pred             cCC------CcccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          666 LRG------DPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       666 l~g------~~l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      ...      +..++|...|.++-|||..       ++|.|.|..
T Consensus       235 mnetKaWEvDtcrgH~nnVssvlfhp~q-------~lIlSnsED  271 (1202)
T KOG0292|consen  235 MNETKAWEVDTCRGHYNNVSSVLFHPHQ-------DLILSNSED  271 (1202)
T ss_pred             eccccceeehhhhcccCCcceEEecCcc-------ceeEecCCC
Confidence            862      4588999999999999998       888888876

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=2.9e-23  Score=232.50  Aligned_cols=227  Identities=19%  Similarity=0.323  Sum_probs=193.5

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      +|+.+.||| .+.++++|++|-.|+||+..+.+++.++.  ||.+.|..+.|+ +.-.+++|+|+|.||+||+..++++ 
T Consensus        53 pVRgv~FH~-~qplFVSGGDDykIkVWnYk~rrclftL~--GHlDYVRt~~FH-heyPWIlSASDDQTIrIWNwqsr~~-  127 (1202)
T KOG0292|consen   53 PVRGVDFHP-TQPLFVSGGDDYKIKVWNYKTRRCLFTLL--GHLDYVRTVFFH-HEYPWILSASDDQTIRIWNWQSRKC-  127 (1202)
T ss_pred             ccceeeecC-CCCeEEecCCccEEEEEecccceehhhhc--cccceeEEeecc-CCCceEEEccCCCeEEEEeccCCce-
Confidence            699999999 89999999999999999999999998887  999999999998 6778999999999999999998765 


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC--------C-------------------c-EE-
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINS--------G-------------------R-RL-  585 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s--------~-------------------~-~v-  585 (721)
                      +..++        .|...|+|..|||..+.+++++-|.+||+||+..        +                   . .+ 
T Consensus       128 iavlt--------GHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK  199 (1202)
T KOG0292|consen  128 IAVLT--------GHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVK  199 (1202)
T ss_pred             EEEEe--------cCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeee
Confidence            22222        3445689999999999999999999999999862        1                   0 11 


Q ss_pred             EEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEE
Q 004969          586 QVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQ  664 (721)
Q Consensus       586 ~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VW  664 (721)
                      +.+.| |...|+-++|+|.- -++++|++|+.|++|.+...+.-.+-+..+|.+.+ ++-|+|....+++.|.|++|+||
T Consensus       200 ~VLEG-HDRGVNwaAfhpTl-pliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVw  277 (1202)
T KOG0292|consen  200 HVLEG-HDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVW  277 (1202)
T ss_pred             eeecc-cccccceEEecCCc-ceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEE
Confidence            23444 99999999999998 59999999999999999876555566778999988 89999999999999999999999


Q ss_pred             EcCCCc----ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          665 SLRGDP----FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       665 Dl~g~~----l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      |+..++    ++.-+..-+.++-||..       +++|.|.-.
T Consensus       278 Dm~kRt~v~tfrrendRFW~laahP~l-------NLfAAgHDs  313 (1202)
T KOG0292|consen  278 DMTKRTSVQTFRRENDRFWILAAHPEL-------NLFAAGHDS  313 (1202)
T ss_pred             ecccccceeeeeccCCeEEEEEecCCc-------ceeeeecCC
Confidence            998443    33336678889999999       999988765

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.91  E-value=6.3e-23  Score=217.61  Aligned_cols=227  Identities=18%  Similarity=0.261  Sum_probs=185.2

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCC--CeEEE------Ee----ecCCCCCCeEEEEEeeCCCCEEEEEeCCCe
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHEN--ENIVS------YI----PSFGAMNSVLGLCWLKKYPSKLIAGSDNGS  522 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~t--g~~i~------~l----~~~~H~~~V~sl~fsp~d~~~LaSgs~DGt  522 (721)
                      .|.+.+|+|....++++|+.|-+.++|++..  .....      .+    +.......|++++|+ .+|+.|++|+.||.
T Consensus       180 ~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn-~~G~~LatG~~~G~  258 (524)
T KOG0273|consen  180 EVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWN-NDGTLLATGSEDGE  258 (524)
T ss_pred             ceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEec-CCCCeEEEeecCcE
Confidence            5899999997767999999999999999864  11111      11    111224679999998 89999999999999


Q ss_pred             EEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcE------------------
Q 004969          523 LKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRR------------------  584 (721)
Q Consensus       523 VrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~------------------  584 (721)
                      +++|+......          ..--.|.++|.++.|+..|.+|++++.|+++.+||..+|+.                  
T Consensus       259 ~riw~~~G~l~----------~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~  328 (524)
T KOG0273|consen  259 ARIWNKDGNLI----------STLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS  328 (524)
T ss_pred             EEEEecCchhh----------hhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec
Confidence            99999987432          11224678999999999999999999999999999866532                  


Q ss_pred             -----------------------EEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE
Q 004969          585 -----------------------LQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV  641 (721)
Q Consensus       585 -----------------------v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v  641 (721)
                                             +.++.+ |.+.|.++.|+|.| .+|+++|.|++++||......+  ...+..|...+
T Consensus       329 ~~~F~ts~td~~i~V~kv~~~~P~~t~~G-H~g~V~alk~n~tg-~LLaS~SdD~TlkiWs~~~~~~--~~~l~~Hskei  404 (524)
T KOG0273|consen  329 NDEFATSSTDGCIHVCKVGEDRPVKTFIG-HHGEVNALKWNPTG-SLLASCSDDGTLKIWSMGQSNS--VHDLQAHSKEI  404 (524)
T ss_pred             CceEeecCCCceEEEEEecCCCcceeeec-ccCceEEEEECCCC-ceEEEecCCCeeEeeecCCCcc--hhhhhhhccce
Confidence                                   234556 99999999999999 8999999999999999887644  56677787666


Q ss_pred             -EEEEecCC---------CEEEEEeCCCcEEEEEcC-CCc---ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          642 -MVCFSPDD---------HYLLGKGSGTSMFVQSLR-GDP---FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       642 -sl~fSpdg---------~~Lasgs~Dg~I~VWDl~-g~~---l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                       .+.|+|+|         ..+++++.|++|++||+. |.+   +..|+.+|.+++|+|++       ..+|+|+..
T Consensus       405 ~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g-------~ylAsGs~d  473 (524)
T KOG0273|consen  405 YTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNG-------RYLASGSLD  473 (524)
T ss_pred             eeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCC-------cEEEecCCC
Confidence             89999865         478999999999999987 544   55668899999999999       999999987

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.91  E-value=3.6e-22  Score=240.65  Aligned_cols=227  Identities=18%  Similarity=0.228  Sum_probs=183.0

Q ss_pred             ccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCC----e----EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEE
Q 004969          453 SFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENE----N----IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLK  524 (721)
Q Consensus       453 ~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg----~----~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVr  524 (721)
                      ...|.+++|+| +++++|+|+.||.|+||+....    .    ....+   .+...|.+++|++..+.+|++++.||+|+
T Consensus       483 ~~~V~~i~fs~-dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~---~~~~~v~~l~~~~~~~~~las~~~Dg~v~  558 (793)
T PLN00181        483 SNLVCAIGFDR-DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL---ASRSKLSGICWNSYIKSQVASSNFEGVVQ  558 (793)
T ss_pred             CCcEEEEEECC-CCCEEEEEeCCCEEEEEECCcccccccccccceEEe---cccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence            34699999999 9999999999999999997532    1    11222   33468999999977789999999999999


Q ss_pred             EEEcCCCCCcccccccCcceeEeccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcC
Q 004969          525 LYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNS-MDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSN  603 (721)
Q Consensus       525 IWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp-~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsP  603 (721)
                      +||+.+++..         .....|...|++++|+| ++..+++|+.||+|++||++++..+..+.  +...|.++.|++
T Consensus       559 lWd~~~~~~~---------~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~--~~~~v~~v~~~~  627 (793)
T PLN00181        559 VWDVARSQLV---------TEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK--TKANICCVQFPS  627 (793)
T ss_pred             EEECCCCeEE---------EEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe--cCCCeEEEEEeC
Confidence            9999875431         11124567899999997 56789999999999999999999988887  446899999966


Q ss_pred             CCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC-------C---ccc
Q 004969          604 HSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG-------D---PFR  672 (721)
Q Consensus       604 dg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g-------~---~l~  672 (721)
                      ..+.++++|+.||.|++||+++.. .+...+.+|...+ .+.|. ++.++++++.|+.|++||++.       .   .+.
T Consensus       628 ~~g~~latgs~dg~I~iwD~~~~~-~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~  705 (793)
T PLN00181        628 ESGRSLAFGSADHKVYYYDLRNPK-LPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFM  705 (793)
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCC-ccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEc
Confidence            544899999999999999998754 2345566777777 78997 788999999999999999862       2   244


Q ss_pred             ccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          673 DFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       673 ~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      +|...+..+.|+|++       .+||+|+..
T Consensus       706 gh~~~i~~v~~s~~~-------~~lasgs~D  729 (793)
T PLN00181        706 GHTNVKNFVGLSVSD-------GYIATGSET  729 (793)
T ss_pred             CCCCCeeEEEEcCCC-------CEEEEEeCC
Confidence            566678899999999       899999865

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.90  E-value=1.1e-21  Score=200.16  Aligned_cols=224  Identities=23%  Similarity=0.289  Sum_probs=186.1

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .+.++.|+| +++++++++.||.|++|++.+++....+.  .|...|.++.|+ +++.++++++.||.|++||+.+++. 
T Consensus        53 ~i~~~~~~~-~~~~l~~~~~~~~i~i~~~~~~~~~~~~~--~~~~~i~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~-  127 (289)
T cd00200          53 PVRDVAASA-DGTYLASGSSDKTIRLWDLETGECVRTLT--GHTSYVSSVAFS-PDGRILSSSSRDKTIKVWDVETGKC-  127 (289)
T ss_pred             ceeEEEECC-CCCEEEEEcCCCeEEEEEcCcccceEEEe--ccCCcEEEEEEc-CCCCEEEEecCCCeEEEEECCCcEE-
Confidence            467999999 77899999999999999999887777776  788899999998 5577888888899999999986443 


Q ss_pred             ccccccCcceeEe-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969          535 IRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS  613 (721)
Q Consensus       535 ~~~~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs  613 (721)
                               ...+ .+...+.+++|+|++..+++++.|+.|++||+++++.+..+.. |...+.++.|+|++ ..+++++
T Consensus       128 ---------~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~-~~l~~~~  196 (289)
T cd00200         128 ---------LTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTG-HTGEVNSVAFSPDG-EKLLSSS  196 (289)
T ss_pred             ---------EEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEec-CccccceEEECCCc-CEEEEec
Confidence                     1122 3556799999999877777777799999999999998888886 88899999999998 7888888


Q ss_pred             CCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC-CCc---ccccccCeEEEEECCCCC
Q 004969          614 FDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR-GDP---FRDFNMSILAAYTRPSSK  688 (721)
Q Consensus       614 ~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~---l~~~~~~V~~v~fsP~~~  688 (721)
                      .|+.|++||+++++.  ...+..+...+ +++|+|++.++++++.+|.+++|++. +.+   +..+...+.++.|+|++ 
T Consensus       197 ~~~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-  273 (289)
T cd00200         197 SDGTIKLWDLSTGKC--LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDG-  273 (289)
T ss_pred             CCCcEEEEECCCCce--ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCC-
Confidence            899999999998644  44444555455 89999999999988889999999997 333   34556789999999998 


Q ss_pred             cccccccEEEEecCC
Q 004969          689 SEIVKVNLLASTDHC  703 (721)
Q Consensus       689 ~~~v~v~lLASgs~~  703 (721)
                            +.+++++..
T Consensus       274 ------~~l~~~~~d  282 (289)
T cd00200         274 ------KRLASGSAD  282 (289)
T ss_pred             ------CEEEEecCC
Confidence                  888888765

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.90  E-value=9.5e-24  Score=216.15  Aligned_cols=207  Identities=14%  Similarity=0.242  Sum_probs=171.6

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|.|+.|..   ..+++|+.|.+|+|||+++|+++.++-  +|..+|..+.|+   +.+++++|.|.++.+||+......
T Consensus       239 SVLCLqyd~---rviisGSSDsTvrvWDv~tge~l~tli--hHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~i  310 (499)
T KOG0281|consen  239 SVLCLQYDE---RVIVSGSSDSTVRVWDVNTGEPLNTLI--HHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDI  310 (499)
T ss_pred             cEEeeeccc---eEEEecCCCceEEEEeccCCchhhHHh--hhcceeEEEEEe---CCEEEEecCCceeEEEeccCchHH
Confidence            688999976   799999999999999999999998876  888999999986   578999999999999999874421


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF  614 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~  614 (721)
                       .     ...+-..|...|+.+.|  ++.++++++.|.+|++|++.+++.++++.+ |...|.|+++.  | +++++|+.
T Consensus       311 -t-----~rrVLvGHrAaVNvVdf--d~kyIVsASgDRTikvW~~st~efvRtl~g-HkRGIAClQYr--~-rlvVSGSS  378 (499)
T KOG0281|consen  311 -T-----LRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTLNG-HKRGIACLQYR--D-RLVVSGSS  378 (499)
T ss_pred             -H-----HHHHHhhhhhheeeecc--ccceEEEecCCceEEEEeccceeeehhhhc-ccccceehhcc--C-eEEEecCC
Confidence             0     11122345567899998  567999999999999999999999999997 99999999985  4 79999999


Q ss_pred             CCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCC--c-----------ccccccCeEE
Q 004969          615 DQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGD--P-----------FRDFNMSILA  680 (721)
Q Consensus       615 DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~--~-----------l~~~~~~V~~  680 (721)
                      |.+||+||+..|.+  +..+.||..-+ ++.|  |.+.+++|+.||+|+|||+...  +           +..|.+.|..
T Consensus       379 DntIRlwdi~~G~c--LRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFr  454 (499)
T KOG0281|consen  379 DNTIRLWDIECGAC--LRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFR  454 (499)
T ss_pred             CceEEEEeccccHH--HHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEE
Confidence            99999999999976  45567888888 8888  4788999999999999998721  1           2345667888


Q ss_pred             EEECC
Q 004969          681 AYTRP  685 (721)
Q Consensus       681 v~fsP  685 (721)
                      +.|..
T Consensus       455 LQFD~  459 (499)
T KOG0281|consen  455 LQFDE  459 (499)
T ss_pred             Eeecc
Confidence            87743

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.90  E-value=1.7e-22  Score=203.65  Aligned_cols=196  Identities=17%  Similarity=0.199  Sum_probs=173.6

Q ss_pred             ccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969          453 SFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP  532 (721)
Q Consensus       453 ~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~  532 (721)
                      ..++.|+.|-+ | ..|++|+.|.+..+||+++|+.+..+.  ||.+.|.+++++|.+++.+++|+.|++.++||++.+.
T Consensus       145 tgylScC~f~d-D-~~ilT~SGD~TCalWDie~g~~~~~f~--GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~  220 (343)
T KOG0286|consen  145 TGYLSCCRFLD-D-NHILTGSGDMTCALWDIETGQQTQVFH--GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ  220 (343)
T ss_pred             cceeEEEEEcC-C-CceEecCCCceEEEEEcccceEEEEec--CCcccEEEEecCCCCCCeEEecccccceeeeeccCcc
Confidence            34789999988 4 678999999999999999999999988  9999999999986699999999999999999999975


Q ss_pred             CcccccccCcceeEe-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcc-ccCCCeEEEEEcCCCCcEEE
Q 004969          533 PSIRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD-MHKEHINVVKFSNHSPSIFA  610 (721)
Q Consensus       533 ~~~~~~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~-~h~~~V~sI~fsPdg~~lLa  610 (721)
                      .          ...| .|...|++|.|+|+|.-|++|++|+++|+||+|..+.+..+.. .-..+|++++|+..| ++|.
T Consensus       221 c----------~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SG-RlLf  289 (343)
T KOG0286|consen  221 C----------VQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSG-RLLF  289 (343)
T ss_pred             e----------eEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccc-cEEE
Confidence            4          2233 4557799999999999999999999999999999999988873 124589999999999 8999


Q ss_pred             EEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEE
Q 004969          611 TSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQS  665 (721)
Q Consensus       611 Sgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWD  665 (721)
                      +|..|.++.+||.-.++  .+-.+.+|...+ ++..+|||.-+++|+.|..++||.
T Consensus       290 agy~d~~c~vWDtlk~e--~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  290 AGYDDFTCNVWDTLKGE--RVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             eeecCCceeEeeccccc--eEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            99999999999998774  466677999888 899999999999999999999994

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.90  E-value=2.9e-22  Score=222.11  Aligned_cols=216  Identities=17%  Similarity=0.306  Sum_probs=188.6

Q ss_pred             CeEEEEEeCCCCCEEEEEECC-CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLD-GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~D-G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~  533 (721)
                      +|..++|+. .|++||.|+.. |.+.||++++...+...+  +|...+++++++ +++.+++||+.||.|+|||...+-+
T Consensus       309 ~I~t~~~N~-tGDWiA~g~~klgQLlVweWqsEsYVlKQQ--gH~~~i~~l~YS-pDgq~iaTG~eDgKVKvWn~~SgfC  384 (893)
T KOG0291|consen  309 KILTVSFNS-TGDWIAFGCSKLGQLLVWEWQSESYVLKQQ--GHSDRITSLAYS-PDGQLIATGAEDGKVKVWNTQSGFC  384 (893)
T ss_pred             eeeEEEecc-cCCEEEEcCCccceEEEEEeeccceeeecc--ccccceeeEEEC-CCCcEEEeccCCCcEEEEeccCceE
Confidence            588899999 89999998875 899999999887776655  999999999998 7999999999999999999998654


Q ss_pred             cccccccCcceeEec-cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969          534 SIRGMHYGAGTVTFD-EFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS  612 (721)
Q Consensus       534 ~~~~~~~~~~~~~~~-~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg  612 (721)
                                .++|. |...|+.+.|+..++.+++++-||+||.||+...+..++|.....-...+++..|.| .++..|
T Consensus       385 ----------~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sG-elV~AG  453 (893)
T KOG0291|consen  385 ----------FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSG-ELVCAG  453 (893)
T ss_pred             ----------EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCC-CEEEee
Confidence                      56664 557799999999999999999999999999999999999997566778899999999 688888


Q ss_pred             ECCCc-EEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCC--ccc--ccccCeEEEEECCC
Q 004969          613 SFDQD-VKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGD--PFR--DFNMSILAAYTRPS  686 (721)
Q Consensus       613 s~Dgt-IrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~--~l~--~~~~~V~~v~fsP~  686 (721)
                      +.|.. |.+|++.+|+.  +-.+.||.+++ +++|+|+|..|++|+.|.+|++||+-+.  ...  .+...+..++|+|+
T Consensus       454 ~~d~F~IfvWS~qTGql--lDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPd  531 (893)
T KOG0291|consen  454 AQDSFEIFVWSVQTGQL--LDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPD  531 (893)
T ss_pred             ccceEEEEEEEeecCee--eehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCC
Confidence            88764 99999999955  56678999999 7999999999999999999999998643  333  33568999999999


Q ss_pred             C
Q 004969          687 S  687 (721)
Q Consensus       687 ~  687 (721)
                      |
T Consensus       532 G  532 (893)
T KOG0291|consen  532 G  532 (893)
T ss_pred             C
Confidence            9

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=1.1e-22  Score=201.66  Aligned_cols=230  Identities=22%  Similarity=0.384  Sum_probs=184.1

Q ss_pred             EEEEEeCCCCCEEEEEE-------CCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcC
Q 004969          457 RQFEYHPSISCLMVFGT-------LDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIR  529 (721)
Q Consensus       457 ~~lafsP~dg~~LasGs-------~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~  529 (721)
                      .++.|||.-.++||++.       ..|++.|.++..++-+.......-.+.+.+|+|++...+.+++++.||++++||..
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~   91 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT   91 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence            57889997667776654       36899999997665555555445678999999998889999999999999999965


Q ss_pred             CCCCcccccccCcceeEeccCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcE
Q 004969          530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD-ELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSI  608 (721)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~-~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~l  608 (721)
                      .....+...        ..|...|.++.|++.. ..+++++.|++|++||...++.+++|.+ |...|...+|+|..+++
T Consensus        92 ~~s~Pi~~~--------kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~g-h~~~Iy~a~~sp~~~nl  162 (311)
T KOG0277|consen   92 MPSKPIHKF--------KEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNG-HNSCIYQAAFSPHIPNL  162 (311)
T ss_pred             CCCcchhHH--------HhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecC-CccEEEEEecCCCCCCe
Confidence            543322222        1355678999998865 4566677899999999999999999998 99999999999999999


Q ss_pred             EEEEECCCcEEEEECCCCCceeEEEecCCC-CeEEEEEec-CCCEEEEEeCCCcEEEEEcCC--Cc---ccccccCeEEE
Q 004969          609 FATSSFDQDVKLWDLRQKPIQPCYTASSSK-GNVMVCFSP-DDHYLLGKGSGTSMFVQSLRG--DP---FRDFNMSILAA  681 (721)
Q Consensus       609 LaSgs~DgtIrIWDlrs~~~~~~~~~~~~~-~~vsl~fSp-dg~~Lasgs~Dg~I~VWDl~g--~~---l~~~~~~V~~v  681 (721)
                      ++++|.|+++++||++....  ...++.|. .+.++.|+. +...++||+.|+.|++||++.  .|   +.+|+..|..+
T Consensus       163 fas~Sgd~~l~lwdvr~~gk--~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkv  240 (311)
T KOG0277|consen  163 FASASGDGTLRLWDVRSPGK--FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKV  240 (311)
T ss_pred             EEEccCCceEEEEEecCCCc--eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEE
Confidence            99999999999999997532  22255666 444999998 667889999999999999982  22   56677899999


Q ss_pred             EECCCCCcccccccEEEEecCC
Q 004969          682 YTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       682 ~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      .|+|...      .+|||++-.
T Consensus       241 k~Sph~~------~lLaSasYD  256 (311)
T KOG0277|consen  241 KFSPHHA------SLLASASYD  256 (311)
T ss_pred             ecCcchh------hHhhhcccc
Confidence            9999874      788888764

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.90  E-value=1.3e-22  Score=201.83  Aligned_cols=237  Identities=20%  Similarity=0.237  Sum_probs=197.0

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|.+++|+. +|..+++|+.|+++.+|+++.++........+|.+.|-.++|.|+.++.+++++.|.+|++||++.+++.
T Consensus        22 ~v~Sv~wn~-~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~  100 (313)
T KOG1407|consen   22 KVHSVAWNC-DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCT  100 (313)
T ss_pred             cceEEEEcc-cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEE
Confidence            588999999 9999999999999999999988777777778999999999999999999999999999999999988764


Q ss_pred             ccccccCc-------------------------------ceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 004969          535 IRGMHYGA-------------------------------GTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR  583 (721)
Q Consensus       535 ~~~~~~~~-------------------------------~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~  583 (721)
                      ........                               .....+....+..++|+-+++.|+....-|+|.|....+-+
T Consensus       101 ~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLk  180 (313)
T KOG1407|consen  101 ARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLK  180 (313)
T ss_pred             EEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccc
Confidence            32221100                               00111122346778888777888887778899998888889


Q ss_pred             EEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEE
Q 004969          584 RLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMF  662 (721)
Q Consensus       584 ~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~  662 (721)
                      +++.++. |.....||.|+|+| ++||+|+.|..+-+||+..--|  ...+..+.-++ .++||.||++||+|+.|..|-
T Consensus       181 pv~si~A-H~snCicI~f~p~G-ryfA~GsADAlvSLWD~~ELiC--~R~isRldwpVRTlSFS~dg~~lASaSEDh~ID  256 (313)
T KOG1407|consen  181 PVQSIKA-HPSNCICIEFDPDG-RYFATGSADALVSLWDVDELIC--ERCISRLDWPVRTLSFSHDGRMLASASEDHFID  256 (313)
T ss_pred             ccccccc-CCcceEEEEECCCC-ceEeeccccceeeccChhHhhh--heeeccccCceEEEEeccCcceeeccCccceEE
Confidence            9999996 99999999999999 8999999999999999987644  44555666677 899999999999999999998


Q ss_pred             EEEcC-CCccccc--ccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          663 VQSLR-GDPFRDF--NMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       663 VWDl~-g~~l~~~--~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      |=++. |+.+...  .++...++|||..       ++||-+...
T Consensus       257 IA~vetGd~~~eI~~~~~t~tVAWHPk~-------~LLAyA~dd  293 (313)
T KOG1407|consen  257 IAEVETGDRVWEIPCEGPTFTVAWHPKR-------PLLAYACDD  293 (313)
T ss_pred             eEecccCCeEEEeeccCCceeEEecCCC-------ceeeEEecC
Confidence            87776 6655433  6789999999999       999998877

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.1e-21  Score=196.20  Aligned_cols=226  Identities=17%  Similarity=0.243  Sum_probs=184.0

Q ss_pred             CccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe--EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcC
Q 004969          452 RSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN--IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIR  529 (721)
Q Consensus       452 ~~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~--~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~  529 (721)
                      +...|++++|+| .|++||+|+.|.++.||.-..+.  ++.++.  ||.+.|.+++|+ .++++||+|+.|+.|=||.+.
T Consensus        60 hkrsVRsvAwsp-~g~~La~aSFD~t~~Iw~k~~~efecv~~lE--GHEnEVK~Vaws-~sG~~LATCSRDKSVWiWe~d  135 (312)
T KOG0645|consen   60 HKRSVRSVAWSP-HGRYLASASFDATVVIWKKEDGEFECVATLE--GHENEVKCVAWS-ASGNYLATCSRDKSVWIWEID  135 (312)
T ss_pred             chheeeeeeecC-CCcEEEEeeccceEEEeecCCCceeEEeeee--ccccceeEEEEc-CCCCEEEEeeCCCeEEEEEec
Confidence            445799999999 99999999999999999987664  555565  999999999998 899999999999999999998


Q ss_pred             CCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC---CCcEEEEEccccCCCeEEEEEcCCCC
Q 004969          530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDIN---SGRRLQVFADMHKEHINVVKFSNHSP  606 (721)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~---s~~~v~~l~~~h~~~V~sI~fsPdg~  606 (721)
                      .+..-      ....+.-.|...|-.+.|||..+.+++++.|.+|++|+-.   ...+++++.+ |...|.+++|+|.| 
T Consensus       136 eddEf------ec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g-~~~TVW~~~F~~~G-  207 (312)
T KOG0645|consen  136 EDDEF------ECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDG-HENTVWSLAFDNIG-  207 (312)
T ss_pred             CCCcE------EEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecC-ccceEEEEEecCCC-
Confidence            64431      0112223455678999999999999999999999999876   3467889987 99999999999999 


Q ss_pred             cEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCc-----------cccc
Q 004969          607 SIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDP-----------FRDF  674 (721)
Q Consensus       607 ~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~-----------l~~~  674 (721)
                      ..|++++.|++++||...+.-     . ..|...+ .+.|.  ...|++++.|+.|++|.....+           ...|
T Consensus       208 ~rl~s~sdD~tv~Iw~~~~~~-----~-~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aH  279 (312)
T KOG0645|consen  208 SRLVSCSDDGTVSIWRLYTDL-----S-GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAH  279 (312)
T ss_pred             ceEEEecCCcceEeeeeccCc-----c-hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccc
Confidence            899999999999999977531     1 1233444 68887  6789999999999999765322           2345


Q ss_pred             ccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          675 NMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       675 ~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      ...|+++.|.|...      +.|++|+..
T Consensus       280 e~dVNsV~w~p~~~------~~L~s~~DD  302 (312)
T KOG0645|consen  280 EVDVNSVQWNPKVS------NRLASGGDD  302 (312)
T ss_pred             ccccceEEEcCCCC------CceeecCCC
Confidence            67999999999632      888988875

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=3.5e-22  Score=217.46  Aligned_cols=227  Identities=15%  Similarity=0.209  Sum_probs=190.8

Q ss_pred             cCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969          454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~  533 (721)
                      .+|++..|-+ ..+++++|++|+.|+||+..+++.++.+.  +|.+-|.+++.+ |...+++|+|+|-+|++||.+.+-.
T Consensus        56 ~PvRa~kfia-RknWiv~GsDD~~IrVfnynt~ekV~~Fe--AH~DyIR~iavH-Pt~P~vLtsSDDm~iKlW~we~~wa  131 (794)
T KOG0276|consen   56 VPVRAAKFIA-RKNWIVTGSDDMQIRVFNYNTGEKVKTFE--AHSDYIRSIAVH-PTLPYVLTSSDDMTIKLWDWENEWA  131 (794)
T ss_pred             cchhhheeee-ccceEEEecCCceEEEEecccceeeEEee--ccccceeeeeec-CCCCeEEecCCccEEEEeeccCcee
Confidence            3588888988 88999999999999999999999999998  899999999998 5667999999999999999988543


Q ss_pred             cccccccCcceeEec-cCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCC-CcEEE
Q 004969          534 SIRGMHYGAGTVTFD-EFDQLTSVHVNSMD-ELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHS-PSIFA  610 (721)
Q Consensus       534 ~~~~~~~~~~~~~~~-~~~~V~sv~~sp~~-~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg-~~lLa  610 (721)
                      .         ...|. |...|++++|+|.+ +.|++++-|++|++|.+.+..+..++.+ |...|++|.|-+-| .-+++
T Consensus       132 ~---------~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~g-HekGVN~Vdyy~~gdkpylI  201 (794)
T KOG0276|consen  132 C---------EQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEG-HEKGVNCVDYYTGGDKPYLI  201 (794)
T ss_pred             e---------eeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeec-cccCcceEEeccCCCcceEE
Confidence            2         33443 33458999999976 5688888899999999999999999997 99999999998765 24899


Q ss_pred             EEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC----CcccccccCeEEEEECC
Q 004969          611 TSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG----DPFRDFNMSILAAYTRP  685 (721)
Q Consensus       611 Sgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g----~~l~~~~~~V~~v~fsP  685 (721)
                      ||+.|.+|+|||..+..|  +.++.+|...+ .+.|+|.-..+++|+.||+++||.-..    +.+.---..+.+++-++
T Consensus       202 sgaDD~tiKvWDyQtk~C--V~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k  279 (794)
T KOG0276|consen  202 SGADDLTIKVWDYQTKSC--VQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHK  279 (794)
T ss_pred             ecCCCceEEEeecchHHH--HHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecC
Confidence            999999999999999866  66788898888 799999999999999999999998652    11111134788888888


Q ss_pred             CCCcccccccEEEEecCC
Q 004969          686 SSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       686 ~~~~~~v~v~lLASgs~~  703 (721)
                      ..       ..++.|.-.
T Consensus       280 ~~-------~~i~vG~De  290 (794)
T KOG0276|consen  280 GD-------GKIAVGFDE  290 (794)
T ss_pred             CC-------CeEEEeccC
Confidence            87       556666554

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.90  E-value=5.1e-23  Score=211.79  Aligned_cols=187  Identities=17%  Similarity=0.311  Sum_probs=166.9

Q ss_pred             CCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEE
Q 004969          496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIA  575 (721)
Q Consensus       496 ~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~Ir  575 (721)
                      +|.+.|.++++- |.+.+|++|+.|++|+|||+.+++.. ..+.        .|...|..+++++..+++++++.|+.|+
T Consensus       149 gHlgWVr~vavd-P~n~wf~tgs~DrtikIwDlatg~Lk-ltlt--------Ghi~~vr~vavS~rHpYlFs~gedk~VK  218 (460)
T KOG0285|consen  149 GHLGWVRSVAVD-PGNEWFATGSADRTIKIWDLATGQLK-LTLT--------GHIETVRGVAVSKRHPYLFSAGEDKQVK  218 (460)
T ss_pred             hccceEEEEeeC-CCceeEEecCCCceeEEEEcccCeEE-Eeec--------chhheeeeeeecccCceEEEecCCCeeE
Confidence            999999999997 67899999999999999999998762 1122        2446689999999999999999999999


Q ss_pred             EEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEE
Q 004969          576 LYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLG  654 (721)
Q Consensus       576 lWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Las  654 (721)
                      .||+...+.++.+.| |-+.|.+++.+|.- ..++||+.|.++||||+|+.  ..++.+.+|...+ ++.+.|....+++
T Consensus       219 CwDLe~nkvIR~YhG-HlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr--~~V~~l~GH~~~V~~V~~~~~dpqvit  294 (460)
T KOG0285|consen  219 CWDLEYNKVIRHYHG-HLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTR--ASVHVLSGHTNPVASVMCQPTDPQVIT  294 (460)
T ss_pred             EEechhhhhHHHhcc-ccceeEEEeccccc-eeEEecCCcceEEEeeeccc--ceEEEecCCCCcceeEEeecCCCceEE
Confidence            999999999999997 99999999999988 79999999999999999998  5588889999998 8999999999999


Q ss_pred             EeCCCcEEEEEcC-CCc---ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          655 KGSGTSMFVQSLR-GDP---FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       655 gs~Dg~I~VWDl~-g~~---l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      |+.|++|++||++ |+.   +..|+.+|.++..||..       +++||++..
T Consensus       295 ~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e-------~~fASas~d  340 (460)
T KOG0285|consen  295 GSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKE-------NLFASASPD  340 (460)
T ss_pred             ecCCceEEEeeeccCceeEeeecccceeeEEecCCch-------hhhhccCCc
Confidence            9999999999998 554   44567899999999998       888888875

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=2.1e-22  Score=199.66  Aligned_cols=228  Identities=16%  Similarity=0.206  Sum_probs=187.3

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCC-CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHEN-ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~t-g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      +..++|++...+.+++++.||.+++||... ..++..++  .|...|.++.|++.....++++|.||+|++|+...++. 
T Consensus        63 LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~k--EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S-  139 (311)
T KOG0277|consen   63 LFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFK--EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS-  139 (311)
T ss_pred             eeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHH--hhhhheEEeccccccceeEEeeccCCceEeecCCCCcc-
Confidence            677999998899999999999999999653 34566666  89999999999988888999999999999999987543 


Q ss_pred             ccccccCcceeEec-cCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969          535 IRGMHYGAGTVTFD-EFDQLTSVHVNSMD-ELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS  612 (721)
Q Consensus       535 ~~~~~~~~~~~~~~-~~~~V~sv~~sp~~-~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg  612 (721)
                               ..+|. |..-|....|+|.. +.+++++.|+++++||++..-....+.. |...|.+..|+...+++++||
T Consensus       140 ---------v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~a-h~~Eil~cdw~ky~~~vl~Tg  209 (311)
T KOG0277|consen  140 ---------VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEA-HNSEILCCDWSKYNHNVLATG  209 (311)
T ss_pred             ---------eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEe-ccceeEeecccccCCcEEEec
Confidence                     22333 34568999999975 5677778899999999996443344664 999999999999888999999


Q ss_pred             ECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecC-CCEEEEEeCCCcEEEEEcC-CC----cccccccCeEEEEECC
Q 004969          613 SFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPD-DHYLLGKGSGTSMFVQSLR-GD----PFRDFNMSILAAYTRP  685 (721)
Q Consensus       613 s~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpd-g~~Lasgs~Dg~I~VWDl~-g~----~l~~~~~~V~~v~fsP  685 (721)
                      +.|+.||+||+|+-+ .+++.+.+|.-.+ .++|||. ...|++++.|-+++|||.. ++    ....|..-|..+.|++
T Consensus       210 ~vd~~vr~wDir~~r-~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~  288 (311)
T KOG0277|consen  210 GVDNLVRGWDIRNLR-TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSL  288 (311)
T ss_pred             CCCceEEEEehhhcc-ccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEecccccc
Confidence            999999999999864 7788999999888 8999995 4678899999999999987 22    3455666788899988


Q ss_pred             CCCcccccccEEEEecCC
Q 004969          686 SSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       686 ~~~~~~v~v~lLASgs~~  703 (721)
                      ..+      ..+|+++=.
T Consensus       289 ~~~------~~vAs~gWD  300 (311)
T KOG0277|consen  289 FDP------GQVASTGWD  300 (311)
T ss_pred             ccC------ceeeecccc
Confidence            753      677777655

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.89  E-value=7.2e-23  Score=207.95  Aligned_cols=224  Identities=17%  Similarity=0.288  Sum_probs=191.8

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecC------CCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSF------GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDI  528 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~------~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi  528 (721)
                      .|-|..|+| ||+++++|+.||-|.|||..+|+..+.++..      -+..+|.|+.|+ .+...+++|+.||.|++|.+
T Consensus       215 h~EcA~FSP-DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FS-RDsEMlAsGsqDGkIKvWri  292 (508)
T KOG0275|consen  215 HVECARFSP-DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFS-RDSEMLASGSQDGKIKVWRI  292 (508)
T ss_pred             chhheeeCC-CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeec-ccHHHhhccCcCCcEEEEEE
Confidence            588999999 9999999999999999999999877655432      356899999998 88999999999999999999


Q ss_pred             CCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcE
Q 004969          529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSI  608 (721)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~l  608 (721)
                      .++.+.-.        ....|...|+++.|+.++..+++++.|.++|+.-+.+|+.++.|.+ |.+.|+...|.++| +.
T Consensus       293 ~tG~ClRr--------FdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrG-HsSyvn~a~ft~dG-~~  362 (508)
T KOG0275|consen  293 ETGQCLRR--------FDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRG-HSSYVNEATFTDDG-HH  362 (508)
T ss_pred             ecchHHHH--------hhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcC-ccccccceEEcCCC-Ce
Confidence            99876311        1113567799999999999999999999999999999999999998 99999999999999 89


Q ss_pred             EEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEec-CCCEEEEEeCCCcEEEEEcCCCccccc------ccCeEE
Q 004969          609 FATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSP-DDHYLLGKGSGTSMFVQSLRGDPFRDF------NMSILA  680 (721)
Q Consensus       609 LaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSp-dg~~Lasgs~Dg~I~VWDl~g~~l~~~------~~~V~~  680 (721)
                      +++++.||+|++|+..+..|...+...+....+ ++..-| +-..++++...++++|-++.|..++.+      .+...+
T Consensus       363 iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~  442 (508)
T KOG0275|consen  363 IISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFIN  442 (508)
T ss_pred             EEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEE
Confidence            999999999999999999887777766655555 666666 556788888899999999999887776      346677


Q ss_pred             EEECCCCCcc
Q 004969          681 AYTRPSSKSE  690 (721)
Q Consensus       681 v~fsP~~~~~  690 (721)
                      +..+|.|.+-
T Consensus       443 ~~lSpkGewi  452 (508)
T KOG0275|consen  443 AILSPKGEWI  452 (508)
T ss_pred             EEecCCCcEE
Confidence            7889998543

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=8.1e-22  Score=203.76  Aligned_cols=203  Identities=14%  Similarity=0.198  Sum_probs=168.8

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC--
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP--  533 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~--  533 (721)
                      |.++.|-| .|+++++++.|.+|+.|++.+|-++.+++  +|...|..++.+ .++..+++|+.|.+|++|-+.++++  
T Consensus       196 vS~V~f~P-~gd~ilS~srD~tik~We~~tg~cv~t~~--~h~ewvr~v~v~-~DGti~As~s~dqtl~vW~~~t~~~k~  271 (406)
T KOG0295|consen  196 VSSVFFLP-LGDHILSCSRDNTIKAWECDTGYCVKTFP--GHSEWVRMVRVN-QDGTIIASCSNDQTLRVWVVATKQCKA  271 (406)
T ss_pred             eeeEEEEe-cCCeeeecccccceeEEecccceeEEecc--CchHhEEEEEec-CCeeEEEecCCCceEEEEEeccchhhh
Confidence            78999999 88999999999999999999999999998  899999999987 8999999999999999999999754  


Q ss_pred             cccccccCcceeEeccCCCeEEEEEec----CCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEE
Q 004969          534 SIRGMHYGAGTVTFDEFDQLTSVHVNS----MDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIF  609 (721)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp----~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lL  609 (721)
                      ....+......+.+.+...-.++....    .++.+.+++.|++|++||+.++.++.++.+ |..+|..++|+|.| ++|
T Consensus       272 ~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~g-hdnwVr~~af~p~G-kyi  349 (406)
T KOG0295|consen  272 ELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVG-HDNWVRGVAFSPGG-KYI  349 (406)
T ss_pred             hhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEec-ccceeeeeEEcCCC-eEE
Confidence            222222222233333332222221100    125788888999999999999999999997 99999999999999 899


Q ss_pred             EEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEc
Q 004969          610 ATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSL  666 (721)
Q Consensus       610 aSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl  666 (721)
                      +++.+|+++++||+++.++  ...+..|...+ ++.|+.+..|+++|+.|..+++|.-
T Consensus       350 ~ScaDDktlrvwdl~~~~c--mk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  350 LSCADDKTLRVWDLKNLQC--MKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             EEEecCCcEEEEEecccee--eeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence            9999999999999999866  55556777777 8999999999999999999999964

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.89  E-value=4.9e-22  Score=210.77  Aligned_cols=230  Identities=22%  Similarity=0.338  Sum_probs=184.6

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe--------EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEE
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN--------IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLY  526 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~--------~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIW  526 (721)
                      .|..+.+.|++..++|+++..+.|.|||..+-.        +...+...+|.+.-++++|++.....|++|+.|++|++|
T Consensus       126 EVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lw  205 (422)
T KOG0264|consen  126 EVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLW  205 (422)
T ss_pred             cchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEE
Confidence            366778999999999999999999999986422        122223448988889999998888999999999999999


Q ss_pred             EcCCCCCcccccccCcceeEeccCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCC--CcEEEEEccccCCCeEEEEEcC
Q 004969          527 DIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD-ELFLASGYSKNIALYDINS--GRRLQVFADMHKEHINVVKFSN  603 (721)
Q Consensus       527 Di~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~-~~lls~g~Dg~IrlWDl~s--~~~v~~l~~~h~~~V~sI~fsP  603 (721)
                      |+......  ........+.-.|.+.|..++|++.. ..|.+++.|+.+.|||+|+  .++.+...+ |.+.|+|++|+|
T Consensus       206 di~~~~~~--~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a-h~~~vn~~~fnp  282 (422)
T KOG0264|consen  206 DINAESKE--DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA-HSAEVNCVAFNP  282 (422)
T ss_pred             eccccccC--CccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccc-cCCceeEEEeCC
Confidence            99875542  01111223334567789999999976 5666778899999999994  555556664 999999999999


Q ss_pred             CCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCC-CEEEEEeCCCcEEEEEcC--CCc---------
Q 004969          604 HSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDD-HYLLGKGSGTSMFVQSLR--GDP---------  670 (721)
Q Consensus       604 dg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg-~~Lasgs~Dg~I~VWDl~--g~~---------  670 (721)
                      .+..+|||||.|++|++||+|+.. .+.+++.+|...+ .+.|||.. ..|++++.|+.+.|||+.  |..         
T Consensus       283 ~~~~ilAT~S~D~tV~LwDlRnL~-~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dg  361 (422)
T KOG0264|consen  283 FNEFILATGSADKTVALWDLRNLN-KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDG  361 (422)
T ss_pred             CCCceEEeccCCCcEEEeechhcc-cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccC
Confidence            998999999999999999999864 4788999999988 99999955 677888999999999986  222         


Q ss_pred             -------ccccccCeEEEEECCCCC
Q 004969          671 -------FRDFNMSILAAYTRPSSK  688 (721)
Q Consensus       671 -------l~~~~~~V~~v~fsP~~~  688 (721)
                             -.+|...|....|+|..+
T Consensus       362 ppEllF~HgGH~~kV~DfsWnp~eP  386 (422)
T KOG0264|consen  362 PPELLFIHGGHTAKVSDFSWNPNEP  386 (422)
T ss_pred             CcceeEEecCcccccccccCCCCCC
Confidence                   135567899999999996

>PTZ00421 coronin; Provisional

Probab=99.89  E-value=7.1e-21  Score=215.62  Aligned_cols=228  Identities=13%  Similarity=0.203  Sum_probs=167.3

Q ss_pred             EEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEe-----------ecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEE
Q 004969          459 FEYHPSISCLMVFGTLDGEIVVVNHENENIVSYI-----------PSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYD  527 (721)
Q Consensus       459 lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l-----------~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWD  527 (721)
                      ...++ ++..+++++.+.....|+...|..+..+           ...+|.+.|++++|+|.++++|++|+.||+|++||
T Consensus        26 ~~~~~-d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWd  104 (493)
T PTZ00421         26 STALW-DCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWG  104 (493)
T ss_pred             ccccC-CCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEe
Confidence            33444 4455666666666667765544322111           12389999999999966888999999999999999


Q ss_pred             cCCCCCcccccccCcceeEe-ccCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCC
Q 004969          528 IRHMPPSIRGMHYGAGTVTF-DEFDQLTSVHVNSMD-ELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHS  605 (721)
Q Consensus       528 i~~~~~~~~~~~~~~~~~~~-~~~~~V~sv~~sp~~-~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg  605 (721)
                      +.++..... .  ......+ .|...|.+++|+|.+ +.+++++.|++|++||+++++.+..+.+ |...|.+++|+|+|
T Consensus       105 i~~~~~~~~-~--~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~-h~~~V~sla~spdG  180 (493)
T PTZ00421        105 IPEEGLTQN-I--SDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKC-HSDQITSLEWNLDG  180 (493)
T ss_pred             cCCCccccc-c--CcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcC-CCCceEEEEEECCC
Confidence            986432100 0  0112222 356789999999986 6888999999999999999999999886 99999999999999


Q ss_pred             CcEEEEEECCCcEEEEECCCCCceeEEEecCCCCe--EEEEEecCCCEEEEEe----CCCcEEEEEcCC--Cccccc---
Q 004969          606 PSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGN--VMVCFSPDDHYLLGKG----SGTSMFVQSLRG--DPFRDF---  674 (721)
Q Consensus       606 ~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~--vsl~fSpdg~~Lasgs----~Dg~I~VWDl~g--~~l~~~---  674 (721)
                       .++++|+.|++|++||+++++.  +..+.+|.+.  ..+.|.+++..+++++    .|+.|++||++.  .++...   
T Consensus       181 -~lLatgs~Dg~IrIwD~rsg~~--v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d  257 (493)
T PTZ00421        181 -SLLCTTSKDKKLNIIDPRDGTI--VSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLD  257 (493)
T ss_pred             -CEEEEecCCCEEEEEECCCCcE--EEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccC
Confidence             7999999999999999999854  4555566543  3688999888887754    478999999982  233221   


Q ss_pred             -ccCeEEEEECCCCCcccccccEEEEec
Q 004969          675 -NMSILAAYTRPSSKSEIVKVNLLASTD  701 (721)
Q Consensus       675 -~~~V~~v~fsP~~~~~~v~v~lLASgs  701 (721)
                       ...+....|+|++       ++|++|+
T Consensus       258 ~~~~~~~~~~d~d~-------~~L~lgg  278 (493)
T PTZ00421        258 QSSALFIPFFDEDT-------NLLYIGS  278 (493)
T ss_pred             CCCceEEEEEcCCC-------CEEEEEE
Confidence             2345556789998       6666665

>PTZ00420 coronin; Provisional

Probab=99.89  E-value=1e-20  Score=215.81  Aligned_cols=218  Identities=17%  Similarity=0.313  Sum_probs=163.4

Q ss_pred             EECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCC
Q 004969          472 GTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFD  551 (721)
Q Consensus       472 Gs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~  551 (721)
                      |+.+|.|++|+......+..+.  +|.+.|.+++|+|.++.+|+||+.||+|++||+.++......... .......|..
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~--gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~-p~~~L~gH~~  126 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLK--GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKD-PQCILKGHKK  126 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEc--CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccccccc-ceEEeecCCC
Confidence            6678999999988776666666  899999999999666889999999999999999864321111100 0111224667


Q ss_pred             CeEEEEEecCCCEE-EEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCcee
Q 004969          552 QLTSVHVNSMDELF-LASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQP  630 (721)
Q Consensus       552 ~V~sv~~sp~~~~l-ls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~  630 (721)
                      .|.+++|+|.+..+ ++++.|++|++||+++++.+..+.  |...|.+++|+|+| .++++++.|+.|+|||++++..  
T Consensus       127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~--~~~~V~SlswspdG-~lLat~s~D~~IrIwD~Rsg~~--  201 (568)
T PTZ00420        127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN--MPKKLSSLKWNIKG-NLLSGTCVGKHMHIIDPRKQEI--  201 (568)
T ss_pred             cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe--cCCcEEEEEECCCC-CEEEEEecCCEEEEEECCCCcE--
Confidence            89999999998765 577889999999999999887776  66789999999999 7999999999999999999854  


Q ss_pred             EEEecCCCCeE------EEEEecCCCEEEEEeCCC----cEEEEEcC--CCccccc--c---cCeEEEEECCCCCccccc
Q 004969          631 CYTASSSKGNV------MVCFSPDDHYLLGKGSGT----SMFVQSLR--GDPFRDF--N---MSILAAYTRPSSKSEIVK  693 (721)
Q Consensus       631 ~~~~~~~~~~v------sl~fSpdg~~Lasgs~Dg----~I~VWDl~--g~~l~~~--~---~~V~~v~fsP~~~~~~v~  693 (721)
                      +..+.+|.+.+      ...|++++.+|++++.|+    .|+|||++  +.++...  .   +.+......+++      
T Consensus       202 i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg------  275 (568)
T PTZ00420        202 ASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTG------  275 (568)
T ss_pred             EEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCC------
Confidence            45566676543      123568999999988774    79999998  3444322  1   223333445556      


Q ss_pred             ccEEEEecCCC
Q 004969          694 VNLLASTDHCD  704 (721)
Q Consensus       694 v~lLASgs~~~  704 (721)
                       .++++|++..
T Consensus       276 -~l~lsGkGD~  285 (568)
T PTZ00420        276 -LIYLIGKGDG  285 (568)
T ss_pred             -CEEEEEECCC
Confidence             6777776663

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=2.6e-21  Score=189.91  Aligned_cols=212  Identities=15%  Similarity=0.240  Sum_probs=162.2

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      +|+++.|+- +|++.++++.|.+|++|+...|.+++++.  +|...|..++-+ .++..+++|+.|..|.+||+++++. 
T Consensus        19 aV~avryN~-dGnY~ltcGsdrtvrLWNp~rg~liktYs--ghG~EVlD~~~s-~Dnskf~s~GgDk~v~vwDV~TGkv-   93 (307)
T KOG0316|consen   19 AVRAVRYNV-DGNYCLTCGSDRTVRLWNPLRGALIKTYS--GHGHEVLDAALS-SDNSKFASCGGDKAVQVWDVNTGKV-   93 (307)
T ss_pred             ceEEEEEcc-CCCEEEEcCCCceEEeecccccceeeeec--CCCceeeecccc-ccccccccCCCCceEEEEEcccCee-
Confidence            589999999 99999999999999999999999999998  777889999987 7889999999999999999999875 


Q ss_pred             ccccccCcceeEe-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC--CcEEEEEccccCCCeEEEEEcCCCCcEEEE
Q 004969          535 IRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINS--GRRLQVFADMHKEHINVVKFSNHSPSIFAT  611 (721)
Q Consensus       535 ~~~~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s--~~~v~~l~~~h~~~V~sI~fsPdg~~lLaS  611 (721)
                               ...| .|..+|+.+.|+.....+++|+.|.++++||.++  .++++.+.. ....|.+|..+.   ..+++
T Consensus        94 ---------~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQilde-a~D~V~Si~v~~---heIva  160 (307)
T KOG0316|consen   94 ---------DRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDE-AKDGVSSIDVAE---HEIVA  160 (307)
T ss_pred             ---------eeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhh-hcCceeEEEecc---cEEEe
Confidence                     2233 3456799999999999999999999999999986  467777765 566677776653   35677


Q ss_pred             EECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCC-----------------------------------------
Q 004969          612 SSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDH-----------------------------------------  650 (721)
Q Consensus       612 gs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~-----------------------------------------  650 (721)
                      |+.||++|.||+|.+....-+   -...+.+++|++||+                                         
T Consensus       161 GS~DGtvRtydiR~G~l~sDy---~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~q  237 (307)
T KOG0316|consen  161 GSVDGTVRTYDIRKGTLSSDY---FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQ  237 (307)
T ss_pred             eccCCcEEEEEeecceeehhh---cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecc
Confidence            777777777777765321111   111222555555554                                         


Q ss_pred             ---EEEEEeCCCcEEEEEcCC-Cc---ccccccC-eEEEEECCCC
Q 004969          651 ---YLLGKGSGTSMFVQSLRG-DP---FRDFNMS-ILAAYTRPSS  687 (721)
Q Consensus       651 ---~Lasgs~Dg~I~VWDl~g-~~---l~~~~~~-V~~v~fsP~~  687 (721)
                         .+++|+.||.+++||+-. +.   +..+... +..+.+||..
T Consensus       238 sdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~  282 (307)
T KOG0316|consen  238 SDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTM  282 (307)
T ss_pred             cceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCc
Confidence               444889999999999862 22   2233334 7789999987

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=1.7e-21  Score=219.72  Aligned_cols=234  Identities=16%  Similarity=0.189  Sum_probs=181.8

Q ss_pred             cCeEEEEEeCCCCCEEEEEECCCeEEEEECCCC-------------------------------eEE-------------
Q 004969          454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENE-------------------------------NIV-------------  489 (721)
Q Consensus       454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg-------------------------------~~i-------------  489 (721)
                      -+|+++.|++ ||++||+|+.||.|+||.+...                               ...             
T Consensus       268 gaIw~mKFS~-DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~  346 (712)
T KOG0283|consen  268 GAIWAMKFSH-DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSP  346 (712)
T ss_pred             CcEEEEEeCC-CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCc
Confidence            3699999999 9999999999999999987540                               000             


Q ss_pred             -EEe-------------ecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEE
Q 004969          490 -SYI-------------PSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTS  555 (721)
Q Consensus       490 -~~l-------------~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~s  555 (721)
                       ..+             ...||.+.|.++.|+  .+++|+++|.|.|||+|++....+          ...|.|.+-|+|
T Consensus       347 ~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS--Kn~fLLSSSMDKTVRLWh~~~~~C----------L~~F~HndfVTc  414 (712)
T KOG0283|consen  347 CVLLPLKAFVFSEKPFCEFKGHTADILDLSWS--KNNFLLSSSMDKTVRLWHPGRKEC----------LKVFSHNDFVTC  414 (712)
T ss_pred             cccCCCccccccccchhhhhccchhheecccc--cCCeeEeccccccEEeecCCCcce----------eeEEecCCeeEE
Confidence             000             013999999999998  578999999999999999998544          678999999999


Q ss_pred             EEEecC-CCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEe
Q 004969          556 VHVNSM-DELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTA  634 (721)
Q Consensus       556 v~~sp~-~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~  634 (721)
                      |+|+|- +++|++|+-||.||||++...+.+.-..  -..-|++++|.|+| ...+.|+.+|.+++|++...+......+
T Consensus       415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D--l~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk~~~~~~I  491 (712)
T KOG0283|consen  415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND--LRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLKLVSDFHI  491 (712)
T ss_pred             EEecccCCCcEeecccccceEEeecCcCeeEeehh--hhhhheeEEeccCC-ceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence            999996 4677888889999999999777665444  45789999999999 7999999999999999998655443333


Q ss_pred             cC-------CCCeEEEEEecCC-CEEEEEeCCCcEEEEEcCC----Ccccccc--cCeEEEEECCCCCcccccccEEEEe
Q 004969          635 SS-------SKGNVMVCFSPDD-HYLLGKGSGTSMFVQSLRG----DPFRDFN--MSILAAYTRPSSKSEIVKVNLLAST  700 (721)
Q Consensus       635 ~~-------~~~~vsl~fSpdg-~~Lasgs~Dg~I~VWDl~g----~~l~~~~--~~V~~v~fsP~~~~~~v~v~lLASg  700 (721)
                      ..       +..++.+.|.|.. ..+++.+.|..|+|+|.+.    ..++++.  .....+.|++++       ..|+++
T Consensus       492 ~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dg-------k~IVs~  564 (712)
T KOG0283|consen  492 RLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDG-------KHIVSA  564 (712)
T ss_pred             eeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCC-------CEEEEe
Confidence            22       2234578888733 4577778899999999962    3466663  356778999999       888888


Q ss_pred             cCCCccccCCcc
Q 004969          701 DHCDKECSHGQH  712 (721)
Q Consensus       701 s~~~ke~s~~~~  712 (721)
                      +..  .+.+.++
T Consensus       565 seD--s~VYiW~  574 (712)
T KOG0283|consen  565 SED--SWVYIWK  574 (712)
T ss_pred             ecC--ceEEEEe
Confidence            854  4444433

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.88  E-value=1.1e-20  Score=195.52  Aligned_cols=157  Identities=14%  Similarity=0.200  Sum_probs=141.7

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|.+++.+| +.+++++|+.|..-.+|++.+|.....+.  +|+..|+++.|+ .++.+|+||+.+|.|+||+..++...
T Consensus        66 svFavsl~P-~~~l~aTGGgDD~AflW~~~~ge~~~elt--gHKDSVt~~~Fs-hdgtlLATGdmsG~v~v~~~stg~~~  141 (399)
T KOG0296|consen   66 SVFAVSLHP-NNNLVATGGGDDLAFLWDISTGEFAGELT--GHKDSVTCCSFS-HDGTLLATGDMSGKVLVFKVSTGGEQ  141 (399)
T ss_pred             ceEEEEeCC-CCceEEecCCCceEEEEEccCCcceeEec--CCCCceEEEEEc-cCceEEEecCCCccEEEEEcccCceE
Confidence            589999999 99999999999999999999999877777  999999999998 89999999999999999999986542


Q ss_pred             ccccccCcceeEe-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969          535 IRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS  613 (721)
Q Consensus       535 ~~~~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs  613 (721)
                                ..+ ..-..+.=+.|||.+..+++|+.||.+.+|.+.++...+.+.| |+.++++=.|.|+| +.++++.
T Consensus       142 ----------~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~G-h~~~ct~G~f~pdG-Kr~~tgy  209 (399)
T KOG0296|consen  142 ----------WKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSG-HNSPCTCGEFIPDG-KRILTGY  209 (399)
T ss_pred             ----------EEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecC-CCCCcccccccCCC-ceEEEEe
Confidence                      222 2334577789999999999999999999999999888899997 99999999999999 8999999


Q ss_pred             CCCcEEEEECCCCC
Q 004969          614 FDQDVKLWDLRQKP  627 (721)
Q Consensus       614 ~DgtIrIWDlrs~~  627 (721)
                      .||+|++||+.++.
T Consensus       210 ~dgti~~Wn~ktg~  223 (399)
T KOG0296|consen  210 DDGTIIVWNPKTGQ  223 (399)
T ss_pred             cCceEEEEecCCCc
Confidence            99999999998864

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.88  E-value=1.7e-21  Score=197.43  Aligned_cols=201  Identities=21%  Similarity=0.365  Sum_probs=166.0

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCC------------C------eEEEEeecCCCCCCeEEEEEeeCCCCEEEE
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHEN------------E------NIVSYIPSFGAMNSVLGLCWLKKYPSKLIA  516 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~t------------g------~~i~~l~~~~H~~~V~sl~fsp~d~~~LaS  516 (721)
                      .+++-+|+| ||.++|+|+.|..|+|.|++.            |      -.++++-  .|...|+++.|+ |....|++
T Consensus       114 ~cR~aafs~-DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlY--DH~devn~l~FH-Pre~ILiS  189 (430)
T KOG0640|consen  114 PCRAAAFSP-DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLY--DHVDEVNDLDFH-PRETILIS  189 (430)
T ss_pred             ceeeeeeCC-CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehh--hccCcccceeec-chhheEEe
Confidence            588999999 999999999999999999861            1      1234443  899999999999 67789999


Q ss_pred             EeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEc--cccCC
Q 004969          517 GSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFA--DMHKE  594 (721)
Q Consensus       517 gs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~--~~h~~  594 (721)
                      |+.|++|+++|+.....       ....-.+....+|.++.|||.|.++++|....++++||+.+-++...-.  ..|.+
T Consensus       190 ~srD~tvKlFDfsK~sa-------KrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~  262 (430)
T KOG0640|consen  190 GSRDNTVKLFDFSKTSA-------KRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG  262 (430)
T ss_pred             ccCCCeEEEEecccHHH-------HHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccc
Confidence            99999999999987432       1112234455789999999999999999999999999999987755433  24999


Q ss_pred             CeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          595 HINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       595 ~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                      .|+++.+++.| ++.+||+.||.|++||--+++|...+.-.+....+ +..|..+|+|+++.+.|..+++|.+.
T Consensus       263 ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~  335 (430)
T KOG0640|consen  263 AITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIS  335 (430)
T ss_pred             ceeEEEecCCc-cEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeec
Confidence            99999999999 89999999999999999888776554333333334 89999999999999999999999985

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.88  E-value=4.8e-21  Score=198.97  Aligned_cols=219  Identities=17%  Similarity=0.290  Sum_probs=181.5

Q ss_pred             CCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCC--CEEEEEeCCCeEEEEEcCCCCCcccccccCcc
Q 004969          466 SCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYP--SKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAG  543 (721)
Q Consensus       466 g~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~--~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~  543 (721)
                      +++|++|++||++++||.. |+....+.  ||.++|.+++|.-.+.  ..|+++|.|.++++|.++.+........    
T Consensus       115 ~~~IltgsYDg~~riWd~~-Gk~~~~~~--Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~----  187 (423)
T KOG0313|consen  115 SKWILTGSYDGTSRIWDLK-GKSIKTIV--GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALK----  187 (423)
T ss_pred             CceEEEeecCCeeEEEecC-CceEEEEe--cCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHh----
Confidence            4899999999999999986 78888777  9999999999974333  3699999999999999998766333221    


Q ss_pred             eeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC-------------------------CcEEEEEccccCCCeEE
Q 004969          544 TVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINS-------------------------GRRLQVFADMHKEHINV  598 (721)
Q Consensus       544 ~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s-------------------------~~~v~~l~~~h~~~V~s  598 (721)
                       ....|...|.+++..+++..+++|+.|.++.+|+..+                         +.++..+.+ |..+|.+
T Consensus       188 -~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G-Ht~~Vs~  265 (423)
T KOG0313|consen  188 -VCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG-HTEPVSS  265 (423)
T ss_pred             -HhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc-cccceee
Confidence             1226778899999999999999999999999999221                         234556666 9999999


Q ss_pred             EEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC-------Ccc
Q 004969          599 VKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRG-------DPF  671 (721)
Q Consensus       599 I~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g-------~~l  671 (721)
                      |.|++.  ..+.+++.|.+|+.||+.++..  ...+.+.....++.++|..+.|++|+.|..+++||-+.       ..+
T Consensus       266 V~w~d~--~v~yS~SwDHTIk~WDletg~~--~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~  341 (423)
T KOG0313|consen  266 VVWSDA--TVIYSVSWDHTIKVWDLETGGL--KSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSL  341 (423)
T ss_pred             EEEcCC--CceEeecccceEEEEEeecccc--eeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEee
Confidence            999985  4899999999999999999865  44445555666999999999999999999999999882       236


Q ss_pred             cccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          672 RDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       672 ~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      .+|+..|.++.|+|...      .+|+||+..
T Consensus       342 ~gH~nwVssvkwsp~~~------~~~~S~S~D  367 (423)
T KOG0313|consen  342 IGHKNWVSSVKWSPTNE------FQLVSGSYD  367 (423)
T ss_pred             ecchhhhhheecCCCCc------eEEEEEecC
Confidence            78888999999999884      788888887

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=3.9e-21  Score=211.93  Aligned_cols=236  Identities=14%  Similarity=0.172  Sum_probs=199.0

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|+++.|++ +|.+|++|..+|.|.|||..+.+.+..+.. +|...|-+++|.   +..+.+|+.||.|..+|++..+..
T Consensus       219 ~vtSv~ws~-~G~~LavG~~~g~v~iwD~~~~k~~~~~~~-~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~  293 (484)
T KOG0305|consen  219 LVTSVKWSP-DGSHLAVGTSDGTVQIWDVKEQKKTRTLRG-SHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHV  293 (484)
T ss_pred             ceEEEEECC-CCCEEEEeecCCeEEEEehhhccccccccC-CcCceeEEEecc---CceEEEecCCCcEEEEEEecchhh
Confidence            699999999 999999999999999999998888888873 389999999996   678999999999999999986653


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE-
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS-  613 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs-  613 (721)
                      ...        .-.|...|..+.|++++.++++||.|+.+.|||.....+...+.+ |...|.+++|+|....+||+|+ 
T Consensus       294 ~~~--------~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~-H~aAVKA~awcP~q~~lLAsGGG  364 (484)
T KOG0305|consen  294 VST--------LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTE-HTAAVKALAWCPWQSGLLATGGG  364 (484)
T ss_pred             hhh--------hhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEec-cceeeeEeeeCCCccCceEEcCC
Confidence            221        223556789999999999999999999999999988888888887 9999999999999888999975 


Q ss_pred             -CCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEE--eCCCcEEEEEcC----CCcccccccCeEEEEECCC
Q 004969          614 -FDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGK--GSGTSMFVQSLR----GDPFRDFNMSILAAYTRPS  686 (721)
Q Consensus       614 -~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasg--s~Dg~I~VWDl~----g~~l~~~~~~V~~v~fsP~  686 (721)
                       .|++|++||+.++..  +........+.++.|++..+-|+++  ..++.|.||+..    -..+.+|...|..++++|+
T Consensus       365 s~D~~i~fwn~~~g~~--i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPd  442 (484)
T KOG0305|consen  365 SADRCIKFWNTNTGAR--IDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPD  442 (484)
T ss_pred             CcccEEEEEEcCCCcE--ecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCC
Confidence             499999999999854  5555555666689999998777765  456789999985    3457788889999999999


Q ss_pred             CCcccccccEEEEecCCCccccCCcccCC
Q 004969          687 SKSEIVKVNLLASTDHCDKECSHGQHSRP  715 (721)
Q Consensus       687 ~~~~~v~v~lLASgs~~~ke~s~~~~~~p  715 (721)
                      +       ..+++|+..  |..+.++.++
T Consensus       443 g-------~~i~t~a~D--ETlrfw~~f~  462 (484)
T KOG0305|consen  443 G-------ETIVTGAAD--ETLRFWNLFD  462 (484)
T ss_pred             C-------CEEEEeccc--CcEEeccccC
Confidence            9       889998887  5555554443

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.87  E-value=5.9e-21  Score=200.93  Aligned_cols=224  Identities=19%  Similarity=0.296  Sum_probs=192.1

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI  535 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~  535 (721)
                      ++++...| ..+.+++|+.|.++.++|...++.+.+++  ||...|+.+.|+ ++...+++++.|..|+||.......  
T Consensus       222 i~ald~~~-s~~~ilTGG~d~~av~~d~~s~q~l~~~~--Gh~kki~~v~~~-~~~~~v~~aSad~~i~vws~~~~s~--  295 (506)
T KOG0289|consen  222 ITALDIIP-SSSKILTGGEDKTAVLFDKPSNQILATLK--GHTKKITSVKFH-KDLDTVITASADEIIRVWSVPLSSE--  295 (506)
T ss_pred             eeEEeecC-CCCcceecCCCCceEEEecchhhhhhhcc--CcceEEEEEEec-cchhheeecCCcceEEeeccccccC--
Confidence            67788888 47889999999999999999999999998  999999999998 7888999999999999999877442  


Q ss_pred             cccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcc-ccCCCeEEEEEcCCCCcEEEEEEC
Q 004969          536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD-MHKEHINVVKFSNHSPSIFATSSF  614 (721)
Q Consensus       536 ~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~-~h~~~V~sI~fsPdg~~lLaSgs~  614 (721)
                             ......|..+|+.+..||.|.+|++++.||++.+.|++++..+..... ...-.+++.+|+||| .+|.+|..
T Consensus       296 -------~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg-Lifgtgt~  367 (506)
T KOG0289|consen  296 -------PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG-LIFGTGTP  367 (506)
T ss_pred             -------ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc-eEEeccCC
Confidence                   234556788999999999999999999999999999999998877662 123458999999999 89999999


Q ss_pred             CCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC-Cccccc----ccCeEEEEECCCCC
Q 004969          615 DQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG-DPFRDF----NMSILAAYTRPSSK  688 (721)
Q Consensus       615 DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g-~~l~~~----~~~V~~v~fsP~~~  688 (721)
                      ||.|+|||+.++.  .+..+++|.+.+ .++|+.+|-||+++..|+.|++||+|. +.++.+    ...+..+.|.+.| 
T Consensus       368 d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SG-  444 (506)
T KOG0289|consen  368 DGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSG-  444 (506)
T ss_pred             CceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCC-
Confidence            9999999999875  467788999999 899999999999999999999999993 234444    2368999999999 


Q ss_pred             cccccccEEEEecC
Q 004969          689 SEIVKVNLLASTDH  702 (721)
Q Consensus       689 ~~~v~v~lLASgs~  702 (721)
                            .+|+.++.
T Consensus       445 ------t~L~~~g~  452 (506)
T KOG0289|consen  445 ------TYLGIAGS  452 (506)
T ss_pred             ------CeEEeecc
Confidence                  55555543

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.87  E-value=2.6e-22  Score=205.63  Aligned_cols=205  Identities=16%  Similarity=0.306  Sum_probs=169.8

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|+|+.+..   ..+++|..|++|+|||..+-.+...+.  ||+++|.|+.|.   ...+++||.|.+|+|||.+++++.
T Consensus       199 gVYClQYDD---~kiVSGlrDnTikiWD~n~~~c~~~L~--GHtGSVLCLqyd---~rviisGSSDsTvrvWDv~tge~l  270 (499)
T KOG0281|consen  199 GVYCLQYDD---EKIVSGLRDNTIKIWDKNSLECLKILT--GHTGSVLCLQYD---ERVIVSGSSDSTVRVWDVNTGEPL  270 (499)
T ss_pred             ceEEEEecc---hhhhcccccCceEEeccccHHHHHhhh--cCCCcEEeeecc---ceEEEecCCCceEEEEeccCCchh
Confidence            489999955   789999999999999999888888777  999999999974   569999999999999999998762


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcE---EEEEccccCCCeEEEEEcCCCCcEEEE
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRR---LQVFADMHKEHINVVKFSNHSPSIFAT  611 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~---v~~l~~~h~~~V~sI~fsPdg~~lLaS  611 (721)
                       .        .-+.|-+.|..+.|  .++++++++.|.++.+||+.+...   .+.+.| |...|+.+.|+.   +++++
T Consensus       271 -~--------tlihHceaVLhlrf--~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvG-HrAaVNvVdfd~---kyIVs  335 (499)
T KOG0281|consen  271 -N--------TLIHHCEAVLHLRF--SNGYMVTCSKDRSIAVWDMASPTDITLRRVLVG-HRAAVNVVDFDD---KYIVS  335 (499)
T ss_pred             -h--------HHhhhcceeEEEEE--eCCEEEEecCCceeEEEeccCchHHHHHHHHhh-hhhheeeecccc---ceEEE
Confidence             2        12334466788888  678999999999999999987653   245556 999999999963   59999


Q ss_pred             EECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC-CCc---ccccccCeEEEEECCC
Q 004969          612 SSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR-GDP---FRDFNMSILAAYTRPS  686 (721)
Q Consensus       612 gs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~---l~~~~~~V~~v~fsP~  686 (721)
                      ++.|.+|++|++.+..+  +.++.+|...+ ++.+  .|+++++|+.|++|++||+. |.-   +.+|+.-|.++.|...
T Consensus       336 ASgDRTikvW~~st~ef--vRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~k  411 (499)
T KOG0281|consen  336 ASGDRTIKVWSTSTCEF--VRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK  411 (499)
T ss_pred             ecCCceEEEEeccceee--ehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCc
Confidence            99999999999999855  66677887776 5544  69999999999999999998 443   4566667888888653

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.87  E-value=2.2e-21  Score=207.45  Aligned_cols=227  Identities=20%  Similarity=0.324  Sum_probs=167.4

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCC---------------------------CeEE------------------
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHEN---------------------------ENIV------------------  489 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~t---------------------------g~~i------------------  489 (721)
                      .|.++++.| .|.++++|+.|.+|++||+..                           |..+                  
T Consensus       169 ~Vsal~~Dp-~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~  247 (641)
T KOG0772|consen  169 IVSALAVDP-SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFE  247 (641)
T ss_pred             EEEEeeecC-CCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCce
Confidence            478888888 888888888888888888642                           1111                  


Q ss_pred             --EEe----------ecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEE
Q 004969          490 --SYI----------PSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVH  557 (721)
Q Consensus       490 --~~l----------~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~  557 (721)
                        ...          ...||...+++.+|+|...+.++|++.||++||||+...+...+.+.....   -...-++++++
T Consensus       248 ~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~---~g~Rv~~tsC~  324 (641)
T KOG0772|consen  248 IVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA---GGKRVPVTSCA  324 (641)
T ss_pred             eeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC---CCcccCceeee
Confidence              000          113899999999999988999999999999999999886542221111000   01223589999


Q ss_pred             EecCCCEEEEEeCCCcEEEEECCCC--cEEEEEccccCC--CeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEE
Q 004969          558 VNSMDELFLASGYSKNIALYDINSG--RRLQVFADMHKE--HINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYT  633 (721)
Q Consensus       558 ~sp~~~~lls~g~Dg~IrlWDl~s~--~~v~~l~~~h~~--~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~  633 (721)
                      |++++..|++|..||.|.+||.++.  .+...+..+|..  .|++|.|+++| ++|++-+.|+++++||+|+.+ .++..
T Consensus       325 ~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg-~~LlSRg~D~tLKvWDLrq~k-kpL~~  402 (641)
T KOG0772|consen  325 WNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG-NYLLSRGFDDTLKVWDLRQFK-KPLNV  402 (641)
T ss_pred             cCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc-chhhhccCCCceeeeeccccc-cchhh
Confidence            9999999999999999999998653  344555556877  99999999999 899999999999999999853 34443


Q ss_pred             ecCC---CCeEEEEEecCCCEEEEEeC------CCcEEEEEcCCC-c---ccccccCeEEEEECCCC
Q 004969          634 ASSS---KGNVMVCFSPDDHYLLGKGS------GTSMFVQSLRGD-P---FRDFNMSILAAYTRPSS  687 (721)
Q Consensus       634 ~~~~---~~~vsl~fSpdg~~Lasgs~------Dg~I~VWDl~g~-~---l~~~~~~V~~v~fsP~~  687 (721)
                      ..+-   .....++|||+.+.|++|+.      .|.+++||...- .   +---..+|..+.|||.-
T Consensus       403 ~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkL  469 (641)
T KOG0772|consen  403 RTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKL  469 (641)
T ss_pred             hcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchh
Confidence            3332   22236899999999999854      457889886521 1   11115689999999987

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=4.2e-21  Score=204.97  Aligned_cols=222  Identities=15%  Similarity=0.211  Sum_probs=180.5

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      -|.++.|-. ||.++|+|...|.|+|+|..+...+..+.  +|+.+|..+.|+|.++..+++|++|+.+++||+.+... 
T Consensus        70 ~v~s~~fR~-DG~LlaaGD~sG~V~vfD~k~r~iLR~~~--ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-  145 (487)
T KOG0310|consen   70 VVYSVDFRS-DGRLLAAGDESGHVKVFDMKSRVILRQLY--AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-  145 (487)
T ss_pred             ceeEEEeec-CCeEEEccCCcCcEEEeccccHHHHHHHh--hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-
Confidence            378899999 99999999999999999977655666666  89999999999999999999999999999999998532 


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCC-cEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDE-LFLASGYSKNIALYDINSG-RRLQVFADMHKEHINVVKFSNHSPSIFATS  612 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~-~lls~g~Dg~IrlWDl~s~-~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg  612 (721)
                      .        .-...|.+.|.+.+|+|..+ .+++||.||.|++||+++. ..+.++.  |..+|..+.+-|.| .+++++
T Consensus       146 ~--------~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln--hg~pVe~vl~lpsg-s~iasA  214 (487)
T KOG0310|consen  146 Q--------AELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN--HGCPVESVLALPSG-SLIASA  214 (487)
T ss_pred             E--------EEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec--CCCceeeEEEcCCC-CEEEEc
Confidence            1        12234667899999999877 5666778999999999987 7777887  99999999999998 688888


Q ss_pred             ECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCc-cc--ccccCeEEEEECCCCC
Q 004969          613 SFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDP-FR--DFNMSILAAYTRPSSK  688 (721)
Q Consensus       613 s~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~-l~--~~~~~V~~v~fsP~~~  688 (721)
                      +. ..|+|||+-++... +.....|...+ |+.+..++..|++|+-|+.+++||+..-. ..  .+.++|.+++.+|+..
T Consensus       215 gG-n~vkVWDl~~G~ql-l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~  292 (487)
T KOG0310|consen  215 GG-NSVKVWDLTTGGQL-LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQ  292 (487)
T ss_pred             CC-CeEEEEEecCCcee-hhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecCCCc
Confidence            74 57999999977543 33334355555 99999999999999999999999965222 22  3367999999999884


Q ss_pred             ccccc
Q 004969          689 SEIVK  693 (721)
Q Consensus       689 ~~~v~  693 (721)
                      ..+++
T Consensus       293 t~viG  297 (487)
T KOG0310|consen  293 TVVIG  297 (487)
T ss_pred             eEEEe
Confidence            44433

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.87  E-value=1.8e-21  Score=218.06  Aligned_cols=235  Identities=17%  Similarity=0.223  Sum_probs=184.9

Q ss_pred             cccceeeeeeeeeecC--CCCCCceeeeeccCCCCCCCC----CccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeE
Q 004969          415 MSQYFYTRSLCAAKVG--SSAWPCLHTLTVSGNHMGDEN----RSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENI  488 (721)
Q Consensus       415 ~~~~~~~r~l~a~k~~--~~a~p~~~~l~~~gh~~~~~~----~~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~  488 (721)
                      .+..+|...+.+++-.  ..+|.+...  ..|.+..+..    ....+++++.++ .|++.+.|+..|+|-+||+++|..
T Consensus       406 ~RE~~W~Nv~~~h~~~~~~~tW~~~n~--~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~  482 (910)
T KOG1539|consen  406 AREKEWDNVITAHKGKRSAYTWNFRNK--TSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIH  482 (910)
T ss_pred             chhhhhcceeEEecCcceEEEEeccCc--ccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccCee
Confidence            3455666666555544  233443321  1222222211    224689999999 999999999999999999999988


Q ss_pred             EEEee-cCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEE
Q 004969          489 VSYIP-SFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLA  567 (721)
Q Consensus       489 i~~l~-~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls  567 (721)
                      ...+. ...|.++|++++.- ..++.+++++.+|.+++||..+...          .....-...+.++..|.....+++
T Consensus       483 r~sf~~~~ah~~~V~gla~D-~~n~~~vsa~~~Gilkfw~f~~k~l----------~~~l~l~~~~~~iv~hr~s~l~a~  551 (910)
T KOG1539|consen  483 RKSFGDSPAHKGEVTGLAVD-GTNRLLVSAGADGILKFWDFKKKVL----------KKSLRLGSSITGIVYHRVSDLLAI  551 (910)
T ss_pred             ecccccCccccCceeEEEec-CCCceEEEccCcceEEEEecCCcce----------eeeeccCCCcceeeeeehhhhhhh
Confidence            87772 34899999999974 6678899999999999999998542          122233345778888888889999


Q ss_pred             EeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEec
Q 004969          568 SGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSP  647 (721)
Q Consensus       568 ~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSp  647 (721)
                      +..|-.|+++|..+.+.++.|.+ |++.|+.++|+||| +++++++.|++||+||+.++.+.-..  ......+++.|||
T Consensus       552 ~~ddf~I~vvD~~t~kvvR~f~g-h~nritd~~FS~Dg-rWlisasmD~tIr~wDlpt~~lID~~--~vd~~~~sls~SP  627 (910)
T KOG1539|consen  552 ALDDFSIRVVDVVTRKVVREFWG-HGNRITDMTFSPDG-RWLISASMDSTIRTWDLPTGTLIDGL--LVDSPCTSLSFSP  627 (910)
T ss_pred             hcCceeEEEEEchhhhhhHHhhc-cccceeeeEeCCCC-cEEEEeecCCcEEEEeccCcceeeeE--ecCCcceeeEECC
Confidence            99999999999999999999998 99999999999999 89999999999999999998664333  3344566899999


Q ss_pred             CCCEEEEEeCC-CcEEEEEcC
Q 004969          648 DDHYLLGKGSG-TSMFVQSLR  667 (721)
Q Consensus       648 dg~~Lasgs~D-g~I~VWDl~  667 (721)
                      +|++||++..| ..|++|.-+
T Consensus       628 ngD~LAT~Hvd~~gIylWsNk  648 (910)
T KOG1539|consen  628 NGDFLATVHVDQNGIYLWSNK  648 (910)
T ss_pred             CCCEEEEEEecCceEEEEEch
Confidence            99999999988 689999744

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=6.1e-20  Score=187.59  Aligned_cols=236  Identities=16%  Similarity=0.184  Sum_probs=183.0

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeec----------------------------------------
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPS----------------------------------------  494 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~----------------------------------------  494 (721)
                      +|.++.|++ +|.++++++.|.++++||..+|+.++++..                                        
T Consensus        16 ~i~sl~fs~-~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylR   94 (311)
T KOG1446|consen   16 KINSLDFSD-DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLR   94 (311)
T ss_pred             ceeEEEecC-CCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEE
Confidence            589999999 999999999999999999887766554432                                        


Q ss_pred             --CCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCC
Q 004969          495 --FGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSK  572 (721)
Q Consensus       495 --~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg  572 (721)
                        .||...|.+++.+| -++.++|++.|++|++||++..++......           ..-..+++.|.|-.++++....
T Consensus        95 YF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~-----------~~~pi~AfDp~GLifA~~~~~~  162 (311)
T KOG1446|consen   95 YFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNL-----------SGRPIAAFDPEGLIFALANGSE  162 (311)
T ss_pred             EcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEec-----------CCCcceeECCCCcEEEEecCCC
Confidence              29999999999995 558999999999999999997655211111           1123467888888888887777


Q ss_pred             cEEEEECCC--CcEEEEEcc--ccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCe--EEEEEe
Q 004969          573 NIALYDINS--GRRLQVFAD--MHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGN--VMVCFS  646 (721)
Q Consensus       573 ~IrlWDl~s--~~~v~~l~~--~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~--vsl~fS  646 (721)
                      .|++||+|+  ..+..++.-  .-....+.+.|+|+| +.++.+...+.+++.|.-+|.....+......+.  .+.+|+
T Consensus       163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dG-K~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ft  241 (311)
T KOG1446|consen  163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDG-KSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFT  241 (311)
T ss_pred             eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCC-CEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEEC
Confidence            999999996  345555542  245678999999999 7888888899999999999876555555444332  388999


Q ss_pred             cCCCEEEEEeCCCcEEEEEcC-CCcc---cc-cccCeEEEEECCCCCcccccccEEEEecCCCccccCCc
Q 004969          647 PDDHYLLGKGSGTSMFVQSLR-GDPF---RD-FNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQ  711 (721)
Q Consensus       647 pdg~~Lasgs~Dg~I~VWDl~-g~~l---~~-~~~~V~~v~fsP~~~~~~v~v~lLASgs~~~ke~s~~~  711 (721)
                      ||++++++|+.||+|++|+++ |+++   ++ ..+++.++.|+|..       .++||++..--.|....
T Consensus       242 Pds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~-------~mf~sa~s~l~fw~p~~  304 (311)
T KOG1446|consen  242 PDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRY-------AMFVSASSNLVFWLPDE  304 (311)
T ss_pred             CCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCce-------eeeeecCceEEEEeccc
Confidence            999999999999999999998 4443   33 35688899999999       89998887644444443

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.87  E-value=1.5e-20  Score=195.27  Aligned_cols=243  Identities=17%  Similarity=0.233  Sum_probs=189.6

Q ss_pred             CeEEEEEeCC--CCCEEEEEECCCeEEEEECCCCeEEEEee--cCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 004969          455 RPRQFEYHPS--ISCLMVFGTLDGEIVVVNHENENIVSYIP--SFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH  530 (721)
Q Consensus       455 ~V~~lafsP~--dg~~LasGs~DG~I~IWdl~tg~~i~~l~--~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~  530 (721)
                      ++.+++|.-.  ....+++++.|.++++|.++.+...-...  ..||..+|-+|.-. .++..+++||.|.+|+||+...
T Consensus       146 ~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~-~sgtr~~SgS~D~~lkiWs~~~  224 (423)
T KOG0313|consen  146 PIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVD-SSGTRFCSGSWDTMLKIWSVET  224 (423)
T ss_pred             ceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEec-CCCCeEEeecccceeeecccCC
Confidence            5776777552  23469999999999999998776543222  23999999999987 7899999999999999999433


Q ss_pred             CCC-cc--------------cccccCcceeEe-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCC
Q 004969          531 MPP-SI--------------RGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKE  594 (721)
Q Consensus       531 ~~~-~~--------------~~~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~  594 (721)
                      ... .+              .......+.+.+ .|..+|.+|.|.+ ...+++++.|.+|+.||+.++..+.++.  ...
T Consensus       225 ~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~--~~k  301 (423)
T KOG0313|consen  225 DEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT--TNK  301 (423)
T ss_pred             CccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeee--cCc
Confidence            111 00              000111223333 4668899999955 8899999999999999999999998887  577


Q ss_pred             CeEEEEEcCCCCcEEEEEECCCcEEEEECCCCC-ceeEEEecCCCCeE-EEEEecCC-CEEEEEeCCCcEEEEEcCCC--
Q 004969          595 HINVVKFSNHSPSIFATSSFDQDVKLWDLRQKP-IQPCYTASSSKGNV-MVCFSPDD-HYLLGKGSGTSMFVQSLRGD--  669 (721)
Q Consensus       595 ~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~-~~~~~~~~~~~~~v-sl~fSpdg-~~Lasgs~Dg~I~VWDl~g~--  669 (721)
                      ..+++..+|.. .++++|+.|..||+||.|++. ....+++.+|..++ ++.|+|.. ..|++|+.|+++++||+|..  
T Consensus       302 sl~~i~~~~~~-~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~  380 (423)
T KOG0313|consen  302 SLNCISYSPLS-KLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKA  380 (423)
T ss_pred             ceeEeeccccc-ceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCC
Confidence            89999999988 899999999999999999863 34467888999999 89999965 56688999999999999932  


Q ss_pred             c---ccccccCeEEEEECCCCCcccccccEEEEecCCCccccCC
Q 004969          670 P---FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHG  710 (721)
Q Consensus       670 ~---l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~~ke~s~~  710 (721)
                      |   +.+|...|.++.|...        ..|+|||...+-..+.
T Consensus       381 plydI~~h~DKvl~vdW~~~--------~~IvSGGaD~~l~i~~  416 (423)
T KOG0313|consen  381 PLYDIAGHNDKVLSVDWNEG--------GLIVSGGADNKLRIFK  416 (423)
T ss_pred             cceeeccCCceEEEEeccCC--------ceEEeccCcceEEEec
Confidence            3   5567889999999865        4789998875544443

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.87  E-value=2.6e-20  Score=188.75  Aligned_cols=235  Identities=16%  Similarity=0.220  Sum_probs=180.5

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCC-CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHEN-ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~t-g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~  533 (721)
                      .|.+|+|||+...++++|+.||+||+|+++. |..+... ...|.++|.+++|+ .++..+++|+.|+.+++||+.+++.
T Consensus        29 sIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka-~~~~~~PvL~v~Ws-ddgskVf~g~~Dk~~k~wDL~S~Q~  106 (347)
T KOG0647|consen   29 SISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKA-QQSHDGPVLDVCWS-DDGSKVFSGGCDKQAKLWDLASGQV  106 (347)
T ss_pred             chheeEeccccCceEEecccCCceEEEEEecCCcccchh-hhccCCCeEEEEEc-cCCceEEeeccCCceEEEEccCCCe
Confidence            4889999998888899999999999999986 4544432 23789999999998 8999999999999999999999754


Q ss_pred             cccccccCcceeEeccCCCeEEEEEecCCC--EEEEEeCCCcEEEEECCCCcEEEEEcc---------------------
Q 004969          534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDE--LFLASGYSKNIALYDINSGRRLQVFAD---------------------  590 (721)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~--~lls~g~Dg~IrlWDl~s~~~v~~l~~---------------------  590 (721)
                                ...-.|..+|..++|-+...  .+++|+.|++|+.||.++..++.++.-                     
T Consensus       107 ----------~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r  176 (347)
T KOG0647|consen  107 ----------SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAER  176 (347)
T ss_pred             ----------eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCC
Confidence                      22334778899999977665  789999999999999998776654430                     


Q ss_pred             -------------------ccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCC------C---eE-
Q 004969          591 -------------------MHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSK------G---NV-  641 (721)
Q Consensus       591 -------------------~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~------~---~v-  641 (721)
                                         .-+-.+.||+..++. ...+.|+-.|.+-|..+..+....-+++..|.      +   .+ 
T Consensus       177 ~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~-~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVN  255 (347)
T KOG0647|consen  177 HIAVYNLENPPTEFKRIESPLKWQTRCVACFQDK-DGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVN  255 (347)
T ss_pred             cEEEEEcCCCcchhhhhcCcccceeeEEEEEecC-CceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEec
Confidence                               002236677777766 45677888888888777664333334443333      1   23 


Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEEcCCC----cccccccCeEEEEECCCCCcccccccEEEEecCCCccccCCc
Q 004969          642 MVCFSPDDHYLLGKGSGTSMFVQSLRGD----PFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQ  711 (721)
Q Consensus       642 sl~fSpdg~~Lasgs~Dg~I~VWDl~g~----~l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~~ke~s~~~  711 (721)
                      +++|+|.-..|+|+|.||++.+||-..+    ....+..+|.+..|+.+|       .++|-+-+-  +|+.+-
T Consensus       256 si~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G-------~ifaYA~gY--DWSkGh  320 (347)
T KOG0647|consen  256 SIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNG-------SIFAYALGY--DWSKGH  320 (347)
T ss_pred             ceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCC-------CEEEEEeec--cccccc
Confidence            7999999999999999999999997632    234567899999999999       888887776  666553

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.87  E-value=2e-20  Score=196.99  Aligned_cols=231  Identities=19%  Similarity=0.184  Sum_probs=193.2

Q ss_pred             CccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 004969          452 RSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM  531 (721)
Q Consensus       452 ~~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~  531 (721)
                      +...|+.+.|+| +...+++++.|-.|+||............  .|..+|+.+.-+ +.+++|++++.||+..+.|++++
T Consensus       260 h~kki~~v~~~~-~~~~v~~aSad~~i~vws~~~~s~~~~~~--~h~~~V~~ls~h-~tgeYllsAs~d~~w~Fsd~~~g  335 (506)
T KOG0289|consen  260 HTKKITSVKFHK-DLDTVITASADEIIRVWSVPLSSEPTSSR--PHEEPVTGLSLH-PTGEYLLSASNDGTWAFSDISSG  335 (506)
T ss_pred             cceEEEEEEecc-chhheeecCCcceEEeeccccccCccccc--cccccceeeeec-cCCcEEEEecCCceEEEEEccCC
Confidence            334689999999 88999999999999999998776555555  899999999988 78999999999999999999997


Q ss_pred             CCcccccccCcceeEec-cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEE
Q 004969          532 PPSIRGMHYGAGTVTFD-EFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFA  610 (721)
Q Consensus       532 ~~~~~~~~~~~~~~~~~-~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLa  610 (721)
                      .....        +.-. ..-.+++.+|||+|-.|.+|..||.+++||+.++..+..|.+ |.++|..|+|+.+| ++++
T Consensus       336 ~~lt~--------vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpg-ht~~vk~i~FsENG-Y~La  405 (506)
T KOG0289|consen  336 SQLTV--------VSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPG-HTGPVKAISFSENG-YWLA  405 (506)
T ss_pred             cEEEE--------EeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCC-CCCceeEEEeccCc-eEEE
Confidence            65211        1111 112479999999999999999999999999999999999998 99999999999999 9999


Q ss_pred             EEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCC------cccccccCeEEEEEC
Q 004969          611 TSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGD------PFRDFNMSILAAYTR  684 (721)
Q Consensus       611 Sgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~------~l~~~~~~V~~v~fs  684 (721)
                      +++.|+.|++||+|..+..+.+.+....+..++.|.+.|.||+.++.|=.|++++-..+      .+..|.+....+.|.
T Consensus       406 t~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg  485 (506)
T KOG0289|consen  406 TAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFG  485 (506)
T ss_pred             EEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeec
Confidence            99999999999999987777777776666669999999999999988777777763322      234445577788888


Q ss_pred             CCCCcccccccEEEEecCC
Q 004969          685 PSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       685 P~~~~~~v~v~lLASgs~~  703 (721)
                      ...       .+++++|..
T Consensus       486 ~~a-------q~l~s~smd  497 (506)
T KOG0289|consen  486 EHA-------QYLASTSMD  497 (506)
T ss_pred             ccc-------eEEeeccch
Confidence            777       889999887

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.86  E-value=5.3e-20  Score=183.77  Aligned_cols=216  Identities=17%  Similarity=0.170  Sum_probs=186.0

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      +++.+.|+. +|.+|++++.|.++.||-..+|+.+.++.  ||.++|+++... .+...+++|+.|.++++||+++++. 
T Consensus        12 plTqiKyN~-eGDLlFscaKD~~~~vw~s~nGerlGty~--GHtGavW~~Did-~~s~~liTGSAD~t~kLWDv~tGk~-   86 (327)
T KOG0643|consen   12 PLTQIKYNR-EGDLLFSCAKDSTPTVWYSLNGERLGTYD--GHTGAVWCCDID-WDSKHLITGSADQTAKLWDVETGKQ-   86 (327)
T ss_pred             ccceEEecC-CCcEEEEecCCCCceEEEecCCceeeeec--CCCceEEEEEec-CCcceeeeccccceeEEEEcCCCcE-
Confidence            689999999 99999999999999999998999999998  999999999986 7889999999999999999999775 


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-----CCcEEEEECC-------CCcEEEEEccccCCCeEEEEEc
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-----SKNIALYDIN-------SGRRLQVFADMHKEHINVVKFS  602 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-----Dg~IrlWDl~-------s~~~v~~l~~~h~~~V~sI~fs  602 (721)
                               ...+....+|..+.|+..|..++++.+     .+.|.++|++       +.++...+.. +.+.++.+-|.
T Consensus        87 ---------la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t-~~skit~a~Wg  156 (327)
T KOG0643|consen   87 ---------LATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT-PDSKITSALWG  156 (327)
T ss_pred             ---------EEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC-Cccceeeeeec
Confidence                     556667778999999999999888864     4679999999       4566777775 88999999999


Q ss_pred             CCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCC-ccccc--ccCe
Q 004969          603 NHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGD-PFRDF--NMSI  678 (721)
Q Consensus       603 Pdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~-~l~~~--~~~V  678 (721)
                      |-+ ..+++|..||.|.+||.+++.. .+.....|...+ .+.++||..++++++.|.+.++||++.- .++.+  ..+|
T Consensus       157 ~l~-~~ii~Ghe~G~is~~da~~g~~-~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~Pv  234 (327)
T KOG0643|consen  157 PLG-ETIIAGHEDGSISIYDARTGKE-LVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPV  234 (327)
T ss_pred             ccC-CEEEEecCCCcEEEEEcccCce-eeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccc
Confidence            999 7999999999999999999743 233444455555 8999999999999999999999998832 23333  4689


Q ss_pred             EEEEECCCC
Q 004969          679 LAAYTRPSS  687 (721)
Q Consensus       679 ~~v~fsP~~  687 (721)
                      ++++++|..
T Consensus       235 N~aaisP~~  243 (327)
T KOG0643|consen  235 NTAAISPLL  243 (327)
T ss_pred             cceeccccc
Confidence            999999987

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=1e-20  Score=197.90  Aligned_cols=231  Identities=11%  Similarity=0.151  Sum_probs=176.2

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeE---EEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENI---VSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM  531 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~---i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~  531 (721)
                      .|+-+.||+ +|+++|+|+.|.+..||.+.....   .+++.  +|..+|.-+.|+ |+.++|++|+.|..+.+||+.++
T Consensus       226 EVWfl~FS~-nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlv--gh~~~V~yi~wS-PDdryLlaCg~~e~~~lwDv~tg  301 (519)
T KOG0293|consen  226 EVWFLQFSH-NGKYLASASKDSTAIIWIVVYDVHFKLKKTLV--GHSQPVSYIMWS-PDDRYLLACGFDEVLSLWDVDTG  301 (519)
T ss_pred             cEEEEEEcC-CCeeEeeccCCceEEEEEEecCcceeeeeeee--cccCceEEEEEC-CCCCeEEecCchHheeeccCCcc
Confidence            699999999 999999999999999999764433   45555  999999999999 78899999999999999999998


Q ss_pred             CCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEE
Q 004969          532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFAT  611 (721)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaS  611 (721)
                      ........+        +...+.+.+|.|++..+++|+.|+++..||+. |......++.....|.+++..+|| ..+++
T Consensus       302 d~~~~y~~~--------~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dg-k~vl~  371 (519)
T KOG0293|consen  302 DLRHLYPSG--------LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDG-KYVLL  371 (519)
T ss_pred             hhhhhcccC--------cCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCC-cEEEE
Confidence            752111111        12467999999999999999999999999998 555566665445679999999999 67777


Q ss_pred             EECCCcEEEEECCCCCceeE---------EEe------------------------------cCCCC---eEEEEEec-C
Q 004969          612 SSFDQDVKLWDLRQKPIQPC---------YTA------------------------------SSSKG---NVMVCFSP-D  648 (721)
Q Consensus       612 gs~DgtIrIWDlrs~~~~~~---------~~~------------------------------~~~~~---~vsl~fSp-d  648 (721)
                      .+.|..|++|+..+.....+         +.+                              .||..   .+.-+|-. +
T Consensus       372 v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~  451 (519)
T KOG0293|consen  372 VTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGN  451 (519)
T ss_pred             EecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCC
Confidence            77888888888765322100         000                              11111   11233433 4


Q ss_pred             CCEEEEEeCCCcEEEEEcC-CCc---ccccccCeEEEEECCCCCcccccccEEEEecCCCc
Q 004969          649 DHYLLGKGSGTSMFVQSLR-GDP---FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDK  705 (721)
Q Consensus       649 g~~Lasgs~Dg~I~VWDl~-g~~---l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~~k  705 (721)
                      ..++++|+.|+.|+||+.. |++   +.+|...|++++|+|..+      .++||||-..+
T Consensus       452 ~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p------~m~ASasDDgt  506 (519)
T KOG0293|consen  452 DKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADP------EMFASASDDGT  506 (519)
T ss_pred             cceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCH------HHhhccCCCCe
Confidence            4677799999999999977 555   567788999999999985      78999988743

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=1.5e-20  Score=185.68  Aligned_cols=225  Identities=14%  Similarity=0.182  Sum_probs=181.1

Q ss_pred             CCCEEEEEECCCeEEEEECCCCe---EEEEeecCCCCCCeEEEEEe-eCCCCEEEEEeCCCeEEEEEcCCCCCccccccc
Q 004969          465 ISCLMVFGTLDGEIVVVNHENEN---IVSYIPSFGAMNSVLGLCWL-KKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHY  540 (721)
Q Consensus       465 dg~~LasGs~DG~I~IWdl~tg~---~i~~l~~~~H~~~V~sl~fs-p~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~  540 (721)
                      .|++||+++.|++|+|+.+.+..   .+.++.  ||.++|+.++|. |..|++|++++.||.|.||.-++++-.  ..  
T Consensus        22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~--Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~--k~--   95 (299)
T KOG1332|consen   22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELT--GHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWT--KA--   95 (299)
T ss_pred             hcceeeeecCCccEEEEEEcCCCCceeeeEec--CCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchh--hh--
Confidence            67999999999999999997644   344554  999999999994 557899999999999999999887431  11  


Q ss_pred             CcceeEeccCCCeEEEEEecCC--CEEEEEeCCCcEEEEECCCC--cEEEEEccccCCCeEEEEEcCC---C--------
Q 004969          541 GAGTVTFDEFDQLTSVHVNSMD--ELFLASGYSKNIALYDINSG--RRLQVFADMHKEHINVVKFSNH---S--------  605 (721)
Q Consensus       541 ~~~~~~~~~~~~V~sv~~sp~~--~~lls~g~Dg~IrlWDl~s~--~~v~~l~~~h~~~V~sI~fsPd---g--------  605 (721)
                         ...-.|...|++++|.|.+  -.++.++.||.|.+.+.++.  -....+..+|.-.|++++|.|.   |        
T Consensus        96 ---~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~  172 (299)
T KOG1332|consen   96 ---YEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPA  172 (299)
T ss_pred             ---hhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcc
Confidence               1122466779999998864  46677778999999998864  2223333359999999999987   2        


Q ss_pred             --CcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCC----CEEEEEeCCCcEEEEEcCC-------Ccc
Q 004969          606 --PSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDD----HYLLGKGSGTSMFVQSLRG-------DPF  671 (721)
Q Consensus       606 --~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg----~~Lasgs~Dg~I~VWDl~g-------~~l  671 (721)
                        .+.|++|+.|..|+||+..++.......+.+|...+ .++|.|.-    .+|++++.||++.||..+.       ..+
T Consensus       173 ~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll  252 (299)
T KOG1332|consen  173 AKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLL  252 (299)
T ss_pred             cccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccccc
Confidence              146999999999999999987655556688999999 89999954    5899999999999998762       236


Q ss_pred             cccccCeEEEEECCCCCcccccccEEEEecCCCc
Q 004969          672 RDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDK  705 (721)
Q Consensus       672 ~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~~k  705 (721)
                      ..|...+..+.|++.+       ++||.+++.++
T Consensus       253 ~~f~~~~w~vSWS~sG-------n~LaVs~GdNk  279 (299)
T KOG1332|consen  253 EEFPDVVWRVSWSLSG-------NILAVSGGDNK  279 (299)
T ss_pred             ccCCcceEEEEEeccc-------cEEEEecCCcE
Confidence            6778889999999999       99999998865

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.86  E-value=6e-21  Score=199.95  Aligned_cols=223  Identities=19%  Similarity=0.250  Sum_probs=180.2

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .++.+.|.+ ++.++++++.|+.+++|++...+...++.  ||.+.|+++.|. .....+++|+.|.+|++||+....+.
T Consensus       221 ~it~~d~d~-~~~~~iAas~d~~~r~Wnvd~~r~~~TLs--GHtdkVt~ak~~-~~~~~vVsgs~DRtiK~WDl~k~~C~  296 (459)
T KOG0288|consen  221 NITSIDFDS-DNKHVIAASNDKNLRLWNVDSLRLRHTLS--GHTDKVTAAKFK-LSHSRVVSGSADRTIKLWDLQKAYCS  296 (459)
T ss_pred             CcceeeecC-CCceEEeecCCCceeeeeccchhhhhhhc--ccccceeeehhh-ccccceeeccccchhhhhhhhhhhee
Confidence            489999999 88999999999999999999999999988  899999999997 55555999999999999999985552


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF  614 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~  614 (721)
                      ...+          ....+..+..+  ...+++|..|+.||+||++++.++.....  .+.|+++..+++| ..+.+++.
T Consensus       297 kt~l----------~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~--gg~vtSl~ls~~g-~~lLsssR  361 (459)
T KOG0288|consen  297 KTVL----------PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPL--GGRVTSLDLSMDG-LELLSSSR  361 (459)
T ss_pred             cccc----------ccccccceEec--ceeeeecccccceEEEeccCCceeeEeec--CcceeeEeeccCC-eEEeeecC
Confidence            2111          12334555553  56677777899999999999999999884  4599999999999 78888899


Q ss_pred             CCcEEEEECCCCCceeEEEecCC---CCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCccc----cc--ccCeEEEEECC
Q 004969          615 DQDVKLWDLRQKPIQPCYTASSS---KGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFR----DF--NMSILAAYTRP  685 (721)
Q Consensus       615 DgtIrIWDlrs~~~~~~~~~~~~---~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~----~~--~~~V~~v~fsP  685 (721)
                      |.++.+.|+++......+...+.   ..+..+.|||++.|+++|+.||.|+||++.+..+.    .-  ...|.+++|+|
T Consensus       362 Ddtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~  441 (459)
T KOG0288|consen  362 DDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP  441 (459)
T ss_pred             CCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcC
Confidence            99999999999876655554332   23447999999999999999999999999844321    11  22699999999


Q ss_pred             CCCcccccccEEEEecCC
Q 004969          686 SSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       686 ~~~~~~v~v~lLASgs~~  703 (721)
                      .|       .-|++++..
T Consensus       442 sG-------~~Llsadk~  452 (459)
T KOG0288|consen  442 SG-------SGLLSADKQ  452 (459)
T ss_pred             CC-------chhhcccCC
Confidence            99       666666664

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.86  E-value=9.5e-21  Score=210.16  Aligned_cols=198  Identities=13%  Similarity=0.167  Sum_probs=171.4

Q ss_pred             cCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeE-----E--EEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEE
Q 004969          454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENI-----V--SYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLY  526 (721)
Q Consensus       454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~-----i--~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIW  526 (721)
                      ..|.+++++.-...+++++|.|+++++|++...+.     +  .......|...|++|+.+ ++..+++|||.|.+.+||
T Consensus       412 ~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia-~ndkLiAT~SqDktaKiW  490 (775)
T KOG0319|consen  412 NSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIA-PNDKLIATGSQDKTAKIW  490 (775)
T ss_pred             cccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEec-CCCceEEecccccceeee
Confidence            36889999886778999999999999999975221     1  111235899999999998 678999999999999999


Q ss_pred             EcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCC
Q 004969          527 DIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSP  606 (721)
Q Consensus       527 Di~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~  606 (721)
                      +++.... .        .+-..|...|.+|.|++.++.+++++.|++|+||.+.+..++++|.| |...|..+.|-.+| 
T Consensus       491 ~le~~~l-~--------~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eG-H~~aVlra~F~~~~-  559 (775)
T KOG0319|consen  491 DLEQLRL-L--------GVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEG-HTSAVLRASFIRNG-  559 (775)
T ss_pred             cccCceE-E--------EEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecC-ccceeEeeeeeeCC-
Confidence            9995332 1        22334667899999999999999999999999999999999999998 99999999999999 


Q ss_pred             cEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEE
Q 004969          607 SIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQS  665 (721)
Q Consensus       607 ~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWD  665 (721)
                      ..|++++.||-|++|++.++.|  ..++..|...+ +++-+|.+.++++|+.||.|.+|.
T Consensus       560 ~qliS~~adGliKlWnikt~eC--~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  560 KQLISAGADGLIKLWNIKTNEC--EMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             cEEEeccCCCcEEEEeccchhh--hhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence            7999999999999999999966  66778888887 999999999999999999999995

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.85  E-value=1.9e-20  Score=188.88  Aligned_cols=202  Identities=23%  Similarity=0.339  Sum_probs=168.0

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe------------E-EEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN------------I-VSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG  521 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~------------~-i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DG  521 (721)
                      .|.++...+..|.++++|+.||.|.|||+++-.            + +..-...+|.-+|.++.|.|.+...+.++|-|.
T Consensus        45 svNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDh  124 (397)
T KOG4283|consen   45 SVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDH  124 (397)
T ss_pred             ccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccc
Confidence            588999999999999999999999999997532            1 111122478889999999999999999999999


Q ss_pred             eEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCC---CEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEE
Q 004969          522 SLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD---ELFLASGYSKNIALYDINSGRRLQVFADMHKEHINV  598 (721)
Q Consensus       522 tVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~---~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~s  598 (721)
                      +++|||.++-+.          .+.|..++.|++-+++|-.   ..+++|..|-.|++.|+.+|...+++.| |.+.|.+
T Consensus       125 tlKVWDtnTlQ~----------a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsG-Hr~~vla  193 (397)
T KOG4283|consen  125 TLKVWDTNTLQE----------AVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSG-HRDGVLA  193 (397)
T ss_pred             eEEEeeccccee----------eEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecc-ccCceEE
Confidence            999999999543          6677778888988888743   3555566788899999999999999998 9999999


Q ss_pred             EEEcCCCCcEEEEEECCCcEEEEECCCC-Cce-----------eE-EEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEE
Q 004969          599 VKFSNHSPSIFATSSFDQDVKLWDLRQK-PIQ-----------PC-YTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQ  664 (721)
Q Consensus       599 I~fsPdg~~lLaSgs~DgtIrIWDlrs~-~~~-----------~~-~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VW  664 (721)
                      +.|+|.....|+||+.||.||+||+|.. .+.           +. ..-..|.+.+ .++|+.+|.++++.+.|..+++|
T Consensus       194 V~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~w  273 (397)
T KOG4283|consen  194 VEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVW  273 (397)
T ss_pred             EEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEe
Confidence            9999999889999999999999999863 111           11 1233455566 89999999999999999999999


Q ss_pred             EcC
Q 004969          665 SLR  667 (721)
Q Consensus       665 Dl~  667 (721)
                      +..
T Consensus       274 n~~  276 (397)
T KOG4283|consen  274 NME  276 (397)
T ss_pred             ecc
Confidence            976

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=4.2e-21  Score=213.71  Aligned_cols=230  Identities=19%  Similarity=0.238  Sum_probs=177.8

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCC---CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHEN---ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM  531 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~t---g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~  531 (721)
                      .+..+.|+.-+.++||+++..|.|.+||+..   .+.+..+.  .|...|+++.|++..+.+|+|||.||+|++||++..
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~--EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~  166 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFN--EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK  166 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhh--hhccceeeeeeccCCccEEEecCCCceEEEEeeecc
Confidence            3556788876889999999999999999986   33334444  899999999999999999999999999999999986


Q ss_pred             CCcccccccCcceeEeccCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCC-cEEEEEccccCCCeEEEEEcCCCCcEE
Q 004969          532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD-ELFLASGYSKNIALYDINSG-RRLQVFADMHKEHINVVKFSNHSPSIF  609 (721)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~-~~lls~g~Dg~IrlWDl~s~-~~v~~l~~~h~~~V~sI~fsPdg~~lL  609 (721)
                      +..         ...+.....|..|.|+|.. ..|+++.+.|.+++||+|.. ++...+.. |.++|.++.|+|++ .+|
T Consensus       167 ~S~---------~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~A-H~GpV~c~nwhPnr-~~l  235 (839)
T KOG0269|consen  167 KSK---------STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTA-HNGPVLCLNWHPNR-EWL  235 (839)
T ss_pred             ccc---------ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhc-ccCceEEEeecCCC-cee
Confidence            542         1122234568999999875 55666667799999999964 45566664 99999999999988 899


Q ss_pred             EEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEE-E--eCCCcEEEEEcCC-----CcccccccCeEEE
Q 004969          610 ATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLG-K--GSGTSMFVQSLRG-----DPFRDFNMSILAA  681 (721)
Q Consensus       610 aSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Las-g--s~Dg~I~VWDl~g-----~~l~~~~~~V~~v  681 (721)
                      ||||.|+.|+|||+.+.+..+..++........++|-|..++.++ +  ..|-.|+|||++.     ..+..|...+..+
T Consensus       236 ATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i  315 (839)
T KOG0269|consen  236 ATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGI  315 (839)
T ss_pred             eecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccce
Confidence            999999999999999877666766654444448999998876554 3  2477999999983     2244556788888


Q ss_pred             EECCCCCcccccccEEEEecCC
Q 004969          682 YTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       682 ~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      +|.....      ..+-+|+..
T Consensus       316 ~W~~~d~------~~l~s~sKD  331 (839)
T KOG0269|consen  316 AWDSGDR------INLWSCSKD  331 (839)
T ss_pred             eccCCCc------eeeEeecCc
Confidence            9965322      455555544

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.85  E-value=2.9e-20  Score=197.34  Aligned_cols=219  Identities=18%  Similarity=0.328  Sum_probs=174.7

Q ss_pred             CceeeeeccCCCCCCCCCccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeE-----EEEeecCCCCCCeEEEEEeeC
Q 004969          435 PCLHTLTVSGNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENI-----VSYIPSFGAMNSVLGLCWLKK  509 (721)
Q Consensus       435 p~~~~l~~~gh~~~~~~~~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~-----i~~l~~~~H~~~V~sl~fsp~  509 (721)
                      .+.-.+.+.||..-       =++++|++.....+++|+.|++|.+||+.....     .......+|...|..++|++.
T Consensus       166 ~~~Pdl~L~gH~~e-------g~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~  238 (422)
T KOG0264|consen  166 ECRPDLRLKGHEKE-------GYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPL  238 (422)
T ss_pred             cCCCceEEEeeccc-------ccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhcccc
Confidence            44445566677772       245899999999999999999999999974322     112222499999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEE-eCCCcEEEEECCC-CcEEEE
Q 004969          510 YPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLAS-GYSKNIALYDINS-GRRLQV  587 (721)
Q Consensus       510 d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~-g~Dg~IrlWDl~s-~~~v~~  587 (721)
                      +...+++++.|+.+.|||++++..       ......-.|..+|.|++|+|.+..++++ +.|++|.+||+|+ .+++.+
T Consensus       239 h~~lF~sv~dd~~L~iwD~R~~~~-------~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~  311 (422)
T KOG0264|consen  239 HEDLFGSVGDDGKLMIWDTRSNTS-------KPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHT  311 (422)
T ss_pred             chhhheeecCCCeEEEEEcCCCCC-------CCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCcee
Confidence            999999999999999999996321       1122334567889999999988766655 5699999999997 457888


Q ss_pred             EccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCC------------CCceeEEEecCCCCeE-EEEEecCCCEE-E
Q 004969          588 FADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQ------------KPIQPCYTASSSKGNV-MVCFSPDDHYL-L  653 (721)
Q Consensus       588 l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs------------~~~~~~~~~~~~~~~v-sl~fSpdg~~L-a  653 (721)
                      +.+ |...|.+|.|+|+...++|+++.|+.+.|||+..            +....++...||...| .+.|+|+..++ +
T Consensus       312 ~e~-H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~  390 (422)
T KOG0264|consen  312 FEG-HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIA  390 (422)
T ss_pred             ccC-CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEE
Confidence            887 9999999999999989999999999999999864            2233467778888888 79999988765 5


Q ss_pred             EEeCCCcEEEEEcCC
Q 004969          654 GKGSGTSMFVQSLRG  668 (721)
Q Consensus       654 sgs~Dg~I~VWDl~g  668 (721)
                      +.+.|+.+.||....
T Consensus       391 SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  391 SVAEDNILQIWQMAE  405 (422)
T ss_pred             EecCCceEEEeeccc
Confidence            668899999999873

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.85  E-value=5.2e-20  Score=212.41  Aligned_cols=236  Identities=19%  Similarity=0.222  Sum_probs=177.9

Q ss_pred             CeEEEEEeCCCCCEEEEEE--CCCeEEEEECCC------------CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC
Q 004969          455 RPRQFEYHPSISCLMVFGT--LDGEIVVVNHEN------------ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN  520 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs--~DG~I~IWdl~t------------g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D  520 (721)
                      +|.+++.+| ++..+++|+  .||.++||+.+.            .+.+.+..  .|.+.|+|+.|+ +++.+||+||+|
T Consensus        15 ~IfSIdv~p-dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~--~h~~sv~CVR~S-~dG~~lAsGSDD   90 (942)
T KOG0973|consen   15 SIFSIDVHP-DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMD--DHDGSVNCVRFS-PDGSYLASGSDD   90 (942)
T ss_pred             eEEEEEecC-CceeEecCCccccccceeeccccccchhhhhhcccchhheeec--cccCceeEEEEC-CCCCeEeeccCc
Confidence            489999999 999999999  899999998652            11223333  799999999998 899999999999


Q ss_pred             CeEEEEEcCCC-CCcc-------cccccCccee-EeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccc
Q 004969          521 GSLKLYDIRHM-PPSI-------RGMHYGAGTV-TFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADM  591 (721)
Q Consensus       521 GtVrIWDi~~~-~~~~-------~~~~~~~~~~-~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~  591 (721)
                      +.|.||..... ....       .......... -..|...|..++|+|++.+++++|.|++|.+|+.++.+.+..+.+ 
T Consensus        91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~-  169 (942)
T KOG0973|consen   91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRG-  169 (942)
T ss_pred             ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeec-
Confidence            99999998841 1000       1111111222 234778899999999999999999999999999999999999997 


Q ss_pred             cCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEec-----CCCCeEEEEEecCCCEEE-------------
Q 004969          592 HKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTAS-----SSKGNVMVCFSPDDHYLL-------------  653 (721)
Q Consensus       592 h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~-----~~~~~vsl~fSpdg~~La-------------  653 (721)
                      |.+.|-.+.|.|-| ++||+-+.|++|+||++.+.......+-+     ...-...+.|||||++|+             
T Consensus       170 H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~  248 (942)
T KOG0973|consen  170 HQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIA  248 (942)
T ss_pred             ccccccceEECCcc-CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeE
Confidence            99999999999999 89999999999999997653221111100     001111455555555555             


Q ss_pred             --------------------------------------------------EEeCCCcEEEEEcC-CCccc----ccccCe
Q 004969          654 --------------------------------------------------GKGSGTSMFVQSLR-GDPFR----DFNMSI  678 (721)
Q Consensus       654 --------------------------------------------------sgs~Dg~I~VWDl~-g~~l~----~~~~~V  678 (721)
                                                                        +|+.|++|.||... .+|+-    -+..+|
T Consensus       249 IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI  328 (942)
T KOG0973|consen  249 IIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSI  328 (942)
T ss_pred             EEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCce
Confidence                                                              78999999999975 34422    236799


Q ss_pred             EEEEECCCCCcccccccEEEEecCC
Q 004969          679 LAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       679 ~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      ..+.|+|+|       ..|..||..
T Consensus       329 ~DmsWspdG-------~~LfacS~D  346 (942)
T KOG0973|consen  329 VDMSWSPDG-------FSLFACSLD  346 (942)
T ss_pred             eeeeEcCCC-------CeEEEEecC
Confidence            999999999       666666654

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.84  E-value=1.1e-19  Score=201.85  Aligned_cols=229  Identities=18%  Similarity=0.250  Sum_probs=184.6

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI  535 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~  535 (721)
                      +.+..|.| .+.++++|...|.+.+||+.+...+.+++  +|.+.|++++.+ +++..+++||.|.+|++||..-...  
T Consensus       415 ~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~l~Eti~--AHdgaIWsi~~~-pD~~g~vT~saDktVkfWdf~l~~~--  488 (888)
T KOG0306|consen  415 ILASKFVP-GDRYIVLGTKNGELQVFDLASASLVETIR--AHDGAIWSISLS-PDNKGFVTGSADKTVKFWDFKLVVS--  488 (888)
T ss_pred             EEEEEecC-CCceEEEeccCCceEEEEeehhhhhhhhh--ccccceeeeeec-CCCCceEEecCCcEEEEEeEEEEec--
Confidence            44455555 45555555555555555555555444444  899999999987 7899999999999999999864211  


Q ss_pred             cccccCc-------ceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcE
Q 004969          536 RGMHYGA-------GTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSI  608 (721)
Q Consensus       536 ~~~~~~~-------~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~l  608 (721)
                        ..+..       ....+.-.+.|.|+.++|++.+++++--|.+|++|-+.+-+...++.| |.-+|.|+.++||+ .+
T Consensus       489 --~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYG-HkLPV~smDIS~DS-kl  564 (888)
T KOG0306|consen  489 --VPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYG-HKLPVLSMDISPDS-KL  564 (888)
T ss_pred             --cCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecc-cccceeEEeccCCc-Ce
Confidence              11111       112444567899999999999999999999999999999999899997 99999999999999 89


Q ss_pred             EEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC----CCcccccccCeEEEEE
Q 004969          609 FATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR----GDPFRDFNMSILAAYT  683 (721)
Q Consensus       609 LaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~----g~~l~~~~~~V~~v~f  683 (721)
                      ++|||.|..|+||-+.-|.|  ...+.+|...+ ++.|-|....++++|.|+.|+-||-.    -..+.+|...|.+++.
T Consensus       565 ivTgSADKnVKiWGLdFGDC--HKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav  642 (888)
T KOG0306|consen  565 IVTGSADKNVKIWGLDFGDC--HKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAV  642 (888)
T ss_pred             EEeccCCCceEEeccccchh--hhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEE
Confidence            99999999999999998866  45667777776 99999999999999999999999855    2356788899999999


Q ss_pred             CCCCCcccccccEEEEecCC
Q 004969          684 RPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       684 sP~~~~~~v~v~lLASgs~~  703 (721)
                      +|+|       .+++|+|+.
T Consensus       643 ~~~G-------~~vvs~shD  655 (888)
T KOG0306|consen  643 SPNG-------SFVVSSSHD  655 (888)
T ss_pred             cCCC-------CeEEeccCC
Confidence            9999       899999986

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=1.5e-19  Score=193.15  Aligned_cols=199  Identities=16%  Similarity=0.249  Sum_probs=168.5

Q ss_pred             CccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 004969          452 RSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM  531 (721)
Q Consensus       452 ~~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~  531 (721)
                      +..+|..+.|+|+++..+++|++|+.+++||+.+......+.  +|++.|.+.+|+|.++..++|||.||+|++||++..
T Consensus       109 h~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~--~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~  186 (487)
T KOG0310|consen  109 HQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELS--GHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSL  186 (487)
T ss_pred             ccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEec--CCcceeEeeccccCCCeEEEecCCCceEEEEEeccC
Confidence            344688899999999999999999999999999887644554  999999999999888889999999999999999984


Q ss_pred             CCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcE-EEEEccccCCCeEEEEEcCCCCcEEE
Q 004969          532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRR-LQVFADMHKEHINVVKFSNHSPSIFA  610 (721)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~-v~~l~~~h~~~V~sI~fsPdg~~lLa  610 (721)
                      .         .....+.|..+|.++.+-|.|..|+++|. ..|++||+.+|.. +..+.. |...|+|+.+..++ ..|+
T Consensus       187 ~---------~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~-H~KtVTcL~l~s~~-~rLl  254 (487)
T KOG0310|consen  187 T---------SRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFN-HNKTVTCLRLASDS-TRLL  254 (487)
T ss_pred             C---------ceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhc-ccceEEEEEeecCC-ceEe
Confidence            2         34678888899999999898888888774 6799999996554 444444 99999999999988 8999


Q ss_pred             EEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004969          611 TSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSL  666 (721)
Q Consensus       611 Sgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl  666 (721)
                      +|+-|+.|++||+.+-+.  ++.+.-..+..+++.+|+++.++.|-.+|.+.+=+.
T Consensus       255 S~sLD~~VKVfd~t~~Kv--v~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~  308 (487)
T KOG0310|consen  255 SGSLDRHVKVFDTTNYKV--VHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRR  308 (487)
T ss_pred             ecccccceEEEEccceEE--EEeeecccceeeEEecCCCceEEEecccceeeeehh
Confidence            999999999999776543  555555556669999999999999999998876643

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.84  E-value=1.2e-20  Score=191.86  Aligned_cols=230  Identities=13%  Similarity=0.195  Sum_probs=193.6

Q ss_pred             cCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969          454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~  533 (721)
                      -+|.|+.|+. |..++|+|+.||.|+||.+.+|.+++.+.. +|...|+++.|+ .++..+++++.|.++|+..+..++.
T Consensus       264 ~aVlci~FSR-DsEMlAsGsqDGkIKvWri~tG~ClRrFdr-AHtkGvt~l~FS-rD~SqiLS~sfD~tvRiHGlKSGK~  340 (508)
T KOG0275|consen  264 DAVLCISFSR-DSEMLASGSQDGKIKVWRIETGQCLRRFDR-AHTKGVTCLSFS-RDNSQILSASFDQTVRIHGLKSGKC  340 (508)
T ss_pred             cceEEEeecc-cHHHhhccCcCCcEEEEEEecchHHHHhhh-hhccCeeEEEEc-cCcchhhcccccceEEEeccccchh
Confidence            3699999999 999999999999999999999999988864 899999999998 8899999999999999999999876


Q ss_pred             cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcc-ccCCCeEEEEEcCCCCcEEEEE
Q 004969          534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD-MHKEHINVVKFSNHSPSIFATS  612 (721)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~-~h~~~V~sI~fsPdg~~lLaSg  612 (721)
                       ++...+        |...|+.+.|.++|..+++++.||+|++|+..+++++.+|+. +...+|+++..-|..+..++++
T Consensus       341 -LKEfrG--------HsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVC  411 (508)
T KOG0275|consen  341 -LKEFRG--------HSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVC  411 (508)
T ss_pred             -HHHhcC--------ccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEE
Confidence             233333        335578899999999999999999999999999999999884 2456899999999998999999


Q ss_pred             ECCCcEEEEECCCCCceeEEE-ecC-CCCeEEEEEecCCCEEEEEeCCCcEEEEEcC-CC---cccccccCeEEEEECCC
Q 004969          613 SFDQDVKLWDLRQKPIQPCYT-ASS-SKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR-GD---PFRDFNMSILAAYTRPS  686 (721)
Q Consensus       613 s~DgtIrIWDlrs~~~~~~~~-~~~-~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~-g~---~l~~~~~~V~~v~fsP~  686 (721)
                      ...++|.|.++... ....+. ... ....++.+.||.|.|+++.+.|+.++.|.+. |.   .+..|+..|..++-||.
T Consensus       412 Nrsntv~imn~qGQ-vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPH  490 (508)
T KOG0275|consen  412 NRSNTVYIMNMQGQ-VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPH  490 (508)
T ss_pred             cCCCeEEEEeccce-EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcc
Confidence            99999999998764 222222 111 2334588999999999999999999999976 32   34556778999999999


Q ss_pred             CCcccccccEEEEecCC
Q 004969          687 SKSEIVKVNLLASTDHC  703 (721)
Q Consensus       687 ~~~~~v~v~lLASgs~~  703 (721)
                      .       ++||+-+..
T Consensus       491 q-------NllAsYsED  500 (508)
T KOG0275|consen  491 Q-------NLLASYSED  500 (508)
T ss_pred             c-------chhhhhccc
Confidence            8       999987764

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=1.2e-19  Score=204.89  Aligned_cols=197  Identities=14%  Similarity=0.198  Sum_probs=164.6

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      -|..|.|+.  .++|++++.|.|||+|++....+++.+   .|.+-|+||+|+|.|.+++++|+-||.||||++...+. 
T Consensus       371 DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F---~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~V-  444 (712)
T KOG0283|consen  371 DILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVF---SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKV-  444 (712)
T ss_pred             hheeccccc--CCeeEeccccccEEeecCCCcceeeEE---ecCCeeEEEEecccCCCcEeecccccceEEeecCcCee-
Confidence            488899997  488999999999999999999999998   68999999999999999999999999999999987432 


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcc--------ccCCCeEEEEEcCCCC
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD--------MHKEHINVVKFSNHSP  606 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~--------~h~~~V~sI~fsPdg~  606 (721)
                               ..-....+-|+++++.|+|+..++|+.+|.+++|+....+.+..+.-        .|. .|++++|.|..+
T Consensus       445 ---------v~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~  514 (712)
T KOG0283|consen  445 ---------VDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDP  514 (712)
T ss_pred             ---------EeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCC
Confidence                     12223345699999999999999999999999999998776655431        133 799999999887


Q ss_pred             cEEEEEECCCcEEEEECCCCCceeEEEe-cCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          607 SIFATSSFDQDVKLWDLRQKPIQPCYTA-SSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       607 ~lLaSgs~DgtIrIWDlrs~~~~~~~~~-~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                      ..+++.+.|..|||||.++......+.. ......+...|+.||++|++|+.|..|+||+..
T Consensus       515 ~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~  576 (712)
T KOG0283|consen  515 DEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND  576 (712)
T ss_pred             CeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence            7788889999999999987755444432 222333578999999999999999999999984

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.84  E-value=2.4e-19  Score=203.88  Aligned_cols=206  Identities=17%  Similarity=0.281  Sum_probs=172.7

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|+++++.. .+.++++|+.|.+++|||..+|.+...+.  +|.+.|.++..   .+.++++|+.|.+|++|++.++.. 
T Consensus       251 ~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~C~~~l~--gh~stv~~~~~---~~~~~~sgs~D~tVkVW~v~n~~~-  323 (537)
T KOG0274|consen  251 GVWGLAFPS-GGDKLVSGSTDKTERVWDCSTGECTHSLQ--GHTSSVRCLTI---DPFLLVSGSRDNTVKVWDVTNGAC-  323 (537)
T ss_pred             CceeEEEec-CCCEEEEEecCCcEEeEecCCCcEEEEec--CCCceEEEEEc---cCceEeeccCCceEEEEeccCcce-
Confidence            489999987 78999999999999999999999999998  99999999985   467889999999999999997654 


Q ss_pred             ccccccCcceeEec-cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969          535 IRGMHYGAGTVTFD-EFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS  613 (721)
Q Consensus       535 ~~~~~~~~~~~~~~-~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs  613 (721)
                               ...+. |..+|.++..+  ++.+++|+.|++|++||+.++++++++.+ |...|.++.+.+.  ..+++|+
T Consensus       324 ---------l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~g-H~~~V~sl~~~~~--~~~~Sgs  389 (537)
T KOG0274|consen  324 ---------LNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSG-HTGRVYSLIVDSE--NRLLSGS  389 (537)
T ss_pred             ---------EEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecC-CcceEEEEEecCc--ceEEeee
Confidence                     23333 77889999994  89999999999999999999999999998 9999999988765  5899999


Q ss_pred             CCCcEEEEECCCC-CceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC-CCccc---c-cccCeEEEEEC
Q 004969          614 FDQDVKLWDLRQK-PIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR-GDPFR---D-FNMSILAAYTR  684 (721)
Q Consensus       614 ~DgtIrIWDlrs~-~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~l~---~-~~~~V~~v~fs  684 (721)
                      .|++|++||+++. ++  +..+.+|...+ -.....+++|++++.|+.|++||.. +...+   + +...|..+++.
T Consensus       390 ~D~~IkvWdl~~~~~c--~~tl~~h~~~v-~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~  463 (537)
T KOG0274|consen  390 LDTTIKVWDLRTKRKC--IHTLQGHTSLV-SSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG  463 (537)
T ss_pred             eccceEeecCCchhhh--hhhhcCCcccc-cccccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC
Confidence            9999999999998 55  56667777766 2334468999999999999999987 33322   2 33455555554

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.84  E-value=1.5e-18  Score=186.47  Aligned_cols=239  Identities=17%  Similarity=0.248  Sum_probs=183.6

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC----CeEEEEEcCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN----GSLKLYDIRH  530 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D----GtVrIWDi~~  530 (721)
                      .++-..|+| .|.++|+|...|+|||||......+-..+.+--.++|..++|. .++.++++.+..    |.+.+||..+
T Consensus        61 ~vtVAkySP-sG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd-~ds~RI~avGEGrerfg~~F~~DSG~  138 (603)
T KOG0318|consen   61 QVTVAKYSP-SGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWD-FDSKRIAAVGEGRERFGHVFLWDSGN  138 (603)
T ss_pred             eeEEEEeCC-CceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeC-CCCcEEEEEecCccceeEEEEecCCC
Confidence            588899999 7999999999999999998764433222222456899999998 778877776643    5677787654


Q ss_pred             CCCcccc------------------ccc---------CcceeEe-----ccCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 004969          531 MPPSIRG------------------MHY---------GAGTVTF-----DEFDQLTSVHVNSMDELFLASGYSKNIALYD  578 (721)
Q Consensus       531 ~~~~~~~------------------~~~---------~~~~~~~-----~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWD  578 (721)
                      .--.+.+                  ..+         ......|     .|..-|.++.++|+|..|+++|.||.|.+||
T Consensus       139 SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyD  218 (603)
T KOG0318|consen  139 SVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYD  218 (603)
T ss_pred             ccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEc
Confidence            2111110                  000         0011122     2445699999999999999999999999999


Q ss_pred             CCCCcEEEEEc--cccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCC--CCeEEEEEecCCCEEEE
Q 004969          579 INSGRRLQVFA--DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSS--KGNVMVCFSPDDHYLLG  654 (721)
Q Consensus       579 l~s~~~v~~l~--~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~--~~~vsl~fSpdg~~Las  654 (721)
                      -.+|+.+..+.  .+|++.|.+++|+||+ ..++|++.|.++||||+.+.++...+.+...  ..-+.+.|.  ...|++
T Consensus       219 Gktge~vg~l~~~~aHkGsIfalsWsPDs-~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lIt  295 (603)
T KOG0318|consen  219 GKTGEKVGELEDSDAHKGSIFALSWSPDS-TQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLIT  295 (603)
T ss_pred             CCCccEEEEecCCCCccccEEEEEECCCC-ceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEE
Confidence            99999999998  2499999999999999 8999999999999999999877666655443  233466776  778899


Q ss_pred             EeCCCcEEEEEcC-C---CcccccccCeEEEEECCCCCcccccccEEEEecCCCc
Q 004969          655 KGSGTSMFVQSLR-G---DPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDK  705 (721)
Q Consensus       655 gs~Dg~I~VWDl~-g---~~l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~~k  705 (721)
                      .+.+|.|.+++.. .   +.+.+|...|.++..+|++       ..|.||+....
T Consensus       296 VSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~-------~~i~SgsyDG~  343 (603)
T KOG0318|consen  296 VSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDG-------KTIYSGSYDGH  343 (603)
T ss_pred             EEcCcEEEEecccCCChhheecccccceeEEEEcCCC-------CEEEeeccCce
Confidence            9999999999876 2   2367888899999999999       78888887733

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.83  E-value=9.8e-20  Score=193.04  Aligned_cols=237  Identities=20%  Similarity=0.264  Sum_probs=182.4

Q ss_pred             CCccCeEEEEEeCCCC-CEEEEEECCCeEEEEECCCCe--EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEE
Q 004969          451 NRSFRPRQFEYHPSIS-CLMVFGTLDGEIVVVNHENEN--IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYD  527 (721)
Q Consensus       451 ~~~~~V~~lafsP~dg-~~LasGs~DG~I~IWdl~tg~--~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWD  527 (721)
                      ....+|++++|||... +++|+|...|+|-+||+.+.+  .-..+....|..+|.++.|+|.+...+++.|.||+|+.-|
T Consensus       184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D  263 (498)
T KOG4328|consen  184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQD  263 (498)
T ss_pred             ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeee
Confidence            3445899999999766 799999999999999995221  2222333489999999999999999999999999999999


Q ss_pred             cCCCCCcccccccCcceeEe-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcE-EEEEccccCCCeEEEEEcCCC
Q 004969          528 IRHMPPSIRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRR-LQVFADMHKEHINVVKFSNHS  605 (721)
Q Consensus       528 i~~~~~~~~~~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~-v~~l~~~h~~~V~sI~fsPdg  605 (721)
                      +++......        ... .....+.++.++...+.++.++.=|...+||++++.. ...+. .|...|.+|+++|-.
T Consensus       264 ~~~~i~e~v--------~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~-lh~kKI~sv~~NP~~  334 (498)
T KOG4328|consen  264 FEGNISEEV--------LSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLR-LHKKKITSVALNPVC  334 (498)
T ss_pred             ecchhhHHH--------hhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhh-hhhcccceeecCCCC
Confidence            998543111        111 1122367888888888899888877999999998765 44444 488999999999999


Q ss_pred             CcEEEEEECCCcEEEEECCCCCce--eEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC--CC---cc--ccc-
Q 004969          606 PSIFATSSFDQDVKLWDLRQKPIQ--PCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR--GD---PF--RDF-  674 (721)
Q Consensus       606 ~~lLaSgs~DgtIrIWDlrs~~~~--~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~--g~---~l--~~~-  674 (721)
                      +.++||+|.|++.+|||+|.-...  +....-.|...| +..|||.|-.|+|.+.|+.|+|||..  +.   +.  -.| 
T Consensus       335 p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn  414 (498)
T KOG4328|consen  335 PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHN  414 (498)
T ss_pred             chheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeecc
Confidence            999999999999999999974332  234445566677 89999988889999999999999984  11   11  111 


Q ss_pred             -----ccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          675 -----NMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       675 -----~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                           ..+...+.|+|+.       ++++.|-.-
T Consensus       415 ~~t~RwlT~fKA~W~P~~-------~li~vg~~~  441 (498)
T KOG4328|consen  415 NRTGRWLTPFKAAWDPDY-------NLIVVGRYP  441 (498)
T ss_pred             CcccccccchhheeCCCc-------cEEEEeccC
Confidence                 2367778999988       777777665

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.83  E-value=1.9e-19  Score=176.94  Aligned_cols=178  Identities=20%  Similarity=0.333  Sum_probs=153.3

Q ss_pred             CCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEec-cCCCeEEEEEecCCCEEEEEeCCCcE
Q 004969          496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFD-EFDQLTSVHVNSMDELFLASGYSKNI  574 (721)
Q Consensus       496 ~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~-~~~~V~sv~~sp~~~~lls~g~Dg~I  574 (721)
                      +|+++|.++.|+ -++++.++++.|.+|++|+...+..          ..++. |...|..++.+.++..|+++|.|+.|
T Consensus        15 ~~qgaV~avryN-~dGnY~ltcGsdrtvrLWNp~rg~l----------iktYsghG~EVlD~~~s~Dnskf~s~GgDk~v   83 (307)
T KOG0316|consen   15 CAQGAVRAVRYN-VDGNYCLTCGSDRTVRLWNPLRGAL----------IKTYSGHGHEVLDAALSSDNSKFASCGGDKAV   83 (307)
T ss_pred             ccccceEEEEEc-cCCCEEEEcCCCceEEeecccccce----------eeeecCCCceeeeccccccccccccCCCCceE
Confidence            788999999998 8999999999999999999988654          22332 33468999999999999999999999


Q ss_pred             EEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEE
Q 004969          575 ALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLL  653 (721)
Q Consensus       575 rlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~La  653 (721)
                      .+||+.+|+.++.|.+ |.+.|+.++|+.+. ..+++|+.|.++|+||.|+....|+..+......+ ++..  .+..|+
T Consensus        84 ~vwDV~TGkv~Rr~rg-H~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v--~~heIv  159 (307)
T KOG0316|consen   84 QVWDVNTGKVDRRFRG-HLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV--AEHEIV  159 (307)
T ss_pred             EEEEcccCeeeeeccc-ccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe--cccEEE
Confidence            9999999999999998 99999999999988 89999999999999999998888888776555555 5554  478899


Q ss_pred             EEeCCCcEEEEEcC-CCccc-ccccCeEEEEECCCCC
Q 004969          654 GKGSGTSMFVQSLR-GDPFR-DFNMSILAAYTRPSSK  688 (721)
Q Consensus       654 sgs~Dg~I~VWDl~-g~~l~-~~~~~V~~v~fsP~~~  688 (721)
                      +|+.||+++.||++ |.... -+..+|+++.|+|++.
T Consensus       160 aGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~n  196 (307)
T KOG0316|consen  160 AGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGN  196 (307)
T ss_pred             eeccCCcEEEEEeecceeehhhcCCcceeEEecCCCC
Confidence            99999999999999 44332 3367999999999993

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=2.5e-18  Score=167.90  Aligned_cols=226  Identities=15%  Similarity=0.258  Sum_probs=172.4

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCC------Ce-------EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHEN------EN-------IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG  521 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~t------g~-------~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DG  521 (721)
                      .|++++|+| .|.+.++|+...+.+|.....      +.       .+..-+...|.+.|.|.+|+ +.+.++++|+.|.
T Consensus        34 airav~fhp-~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws-~~geliatgsndk  111 (350)
T KOG0641|consen   34 AIRAVAFHP-AGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWS-PCGELIATGSNDK  111 (350)
T ss_pred             heeeEEecC-CCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEec-CccCeEEecCCCc
Confidence            589999999 999999999999999875421      11       12222234788999999998 7999999999999


Q ss_pred             eEEEEEcCCCCCccccc----ccCc--------------------------------------cee-EeccCCCeEEE-E
Q 004969          522 SLKLYDIRHMPPSIRGM----HYGA--------------------------------------GTV-TFDEFDQLTSV-H  557 (721)
Q Consensus       522 tVrIWDi~~~~~~~~~~----~~~~--------------------------------------~~~-~~~~~~~V~sv-~  557 (721)
                      +|++.-++...+.....    ..+.                                      +.. ...|.+.|.++ .
T Consensus       112 ~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalys  191 (350)
T KOG0641|consen  112 TIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYS  191 (350)
T ss_pred             eEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEE
Confidence            99998776433211100    0000                                      000 00133445444 3


Q ss_pred             EecCCCEEEEEeCCCcEEEEECCCCcEEEEEcc------ccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeE
Q 004969          558 VNSMDELFLASGYSKNIALYDINSGRRLQVFAD------MHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPC  631 (721)
Q Consensus       558 ~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~------~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~  631 (721)
                      |  ++-.|++|+.|.+||+||++-..++.++..      ...+.|.+++..|.| +++++|-.|.+..+||+|.+..  +
T Consensus       192 w--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsg-rll~sg~~dssc~lydirg~r~--i  266 (350)
T KOG0641|consen  192 W--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSG-RLLASGHADSSCMLYDIRGGRM--I  266 (350)
T ss_pred             e--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCc-ceeeeccCCCceEEEEeeCCce--e
Confidence            4  566788888999999999999888887652      124679999999999 8999999999999999999854  6


Q ss_pred             EEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCc--------ccccccCeEEEEECCCC
Q 004969          632 YTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDP--------FRDFNMSILAAYTRPSS  687 (721)
Q Consensus       632 ~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~--------l~~~~~~V~~v~fsP~~  687 (721)
                      ..+..|...+ ++.|||...|+++++.|..|++-|+.|+.        +..|+..+..+.|||+.
T Consensus       267 q~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d  331 (350)
T KOG0641|consen  267 QRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQD  331 (350)
T ss_pred             eeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCcc
Confidence            7777888887 99999999999999999999999999764        34566788889999997

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.83  E-value=4.3e-19  Score=201.88  Aligned_cols=190  Identities=19%  Similarity=0.325  Sum_probs=163.3

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEE-eecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSY-IPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~-l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      +.+..|+.   .++++|+.|++|++|+..++..+.. +.  ||.+.|+++++. ..++++++|+.|.++++||..++++.
T Consensus       211 ~~~~q~~~---~~~~~~s~~~tl~~~~~~~~~~i~~~l~--GH~g~V~~l~~~-~~~~~lvsgS~D~t~rvWd~~sg~C~  284 (537)
T KOG0274|consen  211 VLCLQLHD---GFFKSGSDDSTLHLWDLNNGYLILTRLV--GHFGGVWGLAFP-SGGDKLVSGSTDKTERVWDCSTGECT  284 (537)
T ss_pred             hhhheeec---CeEEecCCCceeEEeecccceEEEeecc--CCCCCceeEEEe-cCCCEEEEEecCCcEEeEecCCCcEE
Confidence            67788875   8899999999999999999988777 66  999999999995 57899999999999999999997762


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF  614 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~  614 (721)
                               .+...|...|.++..  ....+++|+.|.+|++|++.++..+..+.+ |.++|+++..+  + .++++|+.
T Consensus       285 ---------~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~-h~~~V~~v~~~--~-~~lvsgs~  349 (537)
T KOG0274|consen  285 ---------HSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTNGACLNLLRG-HTGPVNCVQLD--E-PLLVSGSY  349 (537)
T ss_pred             ---------EEecCCCceEEEEEc--cCceEeeccCCceEEEEeccCcceEEEecc-ccccEEEEEec--C-CEEEEEec
Confidence                     112235556677776  556777778999999999999999999998 99999999998  4 69999999


Q ss_pred             CCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004969          615 DQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGD  669 (721)
Q Consensus       615 DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~  669 (721)
                      |++|++||++++++  +..+.+|...| ++.+.+. .++++|+.|+.|++||+++.
T Consensus       350 d~~v~VW~~~~~~c--l~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~  402 (537)
T KOG0274|consen  350 DGTVKVWDPRTGKC--LKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTK  402 (537)
T ss_pred             CceEEEEEhhhcee--eeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCch
Confidence            99999999998855  77788899998 7877655 89999999999999999854

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.83  E-value=4e-20  Score=182.93  Aligned_cols=223  Identities=13%  Similarity=0.200  Sum_probs=188.3

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      +|++...+. +..+.|+++.|-+-+|||.-+|..+..+   .|..-|.+++|+ .+.++|++|+.+..+||||++..+..
T Consensus        61 avw~~~l~~-na~~aasaaadftakvw~a~tgdelhsf---~hkhivk~~af~-~ds~~lltgg~ekllrvfdln~p~Ap  135 (334)
T KOG0278|consen   61 AVWSATLNK-NATRAASAAADFTAKVWDAVTGDELHSF---EHKHIVKAVAFS-QDSNYLLTGGQEKLLRVFDLNRPKAP  135 (334)
T ss_pred             ceeeeecCc-hhhhhhhhcccchhhhhhhhhhhhhhhh---hhhheeeeEEec-ccchhhhccchHHHhhhhhccCCCCC
Confidence            588877777 7788999999999999999999998888   577889999998 89999999999999999999986654


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF  614 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~  614 (721)
                      .....+        |.+.|..+-|...+..|++++.|++||+||.++++.++++.  ...+|+++..+++|  .++|-..
T Consensus       136 p~E~~g--------htg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~--~~s~VtSlEvs~dG--~ilTia~  203 (334)
T KOG0278|consen  136 PKEISG--------HTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE--FNSPVTSLEVSQDG--RILTIAY  203 (334)
T ss_pred             chhhcC--------CCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe--cCCCCcceeeccCC--CEEEEec
Confidence            443333        44567888998899999999999999999999999999998  78899999999999  3556667


Q ss_pred             CCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC-CCc----ccccccCeEEEEECCCCCc
Q 004969          615 DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR-GDP----FRDFNMSILAAYTRPSSKS  689 (721)
Q Consensus       615 DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~----l~~~~~~V~~v~fsP~~~~  689 (721)
                      .+.|++||..+-.....+.++  ..+.+.+.+|+...+++|+.|..++.||.. |..    .++|.++|.++.|+|+|  
T Consensus       204 gssV~Fwdaksf~~lKs~k~P--~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdG--  279 (334)
T KOG0278|consen  204 GSSVKFWDAKSFGLLKSYKMP--CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDG--  279 (334)
T ss_pred             CceeEEeccccccceeeccCc--cccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCC--
Confidence            788999999986543333333  334478899999999999999999999987 222    47888999999999999  


Q ss_pred             ccccccEEEEecCC
Q 004969          690 EIVKVNLLASTDHC  703 (721)
Q Consensus       690 ~~v~v~lLASgs~~  703 (721)
                           .+.|+||..
T Consensus       280 -----E~yAsGSED  288 (334)
T KOG0278|consen  280 -----ELYASGSED  288 (334)
T ss_pred             -----ceeeccCCC
Confidence                 899999887

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.82  E-value=6.3e-19  Score=187.18  Aligned_cols=218  Identities=15%  Similarity=0.189  Sum_probs=176.6

Q ss_pred             cCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969          454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~  533 (721)
                      ..+.+++.+| |+++||+|+.|..|.||+..+.+.++.++  +|.+.|.+++|- .....+++++.|++|++|+++....
T Consensus       203 keil~~avS~-Dgkylatgg~d~~v~Iw~~~t~ehv~~~~--ghr~~V~~L~fr-~gt~~lys~s~Drsvkvw~~~~~s~  278 (479)
T KOG0299|consen  203 KEILTLAVSS-DGKYLATGGRDRHVQIWDCDTLEHVKVFK--GHRGAVSSLAFR-KGTSELYSASADRSVKVWSIDQLSY  278 (479)
T ss_pred             ceeEEEEEcC-CCcEEEecCCCceEEEecCcccchhhccc--ccccceeeeeee-cCccceeeeecCCceEEEehhHhHH
Confidence            3689999999 99999999999999999999999999887  999999999996 6778899999999999999987432


Q ss_pred             cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969          534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS  613 (721)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs  613 (721)
                       +        ...|.|++.|.++........+-+|+.|.++++|++.. +....+.+ |.+.+.|++|-.+.  .|++||
T Consensus       279 -v--------etlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg-~~~sidcv~~In~~--HfvsGS  345 (479)
T KOG0299|consen  279 -V--------ETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRG-GEGSIDCVAFINDE--HFVSGS  345 (479)
T ss_pred             -H--------HHHhCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeC-CCCCeeeEEEeccc--ceeecc
Confidence             1        22456677788888877677777777999999999953 33345555 88899999998764  899999


Q ss_pred             CCCcEEEEECCCCCceeEEEecCC----------CCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCC--ccc-----ccc
Q 004969          614 FDQDVKLWDLRQKPIQPCYTASSS----------KGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGD--PFR-----DFN  675 (721)
Q Consensus       614 ~DgtIrIWDlrs~~~~~~~~~~~~----------~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~--~l~-----~~~  675 (721)
                      .+|.|.+|++...++..+....++          ..++ +++..|....+++|+.+|.|++|-+...  .+.     .+.
T Consensus       346 dnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~  425 (479)
T KOG0299|consen  346 DNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLV  425 (479)
T ss_pred             CCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccc
Confidence            999999999998755433332211          1145 8999999999999999999999998732  222     235


Q ss_pred             cCeEEEEECCCCC
Q 004969          676 MSILAAYTRPSSK  688 (721)
Q Consensus       676 ~~V~~v~fsP~~~  688 (721)
                      +.|+++.|+++++
T Consensus       426 GfVNsl~f~~sgk  438 (479)
T KOG0299|consen  426 GFVNSLAFSNSGK  438 (479)
T ss_pred             cEEEEEEEccCCC
Confidence            6899999999993

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.82  E-value=9.3e-20  Score=199.80  Aligned_cols=226  Identities=17%  Similarity=0.239  Sum_probs=181.4

Q ss_pred             EEEEeCCCCCEEEEEECCCeEEEEECCCCe------EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 004969          458 QFEYHPSISCLMVFGTLDGEIVVVNHENEN------IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM  531 (721)
Q Consensus       458 ~lafsP~dg~~LasGs~DG~I~IWdl~tg~------~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~  531 (721)
                      ++..++..+++|++|+.||.|++|+.....      .+..++  .|..+|..+... .+++.|+|+|.|-+|++|+...+
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme--~HsDWVNDiiL~-~~~~tlIS~SsDtTVK~W~~~~~  105 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASME--HHSDWVNDIILC-GNGKTLISASSDTTVKVWNAHKD  105 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhh--hhHhHHhhHHhh-cCCCceEEecCCceEEEeecccC
Confidence            455555577889999999999999986432      244444  789999999887 78889999999999999999875


Q ss_pred             CCcccccccCcceeEeccCCCeEEEEE-ecCCCEEEEEeCCCcEEEEECCCC--cEEEEE--------ccccCCCeEEEE
Q 004969          532 PPSIRGMHYGAGTVTFDEFDQLTSVHV-NSMDELFLASGYSKNIALYDINSG--RRLQVF--------ADMHKEHINVVK  600 (721)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~-sp~~~~lls~g~Dg~IrlWDl~s~--~~v~~l--------~~~h~~~V~sI~  600 (721)
                      ..       ......-.|.+.|.++++ .++...+++||-|+.|.+||+.++  +.+..+        ..++...|++++
T Consensus       106 ~~-------~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA  178 (735)
T KOG0308|consen  106 NT-------FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLA  178 (735)
T ss_pred             cc-------hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeee
Confidence            31       111223356788999999 677788888889999999999987  333332        214888999999


Q ss_pred             EcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCC----cccccc
Q 004969          601 FSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGD----PFRDFN  675 (721)
Q Consensus       601 fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~----~l~~~~  675 (721)
                      .++.| ..+++|+..+.+++||.++.+  .+..+.+|...+ .+..++||..+++++.||+|++||+..+    ++..|.
T Consensus       179 ~N~t~-t~ivsGgtek~lr~wDprt~~--kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~  255 (735)
T KOG0308|consen  179 MNQTG-TIIVSGGTEKDLRLWDPRTCK--KIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHK  255 (735)
T ss_pred             cCCcc-eEEEecCcccceEEecccccc--ceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEecc
Confidence            99999 899999999999999999974  467778999988 8999999999999999999999999833    356667


Q ss_pred             cCeEEEEECCCCCcccccccEEEEecCC
Q 004969          676 MSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       676 ~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      ..|.++..+|.-       ..+-+|+..
T Consensus       256 e~VWaL~~~~sf-------~~vYsG~rd  276 (735)
T KOG0308|consen  256 EGVWALQSSPSF-------THVYSGGRD  276 (735)
T ss_pred             CceEEEeeCCCc-------ceEEecCCC
Confidence            779999999877       666666665

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.82  E-value=1.1e-19  Score=179.72  Aligned_cols=194  Identities=15%  Similarity=0.231  Sum_probs=166.4

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe-EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN-IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~-~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~  533 (721)
                      -|++++|+. |.++|++|+.+..++|||++..+ +...+.  +|.+.|..+.|+ ...+.++++++|++||+||.+++..
T Consensus       102 ivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~--ghtg~Ir~v~wc-~eD~~iLSSadd~tVRLWD~rTgt~  177 (334)
T KOG0278|consen  102 IVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEIS--GHTGGIRTVLWC-HEDKCILSSADDKTVRLWDHRTGTE  177 (334)
T ss_pred             eeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhc--CCCCcceeEEEe-ccCceEEeeccCCceEEEEeccCcE
Confidence            489999999 89999999999999999998654 334444  999999999999 6777888889999999999999764


Q ss_pred             cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969          534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS  613 (721)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs  613 (721)
                                +.++....+|+++.++++|. +++....+.|.+||..+-..++.+.  -...|.+...+|+. ..+++|+
T Consensus       178 ----------v~sL~~~s~VtSlEvs~dG~-ilTia~gssV~Fwdaksf~~lKs~k--~P~nV~SASL~P~k-~~fVaGg  243 (334)
T KOG0278|consen  178 ----------VQSLEFNSPVTSLEVSQDGR-ILTIAYGSSVKFWDAKSFGLLKSYK--MPCNVESASLHPKK-EFFVAGG  243 (334)
T ss_pred             ----------EEEEecCCCCcceeeccCCC-EEEEecCceeEEeccccccceeecc--CccccccccccCCC-ceEEecC
Confidence                      44556667899999987665 5556667889999999999998887  67789999999998 7999999


Q ss_pred             CCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          614 FDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       614 ~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                      .|..++.||..++...-.+ ..+|.+++ ++.|+|+|...++|+.||+|++|...
T Consensus       244 ed~~~~kfDy~TgeEi~~~-nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~  297 (334)
T KOG0278|consen  244 EDFKVYKFDYNTGEEIGSY-NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTT  297 (334)
T ss_pred             cceEEEEEeccCCceeeec-ccCCCCceEEEEECCCCceeeccCCCceEEEEEec
Confidence            9999999999998653332 47888888 99999999999999999999999976

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.82  E-value=7.7e-20  Score=195.06  Aligned_cols=166  Identities=19%  Similarity=0.387  Sum_probs=143.9

Q ss_pred             EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEE
Q 004969          488 IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLA  567 (721)
Q Consensus       488 ~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls  567 (721)
                      .+.++.  ||...|+++.|.|..+.+|++++.|+.|+||++......++...        .|..+|.+++|+..+..|++
T Consensus       206 ~~~~~~--gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~--------gH~k~Vrd~~~s~~g~~fLS  275 (503)
T KOG0282|consen  206 LSHNLS--GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFK--------GHRKPVRDASFNNCGTSFLS  275 (503)
T ss_pred             heeecc--CCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhh--------cchhhhhhhhccccCCeeee
Confidence            344554  99999999999987999999999999999999988544333322        34467899999999999999


Q ss_pred             EeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEe
Q 004969          568 SGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFS  646 (721)
Q Consensus       568 ~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fS  646 (721)
                      +|.|+.+++||.++|+.+..|.  ....++++.|+|++++.|++|+.|+.|+.||+|+++.  +.....|-+.+ .+.|-
T Consensus       276 ~sfD~~lKlwDtETG~~~~~f~--~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv--vqeYd~hLg~i~~i~F~  351 (503)
T KOG0282|consen  276 ASFDRFLKLWDTETGQVLSRFH--LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV--VQEYDRHLGAILDITFV  351 (503)
T ss_pred             eecceeeeeeccccceEEEEEe--cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH--HHHHHhhhhheeeeEEc
Confidence            9999999999999999999997  5678899999999989999999999999999999965  44455666666 89999


Q ss_pred             cCCCEEEEEeCCCcEEEEEcC
Q 004969          647 PDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       647 pdg~~Lasgs~Dg~I~VWDl~  667 (721)
                      ++|+++++++.|++++||+.+
T Consensus       352 ~~g~rFissSDdks~riWe~~  372 (503)
T KOG0282|consen  352 DEGRRFISSSDDKSVRIWENR  372 (503)
T ss_pred             cCCceEeeeccCccEEEEEcC
Confidence            999999999999999999965

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=1.3e-18  Score=185.05  Aligned_cols=225  Identities=13%  Similarity=0.176  Sum_probs=180.9

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|.|++-+| +|.+++.|+..|.|++|.+.+|..+..+.  +|-.+|+++.|+ .++.+++|||.||.|.+|.+..--..
T Consensus        83 ~v~al~s~n-~G~~l~ag~i~g~lYlWelssG~LL~v~~--aHYQ~ITcL~fs-~dgs~iiTgskDg~V~vW~l~~lv~a  158 (476)
T KOG0646|consen   83 PVHALASSN-LGYFLLAGTISGNLYLWELSSGILLNVLS--AHYQSITCLKFS-DDGSHIITGSKDGAVLVWLLTDLVSA  158 (476)
T ss_pred             ceeeeecCC-CceEEEeecccCcEEEEEeccccHHHHHH--hhccceeEEEEe-CCCcEEEecCCCccEEEEEEEeeccc
Confidence            488999999 99999999999999999999999998886  899999999998 89999999999999999998652111


Q ss_pred             ccccccCcceeEe-ccCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEE
Q 004969          535 IRGMHYGAGTVTF-DEFDQLTSVHVNSM--DELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFAT  611 (721)
Q Consensus       535 ~~~~~~~~~~~~~-~~~~~V~sv~~sp~--~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaS  611 (721)
                      .... .......| .|.-+|+++...+.  ...+++++.|.++++||+..|..+.++.  ....+.+++..|.+ +.+..
T Consensus       159 ~~~~-~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~--fp~si~av~lDpae-~~~yi  234 (476)
T KOG0646|consen  159 DNDH-SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT--FPSSIKAVALDPAE-RVVYI  234 (476)
T ss_pred             ccCC-CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe--cCCcceeEEEcccc-cEEEe
Confidence            1111 11122333 35567999888654  4789999999999999999999999887  78899999999998 89999


Q ss_pred             EECCCcEEEEECCCCC--------------ceeEEEecCCCC--eE-EEEEecCCCEEEEEeCCCcEEEEEcCCCc-cc-
Q 004969          612 SSFDQDVKLWDLRQKP--------------IQPCYTASSSKG--NV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDP-FR-  672 (721)
Q Consensus       612 gs~DgtIrIWDlrs~~--------------~~~~~~~~~~~~--~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~-l~-  672 (721)
                      |+.+|.|.+.++.+..              ......+.+|.+  .+ +++++-||..|++|+.||.+.|||+..+. ++ 
T Consensus       235 Gt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRt  314 (476)
T KOG0646|consen  235 GTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRT  314 (476)
T ss_pred             cCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHH
Confidence            9999999998875432              112334456665  55 99999999999999999999999998443 23 


Q ss_pred             --ccccCeEEEEECCCC
Q 004969          673 --DFNMSILAAYTRPSS  687 (721)
Q Consensus       673 --~~~~~V~~v~fsP~~  687 (721)
                        ...++|+.+.+.|-.
T Consensus       315 l~~~kgpVtnL~i~~~~  331 (476)
T KOG0646|consen  315 LQTSKGPVTNLQINPLE  331 (476)
T ss_pred             HhhhccccceeEeeccc
Confidence              246788888887654

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.81  E-value=6.3e-19  Score=179.08  Aligned_cols=232  Identities=14%  Similarity=0.207  Sum_probs=183.9

Q ss_pred             eccCCCCCCCCCccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC
Q 004969          441 TVSGNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN  520 (721)
Q Consensus       441 ~~~gh~~~~~~~~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D  520 (721)
                      ...||.+|       |+.++... ....+.+++.|.+.+||.+++|.++.++.  ||.+.|++++|+ +.+.++++++.|
T Consensus       143 e~~GHkDG-------iW~Vaa~~-tqpi~gtASADhTA~iWs~Esg~CL~~Y~--GH~GSVNsikfh-~s~~L~lTaSGD  211 (481)
T KOG0300|consen  143 ELEGHKDG-------IWHVAADS-TQPICGTASADHTARIWSLESGACLATYT--GHTGSVNSIKFH-NSGLLLLTASGD  211 (481)
T ss_pred             hhcccccc-------eeeehhhc-CCcceeecccccceeEEeeccccceeeec--ccccceeeEEec-cccceEEEccCC
Confidence            34577764       67777777 56689999999999999999999999998  999999999998 788999999999


Q ss_pred             CeEEEEEcCC----CCC----------cc-------c------ccccCc---ceeEe-ccCCCeEEEEEecCCCEEEEEe
Q 004969          521 GSLKLYDIRH----MPP----------SI-------R------GMHYGA---GTVTF-DEFDQLTSVHVNSMDELFLASG  569 (721)
Q Consensus       521 GtVrIWDi~~----~~~----------~~-------~------~~~~~~---~~~~~-~~~~~V~sv~~sp~~~~lls~g  569 (721)
                      ++-.||...-    .++          ..       .      ...++.   ....+ .|...|.+..|-..++.+++++
T Consensus       212 ~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaS  291 (481)
T KOG0300|consen  212 ETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTAS  291 (481)
T ss_pred             cchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeee
Confidence            9999997321    110          00       0      000010   11122 2556688888988999999999


Q ss_pred             CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecC
Q 004969          570 YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPD  648 (721)
Q Consensus       570 ~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpd  648 (721)
                      .|.+..+||+++|+++..+.| |....+.++-+|.. +++++++.|.+.|+||.|. ....+..+.+|...+ ++.|..+
T Consensus       292 WDRTAnlwDVEtge~v~~LtG-Hd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFRe-aI~sV~VFQGHtdtVTS~vF~~d  368 (481)
T KOG0300|consen  292 WDRTANLWDVETGEVVNILTG-HDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFRE-AIQSVAVFQGHTDTVTSVVFNTD  368 (481)
T ss_pred             ccccceeeeeccCceeccccC-cchhccccccCCcc-eEEEEeccCceeEeccchh-hcceeeeecccccceeEEEEecC
Confidence            999999999999999999998 99999999999998 8999999999999999995 345577788999888 7888764


Q ss_pred             CCEEEEEeCCCcEEEEEcC--CCccccc--ccCeEEEEECCCC
Q 004969          649 DHYLLGKGSGTSMFVQSLR--GDPFRDF--NMSILAAYTRPSS  687 (721)
Q Consensus       649 g~~Lasgs~Dg~I~VWDl~--g~~l~~~--~~~V~~v~fsP~~  687 (721)
                       ..+++|+.|.+|+|||++  ..++..+  ..+++.++.+...
T Consensus       369 -d~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~  410 (481)
T KOG0300|consen  369 -DRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGH  410 (481)
T ss_pred             -CceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCC
Confidence             567889999999999998  3344443  4567777777666

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.81  E-value=4.8e-18  Score=169.83  Aligned_cols=233  Identities=20%  Similarity=0.190  Sum_probs=179.3

Q ss_pred             ccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeC-----CCeEEEEE
Q 004969          453 SFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD-----NGSLKLYD  527 (721)
Q Consensus       453 ~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~-----DGtVrIWD  527 (721)
                      +-+|+|++.+- +.+++++|+.|.++++||+++|+++..++.   ..+|..+.|+ .++++++.+.+     .+.|.++|
T Consensus        52 tGavW~~Did~-~s~~liTGSAD~t~kLWDv~tGk~la~~k~---~~~Vk~~~F~-~~gn~~l~~tD~~mg~~~~v~~fd  126 (327)
T KOG0643|consen   52 TGAVWCCDIDW-DSKHLITGSADQTAKLWDVETGKQLATWKT---NSPVKRVDFS-FGGNLILASTDKQMGYTCFVSVFD  126 (327)
T ss_pred             CceEEEEEecC-CcceeeeccccceeEEEEcCCCcEEEEeec---CCeeEEEeec-cCCcEEEEEehhhcCcceEEEEEE
Confidence            34799999999 889999999999999999999999999864   4789999998 67777666543     47899999


Q ss_pred             cCCCCCcccccccCcceeE-eccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCC
Q 004969          528 IRHMPPSIRGMHYGAGTVT-FDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSP  606 (721)
Q Consensus       528 i~~~~~~~~~~~~~~~~~~-~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~  606 (721)
                      ++......   ....+... ..+.+.++.+-|.|-+..+++|..||.|..||+++|+....-...|...|+.++++|+. 
T Consensus       127 i~~~~~~~---~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~-  202 (327)
T KOG0643|consen  127 IRDDSSDI---DSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDR-  202 (327)
T ss_pred             ccCChhhh---cccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCc-
Confidence            98643211   11111222 23446799999999999999999999999999999865544433499999999999999 


Q ss_pred             cEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEE--EcC-C---------------
Q 004969          607 SIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQ--SLR-G---------------  668 (721)
Q Consensus       607 ~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VW--Dl~-g---------------  668 (721)
                      .+++|++.|.+-++||.++-..+..+.  ......+.+++|-..+++.|+.....-|=  +.+ |               
T Consensus       203 T~FiT~s~Dttakl~D~~tl~v~Kty~--te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEi  280 (327)
T KOG0643|consen  203 TYFITGSKDTTAKLVDVRTLEVLKTYT--TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEI  280 (327)
T ss_pred             ceEEecccCccceeeeccceeeEEEee--ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHh
Confidence            899999999999999999976544443  33344488999988777766544322221  111 1               


Q ss_pred             CcccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          669 DPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       669 ~~l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      ..+++|-++|++++|||+|       ...+||+..
T Consensus       281 grvkGHFGPINsvAfhPdG-------ksYsSGGED  308 (327)
T KOG0643|consen  281 GRVKGHFGPINSVAFHPDG-------KSYSSGGED  308 (327)
T ss_pred             ccccccccCcceeEECCCC-------cccccCCCC
Confidence            1366778899999999999       888888876

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.81  E-value=2.1e-19  Score=200.31  Aligned_cols=200  Identities=17%  Similarity=0.296  Sum_probs=167.8

Q ss_pred             CccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 004969          452 RSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM  531 (721)
Q Consensus       452 ~~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~  531 (721)
                      |.+.+.++.||+....+|++|++||+|++||+...+...++.  +...+|.+|+|+|..+..++++.+.|++++||++..
T Consensus       132 H~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~--~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp  209 (839)
T KOG0269|consen  132 HERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR--SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQP  209 (839)
T ss_pred             hccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccc--ccchhhhceeeccCCCceEEEecCCceEEEeeccCc
Confidence            445799999999999999999999999999999888777776  667899999999999999999999999999999986


Q ss_pred             CCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcE--EEEEccccCCCeEEEEEcCCCCcEE
Q 004969          532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRR--LQVFADMHKEHINVVKFSNHSPSIF  609 (721)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~--v~~l~~~h~~~V~sI~fsPdg~~lL  609 (721)
                      ......+.        .|.++|.++.|||++.+|++||.|++|+|||+.+++.  ..++.  ...+|.+|+|-|+.++.|
T Consensus       210 ~r~~~k~~--------AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn--Tiapv~rVkWRP~~~~hL  279 (839)
T KOG0269|consen  210 DRCEKKLT--------AHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN--TIAPVGRVKWRPARSYHL  279 (839)
T ss_pred             hhHHHHhh--------cccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe--ecceeeeeeeccCccchh
Confidence            65333322        3557889999999999999999999999999997553  44444  567899999999998899


Q ss_pred             EEEEC--CCcEEEEECCCCCceeEEEecCCCCeE-EEEEec-CCCEEEEEeCCCcEEEE
Q 004969          610 ATSSF--DQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSP-DDHYLLGKGSGTSMFVQ  664 (721)
Q Consensus       610 aSgs~--DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSp-dg~~Lasgs~Dg~I~VW  664 (721)
                      |+++.  |-.|+|||++.. ..|-.++..|...+ .++|.. |...+.+++.||.+..-
T Consensus       280 Atcsmv~dtsV~VWDvrRP-YIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh  337 (839)
T KOG0269|consen  280 ATCSMVVDTSVHVWDVRRP-YIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQH  337 (839)
T ss_pred             hhhhccccceEEEEeeccc-cccceeeeccCccccceeccCCCceeeEeecCccHHHHh
Confidence            98875  778999999974 56777888888888 788865 55677888888887543

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.81  E-value=3.1e-19  Score=186.85  Aligned_cols=207  Identities=16%  Similarity=0.238  Sum_probs=166.7

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC-
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP-  533 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~-  533 (721)
                      .|.-+.||| |.+++++++.|..+.+||+.+|.....++. +|...+.+.+|. +++..+++|+.|+++..||+++... 
T Consensus       271 ~V~yi~wSP-DdryLlaCg~~e~~~lwDv~tgd~~~~y~~-~~~~S~~sc~W~-pDg~~~V~Gs~dr~i~~wdlDgn~~~  347 (519)
T KOG0293|consen  271 PVSYIMWSP-DDRYLLACGFDEVLSLWDVDTGDLRHLYPS-GLGFSVSSCAWC-PDGFRFVTGSPDRTIIMWDLDGNILG  347 (519)
T ss_pred             ceEEEEECC-CCCeEEecCchHheeeccCCcchhhhhccc-CcCCCcceeEEc-cCCceeEecCCCCcEEEecCCcchhh
Confidence            588999999 889999999999999999999999988875 577899999999 7999999999999999999986432 


Q ss_pred             ccccc-----------ccCc---------cee-----------EeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 004969          534 SIRGM-----------HYGA---------GTV-----------TFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSG  582 (721)
Q Consensus       534 ~~~~~-----------~~~~---------~~~-----------~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~  582 (721)
                      .....           ....         ...           ......+|++++++.++.++++.-.+..+++||+...
T Consensus       348 ~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~  427 (519)
T KOG0293|consen  348 NWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN  427 (519)
T ss_pred             cccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchh
Confidence            00000           0000         000           1124467999999988888888889999999999988


Q ss_pred             cEEEEEccccCCC--eEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecC-CCEEEEEeCC
Q 004969          583 RRLQVFADMHKEH--INVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPD-DHYLLGKGSG  658 (721)
Q Consensus       583 ~~v~~l~~~h~~~--V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpd-g~~Lasgs~D  658 (721)
                      +.++.+.| |+..  +-.-+|.-....++++||.|+.|+||+.++++.  +..+.||...+ +++|+|. -.++|+|+.|
T Consensus       428 ~lv~kY~G-hkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkl--l~~LsGHs~~vNcVswNP~~p~m~ASasDD  504 (519)
T KOG0293|consen  428 KLVRKYFG-HKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKL--LAVLSGHSKTVNCVSWNPADPEMFASASDD  504 (519)
T ss_pred             hHHHHhhc-ccccceEEEeccCCCCcceEEecCCCceEEEEEccCCce--eEeecCCcceeeEEecCCCCHHHhhccCCC
Confidence            88988887 7654  334456544447999999999999999999954  77888999988 9999994 5678999999


Q ss_pred             CcEEEEEcC
Q 004969          659 TSMFVQSLR  667 (721)
Q Consensus       659 g~I~VWDl~  667 (721)
                      |+|+||...
T Consensus       505 gtIRIWg~~  513 (519)
T KOG0293|consen  505 GTIRIWGPS  513 (519)
T ss_pred             CeEEEecCC
Confidence            999999875

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=6.9e-18  Score=171.92  Aligned_cols=226  Identities=15%  Similarity=0.214  Sum_probs=175.8

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|.++.|+| .++.|++++.||.+++|++........+   .|..++++.+|.  +...+++|+-||.|+.+|+.++.. 
T Consensus        15 ~IS~v~f~~-~~~~LLvssWDgslrlYdv~~~~l~~~~---~~~~plL~c~F~--d~~~~~~G~~dg~vr~~Dln~~~~-   87 (323)
T KOG1036|consen   15 GISSVKFSP-SSSDLLVSSWDGSLRLYDVPANSLKLKF---KHGAPLLDCAFA--DESTIVTGGLDGQVRRYDLNTGNE-   87 (323)
T ss_pred             ceeeEEEcC-cCCcEEEEeccCcEEEEeccchhhhhhe---ecCCceeeeecc--CCceEEEeccCceEEEEEecCCcc-
Confidence            488999998 6677778889999999999877555555   578899999996  577899999999999999999654 


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF  614 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~  614 (721)
                               ...-.|..+|.++...+..+.+++||.|++|++||.+....+..+.  ....|.++..+  | +.|++|+.
T Consensus        88 ---------~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d--~~kkVy~~~v~--g-~~LvVg~~  153 (323)
T KOG1036|consen   88 ---------DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD--QGKKVYCMDVS--G-NRLVVGTS  153 (323)
T ss_pred             ---------eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc--cCceEEEEecc--C-CEEEEeec
Confidence                     2333566789999999999999999999999999999866666655  44578888775  3 57888888


Q ss_pred             CCcEEEEECCCCCc-------------eeE---------------------------------EEecCCC---------C
Q 004969          615 DQDVKLWDLRQKPI-------------QPC---------------------------------YTASSSK---------G  639 (721)
Q Consensus       615 DgtIrIWDlrs~~~-------------~~~---------------------------------~~~~~~~---------~  639 (721)
                      |..|.+||+|+...             ..+                                 +.+..|.         -
T Consensus       154 ~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y  233 (323)
T KOG1036|consen  154 DRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY  233 (323)
T ss_pred             CceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence            99999999886310             000                                 1111111         0


Q ss_pred             eE-EEEEecCCCEEEEEeCCCcEEEEEcC-CCccc---ccccCeEEEEECCCCCcccccccEEEEecCCCcccc
Q 004969          640 NV-MVCFSPDDHYLLGKGSGTSMFVQSLR-GDPFR---DFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECS  708 (721)
Q Consensus       640 ~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~l~---~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~~ke~s  708 (721)
                      ++ +++|+|--..++||+.||.|.+||+. .+.++   .+..+|..++|+-++       .+||.|+....+.-
T Consensus       234 PVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG-------~~LAia~sy~ye~~  300 (323)
T KOG1036|consen  234 PVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDG-------SLLAIASSYQYERA  300 (323)
T ss_pred             EeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCC-------CeEEEEechhhhcC
Confidence            23 78999999999999999999999987 33344   445679999999999       99999988644443

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.80  E-value=8e-19  Score=182.31  Aligned_cols=196  Identities=20%  Similarity=0.297  Sum_probs=156.1

Q ss_pred             EEEEEeCCCCCEEEEEECCCeEEEEECCCCeEE-EEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 004969          457 RQFEYHPSISCLMVFGTLDGEIVVVNHENENIV-SYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI  535 (721)
Q Consensus       457 ~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i-~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~  535 (721)
                      +++.|||.....+++|..-+.|++|...+|... -..+..+|..+|-.++|+|.....|+|||.||+|+|||++.+..  
T Consensus       215 y~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~--  292 (440)
T KOG0302|consen  215 YGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK--  292 (440)
T ss_pred             eeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc--
Confidence            679999976777899988899999999887653 23344589999999999999999999999999999999999754  


Q ss_pred             cccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC---CcEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969          536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINS---GRRLQVFADMHKEHINVVKFSNHSPSIFATS  612 (721)
Q Consensus       536 ~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s---~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg  612 (721)
                           ......-.|.+.|+.+.|+...+.+++|+.||+++|||+|+   ++++..|+. |..+|++|.|+|.....|+++
T Consensus       293 -----~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~-Hk~pItsieW~p~e~s~iaas  366 (440)
T KOG0302|consen  293 -----KAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKY-HKAPITSIEWHPHEDSVIAAS  366 (440)
T ss_pred             -----cceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEe-ccCCeeEEEeccccCceEEec
Confidence                 22334455777899999999989888999999999999995   678999997 999999999999987899999


Q ss_pred             ECCCcEEEEECCCCCc-----------------eeEEEecCCCCeEEEEEecCC-CEEEEEeCCCc
Q 004969          613 SFDQDVKLWDLRQKPI-----------------QPCYTASSSKGNVMVCFSPDD-HYLLGKGSGTS  660 (721)
Q Consensus       613 s~DgtIrIWDlrs~~~-----------------~~~~~~~~~~~~vsl~fSpdg-~~Lasgs~Dg~  660 (721)
                      +.|.+|.+||+.-..-                 +.++...+....--+.|+++- .++++.+.||.
T Consensus       367 g~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf  432 (440)
T KOG0302|consen  367 GEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF  432 (440)
T ss_pred             cCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence            9999999999864211                 112222222222268999865 46666666663

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.80  E-value=3.9e-18  Score=173.93  Aligned_cols=197  Identities=16%  Similarity=0.219  Sum_probs=154.1

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCC-CCEEEEEeCCCeEEEEEcCCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKY-PSKLIAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d-~~~LaSgs~DGtVrIWDi~~~~~  533 (721)
                      .+++++.+-   .++|+|+.|-+|+|||+.+......+-  .|.+.|+++.|.++- ...|++|+.||.|.+|+...-..
T Consensus        45 sitavAVs~---~~~aSGssDetI~IYDm~k~~qlg~ll--~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~  119 (362)
T KOG0294|consen   45 SITALAVSG---PYVASGSSDETIHIYDMRKRKQLGILL--SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWEL  119 (362)
T ss_pred             ceeEEEecc---eeEeccCCCCcEEEEeccchhhhccee--ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEE
Confidence            689999865   999999999999999999888877776  789999999997443 24899999999999999987422


Q ss_pred             cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcccc---------------------
Q 004969          534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMH---------------------  592 (721)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h---------------------  592 (721)
                       +..        ...|..+|+.+++||.+..-++.|.|+.+++||+-+|+.-..+.-.+                     
T Consensus       120 -~~s--------lK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~  190 (362)
T KOG0294|consen  120 -LKS--------LKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNK  190 (362)
T ss_pred             -eee--------ecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccE
Confidence             111        22355679999999999999999999999999998876544333111                     


Q ss_pred             -----------------CCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEE--EecCCCEE
Q 004969          593 -----------------KEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVC--FSPDDHYL  652 (721)
Q Consensus       593 -----------------~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~--fSpdg~~L  652 (721)
                                       ...+.++.|...  ..+++|+.|+.|++||..+.  .+...+.+|...+ .+.  -.|++.||
T Consensus       191 i~i~q~d~A~v~~~i~~~~r~l~~~~l~~--~~L~vG~d~~~i~~~D~ds~--~~~~~~~AH~~RVK~i~~~~~~~~~~l  266 (362)
T KOG0294|consen  191 IDIYQLDNASVFREIENPKRILCATFLDG--SELLVGGDNEWISLKDTDSD--TPLTEFLAHENRVKDIASYTNPEHEYL  266 (362)
T ss_pred             EEEEecccHhHhhhhhccccceeeeecCC--ceEEEecCCceEEEeccCCC--ccceeeecchhheeeeEEEecCCceEE
Confidence                             112333334322  36889999999999999986  4567778888888 444  35688999


Q ss_pred             EEEeCCCcEEEEEcCCC
Q 004969          653 LGKGSGTSMFVQSLRGD  669 (721)
Q Consensus       653 asgs~Dg~I~VWDl~g~  669 (721)
                      ++++.||.|+|||++..
T Consensus       267 vTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  267 VTASSDGFIKVWDIDME  283 (362)
T ss_pred             EEeccCceEEEEEcccc
Confidence            99999999999999843

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.79  E-value=1.9e-18  Score=182.82  Aligned_cols=201  Identities=20%  Similarity=0.282  Sum_probs=165.1

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      +|..++|+..-.+.||+||.|.+|++||+.+|++..++.  .|.+.|.+++|+|..+.+|++|+.|++|.+.|.+.... 
T Consensus       245 avl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~--~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~-  321 (463)
T KOG0270|consen  245 AVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT--HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN-  321 (463)
T ss_pred             HHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehh--hcCCceeEEEecCCCceEEEeccccceEEeeeccCccc-
Confidence            577888888777899999999999999999999999987  78899999999999999999999999999999996322 


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCE-EEEEeCCCcEEEEECCC-CcEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDEL-FLASGYSKNIALYDINS-GRRLQVFADMHKEHINVVKFSNHSPSIFATS  612 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~-lls~g~Dg~IrlWDl~s-~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg  612 (721)
                              ....+...+.|-.++|++.... ++++..||+|+-+|+|+ ++++++++. |.+.|.++++++.-+.+++|+
T Consensus       322 --------s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~A-Hd~~ISgl~~n~~~p~~l~t~  392 (463)
T KOG0270|consen  322 --------SGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKA-HDDEISGLSVNIQTPGLLSTA  392 (463)
T ss_pred             --------cCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEe-ccCCcceEEecCCCCcceeec
Confidence                    2334555678999999988765 55555799999999997 599999996 999999999999999999999


Q ss_pred             ECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCC-EEEEEeCCCcEEEEEcC
Q 004969          613 SFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDH-YLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       613 s~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~-~Lasgs~Dg~I~VWDl~  667 (721)
                      +.|++|++|++.......+....-.-+.. |.++.|+-. +++.|+..+.++|||+.
T Consensus       393 s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~  449 (463)
T KOG0270|consen  393 STDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIF  449 (463)
T ss_pred             cccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecc
Confidence            99999999999865443333222222334 677777654 55667778889999987

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.79  E-value=1.1e-18  Score=191.59  Aligned_cols=206  Identities=17%  Similarity=0.257  Sum_probs=168.5

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCCC--eEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENE--NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg--~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~  533 (721)
                      |..+.... +++.+++++.|-+|++|+...+  -+..++.  .|.+.|.++++-.++..++||||-|+.|.+||++++..
T Consensus        76 VNDiiL~~-~~~tlIS~SsDtTVK~W~~~~~~~~c~stir--~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~  152 (735)
T KOG0308|consen   76 VNDIILCG-NGKTLISASSDTTVKVWNAHKDNTFCMSTIR--THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTA  152 (735)
T ss_pred             HhhHHhhc-CCCceEEecCCceEEEeecccCcchhHhhhh--cccchheeeeecccCceeEEecCCCccEEEEEccCcch
Confidence            34445555 7788999999999999999877  4566666  89999999998447788999999999999999998743


Q ss_pred             -cccccccCc-ceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEE
Q 004969          534 -SIRGMHYGA-GTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFAT  611 (721)
Q Consensus       534 -~~~~~~~~~-~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaS  611 (721)
                       .+....... ......+...|++++.++.+..+++||..+.+++||.++++.+..+.| |...|..+-.++|| +.+++
T Consensus       153 ~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrG-HTdNVr~ll~~dDG-t~~ls  230 (735)
T KOG0308|consen  153 TLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRG-HTDNVRVLLVNDDG-TRLLS  230 (735)
T ss_pred             hhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeec-cccceEEEEEcCCC-CeEee
Confidence             111111111 111114567899999999998899999999999999999999999997 99999999999999 89999


Q ss_pred             EECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004969          612 SSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG  668 (721)
Q Consensus       612 gs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g  668 (721)
                      +|.||+|++||+...+|...  +..|...+ ++.-+|+-.++++|+.||.|+.=|++.
T Consensus       231 ~sSDgtIrlWdLgqQrCl~T--~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n  286 (735)
T KOG0308|consen  231 ASSDGTIRLWDLGQQRCLAT--YIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRN  286 (735)
T ss_pred             cCCCceEEeeeccccceeee--EEeccCceEEEeeCCCcceEEecCCCCcEEecccCC
Confidence            99999999999999877544  44455555 888999999999999999999988873

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.78  E-value=3.7e-17  Score=169.56  Aligned_cols=196  Identities=16%  Similarity=0.246  Sum_probs=160.1

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|+|+.|+. ++.+||+|..+|.|+||...+|.....+.  .....|-=+.|+ +.+..|++|+.||.+-+|.+..+.. 
T Consensus       108 SVt~~~Fsh-dgtlLATGdmsG~v~v~~~stg~~~~~~~--~e~~dieWl~WH-p~a~illAG~~DGsvWmw~ip~~~~-  182 (399)
T KOG0296|consen  108 SVTCCSFSH-DGTLLATGDMSGKVLVFKVSTGGEQWKLD--QEVEDIEWLKWH-PRAHILLAGSTDGSVWMWQIPSQAL-  182 (399)
T ss_pred             ceEEEEEcc-CceEEEecCCCccEEEEEcccCceEEEee--cccCceEEEEec-ccccEEEeecCCCcEEEEECCCcce-
Confidence            599999999 99999999999999999999999888775  234566678898 5889999999999999999988422 


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEc-------------------------
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFA-------------------------  589 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~-------------------------  589 (721)
                      .        .+-..|..++++=.|.|+|..++++..||+|++||+.+++++..+.                         
T Consensus       183 ~--------kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e  254 (399)
T KOG0296|consen  183 C--------KVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSE  254 (399)
T ss_pred             e--------eEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCC
Confidence            1        2223355667788888888888888888888888888877655321                         


Q ss_pred             ---------------------------------------------------------------------cccCCCeEEEE
Q 004969          590 ---------------------------------------------------------------------DMHKEHINVVK  600 (721)
Q Consensus       590 ---------------------------------------------------------------------~~h~~~V~sI~  600 (721)
                                                                                           -.|...|..+.
T Consensus       255 ~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~  334 (399)
T KOG0296|consen  255 GVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLK  334 (399)
T ss_pred             ccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEE
Confidence                                                                                 01456677888


Q ss_pred             EcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          601 FSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       601 fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                      |-+ . .++++++.+|.|+.||.|++++  .+...+|...+ .++++|++++++++|.|++.+||++.
T Consensus       335 w~~-t-~~l~t~c~~g~v~~wDaRtG~l--~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  335 WLN-T-DYLLTACANGKVRQWDARTGQL--KFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EcC-c-chheeeccCceEEeeeccccce--EEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            877 3 5788999999999999999955  66778888888 99999999999999999999999864

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.78  E-value=4.6e-18  Score=176.74  Aligned_cols=194  Identities=19%  Similarity=0.309  Sum_probs=152.1

Q ss_pred             CCCEEEEEECCCeEEEEECCC----------------CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEc
Q 004969          465 ISCLMVFGTLDGEIVVVNHEN----------------ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDI  528 (721)
Q Consensus       465 dg~~LasGs~DG~I~IWdl~t----------------g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi  528 (721)
                      +..+.++-+..|.|+||++..                .+.+.++.  +|.+.-++++|+|.....|+||..-+.|++|..
T Consensus       164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~--ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~  241 (440)
T KOG0302|consen  164 NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFN--GHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEP  241 (440)
T ss_pred             CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEec--ccCccceeeecccccccccccCccccceEeeee
Confidence            456777888899999999742                22344444  888899999999877778999999999999999


Q ss_pred             CCCCCcccccccCcceeEeccCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCc-EEEEEccccCCCeEEEEEcCCCC
Q 004969          529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD-ELFLASGYSKNIALYDINSGR-RLQVFADMHKEHINVVKFSNHSP  606 (721)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~-~~lls~g~Dg~IrlWDl~s~~-~v~~l~~~h~~~V~sI~fsPdg~  606 (721)
                      .++.-.+.      ......|...|-.++|+|.. +.|++++.||+|+|||+|++. ....+..+|.+.|+.|.|+..-+
T Consensus       242 ~~g~W~vd------~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~  315 (440)
T KOG0302|consen  242 STGSWKVD------QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREP  315 (440)
T ss_pred             ccCceeec------CccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcc
Confidence            88654221      11122366789999999975 566777789999999999872 22222235999999999999884


Q ss_pred             cEEEEEECCCcEEEEECCCCCc-eeEEEecCCCCeE-EEEEec-CCCEEEEEeCCCcEEEEEcC
Q 004969          607 SIFATSSFDQDVKLWDLRQKPI-QPCYTASSSKGNV-MVCFSP-DDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       607 ~lLaSgs~DgtIrIWDlrs~~~-~~~~~~~~~~~~v-sl~fSp-dg~~Lasgs~Dg~I~VWDl~  667 (721)
                       +||+|+.||+++|||+|+-+. .++..+..|..++ ++.|+| +...|++++.|+.|.+||+.
T Consensus       316 -lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  316 -LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS  378 (440)
T ss_pred             -eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence             999999999999999997432 4567777788888 999999 45677888899999999986

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.78  E-value=2.1e-17  Score=183.70  Aligned_cols=235  Identities=17%  Similarity=0.275  Sum_probs=191.7

Q ss_pred             eeeeeccCCCCCCCCCccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEE
Q 004969          437 LHTLTVSGNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIA  516 (721)
Q Consensus       437 ~~~l~~~gh~~~~~~~~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaS  516 (721)
                      ...+...||..       -|++++++. +...+++|+ .+.|+||+..+.++++++..    +.+.+..|. |.+.++++
T Consensus       364 ~~~i~~~GHR~-------dVRsl~vS~-d~~~~~Sga-~~SikiWn~~t~kciRTi~~----~y~l~~~Fv-pgd~~Iv~  429 (888)
T KOG0306|consen  364 TSNIEIGGHRS-------DVRSLCVSS-DSILLASGA-GESIKIWNRDTLKCIRTITC----GYILASKFV-PGDRYIVL  429 (888)
T ss_pred             cceeeeccchh-------heeEEEeec-CceeeeecC-CCcEEEEEccCcceeEEecc----ccEEEEEec-CCCceEEE
Confidence            33445555544       589999999 766666665 56799999999999999973    488999998 67899999


Q ss_pred             EeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC-----CcE--E----
Q 004969          517 GSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINS-----GRR--L----  585 (721)
Q Consensus       517 gs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s-----~~~--v----  585 (721)
                      |...|.+.+||+......        .. .-.|.+.|++++..|++..+++||.|++|++||..-     |..  +    
T Consensus       430 G~k~Gel~vfdlaS~~l~--------Et-i~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~  500 (888)
T KOG0306|consen  430 GTKNGELQVFDLASASLV--------ET-IRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLK  500 (888)
T ss_pred             eccCCceEEEEeehhhhh--------hh-hhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeec
Confidence            999999999999885431        11 124677899999999999999999999999999752     211  1    


Q ss_pred             --EEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEE
Q 004969          586 --QVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMF  662 (721)
Q Consensus       586 --~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~  662 (721)
                        +++.  -...|.|+.++||| .+++++--|.+|+||-+.+-+.  -..+.||.-++ ++..|||+..++|||.|.+|+
T Consensus       501 ~~rtLe--l~ddvL~v~~Spdg-k~LaVsLLdnTVkVyflDtlKF--flsLYGHkLPV~smDIS~DSklivTgSADKnVK  575 (888)
T KOG0306|consen  501 HTRTLE--LEDDVLCVSVSPDG-KLLAVSLLDNTVKVYFLDTLKF--FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVK  575 (888)
T ss_pred             cceEEe--ccccEEEEEEcCCC-cEEEEEeccCeEEEEEecceee--eeeecccccceeEEeccCCcCeEEeccCCCceE
Confidence              1222  45789999999999 8999999999999999998643  55778898888 999999999999999999999


Q ss_pred             EEEcC-CC---cccccccCeEEEEECCCCCcccccccEEEEecCCCcc
Q 004969          663 VQSLR-GD---PFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKE  706 (721)
Q Consensus       663 VWDl~-g~---~l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~~ke  706 (721)
                      +|-+. |+   .+-.|+.+|+++.|-|..       .++-+||...+.
T Consensus       576 iWGLdFGDCHKS~fAHdDSvm~V~F~P~~-------~~FFt~gKD~kv  616 (888)
T KOG0306|consen  576 IWGLDFGDCHKSFFAHDDSVMSVQFLPKT-------HLFFTCGKDGKV  616 (888)
T ss_pred             EeccccchhhhhhhcccCceeEEEEcccc-------eeEEEecCcceE
Confidence            99988 43   466778899999999998       888888887443

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.77  E-value=6.7e-18  Score=168.37  Aligned_cols=191  Identities=17%  Similarity=0.259  Sum_probs=153.6

Q ss_pred             CCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCC-CEEEEEeCCCc
Q 004969          495 FGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD-ELFLASGYSKN  573 (721)
Q Consensus       495 ~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~-~~lls~g~Dg~  573 (721)
                      .+|...|.+|+|+ .+|..|++|+.|+++++|+++..+..       .......|.+.|-.++|+|.. +.+++++.|++
T Consensus        17 ~~~~~~v~Sv~wn-~~g~~lasgs~dktv~v~n~e~~r~~-------~~~~~~gh~~svdql~w~~~~~d~~atas~dk~   88 (313)
T KOG1407|consen   17 QGHVQKVHSVAWN-CDGTKLASGSFDKTVSVWNLERDRFR-------KELVYRGHTDSVDQLCWDPKHPDLFATASGDKT   88 (313)
T ss_pred             hhhhhcceEEEEc-ccCceeeecccCCceEEEEecchhhh-------hhhcccCCCcchhhheeCCCCCcceEEecCCce
Confidence            3888999999998 89999999999999999999886431       112233466678888888765 67778888999


Q ss_pred             EEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCc-------------------------
Q 004969          574 IALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPI-------------------------  628 (721)
Q Consensus       574 IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~-------------------------  628 (721)
                      |++||+++++++.....  .+.=.-+.|+|+| .+++.++.|..|.+.|.++.+.                         
T Consensus        89 ir~wd~r~~k~~~~i~~--~~eni~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt  165 (313)
T KOG1407|consen   89 IRIWDIRSGKCTARIET--KGENINITWSPDG-EYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLT  165 (313)
T ss_pred             EEEEEeccCcEEEEeec--cCcceEEEEcCCC-CEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEe
Confidence            99999999999998873  4444558899999 7999999999999999876321                         


Q ss_pred             --------------eeEEEecCCCCe-EEEEEecCCCEEEEEeCCCcEEEEEcC----CCcccccccCeEEEEECCCCCc
Q 004969          629 --------------QPCYTASSSKGN-VMVCFSPDDHYLLGKGSGTSMFVQSLR----GDPFRDFNMSILAAYTRPSSKS  689 (721)
Q Consensus       629 --------------~~~~~~~~~~~~-vsl~fSpdg~~Lasgs~Dg~I~VWDl~----g~~l~~~~~~V~~v~fsP~~~~  689 (721)
                                    .++..+..|... +++.|+|+|+|+|+|+.|-.+.+||+.    -+.+..+.-+|..+.|+-++  
T Consensus       166 ~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg--  243 (313)
T KOG1407|consen  166 NGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDG--  243 (313)
T ss_pred             cCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCc--
Confidence                          223333444433 389999999999999999999999987    34456667899999999999  


Q ss_pred             ccccccEEEEecCC
Q 004969          690 EIVKVNLLASTDHC  703 (721)
Q Consensus       690 ~~v~v~lLASgs~~  703 (721)
                           .+||+||..
T Consensus       244 -----~~lASaSED  252 (313)
T KOG1407|consen  244 -----RMLASASED  252 (313)
T ss_pred             -----ceeeccCcc
Confidence                 999999987

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=1.9e-17  Score=175.84  Aligned_cols=234  Identities=15%  Similarity=0.200  Sum_probs=188.9

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCC--eEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENE--NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP  532 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg--~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~  532 (721)
                      .|+++.||| ...++++++.||+++||.+...  ..++.+.  -...+|.+.+|.|.....+++++.-.....||+.+.+
T Consensus       215 ~I~sv~FHp-~~plllvaG~d~~lrifqvDGk~N~~lqS~~--l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak  291 (514)
T KOG2055|consen  215 GITSVQFHP-TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIH--LEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK  291 (514)
T ss_pred             CceEEEecC-CCceEEEecCCCcEEEEEecCccChhheeee--eccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence            599999999 8899999999999999998732  2344443  2347899999995443499999999999999999866


Q ss_pred             Ccc-cccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEE
Q 004969          533 PSI-RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFAT  611 (721)
Q Consensus       533 ~~~-~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaS  611 (721)
                      ... ....+..       ...+....++++++.++..|..|.|.+....+++.+.+++  -.+.|..++|+.++ ..+++
T Consensus       292 ~~k~~~~~g~e-------~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K--ieG~v~~~~fsSds-k~l~~  361 (514)
T KOG2055|consen  292 VTKLKPPYGVE-------EKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK--IEGVVSDFTFSSDS-KELLA  361 (514)
T ss_pred             cccccCCCCcc-------cchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee--eccEEeeEEEecCC-cEEEE
Confidence            521 1222211       1235677888999999999999999999999999999998  67899999999999 77888


Q ss_pred             EECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC-------CCccccc---ccCeEEE
Q 004969          612 SSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR-------GDPFRDF---NMSILAA  681 (721)
Q Consensus       612 gs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~-------g~~l~~~---~~~V~~v  681 (721)
                      ++.+|.|.+||++...+...+.-.+.....+++.|++|.|||+|+..|.|.|||..       -+|++.+   ...|..+
T Consensus       362 ~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl  441 (514)
T KOG2055|consen  362 SGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSL  441 (514)
T ss_pred             EcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeee
Confidence            88899999999999988777777776666789999999999999999999999965       1233333   4689999


Q ss_pred             EECCCCCcccccccEEEEecCCCcccc
Q 004969          682 YTRPSSKSEIVKVNLLASTDHCDKECS  708 (721)
Q Consensus       682 ~fsP~~~~~~v~v~lLASgs~~~ke~s  708 (721)
                      .|+|++       .+||-+|...+...
T Consensus       442 ~Fn~d~-------qiLAiaS~~~knal  461 (514)
T KOG2055|consen  442 QFNHDA-------QILAIASRVKKNAL  461 (514)
T ss_pred             eeCcch-------hhhhhhhhccccce
Confidence            999999       99999999844443

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.77  E-value=5.4e-19  Score=195.72  Aligned_cols=217  Identities=19%  Similarity=0.275  Sum_probs=182.6

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|.++..-. .+..+++|+.|-.+-+|.+.....+..+.  +|..+|-++.|+ ....+|++|+.+|+|++||++..+. 
T Consensus        30 av~~lk~~~-s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~--~hespIeSl~f~-~~E~LlaagsasgtiK~wDleeAk~-  104 (825)
T KOG0267|consen   30 AVGCLKIRK-SSRSLVTGGEDEKVNLWAIGKPNAITSLT--GHESPIESLTFD-TSERLLAAGSASGTIKVWDLEEAKI-  104 (825)
T ss_pred             hhceeeeec-cceeeccCCCceeeccccccCCchhheee--ccCCcceeeecC-cchhhhcccccCCceeeeehhhhhh-
Confidence            455666534 67889999999999999987666666555  999999999998 7788999999999999999997543 


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF  614 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~  614 (721)
                      +..        -+.|...+.++.|||-+.+++.++.|+.+++||++..-+.+.+.+ |...|..+.|+|+| .++++|+.
T Consensus       105 vrt--------Ltgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s-~~~vv~~l~lsP~G-r~v~~g~e  174 (825)
T KOG0267|consen  105 VRT--------LTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS-HTRVVDVLRLSPDG-RWVASGGE  174 (825)
T ss_pred             hhh--------hhccccCcceeeeccceEEeccccccccceehhhhccCceeeecC-CcceeEEEeecCCC-ceeeccCC
Confidence            222        233556789999999999998888999999999998889999998 99999999999999 89999999


Q ss_pred             CCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCC----cccccccCeEEEEECCCCC
Q 004969          615 DQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGD----PFRDFNMSILAAYTRPSSK  688 (721)
Q Consensus       615 DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~----~l~~~~~~V~~v~fsP~~~  688 (721)
                      |.+++|||.+.++.  ...+..|.+.+ ++.|+|..-.+++|+.|+++++||++..    ...+....|.+..|+|+++
T Consensus       175 d~tvki~d~~agk~--~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~  251 (825)
T KOG0267|consen  175 DNTVKIWDLTAGKL--SKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGK  251 (825)
T ss_pred             cceeeeeccccccc--ccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCce
Confidence            99999999999866  44566677777 8999999999999999999999999822    1234456899999999993

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.77  E-value=4.6e-18  Score=172.64  Aligned_cols=226  Identities=18%  Similarity=0.311  Sum_probs=182.0

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|.++.||| ...+|++|+.|++|+++|.......+.++......+|.++.|+ |.|++|+.|..-.++++||+++.++-
T Consensus       174 evn~l~FHP-re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfH-PsGefllvgTdHp~~rlYdv~T~Qcf  251 (430)
T KOG0640|consen  174 EVNDLDFHP-RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFH-PSGEFLLVGTDHPTLRLYDVNTYQCF  251 (430)
T ss_pred             cccceeecc-hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeec-CCCceEEEecCCCceeEEeccceeEe
Confidence            488999999 8899999999999999999765443333332345689999999 78999999999999999999997652


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCC-CeEEEEEcCCCCcEEEEEE
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKE-HINVVKFSNHSPSIFATSS  613 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~-~V~sI~fsPdg~~lLaSgs  613 (721)
                      +...      ..-+|.+.|+++.+++.+...++++.||.|++||--+++++.++..+|.+ .|.+..|..+| +++++.+
T Consensus       252 vsan------Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~-kyiLsSG  324 (430)
T KOG0640|consen  252 VSAN------PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNG-KYILSSG  324 (430)
T ss_pred             eecC------cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCC-eEEeecC
Confidence            2111      12346678999999999999999999999999999999999999877864 68889999999 8999999


Q ss_pred             CCCcEEEEECCCCCceeEEEecCCCCeE----EEEEecCCCEEEEEe-CCCcEEEEEcCC-Cc----ccccccCeEEEEE
Q 004969          614 FDQDVKLWDLRQKPIQPCYTASSSKGNV----MVCFSPDDHYLLGKG-SGTSMFVQSLRG-DP----FRDFNMSILAAYT  683 (721)
Q Consensus       614 ~DgtIrIWDlrs~~~~~~~~~~~~~~~v----sl~fSpdg~~Lasgs-~Dg~I~VWDl~g-~~----l~~~~~~V~~v~f  683 (721)
                      .|..+++|.+.++++...++..+..+..    ...|+....|++.-. ..+.+.-||-+. ..    -.+|.+.+..+.-
T Consensus       325 ~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~H  404 (430)
T KOG0640|consen  325 KDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVH  404 (430)
T ss_pred             CcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEe
Confidence            9999999999999887777665544443    467888888887654 356788999872 21    3467888999888


Q ss_pred             CCCCCc
Q 004969          684 RPSSKS  689 (721)
Q Consensus       684 sP~~~~  689 (721)
                      +|..+.
T Consensus       405 SP~~p~  410 (430)
T KOG0640|consen  405 SPVEPA  410 (430)
T ss_pred             CCCCCc
Confidence            888753

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.77  E-value=5.7e-18  Score=180.77  Aligned_cols=227  Identities=15%  Similarity=0.187  Sum_probs=179.5

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCCC---eEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENE---NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP  532 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg---~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~  532 (721)
                      |-++.++. ..+++.+|+. |.|+|||+...   ..+..+......+.|.+...+ ++++.|++|+.-.++.|||+....
T Consensus       422 VcAvtIS~-~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~-pdgrtLivGGeastlsiWDLAapT  498 (705)
T KOG0639|consen  422 VCAVTISN-PTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLL-PDGRTLIVGGEASTLSIWDLAAPT  498 (705)
T ss_pred             EEEEEecC-CcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEec-CCCceEEeccccceeeeeeccCCC
Confidence            56677777 7788888874 67999999642   234444333345678888887 799999999999999999999865


Q ss_pred             CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969          533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS  612 (721)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg  612 (721)
                      +.++.-....       .-..+.++.+|+....+++..||.|.|||+.+...++.|++ |...+.||.++++| ..|-||
T Consensus       499 prikaeltss-------apaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqG-htDGascIdis~dG-tklWTG  569 (705)
T KOG0639|consen  499 PRIKAELTSS-------APACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQG-HTDGASCIDISKDG-TKLWTG  569 (705)
T ss_pred             cchhhhcCCc-------chhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccC-CCCCceeEEecCCC-ceeecC
Confidence            5332211111       01357889999999999999999999999999999999998 99999999999999 899999


Q ss_pred             ECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCC---cccccccCeEEEEECCCCCc
Q 004969          613 SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGD---PFRDFNMSILAAYTRPSSKS  689 (721)
Q Consensus       613 s~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~---~l~~~~~~V~~v~fsP~~~~  689 (721)
                      +-|.+||-||+|++.....+  .-...+.++.++|++.|++.|=.++.+.|-...+.   .+..|+..|.++.|.+.|  
T Consensus       570 GlDntvRcWDlregrqlqqh--dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cG--  645 (705)
T KOG0639|consen  570 GLDNTVRCWDLREGRQLQQH--DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCG--  645 (705)
T ss_pred             CCccceeehhhhhhhhhhhh--hhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccC--
Confidence            99999999999998543333  33345568999999999999999999999988742   355668899999999999  


Q ss_pred             ccccccEEEEecCC
Q 004969          690 EIVKVNLLASTDHC  703 (721)
Q Consensus       690 ~~v~v~lLASgs~~  703 (721)
                           ..++|.+..
T Consensus       646 -----kwfvStGkD  654 (705)
T KOG0639|consen  646 -----KWFVSTGKD  654 (705)
T ss_pred             -----ceeeecCch
Confidence                 555555543

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.77  E-value=8.5e-18  Score=179.31  Aligned_cols=205  Identities=15%  Similarity=0.225  Sum_probs=171.3

Q ss_pred             CEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeE
Q 004969          467 CLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVT  546 (721)
Q Consensus       467 ~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~  546 (721)
                      .++++|+..|+|+|||++...+.+.++  +|...|++|.++ ....+|++++..|-|.|..+.++..          ...
T Consensus        92 ~y~~sgG~~~~Vkiwdl~~kl~hr~lk--dh~stvt~v~YN-~~DeyiAsvs~gGdiiih~~~t~~~----------tt~  158 (673)
T KOG4378|consen   92 LYEISGGQSGCVKIWDLRAKLIHRFLK--DHQSTVTYVDYN-NTDEYIASVSDGGDIIIHGTKTKQK----------TTT  158 (673)
T ss_pred             eeeeccCcCceeeehhhHHHHHhhhcc--CCcceeEEEEec-CCcceeEEeccCCcEEEEecccCcc----------ccc
Confidence            689999999999999999666666666  899999999998 7788999999999999999998654          233


Q ss_pred             eccC--CCeEEEEEecCCCEEEE-EeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC
Q 004969          547 FDEF--DQLTSVHVNSMDELFLA-SGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDL  623 (721)
Q Consensus       547 ~~~~--~~V~sv~~sp~~~~lls-~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDl  623 (721)
                      |.+.  ..|.-+.+++....+++ ++++|.|.+||.....++..+...|..+...|+|+|..+.+|++.+.|..|.+||+
T Consensus       159 f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~  238 (673)
T KOG4378|consen  159 FTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDI  238 (673)
T ss_pred             eecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeec
Confidence            4333  23568899988776665 56789999999999889888887799999999999999899999999999999999


Q ss_pred             CCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCc-----ccccccCeEEEEECCC
Q 004969          624 RQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDP-----FRDFNMSILAAYTRPS  686 (721)
Q Consensus       624 rs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~-----l~~~~~~V~~v~fsP~  686 (721)
                      +..+......  -......++|+++|.+|++|+..|.|..||+++.+     +..|...|.+++|.|.
T Consensus       239 ~s~~s~~~l~--y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s  304 (673)
T KOG4378|consen  239 RSQASTDRLT--YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPS  304 (673)
T ss_pred             ccccccceee--ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeec
Confidence            9875433333  23334479999999999999999999999999543     4466788999999886

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.77  E-value=1.1e-17  Score=184.93  Aligned_cols=208  Identities=18%  Similarity=0.235  Sum_probs=171.9

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI  535 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~  535 (721)
                      +.+++|-+.++.++++|+.|++|.+|......+..++.  +|...|.++... .++. ++|||.|.++++|-...-..  
T Consensus        61 ~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~Lk--gH~snVC~ls~~-~~~~-~iSgSWD~TakvW~~~~l~~--  134 (745)
T KOG0301|consen   61 ANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLK--GHKSNVCSLSIG-EDGT-LISGSWDSTAKVWRIGELVY--  134 (745)
T ss_pred             eccceeccccCcceEeecccceEEEEecCCCCchhhhh--ccccceeeeecC-CcCc-eEecccccceEEecchhhhc--
Confidence            34478887677789999999999999999999998888  999999999964 4444 99999999999999876322  


Q ss_pred             cccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECC
Q 004969          536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD  615 (721)
Q Consensus       536 ~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~D  615 (721)
                               ..-.|...|+++..-|.+ .+++|+.|++|++|.-  ++.+++|.+ |.+.|+.+++-|++  .|++++.|
T Consensus       135 ---------~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~g-HtD~VRgL~vl~~~--~flScsND  199 (745)
T KOG0301|consen  135 ---------SLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSG-HTDCVRGLAVLDDS--HFLSCSND  199 (745)
T ss_pred             ---------ccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhcc-chhheeeeEEecCC--CeEeecCC
Confidence                     123455678998887776 9999999999999975  788999998 99999999999986  59999999


Q ss_pred             CcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC--CCcccccccCeEEEEECCCC
Q 004969          616 QDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR--GDPFRDFNMSILAAYTRPSS  687 (721)
Q Consensus       616 gtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~--g~~l~~~~~~V~~v~fsP~~  687 (721)
                      |.|++|++. +.+  +....+|...+ +++..+++..+++++.|+++++|+..  ...+..-...++++.+-+++
T Consensus       200 g~Ir~w~~~-ge~--l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~~q~I~lPttsiWsa~~L~Ng  271 (745)
T KOG0301|consen  200 GSIRLWDLD-GEV--LLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDECVQVITLPTTSIWSAKVLLNG  271 (745)
T ss_pred             ceEEEEecc-Cce--eeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCceEEEEecCccceEEEEEeeCC
Confidence            999999994 433  67778898888 88988899999999999999999976  22222223478888887777

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=1.1e-17  Score=170.39  Aligned_cols=233  Identities=15%  Similarity=0.281  Sum_probs=175.2

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI  535 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~  535 (721)
                      ..|+.|++ .|.++|+|+.||.|.|||+.|....+.+.  +|..+|++++|+ .++.+|+|+|.|..|++||+..+.+..
T Consensus        26 a~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T~~iar~ls--aH~~pi~sl~WS-~dgr~LltsS~D~si~lwDl~~gs~l~  101 (405)
T KOG1273|consen   26 AECCQFSR-WGDYLAVGCANGRVVIYDFDTFRIARMLS--AHVRPITSLCWS-RDGRKLLTSSRDWSIKLWDLLKGSPLK  101 (405)
T ss_pred             cceEEecc-CcceeeeeccCCcEEEEEccccchhhhhh--ccccceeEEEec-CCCCEeeeecCCceeEEEeccCCCcee
Confidence            57899999 99999999999999999999988777776  899999999998 899999999999999999999876522


Q ss_pred             cccc-----------------------cCcceeEec----------cCCC----eEEEEEecCCCEEEEEeCCCcEEEEE
Q 004969          536 RGMH-----------------------YGAGTVTFD----------EFDQ----LTSVHVNSMDELFLASGYSKNIALYD  578 (721)
Q Consensus       536 ~~~~-----------------------~~~~~~~~~----------~~~~----V~sv~~sp~~~~lls~g~Dg~IrlWD  578 (721)
                      ....                       .....+.+.          ..+.    ..+..|++.|.++++|...|.+.++|
T Consensus       102 rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~  181 (405)
T KOG1273|consen  102 RIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYD  181 (405)
T ss_pred             EEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEe
Confidence            1110                       000111111          0000    12234677889999999999999999


Q ss_pred             CCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCC-------CCceeEEEec---CCCCeEEEEEecC
Q 004969          579 INSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQ-------KPIQPCYTAS---SSKGNVMVCFSPD  648 (721)
Q Consensus       579 l~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs-------~~~~~~~~~~---~~~~~vsl~fSpd  648 (721)
                      ..+-+++..++......|..+.++..| ..|+.-+.|+.||.|+++.       +...+.+++.   ....+.+++||.+
T Consensus       182 a~t~e~vas~rits~~~IK~I~~s~~g-~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~d  260 (405)
T KOG1273|consen  182 AETLECVASFRITSVQAIKQIIVSRKG-RFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGD  260 (405)
T ss_pred             cchheeeeeeeechheeeeEEEEeccC-cEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCC
Confidence            999999998885233788899999988 8999999999999999873       1222222221   2223447999999


Q ss_pred             CCEEEEEeC-CCcEEEEEcC-CCccccccc----CeEEEEECCCCCcccccccEEEEe
Q 004969          649 DHYLLGKGS-GTSMFVQSLR-GDPFRDFNM----SILAAYTRPSSKSEIVKVNLLAST  700 (721)
Q Consensus       649 g~~Lasgs~-Dg~I~VWDl~-g~~l~~~~~----~V~~v~fsP~~~~~~v~v~lLASg  700 (721)
                      |.|+++|+. ...++||.-. |..++-.++    ....+.|||..       +++++-
T Consensus       261 geYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~r-------p~i~si  311 (405)
T KOG1273|consen  261 GEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVR-------PIIASI  311 (405)
T ss_pred             ccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccce-------eeeeec
Confidence            999998874 3478999977 555444332    46778999998       777765

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.76  E-value=2.4e-17  Score=175.25  Aligned_cols=226  Identities=15%  Similarity=0.225  Sum_probs=181.2

Q ss_pred             cCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEE-ee-------------c--CCCCCCeEEEEEeeCCCCEEEEE
Q 004969          454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSY-IP-------------S--FGAMNSVLGLCWLKKYPSKLIAG  517 (721)
Q Consensus       454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~-l~-------------~--~~H~~~V~sl~fsp~d~~~LaSg  517 (721)
                      ..|.|++++| ++.+.++++.+|+|.-|++.+|+.... ++             .  .+|...|.+++.+ +++.+|++|
T Consensus       143 ~s~~~vals~-d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS-~Dgkylatg  220 (479)
T KOG0299|consen  143 LSVTSVALSP-DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVS-SDGKYLATG  220 (479)
T ss_pred             CcceEEEeec-cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEc-CCCcEEEec
Confidence            3699999999 899999999999999999988874411 11             1  2788899999998 899999999


Q ss_pred             eCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeE
Q 004969          518 SDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHIN  597 (721)
Q Consensus       518 s~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~  597 (721)
                      +.|..|.||+.++.+.. +.        ...|.+.|.+++|-.....+++++.|++|++|++.....+.++.+ |++.|.
T Consensus       221 g~d~~v~Iw~~~t~ehv-~~--------~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyG-Hqd~v~  290 (479)
T KOG0299|consen  221 GRDRHVQIWDCDTLEHV-KV--------FKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYG-HQDGVL  290 (479)
T ss_pred             CCCceEEEecCcccchh-hc--------ccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhC-Ccccee
Confidence            99999999999996652 11        223557789999977778899999999999999999999999997 999999


Q ss_pred             EEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC-CCcccc--
Q 004969          598 VVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR-GDPFRD--  673 (721)
Q Consensus       598 sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~l~~--  673 (721)
                      +|....-+ +.+.+|+.|+++++|++... .  ...+.++.+.+ +++|- +...+++|+.+|.|.+|++. .+|+-.  
T Consensus       291 ~IdaL~re-R~vtVGgrDrT~rlwKi~ee-s--qlifrg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~  365 (479)
T KOG0299|consen  291 GIDALSRE-RCVTVGGRDRTVRLWKIPEE-S--QLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSR  365 (479)
T ss_pred             eechhccc-ceEEeccccceeEEEecccc-c--eeeeeCCCCCeeeEEEe-cccceeeccCCceEEEeeecccCceeEee
Confidence            99988776 67777889999999999653 2  23345666666 77776 45677889999999999986 333211  


Q ss_pred             --c-----------ccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          674 --F-----------NMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       674 --~-----------~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                        |           ...|++++..|.+       .++|+|+..
T Consensus       366 ~AHgv~~~~~~~~~~~Witsla~i~~s-------dL~asGS~~  401 (479)
T KOG0299|consen  366 LAHGVIPELDPVNGNFWITSLAVIPGS-------DLLASGSWS  401 (479)
T ss_pred             ccccccCCccccccccceeeeEecccC-------ceEEecCCC
Confidence              1           1268888888888       999999954

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=1.4e-17  Score=164.74  Aligned_cols=206  Identities=15%  Similarity=0.205  Sum_probs=160.9

Q ss_pred             CeEEEEE-eCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCC-CCEEEEEeCCCeEEEEEcCCCC
Q 004969          455 RPRQFEY-HPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKY-PSKLIAGSDNGSLKLYDIRHMP  532 (721)
Q Consensus       455 ~V~~laf-sP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d-~~~LaSgs~DGtVrIWDi~~~~  532 (721)
                      +|+.++| ||.-|.+||+++.||.|.||.-++|+-.+......|...|++|+|-|.+ +-.|++++.||.|.|.+++...
T Consensus        58 PVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g  137 (299)
T KOG1332|consen   58 PVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG  137 (299)
T ss_pred             CeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC
Confidence            5889998 5667899999999999999999988766555556899999999998654 4578899999999999998741


Q ss_pred             CcccccccCcceeEeccCCCeEEEEEecC---C-----------CEEEEEeCCCcEEEEECCCCcE--EEEEccccCCCe
Q 004969          533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSM---D-----------ELFLASGYSKNIALYDINSGRR--LQVFADMHKEHI  596 (721)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~---~-----------~~lls~g~Dg~IrlWDl~s~~~--v~~l~~~h~~~V  596 (721)
                      .-      ....+.+.|.-.|++++|.|.   |           ..|++||.|..|+||+..+++-  -+++.+ |.+.|
T Consensus       138 ~w------~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~-H~dwV  210 (299)
T KOG1332|consen  138 GW------TTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEG-HKDWV  210 (299)
T ss_pred             Cc------cchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhh-cchhh
Confidence            10      122344556677999999886   3           4699999999999999987643  344666 99999


Q ss_pred             EEEEEcCCC---CcEEEEEECCCcEEEEECCCCCce-eEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          597 NVVKFSNHS---PSIFATSSFDQDVKLWDLRQKPIQ-PCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       597 ~sI~fsPdg---~~lLaSgs~DgtIrIWDlrs~~~~-~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                      +.++|.|.-   ...+|+++.||++.||-.+..... ....+.....++ .++||+.|..|+.++.|+.+++|.-.
T Consensus       211 RDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  211 RDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             hhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence            999999974   358999999999999988742111 111122222334 89999999999999999999999755

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=2.7e-16  Score=153.73  Aligned_cols=204  Identities=20%  Similarity=0.290  Sum_probs=156.0

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeE----------------------------------------------
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENI----------------------------------------------  488 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~----------------------------------------------  488 (721)
                      .|+|.+|+| +|.++++|+.|.+|++.-.+...+                                              
T Consensus        91 siyc~~ws~-~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~td  169 (350)
T KOG0641|consen   91 SIYCTAWSP-CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITD  169 (350)
T ss_pred             cEEEEEecC-ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEee
Confidence            599999999 999999999999999975432110                                              


Q ss_pred             ------EEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCC
Q 004969          489 ------VSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD  562 (721)
Q Consensus       489 ------i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~  562 (721)
                            .+.+  .||.+.|.++- + -++-.+++|+.|.+|++||++-..+. ..+.... .-.-.....|.++++.|.|
T Consensus       170 c~~g~~~~a~--sghtghilaly-s-wn~~m~~sgsqdktirfwdlrv~~~v-~~l~~~~-~~~glessavaav~vdpsg  243 (350)
T KOG0641|consen  170 CGRGQGFHAL--SGHTGHILALY-S-WNGAMFASGSQDKTIRFWDLRVNSCV-NTLDNDF-HDGGLESSAVAAVAVDPSG  243 (350)
T ss_pred             cCCCCcceee--cCCcccEEEEE-E-ecCcEEEccCCCceEEEEeeecccee-eeccCcc-cCCCcccceeEEEEECCCc
Confidence                  0111  26777777663 2 45778999999999999999875431 1110000 0000012468999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCC--ceeEEEecCC-CC
Q 004969          563 ELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKP--IQPCYTASSS-KG  639 (721)
Q Consensus       563 ~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~--~~~~~~~~~~-~~  639 (721)
                      ..+++|..|....+||++.++.++.|.. |...|.++.|+|.. .++++|+.|..|++-|+....  ..++.....| ..
T Consensus       244 rll~sg~~dssc~lydirg~r~iq~f~p-hsadir~vrfsp~a-~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk  321 (350)
T KOG0641|consen  244 RLLASGHADSSCMLYDIRGGRMIQRFHP-HSADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDK  321 (350)
T ss_pred             ceeeeccCCCceEEEEeeCCceeeeeCC-CccceeEEEeCCCc-eEEEEecccceEEEeecccchhhcCceEEEEeccCc
Confidence            9999999999999999999999999997 99999999999987 899999999999999997631  1233333334 44


Q ss_pred             eEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          640 NVMVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       640 ~vsl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                      .+.+.|+|+.--+++.+.|.++.+|-+.
T Consensus       322 ~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  322 AIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             eEEEEecCccceeeeccCcceEEEeccC
Confidence            5589999999999999999999999875

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.76  E-value=2.1e-17  Score=168.14  Aligned_cols=219  Identities=16%  Similarity=0.225  Sum_probs=175.0

Q ss_pred             cCeEEEEEeCCCCCEEEEEECCCeEEEEEC------CC------------------------------CeE--EEEeecC
Q 004969          454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNH------EN------------------------------ENI--VSYIPSF  495 (721)
Q Consensus       454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl------~t------------------------------g~~--i~~l~~~  495 (721)
                      -.|.+|.|++ .+.++++|+.|++-.||..      ..                              |..  +......
T Consensus       191 GSVNsikfh~-s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~lt  269 (481)
T KOG0300|consen  191 GSVNSIKFHN-SGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLT  269 (481)
T ss_pred             cceeeEEecc-ccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeee
Confidence            3699999999 8999999999999999961      10                              000  1112224


Q ss_pred             CCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEE
Q 004969          496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIA  575 (721)
Q Consensus       496 ~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~Ir  575 (721)
                      +|...|.+..|. ..++.+++++.|.+-.+||++++.. +..+.+|        ....+.++-||....+++++.|.+.+
T Consensus       270 gH~~vV~a~dWL-~gg~Q~vTaSWDRTAnlwDVEtge~-v~~LtGH--------d~ELtHcstHptQrLVvTsSrDtTFR  339 (481)
T KOG0300|consen  270 GHRAVVSACDWL-AGGQQMVTASWDRTANLWDVETGEV-VNILTGH--------DSELTHCSTHPTQRLVVTSSRDTTFR  339 (481)
T ss_pred             ccccceEehhhh-cCcceeeeeeccccceeeeeccCce-eccccCc--------chhccccccCCcceEEEEeccCceeE
Confidence            899999999998 7899999999999999999999765 3334433        34567888899999999999999999


Q ss_pred             EEECCCC-cEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEE
Q 004969          576 LYDINSG-RRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLG  654 (721)
Q Consensus       576 lWDl~s~-~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Las  654 (721)
                      +||.+.. ..+..|+| |...|+++.|..+.  .+++|+.|.+|++||+++.. .++.++........++.+..+..++.
T Consensus       340 LWDFReaI~sV~VFQG-HtdtVTS~vF~~dd--~vVSgSDDrTvKvWdLrNMR-splATIRtdS~~NRvavs~g~~iIAi  415 (481)
T KOG0300|consen  340 LWDFREAIQSVAVFQG-HTDTVTSVVFNTDD--RVVSGSDDRTVKVWDLRNMR-SPLATIRTDSPANRVAVSKGHPIIAI  415 (481)
T ss_pred             eccchhhcceeeeecc-cccceeEEEEecCC--ceeecCCCceEEEeeecccc-CcceeeecCCccceeEeecCCceEEe
Confidence            9999943 45678887 99999999999875  79999999999999999864 45666665556667888888889998


Q ss_pred             EeCCCcEEEEEcCCCcc--------cccccCeEEEEECCCC
Q 004969          655 KGSGTSMFVQSLRGDPF--------RDFNMSILAAYTRPSS  687 (721)
Q Consensus       655 gs~Dg~I~VWDl~g~~l--------~~~~~~V~~v~fsP~~  687 (721)
                      -..+..|++||+.|..+        ++|..-|.+++|...-
T Consensus       416 PhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eeh  456 (481)
T KOG0300|consen  416 PHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEH  456 (481)
T ss_pred             ccCCceEEEEecCCCccccCCcccccccceeeeeeeccccC
Confidence            88888999999997653        3455678999996543

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.75  E-value=2.6e-17  Score=174.41  Aligned_cols=220  Identities=17%  Similarity=0.300  Sum_probs=168.1

Q ss_pred             CeEEEEEeCC------CCCEEEEEECCCeEEEEECCCCeE-------------------EEEeecCCCCCCeEEEEEeeC
Q 004969          455 RPRQFEYHPS------ISCLMVFGTLDGEIVVVNHENENI-------------------VSYIPSFGAMNSVLGLCWLKK  509 (721)
Q Consensus       455 ~V~~lafsP~------dg~~LasGs~DG~I~IWdl~tg~~-------------------i~~l~~~~H~~~V~sl~fsp~  509 (721)
                      .|.|++|...      .|+++|.|+.|..|.|||+.-...                   .+.....+|+.+|.+++|+..
T Consensus       175 fPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~  254 (463)
T KOG0270|consen  175 FPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN  254 (463)
T ss_pred             cchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc
Confidence            3567777542      478999999999999999752110                   011112379999999999877


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEec-cCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCC-cEEE
Q 004969          510 YPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFD-EFDQLTSVHVNSMDE-LFLASGYSKNIALYDINSG-RRLQ  586 (721)
Q Consensus       510 d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~-~~~~V~sv~~sp~~~-~lls~g~Dg~IrlWDl~s~-~~v~  586 (721)
                      ..+.|+|||.|.+|++||+.++++          ...+. |.++|.++.|+|... .+++|+.|++|.+.|.|.. ..-.
T Consensus       255 ~~nVLaSgsaD~TV~lWD~~~g~p----------~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~  324 (463)
T KOG0270|consen  255 FRNVLASGSADKTVKLWDVDTGKP----------KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGK  324 (463)
T ss_pred             cceeEEecCCCceEEEEEcCCCCc----------ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCc
Confidence            778999999999999999999876          23333 557899999999765 5667778999999999942 2222


Q ss_pred             EEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCC-CEEEEEeCCCcEEEE
Q 004969          587 VFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDD-HYLLGKGSGTSMFVQ  664 (721)
Q Consensus       587 ~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg-~~Lasgs~Dg~I~VW  664 (721)
                      .++  ..+.|-.++|+|..+..++++..||+++-+|+|+.. .+++++..|.+.+ ++++++.- ..+++++.|+.+++|
T Consensus       325 ~wk--~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~-~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw  401 (463)
T KOG0270|consen  325 EWK--FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG-KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLW  401 (463)
T ss_pred             eEE--eccceEEEEecCCCceeEEEecCCceEEeeecCCCC-CceeEEEeccCCcceEEecCCCCcceeeccccceEEEE
Confidence            333  567899999999999999999999999999999864 6789999999988 79998855 467889999999999


Q ss_pred             EcCCCc---ccccc--c-CeEEEEECCCC
Q 004969          665 SLRGDP---FRDFN--M-SILAAYTRPSS  687 (721)
Q Consensus       665 Dl~g~~---l~~~~--~-~V~~v~fsP~~  687 (721)
                      ++.+..   ...+.  . ...+.++.|+.
T Consensus       402 ~~~~~~~~~v~~~~~~~~rl~c~~~~~~~  430 (463)
T KOG0270|consen  402 KFDVDSPKSVKEHSFKLGRLHCFALDPDV  430 (463)
T ss_pred             eecCCCCcccccccccccceeecccCCCc
Confidence            998432   23332  2 34455667766

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=4e-17  Score=180.36  Aligned_cols=199  Identities=15%  Similarity=0.249  Sum_probs=164.9

Q ss_pred             CccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 004969          452 RSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM  531 (721)
Q Consensus       452 ~~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~  531 (721)
                      +..+|-+++|..   ..+.+|+.||.|.++|+...+.... ...+|...|.+++|+ +++.++++|+.|+.+.|||....
T Consensus       259 h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~~~~~-~~~~H~qeVCgLkws-~d~~~lASGgnDN~~~Iwd~~~~  333 (484)
T KOG0305|consen  259 HASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQHVVS-TLQGHRQEVCGLKWS-PDGNQLASGGNDNVVFIWDGLSP  333 (484)
T ss_pred             cCceeEEEeccC---ceEEEecCCCcEEEEEEecchhhhh-hhhcccceeeeeEEC-CCCCeeccCCCccceEeccCCCc
Confidence            445799999986   8899999999999999987765544 234899999999999 89999999999999999999553


Q ss_pred             CCcccccccCcceeEeccCCCeEEEEEecCCCE-EEEEe--CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcE
Q 004969          532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDEL-FLASG--YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSI  608 (721)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~-lls~g--~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~l  608 (721)
                      .+         ......|...|.+++|+|-..- +++||  .|+.|++||..+++.+....  ....|.++.|++....+
T Consensus       334 ~p---------~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd--tgsQVcsL~Wsk~~kEi  402 (484)
T KOG0305|consen  334 EP---------KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD--TGSQVCSLIWSKKYKEL  402 (484)
T ss_pred             cc---------cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc--cCCceeeEEEcCCCCEE
Confidence            33         1233456678999999997654 55554  39999999999999999887  67899999999998444


Q ss_pred             EEE-EECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004969          609 FAT-SSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG  668 (721)
Q Consensus       609 LaS-gs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g  668 (721)
                      +.+ |..++.|.||+..+.  ..+..+.+|...| .++++|||..+++|+.|.++++|++-+
T Consensus       403 ~sthG~s~n~i~lw~~ps~--~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  403 LSTHGYSENQITLWKYPSM--KLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD  462 (484)
T ss_pred             EEecCCCCCcEEEEecccc--ceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence            444 344778999999985  4467778898888 899999999999999999999999864

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.75  E-value=7.1e-17  Score=168.72  Aligned_cols=224  Identities=16%  Similarity=0.260  Sum_probs=177.5

Q ss_pred             CCCccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeE-------EEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCe
Q 004969          450 ENRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENI-------VSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGS  522 (721)
Q Consensus       450 ~~~~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~-------i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGt  522 (721)
                      ..|...|..++|+|.+...||+|+.|.+|.||.+..+..       +..+.  ||...|--|+|+|...+.|+|+|.|.+
T Consensus        78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~--gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELY--GHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEe--ecceeEEEEeecccchhhHhhccCCce
Confidence            345557899999999999999999999999999876543       34444  999999999999989999999999999


Q ss_pred             EEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCC-CeEEEEE
Q 004969          523 LKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKE-HINVVKF  601 (721)
Q Consensus       523 VrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~-~V~sI~f  601 (721)
                      |.+|++.++..          .+...|.+.|++++|+.+|..+++++.|+.|||||.++++.+..-.+ |.+ .-..+.|
T Consensus       156 v~iWnv~tgea----------li~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~-heG~k~~Raif  224 (472)
T KOG0303|consen  156 VSIWNVGTGEA----------LITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVA-HEGAKPARAIF  224 (472)
T ss_pred             EEEEeccCCce----------eeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeeccc-ccCCCcceeEE
Confidence            99999999664          55667889999999999999999999999999999999999988865 654 3455668


Q ss_pred             cCCCCcEEEEEE---CCCcEEEEECCCC-CceeEEEecCCCCeEEEEEecCCCEEE-EEeCCCcEEEEEcCCCc-----c
Q 004969          602 SNHSPSIFATSS---FDQDVKLWDLRQK-PIQPCYTASSSKGNVMVCFSPDDHYLL-GKGSGTSMFVQSLRGDP-----F  671 (721)
Q Consensus       602 sPdg~~lLaSgs---~DgtIrIWDlrs~-~~~~~~~~~~~~~~vsl~fSpdg~~La-sgs~Dg~I~VWDl~g~~-----l  671 (721)
                      ..+| .++.||-   .++.+-+||..+- +......+....+.+---|.+|...++ +|-.|+.|+-|.+...+     +
T Consensus       225 l~~g-~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyl  303 (472)
T KOG0303|consen  225 LASG-KIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYL  303 (472)
T ss_pred             eccC-ceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEe
Confidence            8888 5555553   3778999998763 234456777777877778899888775 56679999999998544     2


Q ss_pred             ccc--ccCeEEEEECCCC
Q 004969          672 RDF--NMSILAAYTRPSS  687 (721)
Q Consensus       672 ~~~--~~~V~~v~fsP~~  687 (721)
                      ..|  ..+..++.|-|..
T Consensus       304 n~f~S~epQRG~g~mPKR  321 (472)
T KOG0303|consen  304 NTFSSKEPQRGMGFMPKR  321 (472)
T ss_pred             cccccCCccccccccccc
Confidence            222  2245556666654

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.75  E-value=9e-17  Score=185.87  Aligned_cols=198  Identities=17%  Similarity=0.288  Sum_probs=158.6

Q ss_pred             cCeEEEEEeCCCCCEEEEEECCCeEEEEECCC----------C--------eEEEEeecCCCCCCeEEEEEeeCCCCEEE
Q 004969          454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHEN----------E--------NIVSYIPSFGAMNSVLGLCWLKKYPSKLI  515 (721)
Q Consensus       454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~t----------g--------~~i~~l~~~~H~~~V~sl~fsp~d~~~La  515 (721)
                      ..|.|+.|+| ||.+||+|++|+.|.||....          |        +.+..+.  +|.+.|..++|+ +++.+|+
T Consensus        70 ~sv~CVR~S~-dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~--~H~~DV~Dv~Ws-p~~~~lv  145 (942)
T KOG0973|consen   70 GSVNCVRFSP-DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILR--GHDSDVLDVNWS-PDDSLLV  145 (942)
T ss_pred             CceeEEEECC-CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEe--cCCCccceeccC-CCccEEE
Confidence            3699999999 999999999999999999762          1        1344444  899999999999 5899999


Q ss_pred             EEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEE---------
Q 004969          516 AGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQ---------  586 (721)
Q Consensus       516 Sgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~---------  586 (721)
                      ++|.|++|.||+..+... .        .+.-.|...|-.+.|.|-|.+|++-++|++|++|...+....+         
T Consensus       146 S~s~DnsViiwn~~tF~~-~--------~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~  216 (942)
T KOG0973|consen  146 SVSLDNSVIIWNAKTFEL-L--------KVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEES  216 (942)
T ss_pred             EecccceEEEEcccccee-e--------eeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhC
Confidence            999999999999999633 2        2334566778999999999999999999999999965421111         


Q ss_pred             -------------------------------------------EEccccCCCeEEEEEcCC--------C----Cc----
Q 004969          587 -------------------------------------------VFADMHKEHINVVKFSNH--------S----PS----  607 (721)
Q Consensus       587 -------------------------------------------~l~~~h~~~V~sI~fsPd--------g----~~----  607 (721)
                                                                 .|.| |..++.++.|+|.        |    +.    
T Consensus       217 ~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvG-H~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~  295 (942)
T KOG0973|consen  217 PLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVG-HSAPVEVVRFNPKLFERNNKNGTSTQPNCYYC  295 (942)
T ss_pred             CCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeec-CCCceEEEEeChHHhccccccCCccCCCcceE
Confidence                                                       2334 8999999999983        1    11    


Q ss_pred             EEEEEECCCcEEEEECCCCCceeEEEec--CCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          608 IFATSSFDQDVKLWDLRQKPIQPCYTAS--SSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       608 lLaSgs~DgtIrIWDlrs~~~~~~~~~~--~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                      .+|+|+.|++|-||.....  .|++...  ....++.++|+|||..|++++.||+|.+..+.
T Consensus       296 i~AvgSqDrSlSVW~T~~~--RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fe  355 (942)
T KOG0973|consen  296 IAAVGSQDRSLSVWNTALP--RPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFE  355 (942)
T ss_pred             EEEEecCCccEEEEecCCC--CchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence            7899999999999999665  4444332  23344589999999999999999999999886

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.74  E-value=4.4e-17  Score=179.68  Aligned_cols=208  Identities=18%  Similarity=0.262  Sum_probs=175.3

Q ss_pred             cCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCC--CCEEEEEeCCCeEEEEEcCCC
Q 004969          454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKY--PSKLIAGSDNGSLKLYDIRHM  531 (721)
Q Consensus       454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d--~~~LaSgs~DGtVrIWDi~~~  531 (721)
                      +-+++++.+| ++++||+|..-|+++||++..-+....+.  +|...|.++.|+.+.  ..+|++++.|.-|.|||+...
T Consensus       460 ~G~R~~~vSp-~gqhLAsGDr~GnlrVy~Lq~l~~~~~~e--AHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn  536 (1080)
T KOG1408|consen  460 FGFRALAVSP-DGQHLASGDRGGNLRVYDLQELEYTCFME--AHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN  536 (1080)
T ss_pred             cceEEEEECC-CcceecccCccCceEEEEehhhhhhhhee--cccceeEEEeecCchhhhHhhhhccCCceEEEEecccc
Confidence            3589999999 99999999999999999999877777776  899999999998432  468999999999999999865


Q ss_pred             CCcccccccCccee---E--------------------------------e-c-----cCCCeEEEEEecCCCEEEEEeC
Q 004969          532 PPSIRGMHYGAGTV---T--------------------------------F-D-----EFDQLTSVHVNSMDELFLASGY  570 (721)
Q Consensus       532 ~~~~~~~~~~~~~~---~--------------------------------~-~-----~~~~V~sv~~sp~~~~lls~g~  570 (721)
                      -..++.+.+|...+   .                                | .     .+..++.+++.|...++++++.
T Consensus       537 y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQ  616 (1080)
T KOG1408|consen  537 YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQ  616 (1080)
T ss_pred             cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEec
Confidence            44443333222111   0                                0 0     2245889999999999999999


Q ss_pred             CCcEEEEECCCCcEEEEEccc--cCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEec
Q 004969          571 SKNIALYDINSGRRLQVFADM--HKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSP  647 (721)
Q Consensus       571 Dg~IrlWDl~s~~~v~~l~~~--h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSp  647 (721)
                      |..|+|||+.+|+.++.|++.  |.+..-.+...|.| .++|+.+.|.++.++|.-++++  +....+|...+ .+.|.+
T Consensus       617 Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSg-iY~atScsdktl~~~Df~sgEc--vA~m~GHsE~VTG~kF~n  693 (1080)
T KOG1408|consen  617 DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSG-IYLATSCSDKTLCFVDFVSGEC--VAQMTGHSEAVTGVKFLN  693 (1080)
T ss_pred             ccceEEEeccccceeeeecccccCCCceEEEEECCCc-cEEEEeecCCceEEEEeccchh--hhhhcCcchheeeeeecc
Confidence            999999999999999999963  55677889999999 8999999999999999999977  56677888888 899999


Q ss_pred             CCCEEEEEeCCCcEEEEEcC
Q 004969          648 DDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       648 dg~~Lasgs~Dg~I~VWDl~  667 (721)
                      |.+.|++.+.||.|.||.+.
T Consensus       694 DCkHlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  694 DCKHLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             cchhheeecCCceEEEEECc
Confidence            99999999999999999975

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.74  E-value=2.3e-18  Score=190.77  Aligned_cols=187  Identities=19%  Similarity=0.377  Sum_probs=161.1

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|.++.|++ ...+|++|+.+|+|++||++.++.++++.  ||...+.+|.|+ +.+.+.++|+.|+.+++||++...+ 
T Consensus        72 pIeSl~f~~-~E~LlaagsasgtiK~wDleeAk~vrtLt--gh~~~~~sv~f~-P~~~~~a~gStdtd~~iwD~Rk~Gc-  146 (825)
T KOG0267|consen   72 PIESLTFDT-SERLLAAGSASGTIKVWDLEEAKIVRTLT--GHLLNITSVDFH-PYGEFFASGSTDTDLKIWDIRKKGC-  146 (825)
T ss_pred             cceeeecCc-chhhhcccccCCceeeeehhhhhhhhhhh--ccccCcceeeec-cceEEeccccccccceehhhhccCc-
Confidence            589999999 88999999999999999999999999887  999999999999 6788999999999999999996443 


Q ss_pred             ccccccCcceeEec-cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969          535 IRGMHYGAGTVTFD-EFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS  613 (721)
Q Consensus       535 ~~~~~~~~~~~~~~-~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs  613 (721)
                               ...+. |...|..+.|+|+|.+++.++.|.+++|||+..|+....|.. |.+.+.++.|+|.. .++++|+
T Consensus       147 ---------~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~-~e~~v~sle~hp~e-~Lla~Gs  215 (825)
T KOG0267|consen  147 ---------SHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKS-HEGKVQSLEFHPLE-VLLAPGS  215 (825)
T ss_pred             ---------eeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccc-ccccccccccCchh-hhhccCC
Confidence                     22232 445678899999999999999999999999999999999997 99999999999998 8999999


Q ss_pred             CCCcEEEEECCCCCceeEEEecCCC-CeEEEEEecCCCEEEEEeCCC
Q 004969          614 FDQDVKLWDLRQKPIQPCYTASSSK-GNVMVCFSPDDHYLLGKGSGT  659 (721)
Q Consensus       614 ~DgtIrIWDlrs~~~~~~~~~~~~~-~~vsl~fSpdg~~Lasgs~Dg  659 (721)
                      .|+++++||+++...  +-...... ++.+.+|+|+|..+++|....
T Consensus       216 ~d~tv~f~dletfe~--I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  216 SDRTVRFWDLETFEV--ISSGKPETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             CCceeeeeccceeEE--eeccCCccCCceeeeecCCceeeecCchhh
Confidence            999999999997532  33333333 334899999999999886544

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=2.6e-16  Score=178.90  Aligned_cols=218  Identities=11%  Similarity=0.164  Sum_probs=174.0

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|.+++.   +.+++++|+.+++|.+|....+..-..+.  ...-++.+++|+ .+|+++|.||.|-.|++-+...... 
T Consensus        58 ~v~~ia~---~s~~f~~~s~~~tv~~y~fps~~~~~iL~--Rftlp~r~~~v~-g~g~~iaagsdD~~vK~~~~~D~s~-  130 (933)
T KOG1274|consen   58 LVSSIAC---YSNHFLTGSEQNTVLRYKFPSGEEDTILA--RFTLPIRDLAVS-GSGKMIAAGSDDTAVKLLNLDDSSQ-  130 (933)
T ss_pred             eeEEEee---cccceEEeeccceEEEeeCCCCCccceee--eeeccceEEEEe-cCCcEEEeecCceeEEEEeccccch-
Confidence            3555555   44799999999999999998776443333  224679999998 8899999999999999999887543 


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccc-------cCCCeEEEEEcCCCCc
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADM-------HKEHINVVKFSNHSPS  607 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~-------h~~~V~sI~fsPdg~~  607 (721)
                              ..+...|..+|.++.++|.+..+++++.||.|++||+.++....++.+.       -...+..++|+|+| .
T Consensus       131 --------~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~-g  201 (933)
T KOG1274|consen  131 --------EKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKG-G  201 (933)
T ss_pred             --------heeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCC-C
Confidence                    2344567789999999999999999999999999999998877766531       13456789999998 4


Q ss_pred             EEEEEECCCcEEEEECCCCCceeEEEecCCCC-eEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccccccCeEEEEECCC
Q 004969          608 IFATSSFDQDVKLWDLRQKPIQPCYTASSSKG-NVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPS  686 (721)
Q Consensus       608 lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~-~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~~~~~~V~~v~fsP~  686 (721)
                      .++..+.|+.|++|+..+...........+.. ...+.|+|+|.|||+++.+|.|.|||+..+..+.+...|.+.+|.|+
T Consensus       202 ~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~~~~~~~Vc~~aw~p~  281 (933)
T KOG1274|consen  202 TLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHERHEFKRAVCCEAWKPN  281 (933)
T ss_pred             eEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchhccccceeEEEecCCC
Confidence            77778889999999999885544443333333 44899999999999999999999999996555555678999999999


Q ss_pred             CC
Q 004969          687 SK  688 (721)
Q Consensus       687 ~~  688 (721)
                      ..
T Consensus       282 ~n  283 (933)
T KOG1274|consen  282 AN  283 (933)
T ss_pred             CC
Confidence            73

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.73  E-value=1.4e-15  Score=159.73  Aligned_cols=222  Identities=12%  Similarity=0.123  Sum_probs=157.6

Q ss_pred             eEEEEEeCCCCCEE-EEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEE-EEeCCCeEEEEEcCCCCC
Q 004969          456 PRQFEYHPSISCLM-VFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLI-AGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       456 V~~lafsP~dg~~L-asGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~La-Sgs~DGtVrIWDi~~~~~  533 (721)
                      +.+++|+| ++..+ ++++.++.|++||..+++....+.  .+. .+..++|+ ++++.++ +++.|+.|++||+.+.+.
T Consensus        33 ~~~l~~~~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--~~~-~~~~~~~~-~~g~~l~~~~~~~~~l~~~d~~~~~~  107 (300)
T TIGR03866        33 PRGITLSK-DGKLLYVCASDSDTIQVIDLATGEVIGTLP--SGP-DPELFALH-PNGKILYIANEDDNLVTVIDIETRKV  107 (300)
T ss_pred             CCceEECC-CCCEEEEEECCCCeEEEEECCCCcEEEecc--CCC-CccEEEEC-CCCCEEEEEcCCCCeEEEEECCCCeE
Confidence            56799999 77765 677889999999999988877665  332 35678888 5666554 556789999999987432


Q ss_pred             cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCC-cEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969          534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSK-NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS  612 (721)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg-~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg  612 (721)
                                ...+.....+.+++|+|++..+++++.++ .+.+||.++++.+....  ....+..++|+|++..+++++
T Consensus       108 ----------~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~  175 (300)
T TIGR03866       108 ----------LAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL--VDQRPRFAEFTADGKELWVSS  175 (300)
T ss_pred             ----------EeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE--cCCCccEEEECCCCCEEEEEc
Confidence                      12222233467899999999999888764 57788999888776554  334567899999994344566


Q ss_pred             ECCCcEEEEECCCCCceeEEEecC------CCCeEEEEEecCCCEEEEE-eCCCcEEEEEcCCCcc-c--ccccCeEEEE
Q 004969          613 SFDQDVKLWDLRQKPIQPCYTASS------SKGNVMVCFSPDDHYLLGK-GSGTSMFVQSLRGDPF-R--DFNMSILAAY  682 (721)
Q Consensus       613 s~DgtIrIWDlrs~~~~~~~~~~~------~~~~vsl~fSpdg~~Lasg-s~Dg~I~VWDl~g~~l-~--~~~~~V~~v~  682 (721)
                      ..++.|++||+++++.........      ...+..++|+|+|++++++ +.++.+.+||++.... .  .+...+.+++
T Consensus       176 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~  255 (300)
T TIGR03866       176 EIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLA  255 (300)
T ss_pred             CCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEE
Confidence            679999999999876543333221      1122368899999986554 5567899999974332 2  2245788999


Q ss_pred             ECCCCCcccccccEEEEec
Q 004969          683 TRPSSKSEIVKVNLLASTD  701 (721)
Q Consensus       683 fsP~~~~~~v~v~lLASgs  701 (721)
                      |+|++       ..|++++
T Consensus       256 ~~~~g-------~~l~~~~  267 (300)
T TIGR03866       256 FTPDE-------KYLLTTN  267 (300)
T ss_pred             ECCCC-------CEEEEEc
Confidence            99999       6666553

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=4.1e-16  Score=159.20  Aligned_cols=238  Identities=13%  Similarity=0.148  Sum_probs=171.6

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeE--EEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENI--VSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP  532 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~--i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~  532 (721)
                      .|++++|+. ||+.||+.+.|++|+||++..-..  -+.++..-.-+..+.+.|.|.....++++-...++++|.+...+
T Consensus        88 ~vt~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~  166 (420)
T KOG2096|consen   88 EVTDVAFSS-DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKT  166 (420)
T ss_pred             ceeeeEEcC-CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecc
Confidence            599999999 999999999999999999875221  01111101112467889987666777777777899999886533


Q ss_pred             C---cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEE
Q 004969          533 P---SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIF  609 (721)
Q Consensus       533 ~---~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lL  609 (721)
                      .   .........-...-.|...+..+-....+.++++++.|..|.+||++ |+.+..+.. ....-+..+.+|+| +++
T Consensus       167 dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt-nq~~n~~aavSP~G-RFi  243 (420)
T KOG2096|consen  167 DGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT-NQSSNYDAAVSPDG-RFI  243 (420)
T ss_pred             cCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc-ccccccceeeCCCC-cEE
Confidence            2   11000000000111233456667776677888899999999999999 998888875 55666778899999 899


Q ss_pred             EEEECCCcEEEEECC---CC---CceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC------Cc--cccc
Q 004969          610 ATSSFDQDVKLWDLR---QK---PIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG------DP--FRDF  674 (721)
Q Consensus       610 aSgs~DgtIrIWDlr---s~---~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g------~~--l~~~  674 (721)
                      ++++.-..|++|.+-   .+   +...++.+.+|...+ .++||++.+.+++.+.||+++|||+.-      +|  ++..
T Consensus       244 a~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g  323 (420)
T KOG2096|consen  244 AVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEG  323 (420)
T ss_pred             EEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcC
Confidence            999999999999873   22   234467889999888 899999999999999999999999751      11  2222


Q ss_pred             -------ccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          675 -------NMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       675 -------~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                             ......++.+|.+       .+||.+.+.
T Consensus       324 ~~pl~aag~~p~RL~lsP~g-------~~lA~s~gs  352 (420)
T KOG2096|consen  324 SAPLHAAGSEPVRLELSPSG-------DSLAVSFGS  352 (420)
T ss_pred             CcchhhcCCCceEEEeCCCC-------cEEEeecCC
Confidence                   3355689999999       677666665

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=1e-15  Score=155.87  Aligned_cols=240  Identities=11%  Similarity=0.131  Sum_probs=174.5

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCC--CeEEEEeecCCCCCCeEEEEEeeC-CCCEEEEEeCCCeEEEEEcCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHEN--ENIVSYIPSFGAMNSVLGLCWLKK-YPSKLIAGSDNGSLKLYDIRHM  531 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~t--g~~i~~l~~~~H~~~V~sl~fsp~-d~~~LaSgs~DGtVrIWDi~~~  531 (721)
                      -|.++.|.+ .|+++|+++.|++|+|||..+  |.-..+-....|.++|..|.|.++ -|+.+++++.|+++.||.-...
T Consensus        15 lihdVs~D~-~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~   93 (361)
T KOG2445|consen   15 LIHDVSFDF-YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEK   93 (361)
T ss_pred             eeeeeeecc-cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccc
Confidence            388999999 999999999999999999653  333333333489999999999644 4789999999999999987432


Q ss_pred             CCcccccccCcceeEeccCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCC------cEEEEEc------cccCCCeE
Q 004969          532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSM--DELFLASGYSKNIALYDINSG------RRLQVFA------DMHKEHIN  597 (721)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~--~~~lls~g~Dg~IrlWDl~s~------~~v~~l~------~~h~~~V~  597 (721)
                      .....+..-............|+++.|.|.  |-.+++++.||.+|||+.-.-      .....++      +.+..+..
T Consensus        94 ~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~  173 (361)
T KOG2445|consen   94 SEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCF  173 (361)
T ss_pred             ccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcce
Confidence            221111111111122234567999999886  567888889999999987643      2222332      23667888


Q ss_pred             EEEEcCCC--CcEEEEEECC-----CcEEEEECCCC--CceeEEEecCCCCeE-EEEEecC----CCEEEEEeCCCcEEE
Q 004969          598 VVKFSNHS--PSIFATSSFD-----QDVKLWDLRQK--PIQPCYTASSSKGNV-MVCFSPD----DHYLLGKGSGTSMFV  663 (721)
Q Consensus       598 sI~fsPdg--~~lLaSgs~D-----gtIrIWDlrs~--~~~~~~~~~~~~~~v-sl~fSpd----g~~Lasgs~Dg~I~V  663 (721)
                      |+.|+|..  +.+||+|+.+     +.++||.....  +...+.++.++..++ .++|.|+    -..||+++.|| |+|
T Consensus       174 CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I  252 (361)
T KOG2445|consen  174 CVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRI  252 (361)
T ss_pred             EEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEE
Confidence            99999753  3478888876     47888876543  455667788888888 8999994    35789999999 999


Q ss_pred             EEcCCC------------------------cccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          664 QSLRGD------------------------PFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       664 WDl~g~------------------------~l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      |.++..                        .+..|++.|..+.|+-.|       .+|+|.|..
T Consensus       253 ~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG-------tiLsStGdD  309 (361)
T KOG2445|consen  253 FKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG-------TILSSTGDD  309 (361)
T ss_pred             EEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee-------eEEeecCCC
Confidence            998731                        134567788888898888       788887766

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.73  E-value=1.2e-17  Score=175.47  Aligned_cols=222  Identities=17%  Similarity=0.232  Sum_probs=182.2

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe--EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN--IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP  532 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~--~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~  532 (721)
                      .|..+.|-+ +...|++|+.|..|++|++..++  .+.++.  |..++|+++.|- .++..+++++.|+.+++|++...+
T Consensus       177 ev~~v~~l~-~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLa--Gs~g~it~~d~d-~~~~~~iAas~d~~~r~Wnvd~~r  252 (459)
T KOG0288|consen  177 EVHDVEFLR-NSDTLATGGSDRIIKLWNVLGEKSELISTLA--GSLGNITSIDFD-SDNKHVIAASNDKNLRLWNVDSLR  252 (459)
T ss_pred             ccceeEEcc-Ccchhhhcchhhhhhhhhcccchhhhhhhhh--ccCCCcceeeec-CCCceEEeecCCCceeeeeccchh
Confidence            367899999 77899999999999999998766  445554  667899999997 778899999999999999999865


Q ss_pred             CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969          533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS  612 (721)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg  612 (721)
                      . ...+.        .|.+.|+++.|......+++|+.|.+|++||+....+.++..  ..+.+..|..++   ..+++|
T Consensus       253 ~-~~TLs--------GHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l--~~S~cnDI~~~~---~~~~Sg  318 (459)
T KOG0288|consen  253 L-RHTLS--------GHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL--PGSQCNDIVCSI---SDVISG  318 (459)
T ss_pred             h-hhhhc--------ccccceeeehhhccccceeeccccchhhhhhhhhhheecccc--ccccccceEecc---eeeeec
Confidence            4 12222        256788999997666668899999999999999998888876  566777787763   579999


Q ss_pred             ECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCccccc--------ccCeEEEEEC
Q 004969          613 SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDF--------NMSILAAYTR  684 (721)
Q Consensus       613 s~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~~~--------~~~V~~v~fs  684 (721)
                      ..|+.||+||.++..+  +...+.+....++..+++|..|.+.+.|.++.+.|+++..++..        ......+.||
T Consensus       319 H~DkkvRfwD~Rs~~~--~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfS  396 (459)
T KOG0288|consen  319 HFDKKVRFWDIRSADK--TRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFS  396 (459)
T ss_pred             ccccceEEEeccCCce--eeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEEC
Confidence            9999999999999854  56666666666999999999999999999999999996554321        2357889999


Q ss_pred             CCCCcccccccEEEEecCC
Q 004969          685 PSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       685 P~~~~~~v~v~lLASgs~~  703 (721)
                      |++       .++|+||..
T Consensus       397 pd~-------~YvaAGS~d  408 (459)
T KOG0288|consen  397 PDG-------SYVAAGSAD  408 (459)
T ss_pred             CCC-------ceeeeccCC
Confidence            999       888888876

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.73  E-value=1e-16  Score=163.88  Aligned_cols=224  Identities=15%  Similarity=0.288  Sum_probs=174.0

Q ss_pred             CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCC---eEEEEEeeCCCCEEEEEeCCCeEEEEEcCC-CCC-cccccc
Q 004969          465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNS---VLGLCWLKKYPSKLIAGSDNGSLKLYDIRH-MPP-SIRGMH  539 (721)
Q Consensus       465 dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~---V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~-~~~-~~~~~~  539 (721)
                      +..++++.+.+.-|++||.-+|+....+....|...   ..+++|+ +++.+|++| ...+|+++|+.. +.. .+....
T Consensus       122 ~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs-~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~  199 (406)
T KOG2919|consen  122 STNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFS-PDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTV  199 (406)
T ss_pred             ccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEec-CCCCeEeec-ccceEEEeeccCCCCCCcchhhh
Confidence            678999999999999999999999988887777654   4589998 789998875 556999999943 332 111100


Q ss_pred             cCcceeEeccCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE-CCCc
Q 004969          540 YGAGTVTFDEFDQLTSVHVNSMDE-LFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS-FDQD  617 (721)
Q Consensus       540 ~~~~~~~~~~~~~V~sv~~sp~~~-~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs-~Dgt  617 (721)
                      .   ...+...+-|.+++++|... .++.++...++-||.-..+.++..+-+ |.+.|+.++|.++| +.|.+|+ .|..
T Consensus       200 ~---~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llgg-h~gGvThL~~~edG-n~lfsGaRk~dk  274 (406)
T KOG2919|consen  200 T---KGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGG-HGGGVTHLQWCEDG-NKLFSGARKDDK  274 (406)
T ss_pred             h---cccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecc-cCCCeeeEEeccCc-CeecccccCCCe
Confidence            0   11223345588999999887 566667788888998888889988886 99999999999999 5666665 4788


Q ss_pred             EEEEECCCCCceeEEEecCCCCe----EEEEEecCCCEEEEEeCCCcEEEEEcC--CCc---ccccccCeEEEEECCCCC
Q 004969          618 VKLWDLRQKPIQPCYTASSSKGN----VMVCFSPDDHYLLGKGSGTSMFVQSLR--GDP---FRDFNMSILAAYTRPSSK  688 (721)
Q Consensus       618 IrIWDlrs~~~~~~~~~~~~~~~----vsl~fSpdg~~Lasgs~Dg~I~VWDl~--g~~---l~~~~~~V~~v~fsP~~~  688 (721)
                      |-.||+|... .+++.+..|.+.    +-....|+|++|++|+.||.|++||++  |.+   +..+...++.++++|-- 
T Consensus       275 Il~WDiR~~~-~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~m-  352 (406)
T KOG2919|consen  275 ILCWDIRYSR-DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIM-  352 (406)
T ss_pred             EEEEeehhcc-chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCccc-
Confidence            9999999853 556677666653    245557899999999999999999998  343   33446789999999998 


Q ss_pred             cccccccEEEEecCC
Q 004969          689 SEIVKVNLLASTDHC  703 (721)
Q Consensus       689 ~~~v~v~lLASgs~~  703 (721)
                            |++|++++.
T Consensus       353 ------pilatssGq  361 (406)
T KOG2919|consen  353 ------PILATSSGQ  361 (406)
T ss_pred             ------ceeeeccCc
Confidence                  999999987

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.72  E-value=1.8e-16  Score=173.99  Aligned_cols=230  Identities=17%  Similarity=0.229  Sum_probs=169.4

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      +|..++|-| ....|++++.|.++++||+++++++..--..||.+.|.+++|.|.+...|++|+.||.|.|||++-....
T Consensus       102 AifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d  180 (720)
T KOG0321|consen  102 AIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVD  180 (720)
T ss_pred             eeEeeccCC-CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchh
Confidence            588999999 8899999999999999999998887763334999999999999999999999999999999999854310


Q ss_pred             ---------cccccc---Ccce-----eE-eccCC----CeEEEEEecCCCEEEEEeC-CCcEEEEECCCCcEEEEEcc-
Q 004969          535 ---------IRGMHY---GAGT-----VT-FDEFD----QLTSVHVNSMDELFLASGY-SKNIALYDINSGRRLQVFAD-  590 (721)
Q Consensus       535 ---------~~~~~~---~~~~-----~~-~~~~~----~V~sv~~sp~~~~lls~g~-Dg~IrlWDl~s~~~v~~l~~-  590 (721)
                               .....+   +...     .. ..+..    .|+.+.| .+...++++|. |+.|++||++.......... 
T Consensus       181 ~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f-kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~  259 (720)
T KOG0321|consen  181 ALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF-KDESTLASAGAADSTIKVWDLRKNYTAYRQEPR  259 (720)
T ss_pred             hHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE-eccceeeeccCCCcceEEEeecccccccccCCC
Confidence                     000011   0000     00 01112    2445555 78889999887 99999999997544332210 


Q ss_pred             ------cc---CCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCe---EEEEEecCCCEEEEEeCC
Q 004969          591 ------MH---KEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGN---VMVCFSPDDHYLLGKGSG  658 (721)
Q Consensus       591 ------~h---~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~---vsl~fSpdg~~Lasgs~D  658 (721)
                            .|   ...+.++.....|.+++|+|. |+.|++|++++....++..+.++...   +.-..+||+.++++|+.|
T Consensus       260 ~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd  338 (720)
T KOG0321|consen  260 GSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSD  338 (720)
T ss_pred             cccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCC
Confidence                  12   345677777777855555555 99999999998766666665554332   245678999999999999


Q ss_pred             CcEEEEEcCCC-----cccccccCeEEEEECCCC
Q 004969          659 TSMFVQSLRGD-----PFRDFNMSILAAYTRPSS  687 (721)
Q Consensus       659 g~I~VWDl~g~-----~l~~~~~~V~~v~fsP~~  687 (721)
                      ...++|.+..-     .+.+|...|.++.|.|..
T Consensus       339 ~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~  372 (720)
T KOG0321|consen  339 EQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSA  372 (720)
T ss_pred             cceeeeeecCccCChhhhhCcceEEEEEeecccc
Confidence            99999998721     256778899999998865

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.72  E-value=5.1e-17  Score=173.53  Aligned_cols=227  Identities=11%  Similarity=0.155  Sum_probs=186.4

Q ss_pred             CccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 004969          452 RSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM  531 (721)
Q Consensus       452 ~~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~  531 (721)
                      ...+++++...| |++.|++|+.-.++.|||+......-........-...+++.+ ++.++.+++..||.|.|||+...
T Consensus       464 rdnyiRSckL~p-dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~s-pDakvcFsccsdGnI~vwDLhnq  541 (705)
T KOG0639|consen  464 RDNYIRSCKLLP-DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS-PDAKVCFSCCSDGNIAVWDLHNQ  541 (705)
T ss_pred             cccceeeeEecC-CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcC-CccceeeeeccCCcEEEEEcccc
Confidence            344799999999 9999999999999999999865543333322334567888887 78999999999999999999874


Q ss_pred             CCcccccccCcceeEe-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEE
Q 004969          532 PPSIRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFA  610 (721)
Q Consensus       532 ~~~~~~~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLa  610 (721)
                      ..          +..| .|.+.+.|+.++++|..+-+||-|.+||.||+++++.+....  ..+.|.++.+.|.+ .+++
T Consensus       542 ~~----------VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd--F~SQIfSLg~cP~~-dWla  608 (705)
T KOG0639|consen  542 TL----------VRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD--FSSQIFSLGYCPTG-DWLA  608 (705)
T ss_pred             ee----------eecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh--hhhhheecccCCCc-ccee
Confidence            32          2233 245678999999999999999999999999999998877665  67899999999999 7999


Q ss_pred             EEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC-CCccccc--ccCeEEEEECCC
Q 004969          611 TSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR-GDPFRDF--NMSILAAYTRPS  686 (721)
Q Consensus       611 Sgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~l~~~--~~~V~~v~fsP~  686 (721)
                      +|-..+.+.|-......   .+.+.-|...+ ++.|.+.|+|+++.+.|+.+..|... |..+-..  ..+|.+...+-+
T Consensus       609 vGMens~vevlh~skp~---kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~d  685 (705)
T KOG0639|consen  609 VGMENSNVEVLHTSKPE---KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFD  685 (705)
T ss_pred             eecccCcEEEEecCCcc---ceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeeeeccC
Confidence            99999998888776542   45566677777 99999999999999999999999987 5443222  458999999988


Q ss_pred             CCcccccccEEEEecCC
Q 004969          687 SKSEIVKVNLLASTDHC  703 (721)
Q Consensus       687 ~~~~~v~v~lLASgs~~  703 (721)
                      .       .+|+|||+.
T Consensus       686 d-------kyIVTGSGd  695 (705)
T KOG0639|consen  686 D-------KYIVTGSGD  695 (705)
T ss_pred             c-------eEEEecCCC
Confidence            8       999999998

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.72  E-value=2.1e-17  Score=171.03  Aligned_cols=193  Identities=19%  Similarity=0.281  Sum_probs=153.6

Q ss_pred             EEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccc
Q 004969          458 QFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRG  537 (721)
Q Consensus       458 ~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~  537 (721)
                      .|.-+. .++.++|++.  .|.|||.+...++..+..  ....|.++.|+|.....|++|+.|+.|.+||+++..+....
T Consensus       152 gIdh~~-~~~~FaTcGe--~i~IWD~~R~~Pv~smsw--G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KV  226 (433)
T KOG0268|consen  152 GIDHHR-KNSVFATCGE--QIDIWDEQRDNPVSSMSW--GADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKV  226 (433)
T ss_pred             cccccc-ccccccccCc--eeeecccccCCccceeec--CCCceeEEecCCCcchheeeeccCCceEEEecccCCcccee
Confidence            344444 4556666654  377888777777777763  34679999999888889999999999999999997763211


Q ss_pred             cccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC-CcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCC
Q 004969          538 MHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINS-GRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQ  616 (721)
Q Consensus       538 ~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s-~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~Dg  616 (721)
                      .          ....-+.++|+|..-.|+++..|..++.||++. .+++..+.+ |.+.|..+.|+|.| .-|++||.|.
T Consensus       227 i----------~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~d-hvsAV~dVdfsptG-~EfvsgsyDk  294 (433)
T KOG0268|consen  227 I----------LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKD-HVSAVMDVDFSPTG-QEFVSGSYDK  294 (433)
T ss_pred             e----------eeccccceecCccccceeeccccccceehhhhhhcccchhhcc-cceeEEEeccCCCc-chhccccccc
Confidence            1          112347899999888888888999999999996 457777777 99999999999999 7999999999


Q ss_pred             cEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          617 DVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       617 tIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                      +||||..+.+...-++....-...+++.||.|.+|+++||.|+.|++|.-.
T Consensus       295 sIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~  345 (433)
T KOG0268|consen  295 SIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK  345 (433)
T ss_pred             eEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence            999999998766555544434445599999999999999999999999865

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=1.4e-15  Score=173.08  Aligned_cols=224  Identities=15%  Similarity=0.195  Sum_probs=177.9

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCCC-eEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENE-NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg-~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      -+.|+|.| +|.+|++++.||.|++|+.... ....++.  .+...|.+++.   ..++|++|+.+++|.+|.+..+...
T Consensus        16 ~t~i~~d~-~gefi~tcgsdg~ir~~~~~sd~e~P~ti~--~~g~~v~~ia~---~s~~f~~~s~~~tv~~y~fps~~~~   89 (933)
T KOG1274|consen   16 LTLICYDP-DGEFICTCGSDGDIRKWKTNSDEEEPETID--ISGELVSSIAC---YSNHFLTGSEQNTVLRYKFPSGEED   89 (933)
T ss_pred             eEEEEEcC-CCCEEEEecCCCceEEeecCCcccCCchhh--ccCceeEEEee---cccceEEeeccceEEEeeCCCCCcc
Confidence            46799999 9999999999999999997655 3333332  25677888874   5679999999999999999987651


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF  614 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~  614 (721)
                               .+.....-++.+++++-+|.++++||+|-.|++.++........+.+ |.++|.++.|+|.+ +++|+.+.
T Consensus        90 ---------~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrg-h~apVl~l~~~p~~-~fLAvss~  158 (933)
T KOG1274|consen   90 ---------TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRG-HDAPVLQLSYDPKG-NFLAVSSC  158 (933)
T ss_pred             ---------ceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecc-cCCceeeeeEcCCC-CEEEEEec
Confidence                     11222335789999999999999999999999999999999999997 99999999999999 89999999


Q ss_pred             CCcEEEEECCCCCceeEEEe-----cCC-CCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCc----c--cccccCeEEE
Q 004969          615 DQDVKLWDLRQKPIQPCYTA-----SSS-KGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDP----F--RDFNMSILAA  681 (721)
Q Consensus       615 DgtIrIWDlrs~~~~~~~~~-----~~~-~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~----l--~~~~~~V~~v  681 (721)
                      ||.|++||+.++.+......     ... ..+. .++|+|+|..++..+.|+.|++|+..+-.    +  +.+...+..+
T Consensus       159 dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~  238 (933)
T KOG1274|consen  159 DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDL  238 (933)
T ss_pred             CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEE
Confidence            99999999998754322211     011 2222 69999998888888899999999887432    1  1223458889


Q ss_pred             EECCCCCcccccccEEEEecCC
Q 004969          682 YTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       682 ~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      .|+|.|       ..||+++..
T Consensus       239 ~wsPnG-------~YiAAs~~~  253 (933)
T KOG1274|consen  239 QWSPNG-------KYIAASTLD  253 (933)
T ss_pred             EEcCCC-------cEEeeeccC
Confidence            999999       888888776

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.71  E-value=4.5e-16  Score=169.64  Aligned_cols=247  Identities=13%  Similarity=0.159  Sum_probs=186.1

Q ss_pred             CCceeeeeccCCCCCCCCCccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCE
Q 004969          434 WPCLHTLTVSGNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSK  513 (721)
Q Consensus       434 ~p~~~~l~~~gh~~~~~~~~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~  513 (721)
                      .|....+...||..       .|+||..+| .|.+|++|+.||+|+||.+.+|.++.+++..   +.|.+|+|+|....-
T Consensus       388 FPt~~~lvyrGHtg-------~Vr~iSvdp-~G~wlasGsdDGtvriWEi~TgRcvr~~~~d---~~I~~vaw~P~~~~~  456 (733)
T KOG0650|consen  388 FPTRCALVYRGHTG-------LVRSISVDP-SGEWLASGSDDGTVRIWEIATGRCVRTVQFD---SEIRSVAWNPLSDLC  456 (733)
T ss_pred             CcceeeeeEeccCC-------eEEEEEecC-CcceeeecCCCCcEEEEEeecceEEEEEeec---ceeEEEEecCCCCce
Confidence            34444444455655       599999999 9999999999999999999999999998753   579999999755555


Q ss_pred             EEEEeCCCeEEEEEcCCCCCc--------cccc-------------c-------cCcceeEeccCCCeEEEEEecCCCEE
Q 004969          514 LIAGSDNGSLKLYDIRHMPPS--------IRGM-------------H-------YGAGTVTFDEFDQLTSVHVNSMDELF  565 (721)
Q Consensus       514 LaSgs~DGtVrIWDi~~~~~~--------~~~~-------------~-------~~~~~~~~~~~~~V~sv~~sp~~~~l  565 (721)
                      ++++...+.+.|-+..-+...        +...             .       ...-.+...|...|..+.||..|++|
T Consensus       457 vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYl  536 (733)
T KOG0650|consen  457 VLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYL  536 (733)
T ss_pred             eEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceE
Confidence            555555556666665433110        0000             0       00113456688899999999999999


Q ss_pred             EEEeC---CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-
Q 004969          566 LASGY---SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-  641 (721)
Q Consensus       566 ls~g~---Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-  641 (721)
                      ++...   ...|.|+++...+...-|.. ..+.|.++.|+|..+ +|++++ -..|||||+.....  +..+.....++ 
T Consensus       537 atV~~~~~~~~VliHQLSK~~sQ~PF~k-skG~vq~v~FHPs~p-~lfVaT-q~~vRiYdL~kqel--vKkL~tg~kwiS  611 (733)
T KOG0650|consen  537 ATVMPDSGNKSVLIHQLSKRKSQSPFRK-SKGLVQRVKFHPSKP-YLFVAT-QRSVRIYDLSKQEL--VKKLLTGSKWIS  611 (733)
T ss_pred             EEeccCCCcceEEEEecccccccCchhh-cCCceeEEEecCCCc-eEEEEe-ccceEEEehhHHHH--HHHHhcCCeeee
Confidence            99865   35699999987776666654 667899999999985 555555 36799999987533  33444455566 


Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEEcC--CCc---ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          642 MVCFSPDDHYLLGKGSGTSMFVQSLR--GDP---FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       642 sl~fSpdg~~Lasgs~Dg~I~VWDl~--g~~---l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      +++.+|.|.-|+.|+.|+.+..+|+.  .++   ++.|...+..++||+..       |++|||+-.
T Consensus       612 ~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ry-------PLfas~sdD  671 (733)
T KOG0650|consen  612 SMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRY-------PLFASGSDD  671 (733)
T ss_pred             eeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcccc-------ceeeeecCC
Confidence            79999999999999999999999987  334   56678899999999999       999999985

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.71  E-value=2.1e-16  Score=169.67  Aligned_cols=199  Identities=15%  Similarity=0.164  Sum_probs=152.0

Q ss_pred             ecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCC
Q 004969          493 PSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSK  572 (721)
Q Consensus       493 ~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg  572 (721)
                      +..+|...|.++++- +.|..|+|||.|-+|++||+...........    .+......+|.++.|++.++.|++.+...
T Consensus       162 ~l~hgtk~Vsal~~D-p~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr----~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a  236 (641)
T KOG0772|consen  162 QLKHGTKIVSALAVD-PSGARFVSGSLDYTVKFWDFQGMDASMRSFR----QLQPCETHQINSLQYSVTGDQILVVSGSA  236 (641)
T ss_pred             eccCCceEEEEeeec-CCCceeeeccccceEEEEecccccccchhhh----ccCcccccccceeeecCCCCeEEEEecCc
Confidence            334888999999997 7889999999999999999998654332211    11112234689999999999999999999


Q ss_pred             cEEEEECCCCcEEEEEc-----------cccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCc-eeEEEecCC---
Q 004969          573 NIALYDINSGRRLQVFA-----------DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPI-QPCYTASSS---  637 (721)
Q Consensus       573 ~IrlWDl~s~~~v~~l~-----------~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~-~~~~~~~~~---  637 (721)
                      ..+|+|..-.+.+...+           .+|...+++.+|+|.....|+|++.||++||||+...+. ..++.....   
T Consensus       237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~  316 (641)
T KOG0772|consen  237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK  316 (641)
T ss_pred             ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence            99999976433332221           148999999999999988999999999999999987532 223332221   


Q ss_pred             C-CeEEEEEecCCCEEEEEeCCCcEEEEEcCCCccc-------ccc--cCeEEEEECCCCCcccccccEEEEecCC
Q 004969          638 K-GNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFR-------DFN--MSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       638 ~-~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~-------~~~--~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      . .+.+++|+|||.+||+|..||+|.+|+.++...+       .|.  ..|.++.|+++|       ++|+|-|..
T Consensus       317 Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg-------~~LlSRg~D  385 (641)
T KOG0772|consen  317 RVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG-------NYLLSRGFD  385 (641)
T ss_pred             ccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc-------chhhhccCC
Confidence            1 1228999999999999999999999998644322       233  389999999999       999998876

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.71  E-value=4.2e-16  Score=157.37  Aligned_cols=227  Identities=15%  Similarity=0.220  Sum_probs=175.5

Q ss_pred             CeEEEEEeCCCCCEEEEEECC-------CeEEEEECCCCe---------EEEEeecCCCCCCeEEEEEeeCCCCEEEEEe
Q 004969          455 RPRQFEYHPSISCLMVFGTLD-------GEIVVVNHENEN---------IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS  518 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~D-------G~I~IWdl~tg~---------~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs  518 (721)
                      .|+.++-+|.+..+|++...+       -.+.||.+....         ++..+.. .+.+.|.++.|. |++..+++-.
T Consensus        65 Evw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldt-eavg~i~cvew~-Pns~klasm~  142 (370)
T KOG1007|consen   65 EVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDT-EAVGKINCVEWE-PNSDKLASMD  142 (370)
T ss_pred             ceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCH-HHhCceeeEEEc-CCCCeeEEec
Confidence            388999999888888887652       246799986421         2333332 445689999999 5788888765


Q ss_pred             CCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeE
Q 004969          519 DNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNS-MDELFLASGYSKNIALYDINSGRRLQVFADMHKEHIN  597 (721)
Q Consensus       519 ~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp-~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~  597 (721)
                       |..|.+|++......+..+....   ...+....++-+|+| .+...+++..|++++.||+|+.+....+..+|...|.
T Consensus       143 -dn~i~l~~l~ess~~vaev~ss~---s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vr  218 (370)
T KOG1007|consen  143 -DNNIVLWSLDESSKIVAEVLSSE---SAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVR  218 (370)
T ss_pred             -cCceEEEEcccCcchheeecccc---cccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceee
Confidence             78999999998766444333221   112344578889998 4555666677899999999999988888888999999


Q ss_pred             EEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEec-CCCEEEEEeCCCcEEEEEcCC-------
Q 004969          598 VVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSP-DDHYLLGKGSGTSMFVQSLRG-------  668 (721)
Q Consensus       598 sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSp-dg~~Lasgs~Dg~I~VWDl~g-------  668 (721)
                      .+.|+|+...+++||+.||.|||||+|..+ .+++.+++|..++ ++.|+| ..+.+++|+.|..|.+|....       
T Consensus       219 dlDfNpnkq~~lvt~gDdgyvriWD~R~tk-~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi  297 (370)
T KOG1007|consen  219 DLDFNPNKQHILVTCGDDGYVRIWDTRKTK-FPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQI  297 (370)
T ss_pred             eccCCCCceEEEEEcCCCccEEEEeccCCC-ccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccccc
Confidence            999999998899999999999999999854 6789999999999 999999 457778999999999986420       


Q ss_pred             ------------------C--------cccccccCeEEEEECCCCC
Q 004969          669 ------------------D--------PFRDFNMSILAAYTRPSSK  688 (721)
Q Consensus       669 ------------------~--------~l~~~~~~V~~v~fsP~~~  688 (721)
                                        +        .+..|+.+|.+++|+...+
T Consensus       298 ~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadP  343 (370)
T KOG1007|consen  298 EFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADP  343 (370)
T ss_pred             ccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCC
Confidence                              0        1334567999999998875

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.71  E-value=2e-15  Score=154.34  Aligned_cols=212  Identities=14%  Similarity=0.241  Sum_probs=158.3

Q ss_pred             EEEEECCCeEEEEECCC----------CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCccccc
Q 004969          469 MVFGTLDGEIVVVNHEN----------ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGM  538 (721)
Q Consensus       469 LasGs~DG~I~IWdl~t----------g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~  538 (721)
                      |++|++...|.=+++.-          ......+...+|.++|++++.+   +.+++|||.|-+|+|||+......    
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs---~~~~aSGssDetI~IYDm~k~~ql----   76 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS---GPYVASGSSDETIHIYDMRKRKQL----   76 (362)
T ss_pred             EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec---ceeEeccCCCCcEEEEeccchhhh----
Confidence            55666666555554421          1223344446899999999974   889999999999999999986542    


Q ss_pred             ccCcceeEeccCCCeEEEEEecCCC--EEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCC
Q 004969          539 HYGAGTVTFDEFDQLTSVHVNSMDE--LFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQ  616 (721)
Q Consensus       539 ~~~~~~~~~~~~~~V~sv~~sp~~~--~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~Dg  616 (721)
                           .....|.+.|+++.|.++-.  .+++|+.||.|.+|+......+..+++ |.+.|+.++.+|.| .+.++.+.|+
T Consensus        77 -----g~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~-H~~~Vt~lsiHPS~-KLALsVg~D~  149 (362)
T KOG0294|consen   77 -----GILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKA-HKGQVTDLSIHPSG-KLALSVGGDQ  149 (362)
T ss_pred             -----cceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecc-cccccceeEecCCC-ceEEEEcCCc
Confidence                 12334567789999987765  899999999999999999999999997 99999999999999 7999999999


Q ss_pred             cEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEE---------------------------------------EEeC
Q 004969          617 DVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLL---------------------------------------GKGS  657 (721)
Q Consensus       617 tIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~La---------------------------------------sgs~  657 (721)
                      .+++||+-.++...+..+.  .....+.|+|.|.+++                                       +|+.
T Consensus       150 ~lr~WNLV~Gr~a~v~~L~--~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d  227 (362)
T KOG0294|consen  150 VLRTWNLVRGRVAFVLNLK--NKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGD  227 (362)
T ss_pred             eeeeehhhcCccceeeccC--CcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecC
Confidence            9999999887543333332  2222466666666444                                       7888


Q ss_pred             CCcEEEEEcC-CCc---ccccccCeEEEE--ECCCCCcccccccEEEEecCC
Q 004969          658 GTSMFVQSLR-GDP---FRDFNMSILAAY--TRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       658 Dg~I~VWDl~-g~~---l~~~~~~V~~v~--fsP~~~~~~v~v~lLASgs~~  703 (721)
                      |+.|.+||.. +.+   +..|...|-.+.  -.|.+       .+|+|+|..
T Consensus       228 ~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~-------~~lvTaSSD  272 (362)
T KOG0294|consen  228 NEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEH-------EYLVTASSD  272 (362)
T ss_pred             CceEEEeccCCCccceeeecchhheeeeEEEecCCc-------eEEEEeccC
Confidence            8888899877 333   445566676665  35666       788888776

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.71  E-value=3.5e-15  Score=160.00  Aligned_cols=228  Identities=14%  Similarity=0.190  Sum_probs=176.5

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|.|+.|.+ +++ +++|..+|.|.||+..+.+..+...  .|.+.|.+++.. .+ ..|+||+.|..|..||-.-.+..
T Consensus       248 ~Vl~v~F~e-ngd-viTgDS~G~i~Iw~~~~~~~~k~~~--aH~ggv~~L~~l-r~-GtllSGgKDRki~~Wd~~y~k~r  321 (626)
T KOG2106|consen  248 FVLCVTFLE-NGD-VITGDSGGNILIWSKGTNRISKQVH--AHDGGVFSLCML-RD-GTLLSGGKDRKIILWDDNYRKLR  321 (626)
T ss_pred             EEEEEEEcC-CCC-EEeecCCceEEEEeCCCceEEeEee--ecCCceEEEEEe-cC-ccEeecCccceEEeccccccccc
Confidence            599999999 766 7899999999999997766666655  899999999986 44 45667999999999994322110


Q ss_pred             cccc-------------------------------ccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 004969          535 IRGM-------------------------------HYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR  583 (721)
Q Consensus       535 ~~~~-------------------------------~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~  583 (721)
                      ...+                               ...-....+.|.+....++.+|+.+.++++|.|+.+++|+  ..+
T Consensus       322 ~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k  399 (626)
T KOG2106|consen  322 ETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHK  399 (626)
T ss_pred             cccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCc
Confidence            0000                               1111223445667899999999999999999999999999  566


Q ss_pred             EEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 004969          584 RLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFV  663 (721)
Q Consensus       584 ~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~V  663 (721)
                      ++.+..  ...++.++.|+|.|  .+|.|...|..-+.|..+.....+.+  .......++|+|+|.+||.|+.|+.|++
T Consensus       400 ~~wt~~--~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv~~~~--d~~~ls~v~ysp~G~~lAvgs~d~~iyi  473 (626)
T KOG2106|consen  400 LEWTKI--IEDPAECADFHPSG--VVAVGTATGRWFVLDTETQDLVTIHT--DNEQLSVVRYSPDGAFLAVGSHDNHIYI  473 (626)
T ss_pred             eeEEEE--ecCceeEeeccCcc--eEEEeeccceEEEEecccceeEEEEe--cCCceEEEEEcCCCCEEEEecCCCeEEE
Confidence            766665  56789999999998  89999999999999999864433332  2333448999999999999999999999


Q ss_pred             EEcC--CCccc----ccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          664 QSLR--GDPFR----DFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       664 WDl~--g~~l~----~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      |-+.  |..+.    .+..++..+.|++++       +.+.+-++.
T Consensus       474 y~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds-------~~~~~~S~d  512 (626)
T KOG2106|consen  474 YRVSANGRKYSRVGKCSGSPITHLDWSSDS-------QFLVSNSGD  512 (626)
T ss_pred             EEECCCCcEEEEeeeecCceeEEeeecCCC-------ceEEeccCc
Confidence            9987  43322    224689999999999       777766665

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.71  E-value=6e-16  Score=157.29  Aligned_cols=192  Identities=16%  Similarity=0.225  Sum_probs=146.4

Q ss_pred             CCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEE
Q 004969          496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIA  575 (721)
Q Consensus       496 ~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~Ir  575 (721)
                      ...+.|.+++|+|....+++++|.||+||+|+++....       ..+.....+.++|.+++|+.+|..+++|+.|+.++
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~-------~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k   97 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ-------LVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAK   97 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCc-------ccchhhhccCCCeEEEEEccCCceEEeeccCCceE
Confidence            34578999999987778888999999999999987422       11233445778999999999999999999999999


Q ss_pred             EEECCCCcEEEEEccccCCCeEEEEEcCCCC-cEEEEEECCCcEEEEECCCCCceeEEEec-------------------
Q 004969          576 LYDINSGRRLQVFADMHKEHINVVKFSNHSP-SIFATSSFDQDVKLWDLRQKPIQPCYTAS-------------------  635 (721)
Q Consensus       576 lWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~-~lLaSgs~DgtIrIWDlrs~~~~~~~~~~-------------------  635 (721)
                      +||+.+++..+.-  +|.++|.++.|-+... ..|+|||.|.+||.||+|.........++                   
T Consensus        98 ~wDL~S~Q~~~v~--~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~  175 (347)
T KOG0647|consen   98 LWDLASGQVSQVA--AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAE  175 (347)
T ss_pred             EEEccCCCeeeee--ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecC
Confidence            9999999655443  3999999999987551 38999999999999999975432211111                   


Q ss_pred             ---------CC-------CC----eE-EEEEecCCCEEEEEeCCCcEEEEEcCC-C-----cccccc---------cCeE
Q 004969          636 ---------SS-------KG----NV-MVCFSPDDHYLLGKGSGTSMFVQSLRG-D-----PFRDFN---------MSIL  679 (721)
Q Consensus       636 ---------~~-------~~----~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g-~-----~l~~~~---------~~V~  679 (721)
                               +.       ..    -+ +++..+|..-.+.|+..|.+.|..+.. .     +++.|.         -.|+
T Consensus       176 r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVN  255 (347)
T KOG0647|consen  176 RHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVN  255 (347)
T ss_pred             CcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEec
Confidence                     10       00    02 567777777778899999999988873 2     245553         1577


Q ss_pred             EEEECCCCCcccccccEEEEecCC
Q 004969          680 AAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       680 ~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      .++|||..       ..|+|.|..
T Consensus       256 si~FhP~h-------gtlvTaGsD  272 (347)
T KOG0647|consen  256 SIAFHPVH-------GTLVTAGSD  272 (347)
T ss_pred             ceEeeccc-------ceEEEecCC
Confidence            89999988       889998886

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=4.8e-17  Score=188.75  Aligned_cols=222  Identities=18%  Similarity=0.288  Sum_probs=170.8

Q ss_pred             CeEEEEEeCCCCC----EEEEEECCCeEEEEECCC---Ce---EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEE
Q 004969          455 RPRQFEYHPSISC----LMVFGTLDGEIVVVNHEN---EN---IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLK  524 (721)
Q Consensus       455 ~V~~lafsP~dg~----~LasGs~DG~I~IWdl~t---g~---~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVr  524 (721)
                      +-..++|.+ .+.    +||.|..||.|.+||...   +.   .+.+.  ..|.+.|.++.|++..+++|++|+.||.|.
T Consensus        66 rF~kL~W~~-~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~--~~h~G~V~gLDfN~~q~nlLASGa~~geI~  142 (1049)
T KOG0307|consen   66 RFNKLAWGS-YGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATK--SKHTGPVLGLDFNPFQGNLLASGADDGEIL  142 (1049)
T ss_pred             cceeeeecc-cCCCccceeeccccCCceEEecchhhccCcchHHHhhh--cccCCceeeeeccccCCceeeccCCCCcEE
Confidence            456789988 333    599999999999999864   22   22333  379999999999988888999999999999


Q ss_pred             EEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEccccC--CCeEEEEE
Q 004969          525 LYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHK--EHINVVKF  601 (721)
Q Consensus       525 IWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~v~~l~~~h~--~~V~sI~f  601 (721)
                      |||+...+.....-       .....+.|.+++|+..-.++++++ .+|.+.|||++..+++..+.. +.  ..+..++|
T Consensus       143 iWDlnn~~tP~~~~-------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~-~~~~~~~S~l~W  214 (1049)
T KOG0307|consen  143 IWDLNKPETPFTPG-------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSD-TPGRMHCSVLAW  214 (1049)
T ss_pred             EeccCCcCCCCCCC-------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccccc-CCCccceeeeee
Confidence            99999844321110       122346799999998877766555 578999999999988888875 43  35789999


Q ss_pred             cCCCCcEEEEEECCC---cEEEEECCCCCceeEEEecCCCCeE-EEEEecCC-CEEEEEeCCCcEEEEEcCC-Cccccc-
Q 004969          602 SNHSPSIFATSSFDQ---DVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDD-HYLLGKGSGTSMFVQSLRG-DPFRDF-  674 (721)
Q Consensus       602 sPdg~~lLaSgs~Dg---tIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg-~~Lasgs~Dg~I~VWDl~g-~~l~~~-  674 (721)
                      +|++...+++++.|.   .|.+||+|.- ..++..+.+|...+ ++.|++.+ +++++++.|+.|.+|+.+. ..+-.+ 
T Consensus       215 hP~~aTql~~As~dd~~PviqlWDlR~a-ssP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p  293 (1049)
T KOG0307|consen  215 HPDHATQLLVASGDDSAPVIQLWDLRFA-SSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP  293 (1049)
T ss_pred             CCCCceeeeeecCCCCCceeEeeccccc-CCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC
Confidence            999988888888764   5999999974 24555666666555 99999966 8999999999999999883 333333 


Q ss_pred             --ccCeEEEEECCCCC
Q 004969          675 --NMSILAAYTRPSSK  688 (721)
Q Consensus       675 --~~~V~~v~fsP~~~  688 (721)
                        ...+..+.|.|...
T Consensus       294 ~~~nW~fdv~w~pr~P  309 (1049)
T KOG0307|consen  294 AQGNWCFDVQWCPRNP  309 (1049)
T ss_pred             CCCcceeeeeecCCCc
Confidence              45788899999874

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=9.9e-15  Score=161.56  Aligned_cols=226  Identities=16%  Similarity=0.193  Sum_probs=172.4

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEE-EEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIV-SYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i-~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~  533 (721)
                      .|+++||+. ..+.+|.|-.||.|-||++..+-.. ..+.. +....|-+++|+  ++..|.|.+.+|.|.-||+.+.++
T Consensus        27 ~I~slA~s~-kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g-~~drsIE~L~W~--e~~RLFS~g~sg~i~EwDl~~lk~  102 (691)
T KOG2048|consen   27 EIVSLAYSH-KSNQLAVSRTDGNIEIWNLSNNWFLEPVIHG-PEDRSIESLAWA--EGGRLFSSGLSGSITEWDLHTLKQ  102 (691)
T ss_pred             ceEEEEEec-cCCceeeeccCCcEEEEccCCCceeeEEEec-CCCCceeeEEEc--cCCeEEeecCCceEEEEecccCce
Confidence            589999999 7778999999999999999876543 34442 345789999997  678899999999999999999665


Q ss_pred             cccccccCcceeEec-cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEc-cccCCCeEEEEEcCCCCcEEEE
Q 004969          534 SIRGMHYGAGTVTFD-EFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFA-DMHKEHINVVKFSNHSPSIFAT  611 (721)
Q Consensus       534 ~~~~~~~~~~~~~~~-~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~-~~h~~~V~sI~fsPdg~~lLaS  611 (721)
                      .          .... ..+.|++++.+|.+..++.|++||.+..++...++...... ...++.|.+++|+|++ ..+++
T Consensus       103 ~----------~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~-~~i~~  171 (691)
T KOG2048|consen  103 K----------YNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTG-TKIAG  171 (691)
T ss_pred             e----------EEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCc-cEEEe
Confidence            2          2222 23569999999999999999999988888888777654322 1245899999999999 78999


Q ss_pred             EECCCcEEEEECCCCCceeEEEe-----cC-CCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC-CC---cccccccCeEE
Q 004969          612 SSFDQDVKLWDLRQKPIQPCYTA-----SS-SKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR-GD---PFRDFNMSILA  680 (721)
Q Consensus       612 gs~DgtIrIWDlrs~~~~~~~~~-----~~-~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~-g~---~l~~~~~~V~~  680 (721)
                      |+.||.|++||..++....+.+.     .. ....+ ++.|- ....|++|...|+|.+||-. |.   .++.|...|.+
T Consensus       172 Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~  250 (691)
T KOG2048|consen  172 GSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLA  250 (691)
T ss_pred             cccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeE
Confidence            99999999999998754432221     11 11122 56665 44578889999999999987 33   34556789999


Q ss_pred             EEECCCCCcccccccEEEEecCC
Q 004969          681 AYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       681 v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      ++..+++       +.+.+++..
T Consensus       251 Lav~~~~-------d~vfsaGvd  266 (691)
T KOG2048|consen  251 LAVADNE-------DRVFSAGVD  266 (691)
T ss_pred             EEEcCCC-------CeEEEccCC
Confidence            9999998       555555544

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.69  E-value=4.7e-15  Score=167.01  Aligned_cols=239  Identities=16%  Similarity=0.275  Sum_probs=183.4

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      +|++++|.-+...++|+|+..|.+.+||++..+.+..+.. .|.+.|....|. +....+++++.|..+++|=.+++...
T Consensus       246 ~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~n-ah~~sv~~~~fl-~~epVl~ta~~DnSlk~~vfD~~dg~  323 (910)
T KOG1539|consen  246 RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRN-AHYGSVTGATFL-PGEPVLVTAGADNSLKVWVFDSGDGV  323 (910)
T ss_pred             ceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeec-cccCCcccceec-CCCceEeeccCCCceeEEEeeCCCCc
Confidence            6999999985556788888889999999998777766653 788899999998 67789999999999998855521100


Q ss_pred             -----------------------------------c---------------c--------cc------------------
Q 004969          535 -----------------------------------I---------------R--------GM------------------  538 (721)
Q Consensus       535 -----------------------------------~---------------~--------~~------------------  538 (721)
                                                         .               +        ..                  
T Consensus       324 pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~  403 (910)
T KOG1539|consen  324 PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAF  403 (910)
T ss_pred             chheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeec
Confidence                                               0               0        00                  


Q ss_pred             ---------------cc------------CcceeEeccC------CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEE
Q 004969          539 ---------------HY------------GAGTVTFDEF------DQLTSVHVNSMDELFLASGYSKNIALYDINSGRRL  585 (721)
Q Consensus       539 ---------------~~------------~~~~~~~~~~------~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v  585 (721)
                                     .+            ..+...+.+.      ..+++++.++.|+..+.|.+.|+|-+|++.+|-..
T Consensus       404 ~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r  483 (910)
T KOG1539|consen  404 ENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHR  483 (910)
T ss_pred             ccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeee
Confidence                           00            0001111122      35889999999999999999999999999999988


Q ss_pred             EEEc--cccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCce----------------------------------
Q 004969          586 QVFA--DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQ----------------------------------  629 (721)
Q Consensus       586 ~~l~--~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~----------------------------------  629 (721)
                      ..|.  .+|.++|++++...-+ +.+++++.+|.+++||..+....                                  
T Consensus       484 ~sf~~~~ah~~~V~gla~D~~n-~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD  562 (910)
T KOG1539|consen  484 KSFGDSPAHKGEVTGLAVDGTN-RLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVD  562 (910)
T ss_pred             cccccCccccCceeEEEecCCC-ceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEE
Confidence            8883  3599999999998777 79999999999999998764310                                  


Q ss_pred             -----eEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC-CCccccc--ccCeEEEEECCCCCcccccccEEEEe
Q 004969          630 -----PCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR-GDPFRDF--NMSILAAYTRPSSKSEIVKVNLLAST  700 (721)
Q Consensus       630 -----~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~l~~~--~~~V~~v~fsP~~~~~~v~v~lLASg  700 (721)
                           .+..+.+|...+ .++|||||+||++++.|++|++||+. +..+-.+  ..+...+.|+|++       .+||+.
T Consensus       563 ~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPng-------D~LAT~  635 (910)
T KOG1539|consen  563 VVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNG-------DFLATV  635 (910)
T ss_pred             chhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCC-------CEEEEE
Confidence                 011233566666 89999999999999999999999998 4444333  5688899999999       888888


Q ss_pred             cCC
Q 004969          701 DHC  703 (721)
Q Consensus       701 s~~  703 (721)
                      ...
T Consensus       636 Hvd  638 (910)
T KOG1539|consen  636 HVD  638 (910)
T ss_pred             Eec
Confidence            765

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.68  E-value=1.8e-14  Score=151.36  Aligned_cols=203  Identities=13%  Similarity=0.111  Sum_probs=147.1

Q ss_pred             CEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEE-EEEeCCCeEEEEEcCCCCCcccccccCccee
Q 004969          467 CLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKL-IAGSDNGSLKLYDIRHMPPSIRGMHYGAGTV  545 (721)
Q Consensus       467 ~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~L-aSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~  545 (721)
                      .++++++.||.|++||+.+++.+..+.  .+ ..+.+++|+ +++..+ ++++.++.|++||..+++..          .
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~--~~-~~~~~l~~~-~dg~~l~~~~~~~~~v~~~d~~~~~~~----------~   67 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFP--VG-QRPRGITLS-KDGKLLYVCASDSDTIQVIDLATGEVI----------G   67 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEE--CC-CCCCceEEC-CCCCEEEEEECCCCeEEEEECCCCcEE----------E
Confidence            578899999999999999999888876  33 346789998 566655 67788999999999876431          1


Q ss_pred             EeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCC-cEEEEEC
Q 004969          546 TFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQ-DVKLWDL  623 (721)
Q Consensus       546 ~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~Dg-tIrIWDl  623 (721)
                      .+.....+..++++|+++.+++++ .++.+++||+++++.+..+.  +...+.+++|+|+| .++++++.++ .+.+||.
T Consensus        68 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~--~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~d~  144 (300)
T TIGR03866        68 TLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP--VGVEPEGMAVSPDG-KIVVNTSETTNMAHFIDT  144 (300)
T ss_pred             eccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee--CCCCcceEEECCCC-CEEEEEecCCCeEEEEeC
Confidence            111222346788999998887665 58999999999988887776  34457889999999 6787777765 5778899


Q ss_pred             CCCCceeEEEecCCCCeEEEEEecCCCEEEEE-eCCCcEEEEEcCCCc-ccccc----------cCeEEEEECCCCC
Q 004969          624 RQKPIQPCYTASSSKGNVMVCFSPDDHYLLGK-GSGTSMFVQSLRGDP-FRDFN----------MSILAAYTRPSSK  688 (721)
Q Consensus       624 rs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasg-s~Dg~I~VWDl~g~~-l~~~~----------~~V~~v~fsP~~~  688 (721)
                      +++.....  ......+..++|+|+|++++++ ..++.|++||++... .+.+.          .....+.|+|+++
T Consensus       145 ~~~~~~~~--~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~  219 (300)
T TIGR03866       145 KTYEIVDN--VLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGK  219 (300)
T ss_pred             CCCeEEEE--EEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCC
Confidence            87644322  2223344578999999988655 468999999998432 22211          1234578899984

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=8.1e-15  Score=150.30  Aligned_cols=181  Identities=22%  Similarity=0.306  Sum_probs=145.1

Q ss_pred             CCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC--CCcE
Q 004969          497 AMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY--SKNI  574 (721)
Q Consensus       497 H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~--Dg~I  574 (721)
                      ..+.|+++.|+ .+|..+++++.|.++++||...++..-.         ...++..+..++|......++.++.  |.+|
T Consensus        13 ~~~~i~sl~fs-~~G~~litss~dDsl~LYd~~~g~~~~t---------i~skkyG~~~~~Fth~~~~~i~sStk~d~tI   82 (311)
T KOG1446|consen   13 TNGKINSLDFS-DDGLLLITSSEDDSLRLYDSLSGKQVKT---------INSKKYGVDLACFTHHSNTVIHSSTKEDDTI   82 (311)
T ss_pred             CCCceeEEEec-CCCCEEEEecCCCeEEEEEcCCCceeeE---------eecccccccEEEEecCCceEEEccCCCCCce
Confidence            35789999998 8999999999999999999998765211         1112234566666666666666664  8999


Q ss_pred             EEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEE
Q 004969          575 ALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLG  654 (721)
Q Consensus       575 rlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Las  654 (721)
                      |..++.+.+.++.|.| |...|++++.+|-+ ..+++++.|++||+||+|..+++-.....+   ...++|+|+|-++|+
T Consensus        83 ryLsl~dNkylRYF~G-H~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~---~pi~AfDp~GLifA~  157 (311)
T KOG1446|consen   83 RYLSLHDNKYLRYFPG-HKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLNLSG---RPIAAFDPEGLIFAL  157 (311)
T ss_pred             EEEEeecCceEEEcCC-CCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEecCC---CcceeECCCCcEEEE
Confidence            9999999999999998 99999999999998 799999999999999999887765544332   224799999999999


Q ss_pred             EeCCCcEEEEEcC---CCccccc------ccCeEEEEECCCCCcccc
Q 004969          655 KGSGTSMFVQSLR---GDPFRDF------NMSILAAYTRPSSKSEIV  692 (721)
Q Consensus       655 gs~Dg~I~VWDl~---g~~l~~~------~~~V~~v~fsP~~~~~~v  692 (721)
                      +...+.|++||+|   +.|+..+      ......+.|+|+|++-.+
T Consensus       158 ~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLl  204 (311)
T KOG1446|consen  158 ANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILL  204 (311)
T ss_pred             ecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEE
Confidence            9988899999998   4566655      235778999999975444

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=3.1e-15  Score=155.80  Aligned_cols=158  Identities=12%  Similarity=0.147  Sum_probs=128.9

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECC------CCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcC
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHE------NENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIR  529 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~------tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~  529 (721)
                      |.++.|+. ++.+||+|+.|..+++|+++      +.+++... .+.|...|.+++|. ..+.++++|+.+|+|...|++
T Consensus        59 iNAlqFS~-N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~-~~~H~SNIF~L~F~-~~N~~~~SG~~~~~VI~HDiE  135 (609)
T KOG4227|consen   59 INALQFSH-NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVM-EHPHRSNIFSLEFD-LENRFLYSGERWGTVIKHDIE  135 (609)
T ss_pred             cceeeecc-CCeEEeecCCcceeeeechHHHHhhcCCCCceec-cCccccceEEEEEc-cCCeeEecCCCcceeEeeecc
Confidence            88999999 89999999999999999985      33444433 34677899999997 778899999999999999999


Q ss_pred             CCCCcccccccCcceeEeccC---CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc-EEEEEc-cccCCCeEEEEEcCC
Q 004969          530 HMPPSIRGMHYGAGTVTFDEF---DQLTSVHVNSMDELFLASGYSKNIALYDINSGR-RLQVFA-DMHKEHINVVKFSNH  604 (721)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~~---~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~-~v~~l~-~~h~~~V~sI~fsPd  604 (721)
                      +.+.          ...+.+.   +.|+.+..+|.++.+++.+.+|.|.+||.+... ++.-+. ........++.|+|.
T Consensus       136 t~qs----------i~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~  205 (609)
T KOG4227|consen  136 TKQS----------IYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE  205 (609)
T ss_pred             ccee----------eeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCC
Confidence            8543          3334444   379999999999999999999999999999654 222221 125667889999999


Q ss_pred             CCcEEEEEECCCcEEEEECCCC
Q 004969          605 SPSIFATSSFDQDVKLWDLRQK  626 (721)
Q Consensus       605 g~~lLaSgs~DgtIrIWDlrs~  626 (721)
                      .|.++++.+..+-+-+||.|..
T Consensus       206 ~P~Li~~~~~~~G~~~~D~R~~  227 (609)
T KOG4227|consen  206 TPALILVNSETGGPNVFDRRMQ  227 (609)
T ss_pred             CceeEEeccccCCCCceeeccc
Confidence            9999999999999999999863

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.67  E-value=2.6e-15  Score=166.33  Aligned_cols=219  Identities=16%  Similarity=0.253  Sum_probs=171.0

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEE-EEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLG-LCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~s-l~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      |+.+++.+  +..+++|+.||++++|+-..++...+....+|.+.|.. +++.+.++..+++|+.|++|.+|...+..+.
T Consensus        17 Vr~v~~~~--~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~   94 (745)
T KOG0301|consen   17 VRAVAVTD--GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPL   94 (745)
T ss_pred             hheeEecC--CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCch
Confidence            55666554  45799999999999999887776665555578888877 8887556667999999999999999886652


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF  614 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~  614 (721)
                       ..        -..|...|.+++...++. +++|+.|.++++|-.  ++....+.+ |+..|++++.-|++  .++|||.
T Consensus        95 -~~--------LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~g-H~asVWAv~~l~e~--~~vTgsa  159 (745)
T KOG0301|consen   95 -YT--------LKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQG-HTASVWAVASLPEN--TYVTGSA  159 (745)
T ss_pred             -hh--------hhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCC-cchheeeeeecCCC--cEEeccC
Confidence             22        234556788888755444 899999999999965  556666886 99999999999987  8999999


Q ss_pred             CCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCccc---ccccCeEEEEECCCCCcc
Q 004969          615 DQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDPFR---DFNMSILAAYTRPSSKSE  690 (721)
Q Consensus       615 DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~---~~~~~V~~v~fsP~~~~~  690 (721)
                      |.+||+|.-.+  .  +.++.+|...+ .+++-+++.+ ++++.||.|+.|++.|..+.   +|..-|.++...+..   
T Consensus       160 DKtIklWk~~~--~--l~tf~gHtD~VRgL~vl~~~~f-lScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~---  231 (745)
T KOG0301|consen  160 DKTIKLWKGGT--L--LKTFSGHTDCVRGLAVLDDSHF-LSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSD---  231 (745)
T ss_pred             cceeeeccCCc--h--hhhhccchhheeeeEEecCCCe-EeecCCceEEEEeccCceeeeeeccceEEEEEEecCCC---
Confidence            99999998643  2  55678899988 7888877555 56788999999999877654   456678888865655   


Q ss_pred             cccccEEEEecCC
Q 004969          691 IVKVNLLASTDHC  703 (721)
Q Consensus       691 ~v~v~lLASgs~~  703 (721)
                          .+++|++..
T Consensus       232 ----~~Ivs~gED  240 (745)
T KOG0301|consen  232 ----GLIVSTGED  240 (745)
T ss_pred             ----CeEEEecCC
Confidence                677887765

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=1.8e-14  Score=153.41  Aligned_cols=233  Identities=16%  Similarity=0.198  Sum_probs=182.1

Q ss_pred             cCeEEEEEeCCCCC-EEEEEECCCeEEEEECCCCeEEEEeecCCCC-CCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 004969          454 FRPRQFEYHPSISC-LMVFGTLDGEIVVVNHENENIVSYIPSFGAM-NSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM  531 (721)
Q Consensus       454 ~~V~~lafsP~dg~-~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~-~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~  531 (721)
                      +++.+..|.| +|. .+++++.....+.||+.+.+..+.-+..++. ..+.....+ +++++|+..|..|.|.+....++
T Consensus       258 fPi~~a~f~p-~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVS-hd~~fia~~G~~G~I~lLhakT~  335 (514)
T KOG2055|consen  258 FPIQKAEFAP-NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVS-HDSNFIAIAGNNGHIHLLHAKTK  335 (514)
T ss_pred             CccceeeecC-CCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEec-CCCCeEEEcccCceEEeehhhhh
Confidence            4688999999 666 9999999999999999988876655544554 356666766 78899999999999999998886


Q ss_pred             CCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEE
Q 004969          532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFAT  611 (721)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaS  611 (721)
                      ..          ...+...+.|..++|++++..+++++.+|.|.+||+++..+++.+.....-.-++++.++++ .++|+
T Consensus       336 el----------i~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng-~ylA~  404 (514)
T KOG2055|consen  336 EL----------ITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNG-SYLAT  404 (514)
T ss_pred             hh----------hheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCC-ceEEe
Confidence            54          34555567789999999999999999999999999999999999883222233567778888 79999


Q ss_pred             EECCCcEEEEECCC----CCceeEEEecCCCCeE-EEEEecCCCEEEEEeC--CCcEEEEEcCCCc-cccc------ccC
Q 004969          612 SSFDQDVKLWDLRQ----KPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGS--GTSMFVQSLRGDP-FRDF------NMS  677 (721)
Q Consensus       612 gs~DgtIrIWDlrs----~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~--Dg~I~VWDl~g~~-l~~~------~~~  677 (721)
                      |+..|.|.|||..+    ..+.|+..+..-...+ ++.|+||++.|+.++.  ++.+++-.+...+ +..+      -+.
T Consensus       405 GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~  484 (514)
T KOG2055|consen  405 GSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGH  484 (514)
T ss_pred             ccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccc
Confidence            99999999999654    3456666665544455 8999999999987764  5677776665321 2222      247


Q ss_pred             eEEEEECCCCCcccccccEEEEecCCCcc
Q 004969          678 ILAAYTRPSSKSEIVKVNLLASTDHCDKE  706 (721)
Q Consensus       678 V~~v~fsP~~~~~~v~v~lLASgs~~~ke  706 (721)
                      |.+++|+|.+       -.+|.|....+-
T Consensus       485 vtc~aFSP~s-------G~lAvGNe~grv  506 (514)
T KOG2055|consen  485 VTCMAFSPNS-------GYLAVGNEAGRV  506 (514)
T ss_pred             eEEEEecCCC-------ceEEeecCCCce
Confidence            9999999999       899998877443

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.66  E-value=4.4e-15  Score=151.58  Aligned_cols=182  Identities=19%  Similarity=0.244  Sum_probs=138.1

Q ss_pred             cCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969          454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~  533 (721)
                      .++.+++|.+  ...+++|+.||.|+.+|+.++.....-   .|..+|.+|.++ +..+.+++||+|++|++||.+....
T Consensus        55 ~plL~c~F~d--~~~~~~G~~dg~vr~~Dln~~~~~~ig---th~~~i~ci~~~-~~~~~vIsgsWD~~ik~wD~R~~~~  128 (323)
T KOG1036|consen   55 APLLDCAFAD--ESTIVTGGLDGQVRRYDLNTGNEDQIG---THDEGIRCIEYS-YEVGCVISGSWDKTIKFWDPRNKVV  128 (323)
T ss_pred             CceeeeeccC--CceEEEeccCceEEEEEecCCcceeec---cCCCceEEEEee-ccCCeEEEcccCccEEEEecccccc
Confidence            3688999987  467999999999999999988765433   688999999998 6778999999999999999996322


Q ss_pred             cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc---------------EEE------------
Q 004969          534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR---------------RLQ------------  586 (721)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~---------------~v~------------  586 (721)
                                ...+.....|.++..  .++.+++|+.|..+.+||+++..               .+.            
T Consensus       129 ----------~~~~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sS  196 (323)
T KOG1036|consen  129 ----------VGTFDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSS  196 (323)
T ss_pred             ----------ccccccCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEe
Confidence                      223333346677766  56777777778888888877531               111            


Q ss_pred             ---------------------EEccccC---------CCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecC
Q 004969          587 ---------------------VFADMHK---------EHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASS  636 (721)
Q Consensus       587 ---------------------~l~~~h~---------~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~  636 (721)
                                           .|+. |.         .+|++|+|+|-. ..||||+.||.|-+||+.+.+.  +..+..
T Consensus       197 ieGRVavE~~d~s~~~~skkyaFkC-Hr~~~~~~~~~yPVNai~Fhp~~-~tfaTgGsDG~V~~Wd~~~rKr--l~q~~~  272 (323)
T KOG1036|consen  197 IEGRVAVEYFDDSEEAQSKKYAFKC-HRLSEKDTEIIYPVNAIAFHPIH-GTFATGGSDGIVNIWDLFNRKR--LKQLAK  272 (323)
T ss_pred             ecceEEEEccCCchHHhhhceeEEe-eecccCCceEEEEeceeEecccc-ceEEecCCCceEEEccCcchhh--hhhccC
Confidence                                 1221 21         368999999987 6999999999999999998743  444555


Q ss_pred             CCCeE-EEEEecCCCEEEEEeC
Q 004969          637 SKGNV-MVCFSPDDHYLLGKGS  657 (721)
Q Consensus       637 ~~~~v-sl~fSpdg~~Lasgs~  657 (721)
                      ....+ +++|+.+|..||+++.
T Consensus       273 ~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  273 YETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             CCCceEEEEeccCCCeEEEEec
Confidence            54444 8999999999999873

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=2.8e-16  Score=182.53  Aligned_cols=208  Identities=17%  Similarity=0.249  Sum_probs=164.9

Q ss_pred             CccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 004969          452 RSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM  531 (721)
Q Consensus       452 ~~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~  531 (721)
                      |...|+.+.|++..++++|+|+.||.|.|||+.+-+.-.......-...|.+++|+......|++++.+|.+.|||++..
T Consensus       115 h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~  194 (1049)
T KOG0307|consen  115 HTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK  194 (1049)
T ss_pred             cCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC
Confidence            33469999999977889999999999999999875443333222345789999999777789999999999999999997


Q ss_pred             CCcccccccCcceeEeccCCCeEEEEEecCCC-EEEEEeC-C--CcEEEEECCC-CcEEEEEccccCCCeEEEEEcCCCC
Q 004969          532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDE-LFLASGY-S--KNIALYDINS-GRRLQVFADMHKEHINVVKFSNHSP  606 (721)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~-~lls~g~-D--g~IrlWDl~s-~~~v~~l~~~h~~~V~sI~fsPdg~  606 (721)
                      +..+..-....       ...+..+.|||++. .+++++. |  -.|.+||+|. ..+++++.+ |...|.++.|.+.++
T Consensus       195 ~pii~ls~~~~-------~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~-H~~GilslsWc~~D~  266 (1049)
T KOG0307|consen  195 KPIIKLSDTPG-------RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEG-HQRGILSLSWCPQDP  266 (1049)
T ss_pred             CcccccccCCC-------ccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcc-cccceeeeccCCCCc
Confidence            65333222111       13468999999874 3444443 3  4699999995 567788876 999999999999998


Q ss_pred             cEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCC-EEEEEeCCCcEEEEEcCCC
Q 004969          607 SIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDH-YLLGKGSGTSMFVQSLRGD  669 (721)
Q Consensus       607 ~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~-~Lasgs~Dg~I~VWDl~g~  669 (721)
                      .++++++.|+.|.+|+..+++.  +..+.....++ .+.|.|... .+++++-||.|.||.+.+.
T Consensus       267 ~lllSsgkD~~ii~wN~~tgEv--l~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~  329 (1049)
T KOG0307|consen  267 RLLLSSGKDNRIICWNPNTGEV--LGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT  329 (1049)
T ss_pred             hhhhcccCCCCeeEecCCCceE--eeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence            9999999999999999999854  66677666676 899999766 7788899999999998843

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=1.3e-14  Score=143.78  Aligned_cols=223  Identities=15%  Similarity=0.211  Sum_probs=158.3

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCC--------CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEE
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHEN--------ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYD  527 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~t--------g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWD  527 (721)
                      |.+-+|+| .++++++|..+|+|.+..+.+        ......++..+|.++|..++|.   ..+|++|+. |.|+-|.
T Consensus        13 vf~qa~sp-~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~---d~~Lls~gd-G~V~gw~   87 (325)
T KOG0649|consen   13 VFAQAISP-SKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH---DDFLLSGGD-GLVYGWE   87 (325)
T ss_pred             HHHHhhCC-cceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee---hhheeeccC-ceEEEee
Confidence            45567899 899999999999999998752        1112233335999999999996   467777765 9999998


Q ss_pred             cCCCCCcccccccCcceeE----eccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcC
Q 004969          528 IRHMPPSIRGMHYGAGTVT----FDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSN  603 (721)
Q Consensus       528 i~~~~~~~~~~~~~~~~~~----~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsP  603 (721)
                      .+..........-......    ...--.|+++...|..+.++.++.|+.++-||+++|+..+++++ |++.|.++.--.
T Consensus        88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rG-HtDYvH~vv~R~  166 (325)
T KOG0649|consen   88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRG-HTDYVHSVVGRN  166 (325)
T ss_pred             ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcC-Ccceeeeeeecc
Confidence            7754331111100000000    11123589999999999999989999999999999999999998 999999998844


Q ss_pred             CCCcEEEEEECCCcEEEEECCCCCceeEEEecC-------CCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCc---ccc
Q 004969          604 HSPSIFATSSFDQDVKLWDLRQKPIQPCYTASS-------SKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDP---FRD  673 (721)
Q Consensus       604 dg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~-------~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~---l~~  673 (721)
                      .. ..+++|+.||++|+||++++++..+.....       +.+..-.+..-+..++++|+ .-.+.+|.++...   .-+
T Consensus       167 ~~-~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg-Gp~lslwhLrsse~t~vfp  244 (325)
T KOG0649|consen  167 AN-GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG-GPKLSLWHLRSSESTCVFP  244 (325)
T ss_pred             cC-cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC-CCceeEEeccCCCceEEEe
Confidence            44 378999999999999999987765543222       22222245556788999876 6688999998432   233


Q ss_pred             cccCeEEEEECCC
Q 004969          674 FNMSILAAYTRPS  686 (721)
Q Consensus       674 ~~~~V~~v~fsP~  686 (721)
                      +...+..+.|--+
T Consensus       245 ipa~v~~v~F~~d  257 (325)
T KOG0649|consen  245 IPARVHLVDFVDD  257 (325)
T ss_pred             cccceeEeeeecc
Confidence            3556666666544

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=3.9e-15  Score=153.61  Aligned_cols=191  Identities=14%  Similarity=0.330  Sum_probs=152.2

Q ss_pred             CEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeC-CCCEEEEEeCCCeEEEEEcCCCCCcccccccCccee
Q 004969          467 CLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKK-YPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTV  545 (721)
Q Consensus       467 ~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~-d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~  545 (721)
                      ..+|++...|.|++||..+|+.+..++  ++...+..+.|... .+..+.+|+.||+|++||++.....-        ..
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk--~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a--------~~  110 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFK--GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA--------RI  110 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheec--CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh--------he
Confidence            678999999999999999999999888  78888889999743 56789999999999999999865522        12


Q ss_pred             EeccC--CCeEEEEEecCCCEEEEEe----CCCcEEEEECCCCcE-EEEEccccCCCeEEEEEcCCCCcEEEEEECCCcE
Q 004969          546 TFDEF--DQLTSVHVNSMDELFLASG----YSKNIALYDINSGRR-LQVFADMHKEHINVVKFSNHSPSIFATSSFDQDV  618 (721)
Q Consensus       546 ~~~~~--~~V~sv~~sp~~~~lls~g----~Dg~IrlWDl~s~~~-v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtI  618 (721)
                      .+...  .+..+++.+..++.+++|.    .+..|.+||+|..+. +..+...|...|+++.|+|..++++++||.||.|
T Consensus       111 ~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLv  190 (376)
T KOG1188|consen  111 SWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLV  190 (376)
T ss_pred             eccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceE
Confidence            22222  3567788766777777775    367899999998766 7788777999999999999999999999999999


Q ss_pred             EEEECCCCCc-eeEEEecCCCCeE-EEEEecCC-CEEEEEeCCCcEEEEEcC
Q 004969          619 KLWDLRQKPI-QPCYTASSSKGNV-MVCFSPDD-HYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       619 rIWDlrs~~~-~~~~~~~~~~~~v-sl~fSpdg-~~Lasgs~Dg~I~VWDl~  667 (721)
                      .+||+....- .++...-.+...+ ++.|..++ +.|.+-+..++..+|+++
T Consensus       191 nlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele  242 (376)
T KOG1188|consen  191 NLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELE  242 (376)
T ss_pred             EeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEcc
Confidence            9999986421 1223333444545 89999887 457778889999999987

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.64  E-value=5.3e-15  Score=149.77  Aligned_cols=197  Identities=17%  Similarity=0.180  Sum_probs=151.7

Q ss_pred             CCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC--cccccccCcceeEec----cCCCeEEEEEecCCCE-EEEE
Q 004969          496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP--SIRGMHYGAGTVTFD----EFDQLTSVHVNSMDEL-FLAS  568 (721)
Q Consensus       496 ~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~--~~~~~~~~~~~~~~~----~~~~V~sv~~sp~~~~-lls~  568 (721)
                      .|.+.|+++..-+..++++++|+.||.|.+||++....  .....-.+...+..+    |.-.|.++.|-|-+.- |.++
T Consensus        41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss  120 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS  120 (397)
T ss_pred             cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence            57789999998888899999999999999999986431  000111122222222    4456999999987654 5555


Q ss_pred             eCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCC--cEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEE
Q 004969          569 GYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSP--SIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCF  645 (721)
Q Consensus       569 g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~--~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~f  645 (721)
                      +-|.++++||..+-+....|+  ..+.|++-+++|-..  .++|+|..|-.|++-|+.++.+  .+.+.+|.+.+ ++.|
T Consensus       121 SFDhtlKVWDtnTlQ~a~~F~--me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~--sH~LsGHr~~vlaV~W  196 (397)
T KOG4283|consen  121 SFDHTLKVWDTNTLQEAVDFK--MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF--SHTLSGHRDGVLAVEW  196 (397)
T ss_pred             cccceEEEeecccceeeEEee--cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc--eeeeccccCceEEEEe
Confidence            579999999999999988887  778899999988542  5888999999999999999965  67788998888 9999


Q ss_pred             ecCCCE-EEEEeCCCcEEEEEcCCC--cc-----------------cccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          646 SPDDHY-LLGKGSGTSMFVQSLRGD--PF-----------------RDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       646 Spdg~~-Lasgs~Dg~I~VWDl~g~--~l-----------------~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      +|...| |++|+.||.|++||++..  .+                 ..|.+.|.+++|..++       ..+++++..
T Consensus       197 sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~-------~~l~~~gtd  267 (397)
T KOG4283|consen  197 SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA-------RYLASCGTD  267 (397)
T ss_pred             ccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccc-------hhhhhccCc
Confidence            997776 478899999999999832  11                 1235688999999998       667776665

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.64  E-value=1.2e-14  Score=147.08  Aligned_cols=237  Identities=12%  Similarity=0.168  Sum_probs=177.0

Q ss_pred             CccCeEEEEEeCCC----CCEEEEEECCCeEEEEECCCC--eEE-----EEeecCCCCCCeEEEEEeeCCCCEEEEEeCC
Q 004969          452 RSFRPRQFEYHPSI----SCLMVFGTLDGEIVVVNHENE--NIV-----SYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN  520 (721)
Q Consensus       452 ~~~~V~~lafsP~d----g~~LasGs~DG~I~IWdl~tg--~~i-----~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D  520 (721)
                      +...++.+-|.|+.    ..+||+.+  -.+|+|.+...  +..     ..-+...+..++++..|+..+.+++.++|-|
T Consensus        95 ~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiD  172 (364)
T KOG0290|consen   95 HPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSID  172 (364)
T ss_pred             CCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeeccc
Confidence            34568999999932    35666654  36999998742  211     1111235568999999998899999999999


Q ss_pred             CeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCcEEEEEc-ccc-CCCeE
Q 004969          521 GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD-ELFLASGYSKNIALYDINSGRRLQVFA-DMH-KEHIN  597 (721)
Q Consensus       521 GtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~-~~lls~g~Dg~IrlWDl~s~~~v~~l~-~~h-~~~V~  597 (721)
                      -+..|||++++..      ++....-..|..+|..++|...+ +.|+++|.||.||+||+|..+....+. ... ..+..
T Consensus       173 TTCTiWdie~~~~------~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLl  246 (364)
T KOG0290|consen  173 TTCTIWDIETGVS------GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLL  246 (364)
T ss_pred             CeEEEEEEeeccc------cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcce
Confidence            9999999999622      22334455688899999997644 578888999999999999765443333 212 56788


Q ss_pred             EEEEcCCCCcEEEEEECCC-cEEEEECCCCCceeEEEecCCCCeE-EEEEec-CCCEEEEEeCCCcEEEEEcCCCc----
Q 004969          598 VVKFSNHSPSIFATSSFDQ-DVKLWDLRQKPIQPCYTASSSKGNV-MVCFSP-DDHYLLGKGSGTSMFVQSLRGDP----  670 (721)
Q Consensus       598 sI~fsPdg~~lLaSgs~Dg-tIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSp-dg~~Lasgs~Dg~I~VWDl~g~~----  670 (721)
                      .++|++..++++||-..|+ .|.|-|+|.. +.++..+.+|.+.+ .++|.| ....|+++|.|..+.+||+..-+    
T Consensus       247 RLswnkqDpnymATf~~dS~~V~iLDiR~P-~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~  325 (364)
T KOG0290|consen  247 RLSWNKQDPNYMATFAMDSNKVVILDIRVP-CTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENG  325 (364)
T ss_pred             eeccCcCCchHHhhhhcCCceEEEEEecCC-CcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCC
Confidence            8999999999999876664 5999999984 67888999999998 899999 56789999999999999997221    


Q ss_pred             ---cc--ccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          671 ---FR--DFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       671 ---l~--~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                         +.  .-++.|..++|+|...      ..||.+.+-
T Consensus       326 ~dPilay~a~~EVNqi~Ws~~~~------Dwiai~~~k  357 (364)
T KOG0290|consen  326 EDPILAYTAGGEVNQIQWSSSQP------DWIAICFGK  357 (364)
T ss_pred             CCchhhhhccceeeeeeecccCC------CEEEEEecC
Confidence               11  1256899999997653      566666553

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.64  E-value=5.4e-15  Score=157.33  Aligned_cols=234  Identities=14%  Similarity=0.193  Sum_probs=170.5

Q ss_pred             CCccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 004969          451 NRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH  530 (721)
Q Consensus       451 ~~~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~  530 (721)
                      .+...|.++.|+|.+...+.+.+.||+|+.-|++++.....+........+.++.|+ .+...++.+..=|...+||.++
T Consensus       232 ~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~-~e~~~vl~~~~~G~f~~iD~R~  310 (498)
T KOG4328|consen  232 PHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFS-AESRSVLFGDNVGNFNVIDLRT  310 (498)
T ss_pred             cCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeecccc-CCCccEEEeecccceEEEEeec
Confidence            344469999999999999999999999999999876544444332334567788886 6666777777777999999998


Q ss_pred             CCCcccccccCcceeEeccCCCeEEEEEecCCCE-EEEEeCCCcEEEEECCCC--cE---EEEEccccCCCeEEEEEcCC
Q 004969          531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDEL-FLASGYSKNIALYDINSG--RR---LQVFADMHKEHINVVKFSNH  604 (721)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~-lls~g~Dg~IrlWDl~s~--~~---v~~l~~~h~~~V~sI~fsPd  604 (721)
                      +...+..+.        .|...|.+++++|..++ ++++|.|++.+|||++.-  +.   +..+.  |...|.++.|+|.
T Consensus       311 ~~s~~~~~~--------lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~--HrrsV~sAyFSPs  380 (498)
T KOG4328|consen  311 DGSEYENLR--------LHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLP--HRRSVNSAYFSPS  380 (498)
T ss_pred             CCccchhhh--------hhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceeccc--ccceeeeeEEcCC
Confidence            765332222        24457899999998766 555667999999999963  22   33443  9999999999999


Q ss_pred             CCcEEEEEECCCcEEEEECC----CCCceeEEEecC-CCCe---EEEEEecCCCEEEEEeCCCcEEEEEcCCCc-ccccc
Q 004969          605 SPSIFATSSFDQDVKLWDLR----QKPIQPCYTASS-SKGN---VMVCFSPDDHYLLGKGSGTSMFVQSLRGDP-FRDFN  675 (721)
Q Consensus       605 g~~lLaSgs~DgtIrIWDlr----s~~~~~~~~~~~-~~~~---vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~-l~~~~  675 (721)
                      +++ ++|.+.|..|||||..    ............ +..+   ....|.|+..++++|..-..|-|+|-.++. +..+.
T Consensus       381 ~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~  459 (498)
T KOG4328|consen  381 GGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELH  459 (498)
T ss_pred             CCc-eEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeecc
Confidence            965 9999999999999984    221111111111 1122   268999999999999999999999988655 33322


Q ss_pred             ----cCeEE-EEECCCCCcccccccEEEEecCC
Q 004969          676 ----MSILA-AYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       676 ----~~V~~-v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                          ..|.+ .+|||..       ..+++|+..
T Consensus       460 ~P~~~tI~~vn~~HP~~-------~~~~aG~~s  485 (498)
T KOG4328|consen  460 DPESSTIPSVNEFHPMR-------DTLAAGGNS  485 (498)
T ss_pred             Cccccccccceeecccc-------cceeccCCc
Confidence                23444 6899998       777777765

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.63  E-value=4.8e-17  Score=159.46  Aligned_cols=148  Identities=30%  Similarity=0.455  Sum_probs=74.1

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhcc
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM  179 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (721)
                      .|+|..+|+.  -++.-+++|...=-.-++|||+.|.|++|+.++.+++|++|+|+ +|+|+++.+.++.++|+|+.|+|
T Consensus        19 ~~~~~L~L~~--n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~-~N~I~~i~~~l~~~lp~L~~L~L   95 (175)
T PF14580_consen   19 VKLRELNLRG--NQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLS-NNRISSISEGLDKNLPNLQELYL   95 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE---SS---S-CHHHHHH-TT--EEE-
T ss_pred             cccccccccc--cccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccC-CCCCCccccchHHhCCcCCEEEC
Confidence            4789999999  67777899885333457899999999999999999999999999 99999998877789999999999


Q ss_pred             ccccchhhhHHHHHhhcCCcchhhccceeeecCCCCCCCCCCCCCCcccccccccCCCCCCCcceeecCCCcccccCCCC
Q 004969          180 CETRVGNLWTTIAALSKLPSLAELRFQNWLCCDDTGNSSGSSDQDDKTDFSQLNICSSFGAYGNVVINPDSQILVEDSSD  259 (721)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (721)
                      .+|+|+++ ..+..|++||+|+.|                                                        
T Consensus        96 ~~N~I~~l-~~l~~L~~l~~L~~L--------------------------------------------------------  118 (175)
T PF14580_consen   96 SNNKISDL-NELEPLSSLPKLRVL--------------------------------------------------------  118 (175)
T ss_dssp             TTS---SC-CCCGGGGG-TT--EE--------------------------------------------------------
T ss_pred             cCCcCCCh-HHhHHHHcCCCccee--------------------------------------------------------
Confidence            99999985 888888888888544                                                        


Q ss_pred             CccchhcccccchhhhhhhccCCcCCCcccccccccccccccCcccCCchHHHHhhhcccccccccccCCCCccchHHHH
Q 004969          260 DSEVDFSIQHREYDYLELLSNLVPQLDGEIDLWNEVSFDAFSNQNEEESSAGVLARCTADVSLKYISCHASPICFEKHYR  339 (721)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pi~~~~~yR  339 (721)
                                                                                        ..+++|++..++||
T Consensus       119 ------------------------------------------------------------------~L~~NPv~~~~~YR  132 (175)
T PF14580_consen  119 ------------------------------------------------------------------SLEGNPVCEKKNYR  132 (175)
T ss_dssp             ------------------------------------------------------------------E-TT-GGGGSTTHH
T ss_pred             ------------------------------------------------------------------eccCCcccchhhHH
Confidence                                                                              47889999999999


Q ss_pred             HHHHHhCccccccCCCCcChHHHHhhhccccccc
Q 004969          340 DYMIASLPKLKFLDNLPIRKVDRERATITYSQYF  373 (721)
Q Consensus       340 e~~I~~Lp~Lk~Ldn~~I~k~ere~a~~~~~~~l  373 (721)
                      .|++.++|+|+.||+..+++.+|+.|...|....
T Consensus       133 ~~vi~~lP~Lk~LD~~~V~~~ER~~A~~~f~~~~  166 (175)
T PF14580_consen  133 LFVIYKLPSLKVLDGQDVTEEERQEAEKLFKGKR  166 (175)
T ss_dssp             HHHHHH-TT-SEETTEETTS-B------------
T ss_pred             HHHHHHcChhheeCCEEccHHHhccccccccccc
Confidence            9999999999999999999999999988876543

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.63  E-value=1e-14  Score=165.40  Aligned_cols=212  Identities=17%  Similarity=0.251  Sum_probs=167.5

Q ss_pred             cCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeE--EEE--eecCCCCCCeEEEEEeeCCC--CEEEEEeCCCeEEEEE
Q 004969          454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENI--VSY--IPSFGAMNSVLGLCWLKKYP--SKLIAGSDNGSLKLYD  527 (721)
Q Consensus       454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~--i~~--l~~~~H~~~V~sl~fsp~d~--~~LaSgs~DGtVrIWD  527 (721)
                      ..|+|+.|+|.++.++|.|..+|.|.+||+..+..  ...  .....|..+|+.+.|. .+.  .-+++++.||.|..|+
T Consensus       243 s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~-~~~~~~~f~s~ssDG~i~~W~  321 (555)
T KOG1587|consen  243 SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL-QNEHNTEFFSLSSDGSICSWD  321 (555)
T ss_pred             CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe-ccCCCCceEEEecCCcEeeee
Confidence            35999999999999999999999999999987654  222  2234789999999997 333  4589999999999998


Q ss_pred             cCCCCCccccc---------------------------------------------cc--Ccc------e-eEeccCCCe
Q 004969          528 IRHMPPSIRGM---------------------------------------------HY--GAG------T-VTFDEFDQL  553 (721)
Q Consensus       528 i~~~~~~~~~~---------------------------------------------~~--~~~------~-~~~~~~~~V  553 (721)
                      ++.-.......                                             .+  ...      . ....|.++|
T Consensus       322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v  401 (555)
T KOG1587|consen  322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV  401 (555)
T ss_pred             ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence            87422100000                                             00  000      0 112356789


Q ss_pred             EEEEEecCCCEEEEEeCCCcEEEEECC-CCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEE
Q 004969          554 TSVHVNSMDELFLASGYSKNIALYDIN-SGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCY  632 (721)
Q Consensus       554 ~sv~~sp~~~~lls~g~Dg~IrlWDl~-s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~  632 (721)
                      +++.++|-+..++.++.|.+++||... ...++..+.. +...|++++|+|..+..|+++..||.+.+||+......|+.
T Consensus       402 ~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~-~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~  480 (555)
T KOG1587|consen  402 YAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDS-SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVL  480 (555)
T ss_pred             EeeecCCCccceeeeeccceeEeccccCCCCcchhhhh-ccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcc
Confidence            999999999888888779999999988 7778877775 77889999999999999999999999999999987777777


Q ss_pred             EecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          633 TASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       633 ~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                      +........ .+.|+++|+.|++|...|.+++|++.
T Consensus       481 s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  481 SQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS  516 (555)
T ss_pred             cccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence            665554444 78899999999999999999999996

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.62  E-value=2.7e-14  Score=163.83  Aligned_cols=243  Identities=17%  Similarity=0.208  Sum_probs=168.0

Q ss_pred             cCCCCCCCCCccCeEEEEEeC-CCCCEEEEEECCCeEEEEECC-C----CeEEEEeec-----CCCCCCeEEEEEeeCCC
Q 004969          443 SGNHMGDENRSFRPRQFEYHP-SISCLMVFGTLDGEIVVVNHE-N----ENIVSYIPS-----FGAMNSVLGLCWLKKYP  511 (721)
Q Consensus       443 ~gh~~~~~~~~~~V~~lafsP-~dg~~LasGs~DG~I~IWdl~-t----g~~i~~l~~-----~~H~~~V~sl~fsp~d~  511 (721)
                      .+...+.... -+|+.+.+-. +|..++++|+.||.|+||+-. +    .+.+..+..     .+..+.-.-+.|. +..
T Consensus      1100 ~~F~n~~~~~-t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWq-Q~~ 1177 (1387)
T KOG1517|consen 1100 NGFDNGAFPD-TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQ-QQS 1177 (1387)
T ss_pred             ccccCCCCCC-CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehh-hhC
Confidence            3444444322 2688888765 477899999999999999743 2    233332221     1112222457887 555


Q ss_pred             CEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCc---EEEE
Q 004969          512 SKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSM-DELFLASGYSKNIALYDINSGR---RLQV  587 (721)
Q Consensus       512 ~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~-~~~lls~g~Dg~IrlWDl~s~~---~v~~  587 (721)
                      .+|+++|.-..|+|||...........        +.....|+++.-+.. |+.+++|-.||.|++||.+...   .+..
T Consensus      1178 G~Ll~tGd~r~IRIWDa~~E~~~~diP--------~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~ 1249 (1387)
T KOG1517|consen 1178 GHLLVTGDVRSIRIWDAHKEQVVADIP--------YGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCV 1249 (1387)
T ss_pred             CeEEecCCeeEEEEEecccceeEeecc--------cCCCccceeecccccCCceEEEeecCCceEEeecccCCcccccee
Confidence            667777778899999999865421111        112233566654433 5777777799999999999643   4556


Q ss_pred             EccccCCC--eEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCC--C--eEEEEEecCCCEEEEEeCCCcE
Q 004969          588 FADMHKEH--INVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSK--G--NVMVCFSPDDHYLLGKGSGTSM  661 (721)
Q Consensus       588 l~~~h~~~--V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~--~--~vsl~fSpdg~~Lasgs~Dg~I  661 (721)
                      .+. |...  |..+.+.+.|-..+++|+.||.|++||+|............+.  +  .+++..+++...+|+|+. +.|
T Consensus      1250 ~R~-h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~i 1327 (1387)
T KOG1517|consen 1250 YRE-HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLI 1327 (1387)
T ss_pred             ecc-cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceE
Confidence            665 8877  9999999988556999999999999999985333233332222  3  448999999999999998 999


Q ss_pred             EEEEcCCCccccc----------ccCeEEEEECCCCCcccccccEEEEecCCC
Q 004969          662 FVQSLRGDPFRDF----------NMSILAAYTRPSSKSEIVKVNLLASTDHCD  704 (721)
Q Consensus       662 ~VWDl~g~~l~~~----------~~~V~~v~fsP~~~~~~v~v~lLASgs~~~  704 (721)
                      +||++.|..+..+          .+++.+++|||..       .+||.|+...
T Consensus      1328 kIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~-------~llAaG~~Ds 1373 (1387)
T KOG1517|consen 1328 KIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHR-------LLLAAGSADS 1373 (1387)
T ss_pred             EEEecChhhhcccccCcccccCcCCCcceeeecchh-------HhhhhccCCc
Confidence            9999997654332          3578999999998       8888886653

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=9.8e-14  Score=153.77  Aligned_cols=200  Identities=15%  Similarity=0.188  Sum_probs=160.9

Q ss_pred             cCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969          454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~  533 (721)
                      .+|-+++|++  +.+|++.+.+|.|.-||+.+++....+.  ...++|++++.+ +.++.++.|++||.+..++...+..
T Consensus        70 rsIE~L~W~e--~~RLFS~g~sg~i~EwDl~~lk~~~~~d--~~gg~IWsiai~-p~~~~l~IgcddGvl~~~s~~p~~I  144 (691)
T KOG2048|consen   70 RSIESLAWAE--GGRLFSSGLSGSITEWDLHTLKQKYNID--SNGGAIWSIAIN-PENTILAIGCDDGVLYDFSIGPDKI  144 (691)
T ss_pred             CceeeEEEcc--CCeEEeecCCceEEEEecccCceeEEec--CCCcceeEEEeC-CccceEEeecCCceEEEEecCCceE
Confidence            3699999996  5778899999999999999999988887  556899999998 6778999999999777777766543


Q ss_pred             cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEc----c---ccCCCeEEEEEcCCCC
Q 004969          534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFA----D---MHKEHINVVKFSNHSP  606 (721)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~----~---~h~~~V~sI~fsPdg~  606 (721)
                      ...       ..-....+.|.+++|++++..+++|+.||.|++||..++..++...    +   ....-|+++.|-.++ 
T Consensus       145 ~~~-------r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-  216 (691)
T KOG2048|consen  145 TYK-------RSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-  216 (691)
T ss_pred             EEE-------eecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-
Confidence            221       1111234679999999999999999999999999999998776221    1   123357888888776 


Q ss_pred             cEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004969          607 SIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGD  669 (721)
Q Consensus       607 ~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~  669 (721)
                       .+++|..-|+|.+||...+..  +..+..|.+.+ +++..+++.+++++|.|+.|.-|...+.
T Consensus       217 -tI~sgDS~G~V~FWd~~~gTL--iqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~  277 (691)
T KOG2048|consen  217 -TIASGDSAGTVTFWDSIFGTL--IQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTN  277 (691)
T ss_pred             -cEEEecCCceEEEEcccCcch--hhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCC
Confidence             899999999999999999855  44555666666 9999999999999999999988887643

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.62  E-value=4.3e-15  Score=152.54  Aligned_cols=221  Identities=13%  Similarity=0.144  Sum_probs=163.3

Q ss_pred             eEEEEEeCC---CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969          456 PRQFEYHPS---ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP  532 (721)
Q Consensus       456 V~~lafsP~---dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~  532 (721)
                      -..++|+-.   ...++|+|+.-|.|+|.|+.++++...+.  +|.++|..+.++|..++++++||.|.+||+|++++..
T Consensus        92 fytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~--ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~  169 (385)
T KOG1034|consen   92 FYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYR--GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDV  169 (385)
T ss_pred             eEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcccee--ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCe
Confidence            345666542   34689999999999999999999999888  8999999999999899999999999999999999976


Q ss_pred             CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcE------E-------------------EE
Q 004969          533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRR------L-------------------QV  587 (721)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~------v-------------------~~  587 (721)
                      +. ....+     ...|.+.|.+++|+.++..++++|.|.++++|++...+.      .                   ..
T Consensus       170 Cv-~VfGG-----~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~  243 (385)
T KOG1034|consen  170 CV-AVFGG-----VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPD  243 (385)
T ss_pred             EE-EEecc-----cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccc
Confidence            52 11111     113567899999999999999999999999999983210      0                   01


Q ss_pred             E--ccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCC-CCc-----------eeEEEecCCC--Ce-EEEEEecCCC
Q 004969          588 F--ADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQ-KPI-----------QPCYTASSSK--GN-VMVCFSPDDH  650 (721)
Q Consensus       588 l--~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs-~~~-----------~~~~~~~~~~--~~-vsl~fSpdg~  650 (721)
                      |  ...|...|.|+.|-  | .++++-|-++.|..|..-. ++.           .....+.-..  .+ +..+|.|-++
T Consensus       244 fst~diHrnyVDCvrw~--g-d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~  320 (385)
T KOG1034|consen  244 FSTTDIHRNYVDCVRWF--G-DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK  320 (385)
T ss_pred             ccccccccchHHHHHHH--h-hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH
Confidence            1  12367777777775  4 6899999999999998721 110           0111222111  12 2678889999


Q ss_pred             EEEEEeCCCcEEEEEcCCCcc---cc--c---ccCeEEEEECCCC
Q 004969          651 YLLGKGSGTSMFVQSLRGDPF---RD--F---NMSILAAYTRPSS  687 (721)
Q Consensus       651 ~Lasgs~Dg~I~VWDl~g~~l---~~--~---~~~V~~v~fsP~~  687 (721)
                      +||.|...|.+++||++...-   ..  |   ...|...+|+-++
T Consensus       321 ~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dg  365 (385)
T KOG1034|consen  321 MLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDG  365 (385)
T ss_pred             HHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccC
Confidence            999999999999999983221   11  1   3468889999998

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.60  E-value=5e-14  Score=147.64  Aligned_cols=165  Identities=15%  Similarity=0.299  Sum_probs=133.2

Q ss_pred             CCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCccee-EeccCCCeEEEEEecCC-CEEEEEeCCC
Q 004969          495 FGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTV-TFDEFDQLTSVHVNSMD-ELFLASGYSK  572 (721)
Q Consensus       495 ~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~-~~~~~~~V~sv~~sp~~-~~lls~g~Dg  572 (721)
                      .||+++|..++|+|.+...+||||.|.+|.||.+..+... ..+.  ...+ -..|...|.-+.|||.. +.++++|.|.
T Consensus        78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~-~~lt--epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn  154 (472)
T KOG0303|consen   78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLT-RDLT--EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN  154 (472)
T ss_pred             cCccccccccccCccCCceeecCCCCceEEEEECCCcccc-cCcc--cceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence            3999999999999999999999999999999999875432 1111  1222 33456678999999986 5667788999


Q ss_pred             cEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE--EEEEecCCC
Q 004969          573 NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV--MVCFSPDDH  650 (721)
Q Consensus       573 ~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v--sl~fSpdg~  650 (721)
                      +|.+|++.+|+.+.++.  |...|+++.|+.+| .+++|.+.|..|||||.|+++.  +....+|.+.-  .+.|-.+|.
T Consensus       155 ~v~iWnv~tgeali~l~--hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~--v~e~~~heG~k~~Raifl~~g~  229 (472)
T KOG0303|consen  155 TVSIWNVGTGEALITLD--HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTV--VSEGVAHEGAKPARAIFLASGK  229 (472)
T ss_pred             eEEEEeccCCceeeecC--CCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCcE--eeecccccCCCcceeEEeccCc
Confidence            99999999999998887  99999999999999 8999999999999999999965  44445555543  688989999


Q ss_pred             EEEEEe---CCCcEEEEEcC
Q 004969          651 YLLGKG---SGTSMFVQSLR  667 (721)
Q Consensus       651 ~Lasgs---~Dg~I~VWDl~  667 (721)
                      .+.||-   .+..+-+||-.
T Consensus       230 i~tTGfsr~seRq~aLwdp~  249 (472)
T KOG0303|consen  230 IFTTGFSRMSERQIALWDPN  249 (472)
T ss_pred             eeeeccccccccceeccCcc
Confidence            555552   35678899865

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=1.4e-13  Score=147.03  Aligned_cols=216  Identities=18%  Similarity=0.182  Sum_probs=165.8

Q ss_pred             EEEEEEC-CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeE
Q 004969          468 LMVFGTL-DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVT  546 (721)
Q Consensus       468 ~LasGs~-DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~  546 (721)
                      +++++.. -..|.+|.+..........  --.++|.+++-+ +.|.+|+.|+..|.+++|.+.+|....         +.
T Consensus        52 yllsaq~~rp~l~vw~i~k~~~~~q~~--v~Pg~v~al~s~-n~G~~l~ag~i~g~lYlWelssG~LL~---------v~  119 (476)
T KOG0646|consen   52 YLLSAQLKRPLLHVWEILKKDQVVQYI--VLPGPVHALASS-NLGYFLLAGTISGNLYLWELSSGILLN---------VL  119 (476)
T ss_pred             heeeecccCccccccccCchhhhhhhc--ccccceeeeecC-CCceEEEeecccCcEEEEEeccccHHH---------HH
Confidence            4444433 3467778776543333111  224679999976 788999988899999999999987631         12


Q ss_pred             eccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC---------CCcEEEEEccccCCCeEEEEEcCCC-CcEEEEEECCC
Q 004969          547 FDEFDQLTSVHVNSMDELFLASGYSKNIALYDIN---------SGRRLQVFADMHKEHINVVKFSNHS-PSIFATSSFDQ  616 (721)
Q Consensus       547 ~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~---------s~~~v~~l~~~h~~~V~sI~fsPdg-~~lLaSgs~Dg  616 (721)
                      ..|...|+++.|+-+|.+|++||.||.|.+|++.         +-++.+.|.. |.-+|+.+...+.| ...++|+|.|.
T Consensus       120 ~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~-HtlsITDl~ig~Gg~~~rl~TaS~D~  198 (476)
T KOG0646|consen  120 SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSD-HTLSITDLQIGSGGTNARLYTASEDR  198 (476)
T ss_pred             HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeecc-CcceeEEEEecCCCccceEEEecCCc
Confidence            3455679999999999999999999999999874         2467788887 99999999988764 25899999999


Q ss_pred             cEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCc--------------------cccccc
Q 004969          617 DVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDP--------------------FRDFNM  676 (721)
Q Consensus       617 tIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~--------------------l~~~~~  676 (721)
                      ++|+||+..+....  ++.......+++.+|.++.+++|+.+|.|.+.++.+-+                    +.+|..
T Consensus       199 t~k~wdlS~g~LLl--ti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~  276 (476)
T KOG0646|consen  199 TIKLWDLSLGVLLL--TITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHEN  276 (476)
T ss_pred             eEEEEEeccceeeE--EEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccC
Confidence            99999999986543  33333445589999999999999999999987764211                    344544


Q ss_pred             --CeEEEEECCCCCcccccccEEEEecCCCc
Q 004969          677 --SILAAYTRPSSKSEIVKVNLLASTDHCDK  705 (721)
Q Consensus       677 --~V~~v~fsP~~~~~~v~v~lLASgs~~~k  705 (721)
                        .|.+++.+-++       .+|++|+...+
T Consensus       277 ~~~ITcLais~Dg-------tlLlSGd~dg~  300 (476)
T KOG0646|consen  277 ESAITCLAISTDG-------TLLLSGDEDGK  300 (476)
T ss_pred             CcceeEEEEecCc-------cEEEeeCCCCC
Confidence              89999999999       99999998854

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.59  E-value=3.8e-14  Score=155.85  Aligned_cols=230  Identities=16%  Similarity=0.275  Sum_probs=157.6

Q ss_pred             EEEEeC--CCCCEEEEEECCCeEEEEECCCCeEE----EEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 004969          458 QFEYHP--SISCLMVFGTLDGEIVVVNHENENIV----SYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM  531 (721)
Q Consensus       458 ~lafsP--~dg~~LasGs~DG~I~IWdl~tg~~i----~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~  531 (721)
                      +..|++  ....+|+.+..||.|.++|.......    +......|.++|..+.|-| ....|++++.|.++++||+.+.
T Consensus        54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s  132 (720)
T KOG0321|consen   54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTS  132 (720)
T ss_pred             cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeeccc
Confidence            345554  35578999999999999998643222    1122248999999999985 7789999999999999999986


Q ss_pred             CCcccccccCcceeEeccCCCeEEEEEecCCCE-EEEEeCCCcEEEEECCCCc--------------------EEEEEc-
Q 004969          532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDEL-FLASGYSKNIALYDINSGR--------------------RLQVFA-  589 (721)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~-lls~g~Dg~IrlWDl~s~~--------------------~v~~l~-  589 (721)
                      ...       .....+.|...|.+++|.+.+.. |++||.||.|.|||++-..                    +...+. 
T Consensus       133 ~l~-------G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~k  205 (720)
T KOG0321|consen  133 RLV-------GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKK  205 (720)
T ss_pred             eee-------cceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhc
Confidence            652       12256678888999999998765 5566789999999998432                    000000 


Q ss_pred             -----cccCCCeEE---EEEcCCCCcEEEEEEC-CCcEEEEECCCCCce------eEEEecCC----CCeEEEEEecCCC
Q 004969          590 -----DMHKEHINV---VKFSNHSPSIFATSSF-DQDVKLWDLRQKPIQ------PCYTASSS----KGNVMVCFSPDDH  650 (721)
Q Consensus       590 -----~~h~~~V~s---I~fsPdg~~lLaSgs~-DgtIrIWDlrs~~~~------~~~~~~~~----~~~vsl~fSpdg~  650 (721)
                           .++...|.+   +.+..|. ..||+++. |+.|+|||+|.....      ....+..+    .+.+++.....|.
T Consensus       206 r~~k~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt  284 (720)
T KOG0321|consen  206 RIRKWKAASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT  284 (720)
T ss_pred             cccccccccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC
Confidence                 023333443   3344455 68888877 999999999975321      11222222    3445788888999


Q ss_pred             EEEEEeCCCcEEEEEcCCCc---ccccccC-----eEEEEECCCCCcccccccEEEEecCC
Q 004969          651 YLLGKGSGTSMFVQSLRGDP---FRDFNMS-----ILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       651 ~Lasgs~Dg~I~VWDl~g~~---l~~~~~~-----V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      +|++.+.|+.|+.|++.+..   ...|.+.     -..-..+|++       ..++||+..
T Consensus       285 ~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~-------~~l~SgSsd  338 (720)
T KOG0321|consen  285 YLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDD-------CSLLSGSSD  338 (720)
T ss_pred             eEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCC-------ceEeccCCC
Confidence            99999999999999998432   2222221     1122457888       888888887

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.58  E-value=1.8e-13  Score=139.66  Aligned_cols=210  Identities=14%  Similarity=0.204  Sum_probs=149.8

Q ss_pred             CeEEEEEe-CCCCCEEEEEECCCeEEEEECCC------C-eEEEEeecCCCCCCeEEEEEeeCC-CCEEEEEeCCCeEEE
Q 004969          455 RPRQFEYH-PSISCLMVFGTLDGEIVVVNHEN------E-NIVSYIPSFGAMNSVLGLCWLKKY-PSKLIAGSDNGSLKL  525 (721)
Q Consensus       455 ~V~~lafs-P~dg~~LasGs~DG~I~IWdl~t------g-~~i~~l~~~~H~~~V~sl~fsp~d-~~~LaSgs~DGtVrI  525 (721)
                      .|..|.|- |.-|+.+|+++.|+++.||.-..      | +-+..-........|++|+|.|.. |-.+++++.||++||
T Consensus        61 Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRI  140 (361)
T KOG2445|consen   61 SIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRI  140 (361)
T ss_pred             cEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEE
Confidence            57888885 56789999999999999998521      1 222222223567899999998754 568999999999999


Q ss_pred             EEcCCCCCccccccc-Ccc----eeEeccCCCeEEEEEecC---CCEEEEEeCC-----CcEEEEECCCC----cEEEEE
Q 004969          526 YDIRHMPPSIRGMHY-GAG----TVTFDEFDQLTSVHVNSM---DELFLASGYS-----KNIALYDINSG----RRLQVF  588 (721)
Q Consensus       526 WDi~~~~~~~~~~~~-~~~----~~~~~~~~~V~sv~~sp~---~~~lls~g~D-----g~IrlWDl~s~----~~v~~l  588 (721)
                      |+.-..-.. ....- +.-    ...-.+..+..|+.|+|.   .+.|++|+.+     +.+.||....+    ..+.++
T Consensus       141 YEA~dp~nL-s~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L  219 (361)
T KOG2445|consen  141 YEAPDPMNL-SQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAEL  219 (361)
T ss_pred             EecCCcccc-ccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhc
Confidence            998653221 00000 000    001123456789999875   3566666654     47899977643    245566


Q ss_pred             ccccCCCeEEEEEcCCCC---cEEEEEECCCcEEEEECCCC------------------CceeEEEecCCCCeE-EEEEe
Q 004969          589 ADMHKEHINVVKFSNHSP---SIFATSSFDQDVKLWDLRQK------------------PIQPCYTASSSKGNV-MVCFS  646 (721)
Q Consensus       589 ~~~h~~~V~sI~fsPdg~---~lLaSgs~DgtIrIWDlrs~------------------~~~~~~~~~~~~~~v-sl~fS  646 (721)
                      .+ |+.+|+.|+|.|.-+   .++|+++.|| |+||.++..                  +...+..+.+|.+.+ .+.|+
T Consensus       220 ~d-~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wN  297 (361)
T KOG2445|consen  220 PD-HTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWN  297 (361)
T ss_pred             CC-CCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEe
Confidence            66 999999999999753   5899999999 999998731                  112234567888777 99999


Q ss_pred             cCCCEEEEEeCCCcEEEEEcC
Q 004969          647 PDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       647 pdg~~Lasgs~Dg~I~VWDl~  667 (721)
                      -.|..|++.|.||.+++|...
T Consensus       298 mtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  298 MTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             eeeeEEeecCCCceeeehhhh
Confidence            999999999999999999765

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.58  E-value=1.2e-14  Score=158.86  Aligned_cols=202  Identities=14%  Similarity=0.261  Sum_probs=153.7

Q ss_pred             EEeCCCCCEEEE--EECCCeEEEEECCCCeEE--EEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 004969          460 EYHPSISCLMVF--GTLDGEIVVVNHENENIV--SYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI  535 (721)
Q Consensus       460 afsP~dg~~Las--Gs~DG~I~IWdl~tg~~i--~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~  535 (721)
                      -|+. +..++|+  .+..|.|-||++.....+  ..+...-....|+.+.|.|.+...|+.+++||.|++|.+..+...-
T Consensus       586 Gfca-n~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e  664 (1012)
T KOG1445|consen  586 GFCA-NNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE  664 (1012)
T ss_pred             ceee-ccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc
Confidence            3455 4556655  455799999998743221  1112112346799999999999999999999999999998754321


Q ss_pred             cccccCcceeEeccCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969          536 RGMHYGAGTVTFDEFDQLTSVHVNSMD-ELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF  614 (721)
Q Consensus       536 ~~~~~~~~~~~~~~~~~V~sv~~sp~~-~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~  614 (721)
                      .  ......+.-.|...|+++.|||-. +.++++++|-+|++||+++++....+.+ |.+.|..++|+|+| +.+|+.+.
T Consensus       665 ~--~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~g-HtdqIf~~AWSpdG-r~~AtVcK  740 (1012)
T KOG1445|consen  665 N--EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVG-HTDQIFGIAWSPDG-RRIATVCK  740 (1012)
T ss_pred             c--cCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheecc-CcCceeEEEECCCC-cceeeeec
Confidence            1  112223334567889999999964 5677788999999999999999889997 99999999999999 89999999


Q ss_pred             CCcEEEEECCCCCceeEEEecCCCCeE--EEEEecCCCEEEEEeCCC----cEEEEEcC
Q 004969          615 DQDVKLWDLRQKPIQPCYTASSSKGNV--MVCFSPDDHYLLGKGSGT----SMFVQSLR  667 (721)
Q Consensus       615 DgtIrIWDlrs~~~~~~~~~~~~~~~v--sl~fSpdg~~Lasgs~Dg----~I~VWDl~  667 (721)
                      ||+|++|..++++ .+++...+..+.-  .+.|.-||+++++.+.|.    .|.+||..
T Consensus       741 Dg~~rVy~Prs~e-~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq  798 (1012)
T KOG1445|consen  741 DGTLRVYEPRSRE-QPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQ  798 (1012)
T ss_pred             CceEEEeCCCCCC-CccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhh
Confidence            9999999999874 5566655443332  689999999999887665    57788865

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.58  E-value=6.3e-14  Score=141.97  Aligned_cols=195  Identities=17%  Similarity=0.281  Sum_probs=151.0

Q ss_pred             CCccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeE--EEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEc
Q 004969          451 NRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENI--VSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDI  528 (721)
Q Consensus       451 ~~~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~--i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi  528 (721)
                      .++..++++.|+..+.++|.+.+-|-+..|||+++|..  +++ +..+|...|..++|.....+.+++.|.||.||++|+
T Consensus       148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkT-QLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDL  226 (364)
T KOG0290|consen  148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKT-QLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDL  226 (364)
T ss_pred             ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceee-EEEecCcceeEEEeccCccceEEEecCCCcEEEEEe
Confidence            34557999999999999999999999999999998733  222 233899999999998655689999999999999999


Q ss_pred             CCCCCcccccccCcceeEecc---CCCeEEEEEecCCCEEEE-EeC-CCcEEEEECCC-CcEEEEEccccCCCeEEEEEc
Q 004969          529 RHMPPSIRGMHYGAGTVTFDE---FDQLTSVHVNSMDELFLA-SGY-SKNIALYDINS-GRRLQVFADMHKEHINVVKFS  602 (721)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~---~~~V~sv~~sp~~~~lls-~g~-Dg~IrlWDl~s-~~~v~~l~~~h~~~V~sI~fs  602 (721)
                      +.-..        . .+.+..   ..+...++|++.+..+++ -.. ...|.|.|+|. ..++..+++ |.+.|++|+|.
T Consensus       227 R~leH--------S-TIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~-H~a~VNgIaWa  296 (364)
T KOG0290|consen  227 RSLEH--------S-TIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRN-HQASVNGIAWA  296 (364)
T ss_pred             ccccc--------c-eEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhc-CcccccceEec
Confidence            98443        2 222222   346888999988765544 444 46799999996 567888887 99999999999


Q ss_pred             CCCCcEEEEEECCCcEEEEECCCCCc----eeEEEecCCCCeEEEEEec-CCCEEEEEe
Q 004969          603 NHSPSIFATSSFDQDVKLWDLRQKPI----QPCYTASSSKGNVMVCFSP-DDHYLLGKG  656 (721)
Q Consensus       603 Pdg~~lLaSgs~DgtIrIWDlrs~~~----~~~~~~~~~~~~vsl~fSp-dg~~Lasgs  656 (721)
                      |.....++|++.|..+-+||+.+...    .++........+..+.|++ .+.+++.+.
T Consensus       297 PhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~  355 (364)
T KOG0290|consen  297 PHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICF  355 (364)
T ss_pred             CCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEe
Confidence            99989999999999999999987432    2233333333334799996 677887765

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.56  E-value=4.9e-14  Score=153.50  Aligned_cols=208  Identities=14%  Similarity=0.210  Sum_probs=158.8

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCC------CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcC
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHEN------ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIR  529 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~t------g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~  529 (721)
                      ++.++|+| ....+++++.||++++|+++.      +.....+...+|.++|.|++.. .++..+++||.||+|+.|++.
T Consensus       297 ir~l~~~~-sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~-~n~~~~ysgg~Dg~I~~w~~p  374 (577)
T KOG0642|consen  297 IRALAFHP-SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVP-SNGEHCYSGGIDGTIRCWNLP  374 (577)
T ss_pred             hhhhhcCC-CCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEec-CCceEEEeeccCceeeeeccC
Confidence            78899999 778899999999999999932      2233334445999999999985 899999999999999999876


Q ss_pred             CCCCccccccc-CcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEc-------------------
Q 004969          530 HMPPSIRGMHY-GAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFA-------------------  589 (721)
Q Consensus       530 ~~~~~~~~~~~-~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~-------------------  589 (721)
                      ...-....... .-......|.+.|+.+++|+..+.+++++.||++++|+.....+ .+|.                   
T Consensus       375 ~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a  453 (577)
T KOG0642|consen  375 PNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPA  453 (577)
T ss_pred             CCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhH
Confidence            32211111100 00112345778899999999999999999999999999875443 1000                   


Q ss_pred             --------------------------c------ccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCC
Q 004969          590 --------------------------D------MHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSS  637 (721)
Q Consensus       590 --------------------------~------~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~  637 (721)
                                                .      .....+..+.++|.+ .+.+++..|+.|+++|..++..  ++....|
T Consensus       454 ~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~-~~~~~~hed~~Ir~~dn~~~~~--l~s~~a~  530 (577)
T KOG0642|consen  454 HSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTA-DITFTAHEDRSIRFFDNKTGKI--LHSMVAH  530 (577)
T ss_pred             hhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCC-CeeEecccCCceeccccccccc--chheeec
Confidence                                      0      001346678888888 6899999999999999999854  6666666


Q ss_pred             CCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004969          638 KGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGD  669 (721)
Q Consensus       638 ~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~  669 (721)
                      ...+ ++++.|+|.+|++|+.|+.+++|.+..+
T Consensus       531 ~~svtslai~~ng~~l~s~s~d~sv~l~kld~k  563 (577)
T KOG0642|consen  531 KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK  563 (577)
T ss_pred             cceecceeecCCCceEEeecCCceeehhhccch
Confidence            6666 8999999999999999999999998743

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.56  E-value=5.7e-14  Score=147.85  Aligned_cols=168  Identities=13%  Similarity=0.168  Sum_probs=131.7

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe------EEEE-eecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEE
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN------IVSY-IPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYD  527 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~------~i~~-l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWD  527 (721)
                      .|.++.|.+.+.+.+++|+.|..|++|-+..+.      .+.. -....|..+|+++.|+ ++++.|+||+++|.|.+|.
T Consensus        15 pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~-p~gelLASg~D~g~v~lWk   93 (434)
T KOG1009|consen   15 PVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFS-PDGELLASGGDGGEVFLWK   93 (434)
T ss_pred             ceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEc-CCcCeeeecCCCceEEEEE
Confidence            488999999666699999999999999876422      1211 1124799999999998 7999999999999999998


Q ss_pred             cCCCCCc----cccccc---CcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEE
Q 004969          528 IRHMPPS----IRGMHY---GAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVK  600 (721)
Q Consensus       528 i~~~~~~----~~~~~~---~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~  600 (721)
                      .......    -.....   ....+...|...|..++|+|++..+++++.|..+++||+..|.....+.+ |...|..++
T Consensus        94 ~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~d-h~~yvqgva  172 (434)
T KOG1009|consen   94 QGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDD-HEHYVQGVA  172 (434)
T ss_pred             ecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccc-cccccceee
Confidence            7731110    000000   01111223667899999999999999999999999999999999999987 999999999


Q ss_pred             EcCCCCcEEEEEECCCcEEEEECCC
Q 004969          601 FSNHSPSIFATSSFDQDVKLWDLRQ  625 (721)
Q Consensus       601 fsPdg~~lLaSgs~DgtIrIWDlrs  625 (721)
                      |.|.+ .++++-+.|...+.+.+..
T Consensus       173 wDpl~-qyv~s~s~dr~~~~~~~~~  196 (434)
T KOG1009|consen  173 WDPLN-QYVASKSSDRHPEGFSAKL  196 (434)
T ss_pred             cchhh-hhhhhhccCcccceeeeee
Confidence            99998 7999999998777777654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=99.56  E-value=4.4e-16  Score=151.53  Aligned_cols=157  Identities=27%  Similarity=0.456  Sum_probs=135.8

Q ss_pred             chHHHHHHHHHhcc-cceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccc
Q 004969           87 TGEFALSLMHAIDQ-KLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKE  165 (721)
Q Consensus        87 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  165 (721)
                      +-|...+..+-+|. +=|.+|||+  +-+.-+.+|++.-..-+++||++|.+|||..++.+.|||||.|. +|+||.|..
T Consensus         5 t~el~~q~pqy~~~~~e~e~~LR~--lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~-nNrIt~I~p   81 (233)
T KOG1644|consen    5 TAELIVQAPQYINSVRERELDLRG--LKIPVIENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLN-NNRITRIDP   81 (233)
T ss_pred             cHHHHhhchhhhhhcccccccccc--ccccchhhccccccccceecccccchhhcccCCCccccceEEec-CCcceeecc
Confidence            33444444444442 478999999  88888899999999999999999999999999999999999999 999999999


Q ss_pred             cccccccccchhccccccchhhhHHHHHhhcCCcchhhccceeeecCCCCCCCCCCCCCCcccccccccCCCCCCCccee
Q 004969          166 DCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQNWLCCDDTGNSSGSSDQDDKTDFSQLNICSSFGAYGNVV  245 (721)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (721)
                      +--.-.|||..|.+.+|+|.+|    +-|-+|-++..|                                          
T Consensus        82 ~L~~~~p~l~~L~LtnNsi~~l----~dl~pLa~~p~L------------------------------------------  115 (233)
T KOG1644|consen   82 DLDTFLPNLKTLILTNNSIQEL----GDLDPLASCPKL------------------------------------------  115 (233)
T ss_pred             chhhhccccceEEecCcchhhh----hhcchhccCCcc------------------------------------------
Confidence            9999999999999999999988    444444443222                                          


Q ss_pred             ecCCCcccccCCCCCccchhcccccchhhhhhhccCCcCCCcccccccccccccccCcccCCchHHHHhhhccccccccc
Q 004969          246 INPDSQILVEDSSDDSEVDFSIQHREYDYLELLSNLVPQLDGEIDLWNEVSFDAFSNQNEEESSAGVLARCTADVSLKYI  325 (721)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  325 (721)
                                                                                                   +|+
T Consensus       116 -----------------------------------------------------------------------------~~L  118 (233)
T KOG1644|consen  116 -----------------------------------------------------------------------------EYL  118 (233)
T ss_pred             -----------------------------------------------------------------------------cee
Confidence                                                                                         888


Q ss_pred             ccCCCCccchHHHHHHHHHhCccccccCCCCcChHHHHhhhccc
Q 004969          326 SCHASPICFEKHYRDYMIASLPKLKFLDNLPIRKVDRERATITY  369 (721)
Q Consensus       326 ~~~~~Pi~~~~~yRe~~I~~Lp~Lk~Ldn~~I~k~ere~a~~~~  369 (721)
                      +.+++|++..++||+|++..+|+|++||+..++..+|+.|...|
T Consensus       119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ER~~A~~~f  162 (233)
T KOG1644|consen  119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRKEREEAEVFF  162 (233)
T ss_pred             eecCCchhcccCceeEEEEecCcceEeehhhhhHHHHHHHHHHh
Confidence            89999999999999999999999999999999999999887766

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.56  E-value=1.2e-13  Score=142.11  Aligned_cols=208  Identities=16%  Similarity=0.174  Sum_probs=152.7

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeec-CCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPS-FGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~-~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~  533 (721)
                      .|..|.|+|...+++++|+.|..|++||++++.++..+-+ .||.+.|.++.|+ .++.+++|+|.|.++++|++...+-
T Consensus       137 sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~-~~gd~i~ScGmDhslk~W~l~~~~f  215 (385)
T KOG1034|consen  137 SINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFS-LDGDRIASCGMDHSLKLWRLNVKEF  215 (385)
T ss_pred             cchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEc-CCCCeeeccCCcceEEEEecChhHH
Confidence            5888999999899999999999999999999999988865 5899999999998 7899999999999999999984321


Q ss_pred             --cccc------------c---ccCcce--eEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC-CCcE---------
Q 004969          534 --SIRG------------M---HYGAGT--VTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDIN-SGRR---------  584 (721)
Q Consensus       534 --~~~~------------~---~~~~~~--~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~-s~~~---------  584 (721)
                        .+..            .   ..+-..  .+-.|...|.|+.|  -|+++++-+.++.|..|-.. -++.         
T Consensus       216 ~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw--~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es  293 (385)
T KOG1034|consen  216 KNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW--FGDFILSKSCENAIVCWKPGKLEESIHNVKPPES  293 (385)
T ss_pred             hhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH--HhhheeecccCceEEEEecchhhhhhhccCCCcc
Confidence              0000            0   000000  11124455677777  56889998999999999872 1222         


Q ss_pred             ----EEEEccccCCCeEEE--EEcCCCCcEEEEEECCCcEEEEECCCCCcee--EEEecCCCCeE-EEEEecCCCEEEEE
Q 004969          585 ----LQVFADMHKEHINVV--KFSNHSPSIFATSSFDQDVKLWDLRQKPIQP--CYTASSSKGNV-MVCFSPDDHYLLGK  655 (721)
Q Consensus       585 ----v~~l~~~h~~~V~sI--~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~--~~~~~~~~~~v-sl~fSpdg~~Lasg  655 (721)
                          +..+.- ....|.-+  +|.|.+ ..+|.|...|.|.+||++......  ..........+ ..+||.||..|+..
T Consensus       294 ~~Ti~~~~~~-~~c~iWfirf~~d~~~-~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~v  371 (385)
T KOG1034|consen  294 ATTILGEFDY-PMCDIWFIRFAFDPWQ-KMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLV  371 (385)
T ss_pred             ceeeeeEecc-CccceEEEEEeecHHH-HHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEE
Confidence                222322 23445544  455666 789999999999999999865422  22222233344 78999999999999


Q ss_pred             eCCCcEEEEEcC
Q 004969          656 GSGTSMFVQSLR  667 (721)
Q Consensus       656 s~Dg~I~VWDl~  667 (721)
                      ..|+.|.-||..
T Consensus       372 cdd~~Vwrwdrv  383 (385)
T KOG1034|consen  372 CDDGTVWRWDRV  383 (385)
T ss_pred             eCCCcEEEEEee
Confidence            999999999853

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.55  E-value=3.6e-13  Score=154.83  Aligned_cols=241  Identities=12%  Similarity=0.117  Sum_probs=169.3

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCC-CCCCeEEEEEe-eCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFG-AMNSVLGLCWL-KKYPSKLIAGSDNGSLKLYDIRHMP  532 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~-H~~~V~sl~fs-p~d~~~LaSgs~DGtVrIWDi~~~~  532 (721)
                      .++.+.|+| =...++++...-.|+|||.+.++....+.... ....|+.+.+- ..+..++++|+.||.||||+--...
T Consensus      1066 ~pk~~~~hp-f~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1066 PPKTLKFHP-FEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred             CCceeeecC-CCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence            367788999 44566666666689999999999887776421 23578888885 2344689999999999999764432


Q ss_pred             -CcccccccCcceeE--eccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEE
Q 004969          533 -PSIRGMHYGAGTVT--FDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIF  609 (721)
Q Consensus       533 -~~~~~~~~~~~~~~--~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lL  609 (721)
                       .....+.+..+...  ....+.=.-++|....++++++|+-..|+|||....+.++.+..+....|+++.-+-.+++++
T Consensus      1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i 1224 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNII 1224 (1387)
T ss_pred             cCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceE
Confidence             11111111111100  000111144678888899999998899999999998888887754666778776654445899


Q ss_pred             EEEECCCcEEEEECCCCCce-eEEEecCCCCe---EEEEEecCCCE-EEEEeCCCcEEEEEcCCCcccc------c---c
Q 004969          610 ATSSFDQDVKLWDLRQKPIQ-PCYTASSSKGN---VMVCFSPDDHY-LLGKGSGTSMFVQSLRGDPFRD------F---N  675 (721)
Q Consensus       610 aSgs~DgtIrIWDlrs~~~~-~~~~~~~~~~~---vsl~fSpdg~~-Lasgs~Dg~I~VWDl~g~~l~~------~---~  675 (721)
                      ++|..||.||+||.|..... .+.....|...   +.+.+.+.|-- |++|+.+|.|++||+++.+...      +   .
T Consensus      1225 ~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yG 1304 (1387)
T KOG1517|consen 1225 AAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYG 1304 (1387)
T ss_pred             EEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccC
Confidence            99999999999999975432 23333444433   47888887754 9999999999999999633111      1   2


Q ss_pred             cCeEEEEECCCCCcccccccEEEEecCC
Q 004969          676 MSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       676 ~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      +..+++..|++.       +++|+|+..
T Consensus      1305 s~lTal~VH~ha-------piiAsGs~q 1325 (1387)
T KOG1517|consen 1305 SALTALTVHEHA-------PIIASGSAQ 1325 (1387)
T ss_pred             ccceeeeeccCC-------CeeeecCcc
Confidence            248889999999       999999953

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.55  E-value=3.9e-12  Score=135.74  Aligned_cols=227  Identities=24%  Similarity=0.357  Sum_probs=173.0

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe-EEEEeecCCCCCCeEEEEE-eeCCCC-EEEEEeC-CCeEEEEEcCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN-IVSYIPSFGAMNSVLGLCW-LKKYPS-KLIAGSD-NGSLKLYDIRH  530 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~-~i~~l~~~~H~~~V~sl~f-sp~d~~-~LaSgs~-DGtVrIWDi~~  530 (721)
                      .+.++.+.+ .+..++.++.|+.+.+|+...+. ....+.. .+...+..+.+ . +++. .++..+. |+.+++|+...
T Consensus        67 ~i~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~  143 (466)
T COG2319          67 SITSIAFSP-DGELLLSGSSDGTIKLWDLDNGEKLIKSLEG-LHDSSVSKLALSS-PDGNSILLASSSLDGTVKLWDLST  143 (466)
T ss_pred             eEEEEEECC-CCcEEEEecCCCcEEEEEcCCCceeEEEEec-cCCCceeeEEEEC-CCcceEEeccCCCCccEEEEEecC
Confidence            588999999 88999999999999999998876 5555552 12236777776 5 4444 5555455 99999999987


Q ss_pred             -CCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcE
Q 004969          531 -MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSI  608 (721)
Q Consensus       531 -~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~l  608 (721)
                       ...         ......|...|..++|+|++..+++++. |+.+++|++..+..+..+.+ |...|.+++|+|+++..
T Consensus       144 ~~~~---------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~  213 (466)
T COG2319         144 PGKL---------IRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG-HTDPVSSLAFSPDGGLL  213 (466)
T ss_pred             CCeE---------EEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeecc-CCCceEEEEEcCCcceE
Confidence             221         1223345567889999999998888885 99999999999899999987 99999999999998435


Q ss_pred             EEEEECCCcEEEEECCCCCceeEEEecCCCCeEEE-EEecCCCEEEEEeCCCcEEEEEcCCCc--c---cccccCeEEEE
Q 004969          609 FATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMV-CFSPDDHYLLGKGSGTSMFVQSLRGDP--F---RDFNMSILAAY  682 (721)
Q Consensus       609 LaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl-~fSpdg~~Lasgs~Dg~I~VWDl~g~~--l---~~~~~~V~~v~  682 (721)
                      +++++.|+.|++||...+..... .+.+|.... + .|+|++.++++++.|+.+++|+++...  +   ..|...+..+.
T Consensus       214 ~~~~~~d~~i~~wd~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  291 (466)
T COG2319         214 IASGSSDGTIRLWDLSTGKLLRS-TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVA  291 (466)
T ss_pred             EEEecCCCcEEEEECCCCcEEee-ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEE
Confidence            66669999999999886543221 455555553 3 799999999999999999999998332  1   23467899999


Q ss_pred             ECCCCCcccccccEEEEecCC
Q 004969          683 TRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       683 fsP~~~~~~v~v~lLASgs~~  703 (721)
                      |+|.+       ..+++++..
T Consensus       292 ~~~~~-------~~~~~~~~d  305 (466)
T COG2319         292 FSPDG-------KLLASGSSD  305 (466)
T ss_pred             ECCCC-------CEEEEeeCC
Confidence            99977       666665444

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.55  E-value=3.9e-14  Score=154.94  Aligned_cols=228  Identities=12%  Similarity=0.136  Sum_probs=165.5

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe-------EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEE
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN-------IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYD  527 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~-------~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWD  527 (721)
                      .|+.+.|.|.|...||+++.||.|++|.+..+.       ....+.  +|...|+++.|+|-..+.|++++.|-+|++||
T Consensus       629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt--~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD  706 (1012)
T KOG1445|consen  629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILT--IHGEKITSLRFHPLAADVLAVASYDSTIELWD  706 (1012)
T ss_pred             eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeee--cccceEEEEEecchhhhHhhhhhccceeeeee
Confidence            489999999999999999999999999987543       234444  88999999999998999999999999999999


Q ss_pred             cCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc-EEEEEccccCCCeEEEEEcCCCC
Q 004969          528 IRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR-RLQVFADMHKEHINVVKFSNHSP  606 (721)
Q Consensus       528 i~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~-~v~~l~~~h~~~V~sI~fsPdg~  606 (721)
                      +.+++..         .....|.++|.+++|+|+|..+++.+.||+|++|..++++ +++.-.+.-...--.|.|.-+| 
T Consensus       707 l~~~~~~---------~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdg-  776 (1012)
T KOG1445|consen  707 LANAKLY---------SRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDG-  776 (1012)
T ss_pred             hhhhhhh---------heeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecC-
Confidence            9986541         2233567889999999999999999999999999999754 4555443233344567888898 


Q ss_pred             cEEEEEECC----CcEEEEECCCCCceeEEE--ecCCCCeEEEEEecCCC-EEEEEeCCCcEEEEEcC-CCc----cccc
Q 004969          607 SIFATSSFD----QDVKLWDLRQKPIQPCYT--ASSSKGNVMVCFSPDDH-YLLGKGSGTSMFVQSLR-GDP----FRDF  674 (721)
Q Consensus       607 ~lLaSgs~D----gtIrIWDlrs~~~~~~~~--~~~~~~~vsl~fSpdg~-~Lasgs~Dg~I~VWDl~-g~~----l~~~  674 (721)
                      +++++.+.|    +.|.+||..+-...++++  +.......--.|.+|.. .+++|-.|..|+.|.+- ..+    +..|
T Consensus       777 r~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f  856 (1012)
T KOG1445|consen  777 RIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPF  856 (1012)
T ss_pred             cEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCCCceeeecccc
Confidence            666666665    458899887643333333  33323333345666655 45677788899999876 222    3333


Q ss_pred             ccC--eEEEEECCCCCcccccc
Q 004969          675 NMS--ILAAYTRPSSKSEIVKV  694 (721)
Q Consensus       675 ~~~--V~~v~fsP~~~~~~v~v  694 (721)
                      ..+  -..++|++..++.+..+
T Consensus       857 ~sp~~hqGl~fl~K~~CdV~~V  878 (1012)
T KOG1445|consen  857 MSPVGHQGLAFLQKLKCDVMAV  878 (1012)
T ss_pred             cCCCcccceeeecccccceeee
Confidence            222  23466777666655544

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.54  E-value=1.7e-12  Score=139.75  Aligned_cols=226  Identities=16%  Similarity=0.204  Sum_probs=168.5

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecC--CCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSF--GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP  532 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~--~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~  532 (721)
                      .|....|+|.+.+++++.+ .|.+..|+.+++...+.....  ....-|.+++|. .+ .-+++|..+|.|.||+..+.+
T Consensus       202 ~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~-en-gdviTgDS~G~i~Iw~~~~~~  278 (626)
T KOG2106|consen  202 VVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFL-EN-GDVITGDSGGNILIWSKGTNR  278 (626)
T ss_pred             eEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEc-CC-CCEEeecCCceEEEEeCCCce
Confidence            3678999998888888776 578999999988765543221  123779999997 34 457899999999999997644


Q ss_pred             CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc-----------EEE---------------
Q 004969          533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR-----------RLQ---------------  586 (721)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~-----------~v~---------------  586 (721)
                      ..         ...+.|.+.|.+++.-. ++.+++|+.|..|..||-.-.+           .++               
T Consensus       279 ~~---------k~~~aH~ggv~~L~~lr-~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtr  348 (626)
T KOG2106|consen  279 IS---------KQVHAHDGGVFSLCMLR-DGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTR  348 (626)
T ss_pred             EE---------eEeeecCCceEEEEEec-CccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeecc
Confidence            31         11226778899999854 5667779999999999832100           011               


Q ss_pred             --------------EEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEE
Q 004969          587 --------------VFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYL  652 (721)
Q Consensus       587 --------------~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~L  652 (721)
                                    ... +|......++.+|+. ..++|++.|+.+++|+  ..  ++.++........++.|+|.| .+
T Consensus       349 N~iL~Gt~~~~f~~~v~-gh~delwgla~hps~-~q~~T~gqdk~v~lW~--~~--k~~wt~~~~d~~~~~~fhpsg-~v  421 (626)
T KOG2106|consen  349 NFILQGTLENGFTLTVQ-GHGDELWGLATHPSK-NQLLTCGQDKHVRLWN--DH--KLEWTKIIEDPAECADFHPSG-VV  421 (626)
T ss_pred             ceEEEeeecCCceEEEE-ecccceeeEEcCCCh-hheeeccCcceEEEcc--CC--ceeEEEEecCceeEeeccCcc-eE
Confidence                          112 377788899999998 7999999999999999  33  334444444455689999999 99


Q ss_pred             EEEeCCCcEEEEEcCCCccc---ccccCeEEEEECCCCCcccccccEEEEecCCCccc
Q 004969          653 LGKGSGTSMFVQSLRGDPFR---DFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKEC  707 (721)
Q Consensus       653 asgs~Dg~I~VWDl~g~~l~---~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~~ke~  707 (721)
                      +.|...|.-.|.|.+.+.+.   .-..++..+.|+|++       .+||.|++.....
T Consensus       422 a~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G-------~~lAvgs~d~~iy  472 (626)
T KOG2106|consen  422 AVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDG-------AFLAVGSHDNHIY  472 (626)
T ss_pred             EEeeccceEEEEecccceeEEEEecCCceEEEEEcCCC-------CEEEEecCCCeEE
Confidence            99999999999998854322   225689999999999       9999999885443

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.54  E-value=8.6e-13  Score=135.15  Aligned_cols=228  Identities=14%  Similarity=0.212  Sum_probs=162.9

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCC---CeEEE-Eeec------CCCCCCeEEEEEeeCCCCEEEEEeCCCeEE
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHEN---ENIVS-YIPS------FGAMNSVLGLCWLKKYPSKLIAGSDNGSLK  524 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~t---g~~i~-~l~~------~~H~~~V~sl~fsp~d~~~LaSgs~DGtVr  524 (721)
                      .++.+.|.|+...++++.-...++++|-+..   |.... .+..      ..|.-.|..+-.. .++.++++++.|..|.
T Consensus       134 hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA-~~~k~imsas~dt~i~  212 (420)
T KOG2096|consen  134 HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA-GNAKYIMSASLDTKIC  212 (420)
T ss_pred             CceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeec-CCceEEEEecCCCcEE
Confidence            4889999996666677777777899997642   22111 1111      1455566666654 6678999999999999


Q ss_pred             EEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC---CC-----cEEEEEccccCCCe
Q 004969          525 LYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDIN---SG-----RRLQVFADMHKEHI  596 (721)
Q Consensus       525 IWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~---s~-----~~v~~l~~~h~~~V  596 (721)
                      +|+++. +. +.......        ..-+..+++|+|..++++|--..|++|.+-   .|     ..+..+.| |+..|
T Consensus       213 lw~lkG-q~-L~~idtnq--------~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkG-H~saV  281 (420)
T KOG2096|consen  213 LWDLKG-QL-LQSIDTNQ--------SSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKG-HQSAV  281 (420)
T ss_pred             EEecCC-ce-eeeecccc--------ccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheecc-chhhe
Confidence            999994 33 11111111        123567889999999999988889999874   22     24556777 99999


Q ss_pred             EEEEEcCCCCcEEEEEECCCcEEEEECCCC-------CceeEE---EecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004969          597 NVVKFSNHSPSIFATSSFDQDVKLWDLRQK-------PIQPCY---TASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSL  666 (721)
Q Consensus       597 ~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~-------~~~~~~---~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl  666 (721)
                      ...+|+|+. ..++|.|.||++||||+.-.       +.....   .......++.++.+|.|+.|+.+. ...++++..
T Consensus       282 ~~~aFsn~S-~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~s  359 (420)
T KOG2096|consen  282 LAAAFSNSS-TRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFAS  359 (420)
T ss_pred             eeeeeCCCc-ceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEc
Confidence            999999998 89999999999999998531       111111   112234456899999999998765 668899987


Q ss_pred             C-CCcc----cccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          667 R-GDPF----RDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       667 ~-g~~l----~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      + |+.+    +.|...|.+++|+|+|       ..+|||+..
T Consensus       360 e~g~~~~~~e~~h~~~Is~is~~~~g-------~~~atcGdr  394 (420)
T KOG2096|consen  360 EDGKDYPELEDIHSTTISSISYSSDG-------KYIATCGDR  394 (420)
T ss_pred             ccCccchhHHHhhcCceeeEEecCCC-------cEEeeecce
Confidence            7 4433    3457799999999999       889998864

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.53  E-value=1.4e-12  Score=143.54  Aligned_cols=226  Identities=12%  Similarity=0.196  Sum_probs=164.5

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI  535 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~  535 (721)
                      |..++|.| ||..++.+..+ .+.+||...|..+.+++  +|.+.|.+|+|+ .+|..++||+.|..|.+|.-.-.....
T Consensus        15 i~d~afkP-DGsqL~lAAg~-rlliyD~ndG~llqtLK--gHKDtVycVAys-~dGkrFASG~aDK~VI~W~~klEG~Lk   89 (1081)
T KOG1538|consen   15 INDIAFKP-DGTQLILAAGS-RLLVYDTSDGTLLQPLK--GHKDTVYCVAYA-KDGKRFASGSADKSVIIWTSKLEGILK   89 (1081)
T ss_pred             hheeEECC-CCceEEEecCC-EEEEEeCCCcccccccc--cccceEEEEEEc-cCCceeccCCCceeEEEecccccceee
Confidence            77899999 77777776544 69999999999999998  999999999998 899999999999999999876422110


Q ss_pred             ccccc----------------------------CcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 004969          536 RGMHY----------------------------GAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQV  587 (721)
Q Consensus       536 ~~~~~----------------------------~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~  587 (721)
                      -.+..                            ...+........+.+.+|..+|++++.|-.+|+|.+-+-.....+..
T Consensus        90 YSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I  169 (1081)
T KOG1538|consen   90 YSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKI  169 (1081)
T ss_pred             eccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEE
Confidence            00000                            00001111223578899999999999999999999987553333332


Q ss_pred             -EccccCCCeEEEEEcCCCC----cEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 004969          588 -FADMHKEHINVVKFSNHSP----SIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMF  662 (721)
Q Consensus       588 -l~~~h~~~V~sI~fsPdg~----~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~  662 (721)
                       -.|+..++|.+|+|+|..+    .++++.....++.+|.+.........  .-...+.++.+-++|.|++.|+.|+.++
T Consensus       170 ~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r--~L~FdP~CisYf~NGEy~LiGGsdk~L~  247 (1081)
T KOG1538|consen  170 ERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDR--ALNFDPCCISYFTNGEYILLGGSDKQLS  247 (1081)
T ss_pred             eCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccc--cCCCCchhheeccCCcEEEEccCCCceE
Confidence             2345788999999999752    35666666677777766543211111  1223455889999999999999999999


Q ss_pred             EEEcCCC---cccccccCeEEEEECCCCC
Q 004969          663 VQSLRGD---PFRDFNMSILAAYTRPSSK  688 (721)
Q Consensus       663 VWDl~g~---~l~~~~~~V~~v~fsP~~~  688 (721)
                      +|--.|-   ++..+...|..++.+|+++
T Consensus       248 ~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ  276 (1081)
T KOG1538|consen  248 LFTRDGVRLGTVGEQDSWIWTVQAKPNSQ  276 (1081)
T ss_pred             EEeecCeEEeeccccceeEEEEEEccCCc
Confidence            9987653   3445677999999999993

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.52  E-value=1.9e-13  Score=146.43  Aligned_cols=237  Identities=14%  Similarity=0.230  Sum_probs=170.2

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCCC--eEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENE--NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg--~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~  533 (721)
                      +.++.|+..+.-.+++.+.|..|++|.-...  +....-...+  ..-.||+.. ....++++||..++|+|||++. +.
T Consensus        37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g--d~~~Cv~~~-s~S~y~~sgG~~~~Vkiwdl~~-kl  112 (673)
T KOG4378|consen   37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG--DNAFCVACA-SQSLYEISGGQSGCVKIWDLRA-KL  112 (673)
T ss_pred             ceeeeccccceEEEeecCCceeEEEecccCCCCccceeecccc--chHHHHhhh-hcceeeeccCcCceeeehhhHH-HH
Confidence            6778888832222333445778889875422  2221111112  233444433 3347999999999999999985 33


Q ss_pred             cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969          534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS  613 (721)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs  613 (721)
                      ..+.+.        .|.+.|+++.++-.+.+|++++..|.|.|..+.++.....|.......|.-+.|+|....+|.+++
T Consensus       113 ~hr~lk--------dh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~as  184 (673)
T KOG4378|consen  113 IHRFLK--------DHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIAS  184 (673)
T ss_pred             Hhhhcc--------CCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeec
Confidence            222222        355678999999999999999999999999999999888888534556778999999877888999


Q ss_pred             CCCcEEEEECCCCCceeEEE-ecCCCCeE-EEEEecCC-CEEEEEeCCCcEEEEEcCCCcc---cccccCeEEEEECCCC
Q 004969          614 FDQDVKLWDLRQKPIQPCYT-ASSSKGNV-MVCFSPDD-HYLLGKGSGTSMFVQSLRGDPF---RDFNMSILAAYTRPSS  687 (721)
Q Consensus       614 ~DgtIrIWDlrs~~~~~~~~-~~~~~~~v-sl~fSpdg-~~Lasgs~Dg~I~VWDl~g~~l---~~~~~~V~~v~fsP~~  687 (721)
                      .+|.|.+||+.....  .+. ...|..+. .++|+|.. ..|++.+.|..|++||++.+..   .....+...++|.|+|
T Consensus       185 d~G~VtlwDv~g~sp--~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G  262 (673)
T KOG4378|consen  185 DKGAVTLWDVQGMSP--IFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECG  262 (673)
T ss_pred             cCCeEEEEeccCCCc--ccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCc
Confidence            999999999987643  332 34566666 79999955 5677889999999999984432   2235688899999999


Q ss_pred             CcccccccEEEEecCCCccccCCccc
Q 004969          688 KSEIVKVNLLASTDHCDKECSHGQHS  713 (721)
Q Consensus       688 ~~~~v~v~lLASgs~~~ke~s~~~~~  713 (721)
                             .+|+.|..-.+.-.++.+.
T Consensus       263 -------~~L~aG~s~G~~i~YD~R~  281 (673)
T KOG4378|consen  263 -------TYLCAGNSKGELIAYDMRS  281 (673)
T ss_pred             -------eEEEeecCCceEEEEeccc
Confidence                   8888888775655555554

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.51  E-value=4.4e-13  Score=148.56  Aligned_cols=225  Identities=16%  Similarity=0.231  Sum_probs=164.2

Q ss_pred             CEEEEEECCCeEEEEECCCCeEEEEee-----------------------------------cCCCCCCeEEEEEeeCCC
Q 004969          467 CLMVFGTLDGEIVVVNHENENIVSYIP-----------------------------------SFGAMNSVLGLCWLKKYP  511 (721)
Q Consensus       467 ~~LasGs~DG~I~IWdl~tg~~i~~l~-----------------------------------~~~H~~~V~sl~fsp~d~  511 (721)
                      .-+++++.||+|++|++..+..-..+.                                   ..+....+.+++.+ +++
T Consensus       393 ~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vS-p~g  471 (1080)
T KOG1408|consen  393 GCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVS-PDG  471 (1080)
T ss_pred             cceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEEC-CCc
Confidence            448899999999999987532111100                                   01334578999998 799


Q ss_pred             CEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecC---CCEEEEEeCCCcEEEEECCCC-cEEEE
Q 004969          512 SKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSM---DELFLASGYSKNIALYDINSG-RRLQV  587 (721)
Q Consensus       512 ~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~---~~~lls~g~Dg~IrlWDl~s~-~~v~~  587 (721)
                      .+|++|..-|+++||++..-...         ...-.|...|.|+.++..   ...+++++.|.-|++||+... .++++
T Consensus       472 qhLAsGDr~GnlrVy~Lq~l~~~---------~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qt  542 (1080)
T KOG1408|consen  472 QHLASGDRGGNLRVYDLQELEYT---------CFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQT  542 (1080)
T ss_pred             ceecccCccCceEEEEehhhhhh---------hheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhh
Confidence            99999999999999999874331         112236677899988654   356778888999999998753 34455


Q ss_pred             EccccCCCeEEEEEc-------------------------------------------------CCCCcEEEEEECCCcE
Q 004969          588 FADMHKEHINVVKFS-------------------------------------------------NHSPSIFATSSFDQDV  618 (721)
Q Consensus       588 l~~~h~~~V~sI~fs-------------------------------------------------Pdg~~lLaSgs~DgtI  618 (721)
                      +.+ |...|++|.|.                                                 |.. .++++++.|+.|
T Consensus       543 ld~-HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~-k~v~t~cQDrni  620 (1080)
T KOG1408|consen  543 LDG-HSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTS-KLVVTVCQDRNI  620 (1080)
T ss_pred             hcc-cccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCc-ceEEEEecccce
Confidence            554 66666665554                                                 333 468999999999


Q ss_pred             EEEECCCCCceeEEEec-CCCC-eEEEEEecCCCEEEEEeCCCcEEEEEcC-CC---cccccccCeEEEEECCCCCcccc
Q 004969          619 KLWDLRQKPIQPCYTAS-SSKG-NVMVCFSPDDHYLLGKGSGTSMFVQSLR-GD---PFRDFNMSILAAYTRPSSKSEIV  692 (721)
Q Consensus       619 rIWDlrs~~~~~~~~~~-~~~~-~vsl~fSpdg~~Lasgs~Dg~I~VWDl~-g~---~l~~~~~~V~~v~fsP~~~~~~v  692 (721)
                      +|||+.+++....++.. +|.+ .+.+...|.|-|+++...|.++.++|.- |.   ...+|...|..+.|.++.     
T Consensus       621 rif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDC-----  695 (1080)
T KOG1408|consen  621 RIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDC-----  695 (1080)
T ss_pred             EEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccc-----
Confidence            99999999876666543 3323 4589999999999999999999999986 33   345677789999999998     


Q ss_pred             cccEEEEecCCCccccCCcc
Q 004969          693 KVNLLASTDHCDKECSHGQH  712 (721)
Q Consensus       693 ~v~lLASgs~~~ke~s~~~~  712 (721)
                        .-|.+.++.  ++.+-++
T Consensus       696 --kHlISvsgD--gCIFvW~  711 (1080)
T KOG1408|consen  696 --KHLISVSGD--GCIFVWK  711 (1080)
T ss_pred             --hhheeecCC--ceEEEEE
Confidence              566666665  4555443

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.51  E-value=7.5e-13  Score=134.11  Aligned_cols=201  Identities=15%  Similarity=0.230  Sum_probs=150.4

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeE-EEEeec---CCCCCCeEEEEEee-CCCCEEEEEeCCCeEEEEEcC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENI-VSYIPS---FGAMNSVLGLCWLK-KYPSKLIAGSDNGSLKLYDIR  529 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~-i~~l~~---~~H~~~V~sl~fsp-~d~~~LaSgs~DGtVrIWDi~  529 (721)
                      +|.|+.|.| ++..+++-. |..|.+|+++.+.. +..+..   .+|....++-+|+| .+++.+++ ..|+++..||++
T Consensus       125 ~i~cvew~P-ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~R  201 (370)
T KOG1007|consen  125 KINCVEWEP-NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLR  201 (370)
T ss_pred             ceeeEEEcC-CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCcEEEEEcc
Confidence            589999999 888777765 88899999987765 444432   24566788889998 45666655 567899999999


Q ss_pred             CCCCcccccccCcceeEeccCCCeEEEEEecCCCEEE-EEeCCCcEEEEECCC-CcEEEEEccccCCCeEEEEEcCCCCc
Q 004969          530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFL-ASGYSKNIALYDINS-GRRLQVFADMHKEHINVVKFSNHSPS  607 (721)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~ll-s~g~Dg~IrlWDl~s-~~~v~~l~~~h~~~V~sI~fsPdg~~  607 (721)
                      +..+...        +.-.|...|..+.|+|..++++ ++|+||.|++||.|. ..+++++.+ |..+|.+|.|+|....
T Consensus       202 T~~~~~s--------I~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~-HsHWvW~VRfn~~hdq  272 (370)
T KOG1007|consen  202 TMKKNNS--------IEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPG-HSHWVWAVRFNPEHDQ  272 (370)
T ss_pred             chhhhcc--------hhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCC-CceEEEEEEecCccce
Confidence            8665222        2223334579999999877654 566789999999996 567888887 9999999999998878


Q ss_pred             EEEEEECCCcEEEEECCCCCc----------------------ee-----EEEecCCCCeE-EEEEecCCCEE-EEEeCC
Q 004969          608 IFATSSFDQDVKLWDLRQKPI----------------------QP-----CYTASSSKGNV-MVCFSPDDHYL-LGKGSG  658 (721)
Q Consensus       608 lLaSgs~DgtIrIWDlrs~~~----------------------~~-----~~~~~~~~~~v-sl~fSpdg~~L-asgs~D  658 (721)
                      ++++|+.|..|.+|-..+-..                      .+     +.++..|...+ +++||.-..++ ++-+.|
T Consensus       273 LiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYD  352 (370)
T KOG1007|consen  273 LILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYD  352 (370)
T ss_pred             EEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccC
Confidence            999999999999997643110                      01     12344566667 89999866665 566899


Q ss_pred             CcEEEEEcC
Q 004969          659 TSMFVQSLR  667 (721)
Q Consensus       659 g~I~VWDl~  667 (721)
                      |.+.|=.+.
T Consensus       353 GRviIs~V~  361 (370)
T KOG1007|consen  353 GRVIISSVP  361 (370)
T ss_pred             ceEEeecCC
Confidence            999887765

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.50  E-value=1.7e-12  Score=144.19  Aligned_cols=227  Identities=12%  Similarity=0.167  Sum_probs=171.2

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeE--EEEe-ecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCC-
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENI--VSYI-PSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH-  530 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~--i~~l-~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~-  530 (721)
                      .|+.++|+| .|.++++.+.|-+-|++-.- |+.  -+.+ +.+-|...++|++|. +....+++|.+...+|+|+... 
T Consensus       363 ~V~dv~W~p-sGeflLsvs~DQTTRlFa~w-g~q~~wHEiaRPQiHGyDl~c~~~v-n~~~~FVSgAdEKVlRvF~aPk~  439 (764)
T KOG1063|consen  363 GVKDVDWDP-SGEFLLSVSLDQTTRLFARW-GRQQEWHEIARPQIHGYDLTCLSFV-NEDLQFVSGADEKVLRVFEAPKS  439 (764)
T ss_pred             cceeeeecC-CCCEEEEeccccceeeeccc-ccccceeeecccccccccceeeehc-cCCceeeecccceeeeeecCcHH
Confidence            489999999 89999999999999998765 221  1111 223566789999997 4477899999999999998762 


Q ss_pred             ---------C----------------------CCccc--ccccCc--------------------------------c-e
Q 004969          531 ---------M----------------------PPSIR--GMHYGA--------------------------------G-T  544 (721)
Q Consensus       531 ---------~----------------------~~~~~--~~~~~~--------------------------------~-~  544 (721)
                               +                      +....  ...+..                                . .
T Consensus       440 fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~  519 (764)
T KOG1063|consen  440 FVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVH  519 (764)
T ss_pred             HHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhH
Confidence                     0                      00000  000000                                0 0


Q ss_pred             eEeccCCCeEEEEEecCCCEEEEEeC-----CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEE
Q 004969          545 VTFDEFDQLTSVHVNSMDELFLASGY-----SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVK  619 (721)
Q Consensus       545 ~~~~~~~~V~sv~~sp~~~~lls~g~-----Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIr  619 (721)
                      --+.|...|++++.+|+++.++++..     -..|++|+..+...++.+.+ |.-.|+.++|+|+| ++|++.|.|+++.
T Consensus       520 KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~-HsLTVT~l~FSpdg-~~LLsvsRDRt~s  597 (764)
T KOG1063|consen  520 KLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG-HSLTVTRLAFSPDG-RYLLSVSRDRTVS  597 (764)
T ss_pred             HhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc-cceEEEEEEECCCC-cEEEEeecCceEE
Confidence            01225567999999999999999874     35699999999988888987 99999999999999 8999999999999


Q ss_pred             EEECCCCCceeEE---EecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCC---c-----ccccccCeEEEEECCCC
Q 004969          620 LWDLRQKPIQPCY---TASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGD---P-----FRDFNMSILAAYTRPSS  687 (721)
Q Consensus       620 IWDlrs~~~~~~~---~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~---~-----l~~~~~~V~~v~fsP~~  687 (721)
                      +|...... ...+   ....|..++ .+.|+|++.+++|+|.|.+|+||.....   .     ...+...|.++++.|.-
T Consensus       598 l~~~~~~~-~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~  676 (764)
T KOG1063|consen  598 LYEVQEDI-KDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVD  676 (764)
T ss_pred             eeeeeccc-chhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccc
Confidence            99985432 1122   256788888 9999999999999999999999998743   1     22346789999998754

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.48  E-value=3.4e-12  Score=132.79  Aligned_cols=202  Identities=17%  Similarity=0.240  Sum_probs=144.9

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI  535 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~  535 (721)
                      ++.++||+ .-.-+|++..|-.|++||-.. ++...++. .....|++++|-|..+..|+.|+.. -|.+|.....-..-
T Consensus       101 lr~~aWhq-H~~~fava~nddvVriy~kss-t~pt~Lks-~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~  176 (445)
T KOG2139|consen  101 LRGVAWHQ-HIIAFAVATNDDVVRIYDKSS-TCPTKLKS-VSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNAN  176 (445)
T ss_pred             eeeEeech-hhhhhhhhccCcEEEEeccCC-CCCceecc-hhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccc
Confidence            67899999 666788899999999999876 55555653 3357899999998777877777765 68899887533211


Q ss_pred             c----ccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEE
Q 004969          536 R----GMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFA  610 (721)
Q Consensus       536 ~----~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLa  610 (721)
                      .    .-..+........+.+|+++.|++++..+++++. |..|.|||..++..+.-... ..+.++-+.|+||| .++.
T Consensus       177 r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~-glgg~slLkwSPdg-d~lf  254 (445)
T KOG2139|consen  177 RNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK-GLGGFSLLKWSPDG-DVLF  254 (445)
T ss_pred             cccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc-CCCceeeEEEcCCC-CEEE
Confidence            1    1122333444555678999999999999999985 78899999999887655532 56778899999999 7888


Q ss_pred             EEECCCcEEEEECCC-CCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004969          611 TSSFDQDVKLWDLRQ-KPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSL  666 (721)
Q Consensus       611 Sgs~DgtIrIWDlrs-~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl  666 (721)
                      ++.-|+..++|.... ....+-.  -+.......+|+|+|++|+-+. .|.-.+|.+
T Consensus       255 aAt~davfrlw~e~q~wt~erw~--lgsgrvqtacWspcGsfLLf~~-sgsp~lysl  308 (445)
T KOG2139|consen  255 AATCDAVFRLWQENQSWTKERWI--LGSGRVQTACWSPCGSFLLFAC-SGSPRLYSL  308 (445)
T ss_pred             Eecccceeeeehhcccceeccee--ccCCceeeeeecCCCCEEEEEE-cCCceEEEE
Confidence            899999999996543 3222221  2222333889999999887655 233334443

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.48  E-value=3e-11  Score=128.93  Aligned_cols=211  Identities=24%  Similarity=0.399  Sum_probs=159.0

Q ss_pred             eEEEEE-eCCCCC-EEEEEEC-CCeEEEEECCC-CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeC-CCeEEEEEcCC
Q 004969          456 PRQFEY-HPSISC-LMVFGTL-DGEIVVVNHEN-ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD-NGSLKLYDIRH  530 (721)
Q Consensus       456 V~~laf-sP~dg~-~LasGs~-DG~I~IWdl~t-g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~-DGtVrIWDi~~  530 (721)
                      +..+.+ ++ ++. .++..+. |+.+++|+... ......+.  .|...|..++|+ +++..+++++. |+.+++|++..
T Consensus       112 ~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  187 (466)
T COG2319         112 VSKLALSSP-DGNSILLASSSLDGTVKLWDLSTPGKLIRTLE--GHSESVTSLAFS-PDGKLLASGSSLDGTIKLWDLRT  187 (466)
T ss_pred             eeeEEEECC-CcceEEeccCCCCccEEEEEecCCCeEEEEEe--cCcccEEEEEEC-CCCCEEEecCCCCCceEEEEcCC
Confidence            555556 77 555 5555444 99999999987 66666666  888999999998 56668888885 99999999997


Q ss_pred             CCCcccccccCcceeEe-ccCCCeEEEEEecCCCEEEEE-eCCCcEEEEECCCCcEEE-EEccccCCCeEEEEEcCCCCc
Q 004969          531 MPPSIRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLAS-GYSKNIALYDINSGRRLQ-VFADMHKEHINVVKFSNHSPS  607 (721)
Q Consensus       531 ~~~~~~~~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~-g~Dg~IrlWDl~s~~~v~-~l~~~h~~~V~sI~fsPdg~~  607 (721)
                      +..          ...+ .|...|.+++|+|++..++++ +.|+.|++||...+..+. .+.+ |...+ ...|+|++ .
T Consensus       188 ~~~----------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~-~~~~~~~~-~  254 (466)
T COG2319         188 GKP----------LSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSG-HSDSV-VSSFSPDG-S  254 (466)
T ss_pred             Cce----------EEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCC-CCcce-eEeECCCC-C
Confidence            332          1111 256789999999888744444 789999999999888887 5665 77775 44899998 7


Q ss_pred             EEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCc----cc--ccccCeEE
Q 004969          608 IFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDP----FR--DFNMSILA  680 (721)
Q Consensus       608 lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~----l~--~~~~~V~~  680 (721)
                      .+++++.|+.+++||.+.... ......+|...+ ++.|+|++..+++++.|+.+.+|+.....    ..  .|...+..
T Consensus       255 ~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (466)
T COG2319         255 LLASGSSDGTIRLWDLRSSSS-LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSS  333 (466)
T ss_pred             EEEEecCCCcEEEeeecCCCc-EEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEE
Confidence            888999999999999997654 122224555555 78999999999989989889999887332    22  34445788


Q ss_pred             EEEC
Q 004969          681 AYTR  684 (721)
Q Consensus       681 v~fs  684 (721)
                      +.|.
T Consensus       334 ~~~~  337 (466)
T COG2319         334 LSFS  337 (466)
T ss_pred             EEEC
Confidence            8883

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.47  E-value=7.7e-14  Score=156.88  Aligned_cols=194  Identities=13%  Similarity=0.200  Sum_probs=158.6

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      +|+|..|.. .|.++++|++|..|+||..+++.+....+  ||.+.|+.++.+ .++.+++++|.|..|++|.+..+.+.
T Consensus       192 aVyca~fDr-tg~~Iitgsdd~lvKiwS~et~~~lAs~r--Ghs~ditdlavs-~~n~~iaaaS~D~vIrvWrl~~~~pv  267 (1113)
T KOG0644|consen  192 AVYCAIFDR-TGRYIITGSDDRLVKIWSMETARCLASCR--GHSGDITDLAVS-SNNTMIAAASNDKVIRVWRLPDGAPV  267 (1113)
T ss_pred             heeeeeecc-ccceEeecCccceeeeeeccchhhhccCC--CCccccchhccc-hhhhhhhhcccCceEEEEecCCCchH
Confidence            699999999 99999999999999999999999999888  999999999986 67788999999999999999987652


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC----------------------------------
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDIN----------------------------------  580 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~----------------------------------  580 (721)
                               .+.+.|.+.|++++|+|..    +++.||++++||.+                                  
T Consensus       268 ---------svLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tg  334 (1113)
T KOG0644|consen  268 ---------SVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTG  334 (1113)
T ss_pred             ---------HHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccc
Confidence                     2344566677888887754    56677888888776                                  


Q ss_pred             -------------------------------------------------CCcEEEEEccccCCCeEEEEEcCCCCcEEEE
Q 004969          581 -------------------------------------------------SGRRLQVFADMHKEHINVVKFSNHSPSIFAT  611 (721)
Q Consensus       581 -------------------------------------------------s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaS  611 (721)
                                                                       +|...+.+. +|...++.+.++|.++.+..+
T Consensus       335 s~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~-ghsd~~yvLd~Hpfn~ri~ms  413 (1113)
T KOG0644|consen  335 SRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLM-GHSDEVYVLDVHPFNPRIAMS  413 (1113)
T ss_pred             cCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhc-ccccceeeeeecCCCcHhhhh
Confidence                                                             111111222 367788999999999888899


Q ss_pred             EECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          612 SSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       612 gs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                      ++.||...|||+-.+.....+. .+|...+..+||+||..++....-|.++|....
T Consensus       414 ag~dgst~iwdi~eg~pik~y~-~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~g  468 (1113)
T KOG0644|consen  414 AGYDGSTIIWDIWEGIPIKHYF-IGHGKLVDGKFSQDGTSIALSDDHGQLYILGTG  468 (1113)
T ss_pred             ccCCCceEeeecccCCcceeee-cccceeeccccCCCCceEecCCCCCceEEeccC
Confidence            9999999999999886665555 557777788999999999988888899888654

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.45  E-value=1.5e-12  Score=141.10  Aligned_cols=211  Identities=15%  Similarity=0.225  Sum_probs=152.1

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCC-CEEEEEeCCCeEEEEEcCCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYP-SKLIAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~-~~LaSgs~DGtVrIWDi~~~~~  533 (721)
                      -|.|++|+. +|.+|++|++|-.+.|||.-..+.++.+.. ||...|.++.|.|..+ ..++||..|..|+++|+...+.
T Consensus        52 CVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~KllhsI~T-gHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~  129 (758)
T KOG1310|consen   52 CVNCLEWNA-DGELLASGSDDTRLIVWDPFEYKLLHSIST-GHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKE  129 (758)
T ss_pred             eecceeecC-CCCEEeecCCcceEEeecchhcceeeeeec-ccccceeEEeeeccCCCeEEEeccCcceEEEEecccccc
Confidence            389999999 999999999999999999988888887764 9999999999998655 4778899999999999986332


Q ss_pred             cccccccCcceeEe-ccCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCcE-------EEEEccc--cCCCeEEEEEc
Q 004969          534 SIRGMHYGAGTVTF-DEFDQLTSVHVNSMD-ELFLASGYSKNIALYDINSGRR-------LQVFADM--HKEHINVVKFS  602 (721)
Q Consensus       534 ~~~~~~~~~~~~~~-~~~~~V~sv~~sp~~-~~lls~g~Dg~IrlWDl~s~~~-------v~~l~~~--h~~~V~sI~fs  602 (721)
                      .-...........+ .|...|..++..|.+ ..+.+++.||+|+-+|++....       ...+..-  .--...++.++
T Consensus       130 ~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltis  209 (758)
T KOG1310|consen  130 GGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTIS  209 (758)
T ss_pred             cccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeec
Confidence            11111111111112 244667788888888 6788889999999999996321       1111110  12346789999


Q ss_pred             CCCCcEEEEEECCCcEEEEECCCCC-----------ce-----eEEE-ecCCC----C--------eEEEEEecCCCEEE
Q 004969          603 NHSPSIFATSSFDQDVKLWDLRQKP-----------IQ-----PCYT-ASSSK----G--------NVMVCFSPDDHYLL  653 (721)
Q Consensus       603 Pdg~~lLaSgs~DgtIrIWDlrs~~-----------~~-----~~~~-~~~~~----~--------~vsl~fSpdg~~La  653 (721)
                      |..+++|++|+.|...++||.|...           +-     .+.. .++|.    +        ..-++|+|+|.-|+
T Consensus       210 p~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElL  289 (758)
T KOG1310|consen  210 PSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELL  289 (758)
T ss_pred             CCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEE
Confidence            9999999999999999999954310           10     0111 11221    1        12478999999888


Q ss_pred             EEeCCCcEEEEEcC
Q 004969          654 GKGSGTSMFVQSLR  667 (721)
Q Consensus       654 sgs~Dg~I~VWDl~  667 (721)
                      ..-....|+++|+.
T Consensus       290 vs~~gEhVYlfdvn  303 (758)
T KOG1310|consen  290 VSWGGEHVYLFDVN  303 (758)
T ss_pred             EeeCCeEEEEEeec
Confidence            77767799999997

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.45  E-value=2e-11  Score=127.74  Aligned_cols=193  Identities=18%  Similarity=0.281  Sum_probs=149.7

Q ss_pred             CeEEEEEeCCCCCEEEEEECC--CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLD--GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP  532 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~D--G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~  532 (721)
                      .|--+-|+.   .++|..+.+  +.+++++.+.+..+..+..   ..+|.+|.++   .+.|+++-.+ .|.|||++..+
T Consensus        48 ~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~f---pt~IL~VrmN---r~RLvV~Lee-~IyIydI~~Mk  117 (391)
T KOG2110|consen   48 SIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTICEIFF---PTSILAVRMN---RKRLVVCLEE-SIYIYDIKDMK  117 (391)
T ss_pred             EEEEeeccc---ceeEEEecCCCceEEEEEcccCceEEEEec---CCceEEEEEc---cceEEEEEcc-cEEEEecccce
Confidence            466667776   666666554  4589999998888887753   4689999985   4567776665 49999999976


Q ss_pred             CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC--CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEE
Q 004969          533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY--SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFA  610 (721)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~--Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLa  610 (721)
                      ..-. +..     ...+...+.+++.++.+.+++.-+.  .|.|.+||..+-+++..+.. |.+.+.+++|+|+| .++|
T Consensus       118 lLhT-I~t-----~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~a-H~~~lAalafs~~G-~llA  189 (391)
T KOG2110|consen  118 LLHT-IET-----TPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINA-HKGPLAALAFSPDG-TLLA  189 (391)
T ss_pred             eehh-hhc-----cCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEe-cCCceeEEEECCCC-CEEE
Confidence            5211 110     1123344677777777778887653  69999999999999999995 99999999999999 8999


Q ss_pred             EEECCCc-EEEEECCCCCceeEEEecCCCCeE---EEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          611 TSSFDQD-VKLWDLRQKPIQPCYTASSSKGNV---MVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       611 Sgs~Dgt-IrIWDlrs~~~~~~~~~~~~~~~v---sl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                      |+|..|+ ||||.+.+++.  ++++......+   +++|+|++++|++.+..++|+||.+.
T Consensus       190 TASeKGTVIRVf~v~~G~k--l~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~  248 (391)
T KOG2110|consen  190 TASEKGTVIRVFSVPEGQK--LYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLE  248 (391)
T ss_pred             EeccCceEEEEEEcCCccE--eeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence            9999998 69999999844  66665444443   89999999999999999999999987

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.45  E-value=3.7e-12  Score=130.45  Aligned_cols=154  Identities=14%  Similarity=0.183  Sum_probs=123.8

Q ss_pred             eEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 004969          501 VLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDIN  580 (721)
Q Consensus       501 V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~  580 (721)
                      ..++.|+ +.|.+|++|..||.|-|||+.+...         ....-.|-.+|++++|+++|..+++++.|..|.+||+.
T Consensus        26 a~~~~Fs-~~G~~lAvGc~nG~vvI~D~~T~~i---------ar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~   95 (405)
T KOG1273|consen   26 AECCQFS-RWGDYLAVGCANGRVVIYDFDTFRI---------ARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLL   95 (405)
T ss_pred             cceEEec-cCcceeeeeccCCcEEEEEccccch---------hhhhhccccceeEEEecCCCCEeeeecCCceeEEEecc
Confidence            6789998 7899999999999999999998542         11222355789999999999999999999999999999


Q ss_pred             CCcEEEEEccccCCCeEEEEEcC-----------------------------------------------CCCcEEEEEE
Q 004969          581 SGRRLQVFADMHKEHINVVKFSN-----------------------------------------------HSPSIFATSS  613 (721)
Q Consensus       581 s~~~v~~l~~~h~~~V~sI~fsP-----------------------------------------------dg~~lLaSgs  613 (721)
                      .|.+++.+.  ..++|....|+|                                               .| +++++|.
T Consensus        96 ~gs~l~rir--f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g-~yIitGt  172 (405)
T KOG1273|consen   96 KGSPLKRIR--FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRG-KYIITGT  172 (405)
T ss_pred             CCCceeEEE--ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCC-CEEEEec
Confidence            998887665  444444444433                                               34 6899999


Q ss_pred             CCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          614 FDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       614 ~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                      ..|.+.++|..+.++...+.......+-.+.++..|++|+..+.|..|++|+++
T Consensus       173 sKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~  226 (405)
T KOG1273|consen  173 SKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS  226 (405)
T ss_pred             CcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence            999999999999877655554432333379999999999999999999999986

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.44  E-value=3e-12  Score=142.34  Aligned_cols=230  Identities=14%  Similarity=0.150  Sum_probs=173.7

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCC-CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHEN-ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~t-g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      -....|+| +++.+++-+..|-.++|..+. .......-..||.+.|.+|+|. +.+++|+|+|.|-|-|++---..+..
T Consensus       319 F~g~lw~~-n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~-psGeflLsvs~DQTTRlFa~wg~q~~  396 (764)
T KOG1063|consen  319 FWGGLWSP-NSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWD-PSGEFLLSVSLDQTTRLFARWGRQQE  396 (764)
T ss_pred             eeeEEEcC-CCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeec-CCCCEEEEeccccceeeecccccccc
Confidence            46788999 889999999999999999432 2222222234999999999998 78999999999999999877643332


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC----------C----------------------
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINS----------G----------------------  582 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s----------~----------------------  582 (721)
                      .     |.-...-.|...++|+++-+..-.|++|+..+.+|+|+...          +                      
T Consensus       397 w-----HEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSn  471 (764)
T KOG1063|consen  397 W-----HEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSN  471 (764)
T ss_pred             e-----eeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccC
Confidence            1     11111112445688998866666777777788899997531          0                      


Q ss_pred             cEE--------------------------------------------EEEccccCCCeEEEEEcCCCCcEEEEEECCC--
Q 004969          583 RRL--------------------------------------------QVFADMHKEHINVVKFSNHSPSIFATSSFDQ--  616 (721)
Q Consensus       583 ~~v--------------------------------------------~~l~~~h~~~V~sI~fsPdg~~lLaSgs~Dg--  616 (721)
                      +..                                            +++.| |...|++++.+|+| +++|+++...  
T Consensus       472 Ka~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYG-HGyEv~~l~~s~~g-nliASaCKS~~~  549 (764)
T KOG1063|consen  472 KAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYG-HGYEVYALAISPTG-NLIASACKSSLK  549 (764)
T ss_pred             CCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhcc-CceeEEEEEecCCC-CEEeehhhhCCc
Confidence            000                                            02224 88899999999999 8999987643  


Q ss_pred             ---cEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCC--------cccccccCeEEEEEC
Q 004969          617 ---DVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGD--------PFRDFNMSILAAYTR  684 (721)
Q Consensus       617 ---tIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~--------~l~~~~~~V~~v~fs  684 (721)
                         .|++|+..+...  ...+.+|.-.+ .++|||||+||++.+.|.++.+|.....        ..+.|.--|..+.|+
T Consensus       550 ehAvI~lw~t~~W~~--~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~  627 (764)
T KOG1063|consen  550 EHAVIRLWNTANWLQ--VQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWS  627 (764)
T ss_pred             cceEEEEEeccchhh--hheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccC
Confidence               599999988744  44677787777 8999999999999999999999987521        145677789999999


Q ss_pred             CCCCcccccccEEEEecCC
Q 004969          685 PSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       685 P~~~~~~v~v~lLASgs~~  703 (721)
                      |++       ..+||+|+.
T Consensus       628 pde-------~~FaTaSRD  639 (764)
T KOG1063|consen  628 PDE-------KYFATASRD  639 (764)
T ss_pred             ccc-------ceeEEecCC
Confidence            999       779999987

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.43  E-value=6.4e-11  Score=128.32  Aligned_cols=221  Identities=11%  Similarity=0.125  Sum_probs=142.2

Q ss_pred             eEEEEEeCCCCCEEEEEE-CCCeEEEEECC-CCeE--EEEeecCCCCCCeEEEEEeeCCCCEEEEEe-CCCeEEEEEcCC
Q 004969          456 PRQFEYHPSISCLMVFGT-LDGEIVVVNHE-NENI--VSYIPSFGAMNSVLGLCWLKKYPSKLIAGS-DNGSLKLYDIRH  530 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs-~DG~I~IWdl~-tg~~--i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs-~DGtVrIWDi~~  530 (721)
                      +..++++| ++++|++++ .++.|.+|++. +|..  +....   ..+....++|+ ++++++++++ .++.|.+|++.+
T Consensus        37 ~~~l~~sp-d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~---~~~~p~~i~~~-~~g~~l~v~~~~~~~v~v~~~~~  111 (330)
T PRK11028         37 VQPMVISP-DKRHLYVGVRPEFRVLSYRIADDGALTFAAESP---LPGSPTHISTD-HQGRFLFSASYNANCVSVSPLDK  111 (330)
T ss_pred             CccEEECC-CCCEEEEEECCCCcEEEEEECCCCceEEeeeec---CCCCceEEEEC-CCCCEEEEEEcCCCeEEEEEECC
Confidence            56789999 888876664 58899999997 3433  22222   23356789998 6777777766 489999999974


Q ss_pred             CCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCcEEE-----EEccccCCCeEEEEEcCC
Q 004969          531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-SKNIALYDINSGRRLQ-----VFADMHKEHINVVKFSNH  604 (721)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-Dg~IrlWDl~s~~~v~-----~l~~~h~~~V~sI~fsPd  604 (721)
                      .......      .....+......++++|+++.+++++. ++.|.+||+.+...+.     ............++|+|+
T Consensus       112 ~g~~~~~------~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pd  185 (330)
T PRK11028        112 DGIPVAP------IQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPN  185 (330)
T ss_pred             CCCCCCc------eeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCC
Confidence            3211110      111122234577889999999987774 6999999998633221     111112345678999999


Q ss_pred             CCcEEEEEE-CCCcEEEEECCC--CCceeEEEecCC-------CCeEEEEEecCCCEEEEEeC-CCcEEEEEcC--CCcc
Q 004969          605 SPSIFATSS-FDQDVKLWDLRQ--KPIQPCYTASSS-------KGNVMVCFSPDDHYLLGKGS-GTSMFVQSLR--GDPF  671 (721)
Q Consensus       605 g~~lLaSgs-~DgtIrIWDlrs--~~~~~~~~~~~~-------~~~vsl~fSpdg~~Lasgs~-Dg~I~VWDl~--g~~l  671 (721)
                      | ++++++. .+++|.+||+..  +....+..+...       .....+.++|+|++++++.. ++.|.+|++.  +..+
T Consensus       186 g-~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~  264 (330)
T PRK11028        186 Q-QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVL  264 (330)
T ss_pred             C-CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeE
Confidence            9 5665555 499999999973  333223222211       11225889999999998854 7899999985  2221


Q ss_pred             --ccc---ccCeEEEEECCCCC
Q 004969          672 --RDF---NMSILAAYTRPSSK  688 (721)
Q Consensus       672 --~~~---~~~V~~v~fsP~~~  688 (721)
                        ..+   ......+.++|+++
T Consensus       265 ~~~~~~~~~~~p~~~~~~~dg~  286 (330)
T PRK11028        265 SFEGHQPTETQPRGFNIDHSGK  286 (330)
T ss_pred             EEeEEEeccccCCceEECCCCC
Confidence              111   12345689999994

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.43  E-value=9.9e-12  Score=127.78  Aligned_cols=229  Identities=17%  Similarity=0.229  Sum_probs=164.9

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCCC-------eE-----EEEeecCCCCCCeEEEEEee------CCCCEEEEE
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENE-------NI-----VSYIPSFGAMNSVLGLCWLK------KYPSKLIAG  517 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg-------~~-----i~~l~~~~H~~~V~sl~fsp------~d~~~LaSg  517 (721)
                      .....|+| ||.-|++-+.|..+.+|++...       ..     ...++. -....|..-+|-+      |+..++++.
T Consensus        52 ~kgckWSP-DGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~-~eg~tvydy~wYs~M~s~qP~t~l~a~s  129 (406)
T KOG2919|consen   52 LKGCKWSP-DGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRY-QEGETVYDYCWYSRMKSDQPSTNLFAVS  129 (406)
T ss_pred             hccceeCC-CCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEe-ccCCEEEEEEeeeccccCCCccceeeec
Confidence            45688999 9999999999999999998521       10     111111 1234577777753      566799999


Q ss_pred             eCCCeEEEEEcCCCCCcccccccCcceeEeccC---CCeEEEEEecCCCEEEEEeCCCcEEEEEC-CCCcEE--EE-Ec-
Q 004969          518 SDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEF---DQLTSVHVNSMDELFLASGYSKNIALYDI-NSGRRL--QV-FA-  589 (721)
Q Consensus       518 s~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~---~~V~sv~~sp~~~~lls~g~Dg~IrlWDl-~s~~~v--~~-l~-  589 (721)
                      +.|.-|++||.-+++..       .....+.|.   ....+++|+|+|..|++| ....|+++|+ |.|+.-  .. +. 
T Consensus       130 sr~~PIh~wdaftG~lr-------aSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~  201 (406)
T KOG2919|consen  130 SRDQPIHLWDAFTGKLR-------ASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTK  201 (406)
T ss_pred             cccCceeeeeccccccc-------cchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhc
Confidence            99999999999998762       111122222   235789999999998865 5688999999 555422  11 11 


Q ss_pred             --cccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeC-CCcEEEEE
Q 004969          590 --DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGS-GTSMFVQS  665 (721)
Q Consensus       590 --~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~-Dg~I~VWD  665 (721)
                        .+..+-+.+++|+|.....++.|+...++-||.-..+  .+++.+.+|.+.| -+.|.++|+.|++|.. |..|-.||
T Consensus       202 ~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~--~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WD  279 (406)
T KOG2919|consen  202 GKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR--RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWD  279 (406)
T ss_pred             ccccccceeeeeeccCCCCcceeeecccceeeeEecCCC--CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEe
Confidence              1146789999999998779999999999888877766  4467777887777 8999999999999875 67899999


Q ss_pred             cC--CCccc---cccc-CeEEEEE--CCCCCcccccccEEEEecCC
Q 004969          666 LR--GDPFR---DFNM-SILAAYT--RPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       666 l~--g~~l~---~~~~-~V~~v~f--sP~~~~~~v~v~lLASgs~~  703 (721)
                      +|  +.++.   .|.. .-..+.|  .|++       ++||+|+..
T Consensus       280 iR~~~~pv~~L~rhv~~TNQRI~FDld~~~-------~~LasG~td  318 (406)
T KOG2919|consen  280 IRYSRDPVYALERHVGDTNQRILFDLDPKG-------EILASGDTD  318 (406)
T ss_pred             ehhccchhhhhhhhccCccceEEEecCCCC-------ceeeccCCC
Confidence            98  44432   2322 3344555  5777       899999665

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.42  E-value=2e-12  Score=137.13  Aligned_cols=197  Identities=18%  Similarity=0.187  Sum_probs=146.3

Q ss_pred             EEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCccc
Q 004969          457 RQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIR  536 (721)
Q Consensus       457 ~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~  536 (721)
                      .+++|++ +|..+++|+.||++|||++.....+....  .|.+.|.++.|+ +++.+|++-+.| ..+||+.+++.. ++
T Consensus       148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~--~~~~eV~DL~FS-~dgk~lasig~d-~~~VW~~~~g~~-~a  221 (398)
T KOG0771|consen  148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEI--AHHAEVKDLDFS-PDGKFLASIGAD-SARVWSVNTGAA-LA  221 (398)
T ss_pred             eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhH--hhcCccccceeC-CCCcEEEEecCC-ceEEEEeccCch-hh
Confidence            5799999 99999999999999999987766655554  788999999998 799999999999 999999999743 11


Q ss_pred             ccccCcceeEeccCCCeEEEEEecCC---CEEEEEe--CCCcEEEEECCCCcE-----EEEEccccCCCeEEEEEcCCCC
Q 004969          537 GMHYGAGTVTFDEFDQLTSVHVNSMD---ELFLASG--YSKNIALYDINSGRR-----LQVFADMHKEHINVVKFSNHSP  606 (721)
Q Consensus       537 ~~~~~~~~~~~~~~~~V~sv~~sp~~---~~lls~g--~Dg~IrlWDl~s~~~-----v~~l~~~h~~~V~sI~fsPdg~  606 (721)
                      ....      +........+.|..++   ..++++.  ..+.|+.||+...+.     .++... ....|++++.+++| 
T Consensus       222 ~~t~------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~-~~~siSsl~VS~dG-  293 (398)
T KOG0771|consen  222 RKTP------FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIK-RFKSISSLAVSDDG-  293 (398)
T ss_pred             hcCC------cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhh-ccCcceeEEEcCCC-
Confidence            1111      1122234555565444   3333333  356788877764322     111111 34579999999999 


Q ss_pred             cEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004969          607 SIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG  668 (721)
Q Consensus       607 ~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g  668 (721)
                      ++++.|+.||.|-|++..+-+.. .+.-+.|...+ .+.|+||.+++++.+.+..+.|..+..
T Consensus       294 kf~AlGT~dGsVai~~~~~lq~~-~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  294 KFLALGTMDGSVAIYDAKSLQRL-QYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             cEEEEeccCCcEEEEEeceeeee-EeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            89999999999999999886443 23345666766 899999999999999999999988774

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.41  E-value=1.3e-11  Score=127.06  Aligned_cols=202  Identities=14%  Similarity=0.145  Sum_probs=159.4

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe---EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcC-C
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN---IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIR-H  530 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~---~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~-~  530 (721)
                      .|+|.+|++ +...+|.+.....|.||.....+   ..+++.  .|...|++|+|. +..+.|++|+.|..-.+|... .
T Consensus        12 pitchAwn~-drt~iAv~~~~~evhiy~~~~~~~w~~~htls--~Hd~~vtgvdWa-p~snrIvtcs~drnayVw~~~~~   87 (361)
T KOG1523|consen   12 PITCHAWNS-DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLS--EHDKIVTGVDWA-PKSNRIVTCSHDRNAYVWTQPSG   87 (361)
T ss_pred             ceeeeeecC-CCceEEeccCCceEEEEEecCCCCceeceehh--hhCcceeEEeec-CCCCceeEccCCCCccccccCCC
Confidence            589999999 99999999999999999987655   445555  899999999998 677899999999999999984 3


Q ss_pred             CCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEE---EEEccccCCCeEEEEEcCCCCc
Q 004969          531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRL---QVFADMHKEHINVVKFSNHSPS  607 (721)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v---~~l~~~h~~~V~sI~fsPdg~~  607 (721)
                      +.-       ....+...+...+++|.|+|..+.|++|+....|.+|-.+....=   +.++..+.+.|.+++|+|++ -
T Consensus        88 ~~W-------kptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn-V  159 (361)
T KOG1523|consen   88 GTW-------KPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN-V  159 (361)
T ss_pred             Cee-------ccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc-c
Confidence            322       223455667788999999999999999999999999988754321   12222377889999999998 7


Q ss_pred             EEEEEECCCcEEEEECC-----CCC-------ce----eEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004969          608 IFATSSFDQDVKLWDLR-----QKP-------IQ----PCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG  668 (721)
Q Consensus       608 lLaSgs~DgtIrIWDlr-----s~~-------~~----~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g  668 (721)
                      ++++|+.|+.+|||..-     ...       ..    .+.+.....+++ .+.|+|+|..|+-.+.|..+.+=|-.+
T Consensus       160 LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~  237 (361)
T KOG1523|consen  160 LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAG  237 (361)
T ss_pred             eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCC
Confidence            99999999999999642     110       00    112233445666 899999999999999999999988764

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.41  E-value=1.9e-11  Score=139.06  Aligned_cols=214  Identities=19%  Similarity=0.202  Sum_probs=153.3

Q ss_pred             CCeEEEEECCCC-eEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCe
Q 004969          475 DGEIVVVNHENE-NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQL  553 (721)
Q Consensus       475 DG~I~IWdl~tg-~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V  553 (721)
                      ++.+.||++... .....+   .-...|++++|+|.++.+++.|..+|.|-+||++.+....   ........-.|..++
T Consensus       221 ~~~~~vW~~~~p~~Pe~~~---~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~---~s~ls~~~~sh~~~v  294 (555)
T KOG1587|consen  221 DGVLLVWSLKNPNTPELVL---ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP---PSGLSALEVSHSEPV  294 (555)
T ss_pred             CceEEEEecCCCCCceEEE---ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC---CcccccccccCCcCe
Confidence            358999999866 333344   3357899999999999999999999999999999866522   111223334567788


Q ss_pred             EEEEEecCCC--EEEEEeCCCcEEEEECCCCcE----------E-----------------------------------E
Q 004969          554 TSVHVNSMDE--LFLASGYSKNIALYDINSGRR----------L-----------------------------------Q  586 (721)
Q Consensus       554 ~sv~~sp~~~--~lls~g~Dg~IrlWDl~s~~~----------v-----------------------------------~  586 (721)
                      +.+.|...-.  .|++++.||.|..|+++.-..          .                                   +
T Consensus       295 ~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~  374 (555)
T KOG1587|consen  295 TAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYK  374 (555)
T ss_pred             EEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEE
Confidence            8888865544  499999999999998763110          0                                   0


Q ss_pred             --------EE----c-----cccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecC
Q 004969          587 --------VF----A-----DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPD  648 (721)
Q Consensus       587 --------~l----~-----~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpd  648 (721)
                              ..    +     ..|.++|+++.++|-++.+|++++ |.+++||..... ..|++.+..+...+ .++|||.
T Consensus       375 ~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~-~~Pl~~~~~~~~~v~~vaWSpt  452 (555)
T KOG1587|consen  375 GCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVI-ASPLLSLDSSPDYVTDVAWSPT  452 (555)
T ss_pred             EeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCC-CCcchhhhhccceeeeeEEcCc
Confidence                    00    0     126778999999999976777766 999999998732 24566666666645 8999996


Q ss_pred             C-CEEEEEeCCCcEEEEEcCCCccccc------ccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          649 D-HYLLGKGSGTSMFVQSLRGDPFRDF------NMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       649 g-~~Lasgs~Dg~I~VWDl~g~~l~~~------~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      . ..++++..||.+.+||+..+...+.      ......+.|++.+       .+||.|+..
T Consensus       453 rpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g-------~~lavGd~~  507 (555)
T KOG1587|consen  453 RPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNG-------KLLAVGDAN  507 (555)
T ss_pred             CceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCC-------cEEEEecCC
Confidence            6 4667778899999999984432222      2345557788888       889998887

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.39  E-value=1.4e-11  Score=138.71  Aligned_cols=209  Identities=13%  Similarity=0.073  Sum_probs=138.7

Q ss_pred             CeEEEEEeCCCCCEEEEEECC---CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEe-CCCeEEEE--Ec
Q 004969          455 RPRQFEYHPSISCLMVFGTLD---GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS-DNGSLKLY--DI  528 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~D---G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs-~DGtVrIW--Di  528 (721)
                      .+.+..|+| +++.++.++.+   ..|++||+.+++........+|   ...++|+ ++++.|+.++ .+|.+.||  |+
T Consensus       205 ~v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wS-PDG~~La~~~~~~g~~~Iy~~d~  279 (429)
T PRK01742        205 PLMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFS-PDGSRLAFASSKDGVLNIYVMGA  279 (429)
T ss_pred             ccccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeEC-CCCCEEEEEEecCCcEEEEEEEC
Confidence            478899999 89989887654   4799999988765333222233   3468998 6888777654 68877766  44


Q ss_pred             CCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCC-cEEEEEccccCCCeEEEEEcCCCC
Q 004969          529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSG-RRLQVFADMHKEHINVVKFSNHSP  606 (721)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~-~~v~~l~~~h~~~V~sI~fsPdg~  606 (721)
                      .++..  ..+        ..+...+....|+|++..++.++ .++...||++... .....+ . +..  ....|+|+| 
T Consensus       280 ~~~~~--~~l--------t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~-~~~--~~~~~SpDG-  344 (429)
T PRK01742        280 NGGTP--SQL--------TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-G-GRG--YSAQISADG-  344 (429)
T ss_pred             CCCCe--Eee--------ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-c-CCC--CCccCCCCC-
Confidence            44322  111        11233467899999999888766 4788888876532 222233 2 433  457899999 


Q ss_pred             cEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEc---CCCc---ccccccCeEE
Q 004969          607 SIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSL---RGDP---FRDFNMSILA  680 (721)
Q Consensus       607 ~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl---~g~~---l~~~~~~V~~  680 (721)
                      ..++.++.++ +.+||+.++....+.  .. ....++.|+|||++|+.++.++.+.+|.+   .|..   +..+.+.+..
T Consensus       345 ~~ia~~~~~~-i~~~Dl~~g~~~~lt--~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~  420 (429)
T PRK01742        345 KTLVMINGDN-VVKQDLTSGSTEVLS--ST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKF  420 (429)
T ss_pred             CEEEEEcCCC-EEEEECCCCCeEEec--CC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCC
Confidence            6777776665 555999887643222  11 11225789999999999998998877764   4554   3344566777


Q ss_pred             EEECCCC
Q 004969          681 AYTRPSS  687 (721)
Q Consensus       681 v~fsP~~  687 (721)
                      .+|||-.
T Consensus       421 p~wsp~~  427 (429)
T PRK01742        421 PAWSPYL  427 (429)
T ss_pred             cccCCCC
Confidence            8888853

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.39  E-value=5.7e-12  Score=136.34  Aligned_cols=202  Identities=14%  Similarity=0.211  Sum_probs=153.8

Q ss_pred             CCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCccee
Q 004969          466 SCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTV  545 (721)
Q Consensus       466 g~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~  545 (721)
                      ...++.++.||.+.|.+- .|+..+.+.  +|.++|.+-.|+ ++|.-|+++|.||.|++|.-.+.-.          ..
T Consensus        75 ~d~~~i~s~DGkf~il~k-~~rVE~sv~--AH~~A~~~gRW~-~dGtgLlt~GEDG~iKiWSrsGMLR----------St  140 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILNK-SARVERSIS--AHAAAISSGRWS-PDGAGLLTAGEDGVIKIWSRSGMLR----------ST  140 (737)
T ss_pred             cceEEEEcCCceEEEecc-cchhhhhhh--hhhhhhhhcccC-CCCceeeeecCCceEEEEeccchHH----------HH
Confidence            356788889999999884 466666666  899999999998 7999999999999999999776322          11


Q ss_pred             EeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCC
Q 004969          546 TFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQ  625 (721)
Q Consensus       546 ~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs  625 (721)
                      ..+...+|.|++|.|+...++.+.. +.+.|=-+.....+...+. |.+-|.++.|+|.. +++++|+.|-..+|||-..
T Consensus       141 l~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkA-HDGiiL~~~W~~~s-~lI~sgGED~kfKvWD~~G  217 (737)
T KOG1524|consen  141 VVQNEESIRCARWAPNSNSIVFCQG-GHISIKPLAANSKIIRWRA-HDGLVLSLSWSTQS-NIIASGGEDFRFKIWDAQG  217 (737)
T ss_pred             HhhcCceeEEEEECCCCCceEEecC-CeEEEeecccccceeEEec-cCcEEEEeecCccc-cceeecCCceeEEeecccC
Confidence            2234467999999999888777653 5677777776666666775 99999999999998 8999999999999999875


Q ss_pred             CCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCcccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          626 KPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       626 ~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                         .+++.-..|..++ +++|.|+ ..++.++ -+++++=.       +-.++|..++|+|+|       ..++.|...
T Consensus       218 ---~~Lf~S~~~ey~ITSva~npd-~~~~v~S-~nt~R~~~-------p~~GSifnlsWS~DG-------TQ~a~gt~~  277 (737)
T KOG1524|consen  218 ---ANLFTSAAEEYAITSVAFNPE-KDYLLWS-YNTARFSS-------PRVGSIFNLSWSADG-------TQATCGTST  277 (737)
T ss_pred             ---cccccCChhccceeeeeeccc-cceeeee-eeeeeecC-------CCccceEEEEEcCCC-------ceeeccccC
Confidence               3366666666666 9999999 4444454 34444211       224689999999999       555555443

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.39  E-value=5e-12  Score=138.45  Aligned_cols=197  Identities=15%  Similarity=0.255  Sum_probs=153.4

Q ss_pred             CccCeEEEEEeCCCCCEEEEEECC---CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEc
Q 004969          452 RSFRPRQFEYHPSISCLMVFGTLD---GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDI  528 (721)
Q Consensus       452 ~~~~V~~lafsP~dg~~LasGs~D---G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi  528 (721)
                      +...|+++.||. .|.+|++...+   ..|.|.++........++  ...+.|.++.|+|. ..+|+.++. ..|+|||+
T Consensus       520 ~~k~i~~vtWHr-kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~--kskG~vq~v~FHPs-~p~lfVaTq-~~vRiYdL  594 (733)
T KOG0650|consen  520 HPKSIRQVTWHR-KGDYLATVMPDSGNKSVLIHQLSKRKSQSPFR--KSKGLVQRVKFHPS-KPYLFVATQ-RSVRIYDL  594 (733)
T ss_pred             cCCccceeeeec-CCceEEEeccCCCcceEEEEecccccccCchh--hcCCceeEEEecCC-CceEEEEec-cceEEEeh
Confidence            334689999999 99999997664   478888988766554443  44578999999954 455555554 48999999


Q ss_pred             CCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC-CcEEEEEccccCCCeEEEEEcCCCCc
Q 004969          529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINS-GRRLQVFADMHKEHINVVKFSNHSPS  607 (721)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s-~~~v~~l~~~h~~~V~sI~fsPdg~~  607 (721)
                      ..... ++.+...        ...|.++++||.|+.++.++.|+.+..+|+.- .++.+++.. |...+++|+|++.- .
T Consensus       595 ~kqel-vKkL~tg--------~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~-H~~avr~Va~H~ry-P  663 (733)
T KOG0650|consen  595 SKQEL-VKKLLTG--------SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRL-HEKAVRSVAFHKRY-P  663 (733)
T ss_pred             hHHHH-HHHHhcC--------CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhh-hhhhhhhhhhcccc-c
Confidence            87433 2222211        13468899999999999999999999999985 466777776 99999999999988 5


Q ss_pred             EEEEEECCCcEEEEEC-------CCCCceeEEEecCCCCe----E-EEEEecCCCEEEEEeCCCcEEEE
Q 004969          608 IFATSSFDQDVKLWDL-------RQKPIQPCYTASSSKGN----V-MVCFSPDDHYLLGKGSGTSMFVQ  664 (721)
Q Consensus       608 lLaSgs~DgtIrIWDl-------rs~~~~~~~~~~~~~~~----v-sl~fSpdg~~Lasgs~Dg~I~VW  664 (721)
                      +|++|+.||++.||--       .+....++..+.+|...    + .+.|+|...||++++.||+|++|
T Consensus       664 Lfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  664 LFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             eeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            9999999999999853       23345677777887655    3 67899999999999999999998

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.39  E-value=2.3e-12  Score=137.63  Aligned_cols=243  Identities=17%  Similarity=0.205  Sum_probs=175.1

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecC------------------------------------CCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSF------------------------------------GAM  498 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~------------------------------------~H~  498 (721)
                      -+..+.|+. +|.+++.|+..|.|.-+|+.+++....+...                                    .-.
T Consensus       131 GPY~~~ytr-nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~  209 (545)
T KOG1272|consen  131 GPYHLDYTR-NGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRH  209 (545)
T ss_pred             CCeeeeecC-CccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhc
Confidence            367788888 8999999999999999998887766554321                                    012


Q ss_pred             CCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 004969          499 NSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYD  578 (721)
Q Consensus       499 ~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWD  578 (721)
                      ..|..+.|. +.--+|++++..|.++--|+.+|+.. ..+.        ...+.+..++-+|-+..+-+|...|+|.+|.
T Consensus       210 ~~v~rLeFL-PyHfLL~~~~~~G~L~Y~DVS~GklV-a~~~--------t~~G~~~vm~qNP~NaVih~GhsnGtVSlWS  279 (545)
T KOG1272|consen  210 IRVARLEFL-PYHFLLVAASEAGFLKYQDVSTGKLV-ASIR--------TGAGRTDVMKQNPYNAVIHLGHSNGTVSLWS  279 (545)
T ss_pred             Cchhhhccc-chhheeeecccCCceEEEeechhhhh-HHHH--------ccCCccchhhcCCccceEEEcCCCceEEecC
Confidence            356667776 44567888888899998899887652 1111        1224567778888888899999999999999


Q ss_pred             CCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCC
Q 004969          579 INSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG  658 (721)
Q Consensus       579 l~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D  658 (721)
                      ..+.+++..+.. |.++|.+|++.+.| ++++|.+.|..++|||+|+-..  ..+.........+++|..|  +++.+..
T Consensus       280 P~skePLvKiLc-H~g~V~siAv~~~G-~YMaTtG~Dr~~kIWDlR~~~q--l~t~~tp~~a~~ls~Sqkg--lLA~~~G  353 (545)
T KOG1272|consen  280 PNSKEPLVKILC-HRGPVSSIAVDRGG-RYMATTGLDRKVKIWDLRNFYQ--LHTYRTPHPASNLSLSQKG--LLALSYG  353 (545)
T ss_pred             CCCcchHHHHHh-cCCCcceEEECCCC-cEEeecccccceeEeeeccccc--cceeecCCCcccccccccc--ceeeecC
Confidence            999999888776 99999999999999 8999999999999999998642  2222222223357777555  4455667


Q ss_pred             CcEEEEEc--CCC-----ccccc--ccCeEEEEECCCCCcccccc-----cEEEEecCCCccccCCcccC
Q 004969          659 TSMFVQSL--RGD-----PFRDF--NMSILAAYTRPSSKSEIVKV-----NLLASTDHCDKECSHGQHSR  714 (721)
Q Consensus       659 g~I~VWDl--~g~-----~l~~~--~~~V~~v~fsP~~~~~~v~v-----~lLASgs~~~ke~s~~~~~~  714 (721)
                      ..+.||.=  .+.     ++..|  .+.|..+.|.|-..+.-++.     .+|+-|++..-.++...+++
T Consensus       354 ~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsGePN~Ds~e~nPf  423 (545)
T KOG1272|consen  354 DHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSGEPNYDSLEDNPF  423 (545)
T ss_pred             CeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCCCCCCcchhccCcc
Confidence            78999962  222     23333  46899999999774333322     78999998855555555543

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.38  E-value=3.7e-11  Score=120.58  Aligned_cols=138  Identities=19%  Similarity=0.366  Sum_probs=101.8

Q ss_pred             CeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe--CCCcEEEEECCCCcEEEEEccccCCCeEE
Q 004969          521 GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG--YSKNIALYDINSGRRLQVFADMHKEHINV  598 (721)
Q Consensus       521 GtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g--~Dg~IrlWDl~s~~~v~~l~~~h~~~V~s  598 (721)
                      |...+|-++....       ....+.+...++|.+++|+|++..|++..  .++.|.+||++ ++.+..+.   ...++.
T Consensus        37 ~~~~l~~~~~~~~-------~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~---~~~~n~  105 (194)
T PF08662_consen   37 GEFELFYLNEKNI-------PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG---TQPRNT  105 (194)
T ss_pred             eeEEEEEEecCCC-------ccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec---CCCceE
Confidence            3455666544322       22344455556799999999999987664  46799999997 77777764   467789


Q ss_pred             EEEcCCCCcEEEEEECC---CcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeC------CCcEEEEEcCCC
Q 004969          599 VKFSNHSPSIFATSSFD---QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGS------GTSMFVQSLRGD  669 (721)
Q Consensus       599 I~fsPdg~~lLaSgs~D---gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~------Dg~I~VWDl~g~  669 (721)
                      |.|+|+| +++++|+.+   |.|.+||+++.+.  +... .+...+.++|+|||+++++++.      |+.++||+..|+
T Consensus       106 i~wsP~G-~~l~~~g~~n~~G~l~~wd~~~~~~--i~~~-~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  106 ISWSPDG-RFLVLAGFGNLNGDLEFWDVRKKKK--ISTF-EHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             EEECCCC-CEEEEEEccCCCcEEEEEECCCCEE--eecc-ccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence            9999999 788887654   6799999997643  4443 3445668999999999998864      788999999987


Q ss_pred             cccc
Q 004969          670 PFRD  673 (721)
Q Consensus       670 ~l~~  673 (721)
                      .+..
T Consensus       182 ~l~~  185 (194)
T PF08662_consen  182 LLYK  185 (194)
T ss_pred             EeEe
Confidence            6543

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.38  E-value=9.9e-11  Score=122.55  Aligned_cols=228  Identities=19%  Similarity=0.219  Sum_probs=162.7

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCC--eEEEEEcCCCCC
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG--SLKLYDIRHMPP  533 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DG--tVrIWDi~~~~~  533 (721)
                      +..+.|+. +...|..|+.|| -++|+.+.-.......  ...-.|--+-|+   ..++|..+.+.  .+++.+++....
T Consensus         8 i~~~~~Nq-d~~~lsvGs~~G-yk~~~~~~~~k~~~~~--~~~~~IvEmLFS---SSLvaiV~~~qpr~Lkv~~~Kk~~~   80 (391)
T KOG2110|consen    8 INFIGFNQ-DSTLLSVGSKDG-YKIFSCSPFEKCFSKD--TEGVSIVEMLFS---SSLVAIVSIKQPRKLKVVHFKKKTT   80 (391)
T ss_pred             eeeeeecc-ceeEEEccCCCc-eeEEecCchHHhhccc--CCCeEEEEeecc---cceeEEEecCCCceEEEEEcccCce
Confidence            55666887 889999999999 6888876433211111  112345555554   45666555543  488888876332


Q ss_pred             cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccc--cCCCeEEEEEcCCCCcEEEE
Q 004969          534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADM--HKEHINVVKFSNHSPSIFAT  611 (721)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~--h~~~V~sI~fsPdg~~lLaS  611 (721)
                                ........+|.+|.++  -+.++++-.+. |+|||+++.+.++++...  +...+.++++++.+ .++|-
T Consensus        81 ----------ICe~~fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n-~ylAy  146 (391)
T KOG2110|consen   81 ----------ICEIFFPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNAN-CYLAY  146 (391)
T ss_pred             ----------EEEEecCCceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCC-ceEEe
Confidence                      3334445678999984  45666666544 999999999999888742  55567777777766 46654


Q ss_pred             E-E-CCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcE-EEEEcC-CCcccccc-----cCeEEE
Q 004969          612 S-S-FDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSM-FVQSLR-GDPFRDFN-----MSILAA  681 (721)
Q Consensus       612 g-s-~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I-~VWDl~-g~~l~~~~-----~~V~~v  681 (721)
                      - + ..|.|.+||+.+-  +++..+..|.+.+ +++|+++|.+|||++..|+| +|+.+. |+.+..|.     ..|.++
T Consensus       147 p~s~t~GdV~l~d~~nl--~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL  224 (391)
T KOG2110|consen  147 PGSTTSGDVVLFDTINL--QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSL  224 (391)
T ss_pred             cCCCCCceEEEEEcccc--eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEE
Confidence            3 2 3588999999875  5577778999999 89999999999999999975 999997 66666662     368889


Q ss_pred             EECCCCCcccccccEEEEecCCCccccCCccc
Q 004969          682 YTRPSSKSEIVKVNLLASTDHCDKECSHGQHS  713 (721)
Q Consensus       682 ~fsP~~~~~~v~v~lLASgs~~~ke~s~~~~~  713 (721)
                      +|||++       ++|+..|.+...+.+.+..
T Consensus       225 ~Fs~ds-------~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  225 SFSPDS-------QFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             EECCCC-------CeEEEecCCCeEEEEEecc
Confidence            999999       8888888875665555544

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.35  E-value=1.4e-11  Score=128.89  Aligned_cols=189  Identities=12%  Similarity=0.145  Sum_probs=139.2

Q ss_pred             CCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcE
Q 004969          495 FGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNI  574 (721)
Q Consensus       495 ~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~I  574 (721)
                      .+|.+.|.++.|+ .++.+|++|+.|..+++|.++..-  ........+...-.|...|.+++|+..+..+++|+.+++|
T Consensus        53 ~~H~GCiNAlqFS-~N~~~L~SGGDD~~~~~W~~de~~--~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V  129 (609)
T KOG4227|consen   53 REHTGCINALQFS-HNDRFLASGGDDMHGRVWNVDELM--VRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV  129 (609)
T ss_pred             hhhccccceeeec-cCCeEEeecCCcceeeeechHHHH--hhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence            3899999999998 779999999999999999987521  1111111112222344679999999989999999999999


Q ss_pred             EEEECCCCcEEEEEcc-ccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCC-ceeEEEecCCCCe-EEEEEecCC-C
Q 004969          575 ALYDINSGRRLQVFAD-MHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKP-IQPCYTASSSKGN-VMVCFSPDD-H  650 (721)
Q Consensus       575 rlWDl~s~~~v~~l~~-~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~-~~~~~~~~~~~~~-vsl~fSpdg-~  650 (721)
                      .+.|+.+.+.+..+.. ...+.|+.+..+|.. +++++.+.++.|.+||.|..+ ....+........ .++-|+|.. .
T Consensus       130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~  208 (609)
T KOG4227|consen  130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPA  208 (609)
T ss_pred             EeeecccceeeeeecccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCce
Confidence            9999999999988872 123489999999997 899999999999999999864 2222222222222 388999955 5


Q ss_pred             EEEEEeCCCcEEEEEcCCC--cc------ccccc---CeEEEEECCCC
Q 004969          651 YLLGKGSGTSMFVQSLRGD--PF------RDFNM---SILAAYTRPSS  687 (721)
Q Consensus       651 ~Lasgs~Dg~I~VWDl~g~--~l------~~~~~---~V~~v~fsP~~  687 (721)
                      .|++.+..+.+-+||++..  ++      ++...   .-+++.|+|.|
T Consensus       209 Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G  256 (609)
T KOG4227|consen  209 LILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSG  256 (609)
T ss_pred             eEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCC
Confidence            6778888999999999832  21      12211   23567888887

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.35  E-value=6e-12  Score=132.75  Aligned_cols=161  Identities=18%  Similarity=0.274  Sum_probs=129.3

Q ss_pred             CCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeE-----eccCCCeEEEEEecCCCEEEEEeCCC
Q 004969          498 MNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVT-----FDEFDQLTSVHVNSMDELFLASGYSK  572 (721)
Q Consensus       498 ~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~-----~~~~~~V~sv~~sp~~~~lls~g~Dg  572 (721)
                      ..+|..+.|.+...++++||+.|..|++|-+.........     ..+.     -.|...|+.+.|+|+|+.+++|+++|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~-----~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g   87 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD-----MKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGG   87 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc-----eeEEEeecccCCcceeEEEEEcCCcCeeeecCCCc
Confidence            3689999998666669999999999999999876552110     1222     24667899999999999999999999


Q ss_pred             cEEEEECC--------C--------CcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecC
Q 004969          573 NIALYDIN--------S--------GRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASS  636 (721)
Q Consensus       573 ~IrlWDl~--------s--------~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~  636 (721)
                      .|.+|-..        +        ....+.+.+ |...|..++|+|++ .++++|+.|.++++||+..+..  ...+..
T Consensus        88 ~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~-h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l--~~~~~d  163 (434)
T KOG1009|consen   88 EVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRG-HRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQL--LAILDD  163 (434)
T ss_pred             eEEEEEecCcCCccccchhhhCccceEEEEEecc-cccchhhhhccCCC-ceeeeeeccceEEEEEecccee--Eeeccc
Confidence            99999766        2        112334445 99999999999999 8999999999999999999954  555677


Q ss_pred             CCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          637 SKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       637 ~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                      |...+ .++|.|-++|+++-+.|...+++++.
T Consensus       164 h~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~  195 (434)
T KOG1009|consen  164 HEHYVQGVAWDPLNQYVASKSSDRHPEGFSAK  195 (434)
T ss_pred             cccccceeecchhhhhhhhhccCcccceeeee
Confidence            77777 89999999999998888876666653

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.35  E-value=2.5e-10  Score=123.63  Aligned_cols=211  Identities=11%  Similarity=0.157  Sum_probs=137.1

Q ss_pred             EEEEECCCeEEEEECCC-Ce--EEEEeecCCCCCCeEEEEEeeCCCCEEEEE-eCCCeEEEEEcCCCCCcccccccCcce
Q 004969          469 MVFGTLDGEIVVVNHEN-EN--IVSYIPSFGAMNSVLGLCWLKKYPSKLIAG-SDNGSLKLYDIRHMPPSIRGMHYGAGT  544 (721)
Q Consensus       469 LasGs~DG~I~IWdl~t-g~--~i~~l~~~~H~~~V~sl~fsp~d~~~LaSg-s~DGtVrIWDi~~~~~~~~~~~~~~~~  544 (721)
                      +++...++.|.+|++.+ |+  .+..++   +.+....++++ +++++|+++ ..++.|.+|++..... +...      
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~---~~~~~~~l~~s-pd~~~lyv~~~~~~~i~~~~~~~~g~-l~~~------   73 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVD---VPGQVQPMVIS-PDKRHLYVGVRPEFRVLSYRIADDGA-LTFA------   73 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEe---cCCCCccEEEC-CCCCEEEEEECCCCcEEEEEECCCCc-eEEe------
Confidence            44557789999999964 43  344443   33556778888 677877665 4588999999973111 1100      


Q ss_pred             eEeccCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCC-C---cEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEE
Q 004969          545 VTFDEFDQLTSVHVNSMDELFLASGY-SKNIALYDINS-G---RRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVK  619 (721)
Q Consensus       545 ~~~~~~~~V~sv~~sp~~~~lls~g~-Dg~IrlWDl~s-~---~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIr  619 (721)
                      ...........++++|+++.+++++. ++.|.+||+.+ +   +.+..+.  +......++++|++..++++...++.|.
T Consensus        74 ~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~--~~~~~~~~~~~p~g~~l~v~~~~~~~v~  151 (330)
T PRK11028         74 AESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE--GLEGCHSANIDPDNRTLWVPCLKEDRIR  151 (330)
T ss_pred             eeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc--CCCcccEeEeCCCCCEEEEeeCCCCEEE
Confidence            01111224578999999999998875 78999999974 3   2333333  3345677899999955556667789999


Q ss_pred             EEECCCC-Ccee----EEEecCCCCeEEEEEecCCCEEEEEeC-CCcEEEEEcCC--Cccccc------------ccCeE
Q 004969          620 LWDLRQK-PIQP----CYTASSSKGNVMVCFSPDDHYLLGKGS-GTSMFVQSLRG--DPFRDF------------NMSIL  679 (721)
Q Consensus       620 IWDlrs~-~~~~----~~~~~~~~~~vsl~fSpdg~~Lasgs~-Dg~I~VWDl~g--~~l~~~------------~~~V~  679 (721)
                      +||+.+. ....    ........++..++|+|+|++++++.. ++.|.+|++..  ..+...            .....
T Consensus       152 v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  231 (330)
T PRK11028        152 LFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAA  231 (330)
T ss_pred             EEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccce
Confidence            9999763 2211    122233444557899999999988876 89999999962  122111            01123


Q ss_pred             EEEECCCCCcccc
Q 004969          680 AAYTRPSSKSEIV  692 (721)
Q Consensus       680 ~v~fsP~~~~~~v  692 (721)
                      .+.++|+++..++
T Consensus       232 ~i~~~pdg~~lyv  244 (330)
T PRK11028        232 DIHITPDGRHLYA  244 (330)
T ss_pred             eEEECCCCCEEEE
Confidence            5789999954433

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.34  E-value=1.4e-11  Score=123.64  Aligned_cols=237  Identities=15%  Similarity=0.179  Sum_probs=165.0

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC-
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP-  533 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~-  533 (721)
                      .|+++.|-. + .++.+|..-|.|++|++++.+....+.. .|...|+.+.-.|  ++.+.+-+.|+.+.+|++..... 
T Consensus        16 ~v~s~~fqa-~-~rL~sg~~~G~V~~w~lqt~r~~~~~r~-~g~~~it~lq~~p--~d~l~tqgRd~~L~lw~ia~s~~i   90 (323)
T KOG0322|consen   16 SVTSVLFQA-N-ERLMSGLSVGIVKMWVLQTERDLPLIRL-FGRLFITNLQSIP--NDSLDTQGRDPLLILWTIAYSAFI   90 (323)
T ss_pred             hheehhhcc-c-hhhhcccccceEEEEEeecCccchhhhh-hccceeeceeecC--CcchhhcCCCceEEEEEccCcceE
Confidence            478888877 4 4599999999999999999888877764 4567899888763  37789999999999999986221 


Q ss_pred             -------------ccccccc------------------------CcceeEec------cCCCeEEEEEecC--CCEEEEE
Q 004969          534 -------------SIRGMHY------------------------GAGTVTFD------EFDQLTSVHVNSM--DELFLAS  568 (721)
Q Consensus       534 -------------~~~~~~~------------------------~~~~~~~~------~~~~V~sv~~sp~--~~~lls~  568 (721)
                                   ......+                        ....+...      ..+.+++..+.-.  ...++.+
T Consensus        91 ~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~llla  170 (323)
T KOG0322|consen   91 SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLA  170 (323)
T ss_pred             EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEE
Confidence                         0000000                        00000110      1233555554221  2334444


Q ss_pred             e-CCCcEEEEECCCCcEEEEEc---------cccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCC--Ccee--EEEe
Q 004969          569 G-YSKNIALYDINSGRRLQVFA---------DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQK--PIQP--CYTA  634 (721)
Q Consensus       569 g-~Dg~IrlWDl~s~~~v~~l~---------~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~--~~~~--~~~~  634 (721)
                      | .+|.+.+||+.++..+..+.         ..|..+|.++.|.+.. ..=++|+.+..+..|.+...  .+..  ..++
T Consensus       171 GyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~-~rGisgga~dkl~~~Sl~~s~gslq~~~e~~l  249 (323)
T KOG0322|consen  171 GYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC-DRGISGGADDKLVMYSLNHSTGSLQIRKEITL  249 (323)
T ss_pred             eccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh-cCCcCCCccccceeeeeccccCcccccceEEe
Confidence            4 68999999999985443332         1388999999998765 45567788888889988643  2211  1122


Q ss_pred             cCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC-CCc---ccccccCeEEEEECCCCCcccccccEEEEecCCCc
Q 004969          635 SSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR-GDP---FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDK  705 (721)
Q Consensus       635 ~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~---l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~~k  705 (721)
                       .+.+...+..-||++.+|+++.|+.|+||..+ .+|   ++-|...|++++|+|+.       +++|.+|..+.
T Consensus       250 -knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~-------~lmAaaskD~r  316 (323)
T KOG0322|consen  250 -KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDC-------ELMAAASKDAR  316 (323)
T ss_pred             -cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCC-------chhhhccCCce
Confidence             23333367889999999999999999999987 444   56678899999999998       99999998743

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=3e-10  Score=127.84  Aligned_cols=211  Identities=13%  Similarity=0.025  Sum_probs=139.0

Q ss_pred             CeEEEEEeCCCCCEEEEEE---CCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEE-eCCC--eEEEEEc
Q 004969          455 RPRQFEYHPSISCLMVFGT---LDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAG-SDNG--SLKLYDI  528 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs---~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSg-s~DG--tVrIWDi  528 (721)
                      .+.+.+|+| ||+.|+..+   .+..|.+|++.+|+........+   .+....|+ ++++.|+.. +.+|  .|.+||+
T Consensus       200 ~~~~p~wSP-DG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~---~~~~~~~S-PDG~~La~~~~~~g~~~I~~~d~  274 (429)
T PRK03629        200 PLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR---HNGAPAFS-PDGSKLAFALSKTGSLNLYVMDL  274 (429)
T ss_pred             ceeeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCC---CcCCeEEC-CCCCEEEEEEcCCCCcEEEEEEC
Confidence            478899999 888888654   24579999999886544332223   34568898 677777654 4455  5888999


Q ss_pred             CCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC-Cc--EEEEECCCCcEEEEEccccCCCeEEEEEcCCC
Q 004969          529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS-KN--IALYDINSGRRLQVFADMHKEHINVVKFSNHS  605 (721)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D-g~--IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg  605 (721)
                      .++...  .+        ..+...+....|+|++..++.++.+ +.  |.++|+.+++.. .+.. +........|+|+|
T Consensus       275 ~tg~~~--~l--------t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~-~~~~~~~~~~SpDG  342 (429)
T PRK03629        275 ASGQIR--QV--------TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW-EGSQNQDADVSSDG  342 (429)
T ss_pred             CCCCEE--Ec--------cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec-CCCCccCEEECCCC
Confidence            875431  11        1122346788999999998877753 44  555577766543 3332 34456678999999


Q ss_pred             CcEEEEEEC-C--CcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCc---EEEEEcCCCc---cccccc
Q 004969          606 PSIFATSSF-D--QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTS---MFVQSLRGDP---FRDFNM  676 (721)
Q Consensus       606 ~~lLaSgs~-D--gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~---I~VWDl~g~~---l~~~~~  676 (721)
                       ..++..+. +  ..|.+||+.++....+.   .........|+|||++|+.++.++.   ++++++.|..   +..+.+
T Consensus       343 -~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt---~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~  418 (429)
T PRK03629        343 -KFMVMVSSNGGQQHIAKQDLATGGVQVLT---DTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDG  418 (429)
T ss_pred             -CEEEEEEccCCCceEEEEECCCCCeEEeC---CCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECccCCC
Confidence             55555443 3  35888999887543322   1111225789999999999887764   6788887654   334456


Q ss_pred             CeEEEEECCC
Q 004969          677 SILAAYTRPS  686 (721)
Q Consensus       677 ~V~~v~fsP~  686 (721)
                      .+...+|+|-
T Consensus       419 ~~~~p~Wsp~  428 (429)
T PRK03629        419 QVKFPAWSPY  428 (429)
T ss_pred             CcCCcccCCC
Confidence            6777888873

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.31  E-value=1e-10  Score=131.68  Aligned_cols=201  Identities=13%  Similarity=0.108  Sum_probs=132.2

Q ss_pred             CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC---CeEEEEEcCCCCCcccccccCcceeEeccCC
Q 004969          475 DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN---GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFD  551 (721)
Q Consensus       475 DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D---GtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~  551 (721)
                      +.+|.+||..... ...+.  .|...+.+.+|+ ++++.|+.++.+   ..|.+||+.+++....        ..+  ..
T Consensus       183 ~~~i~i~d~dg~~-~~~lt--~~~~~v~~p~wS-PDG~~la~~s~~~~~~~i~i~dl~tg~~~~l--------~~~--~g  248 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVN--RSSQPLMSPAWS-PDGSKLAYVSFENKKSQLVVHDLRSGARKVV--------ASF--RG  248 (429)
T ss_pred             eEEEEEECCCCCC-ceEec--cCCCccccceEc-CCCCEEEEEEecCCCcEEEEEeCCCCceEEE--------ecC--CC
Confidence            5789999987544 44444  667789999999 688888887654   4799999987653111        011  12


Q ss_pred             CeEEEEEecCCCEEEEEe-CCCcEEE--EECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCc
Q 004969          552 QLTSVHVNSMDELFLASG-YSKNIAL--YDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPI  628 (721)
Q Consensus       552 ~V~sv~~sp~~~~lls~g-~Dg~Irl--WDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~  628 (721)
                      .....+|+|++..++.++ .+|.+.|  ||+.+++. ..+.. +...+....|+|+|..+++++..++..+||++.....
T Consensus       249 ~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~-~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~  326 (429)
T PRK01742        249 HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTS-GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG  326 (429)
T ss_pred             ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-Eeecc-CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            234679999999988875 5776555  56666654 44544 6667889999999944455555678888888754221


Q ss_pred             eeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCccccc--ccCeEEEEECCCCCcccccccEEEEecC
Q 004969          629 QPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDF--NMSILAAYTRPSSKSEIVKVNLLASTDH  702 (721)
Q Consensus       629 ~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~~~--~~~V~~v~fsP~~~~~~v~v~lLASgs~  702 (721)
                      ... .+ .+.. ....|+|||++|+.++.++ +.+||+.+......  ........|+|++       .+|++++.
T Consensus       327 ~~~-~l-~~~~-~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG-------~~i~~~s~  391 (429)
T PRK01742        327 GAS-LV-GGRG-YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFLDESPSISPNG-------IMIIYSST  391 (429)
T ss_pred             CeE-Ee-cCCC-CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCCCCCCceECCCC-------CEEEEEEc
Confidence            111 11 2222 3568999999998887654 66699874332211  1233557899999       66666554

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.29  E-value=5.1e-11  Score=129.40  Aligned_cols=178  Identities=15%  Similarity=0.200  Sum_probs=133.9

Q ss_pred             CCCEEEEEECCCeEEEEECCCCeEEEEeecC--CCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC----ccccc
Q 004969          465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSF--GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP----SIRGM  538 (721)
Q Consensus       465 dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~--~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~----~~~~~  538 (721)
                      .+--+..|-.-|.|.+.|....+..+.+...  -.+..|+++.|.|.+...++.+-.+|.+.+||......    ....+
T Consensus       184 ~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~  263 (636)
T KOG2394|consen  184 KGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQAL  263 (636)
T ss_pred             CCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccccc
Confidence            5566888888999999987653322222211  12478999999988888999999999999998753111    11111


Q ss_pred             cc--------------CcceeEe-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcC
Q 004969          539 HY--------------GAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSN  603 (721)
Q Consensus       539 ~~--------------~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsP  603 (721)
                      ..              ......+ ...+.|...+|+|++.++++.+.||.+||||..+.+.+-.++. .-+...|++|+|
T Consensus       264 k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkS-YFGGLLCvcWSP  342 (636)
T KOG2394|consen  264 KDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKS-YFGGLLCVCWSP  342 (636)
T ss_pred             CCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHh-hccceEEEEEcC
Confidence            10              0111111 1234689999999999999999999999999999888777664 667899999999


Q ss_pred             CCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEe
Q 004969          604 HSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFS  646 (721)
Q Consensus       604 dg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fS  646 (721)
                      || +++++|+.|.-|.||.+...+  .+...++|..+| .++|+
T Consensus       343 DG-KyIvtGGEDDLVtVwSf~erR--VVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  343 DG-KYIVTGGEDDLVTVWSFEERR--VVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             Cc-cEEEecCCcceEEEEEeccce--EEEeccccccceeeEeec
Confidence            99 899999999999999999874  367788999999 68887

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.29  E-value=2.4e-10  Score=126.35  Aligned_cols=198  Identities=11%  Similarity=0.161  Sum_probs=138.7

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEE--------eec---------------------------CCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSY--------IPS---------------------------FGAMN  499 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~--------l~~---------------------------~~H~~  499 (721)
                      .|.|++|+. +|+++|+|+.|..|.+|+.+-...++.        +..                           +....
T Consensus        55 tVycVAys~-dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~  133 (1081)
T KOG1538|consen   55 TVYCVAYAK-DGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSS  133 (1081)
T ss_pred             eEEEEEEcc-CCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhhe
Confidence            589999999 999999999999999998653222211        100                           01123


Q ss_pred             CeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCC-----CEEEEEeCCCcE
Q 004969          500 SVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD-----ELFLASGYSKNI  574 (721)
Q Consensus       500 ~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~-----~~lls~g~Dg~I  574 (721)
                      .|.+.+|. .+|.+++-|-.+|+|.+-+-...........+       ...++|.+++|+|..     +.+++.....++
T Consensus       134 R~~~CsWt-nDGqylalG~~nGTIsiRNk~gEek~~I~Rpg-------g~Nspiwsi~~~p~sg~G~~di~aV~DW~qTL  205 (1081)
T KOG1538|consen  134 RIICCSWT-NDGQYLALGMFNGTISIRNKNGEEKVKIERPG-------GSNSPIWSICWNPSSGEGRNDILAVADWGQTL  205 (1081)
T ss_pred             eEEEeeec-CCCcEEEEeccCceEEeecCCCCcceEEeCCC-------CCCCCceEEEecCCCCCCccceEEEEecccee
Confidence            45566675 78888888888999988765443221111111       123679999999864     456677777888


Q ss_pred             EEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEE
Q 004969          575 ALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLL  653 (721)
Q Consensus       575 rlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~La  653 (721)
                      .+|.+. |+.+..-+. -.-...|+++-|+| .+++.|+.|+.+++|-...   ..+-++.....++ +++..|++++++
T Consensus       206 SFy~Ls-G~~Igk~r~-L~FdP~CisYf~NG-Ey~LiGGsdk~L~~fTR~G---vrLGTvg~~D~WIWtV~~~PNsQ~v~  279 (1081)
T KOG1538|consen  206 SFYQLS-GKQIGKDRA-LNFDPCCISYFTNG-EYILLGGSDKQLSLFTRDG---VRLGTVGEQDSWIWTVQAKPNSQYVV  279 (1081)
T ss_pred             EEEEec-ceeeccccc-CCCCchhheeccCC-cEEEEccCCCceEEEeecC---eEEeeccccceeEEEEEEccCCceEE
Confidence            888776 554443222 34456789999999 6888999999999997543   3344444444565 999999999999


Q ss_pred             EEeCCCcEEEEEcC
Q 004969          654 GKGSGTSMFVQSLR  667 (721)
Q Consensus       654 sgs~Dg~I~VWDl~  667 (721)
                      .|+.||+|--|++-
T Consensus       280 ~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  280 VGCQDGTIACYNLI  293 (1081)
T ss_pred             EEEccCeeehhhhH
Confidence            99999999988864

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.28  E-value=2.4e-10  Score=120.40  Aligned_cols=232  Identities=17%  Similarity=0.207  Sum_probs=170.8

Q ss_pred             CeEEEEEeCCCCCEEEEEE-CCCeEEEEECCCCeEEEEe----ecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcC
Q 004969          455 RPRQFEYHPSISCLMVFGT-LDGEIVVVNHENENIVSYI----PSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIR  529 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs-~DG~I~IWdl~tg~~i~~l----~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~  529 (721)
                      ++++++|.-....-+..+. .|..+....++.+.+...+    ......++|.+++.   ....|++|-.+|.+.+|..+
T Consensus        57 ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~---~dg~Litc~~sG~l~~~~~k  133 (412)
T KOG3881|consen   57 RISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKL---ADGTLITCVSSGNLQVRHDK  133 (412)
T ss_pred             hhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhh---cCCEEEEEecCCcEEEEecc
Confidence            5777888763333344444 6777777777766555443    22345677888875   35688999999999999998


Q ss_pred             CCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEE-EeCC--CcEEEEECCCCcEEEEEccc--------cCCCeEE
Q 004969          530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLA-SGYS--KNIALYDINSGRRLQVFADM--------HKEHINV  598 (721)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls-~g~D--g~IrlWDl~s~~~v~~l~~~--------h~~~V~s  598 (721)
                      .+...      ......+....++..+.-++....|++ ||..  ..+.+||+.+.+.++.-+..        -.-+++.
T Consensus       134 ~~d~h------ss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~td  207 (412)
T KOG3881|consen  134 SGDLH------SSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITD  207 (412)
T ss_pred             CCccc------cccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecc
Confidence            65421      112233334456677777777777777 5666  78999999988766654421        1336778


Q ss_pred             EEEcCCC-CcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCc-----c
Q 004969          599 VKFSNHS-PSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDP-----F  671 (721)
Q Consensus       599 I~fsPdg-~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~-----l  671 (721)
                      +.|-|.. .+.||+++.-+.+|+||++.+ ..|+..+.....++ ++...|+|+++++|..-|.+..||+++..     +
T Consensus       208 i~Fl~g~~~~~fat~T~~hqvR~YDt~~q-RRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~  286 (412)
T KOG3881|consen  208 IRFLEGSPNYKFATITRYHQVRLYDTRHQ-RRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGL  286 (412)
T ss_pred             ceecCCCCCceEEEEecceeEEEecCccc-CcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeecccc
Confidence            9998861 279999999999999999965 46777777666666 89999999999999999999999999443     5


Q ss_pred             cccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          672 RDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       672 ~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      .++.+++.+++.||..       +++|+||..
T Consensus       287 kg~tGsirsih~hp~~-------~~las~GLD  311 (412)
T KOG3881|consen  287 KGITGSIRSIHCHPTH-------PVLASCGLD  311 (412)
T ss_pred             CCccCCcceEEEcCCC-------ceEEeeccc
Confidence            6668899999999999       999999987

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.28  E-value=1.9e-11  Score=131.41  Aligned_cols=233  Identities=15%  Similarity=0.203  Sum_probs=172.3

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCC-CEEEEEeCCCeEEEEEcCCCCCc
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYP-SKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~-~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      |..|.|+. .|..+++|+.|..|.+||+..+.....+.. ||...|..-.|.|..+ ..+++++.||.|++=.+......
T Consensus       145 VntV~FN~-~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S-GH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~  222 (559)
T KOG1334|consen  145 VNTVHFNQ-RGDVLASGSDDLQVVVWDWVSGSPKLSFES-GHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYV  222 (559)
T ss_pred             cceeeecc-cCceeeccCccceEEeehhhccCccccccc-ccccchhhhhccCCCCCcCceeccccCceeeeeeccccce
Confidence            77899999 999999999999999999999988877775 8999999989987654 57899999999999776543321


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCCcEEEEEc--cccCC---CeEEEEEcCCCCcE
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDE-LFLASGYSKNIALYDINSGRRLQVFA--DMHKE---HINVVKFSNHSPSI  608 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~-~lls~g~Dg~IrlWDl~s~~~v~~l~--~~h~~---~V~sI~fsPdg~~l  608 (721)
                            ........|.++|..++.-|... .|+++|.|+.+.-+|++++.+...+.  ..+..   ..++|+.+|..++.
T Consensus       223 ------e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~  296 (559)
T KOG1334|consen  223 ------ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNE  296 (559)
T ss_pred             ------ecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccc
Confidence                  11123345778888899888765 57788899999999999876544433  21333   57789999998889


Q ss_pred             EEEEECCCcEEEEECCCCCcee------------------------EEE-------------------------------
Q 004969          609 FATSSFDQDVKLWDLRQKPIQP------------------------CYT-------------------------------  633 (721)
Q Consensus       609 LaSgs~DgtIrIWDlrs~~~~~------------------------~~~-------------------------------  633 (721)
                      +++|+.|-.+|+||.+.-....                        .+.                               
T Consensus       297 faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~  376 (559)
T KOG1334|consen  297 FAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPS  376 (559)
T ss_pred             cccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCC
Confidence            9999999999999987521100                        000                               


Q ss_pred             ----------ecCCCC--eE-EE-EEecCCCEEEEEeCCCcEEEEEcCCCc-cccc---ccCeEEEEECCCCCccccccc
Q 004969          634 ----------ASSSKG--NV-MV-CFSPDDHYLLGKGSGTSMFVQSLRGDP-FRDF---NMSILAAYTRPSSKSEIVKVN  695 (721)
Q Consensus       634 ----------~~~~~~--~v-sl-~fSpdg~~Lasgs~Dg~I~VWDl~g~~-l~~~---~~~V~~v~fsP~~~~~~v~v~  695 (721)
                                ..+|..  .| .+ -|-|...|+++|+.-|.|.||+-.+.. ++-+   ...|+|+.-||.-       |
T Consensus       377 s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~-------P  449 (559)
T KOG1334|consen  377 SPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHL-------P  449 (559)
T ss_pred             cchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCC-------c
Confidence                      001100  01 11 245666778899999999999987433 2222   3479999999998       9


Q ss_pred             EEEEecCC
Q 004969          696 LLASTDHC  703 (721)
Q Consensus       696 lLASgs~~  703 (721)
                      +|||+|..
T Consensus       450 vLAsSGid  457 (559)
T KOG1334|consen  450 VLASSGID  457 (559)
T ss_pred             hhhccCCc
Confidence            99999987

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.27  E-value=3.6e-11  Score=130.27  Aligned_cols=180  Identities=12%  Similarity=0.149  Sum_probs=132.7

Q ss_pred             CCccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 004969          451 NRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH  530 (721)
Q Consensus       451 ~~~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~  530 (721)
                      .|+.++.|-.|+| +|.-+++++.||.|++|.-. |....++.  ....+|.|++|-|...+.+++.+.  .+.|=-+..
T Consensus       102 AH~~A~~~gRW~~-dGtgLlt~GEDG~iKiWSrs-GMLRStl~--Q~~~~v~c~~W~p~S~~vl~c~g~--h~~IKpL~~  175 (737)
T KOG1524|consen  102 AHAAAISSGRWSP-DGAGLLTAGEDGVIKIWSRS-GMLRSTVV--QNEESIRCARWAPNSNSIVFCQGG--HISIKPLAA  175 (737)
T ss_pred             hhhhhhhhcccCC-CCceeeeecCCceEEEEecc-chHHHHHh--hcCceeEEEEECCCCCceEEecCC--eEEEeeccc
Confidence            3445688889999 99999999999999999954 55544444  334789999999766666666554  344433333


Q ss_pred             CCCcccccccCcceeEec-cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEE
Q 004969          531 MPPSIRGMHYGAGTVTFD-EFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIF  609 (721)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~-~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lL  609 (721)
                                ....+.+. |.+-|.+++|++..+.+++||.|-..++||.. |..+.+-.. |..+|++++|+|+.  .+
T Consensus       176 ----------n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~-~ey~ITSva~npd~--~~  241 (737)
T KOG1524|consen  176 ----------NSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAA-EEYAITSVAFNPEK--DY  241 (737)
T ss_pred             ----------ccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCCh-hccceeeeeecccc--ce
Confidence                      22344443 44568999999999999999999999999976 777766664 99999999999984  67


Q ss_pred             EEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 004969          610 ATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFV  663 (721)
Q Consensus       610 aSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~V  663 (721)
                      +.+|.. +.|+            .-+....+..++||+||..+++|...|.+.+
T Consensus       242 ~v~S~n-t~R~------------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  242 LLWSYN-TARF------------SSPRVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             eeeeee-eeee------------cCCCccceEEEEEcCCCceeeccccCceEEE
Confidence            777643 3441            1122223348999999999999998887653

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.26  E-value=5.7e-10  Score=111.10  Aligned_cols=195  Identities=14%  Similarity=0.216  Sum_probs=136.0

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI  535 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~  535 (721)
                      |.++...|+.+.++.+| .|+.++-||+++|+...+++  ||++.|.++.-- .....++||+.||++|+||.++++...
T Consensus       117 INam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~r--GHtDYvH~vv~R-~~~~qilsG~EDGtvRvWd~kt~k~v~  192 (325)
T KOG0649|consen  117 INAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREYR--GHTDYVHSVVGR-NANGQILSGAEDGTVRVWDTKTQKHVS  192 (325)
T ss_pred             cceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEEc--CCcceeeeeeec-ccCcceeecCCCccEEEEeccccceeE
Confidence            77888899565555555 79999999999999999998  999999999863 456789999999999999999987632


Q ss_pred             c-ccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969          536 R-GMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF  614 (721)
Q Consensus       536 ~-~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~  614 (721)
                      . ..+.+....+..-...|.+++.  +.+.++ +|....+.+|.+++.++...|.  -...+..+.|..+   .+++++.
T Consensus       193 ~ie~yk~~~~lRp~~g~wigala~--~edWlv-CGgGp~lslwhLrsse~t~vfp--ipa~v~~v~F~~d---~vl~~G~  264 (325)
T KOG0649|consen  193 MIEPYKNPNLLRPDWGKWIGALAV--NEDWLV-CGGGPKLSLWHLRSSESTCVFP--IPARVHLVDFVDD---CVLIGGE  264 (325)
T ss_pred             EeccccChhhcCcccCceeEEEec--cCceEE-ecCCCceeEEeccCCCceEEEe--cccceeEeeeecc---eEEEecc
Confidence            2 1122222222222234777776  445555 4556789999999999999987  6778888999754   5777888


Q ss_pred             CCcEEEEECCCCCceeEEEecCCCCeEEEEEecC-CCEEEEEeCCCcEEEE
Q 004969          615 DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPD-DHYLLGKGSGTSMFVQ  664 (721)
Q Consensus       615 DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpd-g~~Lasgs~Dg~I~VW  664 (721)
                      .+.|.-|.+..- .. ....-++....+..|+.. -+++..++..+.+.|+
T Consensus       265 g~~v~~~~l~Gv-l~-a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  265 GNHVQSYTLNGV-LQ-ANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             ccceeeeeeccE-EE-EeccCCccceeeecccCCceEEEEecccceeeeee
Confidence            888998987652 11 111122233334555432 3455556666777665

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.26  E-value=1.6e-10  Score=135.29  Aligned_cols=202  Identities=16%  Similarity=0.217  Sum_probs=141.5

Q ss_pred             EECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEec-cCCCeEEEEEe
Q 004969          481 VNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFD-EFDQLTSVHVN  559 (721)
Q Consensus       481 Wdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~-~~~~V~sv~~s  559 (721)
                      |+.+ |..+..+.  .|...|..++-+++++.+++|||.||+|++|+.+.-....   .......++. ....+..+...
T Consensus      1034 W~p~-G~lVAhL~--Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~---~s~rS~ltys~~~sr~~~vt~~ 1107 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLH--EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG---GSARSELTYSPEGSRVEKVTMC 1107 (1431)
T ss_pred             CCcc-ceEeehhh--hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc---ceeeeeEEEeccCCceEEEEec
Confidence            6654 67777665  8889999999998888999999999999999998632210   1111223333 44668888888


Q ss_pred             cCCCEEEEEeCCCcEEEEECCCC--c-----EEEEEccccCCC-eEEEEEcCCCCc-EEEEEECCCcEEEEECCCCCcee
Q 004969          560 SMDELFLASGYSKNIALYDINSG--R-----RLQVFADMHKEH-INVVKFSNHSPS-IFATSSFDQDVKLWDLRQKPIQP  630 (721)
Q Consensus       560 p~~~~lls~g~Dg~IrlWDl~s~--~-----~v~~l~~~h~~~-V~sI~fsPdg~~-lLaSgs~DgtIrIWDlrs~~~~~  630 (721)
                      +.++.+++++.||.|++.++...  +     ..+.......+. |..-+|...... .++.+..-+.|..||+++.....
T Consensus      1108 ~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w 1187 (1431)
T KOG1240|consen 1108 GNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAW 1187 (1431)
T ss_pred             cCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHH
Confidence            99999999999999999998852  1     112211111222 333344433334 77788888999999999864433


Q ss_pred             EEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC-CCccccc----ccCeEEEEECCCCC
Q 004969          631 CYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR-GDPFRDF----NMSILAAYTRPSSK  688 (721)
Q Consensus       631 ~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~l~~~----~~~V~~v~fsP~~~  688 (721)
                      ..+.....|.+ +++.+|.+.+++.|+..|.+-+||+| +-++..+    ..++..+..+|..+
T Consensus      1188 ~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~ 1251 (1431)
T KOG1240|consen 1188 RLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYP 1251 (1431)
T ss_pred             hhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCC
Confidence            34444444555 99999999999999999999999999 4444332    45677777777663

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.25  E-value=7.7e-10  Score=129.82  Aligned_cols=212  Identities=16%  Similarity=0.199  Sum_probs=148.4

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCC-----CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHEN-----ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIR  529 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~t-----g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~  529 (721)
                      .|..++.++.++.++++|+.||+|++||...     +.....+...-....+..+... ..++.+|.++.||.|++.+++
T Consensus      1050 ~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~-~~~~~~Av~t~DG~v~~~~id 1128 (1431)
T KOG1240|consen 1050 AVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMC-GNGDQFAVSTKDGSVRVLRID 1128 (1431)
T ss_pred             cccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEec-cCCCeEEEEcCCCeEEEEEcc
Confidence            4667788886779999999999999999753     1111222211235678888887 678999999999999999998


Q ss_pred             CCCCc--c------ccc------------------------ccCcceeEec--------------cCCCeEEEEEecCCC
Q 004969          530 HMPPS--I------RGM------------------------HYGAGTVTFD--------------EFDQLTSVHVNSMDE  563 (721)
Q Consensus       530 ~~~~~--~------~~~------------------------~~~~~~~~~~--------------~~~~V~sv~~sp~~~  563 (721)
                      .....  .      ...                        ......+.++              .++.|++++.+|.+.
T Consensus      1129 ~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~ 1208 (1431)
T KOG1240|consen 1129 HYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCN 1208 (1431)
T ss_pred             ccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCce
Confidence            62110  0      000                        0011111111              346699999999999


Q ss_pred             EEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCC--cEEEEEE--CCCcEEEEECCCCCceeEEEecCC--
Q 004969          564 LFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSP--SIFATSS--FDQDVKLWDLRQKPIQPCYTASSS--  637 (721)
Q Consensus       564 ~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~--~lLaSgs--~DgtIrIWDlrs~~~~~~~~~~~~--  637 (721)
                      .++.|...|.+.+||+|-+.++.....++..++..+..+|..+  ...++++  ..+.|.+|++.++.+..++.....  
T Consensus      1209 WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p 1288 (1431)
T KOG1240|consen 1209 WLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAP 1288 (1431)
T ss_pred             EEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCc
Confidence            9999999999999999999999888755678888888887654  4444444  477899999999866554433200  


Q ss_pred             -------------CCe---EEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          638 -------------KGN---VMVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       638 -------------~~~---vsl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                                   ...   +..++..-+.++.+|+.|..|+.||..
T Consensus      1289 ~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1289 ILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred             chhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCC
Confidence                         111   123444456788999999999999976

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.25  E-value=3.9e-11  Score=130.27  Aligned_cols=162  Identities=20%  Similarity=0.282  Sum_probs=124.4

Q ss_pred             CCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecC--CCEEEEEeCCCc
Q 004969          496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSM--DELFLASGYSKN  573 (721)
Q Consensus       496 ~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~--~~~lls~g~Dg~  573 (721)
                      ||.+.|.+++|+ .+|.+|++||+|-.+.|||.-..+...        .+.-.|...|.++.|-|.  +..+++|+.|+.
T Consensus        48 GH~GCVN~LeWn-~dG~lL~SGSDD~r~ivWd~~~~Kllh--------sI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~  118 (758)
T KOG1310|consen   48 GHTGCVNCLEWN-ADGELLASGSDDTRLIVWDPFEYKLLH--------SISTGHTANIFSVKFVPYTNNRIVLSGAGDKL  118 (758)
T ss_pred             cccceecceeec-CCCCEEeecCCcceEEeecchhcceee--------eeecccccceeEEeeeccCCCeEEEeccCcce
Confidence            999999999998 899999999999999999998654421        233456677899999875  456777778999


Q ss_pred             EEEEECCC----------CcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCC-ceeEE-------Eec
Q 004969          574 IALYDINS----------GRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKP-IQPCY-------TAS  635 (721)
Q Consensus       574 IrlWDl~s----------~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~-~~~~~-------~~~  635 (721)
                      |+++|+..          .+..+.+.. |...|..++-.|.+|+.+.+++.||+||-+|+|... +.+..       ...
T Consensus       119 i~lfdl~~~~~~~~d~~~~~~~~~~~c-ht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~  197 (758)
T KOG1310|consen  119 IKLFDLDSSKEGGMDHGMEETTRCWSC-HTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYN  197 (758)
T ss_pred             EEEEecccccccccccCccchhhhhhh-hhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhc
Confidence            99999984          234444554 899999999999999999999999999999999742 11110       000


Q ss_pred             CCCCeE-EEEEecCC-CEEEEEeCCCcEEEEEcC
Q 004969          636 SSKGNV-MVCFSPDD-HYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       636 ~~~~~v-sl~fSpdg-~~Lasgs~Dg~I~VWDl~  667 (721)
                      ..--.. ++..+|.. .+|++|+.|-..++||.+
T Consensus       198 ~~lielk~ltisp~rp~~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  198 PQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR  231 (758)
T ss_pred             hhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence            111112 78999954 678889999999999954

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.24  E-value=8.2e-10  Score=124.48  Aligned_cols=210  Identities=10%  Similarity=0.044  Sum_probs=135.6

Q ss_pred             CeEEEEEeCCCCCEEEEEECC---CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEE-EEEeCCC--eEEEEEc
Q 004969          455 RPRQFEYHPSISCLMVFGTLD---GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKL-IAGSDNG--SLKLYDI  528 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~D---G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~L-aSgs~DG--tVrIWDi  528 (721)
                      .+.+.+|+| +++.|+..+.+   ..|.+||+.+++.....   .+.+...+..|+ ++++.+ ++.+.+|  .|.+||+
T Consensus       205 ~v~~p~wSp-Dg~~la~~s~~~~~~~l~~~dl~~g~~~~l~---~~~g~~~~~~~S-pDG~~l~~~~s~~g~~~Iy~~d~  279 (433)
T PRK04922        205 PILSPAWSP-DGKKLAYVSFERGRSAIYVQDLATGQRELVA---SFRGINGAPSFS-PDGRRLALTLSRDGNPEIYVMDL  279 (433)
T ss_pred             ccccccCCC-CCCEEEEEecCCCCcEEEEEECCCCCEEEec---cCCCCccCceEC-CCCCEEEEEEeCCCCceEEEEEC
Confidence            367889999 89988887743   47999999888764332   223445578998 577655 4556665  5899999


Q ss_pred             CCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-CCc--EEEEECCCCcEEEEEccccCCCeEEEEEcCCC
Q 004969          529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-SKN--IALYDINSGRRLQVFADMHKEHINVVKFSNHS  605 (721)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-Dg~--IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg  605 (721)
                      .++...  .+.        .+.......+|+|++..++.++. +|.  |.++|+.+++......  +.......+|+|+|
T Consensus       280 ~~g~~~--~lt--------~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~--~g~~~~~~~~SpDG  347 (433)
T PRK04922        280 GSRQLT--RLT--------NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTF--QGNYNARASVSPDG  347 (433)
T ss_pred             CCCCeE--ECc--------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeec--CCCCccCEEECCCC
Confidence            875431  111        11123456799999998888774 444  7777877766443322  33445578999999


Q ss_pred             CcEEEEEECC-C--cEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCC---CcEEEEEcCCCccccc---cc
Q 004969          606 PSIFATSSFD-Q--DVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG---TSMFVQSLRGDPFRDF---NM  676 (721)
Q Consensus       606 ~~lLaSgs~D-g--tIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D---g~I~VWDl~g~~l~~~---~~  676 (721)
                       ..++..+.+ +  .|.+||+.++....   +..........|+|||++++..+.+   +.++++++.|...+..   .+
T Consensus       348 -~~Ia~~~~~~~~~~I~v~d~~~g~~~~---Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~~~g  423 (433)
T PRK04922        348 -KKIAMVHGSGGQYRIAVMDLSTGSVRT---LTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLVSADG  423 (433)
T ss_pred             -CEEEEEECCCCceeEEEEECCCCCeEE---CCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEcccCCC
Confidence             566554433 2  69999998875432   2222222367999999998876653   3678888876543322   33


Q ss_pred             CeEEEEECC
Q 004969          677 SILAAYTRP  685 (721)
Q Consensus       677 ~V~~v~fsP  685 (721)
                      .+...+|+|
T Consensus       424 ~~~~p~wsp  432 (433)
T PRK04922        424 EVREPAWSP  432 (433)
T ss_pred             CCCCCccCC
Confidence            455556665

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.23  E-value=8.3e-11  Score=125.02  Aligned_cols=177  Identities=14%  Similarity=0.125  Sum_probs=127.8

Q ss_pred             EEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 004969          502 LGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINS  581 (721)
Q Consensus       502 ~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s  581 (721)
                      ..++|+ .++..+++|+.||++|||+.......         .....|+..|.+++|+|++..+++.|.| ..+|||.++
T Consensus       148 k~vaf~-~~gs~latgg~dg~lRv~~~Ps~~t~---------l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~  216 (398)
T KOG0771|consen  148 KVVAFN-GDGSKLATGGTDGTLRVWEWPSMLTI---------LEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNT  216 (398)
T ss_pred             eEEEEc-CCCCEeeeccccceEEEEecCcchhh---------hhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEecc
Confidence            678888 78899999999999999997664331         1123466789999999999999999999 899999999


Q ss_pred             CcEEEEEcc-ccCCCeEEEEEcCCC---CcE-EEEEECCCcEEEEECCCCCc----eeEEEecCCCCeEEEEEecCCCEE
Q 004969          582 GRRLQVFAD-MHKEHINVVKFSNHS---PSI-FATSSFDQDVKLWDLRQKPI----QPCYTASSSKGNVMVCFSPDDHYL  652 (721)
Q Consensus       582 ~~~v~~l~~-~h~~~V~sI~fsPdg---~~l-LaSgs~DgtIrIWDlrs~~~----~~~~~~~~~~~~vsl~fSpdg~~L  652 (721)
                      |..+..... ........+.|+.++   ..+ ++....-+.|+.||+.....    ........+..+.+++.|++|+++
T Consensus       217 g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~  296 (398)
T KOG0771|consen  217 GAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFL  296 (398)
T ss_pred             CchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEE
Confidence            977666552 123345567777654   222 33334456677777654322    111222334455689999999999


Q ss_pred             EEEeCCCcEEEEEcCCCc-----ccccccCeEEEEECCCCCc
Q 004969          653 LGKGSGTSMFVQSLRGDP-----FRDFNMSILAAYTRPSSKS  689 (721)
Q Consensus       653 asgs~Dg~I~VWDl~g~~-----l~~~~~~V~~v~fsP~~~~  689 (721)
                      +.|+.||.|.|++...-.     -+.|.+.|..+.|+|+.++
T Consensus       297 AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~  338 (398)
T KOG0771|consen  297 ALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRY  338 (398)
T ss_pred             EEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCc
Confidence            999999999999976211     2456779999999999843

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.23  E-value=1.5e-09  Score=111.95  Aligned_cols=178  Identities=14%  Similarity=0.267  Sum_probs=126.2

Q ss_pred             CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEE
Q 004969          476 GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTS  555 (721)
Q Consensus       476 G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~s  555 (721)
                      ..|.|||-...+++..+.   -..+|.+|.+.   .+.+++.- .+.|.||........+....      +...+..+.+
T Consensus        75 NkviIWDD~k~~~i~el~---f~~~I~~V~l~---r~riVvvl-~~~I~VytF~~n~k~l~~~e------t~~NPkGlC~  141 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELS---FNSEIKAVKLR---RDRIVVVL-ENKIYVYTFPDNPKLLHVIE------TRSNPKGLCS  141 (346)
T ss_pred             ceEEEEecccCcEEEEEE---eccceeeEEEc---CCeEEEEe-cCeEEEEEcCCChhheeeee------cccCCCceEe
Confidence            579999977777777775   35789999985   45565554 56999999986433221111      1111223444


Q ss_pred             EEEecCCCEEEEEe-CCCcEEEEECCCCcE--EEEEccccCCCeEEEEEcCCCCcEEEEEECCCc-EEEEECCCCCceeE
Q 004969          556 VHVNSMDELFLASG-YSKNIALYDINSGRR--LQVFADMHKEHINVVKFSNHSPSIFATSSFDQD-VKLWDLRQKPIQPC  631 (721)
Q Consensus       556 v~~sp~~~~lls~g-~Dg~IrlWDl~s~~~--v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~Dgt-IrIWDlrs~~~~~~  631 (721)
                      ++-+.....++.-| .-|.|.|-|+...+.  ...+. +|.+.|.|++.+-+| .++||+|..|+ |||||..++.....
T Consensus       142 ~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~-AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~g~~l~E  219 (346)
T KOG2111|consen  142 LCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIIN-AHDSDIACVALNLQG-TLVATASTKGTLIRIFDTEDGTLLQE  219 (346)
T ss_pred             ecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEE-cccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcCCCcEeee
Confidence            44333333444444 369999999987655  34444 499999999999999 89999999998 79999999965443


Q ss_pred             EEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004969          632 YTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG  668 (721)
Q Consensus       632 ~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g  668 (721)
                      +.-......+ +++|||++.+|+++|..|+++|+.++.
T Consensus       220 ~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  220 LRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             eecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence            3322222334 999999999999999999999999984

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.23  E-value=5.8e-10  Score=117.59  Aligned_cols=215  Identities=11%  Similarity=0.150  Sum_probs=161.2

Q ss_pred             CEEEEEECCCeEEEEECCCCe----EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC--CeEEEEEcCCCCCccccccc
Q 004969          467 CLMVFGTLDGEIVVVNHENEN----IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN--GSLKLYDIRHMPPSIRGMHY  540 (721)
Q Consensus       467 ~~LasGs~DG~I~IWdl~tg~----~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D--GtVrIWDi~~~~~~~~~~~~  540 (721)
                      ..|+++-.+|.+.+|..+.+.    ....+.  . ...+..|.-++..+..+++||..  ..++|||++..++.+.....
T Consensus       116 g~Litc~~sG~l~~~~~k~~d~hss~l~~la--~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNv  192 (412)
T KOG3881|consen  116 GTLITCVSSGNLQVRHDKSGDLHSSKLIKLA--T-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNV  192 (412)
T ss_pred             CEEEEEecCCcEEEEeccCCccccccceeee--c-CCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCC
Confidence            678888999999999998443    222232  1 25567777776777888889998  89999999997665544433


Q ss_pred             CcceeEeccCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCC-cEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCc
Q 004969          541 GAGTVTFDEFDQLTSVHVNSM--DELFLASGYSKNIALYDINSG-RRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQD  617 (721)
Q Consensus       541 ~~~~~~~~~~~~V~sv~~sp~--~~~lls~g~Dg~IrlWDl~s~-~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~Dgt  617 (721)
                      ......+.-+-.++++.|-+.  ...|+++..-+.+|+||.+.+ +++..|.- ...+++++...|.+ +.+++|..-|.
T Consensus       193 pnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~-~E~~is~~~l~p~g-n~Iy~gn~~g~  270 (412)
T KOG3881|consen  193 PNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDF-LENPISSTGLTPSG-NFIYTGNTKGQ  270 (412)
T ss_pred             CCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEecc-ccCcceeeeecCCC-cEEEEecccch
Confidence            333333333445778888777  788999999999999999975 57777775 67899999999999 89999999999


Q ss_pred             EEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCc-ccc-c-ccCeEEEEECCCC
Q 004969          618 VKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDP-FRD-F-NMSILAAYTRPSS  687 (721)
Q Consensus       618 IrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~-l~~-~-~~~V~~v~fsP~~  687 (721)
                      +..||+++++. ....+.+-.+.+ ++..+|.+++++++|-|..++|+|+..+. +.. + ....+.+-+.++-
T Consensus       271 l~~FD~r~~kl-~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~~  343 (412)
T KOG3881|consen  271 LAKFDLRGGKL-LGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDDV  343 (412)
T ss_pred             hheecccCcee-eccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCCc
Confidence            99999999853 233356666666 89999999999999999999999998532 211 1 3455566665543

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.22  E-value=1.1e-10  Score=127.66  Aligned_cols=168  Identities=18%  Similarity=0.300  Sum_probs=132.7

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCC----------eEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEE
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENE----------NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLK  524 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg----------~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVr  524 (721)
                      .|.|+.+.+ ++..+.+|+-||+|+.|++...          .....+.  ||.+.|+.++++ .....|++++.||+|+
T Consensus       346 PVl~v~v~~-n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~--Ghtdavw~l~~s-~~~~~Llscs~DgTvr  421 (577)
T KOG0642|consen  346 PVLCVVVPS-NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLL--GHTDAVWLLALS-STKDRLLSCSSDGTVR  421 (577)
T ss_pred             ceEEEEecC-CceEEEeeccCceeeeeccCCCCCcccccCcchhcccee--ccccceeeeeec-ccccceeeecCCceEE
Confidence            689999999 9999999999999999976411          1122333  999999999998 6778899999999999


Q ss_pred             EEEcCCCCCccccc-c--c-------------------------------CcceeEec--------cCCCeEEEEEecCC
Q 004969          525 LYDIRHMPPSIRGM-H--Y-------------------------------GAGTVTFD--------EFDQLTSVHVNSMD  562 (721)
Q Consensus       525 IWDi~~~~~~~~~~-~--~-------------------------------~~~~~~~~--------~~~~V~sv~~sp~~  562 (721)
                      .|+.....+..... .  +                               ......+.        ....+.-+.++|..
T Consensus       422 ~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~  501 (577)
T KOG0642|consen  422 LWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTA  501 (577)
T ss_pred             eeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCC
Confidence            99987654411000 0  0                               00000000        11347788899999


Q ss_pred             CEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCc
Q 004969          563 ELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPI  628 (721)
Q Consensus       563 ~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~  628 (721)
                      +..+++..|+.|+++|..++++++.... |...++++++.|+| -++++|+.|+.+++|.+....+
T Consensus       502 ~~~~~~hed~~Ir~~dn~~~~~l~s~~a-~~~svtslai~~ng-~~l~s~s~d~sv~l~kld~k~~  565 (577)
T KOG0642|consen  502 DITFTAHEDRSIRFFDNKTGKILHSMVA-HKDSVTSLAIDPNG-PYLMSGSHDGSVRLWKLDVKTC  565 (577)
T ss_pred             CeeEecccCCceecccccccccchheee-ccceecceeecCCC-ceEEeecCCceeehhhccchhe
Confidence            9999999999999999999999999886 99999999999999 5999999999999999987644

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.21  E-value=6.2e-11  Score=119.14  Aligned_cols=161  Identities=20%  Similarity=0.358  Sum_probs=124.3

Q ss_pred             CeEEEEEeCCCCC--EEEEEECCCeEEEEECCCCeEEEEee--------cCCCCCCeEEEEEeeCCCCEEEEEeCCCeEE
Q 004969          455 RPRQFEYHPSISC--LMVFGTLDGEIVVVNHENENIVSYIP--------SFGAMNSVLGLCWLKKYPSKLIAGSDNGSLK  524 (721)
Q Consensus       455 ~V~~lafsP~dg~--~LasGs~DG~I~IWdl~tg~~i~~l~--------~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVr  524 (721)
                      .|.|..+...++.  ++++|..+|.|.+||+.++..+-.++        ...|..+|.++.|- +.-+.=++|+.+..+.
T Consensus       152 svmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldya-s~~~rGisgga~dkl~  230 (323)
T KOG0322|consen  152 SVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYA-SSCDRGISGGADDKLV  230 (323)
T ss_pred             ceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeec-hhhcCCcCCCccccce
Confidence            4777776554443  56788899999999999884433222        23789999999996 3444557788888899


Q ss_pred             EEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCC
Q 004969          525 LYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNH  604 (721)
Q Consensus       525 IWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPd  604 (721)
                      .|.+.......+    ........+ -.|..+.+-|++..++++|.|+.||+|..++..++..++. |...|++++|+|+
T Consensus       231 ~~Sl~~s~gslq----~~~e~~lkn-pGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLky-Hsagvn~vAfspd  304 (323)
T KOG0322|consen  231 MYSLNHSTGSLQ----IRKEITLKN-PGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKY-HSAGVNAVAFSPD  304 (323)
T ss_pred             eeeeccccCccc----ccceEEecC-CCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhh-hhcceeEEEeCCC
Confidence            999876422111    111222222 2477888889999999999999999999999999999997 9999999999999


Q ss_pred             CCcEEEEEECCCcEEEEEC
Q 004969          605 SPSIFATSSFDQDVKLWDL  623 (721)
Q Consensus       605 g~~lLaSgs~DgtIrIWDl  623 (721)
                      . .++|+++.|++|-+|++
T Consensus       305 ~-~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  305 C-ELMAAASKDARISLWKL  322 (323)
T ss_pred             C-chhhhccCCceEEeeec
Confidence            7 69999999999999986

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.21  E-value=2.2e-10  Score=118.91  Aligned_cols=161  Identities=13%  Similarity=0.197  Sum_probs=115.7

Q ss_pred             eEEEEEeCC-CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCC-CCeEEEEEeeCCCCEEEEEe----CCCeEEEEEcC
Q 004969          456 PRQFEYHPS-ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAM-NSVLGLCWLKKYPSKLIAGS----DNGSLKLYDIR  529 (721)
Q Consensus       456 V~~lafsP~-dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~-~~V~sl~fsp~d~~~LaSgs----~DGtVrIWDi~  529 (721)
                      +..+.|... .+..+.+++.||+|++||+........+....+. .+-.+++-+ ...+.+++|.    .|-.|.+||++
T Consensus        73 ~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~n-ck~~ii~~GtE~~~s~A~v~lwDvR  151 (376)
T KOG1188|consen   73 TNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLN-CKKNIIACGTELTRSDASVVLWDVR  151 (376)
T ss_pred             ccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeecc-CcCCeEEeccccccCceEEEEEEec
Confidence            344556553 4578899999999999999987766666554555 455666643 3556666664    36789999999


Q ss_pred             CCCCcccccccCcceeEeccCCCeEEEEEecCCCE-EEEEeCCCcEEEEECCCCc----EEEEEccccCCCeEEEEEcCC
Q 004969          530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDEL-FLASGYSKNIALYDINSGR----RLQVFADMHKEHINVVKFSNH  604 (721)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~-lls~g~Dg~IrlWDl~s~~----~v~~l~~~h~~~V~sI~fsPd  604 (721)
                      ..+..+.       ...-.|.+.|+++.|||.++. +++|+.||-|.+||+....    .+.++.  |...|.++.|...
T Consensus       152 ~~qq~l~-------~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN--~~sSI~~igw~~~  222 (376)
T KOG1188|consen  152 SEQQLLR-------QLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN--HGSSIHLIGWLSK  222 (376)
T ss_pred             cccchhh-------hhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhc--ccceeeeeeeecC
Confidence            8765322       223347788999999998754 5566679999999998532    334444  7788999999887


Q ss_pred             CCcEEEEEECCCcEEEEECCCC
Q 004969          605 SPSIFATSSFDQDVKLWDLRQK  626 (721)
Q Consensus       605 g~~lLaSgs~DgtIrIWDlrs~  626 (721)
                      +-..+.+-+.+.+..+|++..+
T Consensus       223 ~ykrI~clTH~Etf~~~ele~~  244 (376)
T KOG1188|consen  223 KYKRIMCLTHMETFAIYELEDG  244 (376)
T ss_pred             CcceEEEEEccCceeEEEccCC
Confidence            7446777888888889987653

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.21  E-value=1.5e-10  Score=125.77  Aligned_cols=162  Identities=17%  Similarity=0.231  Sum_probs=126.3

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCC--------------CeEEEEeecC------------CCCCCeEEEEEee
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHEN--------------ENIVSYIPSF------------GAMNSVLGLCWLK  508 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~t--------------g~~i~~l~~~------------~H~~~V~sl~fsp  508 (721)
                      +|+|+.|-|-+...++++-.+|.+++||.+.              +.........            --.++|...+|+ 
T Consensus       221 svT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS-  299 (636)
T KOG2394|consen  221 SVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS-  299 (636)
T ss_pred             ceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc-
Confidence            6999999998888888999999999997531              1111111110            123578899998 


Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEE
Q 004969          509 KYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVF  588 (721)
Q Consensus       509 ~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l  588 (721)
                      +++.+||+.|.||.+||+|..+....-.         .....+...|++|+|++.+|++||.|.-|.||.+..++.+..=
T Consensus       300 ~DG~~LA~VSqDGfLRvF~fdt~eLlg~---------mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARG  370 (636)
T KOG2394|consen  300 PDGKYLATVSQDGFLRIFDFDTQELLGV---------MKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARG  370 (636)
T ss_pred             CCCceEEEEecCceEEEeeccHHHHHHH---------HHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEec
Confidence            5999999999999999999998543100         0112256799999999999999999999999999999998888


Q ss_pred             ccccCCCeEEEEEcCC-----------------------------------C------------CcEEEEEECCCcEEEE
Q 004969          589 ADMHKEHINVVKFSNH-----------------------------------S------------PSIFATSSFDQDVKLW  621 (721)
Q Consensus       589 ~~~h~~~V~sI~fsPd-----------------------------------g------------~~lLaSgs~DgtIrIW  621 (721)
                      ++ |+++|+.|+|.|.                                   +            .+.|.+.+.|..+.+|
T Consensus       371 qG-HkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLW  449 (636)
T KOG2394|consen  371 QG-HKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLW  449 (636)
T ss_pred             cc-cccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEE
Confidence            87 9999999999831                                   0            1467888999999999


Q ss_pred             ECCCCC
Q 004969          622 DLRQKP  627 (721)
Q Consensus       622 Dlrs~~  627 (721)
                      |+....
T Consensus       450 DlteD~  455 (636)
T KOG2394|consen  450 DLTEDV  455 (636)
T ss_pred             ecchhh
Confidence            997653

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.21  E-value=2.5e-09  Score=120.64  Aligned_cols=210  Identities=9%  Similarity=0.024  Sum_probs=135.3

Q ss_pred             CeEEEEEeCCCCCEEEEEEC---CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEE-EEEeCCCe--EEEEEc
Q 004969          455 RPRQFEYHPSISCLMVFGTL---DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKL-IAGSDNGS--LKLYDI  528 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~---DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~L-aSgs~DGt--VrIWDi  528 (721)
                      .+.+.+|+| ||+.|+..+.   +..|.+||+.+|+... +.  .+.+.+...+|+ ++++.| ++.+.+|.  |.+||+
T Consensus       203 ~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~--~~~g~~~~~~~S-PDG~~la~~~~~~g~~~Iy~~d~  277 (435)
T PRK05137        203 LVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQREL-VG--NFPGMTFAPRFS-PDGRKVVMSLSQGGNTDIYTMDL  277 (435)
T ss_pred             CeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcEEE-ee--cCCCcccCcEEC-CCCCEEEEEEecCCCceEEEEEC
Confidence            488999999 8888887764   4689999999887643 32  445667788998 577765 46666665  666687


Q ss_pred             CCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-C--CcEEEEECCCCcEEEEEccccCCCeEEEEEcCCC
Q 004969          529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-S--KNIALYDINSGRRLQVFADMHKEHINVVKFSNHS  605 (721)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-D--g~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg  605 (721)
                      .++..  ..+..        +........|+|++..++.++. +  ..|++||+..++......  +...+....|+|+|
T Consensus       278 ~~~~~--~~Lt~--------~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~--~~~~~~~~~~SpdG  345 (435)
T PRK05137        278 RSGTT--TRLTD--------SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISF--GGGRYSTPVWSPRG  345 (435)
T ss_pred             CCCce--EEccC--------CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeec--CCCcccCeEECCCC
Confidence            76543  11111        1223466899999998887764 3  368888987665543332  34556778999999


Q ss_pred             CcEEEEEECC---CcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCC------CcEEEEEcCCCccccc--
Q 004969          606 PSIFATSSFD---QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG------TSMFVQSLRGDPFRDF--  674 (721)
Q Consensus       606 ~~lLaSgs~D---gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D------g~I~VWDl~g~~l~~~--  674 (721)
                       ..++..+.+   ..|.+||+.++... .  +..........|+|||++|+..+.+      ..++++|+.+...+.+  
T Consensus       346 -~~ia~~~~~~~~~~i~~~d~~~~~~~-~--lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~~  421 (435)
T PRK05137        346 -DLIAFTKQGGGQFSIGVMKPDGSGER-I--LTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVPT  421 (435)
T ss_pred             -CEEEEEEcCCCceEEEEEECCCCceE-e--ccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEccC
Confidence             566554433   35888898665322 2  2221222368999999998765543      2578888876543322  


Q ss_pred             ccCeEEEEECC
Q 004969          675 NMSILAAYTRP  685 (721)
Q Consensus       675 ~~~V~~v~fsP  685 (721)
                      .+.+..-+|+|
T Consensus       422 ~~~~~~p~Wsp  432 (435)
T PRK05137        422 PGDASDPAWSP  432 (435)
T ss_pred             CCCccCcccCC
Confidence            22344445555

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.19  E-value=1.7e-09  Score=108.57  Aligned_cols=149  Identities=15%  Similarity=0.367  Sum_probs=105.2

Q ss_pred             EEEEeCCCCCEEEEEEC----------CCeEEEEECC-CCeEEEEeecCCCCCCeEEEEEeeCCCCEEEE--EeCCCeEE
Q 004969          458 QFEYHPSISCLMVFGTL----------DGEIVVVNHE-NENIVSYIPSFGAMNSVLGLCWLKKYPSKLIA--GSDNGSLK  524 (721)
Q Consensus       458 ~lafsP~dg~~LasGs~----------DG~I~IWdl~-tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaS--gs~DGtVr  524 (721)
                      .+.|+| .|++|+.-..          -|...+|.++ .+.....+.. ...++|.+++|+ |+++.+++  |..++.|.
T Consensus        10 ~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l-~~~~~I~~~~Ws-P~g~~favi~g~~~~~v~   86 (194)
T PF08662_consen   10 KLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL-KKEGPIHDVAWS-PNGNEFAVIYGSMPAKVT   86 (194)
T ss_pred             EEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec-cCCCceEEEEEC-cCCCEEEEEEccCCcccE
Confidence            578999 7766655333          2345555552 2334444443 334679999999 56666543  44678999


Q ss_pred             EEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC---CCcEEEEECCCCcEEEEEccccCCCeEEEEE
Q 004969          525 LYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY---SKNIALYDINSGRRLQVFADMHKEHINVVKF  601 (721)
Q Consensus       525 IWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~---Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~f  601 (721)
                      +||++. +.          ...+ +..++..+.|+|+|..++++|.   .|.+.+||.++.+.+..+.  |. .++.++|
T Consensus        87 lyd~~~-~~----------i~~~-~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~~-~~t~~~W  151 (194)
T PF08662_consen   87 LYDVKG-KK----------IFSF-GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--HS-DATDVEW  151 (194)
T ss_pred             EEcCcc-cE----------eEee-cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc--cC-cEEEEEE
Confidence            999963 11          2223 2356789999999999999984   4679999999999888876  44 4789999


Q ss_pred             cCCCCcEEEEEEC------CCcEEEEECCC
Q 004969          602 SNHSPSIFATSSF------DQDVKLWDLRQ  625 (721)
Q Consensus       602 sPdg~~lLaSgs~------DgtIrIWDlrs  625 (721)
                      +|+| ++++++..      |..++||+...
T Consensus       152 sPdG-r~~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  152 SPDG-RYLATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             cCCC-CEEEEEEeccceeccccEEEEEecC
Confidence            9999 67777654      78899999864

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.18  E-value=6.6e-10  Score=116.00  Aligned_cols=178  Identities=16%  Similarity=0.267  Sum_probs=129.2

Q ss_pred             CCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 004969          499 NSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYD  578 (721)
Q Consensus       499 ~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWD  578 (721)
                      -.+..++|+ +.-..++++..|-+|++||-+.....         ..+-.....|++++|-|-+..-++.+.-+-|.+|.
T Consensus        99 ~dlr~~aWh-qH~~~fava~nddvVriy~ksst~pt---------~Lks~sQrnvtclawRPlsaselavgCr~gIciW~  168 (445)
T KOG2139|consen   99 IDLRGVAWH-QHIIAFAVATNDDVVRIYDKSSTCPT---------KLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWS  168 (445)
T ss_pred             cceeeEeec-hhhhhhhhhccCcEEEEeccCCCCCc---------eecchhhcceeEEEeccCCcceeeeeecceeEEEE
Confidence            357789998 56677889999999999998873321         22222335699999999887777777667799997


Q ss_pred             CCC----CcE--------EEEEccccCCCeEEEEEcCCCCcEEEEEEC-CCcEEEEECCCCCceeEEEecCCCCeEEEEE
Q 004969          579 INS----GRR--------LQVFADMHKEHINVVKFSNHSPSIFATSSF-DQDVKLWDLRQKPIQPCYTASSSKGNVMVCF  645 (721)
Q Consensus       579 l~s----~~~--------v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~-DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~f  645 (721)
                      ...    +..        ...+++....+|++++|++|| ..+++++. |..|+|||..++...++.. .+..+...+.|
T Consensus       169 ~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dg-t~l~tAS~gsssi~iWdpdtg~~~pL~~-~glgg~slLkw  246 (445)
T KOG2139|consen  169 DSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDG-TILVTASFGSSSIMIWDPDTGQKIPLIP-KGLGGFSLLKW  246 (445)
T ss_pred             cCcccccccccccccccchhheeCCCCceeeEEEEcCCC-CEEeecccCcceEEEEcCCCCCcccccc-cCCCceeeEEE
Confidence            652    221        122222123689999999999 67777765 6789999999998777652 33444557999


Q ss_pred             ecCCCEEEEEeCCCcEEEEEcC-CC---cccccccCeEEEEECCCCC
Q 004969          646 SPDDHYLLGKGSGTSMFVQSLR-GD---PFRDFNMSILAAYTRPSSK  688 (721)
Q Consensus       646 Spdg~~Lasgs~Dg~I~VWDl~-g~---~l~~~~~~V~~v~fsP~~~  688 (721)
                      ||||.+|+++.-|+..++|... ..   +-..-.+.|..+.|+|.|.
T Consensus       247 SPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGs  293 (445)
T KOG2139|consen  247 SPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGS  293 (445)
T ss_pred             cCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCC
Confidence            9999999999999999999544 11   1111245899999999995

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.17  E-value=3e-09  Score=119.70  Aligned_cols=213  Identities=12%  Similarity=0.086  Sum_probs=132.3

Q ss_pred             CeEEEEEeCCCCCEEEEEECC---CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEE-EEeCCCeEEEEEcCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLD---GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLI-AGSDNGSLKLYDIRH  530 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~D---G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~La-Sgs~DGtVrIWDi~~  530 (721)
                      .+.+.+|+| +++.|+..+.+   ..|.+||+.+|+.....   ...+.+.+..|+ ++++.|+ +.+.+|...||.++.
T Consensus       197 ~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~l~---~~~g~~~~~~~S-PDG~~la~~~~~~g~~~Iy~~d~  271 (427)
T PRK02889        197 PIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRVVA---NFKGSNSAPAWS-PDGRTLAVALSRDGNSQIYTVNA  271 (427)
T ss_pred             CcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEEee---cCCCCccceEEC-CCCCEEEEEEccCCCceEEEEEC
Confidence            477899999 88888877643   46999999988764432   223456688998 6777665 677888877776643


Q ss_pred             CCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-CCcEEEEE--CCCCcEEEEEccccCCCeEEEEEcCCCCc
Q 004969          531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-SKNIALYD--INSGRRLQVFADMHKEHINVVKFSNHSPS  607 (721)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-Dg~IrlWD--l~s~~~v~~l~~~h~~~V~sI~fsPdg~~  607 (721)
                      .......+.        .+........|+|+|..++.++. +|...+|.  +.+++......  +.......+|+|+| +
T Consensus       272 ~~~~~~~lt--------~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~--~g~~~~~~~~SpDG-~  340 (427)
T PRK02889        272 DGSGLRRLT--------QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTF--TGSYNTSPRISPDG-K  340 (427)
T ss_pred             CCCCcEECC--------CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEec--CCCCcCceEECCCC-C
Confidence            211111111        11123456789999999887764 45556664  44554333222  22334467899999 6


Q ss_pred             EEEEEECCC---cEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCC---cEEEEEcCCCcccc---cccCe
Q 004969          608 IFATSSFDQ---DVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGT---SMFVQSLRGDPFRD---FNMSI  678 (721)
Q Consensus       608 lLaSgs~Dg---tIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg---~I~VWDl~g~~l~~---~~~~V  678 (721)
                      .++..+.++   .|.+||+.++....+   ..........|+|||++|+.++.++   .+++.++.|...+.   ..+.+
T Consensus       341 ~Ia~~s~~~g~~~I~v~d~~~g~~~~l---t~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~~  417 (427)
T PRK02889        341 LLAYISRVGGAFKLYVQDLATGQVTAL---TDTTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQRLSVQGGDV  417 (427)
T ss_pred             EEEEEEccCCcEEEEEEECCCCCeEEc---cCCCCccCceECCCCCEEEEEEecCCCEEEEEEECCCCceEEeecCCCCC
Confidence            666655443   699999988754322   2222223679999999998876544   35555665543221   23445


Q ss_pred             EEEEECCC
Q 004969          679 LAAYTRPS  686 (721)
Q Consensus       679 ~~v~fsP~  686 (721)
                      ...+|+|-
T Consensus       418 ~~p~wsp~  425 (427)
T PRK02889        418 REPSWGPF  425 (427)
T ss_pred             CCCccCCC
Confidence            55566663

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.16  E-value=6.5e-09  Score=117.26  Aligned_cols=194  Identities=12%  Similarity=0.073  Sum_probs=129.8

Q ss_pred             CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeC---CCeEEEEEcCCCCCcccccccCcceeEeccCCC
Q 004969          476 GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD---NGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQ  552 (721)
Q Consensus       476 G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~---DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~  552 (721)
                      ..|.+||...+ ..+.+.  .|...+.+.+|+ ++++.|+..+.   +..|.+||+.+++...          .......
T Consensus       182 ~~l~~~d~dg~-~~~~lt--~~~~~v~~p~wS-pDG~~lay~s~~~g~~~i~~~dl~~g~~~~----------l~~~~g~  247 (435)
T PRK05137        182 KRLAIMDQDGA-NVRYLT--DGSSLVLTPRFS-PNRQEITYMSYANGRPRVYLLDLETGQREL----------VGNFPGM  247 (435)
T ss_pred             eEEEEECCCCC-CcEEEe--cCCCCeEeeEEC-CCCCEEEEEEecCCCCEEEEEECCCCcEEE----------eecCCCc
Confidence            47889998644 444444  567789999999 68888877653   4689999998865311          1112335


Q ss_pred             eEEEEEecCCCEEEEE-eCCC--cEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE-CCC--cEEEEECCCC
Q 004969          553 LTSVHVNSMDELFLAS-GYSK--NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS-FDQ--DVKLWDLRQK  626 (721)
Q Consensus       553 V~sv~~sp~~~~lls~-g~Dg--~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs-~Dg--tIrIWDlrs~  626 (721)
                      +...+|+|+|..++.+ +.++  .|.+||+.+++.. .+.. +........|+|+| ..++..+ .+|  .|.+||+.++
T Consensus       248 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~-~~~~~~~~~~spDG-~~i~f~s~~~g~~~Iy~~d~~g~  324 (435)
T PRK05137        248 TFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTD-SPAIDTSPSYSPDG-SQIVFESDRSGSPQLYVMNADGS  324 (435)
T ss_pred             ccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE-EccC-CCCccCceeEcCCC-CEEEEEECCCCCCeEEEEECCCC
Confidence            6778999999987654 4454  4888899877654 3443 55566789999999 5555554 333  5888898776


Q ss_pred             CceeEEEecCCCCeEEEEEecCCCEEEEEeCC---CcEEEEEcCCCccccc--ccCeEEEEECCCCC
Q 004969          627 PIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG---TSMFVQSLRGDPFRDF--NMSILAAYTRPSSK  688 (721)
Q Consensus       627 ~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D---g~I~VWDl~g~~l~~~--~~~V~~v~fsP~~~  688 (721)
                      ....+..  .........|+|||++|+..+.+   ..|.+||+.+...+..  ...+....|+|+++
T Consensus       325 ~~~~lt~--~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~  389 (435)
T PRK05137        325 NPRRISF--GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGR  389 (435)
T ss_pred             CeEEeec--CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCC
Confidence            5443322  11222367899999999876643   3688899875443322  22456689999993

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.15  E-value=1.6e-09  Score=111.80  Aligned_cols=189  Identities=15%  Similarity=0.143  Sum_probs=142.0

Q ss_pred             CCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeE-eccCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 004969          498 MNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVT-FDEFDQLTSVHVNSMDELFLASGYSKNIAL  576 (721)
Q Consensus       498 ~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~-~~~~~~V~sv~~sp~~~~lls~g~Dg~Irl  576 (721)
                      ..+|++.+|+ .+...++.+-....|.||.....+.       ...... -.|...|+.++|+|..+.|++++.|..-++
T Consensus        10 ~~pitchAwn-~drt~iAv~~~~~evhiy~~~~~~~-------w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayV   81 (361)
T KOG1523|consen   10 LEPITCHAWN-SDRTQIAVSPNNHEVHIYSMLGADL-------WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYV   81 (361)
T ss_pred             cCceeeeeec-CCCceEEeccCCceEEEEEecCCCC-------ceeceehhhhCcceeEEeecCCCCceeEccCCCCccc
Confidence            4689999998 7889999999999999999988653       111122 235567899999999999999999999999


Q ss_pred             EECCC-C--cEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCce--eEEEecCCCCe-EEEEEecCCC
Q 004969          577 YDINS-G--RRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQ--PCYTASSSKGN-VMVCFSPDDH  650 (721)
Q Consensus       577 WDl~s-~--~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~--~~~~~~~~~~~-vsl~fSpdg~  650 (721)
                      |.... +  ++...+.. +...+++|.|+|.+ +.||+||....|.||-.....--  ..+.-...... .++.|+|++-
T Consensus        82 w~~~~~~~WkptlvLlR-iNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV  159 (361)
T KOG1523|consen   82 WTQPSGGTWKPTLVLLR-INRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV  159 (361)
T ss_pred             cccCCCCeeccceeEEE-eccceeeEeecCcC-ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcc
Confidence            99843 3  34445554 88999999999999 89999999999999987764221  01111122233 4899999999


Q ss_pred             EEEEEeCCCcEEEEEc-----CCCc--------------cc---ccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          651 YLLGKGSGTSMFVQSL-----RGDP--------------FR---DFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       651 ~Lasgs~Dg~I~VWDl-----~g~~--------------l~---~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      .|++|+.|+..+|+..     +.++              +.   ...+.+..+.|+|.+       +.||--++.
T Consensus       160 LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG-------~~lawv~Hd  227 (361)
T KOG1523|consen  160 LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG-------NRLAWVGHD  227 (361)
T ss_pred             eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCC-------CEeeEecCC
Confidence            9999999999999873     2111              11   124579999999999       666665554

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.13  E-value=4.4e-09  Score=118.42  Aligned_cols=195  Identities=13%  Similarity=0.100  Sum_probs=122.6

Q ss_pred             CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC---CeEEEEEcCCCCCcccccccCcceeEeccCCC
Q 004969          476 GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN---GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQ  552 (721)
Q Consensus       476 G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D---GtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~  552 (721)
                      ..|.+||.. |.....+.  .+...+.+.+|+ ++++.|+.++.+   ..|.+||+.+++...          .......
T Consensus       176 ~~L~~~D~d-G~~~~~l~--~~~~~v~~p~wS-PDG~~la~~s~~~~~~~I~~~dl~~g~~~~----------l~~~~g~  241 (427)
T PRK02889        176 YQLQISDAD-GQNAQSAL--SSPEPIISPAWS-PDGTKLAYVSFESKKPVVYVHDLATGRRRV----------VANFKGS  241 (427)
T ss_pred             cEEEEECCC-CCCceEec--cCCCCcccceEc-CCCCEEEEEEccCCCcEEEEEECCCCCEEE----------eecCCCC
Confidence            467777774 44434443  556789999999 688888776643   459999998865311          0111234


Q ss_pred             eEEEEEecCCCEEEEE-eCCCcEEEE--ECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC--CCCC
Q 004969          553 LTSVHVNSMDELFLAS-GYSKNIALY--DINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDL--RQKP  627 (721)
Q Consensus       553 V~sv~~sp~~~~lls~-g~Dg~IrlW--Dl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDl--rs~~  627 (721)
                      +....|+|++..++.+ +.+|...||  |+.++. ...+.. +........|+|||..+++++..+|...+|.+  .++.
T Consensus       242 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~-~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~  319 (427)
T PRK02889        242 NSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQ-SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA  319 (427)
T ss_pred             ccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCC-CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc
Confidence            5678999999988754 567765555  455444 444543 55556678899999434444444566666655  4443


Q ss_pred             ceeEEEecCCCCeEEEEEecCCCEEEEEeCCC---cEEEEEcCCCccccc--ccCeEEEEECCCCC
Q 004969          628 IQPCYTASSSKGNVMVCFSPDDHYLLGKGSGT---SMFVQSLRGDPFRDF--NMSILAAYTRPSSK  688 (721)
Q Consensus       628 ~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg---~I~VWDl~g~~l~~~--~~~V~~v~fsP~~~  688 (721)
                      ...+ ...+ .......|||||++|+..+.++   .|++||+.+...+..  ........|+|+++
T Consensus       320 ~~~l-t~~g-~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~  383 (427)
T PRK02889        320 AQRV-TFTG-SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGR  383 (427)
T ss_pred             eEEE-ecCC-CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCC
Confidence            2222 2222 1222678999999998776554   599999874433322  12345678999994

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.12  E-value=4.3e-09  Score=120.64  Aligned_cols=223  Identities=16%  Similarity=0.168  Sum_probs=151.9

Q ss_pred             EEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCC--CEEEEEeCCCeEEEEEcCCCCCcccc
Q 004969          460 EYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYP--SKLIAGSDNGSLKLYDIRHMPPSIRG  537 (721)
Q Consensus       460 afsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~--~~LaSgs~DGtVrIWDi~~~~~~~~~  537 (721)
                      .|++ |+++++... +..|.||...+|.++..+.  +|..+++++.+.|...  .++++++.||+|++||...+......
T Consensus        23 vfSn-D~k~l~~~~-~~~V~VyS~~Tg~~i~~l~--~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~   98 (792)
T KOG1963|consen   23 VFSN-DAKFLFLCT-GNFVKVYSTATGECITSLE--DHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTF   98 (792)
T ss_pred             cccc-CCcEEEEee-CCEEEEEecchHhhhhhcc--cccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEE
Confidence            4777 777766655 5689999999999999777  8999999999986555  57889999999999999875431000


Q ss_pred             c---------c----cC-c----------cee-Eec-----------------cC-------CCeEEEEEecCCCEEEEE
Q 004969          538 M---------H----YG-A----------GTV-TFD-----------------EF-------DQLTSVHVNSMDELFLAS  568 (721)
Q Consensus       538 ~---------~----~~-~----------~~~-~~~-----------------~~-------~~V~sv~~sp~~~~lls~  568 (721)
                      -         .    .. .          ... .+.                 ..       ..-.++..++.+.... .
T Consensus        99 ~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~-i  177 (792)
T KOG1963|consen   99 DNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKG-I  177 (792)
T ss_pred             ecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEE-E
Confidence            0         0    00 0          000 000                 00       0012344434333333 3


Q ss_pred             eCCCcEEEEECCCCcEEEEE---ccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCC--CCceeEEEecCCCCeE-E
Q 004969          569 GYSKNIALYDINSGRRLQVF---ADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQ--KPIQPCYTASSSKGNV-M  642 (721)
Q Consensus       569 g~Dg~IrlWDl~s~~~v~~l---~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs--~~~~~~~~~~~~~~~v-s  642 (721)
                      ..+..+.+|+..++......   .-.|...+++.+++|.+ +++|+|..||.|.+|.--.  ........++-|...+ +
T Consensus       178 ~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~-~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~  256 (792)
T KOG1963|consen  178 VHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNE-RYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNS  256 (792)
T ss_pred             EEeeeEEEEEecccceeeccchhhhhhcccceeEEecccc-ceEEEeccCCcEEEEeccccccccccceEEEecccccce
Confidence            34556788888765421111   11267778999999999 8999999999999996443  2222334445555555 9


Q ss_pred             EEEecCCCEEEEEeCCCcEEEEEcCCC--c-ccccccCeEEEEECCCCC
Q 004969          643 VCFSPDDHYLLGKGSGTSMFVQSLRGD--P-FRDFNMSILAAYTRPSSK  688 (721)
Q Consensus       643 l~fSpdg~~Lasgs~Dg~I~VWDl~g~--~-l~~~~~~V~~v~fsP~~~  688 (721)
                      ++|+++|.+|++||..+.+-+|.+...  . +.....+|..+.++|++.
T Consensus       257 L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~  305 (792)
T KOG1963|consen  257 LSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSD  305 (792)
T ss_pred             eEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCC
Confidence            999999999999999999999998722  2 334478999999999984

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.12  E-value=6.8e-09  Score=117.06  Aligned_cols=194  Identities=12%  Similarity=0.048  Sum_probs=126.7

Q ss_pred             CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC---CeEEEEEcCCCCCcccccccCcceeEeccCCC
Q 004969          476 GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN---GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQ  552 (721)
Q Consensus       476 G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D---GtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~  552 (721)
                      .+|.+||...+. .+.+.  .+...+.+.+|+ ++++.|+.++.+   ..|.+||+.+++...         + ......
T Consensus       184 ~~l~i~D~~g~~-~~~lt--~~~~~v~~p~wS-pDg~~la~~s~~~~~~~l~~~dl~~g~~~~---------l-~~~~g~  249 (433)
T PRK04922        184 YALQVADSDGYN-PQTIL--RSAEPILSPAWS-PDGKKLAYVSFERGRSAIYVQDLATGQREL---------V-ASFRGI  249 (433)
T ss_pred             EEEEEECCCCCC-ceEee--cCCCccccccCC-CCCCEEEEEecCCCCcEEEEEECCCCCEEE---------e-ccCCCC
Confidence            468999986443 34444  456789999998 688888877643   469999998765311         0 011223


Q ss_pred             eEEEEEecCCCEEEEE-eCCC--cEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE-CCCc--EEEEECCCC
Q 004969          553 LTSVHVNSMDELFLAS-GYSK--NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS-FDQD--VKLWDLRQK  626 (721)
Q Consensus       553 V~sv~~sp~~~~lls~-g~Dg--~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs-~Dgt--IrIWDlrs~  626 (721)
                      ..+..|+|++..++.+ +.+|  .|++||+.+++... +.. +.......+|+|+| ..++.++ .+|.  |.++|+.++
T Consensus       250 ~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~-~~~~~~~~~~spDG-~~l~f~sd~~g~~~iy~~dl~~g  326 (433)
T PRK04922        250 NGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR-LTN-HFGIDTEPTWAPDG-KSIYFTSDRGGRPQIYRVAASGG  326 (433)
T ss_pred             ccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE-Ccc-CCCCccceEECCCC-CEEEEEECCCCCceEEEEECCCC
Confidence            4577999999988654 4444  59999999887543 433 55556678999999 5555544 4554  666677666


Q ss_pred             CceeEEEecCCCCeEEEEEecCCCEEEEEeCCC---cEEEEEcCCCccccc--ccCeEEEEECCCCC
Q 004969          627 PIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGT---SMFVQSLRGDPFRDF--NMSILAAYTRPSSK  688 (721)
Q Consensus       627 ~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg---~I~VWDl~g~~l~~~--~~~V~~v~fsP~~~  688 (721)
                      ....+ +..+ ......+|+|||++|+..+.++   .|++||+.+...+..  ........|+|+++
T Consensus       327 ~~~~l-t~~g-~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~  391 (433)
T PRK04922        327 SAERL-TFQG-NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGS  391 (433)
T ss_pred             CeEEe-ecCC-CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceECCCCC
Confidence            54332 2222 1222689999999998765443   689999875443322  22345568999994

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.12  E-value=4.3e-09  Score=120.59  Aligned_cols=163  Identities=13%  Similarity=0.140  Sum_probs=122.1

Q ss_pred             CCccCeEEEEEeCCCCCEEEEEECCCeEEEEECCC--CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEc
Q 004969          451 NRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHEN--ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDI  528 (721)
Q Consensus       451 ~~~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~t--g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi  528 (721)
                      .|.+.++|+++|| ++.++|+|..||.|.+|.--.  +.....-..+-|...|++++|+ .+|.+|+|||..|.+-+|.+
T Consensus       203 ~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS-~~G~~LlSGG~E~VLv~Wq~  280 (792)
T KOG1963|consen  203 HHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFS-SDGAYLLSGGREGVLVLWQL  280 (792)
T ss_pred             hhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEe-cCCceEeecccceEEEEEee
Confidence            3445589999999 999999999999999997432  2222211223688999999998 89999999999999999999


Q ss_pred             CCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcc----------ccCCCeEE
Q 004969          529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD----------MHKEHINV  598 (721)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~----------~h~~~V~s  598 (721)
                      .++++...          ..-.++|..+.++|+++.......|..|.+....+.....++.+          ...+-.+.
T Consensus       281 ~T~~kqfL----------PRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~  350 (792)
T KOG1963|consen  281 ETGKKQFL----------PRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTG  350 (792)
T ss_pred             cCCCcccc----------cccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccccccccccee
Confidence            99764221          12235689999999999999999999999998765544333332          12345667


Q ss_pred             EEEcCCCCcEEEEEECCCcEEEEECCCC
Q 004969          599 VKFSNHSPSIFATSSFDQDVKLWDLRQK  626 (721)
Q Consensus       599 I~fsPdg~~lLaSgs~DgtIrIWDlrs~  626 (721)
                      ++++|.- +.++-.+..|.|.+||+-+.
T Consensus       351 ~~idpr~-~~~vln~~~g~vQ~ydl~td  377 (792)
T KOG1963|consen  351 VSIDPRT-NSLVLNGHPGHVQFYDLYTD  377 (792)
T ss_pred             EEEcCCC-CceeecCCCceEEEEecccc
Confidence            8888844 56777777888888887653

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.10  E-value=1.7e-08  Score=113.60  Aligned_cols=194  Identities=13%  Similarity=0.063  Sum_probs=124.6

Q ss_pred             CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEe---CCCeEEEEEcCCCCCcccccccCcceeEeccCCC
Q 004969          476 GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS---DNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQ  552 (721)
Q Consensus       476 G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs---~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~  552 (721)
                      ..|.+||...+... .+.  .+...+.+.+|+ ++++.|+..+   .+..|.+|++.+++....          ......
T Consensus       179 ~~l~~~d~dg~~~~-~lt--~~~~~~~~p~wS-PDG~~la~~s~~~g~~~i~i~dl~~G~~~~l----------~~~~~~  244 (429)
T PRK03629        179 YELRVSDYDGYNQF-VVH--RSPQPLMSPAWS-PDGSKLAYVTFESGRSALVIQTLANGAVRQV----------ASFPRH  244 (429)
T ss_pred             eeEEEEcCCCCCCE-Eee--cCCCceeeeEEc-CCCCEEEEEEecCCCcEEEEEECCCCCeEEc----------cCCCCC
Confidence            47999998755443 333  445689999999 6888877654   345799999987653110          011123


Q ss_pred             eEEEEEecCCCEEEEEe-CCC--cEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC-CCcEEEE--ECCCC
Q 004969          553 LTSVHVNSMDELFLASG-YSK--NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF-DQDVKLW--DLRQK  626 (721)
Q Consensus       553 V~sv~~sp~~~~lls~g-~Dg--~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~-DgtIrIW--Dlrs~  626 (721)
                      +....|+|++..++... .+|  .|++||+.+++..+...  +...+....|+|+| +.++..+. ++..+||  |+.++
T Consensus       245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~--~~~~~~~~~wSPDG-~~I~f~s~~~g~~~Iy~~d~~~g  321 (429)
T PRK03629        245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD--GRSNNTEPTWFPDS-QNLAYTSDQAGRPQVYKVNINGG  321 (429)
T ss_pred             cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccC--CCCCcCceEECCCC-CEEEEEeCCCCCceEEEEECCCC
Confidence            45679999999888764 344  59999999887654433  44567889999999 55555444 4554555  66665


Q ss_pred             CceeEEEecCCCCeEEEEEecCCCEEEEEeCC---CcEEEEEcCCCcccccc--cCeEEEEECCCCC
Q 004969          627 PIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG---TSMFVQSLRGDPFRDFN--MSILAAYTRPSSK  688 (721)
Q Consensus       627 ~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D---g~I~VWDl~g~~l~~~~--~~V~~v~fsP~~~  688 (721)
                      ....+ ...+ .......|+|||++++..+.+   ..|++||+.+...+...  .......|+|+++
T Consensus       322 ~~~~l-t~~~-~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~  386 (429)
T PRK03629        322 APQRI-TWEG-SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGT  386 (429)
T ss_pred             CeEEe-ecCC-CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCC
Confidence            43322 2221 122268899999999876543   35888998754433221  1234578999993

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.09  E-value=2.2e-08  Score=103.47  Aligned_cols=158  Identities=20%  Similarity=0.316  Sum_probs=121.3

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECC-CCeEEEEeecCCCCCCeEEEEEeeCCCCEEEE--EeCCCeEEEEEcCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHE-NENIVSYIPSFGAMNSVLGLCWLKKYPSKLIA--GSDNGSLKLYDIRHM  531 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~-tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaS--gs~DGtVrIWDi~~~  531 (721)
                      .|+++.+.+   .+|++.- .+.|+||... +.+.++.+.........-+++  |..+..+++  |-.-|.|.|-|+...
T Consensus        96 ~I~~V~l~r---~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~--~~~~k~~LafPg~k~GqvQi~dL~~~  169 (346)
T KOG2111|consen   96 EIKAVKLRR---DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLC--PTSNKSLLAFPGFKTGQVQIVDLAST  169 (346)
T ss_pred             ceeeEEEcC---CeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeec--CCCCceEEEcCCCccceEEEEEhhhc
Confidence            588888888   6677665 5679999987 556666665444444555544  333333333  345699999999874


Q ss_pred             CCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCc-EEEEECCCCcEEEEEcc-ccCCCeEEEEEcCCCCcEE
Q 004969          532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKN-IALYDINSGRRLQVFAD-MHKEHINVVKFSNHSPSIF  609 (721)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~-IrlWDl~s~~~v~~l~~-~h~~~V~sI~fsPdg~~lL  609 (721)
                      ..       ........|...|.+++.+.+|..+++++..|+ |||||..+|+.+.++.. .....|++++|+|++ .++
T Consensus       170 ~~-------~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~-s~L  241 (346)
T KOG2111|consen  170 KP-------NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNS-SWL  241 (346)
T ss_pred             Cc-------CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCc-cEE
Confidence            43       123555678889999999999999999999887 99999999999999984 245679999999999 899


Q ss_pred             EEEECCCcEEEEECCCC
Q 004969          610 ATSSFDQDVKLWDLRQK  626 (721)
Q Consensus       610 aSgs~DgtIrIWDlrs~  626 (721)
                      |++|..|+++||.++..
T Consensus       242 avsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  242 AVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             EEEcCCCeEEEEEeecC
Confidence            99999999999998763

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.08  E-value=1.4e-10  Score=131.11  Aligned_cols=113  Identities=22%  Similarity=0.394  Sum_probs=99.1

Q ss_pred             CCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEE
Q 004969          496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIA  575 (721)
Q Consensus       496 ~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~Ir  575 (721)
                      +|.++|.|+.|- ..+.++++|++|..|+||.+++..+ .....        .|.+.|+.++.+..+-.+++++.|..|+
T Consensus       188 gH~naVyca~fD-rtg~~Iitgsdd~lvKiwS~et~~~-lAs~r--------Ghs~ditdlavs~~n~~iaaaS~D~vIr  257 (1113)
T KOG0644|consen  188 GHRNAVYCAIFD-RTGRYIITGSDDRLVKIWSMETARC-LASCR--------GHSGDITDLAVSSNNTMIAAASNDKVIR  257 (1113)
T ss_pred             hhhhheeeeeec-cccceEeecCccceeeeeeccchhh-hccCC--------CCccccchhccchhhhhhhhcccCceEE
Confidence            899999999996 8899999999999999999888654 23222        3456789999988888888899999999


Q ss_pred             EEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC
Q 004969          576 LYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLR  624 (721)
Q Consensus       576 lWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlr  624 (721)
                      +|-+..+.++..+.+ |.+.|++++|+|-.     +.+.||++++||.+
T Consensus       258 vWrl~~~~pvsvLrg-htgavtaiafsP~~-----sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  258 VWRLPDGAPVSVLRG-HTGAVTAIAFSPRA-----SSSDDGTCRIWDAR  300 (1113)
T ss_pred             EEecCCCchHHHHhc-cccceeeeccCccc-----cCCCCCceEecccc
Confidence            999999999999998 99999999999853     77899999999988

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.07  E-value=1.6e-08  Score=112.86  Aligned_cols=194  Identities=12%  Similarity=0.056  Sum_probs=128.6

Q ss_pred             eEEEEEeCCCCCEEEEEECC---CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEE-EEeCCC--eEEEEEcC
Q 004969          456 PRQFEYHPSISCLMVFGTLD---GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLI-AGSDNG--SLKLYDIR  529 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~D---G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~La-Sgs~DG--tVrIWDi~  529 (721)
                      +...+|+| ++++++.++.+   ..|++||+.+++.....   .+.+.+.+++|+ ++++.|+ +.+.++  .|.+||+.
T Consensus       192 ~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~~~~---~~~~~~~~~~~s-pDg~~l~~~~~~~~~~~i~~~d~~  266 (417)
T TIGR02800       192 ILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQREKVA---SFPGMNGAPAFS-PDGSKLAVSLSKDGNPDIYVMDLD  266 (417)
T ss_pred             eecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEEEee---cCCCCccceEEC-CCCCEEEEEECCCCCccEEEEECC
Confidence            66788999 89998887654   48999999988654433   334556778998 5776554 555554  58888887


Q ss_pred             CCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-CC--cEEEEECCCCcEEEEEccccCCCeEEEEEcCCCC
Q 004969          530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-SK--NIALYDINSGRRLQVFADMHKEHINVVKFSNHSP  606 (721)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-Dg--~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~  606 (721)
                      ++...  .+.        .+........|+|++..++.++. ++  .|.++|+.+++... +.. +...+..+.|+|+| 
T Consensus       267 ~~~~~--~l~--------~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~-~~~~~~~~~~spdg-  333 (417)
T TIGR02800       267 GKQLT--RLT--------NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LTF-RGGYNASPSWSPDG-  333 (417)
T ss_pred             CCCEE--ECC--------CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eec-CCCCccCeEECCCC-
Confidence            75431  111        11122345688999998887764 33  58888988776543 332 45567788999999 


Q ss_pred             cEEEEEECCC---cEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCC---cEEEEEcCCCc
Q 004969          607 SIFATSSFDQ---DVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGT---SMFVQSLRGDP  670 (721)
Q Consensus       607 ~lLaSgs~Dg---tIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg---~I~VWDl~g~~  670 (721)
                      ..++.++.++   .|.+||+.++....+   ..........|+|+|++|+.++.++   .+++.+..|..
T Consensus       334 ~~i~~~~~~~~~~~i~~~d~~~~~~~~l---~~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~  400 (417)
T TIGR02800       334 DLIAFVHREGGGFNIAVMDLDGGGERVL---TDTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRF  400 (417)
T ss_pred             CEEEEEEccCCceEEEEEeCCCCCeEEc---cCCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCce
Confidence            6777666665   788999987643222   2122222568999999998877654   45566665543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.05  E-value=1.1e-08  Score=112.98  Aligned_cols=191  Identities=14%  Similarity=0.206  Sum_probs=151.6

Q ss_pred             CCCEEEEEECCCeEEEEECCCCeEEEEeecCCC-CCCeEEEEEe------e-------------CCCCEEEEEeCCCeEE
Q 004969          465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGA-MNSVLGLCWL------K-------------KYPSKLIAGSDNGSLK  524 (721)
Q Consensus       465 dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H-~~~V~sl~fs------p-------------~d~~~LaSgs~DGtVr  524 (721)
                      ...++|....||.++||+..+++....+....| .+..++..|.      |             .+...++-|...|.|-
T Consensus         4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~   83 (541)
T KOG4547|consen    4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL   83 (541)
T ss_pred             hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence            568899999999999999999988777765444 3455666663      1             2334677788899999


Q ss_pred             EEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCC
Q 004969          525 LYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNH  604 (721)
Q Consensus       525 IWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPd  604 (721)
                      +|++..++....       ...-.|.+.|.++.++.+-..|.+++.|+.+..|+...+..++.+.. .+..+.+++.+||
T Consensus        84 ~ys~~~g~it~~-------~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~-~~~~~~sl~is~D  155 (541)
T KOG4547|consen   84 LYSVAGGEITAK-------LSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKE-QKPLVSSLCISPD  155 (541)
T ss_pred             EEEecCCeEEEE-------EecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeecc-CCCccceEEEcCC
Confidence            999988765211       12234667899999999999999999999999999999999999986 7888999999999


Q ss_pred             CCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecC-----CCEEEEE-eCCCcEEEEEcCC
Q 004969          605 SPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPD-----DHYLLGK-GSGTSMFVQSLRG  668 (721)
Q Consensus       605 g~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpd-----g~~Lasg-s~Dg~I~VWDl~g  668 (721)
                      | ..+++++  +.|++||+.+++.  +.++.||.+++ ++.|--+     |.+++++ ..+..+.+|-+.+
T Consensus       156 ~-~~l~~as--~~ik~~~~~~kev--v~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  156 G-KILLTAS--RQIKVLDIETKEV--VITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             C-CEEEecc--ceEEEEEccCceE--EEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            8 7888887  7899999999854  77889999999 7888776     6777654 4455678887763

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.05  E-value=2e-08  Score=110.36  Aligned_cols=214  Identities=14%  Similarity=0.245  Sum_probs=145.9

Q ss_pred             CeEEEEEeCC-CCCEEEE-----EECCCeEEEEECCCCeEEEEeecCC--CCCCeEEEEEeeCCCCEEEEEeCC------
Q 004969          455 RPRQFEYHPS-ISCLMVF-----GTLDGEIVVVNHENENIVSYIPSFG--AMNSVLGLCWLKKYPSKLIAGSDN------  520 (721)
Q Consensus       455 ~V~~lafsP~-dg~~Las-----Gs~DG~I~IWdl~tg~~i~~l~~~~--H~~~V~sl~fsp~d~~~LaSgs~D------  520 (721)
                      .++.++++|. ....+|+     ++.-+.|+||....+..-..+...+  -.+.| .+.|++....+|+.++.|      
T Consensus       167 ~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkv-qm~WN~~gt~LLvLastdVDktn~  245 (566)
T KOG2315|consen  167 GITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKV-QMKWNKLGTALLVLASTDVDKTNA  245 (566)
T ss_pred             ceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccccccee-EEEeccCCceEEEEEEEeecCCCc
Confidence            4788889984 3345554     4566789999876332222111100  11223 477875444455444432      


Q ss_pred             -----CeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe--CCCcEEEEECCCCcEEEEEccccC
Q 004969          521 -----GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG--YSKNIALYDINSGRRLQVFADMHK  593 (721)
Q Consensus       521 -----GtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g--~Dg~IrlWDl~s~~~v~~l~~~h~  593 (721)
                           .++++.++.+          ....+.+...++|.++.|+|++..|+++-  .-..+.|||++ +.++..+.   .
T Consensus       246 SYYGEq~Lyll~t~g----------~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~---e  311 (566)
T KOG2315|consen  246 SYYGEQTLYLLATQG----------ESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP---E  311 (566)
T ss_pred             cccccceEEEEEecC----------ceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC---C
Confidence                 2556666553          44567777789999999999999888775  35789999998 88888875   4


Q ss_pred             CCeEEEEEcCCCCcEEEEEECC---CcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeC------CCcEEEE
Q 004969          594 EHINVVKFSNHSPSIFATSSFD---QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGS------GTSMFVQ  664 (721)
Q Consensus       594 ~~V~sI~fsPdg~~lLaSgs~D---gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~------Dg~I~VW  664 (721)
                      ++=+++-|+|.| ++++.+|.+   |.|.|||+.+.++  +..+.. ...+-+.|+|||++++|++.      |+.++||
T Consensus       312 gpRN~~~fnp~g-~ii~lAGFGNL~G~mEvwDv~n~K~--i~~~~a-~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiw  387 (566)
T KOG2315|consen  312 GPRNTAFFNPHG-NIILLAGFGNLPGDMEVWDVPNRKL--IAKFKA-ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIW  387 (566)
T ss_pred             CCccceEECCCC-CEEEEeecCCCCCceEEEeccchhh--cccccc-CCceEEEEcCCCcEEEEEeccccEEecCCeEEE
Confidence            566788999999 787777764   7899999998654  333332 23335799999999998865      6899999


Q ss_pred             EcCCCccccc--ccCeEEEEECCCC
Q 004969          665 SLRGDPFRDF--NMSILAAYTRPSS  687 (721)
Q Consensus       665 Dl~g~~l~~~--~~~V~~v~fsP~~  687 (721)
                      ++.|..+..-  ......+.|.|-.
T Consensus       388 hytG~~l~~~~f~sEL~qv~W~P~~  412 (566)
T KOG2315|consen  388 HYTGSLLHEKMFKSELLQVEWRPFN  412 (566)
T ss_pred             EecCceeehhhhhHhHhheeeeecC
Confidence            9998875432  3347778888654

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.00  E-value=5.9e-08  Score=109.24  Aligned_cols=210  Identities=13%  Similarity=0.066  Sum_probs=131.4

Q ss_pred             CeEEEEEeCCCCCEEEEEECC---CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEE-EEeCCC--eEEEEEc
Q 004969          455 RPRQFEYHPSISCLMVFGTLD---GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLI-AGSDNG--SLKLYDI  528 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~D---G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~La-Sgs~DG--tVrIWDi  528 (721)
                      .+....|+| +++.|+..+.+   ..|.+||+.+|+......   ..+.+....|+ ++++.|+ +.+.+|  .|.+||+
T Consensus       200 ~~~~p~wSp-DG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~---~~g~~~~~~~S-pDG~~la~~~~~~g~~~Iy~~d~  274 (430)
T PRK00178        200 PILSPRWSP-DGKRIAYVSFEQKRPRIFVQNLDTGRREQITN---FEGLNGAPAWS-PDGSKLAFVLSKDGNPEIYVMDL  274 (430)
T ss_pred             ceeeeeECC-CCCEEEEEEcCCCCCEEEEEECCCCCEEEccC---CCCCcCCeEEC-CCCCEEEEEEccCCCceEEEEEC
Confidence            467889999 88888776643   369999999887644322   22345568898 6777665 555555  5778898


Q ss_pred             CCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-C--CcEEEEECCCCcEEEEEccccCCCeEEEEEcCCC
Q 004969          529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-S--KNIALYDINSGRRLQVFADMHKEHINVVKFSNHS  605 (721)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-D--g~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg  605 (721)
                      .++...  .+..        +........|+|++..++..+. +  ..|.++|+.+++..+...  .........|+|+|
T Consensus       275 ~~~~~~--~lt~--------~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~--~~~~~~~~~~Spdg  342 (430)
T PRK00178        275 ASRQLS--RVTN--------HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF--VGNYNARPRLSADG  342 (430)
T ss_pred             CCCCeE--Eccc--------CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec--CCCCccceEECCCC
Confidence            875431  1111        1223456789999998887764 3  358888888777543322  22233457899999


Q ss_pred             CcEEEEEE-CCC--cEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCC---CcEEEEEcCCCcccc---ccc
Q 004969          606 PSIFATSS-FDQ--DVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG---TSMFVQSLRGDPFRD---FNM  676 (721)
Q Consensus       606 ~~lLaSgs-~Dg--tIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D---g~I~VWDl~g~~l~~---~~~  676 (721)
                       ..++..+ .++  .|.+||+.++....+..   ........|+|||++++..+.+   ..++++++.|...+.   ..+
T Consensus       343 -~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~---~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g  418 (430)
T PRK00178        343 -KTLVMVHRQDGNFHVAAQDLQRGSVRILTD---TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLPTAQG  418 (430)
T ss_pred             -CEEEEEEccCCceEEEEEECCCCCEEEccC---CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECcCCCC
Confidence             4555444 333  58889998875433221   1122256899999999876644   357777877654322   223


Q ss_pred             CeEEEEECC
Q 004969          677 SILAAYTRP  685 (721)
Q Consensus       677 ~V~~v~fsP  685 (721)
                      .+...+|+|
T Consensus       419 ~~~~p~ws~  427 (430)
T PRK00178        419 EVREPSWSP  427 (430)
T ss_pred             CcCCCccCC
Confidence            444455655

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.00  E-value=5.1e-08  Score=110.42  Aligned_cols=211  Identities=11%  Similarity=0.041  Sum_probs=127.8

Q ss_pred             CeEEEEEeCCCCCEEEEEECC---CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEE-EEeCCCe--EEEEEc
Q 004969          455 RPRQFEYHPSISCLMVFGTLD---GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLI-AGSDNGS--LKLYDI  528 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~D---G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~La-Sgs~DGt--VrIWDi  528 (721)
                      .+.+..|+| ||+.|+..+.+   ..|.+||+.+++.......   .+.....+|+ ++++.|+ +.+.+|.  |.+||+
T Consensus       219 ~~~~p~wSP-DG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~---~g~~~~~~wS-PDG~~La~~~~~~g~~~Iy~~dl  293 (448)
T PRK04792        219 PLMSPAWSP-DGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF---PGINGAPRFS-PDGKKLALVLSKDGQPEIYVVDI  293 (448)
T ss_pred             cccCceECC-CCCEEEEEEecCCCcEEEEEECCCCCeEEecCC---CCCcCCeeEC-CCCCEEEEEEeCCCCeEEEEEEC
Confidence            466789999 88888876543   2688999988765433221   2234467898 6777665 4566775  667787


Q ss_pred             CCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-C--CcEEEEECCCCcEEEEEccccCCCeEEEEEcCCC
Q 004969          529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-S--KNIALYDINSGRRLQVFADMHKEHINVVKFSNHS  605 (721)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-D--g~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg  605 (721)
                      .+++.  ..+.        .+.......+|+|++..++.++. +  ..|.++|+.+++......  ........+|+|+|
T Consensus       294 ~tg~~--~~lt--------~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~--~g~~~~~~~~SpDG  361 (448)
T PRK04792        294 ATKAL--TRIT--------RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTF--EGEQNLGGSITPDG  361 (448)
T ss_pred             CCCCe--EECc--------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEec--CCCCCcCeeECCCC
Confidence            76542  1111        11223466789999998887764 3  357777888777544322  22233457899999


Q ss_pred             CcEEEEEECCCc--EEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCC-C--cEEEEEcCCCccccc---ccC
Q 004969          606 PSIFATSSFDQD--VKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG-T--SMFVQSLRGDPFRDF---NMS  677 (721)
Q Consensus       606 ~~lLaSgs~Dgt--IrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D-g--~I~VWDl~g~~l~~~---~~~  677 (721)
                      ..+++++..++.  |.++|+.++....+   ..........|+|||++|+..+.+ +  .+++++..|...+..   .+.
T Consensus       362 ~~l~~~~~~~g~~~I~~~dl~~g~~~~l---t~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~~~~g~  438 (448)
T PRK04792        362 RSMIMVNRTNGKFNIARQDLETGAMQVL---TSTRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLPAGQGE  438 (448)
T ss_pred             CEEEEEEecCCceEEEEEECCCCCeEEc---cCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECcCCCCC
Confidence            544444444554  55578877654322   111112245899999988766543 3  377778876543322   234


Q ss_pred             eEEEEECC
Q 004969          678 ILAAYTRP  685 (721)
Q Consensus       678 V~~v~fsP  685 (721)
                      +...+|+|
T Consensus       439 ~~~p~Wsp  446 (448)
T PRK04792        439 VKSPAWSP  446 (448)
T ss_pred             cCCCccCC
Confidence            45556665

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.99  E-value=3.1e-08  Score=101.38  Aligned_cols=205  Identities=17%  Similarity=0.249  Sum_probs=142.6

Q ss_pred             CCeEEEEECCCCeEEE--EeecCCCCCCeEEEEEee--CCCC-EEEEEeCCCeEEEEEcCCCCCc--ccccccCcceeEe
Q 004969          475 DGEIVVVNHENENIVS--YIPSFGAMNSVLGLCWLK--KYPS-KLIAGSDNGSLKLYDIRHMPPS--IRGMHYGAGTVTF  547 (721)
Q Consensus       475 DG~I~IWdl~tg~~i~--~l~~~~H~~~V~sl~fsp--~d~~-~LaSgs~DGtVrIWDi~~~~~~--~~~~~~~~~~~~~  547 (721)
                      -|.+.+|++...+...  +++... ...+..+.|.-  .++. .++-+-.+|.|.++........  +..+....-.+  
T Consensus        45 ~Gkl~Lys~~d~~~~~l~~~q~~d-ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~--  121 (339)
T KOG0280|consen   45 SGKLHLYSLEDMKLSPLDTLQCTD-TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISV--  121 (339)
T ss_pred             ccceEEEeecccccCccceeeeec-ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhh--
Confidence            4678888887654433  232222 35677788862  3444 5666778899999987653321  11111111000  


Q ss_pred             ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcE--EEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCC
Q 004969          548 DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRR--LQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQ  625 (721)
Q Consensus       548 ~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~--v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs  625 (721)
                         ....++.|++.+..++++-.+|.+.+-+......  ++..+. |.-.+....|+...++++.+|+.|+.+..||+|.
T Consensus       122 ---~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~-He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~  197 (339)
T KOG0280|consen  122 ---VEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKV-HEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRI  197 (339)
T ss_pred             ---eeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccc-cceeeeeeecccCCCceEEecCCCceEEEEEecC
Confidence               1246788999999999998999999776665543  346676 9999999999998889999999999999999994


Q ss_pred             CCceeEEE--ecCCCCeEEEEEec-CCCEEEEEeCCCcEEEEEcC--CCccccc--ccCeEEEEECCCC
Q 004969          626 KPIQPCYT--ASSSKGNVMVCFSP-DDHYLLGKGSGTSMFVQSLR--GDPFRDF--NMSILAAYTRPSS  687 (721)
Q Consensus       626 ~~~~~~~~--~~~~~~~vsl~fSp-dg~~Lasgs~Dg~I~VWDl~--g~~l~~~--~~~V~~v~fsP~~  687 (721)
                      .+ ..++.  ..++.+.+++.-+| .+.++++|+.|..|++||.|  ++|+..-  .+.|..+.+||.-
T Consensus       198 p~-~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~  265 (339)
T KOG0280|consen  198 PK-TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEI  265 (339)
T ss_pred             Cc-ceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchh
Confidence            32 22322  22345555776665 68899999999999999999  6776543  5789999999975

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=98.98  E-value=1.3e-08  Score=118.53  Aligned_cols=194  Identities=14%  Similarity=0.130  Sum_probs=145.6

Q ss_pred             CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEe-eCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcc
Q 004969          465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWL-KKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAG  543 (721)
Q Consensus       465 dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fs-p~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~  543 (721)
                      +...++.++.+..+.+||...+.....++...-.--..++-+- ..+.-++++|+--+.|.+|+.......         
T Consensus        98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p---------  168 (967)
T KOG0974|consen   98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKP---------  168 (967)
T ss_pred             hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCc---------
Confidence            5578899999999999999887776665421100011111111 134558899999999999999843321         


Q ss_pred             eeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEE-EEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 004969          544 TVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQ-VFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWD  622 (721)
Q Consensus       544 ~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~-~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWD  622 (721)
                      .....|.+.|.++.++.++.++++.++|.++|+|++.+++... +.-+ |...|..+.|.|.   .++|++.|-+.++|+
T Consensus       169 ~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fg-HsaRvw~~~~~~n---~i~t~gedctcrvW~  244 (967)
T KOG0974|consen  169 IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFG-HSARVWACCFLPN---RIITVGEDCTCRVWG  244 (967)
T ss_pred             ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccc-ccceeEEEEeccc---eeEEeccceEEEEEe
Confidence            2355677889999999999999999999999999999988766 3334 9999999999986   799999999999997


Q ss_pred             CCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCccc
Q 004969          623 LRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFR  672 (721)
Q Consensus       623 lrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~  672 (721)
                      ....... .+..+...+...++..++....+|++.|+.+++|++.++...
T Consensus       245 ~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e  293 (967)
T KOG0974|consen  245 VNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLE  293 (967)
T ss_pred             cccceeh-hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccccc
Confidence            7654332 332222233448999999999999999999999998765433

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.98  E-value=9e-08  Score=106.89  Aligned_cols=195  Identities=13%  Similarity=0.051  Sum_probs=125.7

Q ss_pred             CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC---CeEEEEEcCCCCCcccccccCcceeEeccCC
Q 004969          475 DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN---GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFD  551 (721)
Q Consensus       475 DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D---GtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~  551 (721)
                      ...|.++|...+.. ..+.  .+...+...+|+ +++++|+.++.+   ..|.+||+.+++...          ......
T Consensus       169 ~~~l~~~d~~g~~~-~~l~--~~~~~~~~p~~S-pdg~~la~~~~~~~~~~i~v~d~~~g~~~~----------~~~~~~  234 (417)
T TIGR02800       169 RYELQVADYDGANP-QTIT--RSREPILSPAWS-PDGQKLAYVSFESGKPEIYVQDLATGQREK----------VASFPG  234 (417)
T ss_pred             cceEEEEcCCCCCC-EEee--cCCCceecccCC-CCCCEEEEEEcCCCCcEEEEEECCCCCEEE----------eecCCC
Confidence            34688888764433 3343  455678899998 688888877644   479999998864311          111223


Q ss_pred             CeEEEEEecCCCEEEEEe-CC--CcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE-CCC--cEEEEECCC
Q 004969          552 QLTSVHVNSMDELFLASG-YS--KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS-FDQ--DVKLWDLRQ  625 (721)
Q Consensus       552 ~V~sv~~sp~~~~lls~g-~D--g~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs-~Dg--tIrIWDlrs  625 (721)
                      .+.+.+|+|++..++.+. .+  ..|++||+.++.... +.. +........|+|+| ..++..+ .++  .|.+||+.+
T Consensus       235 ~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~~-~~~~~~~~~~s~dg-~~l~~~s~~~g~~~iy~~d~~~  311 (417)
T TIGR02800       235 MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR-LTN-GPGIDTEPSWSPDG-KSIAFTSDRGGSPQIYMMDADG  311 (417)
T ss_pred             CccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE-CCC-CCCCCCCEEECCCC-CEEEEEECCCCCceEEEEECCC
Confidence            456788999998887654 33  459999998776543 332 44555677899999 5555444 344  577888877


Q ss_pred             CCceeEEEecCCCCeEEEEEecCCCEEEEEeCCC---cEEEEEcCCCccccc--ccCeEEEEECCCCC
Q 004969          626 KPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGT---SMFVQSLRGDPFRDF--NMSILAAYTRPSSK  688 (721)
Q Consensus       626 ~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg---~I~VWDl~g~~l~~~--~~~V~~v~fsP~~~  688 (721)
                      ++...+. . .........|+|+|++++.++.++   .|++||+.+...+..  ........|+|+++
T Consensus       312 ~~~~~l~-~-~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~spdg~  377 (417)
T TIGR02800       312 GEVRRLT-F-RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGR  377 (417)
T ss_pred             CCEEEee-c-CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCceECCCCC
Confidence            6543222 1 222233689999999999888765   788999875432222  12234458999983

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=98.95  E-value=5.9e-09  Score=121.29  Aligned_cols=151  Identities=19%  Similarity=0.249  Sum_probs=124.4

Q ss_pred             EEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCccccc
Q 004969          459 FEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGM  538 (721)
Q Consensus       459 lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~  538 (721)
                      +-+++ +.-++++|+.-|.|.+|+......-..+.  ||.+.|.++.|+ .++.+++++|+|.++|+|++++.+..    
T Consensus       139 ~g~s~-~~~~i~~gsv~~~iivW~~~~dn~p~~l~--GHeG~iF~i~~s-~dg~~i~s~SdDRsiRlW~i~s~~~~----  210 (967)
T KOG0974|consen  139 IGDSA-EELYIASGSVFGEIIVWKPHEDNKPIRLK--GHEGSIFSIVTS-LDGRYIASVSDDRSIRLWPIDSREVL----  210 (967)
T ss_pred             EeccC-cEEEEEeccccccEEEEeccccCCcceec--ccCCceEEEEEc-cCCcEEEEEecCcceeeeeccccccc----
Confidence            34455 66899999999999999987332222233  999999999998 89999999999999999999996652    


Q ss_pred             ccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcE
Q 004969          539 HYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDV  618 (721)
Q Consensus       539 ~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtI  618 (721)
                          ....|.|...|..+.++|.  .++++|.|-+.++|+.. ++.+..+.+.....+..++..+.. .+.+|++.|+.+
T Consensus       211 ----~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~-~~~vT~g~Ds~l  282 (967)
T KOG0974|consen  211 ----GCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGV-IIKVTGGNDSTL  282 (967)
T ss_pred             ----CcccccccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCc-eEEEeeccCcch
Confidence                2567888889999999876  99999999999999766 555557776234679999999887 799999999999


Q ss_pred             EEEECCC
Q 004969          619 KLWDLRQ  625 (721)
Q Consensus       619 rIWDlrs  625 (721)
                      ++||+..
T Consensus       283 k~~~l~~  289 (967)
T KOG0974|consen  283 KLWDLNG  289 (967)
T ss_pred             hhhhhhc
Confidence            9999865

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.94  E-value=2.7e-09  Score=128.88  Aligned_cols=184  Identities=16%  Similarity=0.286  Sum_probs=142.7

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|+++.-|| ...+.++|+.||.|++|....++.+..++..|. ..|+.+.|+ ..|+.+..+..||.+.+|.+.. ++ 
T Consensus      2210 ~v~r~~sHp-~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~-~qGnk~~i~d~dg~l~l~q~~p-k~- 2284 (2439)
T KOG1064|consen 2210 NVRRMTSHP-SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFN-HQGNKFGIVDGDGDLSLWQASP-KP- 2284 (2439)
T ss_pred             ceeeecCCC-CCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhc-ccCCceeeeccCCceeecccCC-cc-
Confidence            378888999 667788999999999999999998888887565 889999998 7889999999999999999983 11 


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEe---CCCcEEEEECCCC---cEEEEEccccCCCeEEEEEcCCCCcE
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG---YSKNIALYDINSG---RRLQVFADMHKEHINVVKFSNHSPSI  608 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g---~Dg~IrlWDl~s~---~~v~~l~~~h~~~V~sI~fsPdg~~l  608 (721)
                      +....        .|......+.|-.  ..++++|   .++.+.+||..-.   ..+.  . .|.+.++++++-|.. .+
T Consensus      2285 ~~s~q--------chnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~-~H~~gaT~l~~~P~~-ql 2350 (2439)
T KOG1064|consen 2285 YTSWQ--------CHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--T-CHDGGATVLAYAPKH-QL 2350 (2439)
T ss_pred             eeccc--------cCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--e-ecCCCceEEEEcCcc-eE
Confidence            11111        1233455666633  5566665   3688999997632   2333  3 499999999999998 89


Q ss_pred             EEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004969          609 FATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRG  668 (721)
Q Consensus       609 LaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g  668 (721)
                      +++||.+|.|++||++..+....+  +.        ++ ...++++|+..|.++||++.+
T Consensus      2351 lisggr~G~v~l~D~rqrql~h~~--~~--------~~-~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2351 LISGGRKGEVCLFDIRQRQLRHTF--QA--------LD-TREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred             EEecCCcCcEEEeehHHHHHHHHh--hh--------hh-hhheeeccCcccceEEEEccc
Confidence            999999999999999987553322  21        44 678899999999999999984

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=98.94  E-value=2.1e-08  Score=110.08  Aligned_cols=204  Identities=14%  Similarity=0.196  Sum_probs=145.5

Q ss_pred             EEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCccc
Q 004969          457 RQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIR  536 (721)
Q Consensus       457 ~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~  536 (721)
                      +.+.++.....+++.| ....|+-++++.|+.+..+..  ..+.++++..+ +...+|++|+.+|.|-.||.+..... .
T Consensus       137 RDm~y~~~scDly~~g-sg~evYRlNLEqGrfL~P~~~--~~~~lN~v~in-~~hgLla~Gt~~g~VEfwDpR~ksrv-~  211 (703)
T KOG2321|consen  137 RDMKYHKPSCDLYLVG-SGSEVYRLNLEQGRFLNPFET--DSGELNVVSIN-EEHGLLACGTEDGVVEFWDPRDKSRV-G  211 (703)
T ss_pred             ccccccCCCccEEEee-cCcceEEEEcccccccccccc--ccccceeeeec-CccceEEecccCceEEEecchhhhhh-e
Confidence            3456665344555544 455799999999999888873  34789999988 56678999999999999999875431 1


Q ss_pred             ccccCcceeE--e-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969          537 GMHYGAGTVT--F-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS  613 (721)
Q Consensus       537 ~~~~~~~~~~--~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs  613 (721)
                      .+.....+..  . .....|+++.|+.+|-.+++|..+|.|.|||+++.+++..-..+...+|..+.|.+.+..--+...
T Consensus       212 ~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~  291 (703)
T KOG2321|consen  212 TLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM  291 (703)
T ss_pred             eeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec
Confidence            1111111000  0 112349999998778889999999999999999999887766445678999999877432333344


Q ss_pred             CCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          614 FDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       614 ~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                      ....++|||-.+++.  ...+........+++-|++.+++++-.++.+..|=+.
T Consensus       292 Dk~~~kiWd~~~Gk~--~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP  343 (703)
T KOG2321|consen  292 DKRILKIWDECTGKP--MASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYIP  343 (703)
T ss_pred             chHHhhhcccccCCc--eeeccccCCcCceeeecCCceEEEecCCCcceeEEcc
Confidence            557799999999855  3344444444478999999999999988887766554

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=98.93  E-value=8.7e-08  Score=105.38  Aligned_cols=212  Identities=17%  Similarity=0.186  Sum_probs=147.3

Q ss_pred             eEEEEEeCCCCCE-EEEEECCCeEEEEECCCCeEEEEeecCCCC-CCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969          456 PRQFEYHPSISCL-MVFGTLDGEIVVVNHENENIVSYIPSFGAM-NSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       456 V~~lafsP~dg~~-LasGs~DG~I~IWdl~tg~~i~~l~~~~H~-~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~  533 (721)
                      .+.|..+| ||.+ +|+|...-.|++||+..-.....    .|. ..+..+.....+-..++---.|.+|-+...-+.  
T Consensus        54 st~ik~s~-DGqY~lAtG~YKP~ikvydlanLSLKFE----RhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~--  126 (703)
T KOG2321|consen   54 STRIKVSP-DGQYLLATGTYKPQIKVYDLANLSLKFE----RHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR--  126 (703)
T ss_pred             cceeEecC-CCcEEEEecccCCceEEEEcccceeeee----ecccccceeEEEeccchhhheEeecCceeeehhhcCe--
Confidence            46788999 6655 67788899999999986544322    222 233333332244445555566777765443321  


Q ss_pred             cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969          534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS  613 (721)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs  613 (721)
                                .....-+..-.++++|....-++.+|....|+-+++..|+.+..|.. ..+.++++..++-. .++++|+
T Consensus       127 ----------hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~-~~~~lN~v~in~~h-gLla~Gt  194 (703)
T KOG2321|consen  127 ----------HYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET-DSGELNVVSINEEH-GLLACGT  194 (703)
T ss_pred             ----------eeeeecCcCCccccccCCCccEEEeecCcceEEEEcccccccccccc-ccccceeeeecCcc-ceEEecc
Confidence                      11111122335677777777788888888899999999999998885 66899999999988 6999999


Q ss_pred             CCCcEEEEECCCCCceeEEEec----CCCC------eEEEEEecCCCEEEEEeCCCcEEEEEcCC-Cc--cccc--ccCe
Q 004969          614 FDQDVKLWDLRQKPIQPCYTAS----SSKG------NVMVCFSPDDHYLLGKGSGTSMFVQSLRG-DP--FRDF--NMSI  678 (721)
Q Consensus       614 ~DgtIrIWDlrs~~~~~~~~~~----~~~~------~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g-~~--l~~~--~~~V  678 (721)
                      .+|.|..||.|+..........    .+.+      +.++.|+.+|-.+++|+.+|.+.|||++. .|  ++.|  ..+|
T Consensus       195 ~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi  274 (703)
T KOG2321|consen  195 EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPI  274 (703)
T ss_pred             cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccce
Confidence            9999999999986443322221    1111      33899999999999999999999999993 34  3344  4588


Q ss_pred             EEEEECCC
Q 004969          679 LAAYTRPS  686 (721)
Q Consensus       679 ~~v~fsP~  686 (721)
                      ..+.|.+.
T Consensus       275 ~~l~~~~~  282 (703)
T KOG2321|consen  275 KKLDWQDT  282 (703)
T ss_pred             eeeccccc
Confidence            88888776

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.92  E-value=3.1e-09  Score=114.08  Aligned_cols=209  Identities=15%  Similarity=0.254  Sum_probs=152.7

Q ss_pred             ceeeeeccCCCCCCCCCccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEE
Q 004969          436 CLHTLTVSGNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLI  515 (721)
Q Consensus       436 ~~~~l~~~gh~~~~~~~~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~La  515 (721)
                      +..-+...|...+.......|..+.|-| ..-+|++++..|-++--|+.+|+.+..+.  .-.+.+..++-+ |.+..+-
T Consensus       192 y~yvYD~~GtElHClk~~~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~--t~~G~~~vm~qN-P~NaVih  267 (545)
T KOG1272|consen  192 YVYVYDNNGTELHCLKRHIRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIR--TGAGRTDVMKQN-PYNAVIH  267 (545)
T ss_pred             eEEEecCCCcEEeehhhcCchhhhcccc-hhheeeecccCCceEEEeechhhhhHHHH--ccCCccchhhcC-CccceEE
Confidence            3333444444444445556788999999 77899999999999999999999998876  335778888877 5667888


Q ss_pred             EEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCC
Q 004969          516 AGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEH  595 (721)
Q Consensus       516 Sgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~  595 (721)
                      +|...|+|.+|......+.++         ...|.++|.++++++.|.+++++|.|..++|||+++-..+.++..  ..+
T Consensus       268 ~GhsnGtVSlWSP~skePLvK---------iLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t--p~~  336 (545)
T KOG1272|consen  268 LGHSNGTVSLWSPNSKEPLVK---------ILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT--PHP  336 (545)
T ss_pred             EcCCCceEEecCCCCcchHHH---------HHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec--CCC
Confidence            999999999999988665332         234668899999999999999999999999999998877766652  456


Q ss_pred             eEEEEEcCCCCcEEEEEECCCcEEEEECC-CC--CceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEE
Q 004969          596 INVVKFSNHSPSIFATSSFDQDVKLWDLR-QK--PIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMF  662 (721)
Q Consensus       596 V~sI~fsPdg~~lLaSgs~DgtIrIWDlr-s~--~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~  662 (721)
                      ...+++|..|  ++ +.+....|.||.=. .+  .....+..+...+.| .+.|.|-...|-.|...|.-.
T Consensus       337 a~~ls~Sqkg--lL-A~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~ts  404 (545)
T KOG1272|consen  337 ASNLSLSQKG--LL-ALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITS  404 (545)
T ss_pred             cccccccccc--ce-eeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCcee
Confidence            7788998776  44 44555679999532 21  111111111222345 799999888888877666443

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.91  E-value=3.1e-08  Score=103.13  Aligned_cols=209  Identities=18%  Similarity=0.259  Sum_probs=137.8

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCCCe-----EEEEeecC----------CCCCCeEEEEEeeCC-CCEEEEEeC
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENEN-----IVSYIPSF----------GAMNSVLGLCWLKKY-PSKLIAGSD  519 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~-----~i~~l~~~----------~H~~~V~sl~fsp~d-~~~LaSgs~  519 (721)
                      +.++.|.. .|.+||+|..+|.|.++.-+...     ....++.+          .-...|..+.|.++. ...++..+.
T Consensus        28 is~vef~~-~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstN  106 (433)
T KOG1354|consen   28 ISAVEFDH-YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTN  106 (433)
T ss_pred             eeeEEeec-ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecC
Confidence            78999999 99999999999999999754322     22223211          113468889998543 346777789


Q ss_pred             CCeEEEEEcCCCCCccc-------------------ccccCc------cee--EeccCCCeEEEEEecCCCEEEEEeCCC
Q 004969          520 NGSLKLYDIRHMPPSIR-------------------GMHYGA------GTV--TFDEFDQLTSVHVNSMDELFLASGYSK  572 (721)
Q Consensus       520 DGtVrIWDi~~~~~~~~-------------------~~~~~~------~~~--~~~~~~~V~sv~~sp~~~~lls~g~Dg  572 (721)
                      |.+|++|.+........                   .+..+.      +..  .-.|.-.|.++.+++++..++++ +|-
T Consensus       107 dktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-DdL  185 (433)
T KOG1354|consen  107 DKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-DDL  185 (433)
T ss_pred             CcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-cce
Confidence            99999999875433210                   000000      011  11245569999998888877764 578


Q ss_pred             cEEEEECCCCcE---EEEEcc----ccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCc----eeEEEecCC----
Q 004969          573 NIALYDINSGRR---LQVFAD----MHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPI----QPCYTASSS----  637 (721)
Q Consensus       573 ~IrlWDl~s~~~---v~~l~~----~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~----~~~~~~~~~----  637 (721)
                      .|-+|.+.-...   +.-++.    .-..-|++..|+|..-++++-.+..|+||+-|+|....    ..++..+..    
T Consensus       186 RINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~r  265 (433)
T KOG1354|consen  186 RINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSR  265 (433)
T ss_pred             eeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcch
Confidence            899999873221   222221    02346889999998878899999999999999995321    111211111    


Q ss_pred             ---CC---eE-EEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          638 ---KG---NV-MVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       638 ---~~---~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                         ..   .+ .+.|+++|+|+++-. --+|++||+.
T Consensus       266 sffseiIsSISDvKFs~sGryilsRD-yltvk~wD~n  301 (433)
T KOG1354|consen  266 SFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLN  301 (433)
T ss_pred             hhHHHHhhhhhceEEccCCcEEEEec-cceeEEEecc
Confidence               11   12 589999999999654 4689999995

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.87  E-value=5.9e-07  Score=99.11  Aligned_cols=190  Identities=13%  Similarity=0.158  Sum_probs=127.1

Q ss_pred             CEE-EEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCccee
Q 004969          467 CLM-VFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTV  545 (721)
Q Consensus       467 ~~L-asGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~  545 (721)
                      +++ ++-..+|.|.|.|..+.+.+..+..  ....-..+.|+ ++++++++++.||.|.++|+.+.+.          ..
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~--~~~~h~~~~~s-~Dgr~~yv~~rdg~vsviD~~~~~~----------v~   72 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPT--GGAPHAGLKFS-PDGRYLYVANRDGTVSVIDLATGKV----------VA   72 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE---STTEEEEEE-T-T-SSEEEEEETTSEEEEEETTSSSE----------EE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcC--CCCceeEEEec-CCCCEEEEEcCCCeEEEEECCcccE----------EE
Confidence            444 4556789999999999999999874  22223446666 7899999999999999999999663          22


Q ss_pred             EeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEccc------cCCCeEEEEEcCCCCcEEEEEECCCcE
Q 004969          546 TFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADM------HKEHINVVKFSNHSPSIFATSSFDQDV  618 (721)
Q Consensus       546 ~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~v~~l~~~------h~~~V~sI~fsPdg~~lLaSgs~DgtI  618 (721)
                      .........+++++++|.+++++. ..+.+.++|.++.+.++.+...      ....+.+|..+|..+.++++--.-+.|
T Consensus        73 ~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I  152 (369)
T PF02239_consen   73 TIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEI  152 (369)
T ss_dssp             EEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEE
T ss_pred             EEecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeE
Confidence            222233457899999999999887 4899999999999999887631      234678888888884444444445778


Q ss_pred             EEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEE-eCCCcEEEEEcCCC
Q 004969          619 KLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGK-GSGTSMFVQSLRGD  669 (721)
Q Consensus       619 rIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasg-s~Dg~I~VWDl~g~  669 (721)
                      -+-|..................-...|+|+++|++++ ..++.|-++|....
T Consensus       153 ~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~  204 (369)
T PF02239_consen  153 WVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG  204 (369)
T ss_dssp             EEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT
T ss_pred             EEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccc
Confidence            7888777544434444444445578999999998765 45678888987743

...

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=98.86  E-value=3.4e-07  Score=94.97  Aligned_cols=217  Identities=11%  Similarity=0.109  Sum_probs=137.0

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI  535 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~  535 (721)
                      |.-+.|..+....+.....|+.|.+|++...+-...+.  ....++.+++|+|.....|.+..-|-.|.+|.+.+.+...
T Consensus        51 i~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId--eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~  128 (447)
T KOG4497|consen   51 IVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID--EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL  128 (447)
T ss_pred             hhheeeeccceeeeeeeeccceEEEEEeecceeEEEec--cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence            55688998444455566788999999999888777776  5568899999995433677777889999999999855421


Q ss_pred             cccccCcceeEeccCCCeEEEEEecCCCEEEEEeC------------------------------------CCcEEEEEC
Q 004969          536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY------------------------------------SKNIALYDI  579 (721)
Q Consensus       536 ~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~------------------------------------Dg~IrlWDl  579 (721)
                      ....          +..+..++|+|+|+..+..+.                                    +..+.+||-
T Consensus       129 ~~~p----------K~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~  198 (447)
T KOG4497|consen  129 LPHP----------KTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDN  198 (447)
T ss_pred             eccc----------ccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecc
Confidence            1111          112344555555544333321                                    112334443


Q ss_pred             CCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCc-------------------------------
Q 004969          580 NSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPI-------------------------------  628 (721)
Q Consensus       580 ~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~-------------------------------  628 (721)
                      --.-.+..+.  .+-.+..++|+|-+ ++++.|+.|+.+||-+--+.+.                               
T Consensus       199 ~Leykv~aYe--~~lG~k~v~wsP~~-qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~  275 (447)
T KOG4497|consen  199 VLEYKVYAYE--RGLGLKFVEWSPCN-QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHH  275 (447)
T ss_pred             hhhheeeeee--eccceeEEEecccc-ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhccc
Confidence            2222222222  33568889999988 8999999999988754221000                               


Q ss_pred             ---------------------------eeEEEec------CCCCeE-EEEEecCCCEEEEEeCC--CcEEEEEcCCCccc
Q 004969          629 ---------------------------QPCYTAS------SSKGNV-MVCFSPDDHYLLGKGSG--TSMFVQSLRGDPFR  672 (721)
Q Consensus       629 ---------------------------~~~~~~~------~~~~~v-sl~fSpdg~~Lasgs~D--g~I~VWDl~g~~l~  672 (721)
                                                 +.+..+.      .....+ .++|++|..|+++-...  +.+.+||++...+.
T Consensus       276 cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~  355 (447)
T KOG4497|consen  276 CLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLH  355 (447)
T ss_pred             ccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhh
Confidence                                       0000000      001112 58999999999987543  57899999844332


Q ss_pred             ---ccccCeEEEEECCCC
Q 004969          673 ---DFNMSILAAYTRPSS  687 (721)
Q Consensus       673 ---~~~~~V~~v~fsP~~  687 (721)
                         ....+|....|+|..
T Consensus       356 avLiQk~piraf~WdP~~  373 (447)
T KOG4497|consen  356 AVLIQKHPIRAFEWDPGR  373 (447)
T ss_pred             hhhhhccceeEEEeCCCC
Confidence               225689999999998

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.84  E-value=6.5e-07  Score=100.84  Aligned_cols=216  Identities=11%  Similarity=0.044  Sum_probs=125.4

Q ss_pred             eEEEEEeCCCCCE--E-EEEECC--CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeC-----CCeEEE
Q 004969          456 PRQFEYHPSISCL--M-VFGTLD--GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD-----NGSLKL  525 (721)
Q Consensus       456 V~~lafsP~dg~~--L-asGs~D--G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~-----DGtVrI  525 (721)
                      ..+-.|+| ||+.  + ++...+  ..|.+.++.+|+......   ..+.....+|+ ++++.|+..+.     +..+.+
T Consensus       187 ~~sP~wSP-DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~---~~g~~~~p~wS-PDG~~Laf~s~~~g~~di~~~~  261 (428)
T PRK01029        187 SITPTWMH-IGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA---LQGNQLMPTFS-PRKKLLAFISDRYGNPDLFIQS  261 (428)
T ss_pred             cccceEcc-CCCceEEEEEEccCCCceEEEEECCCCCceEeec---CCCCccceEEC-CCCCEEEEEECCCCCcceeEEE
Confidence            34568999 7764  2 244444  367788888776544332   23345567898 68877766542     334555


Q ss_pred             EEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-CCcEEEE--ECCC-CcEEEEEccccCCCeEEEEE
Q 004969          526 YDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-SKNIALY--DINS-GRRLQVFADMHKEHINVVKF  601 (721)
Q Consensus       526 WDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-Dg~IrlW--Dl~s-~~~v~~l~~~h~~~V~sI~f  601 (721)
                      |++..+...      ....+...........+|+|+|..++..+. +|...+|  ++.. +.....+.. +...+....|
T Consensus       262 ~~~~~g~~g------~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~-~~~~~~~p~w  334 (428)
T PRK01029        262 FSLETGAIG------KPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK-KYRNSSCPAW  334 (428)
T ss_pred             eecccCCCC------cceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc-CCCCccceeE
Confidence            776653110      000111111123456799999998887763 5654555  4432 233444443 4456778899


Q ss_pred             cCCCCcEEEEEEC-C--CcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeC---CCcEEEEEcCCCccccc-
Q 004969          602 SNHSPSIFATSSF-D--QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGS---GTSMFVQSLRGDPFRDF-  674 (721)
Q Consensus       602 sPdg~~lLaSgs~-D--gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~---Dg~I~VWDl~g~~l~~~-  674 (721)
                      +|+| +.++..+. +  ..|.+||+.+++...+..  .........|+|||++|+..+.   ...|++|++.+...... 
T Consensus       335 SPDG-~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~--~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt  411 (428)
T PRK01029        335 SPDG-KKIAFCSVIKGVRQICVYDLATGRDYQLTT--SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV  411 (428)
T ss_pred             CCCC-CEEEEEEcCCCCcEEEEEECCCCCeEEccC--CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence            9999 55554433 3  369999999886543321  1112236899999998875443   34688889875432222 


Q ss_pred             --ccCeEEEEECCC
Q 004969          675 --NMSILAAYTRPS  686 (721)
Q Consensus       675 --~~~V~~v~fsP~  686 (721)
                        .+.+...+|+|.
T Consensus       412 ~~~g~~~~p~Ws~~  425 (428)
T PRK01029        412 IGSGEKRFPSWGAF  425 (428)
T ss_pred             cCCCcccCceecCC
Confidence              233455666664

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.84  E-value=5.8e-07  Score=101.23  Aligned_cols=194  Identities=9%  Similarity=0.008  Sum_probs=122.9

Q ss_pred             eEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC---CeEEEEEcCCCCCcccccccCcceeEeccCCCe
Q 004969          477 EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN---GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQL  553 (721)
Q Consensus       477 ~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D---GtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V  553 (721)
                      .|.++|...+.. ..+.  .+...+....|+ ++++.|+..+.+   ..|.+||+.++....  +.        .....+
T Consensus       180 ~l~~~d~~g~~~-~~l~--~~~~~~~~p~wS-pDG~~la~~s~~~~~~~l~~~~l~~g~~~~--l~--------~~~g~~  245 (430)
T PRK00178        180 TLQRSDYDGARA-VTLL--QSREPILSPRWS-PDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--IT--------NFEGLN  245 (430)
T ss_pred             EEEEECCCCCCc-eEEe--cCCCceeeeeEC-CCCCEEEEEEcCCCCCEEEEEECCCCCEEE--cc--------CCCCCc
Confidence            577888875543 3333  455788999999 678888766543   368899998765311  11        111234


Q ss_pred             EEEEEecCCCEEEEEe-CCC--cEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCC--cEEEEECCCCCc
Q 004969          554 TSVHVNSMDELFLASG-YSK--NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQ--DVKLWDLRQKPI  628 (721)
Q Consensus       554 ~sv~~sp~~~~lls~g-~Dg--~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~Dg--tIrIWDlrs~~~  628 (721)
                      ....|+|++..++... .+|  .|++||+.+++... +.. +........|+|+|..++++...+|  .|.+||+.+++.
T Consensus       246 ~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~-~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~  323 (430)
T PRK00178        246 GAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTN-HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA  323 (430)
T ss_pred             CCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-ccc-CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            5688999999887544 344  68889999876543 443 5555667899999944444544444  577778877754


Q ss_pred             eeEEEecCCCCeEEEEEecCCCEEEEEeCCC---cEEEEEcCCCccccc--ccCeEEEEECCCCC
Q 004969          629 QPCYTASSSKGNVMVCFSPDDHYLLGKGSGT---SMFVQSLRGDPFRDF--NMSILAAYTRPSSK  688 (721)
Q Consensus       629 ~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg---~I~VWDl~g~~l~~~--~~~V~~v~fsP~~~  688 (721)
                      ..+ ...+ .......|+|||++++..+.++   .|.+||+.+...+..  ........|+|+++
T Consensus       324 ~~l-t~~~-~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spdg~  386 (430)
T PRK00178        324 ERV-TFVG-NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESPSVAPNGT  386 (430)
T ss_pred             EEe-ecCC-CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCCCCCceECCCCC
Confidence            333 2222 1222578999999998776433   578889875433322  11223458999994

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.83  E-value=6.6e-08  Score=99.02  Aligned_cols=199  Identities=13%  Similarity=0.066  Sum_probs=132.9

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI  535 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~  535 (721)
                      ..++.|++ .+.-++++-.+|.+.+-+...+.........+|.-.++-.+|+..+++.+.+||+||.+..||++..+.- 
T Consensus       124 ~lslD~~~-~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~-  201 (339)
T KOG0280|consen  124 ALSLDIST-SGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTF-  201 (339)
T ss_pred             eeEEEeec-cCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcce-
Confidence            35788999 7788999999999997666555554422234899999999999888999999999999999999943320 


Q ss_pred             cccccCcceeEeccCCCeEEEEEecC-CCEEEEEeCCCcEEEEECC-CCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969          536 RGMHYGAGTVTFDEFDQLTSVHVNSM-DELFLASGYSKNIALYDIN-SGRRLQVFADMHKEHINVVKFSNHSPSIFATSS  613 (721)
Q Consensus       536 ~~~~~~~~~~~~~~~~~V~sv~~sp~-~~~lls~g~Dg~IrlWDl~-s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs  613 (721)
                            .......|...|.++.-+|. ..++++|+.|-.|++||.| .++++..-.  -.+.|..+.++|.....++.++
T Consensus       202 ------i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~--v~GGVWRi~~~p~~~~~lL~~C  273 (339)
T KOG0280|consen  202 ------IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK--VGGGVWRIKHHPEIFHRLLAAC  273 (339)
T ss_pred             ------eeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc--cccceEEEEecchhhhHHHHHH
Confidence                  01112345667888887765 4577888889999999999 577776554  5689999999997633344444


Q ss_pred             CCCcEEEEECCCCCce---eEEEecCCCCeE-EEEEecCCCEEEEEe-CCCcEE-EE
Q 004969          614 FDQDVKLWDLRQKPIQ---PCYTASSSKGNV-MVCFSPDDHYLLGKG-SGTSMF-VQ  664 (721)
Q Consensus       614 ~DgtIrIWDlrs~~~~---~~~~~~~~~~~v-sl~fSpdg~~Lasgs-~Dg~I~-VW  664 (721)
                      .-.-.+|-+...+...   .......|..-. ...|.....+++|++ .|..++ +|
T Consensus       274 Mh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~W  330 (339)
T KOG0280|consen  274 MHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLW  330 (339)
T ss_pred             HhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeee
Confidence            4444677777665332   111222222222 233433334566644 355544 55

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=98.82  E-value=5e-08  Score=100.99  Aligned_cols=184  Identities=13%  Similarity=0.180  Sum_probs=126.1

Q ss_pred             EEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCE-EEEEeCCCeEEEEEcCCCCCcccc
Q 004969          459 FEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSK-LIAGSDNGSLKLYDIRHMPPSIRG  537 (721)
Q Consensus       459 lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~-LaSgs~DGtVrIWDi~~~~~~~~~  537 (721)
                      ..|+| +|+++|+.+.- .+.|-|.++-+..+.+..   -+.|.-+.|. .+..+ |.....|+.|.+|++...+-    
T Consensus        14 c~fSp-~g~yiAs~~~y-rlviRd~~tlq~~qlf~c---ldki~yieW~-ads~~ilC~~yk~~~vqvwsl~Qpew----   83 (447)
T KOG4497|consen   14 CSFSP-CGNYIASLSRY-RLVIRDSETLQLHQLFLC---LDKIVYIEWK-ADSCHILCVAYKDPKVQVWSLVQPEW----   83 (447)
T ss_pred             eeECC-CCCeeeeeeee-EEEEeccchhhHHHHHHH---HHHhhheeee-ccceeeeeeeeccceEEEEEeeccee----
Confidence            56899 99999999866 788888877655443321   3567778897 55544 45567889999999987442    


Q ss_pred             cccCcceeEe-ccCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC-
Q 004969          538 MHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGY-SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF-  614 (721)
Q Consensus       538 ~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~-Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~-  614 (721)
                            .... .+..++.+++|+|+|+.++..+. |-.|.+|.+.+.+....-.  .+..+..++|+|+| ++.+.++. 
T Consensus        84 ------~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~--pK~~~kg~~f~~dg-~f~ai~sRr  154 (447)
T KOG4497|consen   84 ------YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH--PKTNVKGYAFHPDG-QFCAILSRR  154 (447)
T ss_pred             ------EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc--cccCceeEEECCCC-ceeeeeecc
Confidence                  1122 23456899999999988887775 8899999999876554322  33456788999998 56555442 


Q ss_pred             -----------------------------------CCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCC
Q 004969          615 -----------------------------------DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGT  659 (721)
Q Consensus       615 -----------------------------------DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg  659 (721)
                                                         +..+-+||.--.  ..++..+-..+.-.++|+|.+++|++|+.|+
T Consensus       155 DCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le--ykv~aYe~~lG~k~v~wsP~~qflavGsyD~  232 (447)
T KOG4497|consen  155 DCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE--YKVYAYERGLGLKFVEWSPCNQFLAVGSYDQ  232 (447)
T ss_pred             cHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhh--heeeeeeeccceeEEEeccccceEEeeccch
Confidence                                               122444543322  1122223334455789999999999999999


Q ss_pred             cEEE
Q 004969          660 SMFV  663 (721)
Q Consensus       660 ~I~V  663 (721)
                      .++|
T Consensus       233 ~lrv  236 (447)
T KOG4497|consen  233 MLRV  236 (447)
T ss_pred             hhhh
Confidence            8876

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.79  E-value=1.1e-06  Score=97.09  Aligned_cols=226  Identities=12%  Similarity=0.169  Sum_probs=136.9

Q ss_pred             EEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEe-CCCeEEEEEcCCCCCccc
Q 004969          458 QFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS-DNGSLKLYDIRHMPPSIR  536 (721)
Q Consensus       458 ~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs-~DGtVrIWDi~~~~~~~~  536 (721)
                      .+.|+| |++++.+.+.||.|.++|+.+++.+..++.   .....+++++ +++++++++. .++.+.++|.++.+.. +
T Consensus        41 ~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~---G~~~~~i~~s-~DG~~~~v~n~~~~~v~v~D~~tle~v-~  114 (369)
T PF02239_consen   41 GLKFSP-DGRYLYVANRDGTVSVIDLATGKVVATIKV---GGNPRGIAVS-PDGKYVYVANYEPGTVSVIDAETLEPV-K  114 (369)
T ss_dssp             EEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE----SSEEEEEEE---TTTEEEEEEEETTEEEEEETTT--EE-E
T ss_pred             EEEecC-CCCEEEEEcCCCeEEEEECCcccEEEEEec---CCCcceEEEc-CCCCEEEEEecCCCceeEeccccccce-e
Confidence            467899 999999999999999999999999999874   2456789998 7888887665 6899999999986542 1


Q ss_pred             ccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC-CcEEEEECCCCcEEE--EEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969          537 GMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS-KNIALYDINSGRRLQ--VFADMHKEHINVVKFSNHSPSIFATSS  613 (721)
Q Consensus       537 ~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D-g~IrlWDl~s~~~v~--~l~~~h~~~V~sI~fsPdg~~lLaSgs  613 (721)
                      ....... ..-.....+.++..++..+.++..-.| +.|.+.|....+.+.  .+.  .........|+|++.+++++..
T Consensus       115 ~I~~~~~-~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~--~g~~~~D~~~dpdgry~~va~~  191 (369)
T PF02239_consen  115 TIPTGGM-PVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK--VGRFPHDGGFDPDGRYFLVAAN  191 (369)
T ss_dssp             EEE--EE--TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE----TTEEEEEE-TTSSEEEEEEG
T ss_pred             ecccccc-cccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeec--ccccccccccCcccceeeeccc
Confidence            1110000 000022346777777888877777664 889888987765443  332  4566778999999944455555


Q ss_pred             CCCcEEEEECCCCCceeEE-----------------------------------------------------EecCCCCe
Q 004969          614 FDQDVKLWDLRQKPIQPCY-----------------------------------------------------TASSSKGN  640 (721)
Q Consensus       614 ~DgtIrIWDlrs~~~~~~~-----------------------------------------------------~~~~~~~~  640 (721)
                      ....|-++|..+++.....                                                     ++....+.
T Consensus       192 ~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g  271 (369)
T PF02239_consen  192 GSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG  271 (369)
T ss_dssp             GGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS
T ss_pred             ccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc
Confidence            6677888887764321110                                                     00011112


Q ss_pred             EEEEEecCCCEEEEE----eCCCcEEEEEcCCCc-cccc----ccCeEEEEECCCCCcccc
Q 004969          641 VMVCFSPDDHYLLGK----GSGTSMFVQSLRGDP-FRDF----NMSILAAYTRPSSKSEIV  692 (721)
Q Consensus       641 vsl~fSpdg~~Lasg----s~Dg~I~VWDl~g~~-l~~~----~~~V~~v~fsP~~~~~~v  692 (721)
                      .-+..+|+++++.+.    ...+.|.++|.+.-. .+.+    ...+..+.|+|+|+...+
T Consensus       272 lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~v  332 (369)
T PF02239_consen  272 LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWV  332 (369)
T ss_dssp             --EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEE
T ss_pred             ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEE
Confidence            345779999999887    445789999988322 2222    235999999999964333

...

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.79  E-value=4.8e-06  Score=91.17  Aligned_cols=229  Identities=13%  Similarity=0.125  Sum_probs=145.0

Q ss_pred             eEEEEEeCCCCCEEEEEEC----CCeEEEEECCCC--eE--EEEeecCCCCCCeEEEEEeeCCCCEEEEEe-CCCeEEEE
Q 004969          456 PRQFEYHPSISCLMVFGTL----DGEIVVVNHENE--NI--VSYIPSFGAMNSVLGLCWLKKYPSKLIAGS-DNGSLKLY  526 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~----DG~I~IWdl~tg--~~--i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs-~DGtVrIW  526 (721)
                      +.-++++| ++++|.+...    +|.|..|.+...  +.  +.....  .......++.. +++++|+++. .+|+|.++
T Consensus        39 Ps~l~~~~-~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~--~g~~p~~i~~~-~~g~~l~vany~~g~v~v~  114 (345)
T PF10282_consen   39 PSWLAVSP-DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS--GGSSPCHIAVD-PDGRFLYVANYGGGSVSVF  114 (345)
T ss_dssp             ECCEEE-T-TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE--SSSCEEEEEEC-TTSSEEEEEETTTTEEEEE
T ss_pred             CceEEEEe-CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc--CCCCcEEEEEe-cCCCEEEEEEccCCeEEEE
Confidence            66789999 8888888776    579999988753  33  333321  23455678887 6788877776 58999999


Q ss_pred             EcCCCCCcccc--cccCccee---EeccCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCc--EE--EEEccccCCCe
Q 004969          527 DIRHMPPSIRG--MHYGAGTV---TFDEFDQLTSVHVNSMDELFLASGY-SKNIALYDINSGR--RL--QVFADMHKEHI  596 (721)
Q Consensus       527 Di~~~~~~~~~--~~~~~~~~---~~~~~~~V~sv~~sp~~~~lls~g~-Dg~IrlWDl~s~~--~v--~~l~~~h~~~V  596 (721)
                      ++.........  ...+.+..   ..+......++.++|+++++++... ...|++|++....  ..  ..+........
T Consensus       115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GP  194 (345)
T PF10282_consen  115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGP  194 (345)
T ss_dssp             EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSE
T ss_pred             EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCC
Confidence            99874221111  00000000   0012234789999999999998874 4579999998654  32  23332356778


Q ss_pred             EEEEEcCCCCcEEEEEECCCcEEEEECC--CCCceeEEEec-------CCCCeEEEEEecCCCEEEEEe-CCCcEEEEEc
Q 004969          597 NVVKFSNHSPSIFATSSFDQDVKLWDLR--QKPIQPCYTAS-------SSKGNVMVCFSPDDHYLLGKG-SGTSMFVQSL  666 (721)
Q Consensus       597 ~sI~fsPdg~~lLaSgs~DgtIrIWDlr--s~~~~~~~~~~-------~~~~~vsl~fSpdg~~Lasgs-~Dg~I~VWDl  666 (721)
                      ..+.|+|++....++...+++|.+|++.  ++....+....       +......++++|||++|+++. ..+.|.+|++
T Consensus       195 Rh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~  274 (345)
T PF10282_consen  195 RHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDL  274 (345)
T ss_dssp             EEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEE
T ss_pred             cEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEE
Confidence            9999999996666677778999999988  44333322221       111334799999999998876 4668999999


Q ss_pred             CCC--ccccc------ccCeEEEEECCCCC
Q 004969          667 RGD--PFRDF------NMSILAAYTRPSSK  688 (721)
Q Consensus       667 ~g~--~l~~~------~~~V~~v~fsP~~~  688 (721)
                      ...  .+...      ......++++|+++
T Consensus       275 d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~  304 (345)
T PF10282_consen  275 DPATGTLTLVQTVPTGGKFPRHFAFSPDGR  304 (345)
T ss_dssp             CTTTTTEEEEEEEEESSSSEEEEEE-TTSS
T ss_pred             ecCCCceEEEEEEeCCCCCccEEEEeCCCC
Confidence            522  22211      23478899999993

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.75  E-value=1.6e-06  Score=98.37  Aligned_cols=194  Identities=12%  Similarity=0.074  Sum_probs=118.5

Q ss_pred             eEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeC-CC--eEEEEEcCCCCCcccccccCcceeEeccCCCe
Q 004969          477 EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD-NG--SLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQL  553 (721)
Q Consensus       477 ~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~-DG--tVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V  553 (721)
                      .|.++|...... +.+.  .+...+.+..|+ ++++.|+..+. ++  .|.+||+.+++....  .        ......
T Consensus       199 ~l~i~d~dG~~~-~~l~--~~~~~~~~p~wS-PDG~~La~~s~~~g~~~L~~~dl~tg~~~~l--t--------~~~g~~  264 (448)
T PRK04792        199 QLMIADYDGYNE-QMLL--RSPEPLMSPAWS-PDGRKLAYVSFENRKAEIFVQDIYTQVREKV--T--------SFPGIN  264 (448)
T ss_pred             EEEEEeCCCCCc-eEee--cCCCcccCceEC-CCCCEEEEEEecCCCcEEEEEECCCCCeEEe--c--------CCCCCc
Confidence            677778764433 3333  445688899998 67887776654 33  588889887653110  0        011223


Q ss_pred             EEEEEecCCCEEEEE-eCCCc--EEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCC--cEEEEECCCCCc
Q 004969          554 TSVHVNSMDELFLAS-GYSKN--IALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQ--DVKLWDLRQKPI  628 (721)
Q Consensus       554 ~sv~~sp~~~~lls~-g~Dg~--IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~Dg--tIrIWDlrs~~~  628 (721)
                      ....|+|++..++.+ ..++.  |.+||+.+++... +.. +.......+|+|+|..+++++..++  .|.++|+.+++.
T Consensus       265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt~-~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~  342 (448)
T PRK04792        265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR-ITR-HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV  342 (448)
T ss_pred             CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE-Ccc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            467899999988765 44554  8888998776543 332 5556677899999954444544444  466678877654


Q ss_pred             eeEEEecCCCCeEEEEEecCCCEEEEEeC-CC--cEEEEEcCCCcccccc--cCeEEEEECCCCC
Q 004969          629 QPCYTASSSKGNVMVCFSPDDHYLLGKGS-GT--SMFVQSLRGDPFRDFN--MSILAAYTRPSSK  688 (721)
Q Consensus       629 ~~~~~~~~~~~~vsl~fSpdg~~Lasgs~-Dg--~I~VWDl~g~~l~~~~--~~V~~v~fsP~~~  688 (721)
                      ..+ +..+.. ....+|+|||++|+..+. ++  .|.++|+.+.......  .......|+|+++
T Consensus       343 ~~L-t~~g~~-~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~  405 (448)
T PRK04792        343 SRL-TFEGEQ-NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGT  405 (448)
T ss_pred             EEE-ecCCCC-CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCCCCCceECCCCC
Confidence            332 222222 235789999999987654 33  4556777644332221  1122347999994

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.74  E-value=2.1e-06  Score=106.36  Aligned_cols=211  Identities=15%  Similarity=0.186  Sum_probs=137.8

Q ss_pred             CeEEEEEeCCCCCE-EEEEECCCeEEEEECCCCeEEEEeecCCC---------------CCCeEEEEEeeCCCCEEEEEe
Q 004969          455 RPRQFEYHPSISCL-MVFGTLDGEIVVVNHENENIVSYIPSFGA---------------MNSVLGLCWLKKYPSKLIAGS  518 (721)
Q Consensus       455 ~V~~lafsP~dg~~-LasGs~DG~I~IWdl~tg~~i~~l~~~~H---------------~~~V~sl~fsp~d~~~LaSgs  518 (721)
                      ++..+++++ +++. +++-...+.|+++|..++.. .++...+.               -...++++++|.++..+++.+
T Consensus       625 ~P~GIavd~-~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~  702 (1057)
T PLN02919        625 RPQGLAYNA-KKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA  702 (1057)
T ss_pred             CCcEEEEeC-CCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC
Confidence            588999999 6664 44455567899999987653 33322111               123468899855677788888


Q ss_pred             CCCeEEEEEcCCCCCcccccccCc----c-eeEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEcc--
Q 004969          519 DNGSLKLYDIRHMPPSIRGMHYGA----G-TVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFAD--  590 (721)
Q Consensus       519 ~DGtVrIWDi~~~~~~~~~~~~~~----~-~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~v~~l~~--  590 (721)
                      .++.|++||..++......-.+..    . ............++++|+++.++++. .++.|++||+.++.......+  
T Consensus       703 ~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~  782 (1057)
T PLN02919        703 GQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDP  782 (1057)
T ss_pred             CCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccc
Confidence            899999999877543111000000    0 00000113357899999998666555 578999999987653211100  


Q ss_pred             ----------c--------cCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCC-------------CC
Q 004969          591 ----------M--------HKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSS-------------KG  639 (721)
Q Consensus       591 ----------~--------h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~-------------~~  639 (721)
                                .        .-....+++++++| .++++-+.++.|++||..++....+.. .+.             ..
T Consensus       783 ~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~v~tiaG-~G~~G~~dG~~~~a~l~~  860 (1057)
T PLN02919        783 TFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG-QIYVADSYNHKIKKLDPATKRVTTLAG-TGKAGFKDGKALKAQLSE  860 (1057)
T ss_pred             ccCcccccccCCCCchhhhhccCCceeeEeCCC-cEEEEECCCCEEEEEECCCCeEEEEec-cCCcCCCCCcccccccCC
Confidence                      0        01134688999999 788888999999999998875432221 110             12


Q ss_pred             eEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004969          640 NVMVCFSPDDHYLLGKGSGTSMFVQSLRGD  669 (721)
Q Consensus       640 ~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~  669 (721)
                      +..++++++|+.+++-+.++.|++||+...
T Consensus       861 P~GIavd~dG~lyVaDt~Nn~Irvid~~~~  890 (1057)
T PLN02919        861 PAGLALGENGRLFVADTNNSLIRYLDLNKG  890 (1057)
T ss_pred             ceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence            447899999998888888999999999743

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.74  E-value=2e-07  Score=104.39  Aligned_cols=228  Identities=14%  Similarity=0.116  Sum_probs=159.5

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEE-------------EEeecCCCCCCeEEEEEeeCCCCEEEEEeCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIV-------------SYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG  521 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i-------------~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DG  521 (721)
                      ...|++|+. ...++|+|+.||.++|..+.+...-             ......||...|.-+.|+ .....|-|...+|
T Consensus        16 kL~c~~WNk-e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWN-e~~QKLTtSDt~G   93 (1189)
T KOG2041|consen   16 KLHCAEWNK-ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWN-ENNQKLTTSDTSG   93 (1189)
T ss_pred             eEEEEEEcc-cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEec-cccccccccCCCc
Confidence            478999999 8899999999999999987643210             011124999999999998 6778898999999


Q ss_pred             eEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEE--EEccccCCCeEEE
Q 004969          522 SLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQ--VFADMHKEHINVV  599 (721)
Q Consensus       522 tVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~--~l~~~h~~~V~sI  599 (721)
                      .|.+|-+-.+...-.       .+.-..++.|.+++|+.+|..+...-.||.|.+=.+. |..++  .+++   .....+
T Consensus        94 lIiVWmlykgsW~EE-------MiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd-GNRIwgKeLkg---~~l~hv  162 (1189)
T KOG2041|consen   94 LIIVWMLYKGSWCEE-------MINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD-GNRIWGKELKG---QLLAHV  162 (1189)
T ss_pred             eEEEEeeecccHHHH-------HhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec-cceecchhcch---heccce
Confidence            999999987654211       1122234558999999999999999899988776665 33332  2332   234468


Q ss_pred             EEcCCCCcEEEEEECCCcEEEEECCCCCc-----eeEEEecCC----CCeE-EEEEe--------cCCCEEEEEeCCCcE
Q 004969          600 KFSNHSPSIFATSSFDQDVKLWDLRQKPI-----QPCYTASSS----KGNV-MVCFS--------PDDHYLLGKGSGTSM  661 (721)
Q Consensus       600 ~fsPdg~~lLaSgs~DgtIrIWDlrs~~~-----~~~~~~~~~----~~~v-sl~fS--------pdg~~Lasgs~Dg~I  661 (721)
                      .|++|. ..++.+-..|.+++||....-.     .......+.    ...+ .+.|.        ||...++++-.+|.+
T Consensus       163 ~ws~D~-~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~  241 (1189)
T KOG2041|consen  163 LWSEDL-EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRM  241 (1189)
T ss_pred             eecccH-HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCcee
Confidence            899998 6777777889999999865311     111111110    0111 34442        588899999999988


Q ss_pred             EEEEcCCCc---ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          662 FVQSLRGDP---FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       662 ~VWDl~g~~---l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      .+-.-..++   +....+.+..+.|+|+|       .+||.||.+
T Consensus       242 QiMR~eND~~Pvv~dtgm~~vgakWnh~G-------~vLAvcG~~  279 (1189)
T KOG2041|consen  242 QIMRSENDPEPVVVDTGMKIVGAKWNHNG-------AVLAVCGND  279 (1189)
T ss_pred             hhhhhcCCCCCeEEecccEeecceecCCC-------cEEEEccCc
Confidence            776544332   23335688999999999       999999987

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.73  E-value=2.1e-07  Score=97.09  Aligned_cols=205  Identities=16%  Similarity=0.222  Sum_probs=133.6

Q ss_pred             CeEEEEEeCC-CCCEEEEEECCCeEEEEECCCCeEE-----------------------------------EEeecCCCC
Q 004969          455 RPRQFEYHPS-ISCLMVFGTLDGEIVVVNHENENIV-----------------------------------SYIPSFGAM  498 (721)
Q Consensus       455 ~V~~lafsP~-dg~~LasGs~DG~I~IWdl~tg~~i-----------------------------------~~l~~~~H~  498 (721)
                      .|..+.|.++ +...++..+.|.+|++|-+......                                   +.+ ..+|.
T Consensus        86 KinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~-aNaHt  164 (433)
T KOG1354|consen   86 KINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVY-ANAHT  164 (433)
T ss_pred             hhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeec-cccce
Confidence            3677888884 4456778889999999987532110                                   111 13788


Q ss_pred             CCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEec-cCCCeEEEEEecCCC-EEEEEeCCCcEEE
Q 004969          499 NSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFD-EFDQLTSVHVNSMDE-LFLASGYSKNIAL  576 (721)
Q Consensus       499 ~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~-~~~~V~sv~~sp~~~-~lls~g~Dg~Irl  576 (721)
                      -.|.++.++ .+...++++ +|=.|.+|+++-.......+.-.+  ..+. -..-|++..|||... .|+.+++.|+|++
T Consensus       165 yhiNSIS~N-sD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP--~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL  240 (433)
T KOG1354|consen  165 YHINSISVN-SDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKP--ANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL  240 (433)
T ss_pred             eEeeeeeec-CccceEeec-cceeeeeccccccCCceeEEEccc--cCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence            889999998 677777775 567899999987544222111000  0000 112378889999764 5566677899999


Q ss_pred             EECCCCcE----EEEEc-----------cccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCC---
Q 004969          577 YDINSGRR----LQVFA-----------DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSK---  638 (721)
Q Consensus       577 WDl~s~~~----v~~l~-----------~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~---  638 (721)
                      -|++....    .+.|.           ..--..|..+.|++.| +++++-.. -+|++||+.... .++.+.+.|.   
T Consensus       241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG-ryilsRDy-ltvk~wD~nme~-~pv~t~~vh~~lr  317 (433)
T KOG1354|consen  241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG-RYILSRDY-LTVKLWDLNMEA-KPVETYPVHEYLR  317 (433)
T ss_pred             eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCC-cEEEEecc-ceeEEEeccccC-CcceEEeehHhHH
Confidence            99995321    11111           0123468889999999 78876543 689999995321 2232222221   


Q ss_pred             -------------CeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          639 -------------GNVMVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       639 -------------~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                                   ....++|+.++.+++||+..+..+++++.
T Consensus       318 ~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~  359 (433)
T KOG1354|consen  318 SKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLA  359 (433)
T ss_pred             HHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCC
Confidence                         11258999999999999999999999954

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.72  E-value=6.8e-06  Score=89.99  Aligned_cols=207  Identities=11%  Similarity=0.163  Sum_probs=136.2

Q ss_pred             CeEEEEEeCCCCCEEEEEEC-CCeEEEEECCC-CeEEEE---eec--------CCCCCCeEEEEEeeCCCCEEEEEe-CC
Q 004969          455 RPRQFEYHPSISCLMVFGTL-DGEIVVVNHEN-ENIVSY---IPS--------FGAMNSVLGLCWLKKYPSKLIAGS-DN  520 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~-DG~I~IWdl~t-g~~i~~---l~~--------~~H~~~V~sl~fsp~d~~~LaSgs-~D  520 (721)
                      .+..++++| ++++++++.. +|.|.++++.. |.....   +..        ........++.|+ ++++++++.. ..
T Consensus        88 ~p~~i~~~~-~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~-pdg~~v~v~dlG~  165 (345)
T PF10282_consen   88 SPCHIAVDP-DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFS-PDGRFVYVPDLGA  165 (345)
T ss_dssp             CEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE--TTSSEEEEEETTT
T ss_pred             CcEEEEEec-CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEEC-CCCCEEEEEecCC
Confidence            366799999 8888888764 89999999986 444332   211        0123457889998 6788777654 34


Q ss_pred             CeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-CCcEEEEECC--CCcE--EEEEcc---cc
Q 004969          521 GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-SKNIALYDIN--SGRR--LQVFAD---MH  592 (721)
Q Consensus       521 GtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-Dg~IrlWDl~--s~~~--v~~l~~---~h  592 (721)
                      ..|.+|++......+..    ...+.......-..+.|+|++..+++... +++|.++++.  ++..  +.....   ..
T Consensus       166 D~v~~~~~~~~~~~l~~----~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~  241 (345)
T PF10282_consen  166 DRVYVYDIDDDTGKLTP----VDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF  241 (345)
T ss_dssp             TEEEEEEE-TTS-TEEE----EEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred             CEEEEEEEeCCCceEEE----eeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence            58999999875532211    11223333345689999999999988875 7889999998  4432  222221   11


Q ss_pred             --CCCeEEEEEcCCCCcEEEEEECCCcEEEEECC--CCCceeEEEecC-CCCeEEEEEecCCCEEEEEe-CCCcEEEEEc
Q 004969          593 --KEHINVVKFSNHSPSIFATSSFDQDVKLWDLR--QKPIQPCYTASS-SKGNVMVCFSPDDHYLLGKG-SGTSMFVQSL  666 (721)
Q Consensus       593 --~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlr--s~~~~~~~~~~~-~~~~vsl~fSpdg~~Lasgs-~Dg~I~VWDl  666 (721)
                        ......|+++|+|..++++....++|-+|++.  ++....+..... ...+..++++|+|++|+++. .++.|.+|++
T Consensus       242 ~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~  321 (345)
T PF10282_consen  242 TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI  321 (345)
T ss_dssp             CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred             cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence              22678999999995556666678899999993  345544444433 33466899999999999887 5668999987


Q ss_pred             C
Q 004969          667 R  667 (721)
Q Consensus       667 ~  667 (721)
                      .
T Consensus       322 d  322 (345)
T PF10282_consen  322 D  322 (345)
T ss_dssp             E
T ss_pred             e
Confidence            5

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.72  E-value=7.5e-07  Score=98.85  Aligned_cols=148  Identities=10%  Similarity=0.209  Sum_probs=124.5

Q ss_pred             CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcce
Q 004969          465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGT  544 (721)
Q Consensus       465 dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~  544 (721)
                      +...++-|...|.|.+|++..|+....+...+|.+.|.++.|+ .+...|.|++.|+.+..|+.......         .
T Consensus        69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~-~~~~ciyS~~ad~~v~~~~~~~~~~~---------~  138 (541)
T KOG4547|consen   69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDA-QRLGCIYSVGADLKVVYILEKEKVII---------R  138 (541)
T ss_pred             CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecc-cccCceEecCCceeEEEEecccceee---------e
Confidence            5678899999999999999999999999877999999999997 77889999999999999999885431         1


Q ss_pred             eEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCC-----CCcEEEEEECCCcEE
Q 004969          545 VTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNH-----SPSIFATSSFDQDVK  619 (721)
Q Consensus       545 ~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPd-----g~~lLaSgs~DgtIr  619 (721)
                      ........+.+++++|++..+++++  +.|++||+++++.+..|.| |.++|++++|--.     |.+++.+...+..+.
T Consensus       139 ~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftg-h~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~  215 (541)
T KOG4547|consen  139 IWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTG-HGSPVRTLSFTTLIDGIIGKYVLSSAAAERGIT  215 (541)
T ss_pred             eeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecC-CCcceEEEEEEEeccccccceeeecccccccee
Confidence            1112234578999999988888877  6899999999999999998 9999999999877     545666667777888


Q ss_pred             EEECCC
Q 004969          620 LWDLRQ  625 (721)
Q Consensus       620 IWDlrs  625 (721)
                      +|-++.
T Consensus       216 ~w~v~~  221 (541)
T KOG4547|consen  216 VWVVEK  221 (541)
T ss_pred             EEEEEc
Confidence            998765

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.71  E-value=7.5e-08  Score=108.21  Aligned_cols=160  Identities=19%  Similarity=0.250  Sum_probs=119.9

Q ss_pred             eEEEEEeCC--CCCEEEEEECCCeEEEEECCCCe-EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969          456 PRQFEYHPS--ISCLMVFGTLDGEIVVVNHENEN-IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP  532 (721)
Q Consensus       456 V~~lafsP~--dg~~LasGs~DG~I~IWdl~tg~-~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~  532 (721)
                      |-.+.|+|+  ....+++ ...-.-.+|++.... ..-.+-.+||..+|+++.|+|+.+..+++++-|..|..||++...
T Consensus        70 vad~qws~h~a~~~wiVs-ts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~  148 (1081)
T KOG0309|consen   70 VADVQWSPHPAKPYWIVS-TSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH  148 (1081)
T ss_pred             hcceecccCCCCceeEEe-cCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC
Confidence            445667763  2334444 444456789886322 112233359999999999999999999999999999999999854


Q ss_pred             CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC-cEEEEEccccCCCeEEEEEcCCCCcEEEE
Q 004969          533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSG-RRLQVFADMHKEHINVVKFSNHSPSIFAT  611 (721)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~-~~v~~l~~~h~~~V~sI~fsPdg~~lLaS  611 (721)
                      ..+...        ..-......|+|+-.++.+++.+..+.|++||.+.| .++..+++ |...|+.+.|+......+.+
T Consensus       149 ~p~ys~--------~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~-~vs~vn~~~fnr~~~s~~~s  219 (1081)
T KOG0309|consen  149 RPFYST--------SSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKG-HVSSVNSIDFNRFKYSEIMS  219 (1081)
T ss_pred             cceeee--------ecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecc-cceeeehHHHhhhhhhhhcc
Confidence            422111        112234678899999999999999999999999975 56777887 99999999998765567889


Q ss_pred             EECCCcEEEEECCC
Q 004969          612 SSFDQDVKLWDLRQ  625 (721)
Q Consensus       612 gs~DgtIrIWDlrs  625 (721)
                      ++.||+|+.||...
T Consensus       220 ~~~d~tvkfw~y~k  233 (1081)
T KOG0309|consen  220 SSNDGTVKFWDYSK  233 (1081)
T ss_pred             cCCCCceeeecccc
Confidence            99999999999764

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.67  E-value=2.3e-07  Score=98.74  Aligned_cols=162  Identities=12%  Similarity=0.125  Sum_probs=114.5

Q ss_pred             cCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe----EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcC
Q 004969          454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN----IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIR  529 (721)
Q Consensus       454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~----~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~  529 (721)
                      .++..+..+| ++.++|++..+....+++.....    ............++..+... ......-.+++...+.+|...
T Consensus        63 ~a~~~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~-~sv~v~dkagD~~~~di~s~~  140 (390)
T KOG3914|consen   63 LAPALVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIRED-TSVLVADKAGDVYSFDILSAD  140 (390)
T ss_pred             ccccccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeecc-ceEEEEeecCCceeeeeeccc
Confidence            3455667778 89999999988887777765322    22222221222333333322 122223334555666677666


Q ss_pred             CCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEE
Q 004969          530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIF  609 (721)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lL  609 (721)
                      .+.          ......|-.-++.|+|+|++..++++..|..||+-.......+..|.-+|...|..++.-++.  .|
T Consensus       141 ~~~----------~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~--~L  208 (390)
T KOG3914|consen  141 SGR----------CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY--LL  208 (390)
T ss_pred             ccC----------cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc--ee
Confidence            422          233455667789999999999999999999999998887777888876699999999998764  79


Q ss_pred             EEEECCCcEEEEECCCCCce
Q 004969          610 ATSSFDQDVKLWDLRQKPIQ  629 (721)
Q Consensus       610 aSgs~DgtIrIWDlrs~~~~  629 (721)
                      ++||.|+++++||++++++.
T Consensus       209 lS~sGD~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  209 LSGSGDKTLRLWDITSGKLL  228 (390)
T ss_pred             eecCCCCcEEEEecccCCcc
Confidence            99999999999999998764

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.66  E-value=1e-05  Score=100.43  Aligned_cols=228  Identities=15%  Similarity=0.133  Sum_probs=143.2

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCC------------CCCCeEEEEEeeCCCCEEEE-EeCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFG------------AMNSVLGLCWLKKYPSKLIA-GSDNG  521 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~------------H~~~V~sl~fsp~d~~~LaS-gs~DG  521 (721)
                      .+..+++++.++.++++-+..+.|++||.. |..+..+...+            +-....+|++. ++++.|+. -...+
T Consensus       569 ~P~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd-~~gn~LYVaDt~n~  646 (1057)
T PLN02919        569 FPGKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYN-AKKNLLYVADTENH  646 (1057)
T ss_pred             CCceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEe-CCCCEEEEEeCCCc
Confidence            366799998667788888889999999986 55544443211            11235788887 45565544 44567


Q ss_pred             eEEEEEcCCCCCcccccccC--cc-------eeEeccCCCeEEEEEecCCCEE-EEEeCCCcEEEEECCCCcEEEEEccc
Q 004969          522 SLKLYDIRHMPPSIRGMHYG--AG-------TVTFDEFDQLTSVHVNSMDELF-LASGYSKNIALYDINSGRRLQVFADM  591 (721)
Q Consensus       522 tVrIWDi~~~~~~~~~~~~~--~~-------~~~~~~~~~V~sv~~sp~~~~l-ls~g~Dg~IrlWDl~s~~~v~~l~~~  591 (721)
                      .|+++|..++..  ..+.+.  ..       .........-..++++|+++.+ ++.+.++.|++||..++... .+.+.
T Consensus       647 ~Ir~id~~~~~V--~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~  723 (1057)
T PLN02919        647 ALREIDFVNETV--RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGD  723 (1057)
T ss_pred             eEEEEecCCCEE--EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecC
Confidence            899999876432  111110  00       0000001223678999855555 44456789999999876543 22110


Q ss_pred             --------------cCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEE-----------EecC---------C
Q 004969          592 --------------HKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCY-----------TASS---------S  637 (721)
Q Consensus       592 --------------h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~-----------~~~~---------~  637 (721)
                                    .-.....|+++|++..++++-+.++.|++||+.++......           .+..         .
T Consensus       724 G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l  803 (1057)
T PLN02919        724 GYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLL  803 (1057)
T ss_pred             CccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhc
Confidence                          11245679999998557777788899999999876422111           0000         0


Q ss_pred             CCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCccccc-----------------ccCeEEEEECCCC
Q 004969          638 KGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDF-----------------NMSILAAYTRPSS  687 (721)
Q Consensus       638 ~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~~~-----------------~~~V~~v~fsP~~  687 (721)
                      ..+..++++++|..+++-+.++.|++||..+..+..+                 -.....++++|++
T Consensus       804 ~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG  870 (1057)
T PLN02919        804 QHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENG  870 (1057)
T ss_pred             cCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCC
Confidence            1234789999999888888899999999875433211                 0145678888888

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.61  E-value=9e-06  Score=88.07  Aligned_cols=173  Identities=16%  Similarity=0.186  Sum_probs=129.4

Q ss_pred             EeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCC-eEEEEEcCCCCCcccccc
Q 004969          461 YHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG-SLKLYDIRHMPPSIRGMH  539 (721)
Q Consensus       461 fsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DG-tVrIWDi~~~~~~~~~~~  539 (721)
                      |++.+|++++..|. |...|.+...+-.++.    +|.+.|.-..+. .+++-++.|..|| .+-|+|.++++.      
T Consensus       327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv----~~~~~VrY~r~~-~~~e~~vigt~dgD~l~iyd~~~~e~------  394 (668)
T COG4946         327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQV----GKKGGVRYRRIQ-VDPEGDVIGTNDGDKLGIYDKDGGEV------  394 (668)
T ss_pred             hccCCCcEEEEEec-CcEEEECCCCCeeEEc----CCCCceEEEEEc-cCCcceEEeccCCceEEEEecCCceE------
Confidence            66668999998874 6788888766655443    677788888876 6777889999999 899999998653      


Q ss_pred             cCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCC---
Q 004969          540 YGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQ---  616 (721)
Q Consensus       540 ~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~Dg---  616 (721)
                          ...-..-+.|.++..+++|..++++-....+.++|+.+|.....-+. ..+-|+...|||++ +++|-+--+|   
T Consensus       395 ----kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS-~~~lItdf~~~~ns-r~iAYafP~gy~t  468 (668)
T COG4946         395 ----KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKS-EYGLITDFDWHPNS-RWIAYAFPEGYYT  468 (668)
T ss_pred             ----EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEeccc-ccceeEEEEEcCCc-eeEEEecCcceee
Confidence                11222335689999999999998888888999999999986554443 66789999999999 7888776665   


Q ss_pred             -cEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEE
Q 004969          617 -DVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLL  653 (721)
Q Consensus       617 -tIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~La  653 (721)
                       .|+++|+.+++...+.+-.  ....+-+|.|||++|.
T Consensus       469 q~Iklydm~~~Kiy~vTT~t--a~DfsPaFD~d~ryLY  504 (668)
T COG4946         469 QSIKLYDMDGGKIYDVTTPT--AYDFSPAFDPDGRYLY  504 (668)
T ss_pred             eeEEEEecCCCeEEEecCCc--ccccCcccCCCCcEEE
Confidence             5999999987543332211  1122568888888876

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.60  E-value=1.5e-07  Score=101.91  Aligned_cols=209  Identities=13%  Similarity=0.156  Sum_probs=150.7

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecC-CCCC---CeEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSF-GAMN---SVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH  530 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~-~H~~---~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~  530 (721)
                      +|..++.-|.+..-+.+++.|+.|.-+|+..+.....+... .+..   ....++..|.+...+++|+.|-.+++||.+.
T Consensus       234 ~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~  313 (559)
T KOG1334|consen  234 PVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRR  313 (559)
T ss_pred             ccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccc
Confidence            57788888988899999999999999999876654333322 2333   4678888887888999999999999999986


Q ss_pred             CCCc-ccccccCcceeEe--ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC--C----------cEEEE-EccccCC
Q 004969          531 MPPS-IRGMHYGAGTVTF--DEFDQLTSVHVNSMDELFLASGYSKNIALYDINS--G----------RRLQV-FADMHKE  594 (721)
Q Consensus       531 ~~~~-~~~~~~~~~~~~~--~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s--~----------~~v~~-l~~~h~~  594 (721)
                      -... ......+-.....  .....|++++++.++..++++-.|-.|+++.-..  |          ..++. ++| |..
T Consensus       314 ~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKG-HrN  392 (559)
T KOG1334|consen  314 IDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKG-HRN  392 (559)
T ss_pred             hhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcc-ccc
Confidence            3321 0000000000001  2334699999988888898888899999995443  2          22333 555 754


Q ss_pred             --CeEEEEE-cCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          595 --HINVVKF-SNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       595 --~V~sI~f-sPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                        .|..+-| .|.. .++++||.-|.|.||+-.+++....  +.+....| |+.-+|--..||+.|-|..|+||.-.
T Consensus       393 ~~TVKgVNFfGPrs-EyVvSGSDCGhIFiW~K~t~eii~~--MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~  466 (559)
T KOG1334|consen  393 SRTVKGVNFFGPRS-EYVVSGSDCGHIFIWDKKTGEIIRF--MEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPL  466 (559)
T ss_pred             ccccceeeeccCcc-ceEEecCccceEEEEecchhHHHHH--hhcccceEeccCCCCCCchhhccCCccceeeecCC
Confidence              4666765 4655 7999999999999999998865433  44444466 89999999999999999999999863

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.56  E-value=1e-05  Score=82.33  Aligned_cols=192  Identities=16%  Similarity=0.100  Sum_probs=128.9

Q ss_pred             CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcce
Q 004969          465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGT  544 (721)
Q Consensus       465 dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~  544 (721)
                      ...+||.|+..|...+|...+.+....+-. .|...|+-+.=.-.....+..++.|.++++.+++.+.....        
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd-~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~--------  153 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDGHLYQCD-VSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFA--------  153 (344)
T ss_pred             cccEEEeccccceeeeecccCcccceeeec-ccccchhhhhhhcccccceeeccCCcceeEEEEecCcccce--------
Confidence            457899999999999999986543322221 33333332110001223466788999999999987544211        


Q ss_pred             eEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC-CcE-EEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 004969          545 VTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINS-GRR-LQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWD  622 (721)
Q Consensus       545 ~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s-~~~-v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWD  622 (721)
                      +.+.. -.+.++++++++..+++.|....|-.|.+.. ++. +..........-.+..|+... ..+|++..||++.|||
T Consensus       154 ~h~~~-~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~D  231 (344)
T KOG4532|consen  154 VHNQN-LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND-LQFAVVFQDGTCAIYD  231 (344)
T ss_pred             eeccc-cceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc-ceEEEEecCCcEEEEE
Confidence            11111 1268899999999999999999999998874 333 332322245566788999887 7999999999999999


Q ss_pred             CCCCCce---eEEEecCCCCeE-EEEEecCC--CEEEEEeCCCcEEEEEcC
Q 004969          623 LRQKPIQ---PCYTASSSKGNV-MVCFSPDD--HYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       623 lrs~~~~---~~~~~~~~~~~v-sl~fSpdg--~~Lasgs~Dg~I~VWDl~  667 (721)
                      +|.....   ...+-+.|.+.+ .+.|++-|  ..|+..-.-+.++|-|++
T Consensus       232 VR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R  282 (344)
T KOG4532|consen  232 VRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTR  282 (344)
T ss_pred             ecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcc
Confidence            9975321   122334577777 78999865  355555557788999987

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.55  E-value=1.7e-05  Score=89.42  Aligned_cols=198  Identities=12%  Similarity=0.074  Sum_probs=113.7

Q ss_pred             CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCE---EEEEeCCC--eEEEEEcCCCCCcccccccCcceeEecc
Q 004969          475 DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSK---LIAGSDNG--SLKLYDIRHMPPSIRGMHYGAGTVTFDE  549 (721)
Q Consensus       475 DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~---LaSgs~DG--tVrIWDi~~~~~~~~~~~~~~~~~~~~~  549 (721)
                      .+.|.+.|...+... .+.  .....+..-.|+ ++++.   +++...+|  .|.+.++.+++...        ...  .
T Consensus       164 ~~~l~~~d~dG~~~~-~lt--~~~~~~~sP~wS-PDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------lt~--~  229 (428)
T PRK01029        164 QGELWSVDYDGQNLR-PLT--QEHSLSITPTWM-HIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------ILA--L  229 (428)
T ss_pred             cceEEEEcCCCCCce-Ecc--cCCCCcccceEc-cCCCceEEEEEEccCCCceEEEEECCCCCceE--------eec--C
Confidence            346777777655443 333  233456677898 56653   23444444  57777887754311        111  1


Q ss_pred             CCCeEEEEEecCCCEEEEEeC-----CCcEEEEECCCC---cEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEE
Q 004969          550 FDQLTSVHVNSMDELFLASGY-----SKNIALYDINSG---RRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLW  621 (721)
Q Consensus       550 ~~~V~sv~~sp~~~~lls~g~-----Dg~IrlWDl~s~---~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIW  621 (721)
                      ........|+|+|..++..+.     +..+..|++..+   +..+...+ +.......+|+|||..++.+...+|...+|
T Consensus       230 ~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~-~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly  308 (428)
T PRK01029        230 QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNE-AFGTQGNPSFSPDGTRLVFVSNKDGRPRIY  308 (428)
T ss_pred             CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecC-CCCCcCCeEECCCCCEEEEEECCCCCceEE
Confidence            223356789999999887763     223445777653   33333322 333456789999994344444456765666


Q ss_pred             E--CCCCCceeEEEecCCCCe-EEEEEecCCCEEEEEeCC---CcEEEEEcCCCccccc---ccCeEEEEECCCCC
Q 004969          622 D--LRQKPIQPCYTASSSKGN-VMVCFSPDDHYLLGKGSG---TSMFVQSLRGDPFRDF---NMSILAAYTRPSSK  688 (721)
Q Consensus       622 D--lrs~~~~~~~~~~~~~~~-vsl~fSpdg~~Lasgs~D---g~I~VWDl~g~~l~~~---~~~V~~v~fsP~~~  688 (721)
                      .  +...... ...+...... ....|||||++|+..+.+   ..|++||+.+...+..   ...+....|+|+++
T Consensus       309 ~~~~~~~g~~-~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~  383 (428)
T PRK01029        309 IMQIDPEGQS-PRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSL  383 (428)
T ss_pred             EEECcccccc-eEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCC
Confidence            4  4321111 1222222223 378999999999876543   3689999985543332   23566789999994

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.54  E-value=0.00017  Score=74.74  Aligned_cols=213  Identities=15%  Similarity=0.186  Sum_probs=139.7

Q ss_pred             EEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCccc
Q 004969          457 RQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIR  536 (721)
Q Consensus       457 ~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~  536 (721)
                      -+..|.+.++.++++-...+.|..|+..++.... +..    ....++++..++ ..++.+...+. .++|..+++... 
T Consensus         3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~----~~~~G~~~~~~~-g~l~v~~~~~~-~~~d~~~g~~~~-   74 (246)
T PF08450_consen    3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDL----PGPNGMAFDRPD-GRLYVADSGGI-AVVDPDTGKVTV-   74 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EES----SSEEEEEEECTT-SEEEEEETTCE-EEEETTTTEEEE-
T ss_pred             cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-Eec----CCCceEEEEccC-CEEEEEEcCce-EEEecCCCcEEE-
Confidence            3578998777888887789999999998876543 332    126777776344 55666666544 555888754311 


Q ss_pred             ccccCcceeEec----cCCCeEEEEEecCCCEEEEEeCC--------CcEEEEECCCCcEEEEEccccCCCeEEEEEcCC
Q 004969          537 GMHYGAGTVTFD----EFDQLTSVHVNSMDELFLASGYS--------KNIALYDINSGRRLQVFADMHKEHINVVKFSNH  604 (721)
Q Consensus       537 ~~~~~~~~~~~~----~~~~V~sv~~sp~~~~lls~g~D--------g~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPd  604 (721)
                             .....    .....+.+++.++|...++....        |.|..++.. ++......  .-...+.|+|+|+
T Consensus        75 -------~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~~~pNGi~~s~d  144 (246)
T PF08450_consen   75 -------LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--GLGFPNGIAFSPD  144 (246)
T ss_dssp             -------EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--EESSEEEEEEETT
T ss_pred             -------EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec--CcccccceEECCc
Confidence                   11110    12346899999998877766532        557778877 55444443  4556789999999


Q ss_pred             CCcEEEEEECCCcEEEEECCCCCc-----eeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCcccccc---
Q 004969          605 SPSIFATSSFDQDVKLWDLRQKPI-----QPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDFN---  675 (721)
Q Consensus       605 g~~lLaSgs~DgtIrIWDlrs~~~-----~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~~~~---  675 (721)
                      +..++++-+..+.|..|++.....     .....+....+.. .++++.+|+..++....+.|.+++.+|+.+....   
T Consensus       145 g~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p~  224 (246)
T PF08450_consen  145 GKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIELPV  224 (246)
T ss_dssp             SSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-SS
T ss_pred             chheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcCCC
Confidence            954556778888999999864322     1122333333333 7999999999998888999999999987654442   


Q ss_pred             cCeEEEEE-CCCC
Q 004969          676 MSILAAYT-RPSS  687 (721)
Q Consensus       676 ~~V~~v~f-sP~~  687 (721)
                      ..+.+++| -|+.
T Consensus       225 ~~~t~~~fgg~~~  237 (246)
T PF08450_consen  225 PRPTNCAFGGPDG  237 (246)
T ss_dssp             SSEEEEEEESTTS
T ss_pred             CCEEEEEEECCCC
Confidence            36788888 4554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.51  E-value=1.3e-06  Score=90.18  Aligned_cols=207  Identities=16%  Similarity=0.275  Sum_probs=136.0

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe-E----EEEeecCCC------------CCCeEEEEEeeCCC-CEEEE
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN-I----VSYIPSFGA------------MNSVLGLCWLKKYP-SKLIA  516 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~-~----i~~l~~~~H------------~~~V~sl~fsp~d~-~~LaS  516 (721)
                      .|+++.|.. .|.++++|...|.|.+|.-+... +    ...++  +|            ...|..+.|..+.+ ..++.
T Consensus        28 ~ItaVefd~-tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQ--she~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          28 KITAVEFDE-TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQ--SHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             eeeEEEecc-ccceEeecCCCceEEEeecccccccchhhhhhhc--ccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            489999999 89999999999999999865432 1    11222  33            24688899985443 45667


Q ss_pred             EeCCCeEEEEEcCCCCCcc--------------------------cccccCccee--------EeccCCCeEEEEEecCC
Q 004969          517 GSDNGSLKLYDIRHMPPSI--------------------------RGMHYGAGTV--------TFDEFDQLTSVHVNSMD  562 (721)
Q Consensus       517 gs~DGtVrIWDi~~~~~~~--------------------------~~~~~~~~~~--------~~~~~~~V~sv~~sp~~  562 (721)
                      .+.|.+|++|.+......+                          ..+..+...+        .-.|.-.|.++.++.+.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            7889999999987542110                          0011111111        11244558899998777


Q ss_pred             CEEEEEeCCCcEEEEECCCCc---EEEEEcccc-----CCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCc----ee
Q 004969          563 ELFLASGYSKNIALYDINSGR---RLQVFADMH-----KEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPI----QP  630 (721)
Q Consensus       563 ~~lls~g~Dg~IrlWDl~s~~---~v~~l~~~h-----~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~----~~  630 (721)
                      ..+++ +.|-.|.+|++.-..   .+..++. |     ..-|++..|+|..-+.+.-.+..|.|++-|+|....    ..
T Consensus       185 et~lS-aDdLrINLWnl~i~D~sFnIVDiKP-~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k  262 (460)
T COG5170         185 ETLLS-ADDLRINLWNLEIIDGSFNIVDIKP-HNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK  262 (460)
T ss_pred             heeee-ccceeeeeccccccCCceEEEeccC-ccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence            66665 457789999987432   2222222 3     346889999998767888888899999999995311    11


Q ss_pred             EEE--ecC-----CC---CeE-EEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          631 CYT--ASS-----SK---GNV-MVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       631 ~~~--~~~-----~~---~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                      ++.  ..+     -.   ..+ .+.|+++|+|+++-+ -.++++||++
T Consensus       263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvn  309 (460)
T COG5170         263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVN  309 (460)
T ss_pred             hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecc
Confidence            111  111     01   122 589999999999765 5689999988

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.43  E-value=4.3e-05  Score=83.76  Aligned_cols=209  Identities=14%  Similarity=0.179  Sum_probs=138.8

Q ss_pred             CeEEEEEeCC-CCCEEEE-----EECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEe----------
Q 004969          455 RPRQFEYHPS-ISCLMVF-----GTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS----------  518 (721)
Q Consensus       455 ~V~~lafsP~-dg~~Las-----Gs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs----------  518 (721)
                      .++.++|+|. ++.-||.     +..+++++||.+..+..+.+.....  ..=..+.|+ ..+++++.--          
T Consensus       175 gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk--~~~~qLkW~-~~g~~ll~l~~t~~ksnKsy  251 (561)
T COG5354         175 GILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFK--VSGVQLKWQ-VLGKYLLVLVMTHTKSNKSY  251 (561)
T ss_pred             ceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEe--ecccEEEEe-cCCceEEEEEEEeeecccce
Confidence            3778899994 4444443     4678999999998777665443211  112346776 4555443311          


Q ss_pred             -CCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe--CCCcEEEEECCCCcEEEEEccccCCC
Q 004969          519 -DNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG--YSKNIALYDINSGRRLQVFADMHKEH  595 (721)
Q Consensus       519 -~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g--~Dg~IrlWDl~s~~~v~~l~~~h~~~  595 (721)
                       ....+.++++.....          .+.....++|...+|.|.+..|++.+  .+..+.++|++.. ....+   ....
T Consensus       252 fgesnLyl~~~~e~~i----------~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~---Pe~~  317 (561)
T COG5354         252 FGESNLYLLRITERSI----------PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF---PEQK  317 (561)
T ss_pred             eccceEEEEeeccccc----------ceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec---CCcc
Confidence             124566777764222          22334467899999999999888776  4788999999965 44443   3445


Q ss_pred             eEEEEEcCCCCcEEEEEECC---CcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEe------CCCcEEEEEc
Q 004969          596 INVVKFSNHSPSIFATSSFD---QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKG------SGTSMFVQSL  666 (721)
Q Consensus       596 V~sI~fsPdg~~lLaSgs~D---gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs------~Dg~I~VWDl  666 (721)
                      =+.+.|+|.+ ++++.++.|   |.|.+||..... ...-.+.+. +..-+.|+|||+++.+..      .|+.|+|||+
T Consensus       318 rNT~~fsp~~-r~il~agF~nl~gni~i~~~~~rf-~~~~~~~~~-n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v  394 (561)
T COG5354         318 RNTIFFSPHE-RYILFAGFDNLQGNIEIFDPAGRF-KVAGAFNGL-NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDV  394 (561)
T ss_pred             cccccccCcc-cEEEEecCCccccceEEeccCCce-EEEEEeecC-CceEeeccCCceEEEecCCCcccccCcceEEEEe
Confidence            5678899999 788887766   679999998753 223233332 222468999999998763      3788999999


Q ss_pred             CCCcccccccCeEEEEECCCC
Q 004969          667 RGDPFRDFNMSILAAYTRPSS  687 (721)
Q Consensus       667 ~g~~l~~~~~~V~~v~fsP~~  687 (721)
                      .|.++-    ....+.|.|.+
T Consensus       395 ~g~~~f----el~~~~W~p~~  411 (561)
T COG5354         395 YGAKVF----ELTNITWDPSG  411 (561)
T ss_pred             cCchhh----hhhhccccCCc
Confidence            987643    45567777765

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.42  E-value=3.1e-05  Score=79.91  Aligned_cols=191  Identities=18%  Similarity=0.212  Sum_probs=113.2

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecC-----CCCCCeEEEEEeeCC-----CCEEEEEeCCCeEEE
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSF-----GAMNSVLGLCWLKKY-----PSKLIAGSDNGSLKL  525 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~-----~H~~~V~sl~fsp~d-----~~~LaSgs~DGtVrI  525 (721)
                      =+.++||| |+.+||.+...|+|+++|+.. ..+..++..     .-..+|.++.|.+..     ...|++-..+|.++-
T Consensus        46 WRkl~WSp-D~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S  123 (282)
T PF15492_consen   46 WRKLAWSP-DCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS  123 (282)
T ss_pred             heEEEECC-CCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence            35789999 999999999999999999974 444444321     123578888886443     235777788888888


Q ss_pred             EEcCCCCCcccccccCcce--eEec--cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEE
Q 004969          526 YDIRHMPPSIRGMHYGAGT--VTFD--EFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKF  601 (721)
Q Consensus       526 WDi~~~~~~~~~~~~~~~~--~~~~--~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~f  601 (721)
                      |-+..+...     +....  ..+.  ....|.++.++|..+.+++||....      +.+..    . +....+++-..
T Consensus       124 y~vs~gt~q-----~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~s----~-a~~~GLtaWRi  187 (282)
T PF15492_consen  124 YLVSVGTNQ-----GYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGMS----K-ASSCGLTAWRI  187 (282)
T ss_pred             EEEEcccCC-----cceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCccc----c-ccccCceEEEE
Confidence            887442210     01112  2222  3456999999999999999885322      00000    0 01222332222


Q ss_pred             cCCCCcEE-EEEECCCc------EEEEECCCCCceeEEEec--CCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          602 SNHSPSIF-ATSSFDQD------VKLWDLRQKPIQPCYTAS--SSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       602 sPdg~~lL-aSgs~Dgt------IrIWDlrs~~~~~~~~~~--~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                      -.+.|.+. ++...|+.      -.+|.+-+.   ..+...  ....+..+..||||..||+.+.+|.|.+|++.
T Consensus       188 L~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~---~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iP  259 (282)
T PF15492_consen  188 LSDSPYYKQVTSSEDDITASSKRRGLLRIPSF---KFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIP  259 (282)
T ss_pred             cCCCCcEEEccccCccccccccccceeeccce---eeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecC
Confidence            22222222 22222221      123332221   122221  22334489999999999999999999999987

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.40  E-value=6.8e-06  Score=94.17  Aligned_cols=179  Identities=16%  Similarity=0.223  Sum_probs=125.5

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI  535 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~  535 (721)
                      ++|.+++.   .+++-|+-+|.|++.+.+ |.....+   .|...       ..+|.+++|||.||+|.|-.+-+.+.  
T Consensus        42 is~~av~~---~~~~~GtH~g~v~~~~~~-~~~~~~~---~~s~~-------~~~Gey~asCS~DGkv~I~sl~~~~~--  105 (846)
T KOG2066|consen   42 ISCCAVHD---KFFALGTHRGAVYLTTCQ-GNPKTNF---DHSSS-------ILEGEYVASCSDDGKVVIGSLFTDDE--  105 (846)
T ss_pred             HHHHHhhc---ceeeeccccceEEEEecC-Ccccccc---ccccc-------ccCCceEEEecCCCcEEEeeccCCcc--
Confidence            56667765   899999999999999987 3332222   34333       26799999999999999999888654  


Q ss_pred             cccccCcceeEeccCCCeEEEEEecC-----CCEEEEEeCCCcEEEEECCC---CcEEEEEccccCCCeEEEEEcCCCCc
Q 004969          536 RGMHYGAGTVTFDEFDQLTSVHVNSM-----DELFLASGYSKNIALYDINS---GRRLQVFADMHKEHINVVKFSNHSPS  607 (721)
Q Consensus       536 ~~~~~~~~~~~~~~~~~V~sv~~sp~-----~~~lls~g~Dg~IrlWDl~s---~~~v~~l~~~h~~~V~sI~fsPdg~~  607 (721)
                              ...+....++.+++++|+     ...+++||..| +.++.-+-   ...+ .+.. ..++|.++.|.  | +
T Consensus       106 --------~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~-~eG~I~~i~W~--g-~  171 (846)
T KOG2066|consen  106 --------ITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSE-GEGPIHSIKWR--G-N  171 (846)
T ss_pred             --------ceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeec-CccceEEEEec--C-c
Confidence                    344556678999999997     46788998888 77776441   1222 3333 67899999996  5 6


Q ss_pred             EEEEEECCCcEEEEECCCCCceeEEEecCCC-----CeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          608 IFATSSFDQDVKLWDLRQKPIQPCYTASSSK-----GNVMVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       608 lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~-----~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                      ++|-++.+| |+|||+.+++.......+...     -+-.+.|.++.+.++  |...+|+|..++
T Consensus       172 lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI--GW~d~v~i~~I~  233 (846)
T KOG2066|consen  172 LIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI--GWGDSVKICSIK  233 (846)
T ss_pred             EEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE--ecCCeEEEEEEe
Confidence            899998887 899999887543222222111     111588988776665  334578888877

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.39  E-value=7.9e-07  Score=92.96  Aligned_cols=163  Identities=15%  Similarity=0.204  Sum_probs=117.4

Q ss_pred             EEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccc
Q 004969          460 EYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMH  539 (721)
Q Consensus       460 afsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~  539 (721)
                      +|+-..-.+-++.+.+-.|-+-|+++|.... +   ...+.|.++.|. ..++++..|...|.|...|++.+..     .
T Consensus       218 awSlni~gyhfs~G~sqqv~L~nvetg~~qs-f---~sksDVfAlQf~-~s~nLv~~GcRngeI~~iDLR~rnq-----G  287 (425)
T KOG2695|consen  218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQS-F---QSKSDVFALQFA-GSDNLVFNGCRNGEIFVIDLRCRNQ-----G  287 (425)
T ss_pred             hhhhccceeeecccccceeEEEEeecccccc-c---ccchhHHHHHhc-ccCCeeEecccCCcEEEEEeeeccc-----C
Confidence            5554222222455556678899999875432 3   235679999997 6788999999999999999998532     0


Q ss_pred             cCcceeEeccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCcE---EEEEccccCCCeEE--EEEcCCCCcEEEEEE
Q 004969          540 YGAGTVTFDEFDQLTSVHVNS-MDELFLASGYSKNIALYDINSGRR---LQVFADMHKEHINV--VKFSNHSPSIFATSS  613 (721)
Q Consensus       540 ~~~~~~~~~~~~~V~sv~~sp-~~~~lls~g~Dg~IrlWDl~s~~~---v~~l~~~h~~~V~s--I~fsPdg~~lLaSgs  613 (721)
                      .......+-|...|+++..-. +++.+++++.+|+|++||++.-++   ++++.| |...-.-  +..++.. ..+++++
T Consensus       288 ~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeG-HvN~~a~l~~~v~~ee-g~I~s~G  365 (425)
T KOG2695|consen  288 NGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEG-HVNLSAYLPAHVKEEE-GSIFSVG  365 (425)
T ss_pred             CCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeec-cccccccccccccccc-ceEEEcc
Confidence            122345677888899987755 788999999999999999997666   888886 7554333  2344544 5788899


Q ss_pred             CCCcEEEEECCCCCceeEEEe
Q 004969          614 FDQDVKLWDLRQKPIQPCYTA  634 (721)
Q Consensus       614 ~DgtIrIWDlrs~~~~~~~~~  634 (721)
                      +|...|||.++.+.......+
T Consensus       366 dDcytRiWsl~~ghLl~tipf  386 (425)
T KOG2695|consen  366 DDCYTRIWSLDSGHLLCTIPF  386 (425)
T ss_pred             CeeEEEEEecccCceeeccCC
Confidence            999999999999866444333

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.39  E-value=0.00017  Score=78.55  Aligned_cols=208  Identities=9%  Similarity=0.033  Sum_probs=127.7

Q ss_pred             CeEEEEEeCCCCCEEEEEEC----------CCeEEEEECCCCeEEEEeecCCC-----CCCeEEEEEeeCCCCEEEEEe-
Q 004969          455 RPRQFEYHPSISCLMVFGTL----------DGEIVVVNHENENIVSYIPSFGA-----MNSVLGLCWLKKYPSKLIAGS-  518 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~----------DG~I~IWdl~tg~~i~~l~~~~H-----~~~V~sl~fsp~d~~~LaSgs-  518 (721)
                      +++.+ ++| |++.+.++..          +..|.+||..+++.+..+.....     ......++++ +++++++... 
T Consensus        48 ~P~~~-~sp-Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls-~dgk~l~V~n~  124 (352)
T TIGR02658        48 LPNPV-VAS-DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLT-PDNKTLLFYQF  124 (352)
T ss_pred             CCcee-ECC-CCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEEC-CCCCEEEEecC
Confidence            35555 899 7776666554          78999999999999988875211     1223366777 7888888765 


Q ss_pred             C-CCeEEEEEcCCCCCcccccc--------------------cCcceeEec-------cCCCeEEE---------EEec-
Q 004969          519 D-NGSLKLYDIRHMPPSIRGMH--------------------YGAGTVTFD-------EFDQLTSV---------HVNS-  560 (721)
Q Consensus       519 ~-DGtVrIWDi~~~~~~~~~~~--------------------~~~~~~~~~-------~~~~V~sv---------~~sp-  560 (721)
                      . +..|.+.|+.+++.......                    +....+...       ...++...         .+.+ 
T Consensus       125 ~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~  204 (352)
T TIGR02658       125 SPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNK  204 (352)
T ss_pred             CCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcC
Confidence            3 78999999998654211000                    000000000       00011000         1233 


Q ss_pred             CCCEEEEEeCCCcEEEEECCCC-----cEEEEEcc------ccCCCeEEEEEcCCCCcEEEEEE---------CCCcEEE
Q 004969          561 MDELFLASGYSKNIALYDINSG-----RRLQVFAD------MHKEHINVVKFSNHSPSIFATSS---------FDQDVKL  620 (721)
Q Consensus       561 ~~~~lls~g~Dg~IrlWDl~s~-----~~v~~l~~------~h~~~V~sI~fsPdg~~lLaSgs---------~DgtIrI  620 (721)
                      ++..++++.. |+|.+.|+...     +....+..      -..+.+.-++++|++.++++...         ..+.|.+
T Consensus       205 dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~V  283 (352)
T TIGR02658       205 SGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFV  283 (352)
T ss_pred             CCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEE
Confidence            5555555555 99999996432     33322221      13344556999999955554332         1257999


Q ss_pred             EECCCCCceeEEEecCCCCeEEEEEecCCC-EEEEEe-CCCcEEEEEcCC
Q 004969          621 WDLRQKPIQPCYTASSSKGNVMVCFSPDDH-YLLGKG-SGTSMFVQSLRG  668 (721)
Q Consensus       621 WDlrs~~~~~~~~~~~~~~~vsl~fSpdg~-~Lasgs-~Dg~I~VWDl~g  668 (721)
                      +|..+++.  +..+........++++|||+ +|++.. .++.|.+.|...
T Consensus       284 iD~~t~kv--i~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t  331 (352)
T TIGR02658       284 VDAKTGKR--LRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAET  331 (352)
T ss_pred             EECCCCeE--EEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence            99998854  44444445666899999999 887666 578899999873

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.36  E-value=1.2e-05  Score=84.41  Aligned_cols=194  Identities=12%  Similarity=0.212  Sum_probs=139.8

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCC----CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHEN----ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH  530 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~t----g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~  530 (721)
                      .++++++++ +...|++|-..|++.-+.+..    ....+.+.  .|...|..+-|+ ....++++++.|..+.---.+.
T Consensus        70 ~~~~~~y~~-e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~--~h~~~v~~~if~-~~~e~V~s~~~dk~~~~hc~e~  145 (404)
T KOG1409|consen   70 PCSAMEYVS-ESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYL--AHQARVSAIVFS-LTHEWVLSTGKDKQFAWHCTES  145 (404)
T ss_pred             CceEeeeec-cceEEEEEEecceEEEEEhhhhhhhcchhhhhh--hhhcceeeEEec-CCceeEEEeccccceEEEeecc
Confidence            589999999 889999999999999887642    23334443  889999999997 6788999999998776545554


Q ss_pred             CCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEEC--CCCcEEEEEccccCCCeEEEEEcCCCCcE
Q 004969          531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDI--NSGRRLQVFADMHKEHINVVKFSNHSPSI  608 (721)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl--~s~~~v~~l~~~h~~~V~sI~fsPdg~~l  608 (721)
                      +...        +...+...  .+++.+.-  .+.+.|...|.|.+-.+  ..-.++.++.+ |.+.+.+++|.|.. .+
T Consensus       146 ~~~l--------g~Y~~~~~--~t~~~~d~--~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~-h~~~~~~l~Wd~~~-~~  211 (404)
T KOG1409|consen  146 GNRL--------GGYNFETP--ASALQFDA--LYAFVGDHSGQITMLKLEQNGCQLITTFNG-HTGEVTCLKWDPGQ-RL  211 (404)
T ss_pred             CCcc--------cceEeecc--CCCCceee--EEEEecccccceEEEEEeecCCceEEEEcC-cccceEEEEEcCCC-cE
Confidence            4321        11111111  11111111  13344444555554433  34567788887 99999999999987 79


Q ss_pred             EEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          609 FATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       609 LaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                      +.+|..|..+-+||+-..+. ..+...+|...+ .+.+-+--+.+++.+.||.|-+|+.+
T Consensus       212 LfSg~~d~~vi~wdigg~~g-~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  212 LFSGASDHSVIMWDIGGRKG-TAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             EEeccccCceEEEeccCCcc-eeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence            99999999999999986543 356667777777 67777788899999999999999986

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.36  E-value=0.00051  Score=73.01  Aligned_cols=240  Identities=12%  Similarity=0.120  Sum_probs=147.4

Q ss_pred             CeEEEEEeCCCCCEEEEEEC---CCeEEEEECCC--CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeC-CCeEEEEEc
Q 004969          455 RPRQFEYHPSISCLMVFGTL---DGEIVVVNHEN--ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD-NGSLKLYDI  528 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~---DG~I~IWdl~t--g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~-DGtVrIWDi  528 (721)
                      .|+=++|+| ++++|.++-.   +|.|.-|.+..  |+....-+......+-..++.. .++++++++.. .|.|.++-+
T Consensus        41 nptyl~~~~-~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd-~~g~~vf~AnY~~g~v~v~p~  118 (346)
T COG2706          41 NPTYLAVNP-DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVD-EDGRFVFVANYHSGSVSVYPL  118 (346)
T ss_pred             CCceEEECC-CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEEC-CCCCEEEEEEccCceEEEEEc
Confidence            477899999 8878877755   47787777764  5543221111112333778887 78888888874 589999999


Q ss_pred             CCCCCcc---cccccC-cceeEeccCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCcEEEEEc--cccCCCeEEEEE
Q 004969          529 RHMPPSI---RGMHYG-AGTVTFDEFDQLTSVHVNSMDELFLASGY-SKNIALYDINSGRRLQVFA--DMHKEHINVVKF  601 (721)
Q Consensus       529 ~~~~~~~---~~~~~~-~~~~~~~~~~~V~sv~~sp~~~~lls~g~-Dg~IrlWDl~s~~~v~~l~--~~h~~~V~sI~f  601 (721)
                      .......   ...... .+...-+....+....+.|+++++++..- --.|.+|++..|+....-.  -........|.|
T Consensus       119 ~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~F  198 (346)
T COG2706         119 QADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVF  198 (346)
T ss_pred             ccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEE
Confidence            7632211   111100 00111111122788889999999999873 3569999999776532211  114567789999


Q ss_pred             cCCCCcEEEEEECCCcEEEEECCC--CCceeEEE-------ecCCCCeEEEEEecCCCEEEEEeC-CCcEEEEEcC--CC
Q 004969          602 SNHSPSIFATSSFDQDVKLWDLRQ--KPIQPCYT-------ASSSKGNVMVCFSPDDHYLLGKGS-GTSMFVQSLR--GD  669 (721)
Q Consensus       602 sPdg~~lLaSgs~DgtIrIWDlrs--~~~~~~~~-------~~~~~~~vsl~fSpdg~~Lasgs~-Dg~I~VWDl~--g~  669 (721)
                      +|+++...+..--+++|-+|....  ++...+..       +.+..+.-.+..+|||++|+++.. ...|.+|.+.  +.
T Consensus       199 Hpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g  278 (346)
T COG2706         199 HPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGG  278 (346)
T ss_pred             cCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCC
Confidence            999954445566699999999887  33322222       123333337899999999998753 3367777776  22


Q ss_pred             cccc------cccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          670 PFRD------FNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       670 ~l~~------~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      .+.-      +........++|.+       .+|+.++..
T Consensus       279 ~L~~~~~~~teg~~PR~F~i~~~g-------~~Liaa~q~  311 (346)
T COG2706         279 KLELVGITPTEGQFPRDFNINPSG-------RFLIAANQK  311 (346)
T ss_pred             EEEEEEEeccCCcCCccceeCCCC-------CEEEEEccC
Confidence            2211      12234556777887       555555443

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.35  E-value=8.8e-07  Score=96.78  Aligned_cols=197  Identities=10%  Similarity=0.056  Sum_probs=126.0

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCC-----CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHEN-----ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH  530 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~t-----g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~  530 (721)
                      |++++--. +.+-+++++.|.+|++|.++.     |.....+....|+.+|.++.|. .+.++++  +.||.|.+||.-.
T Consensus       738 iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL-~~lr~i~--ScD~giHlWDPFi  813 (1034)
T KOG4190|consen  738 IRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFL-ADLRSIA--SCDGGIHLWDPFI  813 (1034)
T ss_pred             hHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeee-eccceee--eccCcceeecccc
Confidence            44444444 667799999999999999863     2222333344999999999997 5555654  5689999999877


Q ss_pred             CCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEE-eCCCcEEEEECCCCcEEEEEcc----ccCCCeEEEEEcCCC
Q 004969          531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLAS-GYSKNIALYDINSGRRLQVFAD----MHKEHINVVKFSNHS  605 (721)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~-g~Dg~IrlWDl~s~~~v~~l~~----~h~~~V~sI~fsPdg  605 (721)
                      +...-+.......    ...+.|.++.- -+...++++ +...+|+++|.+.++.+..++-    +....+.+++..|.|
T Consensus       814 gr~Laq~~dapk~----~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~G  888 (1034)
T KOG4190|consen  814 GRLLAQMEDAPKE----GAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKG  888 (1034)
T ss_pred             cchhHhhhcCccc----CCCceeEeccc-CcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCc
Confidence            6553221111100    00012333321 123344444 3578999999999887665541    244678899999999


Q ss_pred             CcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEE-EE
Q 004969          606 PSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFV-QS  665 (721)
Q Consensus       606 ~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~V-WD  665 (721)
                       ++++++-..|.|.+.|.|+++.  +..+..-.-.. .+ -.|..+.++....|.++.| |.
T Consensus       889 -N~lAa~LSnGci~~LDaR~G~v--INswrpmecdllql-aapsdq~L~~saldHslaVnWh  946 (1034)
T KOG4190|consen  889 -NKLAAALSNGCIAILDARNGKV--INSWRPMECDLLQL-AAPSDQALAQSALDHSLAVNWH  946 (1034)
T ss_pred             -chhhHHhcCCcEEEEecCCCce--eccCCcccchhhhh-cCchhHHHHhhcccceeEeeeh
Confidence             8999999999999999999854  22222111111 11 1355666776667777777 65

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.35  E-value=2.9e-07  Score=105.18  Aligned_cols=204  Identities=15%  Similarity=0.129  Sum_probs=139.2

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC-C-eEEEEEcCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN-G-SLKLYDIRHMP  532 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D-G-tVrIWDi~~~~  532 (721)
                      .-+|++|+. +.++|+.|+..|.|+++++.+|.....+.  +|..+|+.+.-+ .++..+++.+.- . -..+|++...-
T Consensus      1103 ~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~n--cH~SavT~vePs-~dgs~~Ltsss~S~PlsaLW~~~s~~ 1178 (1516)
T KOG1832|consen 1103 LFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVN--CHQSAVTLVEPS-VDGSTQLTSSSSSSPLSALWDASSTG 1178 (1516)
T ss_pred             ceeeEEeec-CCceEEeeeccceEEEEEccCcccccccc--cccccccccccc-CCcceeeeeccccCchHHHhcccccc
Confidence            368999999 88999999999999999999998887776  899999999976 566666555433 2 47789987621


Q ss_pred             CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcc---ccCCCeEEEEEcCCCCcEE
Q 004969          533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD---MHKEHINVVKFSNHSPSIF  609 (721)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~---~h~~~V~sI~fsPdg~~lL  609 (721)
                      .         ....|   ..-.++.|+.....-+.|.......+||+.++.++.++..   +....-++..|+|+. .++
T Consensus      1179 ~---------~~Hsf---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D-~LI 1245 (1516)
T KOG1832|consen 1179 G---------PRHSF---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCD-TLI 1245 (1516)
T ss_pred             C---------ccccc---cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCc-ceE
Confidence            1         12222   2235666755544555555556789999999988776331   122334778999998 565


Q ss_pred             EEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCccccc--ccCeEEEEECCCC
Q 004969          610 ATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDF--NMSILAAYTRPSS  687 (721)
Q Consensus       610 aSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~~~--~~~V~~v~fsP~~  687 (721)
                      +   .||  .+||+|...  .++.+..-.....-.|+|.|..++..+.     |||++.-.+..+  ...-..+.|+..|
T Consensus      1246 l---ndG--vLWDvR~~~--aIh~FD~ft~~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ldqc~VtFNstG 1313 (1516)
T KOG1832|consen 1246 L---NDG--VLWDVRIPE--AIHRFDQFTDYGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLDQCAVTFNSTG 1313 (1516)
T ss_pred             e---eCc--eeeeeccHH--HHhhhhhheecccccccCCCceEEeech-----hhhhHHHHHHhcCccccceEEEeccCc
Confidence            4   455  479999863  3444443333335689999999887663     899983211111  2234557777777

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.33  E-value=0.0001  Score=82.76  Aligned_cols=192  Identities=14%  Similarity=-0.008  Sum_probs=117.7

Q ss_pred             eEEEEEeCCCCCE-EEEEEC---CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEE-EEeCC--CeEEEEEc
Q 004969          456 PRQFEYHPSISCL-MVFGTL---DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLI-AGSDN--GSLKLYDI  528 (721)
Q Consensus       456 V~~lafsP~dg~~-LasGs~---DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~La-Sgs~D--GtVrIWDi  528 (721)
                      ...-.|+| +++. ++..+.   +..|.++|+.+|+......   ..+......|+ ++++.++ +.+.+  ..|.++|+
T Consensus       190 ~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~---~~g~~~~~~~S-PDG~~la~~~~~~g~~~Iy~~dl  264 (419)
T PRK04043        190 NIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS---SQGMLVVSDVS-KDGSKLLLTMAPKGQPDIYLYDT  264 (419)
T ss_pred             eEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEec---CCCcEEeeEEC-CCCCEEEEEEccCCCcEEEEEEC
Confidence            56789999 7774 554443   3579999998887655443   23456667898 5676554 44444  45777787


Q ss_pred             CCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-CC--cEEEEECCCCcEEEEEccccCCCeEEEEEcCCC
Q 004969          529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-SK--NIALYDINSGRRLQVFADMHKEHINVVKFSNHS  605 (721)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-Dg--~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg  605 (721)
                      .++..  ..+...        ........|+|+|..++..+. .+  .|.++|+.+++..+....  ...  ...|+|+|
T Consensus       265 ~~g~~--~~LT~~--------~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~--g~~--~~~~SPDG  330 (419)
T PRK04043        265 NTKTL--TQITNY--------PGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH--GKN--NSSVSTYK  330 (419)
T ss_pred             CCCcE--EEcccC--------CCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC--CCc--CceECCCC
Confidence            66542  111111        111234579999998887774 23  688889988776443331  111  24899999


Q ss_pred             CcEEEEEECC--------CcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCC---cEEEEEcCCC
Q 004969          606 PSIFATSSFD--------QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGT---SMFVQSLRGD  669 (721)
Q Consensus       606 ~~lLaSgs~D--------gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg---~I~VWDl~g~  669 (721)
                      ..++++....        ..|.+.|+.++....+..   ........|+|||+.++..+.++   .+.+.++.|.
T Consensus       331 ~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~---~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        331 NYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTA---NGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             CEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCC---CCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence            5444444432        368888988875433322   22222579999999887665433   3566777764

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.33  E-value=0.00023  Score=80.10  Aligned_cols=192  Identities=14%  Similarity=0.093  Sum_probs=115.3

Q ss_pred             CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCE-EEEEeC---CCeEEEEEcCCCCCcccccccCcceeEeccCC
Q 004969          476 GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSK-LIAGSD---NGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFD  551 (721)
Q Consensus       476 G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~-LaSgs~---DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~  551 (721)
                      ..|.+-|.. |...+.+.. +  +.+..-.|+ ++++. ++..+.   +..|.++|+.+++..         .+ ....+
T Consensus       169 ~~l~~~d~d-g~~~~~~~~-~--~~~~~p~wS-pDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~---------~l-t~~~g  233 (419)
T PRK04043        169 SNIVLADYT-LTYQKVIVK-G--GLNIFPKWA-NKEQTAFYYTSYGERKPTLYKYNLYTGKKE---------KI-ASSQG  233 (419)
T ss_pred             ceEEEECCC-CCceeEEcc-C--CCeEeEEEC-CCCCcEEEEEEccCCCCEEEEEECCCCcEE---------EE-ecCCC
Confidence            355555554 333333331 2  367789998 56663 554433   356888898876541         11 11223


Q ss_pred             CeEEEEEecCCCEEEEEeC---CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCC--cEEEEECCCC
Q 004969          552 QLTSVHVNSMDELFLASGY---SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQ--DVKLWDLRQK  626 (721)
Q Consensus       552 ~V~sv~~sp~~~~lls~g~---Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~Dg--tIrIWDlrs~  626 (721)
                      ......|+|++..++....   +..|.++|+.+++..+ +.. +........|+|||..++++....+  .|.++|+.++
T Consensus       234 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~-LT~-~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g  311 (419)
T PRK04043        234 MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQ-ITN-YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG  311 (419)
T ss_pred             cEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEE-ccc-CCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            3456789999988776543   4568888998776443 332 3333345689999955555554444  5777888877


Q ss_pred             CceeEEEecCCCCeEEEEEecCCCEEEEEeCC---------CcEEEEEcCCCccccc--ccCeEEEEECCCCC
Q 004969          627 PIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG---------TSMFVQSLRGDPFRDF--NMSILAAYTRPSSK  688 (721)
Q Consensus       627 ~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D---------g~I~VWDl~g~~l~~~--~~~V~~v~fsP~~~  688 (721)
                      ....+. ..+..   ...|||||++|+..+..         ..|++.|+.+...+..  ........|+|+++
T Consensus       312 ~~~rlt-~~g~~---~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~  380 (419)
T PRK04043        312 SVEQVV-FHGKN---NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSSDGG  380 (419)
T ss_pred             CeEeCc-cCCCc---CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECCCCC
Confidence            543332 12221   24899999999876543         3678888875543322  12233478999993

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.31  E-value=0.00023  Score=75.55  Aligned_cols=210  Identities=16%  Similarity=0.243  Sum_probs=137.9

Q ss_pred             CCeEEEEECCCCe-EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeC---CCeEEEEEcCCCCCcccccccCcceeEeccC
Q 004969          475 DGEIVVVNHENEN-IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD---NGSLKLYDIRHMPPSIRGMHYGAGTVTFDEF  550 (721)
Q Consensus       475 DG~I~IWdl~tg~-~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~---DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~  550 (721)
                      +.-|++|++.+.. .+...+...+.+.++=|+|+ ++.+.|.++..   +|.|.-|.++...-.+..+..    ... ..
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~-~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~----~~~-~g   88 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVN-PDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNR----QTL-PG   88 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEEC-CCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeec----ccc-CC
Confidence            4569999987322 22222223566788889998 67778888754   478888888753211111110    001 11


Q ss_pred             CCeEEEEEecCCCEEEEEeC-CCcEEEEECCC-CcE---EEEEccccCCC----------eEEEEEcCCCCcEEEEEEC-
Q 004969          551 DQLTSVHVNSMDELFLASGY-SKNIALYDINS-GRR---LQVFADMHKEH----------INVVKFSNHSPSIFATSSF-  614 (721)
Q Consensus       551 ~~V~sv~~sp~~~~lls~g~-Dg~IrlWDl~s-~~~---v~~l~~~h~~~----------V~sI~fsPdg~~lLaSgs~-  614 (721)
                      .+-+.++++++++.++++.. .|.|.++-++. |..   +..+.  |.+.          +....+.|++ +++++..- 
T Consensus        89 ~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~--h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~DLG  165 (346)
T COG2706          89 SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVK--HTGSGPHERQESPHVHSANFTPDG-RYLVVPDLG  165 (346)
T ss_pred             CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeee--cCCCCCCccccCCccceeeeCCCC-CEEEEeecC
Confidence            22378899999999999885 68999999975 432   33333  5544          8889999999 56666543 


Q ss_pred             CCcEEEEECCCCCceeEE--EecCCCCeEEEEEecCCCEEEEEe-CCCcEEEEEcCC--Cccc----------ccc--cC
Q 004969          615 DQDVKLWDLRQKPIQPCY--TASSSKGNVMVCFSPDDHYLLGKG-SGTSMFVQSLRG--DPFR----------DFN--MS  677 (721)
Q Consensus       615 DgtIrIWDlrs~~~~~~~--~~~~~~~~vsl~fSpdg~~Lasgs-~Dg~I~VWDl~g--~~l~----------~~~--~~  677 (721)
                      --.|.+|++..++..+..  .+....++--+.|+|++++....+ -+++|-+|....  ..+.          .|.  ..
T Consensus       166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~  245 (346)
T COG2706         166 TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNW  245 (346)
T ss_pred             CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCc
Confidence            346999999987655432  334555666799999999987765 488999999874  2222          122  35


Q ss_pred             eEEEEECCCCCccccc
Q 004969          678 ILAAYTRPSSKSEIVK  693 (721)
Q Consensus       678 V~~v~fsP~~~~~~v~  693 (721)
                      ...++.+|+|+..++.
T Consensus       246 ~aaIhis~dGrFLYas  261 (346)
T COG2706         246 AAAIHISPDGRFLYAS  261 (346)
T ss_pred             eeEEEECCCCCEEEEe
Confidence            6678889999655443

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.28  E-value=4.1e-06  Score=102.28  Aligned_cols=190  Identities=14%  Similarity=0.233  Sum_probs=134.2

Q ss_pred             CEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeE
Q 004969          467 CLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVT  546 (721)
Q Consensus       467 ~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~  546 (721)
                      +.+.....++...-|..+.+.....    .+-..|.++.=+ +...+.+||+.||.|++|.-..++..+..        +
T Consensus      2181 ~~~~~~n~~~~~~tq~~~~~~~~~k----~~v~~v~r~~sH-p~~~~Yltgs~dgsv~~~~w~~~~~v~~~--------r 2247 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGASVMIK----HPVENVRRMTSH-PSDPYYLTGSQDGSVRMFEWGHGQQVVCF--------R 2247 (2439)
T ss_pred             ccCCcccCCccccceecccceeEee----cccCceeeecCC-CCCceEEecCCCceEEEEeccCCCeEEEe--------e
Confidence            3344444555555565543332221    334567777766 45567889999999999999886653211        1


Q ss_pred             eccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE---CCCcEEEEEC
Q 004969          547 FDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS---FDQDVKLWDL  623 (721)
Q Consensus       547 ~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs---~DgtIrIWDl  623 (721)
                      -.....|+.+.|+.+|+.+.++..||.+.+|.+. .++....+. |....+...|-.   ..+++++   .++.+.+||.
T Consensus      2248 t~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qc-hnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDt 2322 (2439)
T KOG1064|consen 2248 TAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQC-HNKALSDFRFIG---SLLATAGRSSDNRNVCLWDT 2322 (2439)
T ss_pred             ccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccceecccc-CCccccceeeee---hhhhccccCCCCCcccchhc
Confidence            1223568889999999999999999999999987 666666665 888888888865   3566654   4678999998


Q ss_pred             CCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCccccc
Q 004969          624 RQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDF  674 (721)
Q Consensus       624 rs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~~~  674 (721)
                      --..........+..+.+++++-|..+.|++||.+|.|++||++.+.++.+
T Consensus      2323 l~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~ 2373 (2439)
T KOG1064|consen 2323 LLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHT 2373 (2439)
T ss_pred             ccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHH
Confidence            654333333323334555899999999999999999999999996655443

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.28  E-value=2.7e-06  Score=86.09  Aligned_cols=149  Identities=17%  Similarity=0.221  Sum_probs=96.3

Q ss_pred             CCCEEEEEECCCeEEEEECCCCeE-EEEeecCCCCCCeEEEEEeeCCCCEEEEEeC-----CCeEEEEEcCCCCCccccc
Q 004969          465 ISCLMVFGTLDGEIVVVNHENENI-VSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD-----NGSLKLYDIRHMPPSIRGM  538 (721)
Q Consensus       465 dg~~LasGs~DG~I~IWdl~tg~~-i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~-----DGtVrIWDi~~~~~~~~~~  538 (721)
                      .++.+++|..||.+.+.+.+.... ...++. .|.+ -.+.++. ..++.+.+++.     -+..+.|+++..+..    
T Consensus       100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~-~~~~-~as~~~~-~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~----  172 (319)
T KOG4714|consen  100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPS-IHSG-SASRKIC-RHGNSILSGGCGNWNAQDNFYANTLDPIKTL----  172 (319)
T ss_pred             cCCceEecCCCceEEEEechHHHhhhhhccc-cccc-cccccee-ecccEEecCCcceEeeccceeeecccccccc----
Confidence            457799999999999999765211 111111 1111 1122222 23344443321     123445555442211    


Q ss_pred             ccCcceeEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCc
Q 004969          539 HYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQD  617 (721)
Q Consensus       539 ~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~Dgt  617 (721)
                           .......+.|.+++-||..+.++.+| .||.+-+||.+.......+..+|+.+++.+.|+|..|..|++++.||.
T Consensus       173 -----~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGs  247 (319)
T KOG4714|consen  173 -----IPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGS  247 (319)
T ss_pred             -----cccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCc
Confidence                 11111223488999999887777665 689999999998866555555699999999999999999999999999


Q ss_pred             EEEEECCC
Q 004969          618 VKLWDLRQ  625 (721)
Q Consensus       618 IrIWDlrs  625 (721)
                      +-.||..+
T Consensus       248 lw~wdas~  255 (319)
T KOG4714|consen  248 LWHWDAST  255 (319)
T ss_pred             EEEEcCCC
Confidence            99999875

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.27  E-value=3.4e-05  Score=85.20  Aligned_cols=224  Identities=11%  Similarity=0.165  Sum_probs=144.8

Q ss_pred             eEEEEEeCCCCCEEEEEEC-----------CCeEEEEECCCCeEEEEeecCCCCCCeE-EEEEeeCCCCEEEEEeCCCeE
Q 004969          456 PRQFEYHPSISCLMVFGTL-----------DGEIVVVNHENENIVSYIPSFGAMNSVL-GLCWLKKYPSKLIAGSDNGSL  523 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~-----------DG~I~IWdl~tg~~i~~l~~~~H~~~V~-sl~fsp~d~~~LaSgs~DGtV  523 (721)
                      |.-+.||| +.++|++-+.           ...+.|||+.+|...+.+........++ -+.|+ .++.++|--..+ +|
T Consensus       252 Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS-~DdKy~Arm~~~-si  328 (698)
T KOG2314|consen  252 VQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWS-HDDKYFARMTGN-SI  328 (698)
T ss_pred             ceeeecCC-ccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEec-cCCceeEEeccc-eE
Confidence            77899999 9999998763           2578999999999888876532223333 35787 788888776664 77


Q ss_pred             EEEEcCCCCC------cc-------------------------------ccc----------------------------
Q 004969          524 KLYDIRHMPP------SI-------------------------------RGM----------------------------  538 (721)
Q Consensus       524 rIWDi~~~~~------~~-------------------------------~~~----------------------------  538 (721)
                      .||+......      .+                               ..+                            
T Consensus       329 sIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyL  408 (698)
T KOG2314|consen  329 SIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYL  408 (698)
T ss_pred             EEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEE
Confidence            7877653100      00                               000                            


Q ss_pred             -------c-cC-cc------ee----------EeccCCCeEEEEEecCCCEEEEEeC---CCcEEEEECCC-C---cEEE
Q 004969          539 -------H-YG-AG------TV----------TFDEFDQLTSVHVNSMDELFLASGY---SKNIALYDINS-G---RRLQ  586 (721)
Q Consensus       539 -------~-~~-~~------~~----------~~~~~~~V~sv~~sp~~~~lls~g~---Dg~IrlWDl~s-~---~~v~  586 (721)
                             . .. .+      +.          ...-...|...+|.|.|+.+++-+.   ..++.+|-+.+ .   +.+.
T Consensus       409 cvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk  488 (698)
T KOG2314|consen  409 CVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVK  488 (698)
T ss_pred             EEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhh
Confidence                   0 00 00      00          0012345778889999999887664   46799998874 2   2333


Q ss_pred             EEccccCCCeEEEEEcCCCCcEEEEE---ECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeC------
Q 004969          587 VFADMHKEHINVVKFSNHSPSIFATS---SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGS------  657 (721)
Q Consensus       587 ~l~~~h~~~V~sI~fsPdg~~lLaSg---s~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~------  657 (721)
                      .+.   ....+.+.|+|.| .+++.+   |..|.+.++|+....+. ......|.....+.|.|.|+|+++++.      
T Consensus       489 ~~d---k~~~N~vfwsPkG-~fvvva~l~s~~g~l~F~D~~~a~~k-~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~  563 (698)
T KOG2314|consen  489 ELD---KKFANTVFWSPKG-RFVVVAALVSRRGDLEFYDTDYADLK-DTASPEHFAATEVEWDPTGRYVVTSSSSWRHKV  563 (698)
T ss_pred             hhc---ccccceEEEcCCC-cEEEEEEecccccceEEEecchhhhh-hccCccccccccceECCCCCEEEEeeehhhhcc
Confidence            333   3567889999999 666654   45788999999853222 222344556667999999999999876      


Q ss_pred             CCcEEEEEcCCCccccc-ccCeEEEEECCCC
Q 004969          658 GTSMFVQSLRGDPFRDF-NMSILAAYTRPSS  687 (721)
Q Consensus       658 Dg~I~VWDl~g~~l~~~-~~~V~~v~fsP~~  687 (721)
                      |..-++|+++|+.++.- -.......|.|.-
T Consensus       564 d~GYri~tfqGrll~~~~i~~f~qF~WRPRP  594 (698)
T KOG2314|consen  564 DNGYRIFTFQGRLLKEDIIDRFKQFLWRPRP  594 (698)
T ss_pred             ccceEEEEeecHHHHHHHHHHHHhhccCCCC
Confidence            44567899998765432 1233345677765

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.27  E-value=4e-06  Score=84.86  Aligned_cols=203  Identities=13%  Similarity=0.156  Sum_probs=122.5

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEe---------eCCCCEEEEEeCCCeEEEE
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWL---------KKYPSKLIAGSDNGSLKLY  526 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fs---------p~d~~~LaSgs~DGtVrIW  526 (721)
                      ++.+.+..  ...|+++..++.+......++.+....+.....++-.+++.+         ...++.+++++.||.+.+.
T Consensus        39 ~~~~~~v~--~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~  116 (319)
T KOG4714|consen   39 LSKVSLSA--EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVF  116 (319)
T ss_pred             EEEeechh--hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEE
Confidence            56666655  355677777777766665544443322211111222222221         1345679999999999999


Q ss_pred             EcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-----CCcEEEEECCCCcEEEEEccccCCCeEEEEE
Q 004969          527 DIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-----SKNIALYDINSGRRLQVFADMHKEHINVVKF  601 (721)
Q Consensus       527 Di~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-----Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~f  601 (721)
                      +.+.-..    +.........    .-.+.+....+..+.+++.     -+..+.|+++..+....-.. ....|.+++-
T Consensus       117 s~~~~~~----~~~~i~~~~~----~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~-~~~~v~~l~~  187 (319)
T KOG4714|consen  117 STDKDLA----LMSRIPSIHS----GSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK-ALDAVTALCS  187 (319)
T ss_pred             echHHHh----hhhhcccccc----cccccceeecccEEecCCcceEeeccceeeeccccccccccccc-ccccchhhhC
Confidence            9876211    1001111111    0112222233444444432     24456666664332221111 2345999999


Q ss_pred             cCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEec-CCCEEEEEeCCCcEEEEEcCCCc
Q 004969          602 SNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSP-DDHYLLGKGSGTSMFVQSLRGDP  670 (721)
Q Consensus       602 sPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSp-dg~~Lasgs~Dg~I~VWDl~g~~  670 (721)
                      +|...+++++|+.||.+-+||.|+.. .++..+..|...+ -+-|+| ++..|++++.||.+.-||-.+.+
T Consensus       188 hp~qq~~v~cgt~dg~~~l~d~rn~~-~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~  257 (319)
T KOG4714|consen  188 HPAQQHLVCCGTDDGIVGLWDARNVA-MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTF  257 (319)
T ss_pred             CcccccEEEEecCCCeEEEEEccccc-chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCce
Confidence            99887899999999999999999873 4455566777777 799999 77899999999999999987543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.23  E-value=4.1e-06  Score=87.73  Aligned_cols=146  Identities=13%  Similarity=0.167  Sum_probs=112.4

Q ss_pred             EEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC-----cEEEEEc
Q 004969          515 IAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSG-----RRLQVFA  589 (721)
Q Consensus       515 aSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~-----~~v~~l~  589 (721)
                      ++.|.+-.|-+-|++++-.           ..|...+.|.++.|+..++.++.|...|.|..+|++.+     .+.+.+.
T Consensus       228 fs~G~sqqv~L~nvetg~~-----------qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly  296 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ-----------QSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY  296 (425)
T ss_pred             ecccccceeEEEEeecccc-----------cccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE
Confidence            5667777888889988532           24455667888999888999999999999999999964     5666776


Q ss_pred             cccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCc-eeEEEecCCCCeE---EEEEecCCCEEEEEeCCCcEEEEE
Q 004969          590 DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPI-QPCYTASSSKGNV---MVCFSPDDHYLLGKGSGTSMFVQS  665 (721)
Q Consensus       590 ~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~-~~~~~~~~~~~~v---sl~fSpdg~~Lasgs~Dg~I~VWD  665 (721)
                        |.+.|+++.........+++.+.+|+|++||+|.-++ ..+.+..+|....   -+-..+....+++++.|...+||.
T Consensus       297 --h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWs  374 (425)
T KOG2695|consen  297 --HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWS  374 (425)
T ss_pred             --cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEe
Confidence              9999999988773336888889999999999997654 2244555665433   355677788899999999999999


Q ss_pred             cC-CCcccc
Q 004969          666 LR-GDPFRD  673 (721)
Q Consensus       666 l~-g~~l~~  673 (721)
                      ++ |+.+..
T Consensus       375 l~~ghLl~t  383 (425)
T KOG2695|consen  375 LDSGHLLCT  383 (425)
T ss_pred             cccCceeec
Confidence            98 555443

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.22  E-value=0.00018  Score=79.88  Aligned_cols=223  Identities=12%  Similarity=0.151  Sum_probs=136.3

Q ss_pred             EEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeC-CCCEEEE-----EeCCCeEEEEEcCC
Q 004969          457 RQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKK-YPSKLIA-----GSDNGSLKLYDIRH  530 (721)
Q Consensus       457 ~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~-d~~~LaS-----gs~DGtVrIWDi~~  530 (721)
                      ++..|++ |.. +++--..+.+++|+..+-+.+.   ..-|...|+.+.++|. ....+++     .|.-+.|+||....
T Consensus       129 W~~qfs~-dEs-l~arlv~nev~f~~~~~f~~~~---~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~  203 (566)
T KOG2315|consen  129 WVPQFSI-DES-LAARLVSNEVQFYDLGSFKTIQ---HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPE  203 (566)
T ss_pred             ccccccc-chh-hhhhhhcceEEEEecCCcccee---eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccc
Confidence            4567777 544 3333446789999987633221   1234677999999864 3445544     45667899999873


Q ss_pred             CCCcccccccCcceeEeccCCCeEEEEEecCCCEEEE-Ee-C-C---------CcEEEEECCCCcEEEEEccccCCCeEE
Q 004969          531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLA-SG-Y-S---------KNIALYDINSGRRLQVFADMHKEHINV  598 (721)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls-~g-~-D---------g~IrlWDl~s~~~v~~l~~~h~~~V~s  598 (721)
                      ...  ..   ......|-..+. ..+.|++.+.-+++ ++ + |         .++++.++........+.  ..++|.+
T Consensus       204 ~~~--~~---~~a~ksFFkadk-vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~--k~GPVhd  275 (566)
T KOG2315|consen  204 EGQ--HQ---PVANKSFFKADK-VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL--KEGPVHD  275 (566)
T ss_pred             ccc--cc---hhhhccccccce-eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC--CCCCceE
Confidence            222  00   001111211122 34567766654332 22 1 3         368888888445555554  6889999


Q ss_pred             EEEcCCCCcEEEE-EECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCC---CcEEEEEcCCCc-ccc
Q 004969          599 VKFSNHSPSIFAT-SSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG---TSMFVQSLRGDP-FRD  673 (721)
Q Consensus       599 I~fsPdg~~lLaS-gs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D---g~I~VWDl~g~~-l~~  673 (721)
                      +.|+|.+..+.++ |-.-..+-|||++..   +++.+. ......+-|+|.|++++.+|-+   |.+-|||+.... +..
T Consensus       276 v~W~~s~~EF~VvyGfMPAkvtifnlr~~---~v~df~-egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~  351 (566)
T KOG2315|consen  276 VTWSPSGREFAVVYGFMPAKVTIFNLRGK---PVFDFP-EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAK  351 (566)
T ss_pred             EEECCCCCEEEEEEecccceEEEEcCCCC---EeEeCC-CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccc
Confidence            9999999433333 344677999999863   455543 2333479999999999987764   689999998432 322


Q ss_pred             cc-cCeEEEEECCCCCcccccccEEEEecCC
Q 004969          674 FN-MSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       674 ~~-~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      +. ....-..|+|+|       ..+.|+...
T Consensus       352 ~~a~~tt~~eW~PdG-------e~flTATTa  375 (566)
T KOG2315|consen  352 FKAANTTVFEWSPDG-------EYFLTATTA  375 (566)
T ss_pred             cccCCceEEEEcCCC-------cEEEEEecc
Confidence            32 234557999999       555555443

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.20  E-value=0.0002  Score=87.71  Aligned_cols=221  Identities=16%  Similarity=0.162  Sum_probs=141.8

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEE----ECCCCe--EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVV----NHENEN--IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDI  528 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IW----dl~tg~--~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi  528 (721)
                      .|.++.|-+ +..-++.+..+|.|.+.    +..+..  ++..+     ...|.+++|+ ||...|+.++.+|++.+.+-
T Consensus        77 ~ivs~~yl~-d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v-----d~GI~a~~WS-PD~Ella~vT~~~~l~~mt~  149 (928)
T PF04762_consen   77 KIVSFQYLA-DSESLCIALASGDIILVREDPDPDEDEIEIVGSV-----DSGILAASWS-PDEELLALVTGEGNLLLMTR  149 (928)
T ss_pred             cEEEEEecc-CCCcEEEEECCceEEEEEccCCCCCceeEEEEEE-----cCcEEEEEEC-CCcCEEEEEeCCCEEEEEec
Confidence            589999999 88889999999999999    554433  33333     3689999999 78899999998999888653


Q ss_pred             CC-------------C----------CC--cccccccCc-------ce------eEeccCCCeEEEEEecCCCEEEEEeC
Q 004969          529 RH-------------M----------PP--SIRGMHYGA-------GT------VTFDEFDQLTSVHVNSMDELFLASGY  570 (721)
Q Consensus       529 ~~-------------~----------~~--~~~~~~~~~-------~~------~~~~~~~~V~sv~~sp~~~~lls~g~  570 (721)
                      .-             +          +.  ..++..+..       ..      ......+.-..++|-.+|.+|++.+-
T Consensus       150 ~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~  229 (928)
T PF04762_consen  150 DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSV  229 (928)
T ss_pred             cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEE
Confidence            31             0          00  000000110       00      00112234578899888999988873


Q ss_pred             ---C---CcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC---CCcEEEEECCCCCceeEEEec--CCCC
Q 004969          571 ---S---KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF---DQDVKLWDLRQKPIQPCYTAS--SSKG  639 (721)
Q Consensus       571 ---D---g~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~---DgtIrIWDlrs~~~~~~~~~~--~~~~  639 (721)
                         .   ..+|+|+-. |....+-.. -.+--.+++|.|.| +++|+.-.   ...|.+|.- +|.....+.++  ....
T Consensus       230 ~~~~~~~R~iRVy~Re-G~L~stSE~-v~gLe~~l~WrPsG-~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~  305 (928)
T PF04762_consen  230 EPETGSRRVIRVYSRE-GELQSTSEP-VDGLEGALSWRPSG-NLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEE  305 (928)
T ss_pred             EcCCCceeEEEEECCC-ceEEecccc-CCCccCCccCCCCC-CEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCc
Confidence               2   469999966 665444432 34444578999999 78887754   345666664 34333344444  2333


Q ss_pred             eE-EEEEecCCCEEEEEeCCCcEEEEEcCC------Ccccc-cccCeEEEEECCCC
Q 004969          640 NV-MVCFSPDDHYLLGKGSGTSMFVQSLRG------DPFRD-FNMSILAAYTRPSS  687 (721)
Q Consensus       640 ~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g------~~l~~-~~~~V~~v~fsP~~  687 (721)
                      .+ .+.|++|+..|+..-.|. |.+|-...      +.+.- -...+..+.|||..
T Consensus       306 ~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~  360 (928)
T PF04762_consen  306 KVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEK  360 (928)
T ss_pred             eeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCC
Confidence            34 899999999999977544 99998651      11111 02234558999975

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.19  E-value=0.00027  Score=76.97  Aligned_cols=206  Identities=13%  Similarity=0.101  Sum_probs=137.0

Q ss_pred             CCCEEEEEECCCeEEEEECCCCeEEEEe---ecC-CCC-----CCeEEEE-EeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          465 ISCLMVFGTLDGEIVVVNHENENIVSYI---PSF-GAM-----NSVLGLC-WLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       465 dg~~LasGs~DG~I~IWdl~tg~~i~~l---~~~-~H~-----~~V~sl~-fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      ||+.++. +..|.|.+||.++....+.-   +.. ...     .+..-+. |++.++++++..|. |...|.+...+.  
T Consensus       277 DGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~--  352 (668)
T COG4946         277 DGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGY--  352 (668)
T ss_pred             CCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCe--
Confidence            7777766 45788999999876543211   110 000     1111112 44567888888876 466666665532  


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCC-cEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSK-NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS  613 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg-~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs  613 (721)
                               .+...+...|.-..+..+...++.|..|| .+-++|.++++..+...  .-+.|.++..+|+| ..++++.
T Consensus       353 ---------~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~--~lg~I~av~vs~dG-K~~vvaN  420 (668)
T COG4946         353 ---------SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK--DLGNIEAVKVSPDG-KKVVVAN  420 (668)
T ss_pred             ---------eEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC--CccceEEEEEcCCC-cEEEEEc
Confidence                     33444555566677767777888888888 89999999887554443  66789999999999 7888888


Q ss_pred             CCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCC----cEEEEEcCCCccccc---ccCeEEEEECC
Q 004969          614 FDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGT----SMFVQSLRGDPFRDF---NMSILAAYTRP  685 (721)
Q Consensus       614 ~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg----~I~VWDl~g~~l~~~---~~~V~~v~fsP  685 (721)
                      ....+-+.|+.++..+.+  -....+.+ .+.|||+++++|-+-.+|    .|+++|+.+..+-..   ...-.+=+|.|
T Consensus       421 dr~el~vididngnv~~i--dkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~  498 (668)
T COG4946         421 DRFELWVIDIDNGNVRLI--DKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDP  498 (668)
T ss_pred             CceEEEEEEecCCCeeEe--cccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCC
Confidence            888999999999864322  22333444 899999999999776655    789999987543221   11222335666


Q ss_pred             CCC
Q 004969          686 SSK  688 (721)
Q Consensus       686 ~~~  688 (721)
                      +++
T Consensus       499 d~r  501 (668)
T COG4946         499 DGR  501 (668)
T ss_pred             CCc
Confidence            664

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.18  E-value=5.5e-06  Score=90.73  Aligned_cols=167  Identities=16%  Similarity=0.168  Sum_probs=115.7

Q ss_pred             CCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEe-ccCCCeEEEEEecCCCEEEEEeCCCc
Q 004969          495 FGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKN  573 (721)
Q Consensus       495 ~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~Dg~  573 (721)
                      .||+..|..++-. .+.+.+++++.|++|++|.++...-.   ........++ .|+.+|.++.|-.+...++  +.||.
T Consensus       732 ~GH~~~iRai~Ai-dNENSFiSASkDKTVKLWSik~EgD~---~~tsaCQfTY~aHkk~i~~igfL~~lr~i~--ScD~g  805 (1034)
T KOG4190|consen  732 TGHQEKIRAIAAI-DNENSFISASKDKTVKLWSIKPEGDE---IGTSACQFTYQAHKKPIHDIGFLADLRSIA--SCDGG  805 (1034)
T ss_pred             cCcHHHhHHHHhc-ccccceeeccCCceEEEEEeccccCc---cccceeeeEhhhccCcccceeeeeccceee--eccCc
Confidence            4899888888765 56788999999999999999763221   1111122233 3667899998866555554  45789


Q ss_pred             EEEEECCCCcEEEEEccc-cCCCeEEEEEcCC--CCcEEEEEECCCcEEEEECCCCCceeEEEec---CCCCeE-EEEEe
Q 004969          574 IALYDINSGRRLQVFADM-HKEHINVVKFSNH--SPSIFATSSFDQDVKLWDLRQKPIQPCYTAS---SSKGNV-MVCFS  646 (721)
Q Consensus       574 IrlWDl~s~~~v~~l~~~-h~~~V~sI~fsPd--g~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~---~~~~~v-sl~fS  646 (721)
                      |++||.--|+++..+... ..+.+..+..-|.  .+-+++.++...+|+++|.|...........   +..+.+ +++..
T Consensus       806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa  885 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA  885 (1034)
T ss_pred             ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence            999999888877644421 2233333443333  3234444578999999999998765554443   233334 79999


Q ss_pred             cCCCEEEEEeCCCcEEEEEcC
Q 004969          647 PDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       647 pdg~~Lasgs~Dg~I~VWDl~  667 (721)
                      +.|++++++-.+|.|.+.|.+
T Consensus       886 ~~GN~lAa~LSnGci~~LDaR  906 (1034)
T KOG4190|consen  886 DKGNKLAAALSNGCIAILDAR  906 (1034)
T ss_pred             cCcchhhHHhcCCcEEEEecC
Confidence            999999999999999999988

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.13  E-value=5e-05  Score=88.11  Aligned_cols=184  Identities=16%  Similarity=0.185  Sum_probs=133.9

Q ss_pred             CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcce
Q 004969          465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGT  544 (721)
Q Consensus       465 dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~  544 (721)
                      ++..++.|+....+..+|+.+++..+.....  .+.|+-+.   .+++.+.+|...|+|.+-|.++.+.          .
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~--a~~v~imR---~Nnr~lf~G~t~G~V~LrD~~s~~~----------i  210 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVS--ASGVTIMR---YNNRNLFCGDTRGTVFLRDPNSFET----------I  210 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeecc--CCceEEEE---ecCcEEEeecccceEEeecCCcCce----------e
Confidence            4466788888888999999988877666532  23366666   4578999999999999999988543          2


Q ss_pred             eEec-cCCCeEEEEEecCCCEEEEEeC---------CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969          545 VTFD-EFDQLTSVHVNSMDELFLASGY---------SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF  614 (721)
Q Consensus       545 ~~~~-~~~~V~sv~~sp~~~~lls~g~---------Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~  614 (721)
                      ..+. |.+.|.+++.  .|+.++++|.         |.-|++||+|+.+.+.-+.- +.+ ..-+.|+|.-...+++++.
T Consensus       211 ht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~-~~~-P~flrf~Psl~t~~~V~S~  286 (1118)
T KOG1275|consen  211 HTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF-PYG-PQFLRFHPSLTTRLAVTSQ  286 (1118)
T ss_pred             eeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCccc-ccC-chhhhhcccccceEEEEec
Confidence            2332 4455676666  8999999984         56789999998776655542 333 3557899987788999999


Q ss_pred             CCcEEEEECCCC--CceeEEEecC-CCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          615 DQDVKLWDLRQK--PIQPCYTASS-SKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       615 DgtIrIWDlrs~--~~~~~~~~~~-~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                      .|...+-|..+-  ....++.+.. ..+...+.+|++|+.++.|..+|.|.+|.-+
T Consensus       287 sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~  342 (1118)
T KOG1275|consen  287 SGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR  342 (1118)
T ss_pred             ccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence            999999994331  1122333333 3334489999999999999999999999843

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.11  E-value=8.1e-06  Score=59.22  Aligned_cols=39  Identities=28%  Similarity=0.650  Sum_probs=36.0

Q ss_pred             CcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 004969          582 GRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWD  622 (721)
Q Consensus       582 ~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWD  622 (721)
                      ++++.++.+ |.+.|++++|+|++ ..+++|+.|++|++||
T Consensus         1 g~~~~~~~~-h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRG-HSSSINSIAWSPDG-NFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEES-SSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcC-CCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence            467888987 99999999999998 8999999999999998

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.10  E-value=4.4e-05  Score=81.70  Aligned_cols=155  Identities=13%  Similarity=0.154  Sum_probs=98.7

Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe---CCCcEEEEECCCCcEE
Q 004969          509 KYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG---YSKNIALYDINSGRRL  585 (721)
Q Consensus       509 ~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g---~Dg~IrlWDl~s~~~v  585 (721)
                      +.+.+++.+..+....++++.........      ...+.....-+++.+........++.   +...+.+|....+...
T Consensus        72 ~~~~llAv~~~~K~~~~f~~~~~~~~~kl------~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~  145 (390)
T KOG3914|consen   72 DSGRLVAVATSSKQRAVFDYRENPKGAKL------LDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCE  145 (390)
T ss_pred             CCceEEEEEeCCCceEEEEEecCCCccee------eeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcc
Confidence            66777777777777777777664431110      11111112223444444455555444   3455666665555544


Q ss_pred             EEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEE
Q 004969          586 QVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQ  664 (721)
Q Consensus       586 ~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VW  664 (721)
                      ..+ | |-+-++.|+|+||+ .+++++..|..||+=....--....+ .-||...| .++.- +++.|++||.|+++++|
T Consensus       146 ~~l-G-hvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa~f~Iesf-clGH~eFVS~isl~-~~~~LlS~sGD~tlr~W  220 (390)
T KOG3914|consen  146 PIL-G-HVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPATFVIESF-CLGHKEFVSTISLT-DNYLLLSGSGDKTLRLW  220 (390)
T ss_pred             hhh-h-hhhhhheeeecCCC-CEEEEecCCceEEEEecCcccchhhh-ccccHhheeeeeec-cCceeeecCCCCcEEEE
Confidence            444 3 99999999999999 89999999999999766543221112 23677777 56665 45668999999999999


Q ss_pred             EcC-CCccccc
Q 004969          665 SLR-GDPFRDF  674 (721)
Q Consensus       665 Dl~-g~~l~~~  674 (721)
                      |++ |+.+..+
T Consensus       221 d~~sgk~L~t~  231 (390)
T KOG3914|consen  221 DITSGKLLDTC  231 (390)
T ss_pred             ecccCCccccc
Confidence            998 5554433

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.09  E-value=9.1e-05  Score=77.86  Aligned_cols=203  Identities=15%  Similarity=0.165  Sum_probs=134.6

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEE-CCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVN-HENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWd-l~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      |+....-| ...-+++.+.|.+++||- .+.|+.-..+.. ....+++++.+. .+...|+.|-..|++.-+.+...-..
T Consensus        27 vn~~~l~~-~e~gv~~~s~drtvrv~lkrds~q~wpsI~~-~mP~~~~~~~y~-~e~~~L~vg~~ngtvtefs~sedfnk  103 (404)
T KOG1409|consen   27 VNAAILIP-KEEGVISVSEDRTVRVWLKRDSGQYWPSIYH-YMPSPCSAMEYV-SESRRLYVGQDNGTVTEFALSEDFNK  103 (404)
T ss_pred             hhhheecc-CCCCeEEccccceeeeEEeccccccCchhhh-hCCCCceEeeee-ccceEEEEEEecceEEEEEhhhhhhh
Confidence            33333445 445588999999999995 334443333321 235788999987 67788999999999999877653221


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF  614 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~  614 (721)
                      ....     .....|...+..+-|+-....+++.|.|+.+.---.+.+..+-.+.  .....++..+.-   .....|..
T Consensus       104 m~~~-----r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~--~~~~~t~~~~d~---~~~fvGd~  173 (404)
T KOG1409|consen  104 MTFL-----KDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN--FETPASALQFDA---LYAFVGDH  173 (404)
T ss_pred             cchh-----hhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE--eeccCCCCceee---EEEEeccc
Confidence            1111     1122355678888888888899999998877655555555433222  111111222211   13444555


Q ss_pred             CCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCcc
Q 004969          615 DQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDPF  671 (721)
Q Consensus       615 DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l  671 (721)
                      .|.|.+-.+....+.++.++.+|.+.+ +++|.|..+.|++|..|..+.+||+-|.+.
T Consensus       174 ~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g  231 (404)
T KOG1409|consen  174 SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKG  231 (404)
T ss_pred             ccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcc
Confidence            666666666555567788888898888 999999999999999999999999987653

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.08  E-value=0.0016  Score=67.90  Aligned_cols=202  Identities=14%  Similarity=0.239  Sum_probs=119.8

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI  535 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~  535 (721)
                      +..|+|+|+++.++++....+.|..++.+ |+.++.++..+ .+-.-+|++. .++.++++.-.++.+.++++.......
T Consensus        24 ~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g-~~D~EgI~y~-g~~~~vl~~Er~~~L~~~~~~~~~~~~  100 (248)
T PF06977_consen   24 LSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDG-FGDYEGITYL-GNGRYVLSEERDQRLYIFTIDDDTTSL  100 (248)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS--SSEEEEEE--STTEEEEEETTTTEEEEEEE----TT-
T ss_pred             ccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCC-CCCceeEEEE-CCCEEEEEEcCCCcEEEEEEecccccc
Confidence            88999999667788888888999999974 88888888755 3567788886 555555555568999999995533321


Q ss_pred             cccccCcceeE--e--ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC---CcEEEE--Ec-----cccCCCeEEEEE
Q 004969          536 RGMHYGAGTVT--F--DEFDQLTSVHVNSMDELFLASGYSKNIALYDINS---GRRLQV--FA-----DMHKEHINVVKF  601 (721)
Q Consensus       536 ~~~~~~~~~~~--~--~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s---~~~v~~--l~-----~~h~~~V~sI~f  601 (721)
                      ....  .....  +  .+...+-.++|++.++.++++-...-..+|.+..   ...+..  ..     ......+.++++
T Consensus       101 ~~~~--~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~  178 (248)
T PF06977_consen  101 DRAD--VQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSY  178 (248)
T ss_dssp             -EEE--EEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEE
T ss_pred             chhh--ceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEE
Confidence            1111  00111  1  1334589999999999888887666566666653   222211  11     113456889999


Q ss_pred             cCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCC--------CCeEEEEEecCCCEEEEEeCCCcEEEE
Q 004969          602 SNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSS--------KGNVMVCFSPDDHYLLGKGSGTSMFVQ  664 (721)
Q Consensus       602 sPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~--------~~~vsl~fSpdg~~Lasgs~Dg~I~VW  664 (721)
                      +|..+++++.+.....|..+| .+++......+...        ..+-.++|.++|...++ +.-+..+++
T Consensus       179 ~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f  247 (248)
T PF06977_consen  179 DPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF  247 (248)
T ss_dssp             ETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred             cCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence            999878888888899999999 55655555665542        12337999999976664 455666655

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.08  E-value=1.5e-06  Score=97.04  Aligned_cols=201  Identities=17%  Similarity=0.304  Sum_probs=130.3

Q ss_pred             CeEEEEEeCC-CCCEEEEEECCCeEEEEECCCCeEE-EEeecCCCCCCeEEEEEeeCCCCEEEEEe----CCCeEEEEEc
Q 004969          455 RPRQFEYHPS-ISCLMVFGTLDGEIVVVNHENENIV-SYIPSFGAMNSVLGLCWLKKYPSKLIAGS----DNGSLKLYDI  528 (721)
Q Consensus       455 ~V~~lafsP~-dg~~LasGs~DG~I~IWdl~tg~~i-~~l~~~~H~~~V~sl~fsp~d~~~LaSgs----~DGtVrIWDi  528 (721)
                      .+.|+++.-. +..++++|..+|.|-+-......-. +.+. .+|....++++|++.+.+.||+|-    .|..+.|||+
T Consensus        58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~t-p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi  136 (783)
T KOG1008|consen   58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVT-PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI  136 (783)
T ss_pred             CceeehhhcCCchhhhhhccccCceEEeecCCcccccceec-ccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence            4778887763 3368999999999999887644332 2222 378889999999988888888874    3678999999


Q ss_pred             CCCCCcccccccCcceeEec--cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc-EEEEEccccCCCeEEEEEcCCC
Q 004969          529 RHMPPSIRGMHYGAGTVTFD--EFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR-RLQVFADMHKEHINVVKFSNHS  605 (721)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~--~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~-~v~~l~~~h~~~V~sI~fsPdg  605 (721)
                      .+.-..      ......|.  ......+++|-.+...+++|.....++++|++... ....+   .+..+..+...|-.
T Consensus       137 ~s~ltv------Pke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv---nTk~vqG~tVdp~~  207 (783)
T KOG1008|consen  137 NSLLTV------PKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV---NTKYVQGITVDPFS  207 (783)
T ss_pred             ccccCC------CccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh---hhhhcccceecCCC
Confidence            885220      11111111  22345688898677777777778899999999432 22222   33456677888855


Q ss_pred             CcEEEEEECCCcEEEEE-CCCCCceeEEEecCCCC-----eEEEEEecCC--CEEEEEeCCCcEEEEEcC
Q 004969          606 PSIFATSSFDQDVKLWD-LRQKPIQPCYTASSSKG-----NVMVCFSPDD--HYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       606 ~~lLaSgs~DgtIrIWD-lrs~~~~~~~~~~~~~~-----~vsl~fSpdg--~~Lasgs~Dg~I~VWDl~  667 (721)
                      +.++++-. ||.|-+|| .++-+ .++........     ...++|.|..  ...+..-..++|+.+|+.
T Consensus       208 ~nY~cs~~-dg~iAiwD~~rnie-npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  208 PNYFCSNS-DGDIAIWDTYRNIE-NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             CCceeccc-cCceeeccchhhhc-cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            56777665 99999999 44321 11222211222     3379999944  333334456688999986

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.07  E-value=0.0023  Score=65.38  Aligned_cols=186  Identities=15%  Similarity=0.121  Sum_probs=118.8

Q ss_pred             CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcce
Q 004969          465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGT  544 (721)
Q Consensus       465 dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~  544 (721)
                      +++.+++++.++.+..||..+|+.+......+......  .   ..+..++.++.++.+..+|..+++............
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~--~---~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~  109 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP--V---VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPP  109 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE--E---EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee--e---ecccccccccceeeeEecccCCcceeeeeccccccc
Confidence            45778888999999999999999988877532212221  1   245677777788999999999987644311111000


Q ss_pred             eEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCC----------eEEEEEcCCCCcEEEEEEC
Q 004969          545 VTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEH----------INVVKFSNHSPSIFATSSF  614 (721)
Q Consensus       545 ~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~----------V~sI~fsPdg~~lLaSgs~  614 (721)
                      ..   ........+  .++.++++..++.|..+|+++|+.+..... ....          +..-....++  .+..++.
T Consensus       110 ~~---~~~~~~~~~--~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~  181 (238)
T PF13360_consen  110 AG---VRSSSSPAV--DGDRLYVGTSSGKLVALDPKTGKLLWKYPV-GEPRGSSPISSFSDINGSPVISDG--RVYVSSG  181 (238)
T ss_dssp             CS---TB--SEEEE--ETTEEEEEETCSEEEEEETTTTEEEEEEES-STT-SS--EEEETTEEEEEECCTT--EEEEECC
T ss_pred             cc---cccccCceE--ecCEEEEEeccCcEEEEecCCCcEEEEeec-CCCCCCcceeeecccccceEEECC--EEEEEcC
Confidence            00   001122222  478888888899999999999999988874 3311          1222222234  5555666


Q ss_pred             CCc-EEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004969          615 DQD-VKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRG  668 (721)
Q Consensus       615 Dgt-IrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g  668 (721)
                      ++. +.+ |+.+++.  ..... ... .......++..++.++.++.+..||++.
T Consensus       182 ~g~~~~~-d~~tg~~--~w~~~-~~~-~~~~~~~~~~~l~~~~~~~~l~~~d~~t  231 (238)
T PF13360_consen  182 DGRVVAV-DLATGEK--LWSKP-ISG-IYSLPSVDGGTLYVTSSDGRLYALDLKT  231 (238)
T ss_dssp             TSSEEEE-ETTTTEE--EEEEC-SS--ECECEECCCTEEEEEETTTEEEEEETTT
T ss_pred             CCeEEEE-ECCCCCE--EEEec-CCC-ccCCceeeCCEEEEEeCCCEEEEEECCC
Confidence            664 566 9999853  23333 122 2222567888888888999999999983

...

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.06  E-value=0.00023  Score=78.23  Aligned_cols=219  Identities=10%  Similarity=0.024  Sum_probs=141.7

Q ss_pred             ccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCe----------
Q 004969          453 SFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGS----------  522 (721)
Q Consensus       453 ~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGt----------  522 (721)
                      ...+..+.||| .|.++++....| |.+|.-..+..+..+.   | ..|..+.|+ +.+.+|.+-+..+.          
T Consensus        32 ~~p~~~~~~SP-~G~~l~~~~~~~-V~~~~g~~~~~l~~~~---~-~~V~~~~fS-P~~kYL~tw~~~pi~~pe~e~sp~  104 (561)
T COG5354          32 NWPVAYVSESP-LGTYLFSEHAAG-VECWGGPSKAKLVRFR---H-PDVKYLDFS-PNEKYLVTWSREPIIEPEIEISPF  104 (561)
T ss_pred             CcchhheeecC-cchheehhhccc-eEEccccchhheeeee---c-CCceecccC-cccceeeeeccCCccChhhccCCc
Confidence            34688899999 999999988776 9999988776555554   2 468899998 78899998766544          


Q ss_pred             -----EEEEEcCCCCCcccccccCcceeEeccCCCeE-EEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCe
Q 004969          523 -----LKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLT-SVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHI  596 (721)
Q Consensus       523 -----VrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~-sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V  596 (721)
                           +.+||+.++.... ...+....      .-.+ -+.|+-++.+.+-. ....++++++...-....+.......|
T Consensus       105 ~~~n~~~vwd~~sg~iv~-sf~~~~q~------~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr~~gi  176 (561)
T COG5354         105 TSKNNVFVWDIASGMIVF-SFNGISQP------YLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIEEHPFKNLRPVGI  176 (561)
T ss_pred             cccCceeEEeccCceeEe-eccccCCc------ccccceeeeeecchhhhhh-ccCeEEEEecCCccccCchhhccccce
Confidence                 8999999876421 11111000      0012 45665566554433 345699999732211112221123567


Q ss_pred             EEEEEcCCCC-cEEEE-----EECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEe-----------CCC
Q 004969          597 NVVKFSNHSP-SIFAT-----SSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKG-----------SGT  659 (721)
Q Consensus       597 ~sI~fsPdg~-~lLaS-----gs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs-----------~Dg  659 (721)
                      ....|+|.+. ..|+.     ++.++++++|.+..+.......+. ....+.+.|.+.|.+|+.--           ...
T Consensus       177 ~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lf-k~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfges  255 (561)
T COG5354         177 LDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLF-KVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGES  255 (561)
T ss_pred             eeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeE-eecccEEEEecCCceEEEEEEEeeecccceeccc
Confidence            7888888742 22332     567889999999866544333332 22334799999999887421           124


Q ss_pred             cEEEEEcCCCccccc---ccCeEEEEECCCC
Q 004969          660 SMFVQSLRGDPFRDF---NMSILAAYTRPSS  687 (721)
Q Consensus       660 ~I~VWDl~g~~l~~~---~~~V~~v~fsP~~  687 (721)
                      .+++++++++.++..   .++|....|.|.+
T Consensus       256 nLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S  286 (561)
T COG5354         256 NLYLLRITERSIPVEKDLKDPVHDFTWEPLS  286 (561)
T ss_pred             eEEEEeecccccceeccccccceeeeecccC
Confidence            678999886655443   6799999999998

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.05  E-value=0.00022  Score=72.86  Aligned_cols=169  Identities=12%  Similarity=0.098  Sum_probs=111.2

Q ss_pred             CCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcc
Q 004969          511 PSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD  590 (721)
Q Consensus       511 ~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~  590 (721)
                      -.+|+.||..|...+|...+.+........+..-+.+     +...+-  ..-.+..++.|.++++.++.-+..-.....
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~-----~~r~cd--~~~~~~i~sndht~k~~~~~~~s~~~~~h~  156 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTL-----VKRYCD--LKFPLNIASNDHTGKTMVVSGDSNKFAVHN  156 (344)
T ss_pred             ccEEEeccccceeeeecccCcccceeeecccccchhh-----hhhhcc--cccceeeccCCcceeEEEEecCcccceeec
Confidence            4689999999999999998755422211111110000     011111  123466677888888888774433222211


Q ss_pred             ccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCc--eeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC-
Q 004969          591 MHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPI--QPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR-  667 (721)
Q Consensus       591 ~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~--~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~-  667 (721)
                       ..-.+++++++|++ .++++.+....|-.|.+.....  ..++..+...+..+.+|+.....+|++..||.+.|||++ 
T Consensus       157 -~~~~~ns~~~snd~-~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~  234 (344)
T KOG4532|consen  157 -QNLTQNSLHYSNDP-SWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRN  234 (344)
T ss_pred             -cccceeeeEEcCCC-ceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecc
Confidence             11338899999998 8999999999999998876422  222333444455578999999999999999999999998 


Q ss_pred             -CCcc------c-ccccCeEEEEECCCCC
Q 004969          668 -GDPF------R-DFNMSILAAYTRPSSK  688 (721)
Q Consensus       668 -g~~l------~-~~~~~V~~v~fsP~~~  688 (721)
                       +.+.      + .|.+.+..+.|+|.+.
T Consensus       235 ~~tpm~~~sstrp~hnGa~R~c~Fsl~g~  263 (344)
T KOG4532|consen  235 MATPMAEISSTRPHHNGAFRVCRFSLYGL  263 (344)
T ss_pred             cccchhhhcccCCCCCCceEEEEecCCCc
Confidence             2221      2 3577899999998764

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.02  E-value=0.0048  Score=67.42  Aligned_cols=204  Identities=11%  Similarity=0.089  Sum_probs=122.7

Q ss_pred             CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEe----------CCCeEEEEEcCCCCCcccccccCccee
Q 004969          476 GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS----------DNGSLKLYDIRHMPPSIRGMHYGAGTV  545 (721)
Q Consensus       476 G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs----------~DGtVrIWDi~~~~~~~~~~~~~~~~~  545 (721)
                      |+|.+.|..+++.+.++.. |....  .+ ++ ++++.++.+.          .+..|.+||..+.+..-....+...  
T Consensus        27 ~~v~ViD~~~~~v~g~i~~-G~~P~--~~-~s-pDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p--   99 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDG-GFLPN--PV-VA-SDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP--   99 (352)
T ss_pred             ceEEEEECCCCEEEEEEEc-cCCCc--ee-EC-CCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc--
Confidence            8999999999999988874 32222  23 66 6676665554          4789999999997652111111000  


Q ss_pred             EeccCCCeEEEEEecCCCEEEEEe-C-CCcEEEEECCCCcEEEEEcccc------------------------------C
Q 004969          546 TFDEFDQLTSVHVNSMDELFLASG-Y-SKNIALYDINSGRRLQVFADMH------------------------------K  593 (721)
Q Consensus       546 ~~~~~~~V~sv~~sp~~~~lls~g-~-Dg~IrlWDl~s~~~v~~l~~~h------------------------------~  593 (721)
                      .+.....-..++++|+|..+++.. . +..|.++|+.+++.+.++.-+-                              .
T Consensus       100 ~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~  179 (352)
T TIGR02658       100 RFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGN  179 (352)
T ss_pred             hhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCc
Confidence            011111234678889999988776 3 7889999999887766443100                              0


Q ss_pred             CCeEEEE--------------EcC-CCCcEEEEEECCCcEEEEECCCCCcee-----EEEecC------CCCeEEEEEec
Q 004969          594 EHINVVK--------------FSN-HSPSIFATSSFDQDVKLWDLRQKPIQP-----CYTASS------SKGNVMVCFSP  647 (721)
Q Consensus       594 ~~V~sI~--------------fsP-dg~~lLaSgs~DgtIrIWDlrs~~~~~-----~~~~~~------~~~~vsl~fSp  647 (721)
                      ..+....              |.+ +| .++.+... |+|.+.|+.......     ......      ..++--++++|
T Consensus       180 ~~~~~~~vf~~~~~~v~~rP~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~  257 (352)
T TIGR02658       180 PKIKPTEVFHPEDEYLINHPAYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR  257 (352)
T ss_pred             eEEeeeeeecCCccccccCCceEcCCC-cEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC
Confidence            0011111              123 55 45544444 999999965432211     111110      11111389999


Q ss_pred             CCCEEEEEe----------CCCcEEEEEcCCCc-ccc--cccCeEEEEECCCCC
Q 004969          648 DDHYLLGKG----------SGTSMFVQSLRGDP-FRD--FNMSILAAYTRPSSK  688 (721)
Q Consensus       648 dg~~Lasgs----------~Dg~I~VWDl~g~~-l~~--~~~~V~~v~fsP~~~  688 (721)
                      +|+.+++..          ..+.|.++|..... +..  ....+..++++|+++
T Consensus       258 dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgk  311 (352)
T TIGR02658       258 ARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAK  311 (352)
T ss_pred             CCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCC
Confidence            999888743          12478899987433 332  255889999999995

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=97.99  E-value=2.5e-05  Score=56.59  Aligned_cols=39  Identities=23%  Similarity=0.482  Sum_probs=34.8

Q ss_pred             CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEE
Q 004969          486 ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYD  527 (721)
Q Consensus       486 g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWD  527 (721)
                      |+++.++.  +|.+.|++|+|+ +++.+|++|+.|++|++||
T Consensus         1 g~~~~~~~--~h~~~i~~i~~~-~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFR--GHSSSINSIAWS-PDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEE--SSSSSEEEEEEE-TTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEc--CCCCcEEEEEEe-cccccceeeCCCCEEEEEC
Confidence            35667777  899999999998 6799999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=97.97  E-value=3e-05  Score=87.91  Aligned_cols=220  Identities=15%  Similarity=0.243  Sum_probs=144.8

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCCC-eEEEEeecCCCCCCeEEEEEeeCC--CCEEEEEeCCCeEEEEEcCCCC
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENE-NIVSYIPSFGAMNSVLGLCWLKKY--PSKLIAGSDNGSLKLYDIRHMP  532 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg-~~i~~l~~~~H~~~V~sl~fsp~d--~~~LaSgs~DGtVrIWDi~~~~  532 (721)
                      +.++..+| .|.-+|.++.-| +.+.|+... .....+.. -..-.|-.+.|+|..  ...+++.+...+ .+|++....
T Consensus        27 ~~a~si~p-~grdi~lAsr~g-l~i~dld~p~~ppr~l~h-~tpw~vad~qws~h~a~~~wiVsts~qka-iiwnlA~ss  102 (1081)
T KOG0309|consen   27 FNAVSINP-SGRDIVLASRQG-LYIIDLDDPFTPPRWLHH-ITPWQVADVQWSPHPAKPYWIVSTSNQKA-IIWNLAKSS  102 (1081)
T ss_pred             ccceeecc-ccchhhhhhhcC-eEEEeccCCCCCceeeec-cCcchhcceecccCCCCceeEEecCcchh-hhhhhhcCC
Confidence            45677889 788888888887 666676542 33232321 223457778887532  335666655544 489887633


Q ss_pred             CcccccccCcceeEeccCCCeEEEEEecCCCEEEE-EeCCCcEEEEECCCC-cEEEEEccccCCCeEEEEEcCCCCcEEE
Q 004969          533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLA-SGYSKNIALYDINSG-RRLQVFADMHKEHINVVKFSNHSPSIFA  610 (721)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls-~g~Dg~IrlWDl~s~-~~v~~l~~~h~~~V~sI~fsPdg~~lLa  610 (721)
                      ..      ....+...|...|+.+-|+++.+.+++ ++-|..+..||+++. .++..+.. -......|+|+...++.+|
T Consensus       103 ~~------aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~-w~s~asqVkwnyk~p~vla  175 (1081)
T KOG0309|consen  103 SN------AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSS-WRSAASQVKWNYKDPNVLA  175 (1081)
T ss_pred             cc------ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeec-ccccCceeeecccCcchhh
Confidence            21      122344456678999999998866555 556999999999985 45666554 4456778999988865555


Q ss_pred             EEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEec-CCCEEEEEeCCCcEEEEEcCCCc-----ccccccCeEEEEE
Q 004969          611 TSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSP-DDHYLLGKGSGTSMFVQSLRGDP-----FRDFNMSILAAYT  683 (721)
Q Consensus       611 Sgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSp-dg~~Lasgs~Dg~I~VWDl~g~~-----l~~~~~~V~~v~f  683 (721)
                       .+..+.|++||++.+. .+...+.+|...+ ++.|.. --..+.+.+.|++++.||.....     ..+...++....+
T Consensus       176 -sshg~~i~vwd~r~gs-~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~  253 (1081)
T KOG0309|consen  176 -SSHGNDIFVWDLRKGS-TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRY  253 (1081)
T ss_pred             -hccCCceEEEeccCCC-cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccc
Confidence             4556779999999874 5677777776666 677765 23456678889999999987322     1122446666666


Q ss_pred             CCCCC
Q 004969          684 RPSSK  688 (721)
Q Consensus       684 sP~~~  688 (721)
                      -|-+.
T Consensus       254 ~Pfg~  258 (1081)
T KOG0309|consen  254 LPFGE  258 (1081)
T ss_pred             cccCc
Confidence            66653

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.96  E-value=3.4e-05  Score=83.36  Aligned_cols=211  Identities=14%  Similarity=0.131  Sum_probs=137.6

Q ss_pred             CCCEEEEEECCCeEEEEECCCCeEEEEe-ecCCCCCCeEEEEEeeCCCCEEEEEeC-CCeEEEEEcCCCCCc-ccccccC
Q 004969          465 ISCLMVFGTLDGEIVVVNHENENIVSYI-PSFGAMNSVLGLCWLKKYPSKLIAGSD-NGSLKLYDIRHMPPS-IRGMHYG  541 (721)
Q Consensus       465 dg~~LasGs~DG~I~IWdl~tg~~i~~l-~~~~H~~~V~sl~fsp~d~~~LaSgs~-DGtVrIWDi~~~~~~-~~~~~~~  541 (721)
                      -.+++.+++.||.++.|--..-..+..+ ....|...|.+++-+ .++-++.|++. |..++++|++.-... ...+...
T Consensus        19 ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S-~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~l   97 (558)
T KOG0882|consen   19 KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVS-YDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDL   97 (558)
T ss_pred             hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhcc-ccceeEeeccCcccceeEEEeeccchhhhcccccC
Confidence            4589999999999999986531211111 123778888888876 78888999787 999999999874431 1111111


Q ss_pred             cceeEeccCCCeEEEEEecCCC---EEEEEe-CCCcEEEEECCCCc-EEEEEccccCCCeEEEEEcCCCCcEEEEEECCC
Q 004969          542 AGTVTFDEFDQLTSVHVNSMDE---LFLASG-YSKNIALYDINSGR-RLQVFADMHKEHINVVKFSNHSPSIFATSSFDQ  616 (721)
Q Consensus       542 ~~~~~~~~~~~V~sv~~sp~~~---~lls~g-~Dg~IrlWDl~s~~-~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~Dg  616 (721)
                      .+.        +.  .++..|+   .++++. .++.+.++|-.... ....+.+.|..+|..+.++|.+ ..+++....|
T Consensus        98 Pg~--------a~--wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~-Ds~vSiD~~g  166 (558)
T KOG0882|consen   98 PGF--------AE--WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAG-DSAVSIDISG  166 (558)
T ss_pred             CCc--------eE--EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccc-cceeeccccc
Confidence            111        11  1112231   333333 47999999988644 5556666799999999999998 7888888889


Q ss_pred             cEEEEECCCCCce----eE---------EEec-CCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC-CcccccccCeEEE
Q 004969          617 DVKLWDLRQKPIQ----PC---------YTAS-SSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRG-DPFRDFNMSILAA  681 (721)
Q Consensus       617 tIrIWDlrs~~~~----~~---------~~~~-~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g-~~l~~~~~~V~~v  681 (721)
                      .|.-|.....-..    ..         +.+. ....+.++.|+|+|..+.+-+.|..|+++.+++ +..+.+.......
T Consensus       167 mVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~  246 (558)
T KOG0882|consen  167 MVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDA  246 (558)
T ss_pred             eeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhh
Confidence            9999988731000    01         1111 122334899999999999999999999999884 3333333333333


Q ss_pred             EECCCC
Q 004969          682 YTRPSS  687 (721)
Q Consensus       682 ~fsP~~  687 (721)
                      ++-|..
T Consensus       247 ~~q~ks  252 (558)
T KOG0882|consen  247 QYQPKS  252 (558)
T ss_pred             hhcccc
Confidence            333433

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.94  E-value=0.00088  Score=74.00  Aligned_cols=180  Identities=9%  Similarity=0.022  Sum_probs=110.9

Q ss_pred             CEEEEEECCCeEEEEECCCCeEEEEeecCCCC--CC---eEEEEEee-CCCCEEEEEeCCCeEEEEEcCCCCCccccccc
Q 004969          467 CLMVFGTLDGEIVVVNHENENIVSYIPSFGAM--NS---VLGLCWLK-KYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHY  540 (721)
Q Consensus       467 ~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~--~~---V~sl~fsp-~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~  540 (721)
                      ..++.+..+|.+..+|..+|+.+.......-.  ..   ...+.-+| ..+..++.++.+|.+..||..+++......  
T Consensus       191 ~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~--  268 (377)
T TIGR03300       191 GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD--  268 (377)
T ss_pred             CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec--
Confidence            46788888999999999999876554321000  00   00000000 134678888899999999998876432111  


Q ss_pred             CcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEE
Q 004969          541 GAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKL  620 (721)
Q Consensus       541 ~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrI  620 (721)
                              .. ......  ..++.+++++.+|.+..+|..+|+.+............+...  .+ ..+++++.+|.+++
T Consensus       269 --------~~-~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g-~~l~~~~~~G~l~~  334 (377)
T TIGR03300       269 --------AS-SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VG-GYLVVGDFEGYLHW  334 (377)
T ss_pred             --------cC-CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--EC-CEEEEEeCCCEEEE
Confidence                    00 111122  257788888899999999999999887764211222222222  24 47888999999999


Q ss_pred             EECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 004969          621 WDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQ  664 (721)
Q Consensus       621 WDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VW  664 (721)
                      ||..+++..............+..+.  +..|+.++.||.|+.|
T Consensus       335 ~d~~tG~~~~~~~~~~~~~~~sp~~~--~~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       335 LSREDGSFVARLKTDGSGIASPPVVV--GDGLLVQTRDGDLYAF  376 (377)
T ss_pred             EECCCCCEEEEEEcCCCccccCCEEE--CCEEEEEeCCceEEEe
Confidence            99999866443333221111133333  3457788889998765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.92  E-value=0.0004  Score=78.12  Aligned_cols=117  Identities=14%  Similarity=0.185  Sum_probs=85.1

Q ss_pred             CeEEEEEeeCCCCEEEEE----eCCCeE----EEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC
Q 004969          500 SVLGLCWLKKYPSKLIAG----SDNGSL----KLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS  571 (721)
Q Consensus       500 ~V~sl~fsp~d~~~LaSg----s~DGtV----rIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D  571 (721)
                      ...++.|+...+..+.|.    +.+|.+    .+|++..++.  +    .....++.....|.+.+++|+...++.|+.|
T Consensus       207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~kl--q----rvsvtsipL~s~v~~ca~sp~E~kLvlGC~D  280 (545)
T PF11768_consen  207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKL--Q----RVSVTSIPLPSQVICCARSPSEDKLVLGCED  280 (545)
T ss_pred             CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCce--e----EEEEEEEecCCcceEEecCcccceEEEEecC
Confidence            346677774455555553    233432    3455554322  1    1234566677889999999999999999999


Q ss_pred             CcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCC
Q 004969          572 KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQK  626 (721)
Q Consensus       572 g~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~  626 (721)
                      |+|.+||...+..... +  ..-.++.++|+|+| .++++|+.-|.+.+||+.-.
T Consensus       281 gSiiLyD~~~~~t~~~-k--a~~~P~~iaWHp~g-ai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  281 GSIILYDTTRGVTLLA-K--AEFIPTLIAWHPDG-AIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             CeEEEEEcCCCeeeee-e--ecccceEEEEcCCC-cEEEEEcCCceEEEEEeecC
Confidence            9999999987754433 2  45668899999999 79999999999999998764

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.91  E-value=5.9e-06  Score=66.64  Aligned_cols=56  Identities=29%  Similarity=0.541  Sum_probs=42.0

Q ss_pred             eEeecccccccccc--cccccceeeEEecccccccccccccccccccccchhccccccc
Q 004969          128 EVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRV  184 (721)
Q Consensus       128 ~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (721)
                      +.|+|++|+|+.+.  .+..+++|++|+|. +|.|+.++.+.|..||+|+.|.|.+|++
T Consensus         4 ~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~-~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    4 ESLDLSNNKLTEIPPDSFSNLPNLETLDLS-NNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             SEEEETSSTESEECTTTTTTGTTESEEEET-SSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cEEECCCCCCCccCHHHHcCCCCCCEeEcc-CCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            45777777777776  55677777777777 7777777777777777777777777764

...

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.90  E-value=0.00018  Score=77.07  Aligned_cols=156  Identities=15%  Similarity=0.185  Sum_probs=99.5

Q ss_pred             cCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969          454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~  533 (721)
                      ..|+.++|+|.+..++..++.+..|+|.|+++...+..+.  .| ..+++.+|.-.+.+++++|-..|.|.|||++....
T Consensus       194 ~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~--a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~  270 (463)
T KOG1645|consen  194 SFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI--AY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEG  270 (463)
T ss_pred             hhhhhhccCccccceeeeeccCceEEEEecccceeeehee--cc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCc
Confidence            3589999999777799999999999999999988888776  44 78999999867778999999999999999998765


Q ss_pred             cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC--CcEEEEEccccCCCeEEEEEcCCCCcEEEE
Q 004969          534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINS--GRRLQVFADMHKEHINVVKFSNHSPSIFAT  611 (721)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s--~~~v~~l~~~h~~~V~sI~fsPdg~~lLaS  611 (721)
                      .+..+.+........+-.++..-...+.++.++.+..+  ...|.+..  +.....+.-...+...++++.+-...+++|
T Consensus       271 ~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~t  348 (463)
T KOG1645|consen  271 PLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLLT  348 (463)
T ss_pred             hHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccceEEEE
Confidence            44433321111111000111111222445555544433  44565542  233333332245566667776655455665


Q ss_pred             EEC
Q 004969          612 SSF  614 (721)
Q Consensus       612 gs~  614 (721)
                      .-.
T Consensus       349 yRs  351 (463)
T KOG1645|consen  349 YRS  351 (463)
T ss_pred             ecC
Confidence            544

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.89  E-value=0.0068  Score=64.41  Aligned_cols=221  Identities=12%  Similarity=0.116  Sum_probs=133.9

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCe-EEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeC-----CCeEEEEEc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGE-IVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD-----NGSLKLYDI  528 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~-I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~-----DGtVrIWDi  528 (721)
                      +...++.+|..+..++.+-.-|+ ..+||..+|+....+.......---.-.|+ +++++|++.-.     .|.|-|||.
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs-~dG~~LytTEnd~~~g~G~IgVyd~   84 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFS-PDGRLLYTTENDYETGRGVIGVYDA   84 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEc-CCCCEEEEeccccCCCcEEEEEEEC
Confidence            35567889978888888888875 478999999988777642111111134677 78999988644     489999999


Q ss_pred             CCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe------------------CCCcEEEEECCCCcEEEEEc-
Q 004969          529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG------------------YSKNIALYDINSGRRLQVFA-  589 (721)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g------------------~Dg~IrlWDl~s~~~v~~l~-  589 (721)
                      ..+-..+..+..+.        -.-..+.+.|++..++++-                  .+.++.+.|..+|+.+.... 
T Consensus        85 ~~~~~ri~E~~s~G--------IGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~L  156 (305)
T PF07433_consen   85 ARGYRRIGEFPSHG--------IGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVEL  156 (305)
T ss_pred             cCCcEEEeEecCCC--------cChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeec
Confidence            94322211111100        0123455667776666551                  13456677888888776633 


Q ss_pred             --cccCCCeEEEEEcCCCCcEEEEEECCC-------cEEEEECCCCCceeEEEec-----CCCCeE-EEEEecCCCEEEE
Q 004969          590 --DMHKEHINVVKFSNHSPSIFATSSFDQ-------DVKLWDLRQKPIQPCYTAS-----SSKGNV-MVCFSPDDHYLLG  654 (721)
Q Consensus       590 --~~h~~~V~sI~fsPdg~~lLaSgs~Dg-------tIrIWDlrs~~~~~~~~~~-----~~~~~v-sl~fSpdg~~Las  654 (721)
                        ..|...|..+++.++| ..++..-..|       -+-+++....  ...+..+     .-.+.+ +++++++|.++++
T Consensus       157 p~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~  233 (305)
T PF07433_consen  157 PPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAV  233 (305)
T ss_pred             CccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEEEEeCCCCEEEE
Confidence              2377789999999998 4443333222       1333433321  1111111     122445 8999999998877


Q ss_pred             EeC-CCcEEEEEcC-CCccccccc-CeEEEEECCCC
Q 004969          655 KGS-GTSMFVQSLR-GDPFRDFNM-SILAAYTRPSS  687 (721)
Q Consensus       655 gs~-Dg~I~VWDl~-g~~l~~~~~-~V~~v~fsP~~  687 (721)
                      ++- .|.+.+||.. |..+..+.. .+..++-.+++
T Consensus       234 tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~~  269 (305)
T PF07433_consen  234 TSPRGGRVAVWDAATGRLLGSVPLPDACGVAPTDDG  269 (305)
T ss_pred             ECCCCCEEEEEECCCCCEeeccccCceeeeeecCCc
Confidence            765 5578999987 433333322 45556666665

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.84  E-value=0.014  Score=60.34  Aligned_cols=184  Identities=13%  Similarity=0.143  Sum_probs=116.7

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeec--CC-CCCCeEEEEEeeCCCCEEEEEeCC--------CeEE
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPS--FG-AMNSVLGLCWLKKYPSKLIAGSDN--------GSLK  524 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~--~~-H~~~V~sl~fsp~d~~~LaSgs~D--------GtVr  524 (721)
                      +..+.+...+ ..++.+...+ +.++|..+++.......  .. .....+.+++. +++++.++....        |.|.
T Consensus        42 ~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd-~~G~ly~t~~~~~~~~~~~~g~v~  118 (246)
T PF08450_consen   42 PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVD-PDGNLYVTDSGGGGASGIDPGSVY  118 (246)
T ss_dssp             EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE--TTS-EEEEEECCBCTTCGGSEEEE
T ss_pred             CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEc-CCCCEEEEecCCCccccccccceE
Confidence            6678888425 4455555555 56669998876554443  12 34668899997 678877776544        4566


Q ss_pred             EEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcE----EEEEccc--cCCCeE
Q 004969          525 LYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRR----LQVFADM--HKEHIN  597 (721)
Q Consensus       525 IWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~----v~~l~~~--h~~~V~  597 (721)
                      .++.. ++.          ..........+.++|+|++..++++. ..+.|..+|+.....    ...+...  ..+...
T Consensus       119 ~~~~~-~~~----------~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pD  187 (246)
T PF08450_consen  119 RIDPD-GKV----------TVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPD  187 (246)
T ss_dssp             EEETT-SEE----------EEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEE
T ss_pred             EECCC-CeE----------EEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCC
Confidence            66665 221          11122223468999999999887655 578899999863221    1222211  223478


Q ss_pred             EEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEe-cCCCEEEEEe
Q 004969          598 VVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFS-PDDHYLLGKG  656 (721)
Q Consensus       598 sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fS-pdg~~Lasgs  656 (721)
                      .+++..+| ++.++....+.|.++|.. ++......++. ..+++++|. ++.+.|+..+
T Consensus       188 G~~vD~~G-~l~va~~~~~~I~~~~p~-G~~~~~i~~p~-~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  188 GLAVDSDG-NLWVADWGGGRIVVFDPD-GKLLREIELPV-PRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEEEBTTS--EEEEEETTTEEEEEETT-SCEEEEEE-SS-SSEEEEEEESTTSSEEEEEE
T ss_pred             cceEcCCC-CEEEEEcCCCEEEEECCC-ccEEEEEcCCC-CCEEEEEEECCCCCEEEEEe
Confidence            89999999 788888889999999988 66555556653 466789994 6767666544

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.83  E-value=0.00037  Score=79.00  Aligned_cols=218  Identities=11%  Similarity=0.053  Sum_probs=149.1

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|.-+.|+. ..+.+-+...+|.|.||-+..|.....+......+-|.+++|+ .+|..+...-.||.|.+=.+++.+.-
T Consensus        73 sV~vvTWNe-~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn-~dG~kIcIvYeDGavIVGsvdGNRIw  150 (1189)
T KOG2041|consen   73 SVMVVTWNE-NNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWN-LDGTKICIVYEDGAVIVGSVDGNRIW  150 (1189)
T ss_pred             eEEEEEecc-ccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEc-CCCcEEEEEEccCCEEEEeeccceec
Confidence            588899999 7788899999999999999888765444433456778999998 89999999999999988777764321


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC-------cEEEEEccc---cCCCeEEEEEc--
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSG-------RRLQVFADM---HKEHINVVKFS--  602 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~-------~~v~~l~~~---h~~~V~sI~fs--  602 (721)
                      -+.+.+          .....+.|+++...++.+-..|.+++||....       .+.....++   ....|..+.|.  
T Consensus       151 gKeLkg----------~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g  220 (1189)
T KOG2041|consen  151 GKELKG----------QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTG  220 (1189)
T ss_pred             chhcch----------heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccC
Confidence            111111          12457889998888888888899999997642       111111111   22345666664  


Q ss_pred             ------CCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCC---------CcEEEEEcC
Q 004969          603 ------NHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG---------TSMFVQSLR  667 (721)
Q Consensus       603 ------Pdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D---------g~I~VWDl~  667 (721)
                            |+. -.++.+-..|.+.|..-.+.. .|+.. ......+...|+++|.+|+++|.+         +.|.+|.--
T Consensus       221 ~~~~v~pdr-P~lavcy~nGr~QiMR~eND~-~Pvv~-dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~  297 (1189)
T KOG2041|consen  221 PYQPVPPDR-PRLAVCYANGRMQIMRSENDP-EPVVV-DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY  297 (1189)
T ss_pred             ccccCCCCC-CEEEEEEcCceehhhhhcCCC-CCeEE-ecccEeecceecCCCcEEEEccCcccccCccccceEEEeccc
Confidence                  455 478899999999887665543 33332 223556689999999999988764         256777665


Q ss_pred             CCccccc---ccCeEEEEECCCC
Q 004969          668 GDPFRDF---NMSILAAYTRPSS  687 (721)
Q Consensus       668 g~~l~~~---~~~V~~v~fsP~~  687 (721)
                      |+-+..+   ...|.++.|--.+
T Consensus       298 G~i~gtlkvpg~~It~lsWEg~g  320 (1189)
T KOG2041|consen  298 GHIVGTLKVPGSCITGLSWEGTG  320 (1189)
T ss_pred             hhheEEEecCCceeeeeEEcCCc
Confidence            6554433   3456777775544

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=97.82  E-value=0.0018  Score=71.97  Aligned_cols=225  Identities=9%  Similarity=0.098  Sum_probs=128.6

Q ss_pred             cCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC-----------Ce
Q 004969          454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN-----------GS  522 (721)
Q Consensus       454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D-----------Gt  522 (721)
                      +.=+-+.||| .|.+|++-...| |.+|--++-..++.+   .|. .|.-+.|+ |..++|+|-|..           ..
T Consensus       211 WTetyv~wSP-~GTYL~t~Hk~G-I~lWGG~~f~r~~RF---~Hp-~Vq~idfS-P~EkYLVT~s~~p~~~~~~d~e~~~  283 (698)
T KOG2314|consen  211 WTETYVRWSP-KGTYLVTFHKQG-IALWGGESFDRIQRF---YHP-GVQFIDFS-PNEKYLVTYSPEPIIVEEDDNEGQQ  283 (698)
T ss_pred             ceeeeEEecC-CceEEEEEeccc-eeeecCccHHHHHhc---cCC-CceeeecC-CccceEEEecCCccccCcccCCCce
Confidence            3456689999 999999998888 899986554444444   454 58889998 688999986532           57


Q ss_pred             EEEEEcCCCCCcccccc--cC---------------------cceeEec------------cCCCeEEEEEecCCCEEEE
Q 004969          523 LKLYDIRHMPPSIRGMH--YG---------------------AGTVTFD------------EFDQLTSVHVNSMDELFLA  567 (721)
Q Consensus       523 VrIWDi~~~~~~~~~~~--~~---------------------~~~~~~~------------~~~~V~sv~~sp~~~~lls  567 (721)
                      ++|||+.+|...-....  ..                     .+...+.            ....|....|+|.+..++.
T Consensus       284 l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAY  363 (698)
T KOG2314|consen  284 LIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAY  363 (698)
T ss_pred             EEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEE
Confidence            89999999765211000  00                     0000000            1122444445554444443


Q ss_pred             EeC-----CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE----------ECCCcEEEEECCCCCceeEE
Q 004969          568 SGY-----SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS----------SFDQDVKLWDLRQKPIQPCY  632 (721)
Q Consensus       568 ~g~-----Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg----------s~DgtIrIWDlrs~~~~~~~  632 (721)
                      =..     -..+.+-.+.+++.+++-.- |.-.=..+.|-..| .+|+.-          +.=..+.|+.++.. ..++-
T Consensus       364 wtpe~~~~parvtL~evPs~~~iRt~nl-fnVsDckLhWQk~g-dyLcvkvdR~tK~~~~g~f~n~eIfrireK-dIpve  440 (698)
T KOG2314|consen  364 WTPETNNIPARVTLMEVPSKREIRTKNL-FNVSDCKLHWQKSG-DYLCVKVDRHTKSKVKGQFSNLEIFRIREK-DIPVE  440 (698)
T ss_pred             EcccccCCcceEEEEecCccceeeeccc-eeeeccEEEeccCC-cEEEEEEEeeccccccceEeeEEEEEeecc-CCCce
Confidence            221     12344444444444443332 22222345566666 344432          11123566666654 34555


Q ss_pred             EecCCCCeEEEEEecCCCEEEEEeC---CCcEEEEEcCCC--c---cccc-ccCeEEEEECCCCC
Q 004969          633 TASSSKGNVMVCFSPDDHYLLGKGS---GTSMFVQSLRGD--P---FRDF-NMSILAAYTRPSSK  688 (721)
Q Consensus       633 ~~~~~~~~vsl~fSpdg~~Lasgs~---Dg~I~VWDl~g~--~---l~~~-~~~V~~v~fsP~~~  688 (721)
                      .+.-....+..+|-|.|..+++-+.   ..++.+|.+...  .   ++.+ ....+.+.|+|.|+
T Consensus       441 ~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~  505 (698)
T KOG2314|consen  441 VVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGR  505 (698)
T ss_pred             eeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCc
Confidence            5555556668999999988776543   347888887722  1   2222 34677899999993

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.80  E-value=0.0036  Score=72.93  Aligned_cols=199  Identities=15%  Similarity=0.195  Sum_probs=123.2

Q ss_pred             EeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCC-eEEEEEeeCCCCEEEEEeCCC-----eEEEEEcCCCCCc
Q 004969          461 YHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNS-VLGLCWLKKYPSKLIAGSDNG-----SLKLYDIRHMPPS  534 (721)
Q Consensus       461 fsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~-V~sl~fsp~d~~~LaSgs~DG-----tVrIWDi~~~~~~  534 (721)
                      |++ .+..+|.|+.+|.|.+.+-. -+.++.++  ++... |..+ |.-...++|++.+.|+     .++||+++.-+..
T Consensus        31 ~~s-~~~~vvigt~~G~V~~Ln~s-~~~~~~fq--a~~~siv~~L-~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n  105 (933)
T KOG2114|consen   31 CSS-STGSVVIGTADGRVVILNSS-FQLIRGFQ--AYEQSIVQFL-YILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN  105 (933)
T ss_pred             EcC-CCceEEEeeccccEEEeccc-ceeeehhe--ecchhhhhHh-hcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence            566 77899999999988887743 33446666  44444 4444 3324446888887765     5999999874321


Q ss_pred             c--cccccCccee--Ee-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC--C--CcEEEEEccccCCCeEEEEEcCCC
Q 004969          535 I--RGMHYGAGTV--TF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDIN--S--GRRLQVFADMHKEHINVVKFSNHS  605 (721)
Q Consensus       535 ~--~~~~~~~~~~--~~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~--s--~~~v~~l~~~h~~~V~sI~fsPdg  605 (721)
                      -  .-...+. ..  .+ ....++.+++++.+-..++.|-.+|.|..+.-.  .  |... .+......+|+++++..++
T Consensus       106 ~sP~c~~~~r-i~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~-~~~~~~~~pITgL~~~~d~  183 (933)
T KOG2114|consen  106 NSPQCLYEHR-IFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQ-DYSHRGKEPITGLALRSDG  183 (933)
T ss_pred             CCcceeeeee-eeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccce-eeeccCCCCceeeEEecCC
Confidence            1  0000000 01  11 134678999998887777777789999988422  1  2211 1221256799999999888


Q ss_pred             CcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004969          606 PSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGD  669 (721)
Q Consensus       606 ~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~  669 (721)
                      ...+.++. -..|.+|.+.... .....+..++... +.++++....+++++ +..+++|+..+.
T Consensus       184 ~s~lFv~T-t~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~  245 (933)
T KOG2114|consen  184 KSVLFVAT-TEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGR  245 (933)
T ss_pred             ceeEEEEe-cceeEEEEecCCC-cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCc
Confidence            54333333 3569999998543 2233355555555 777776555455555 568999998754

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.79  E-value=0.0018  Score=79.53  Aligned_cols=199  Identities=15%  Similarity=0.157  Sum_probs=129.2

Q ss_pred             eEEEEEeCCCCCEEEEEEC---C---CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeC---CCeEEEE
Q 004969          456 PRQFEYHPSISCLMVFGTL---D---GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD---NGSLKLY  526 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~---D---G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~---DGtVrIW  526 (721)
                      -..|+|-. ||.++|+.+.   .   +.|+||+-+ |....+-.  .-.+--.+++|- |.|+++++...   ...|.+|
T Consensus       212 ~~~ISWRG-DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE--~v~gLe~~l~Wr-PsG~lIA~~q~~~~~~~VvFf  286 (928)
T PF04762_consen  212 RVRISWRG-DGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE--PVDGLEGALSWR-PSGNLIASSQRLPDRHDVVFF  286 (928)
T ss_pred             ceEEEECC-CCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccc--cCCCccCCccCC-CCCCEEEEEEEcCCCcEEEEE
Confidence            34689999 9999999875   2   589999987 65544332  222334578997 78898888764   3456666


Q ss_pred             EcCCCCCcccccccCcceeEe-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc--EEEEEccccCCCeEEEEEcC
Q 004969          527 DIRHMPPSIRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR--RLQVFADMHKEHINVVKFSN  603 (721)
Q Consensus       527 Di~~~~~~~~~~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~--~v~~l~~~h~~~V~sI~fsP  603 (721)
                      .-++-+.       ..-...+ .....|..+.|++++..+++.-.|. |.+|-..+-.  ..+.+.-.....+..+.|+|
T Consensus       287 ErNGLrh-------geF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdp  358 (928)
T PF04762_consen  287 ERNGLRH-------GEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDP  358 (928)
T ss_pred             ecCCcEe-------eeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECC
Confidence            6554221       1111122 2234689999999999998877655 9999988754  22333321334455699999


Q ss_pred             CCCcEEEEEECCCcEEEEEC----CCCC------------------------------ceeEEEecCCCCeEEEEEecCC
Q 004969          604 HSPSIFATSSFDQDVKLWDL----RQKP------------------------------IQPCYTASSSKGNVMVCFSPDD  649 (721)
Q Consensus       604 dg~~lLaSgs~DgtIrIWDl----rs~~------------------------------~~~~~~~~~~~~~vsl~fSpdg  649 (721)
                      ..+..+.....+|.+..++.    ..+.                              +...+.+.-...++.++|++++
T Consensus       359 e~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~  438 (928)
T PF04762_consen  359 EKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSN  438 (928)
T ss_pred             CCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCC
Confidence            98887888777676655443    2110                              0011222233344589999999


Q ss_pred             CEEEEEeCCCcEEEEEcC
Q 004969          650 HYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       650 ~~Lasgs~Dg~I~VWDl~  667 (721)
                      ..+++-..||.+.+|...
T Consensus       439 ~~~avl~~d~~l~~~~~~  456 (928)
T PF04762_consen  439 SRFAVLTSDGSLSIYEWD  456 (928)
T ss_pred             CeEEEEECCCCEEEEEec
Confidence            889999999999988854

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.75  E-value=1.6e-05  Score=78.36  Aligned_cols=104  Identities=25%  Similarity=0.368  Sum_probs=54.4

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccc--cccccceeeEEecccccccccccc-cccccccccch
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKE-DCFSCMPNLIC  176 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~  176 (721)
                      .+|+++||.++...+  +..|.. =..=+.|+|++|+|..+.  +...|++|++|.|. +|.|..+.+ ...+++|+|+.
T Consensus        42 ~~L~~L~Ls~N~I~~--l~~l~~-L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~-~N~I~~l~~l~~L~~l~~L~~  117 (175)
T PF14580_consen   42 DKLEVLDLSNNQITK--LEGLPG-LPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS-NNKISDLNELEPLSSLPKLRV  117 (175)
T ss_dssp             TT--EEE-TTS--S----TT-----TT--EEE--SS---S-CHHHHHH-TT--EEE-T-TS---SCCCCGGGGG-TT--E
T ss_pred             cCCCEEECCCCCCcc--ccCccC-hhhhhhcccCCCCCCccccchHHhCCcCCEEECc-CCcCCChHHhHHHHcCCCcce
Confidence            378999999965543  332222 011267999999999995  33469999999999 999999998 88999999999


Q ss_pred             hccccccchhhhH-HHHHhhcCCcchhhccce
Q 004969          177 LSMCETRVGNLWT-TIAALSKLPSLAELRFQN  207 (721)
Q Consensus       177 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  207 (721)
                      |+|++|-|.+.=. -.-.+.+||+|+-|.++.
T Consensus       118 L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen  118 LSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             EE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             eeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence            9999999986511 124578999999997654

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.73  E-value=0.0028  Score=69.98  Aligned_cols=182  Identities=14%  Similarity=0.083  Sum_probs=112.4

Q ss_pred             CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcce
Q 004969          465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGT  544 (721)
Q Consensus       465 dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~  544 (721)
                      .+..+++++.+|.|.-+|..+|+.+......+.  ......   .++..++.++.+|.+..+|..+++.......     
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~--~~~~p~---v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~-----  133 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDER--LSGGVG---ADGGLVFVGTEKGEVIALDAEDGKELWRAKL-----  133 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCCC--cccceE---EcCCEEEEEcCCCEEEEEECCCCcEeeeecc-----
Confidence            357888999999999999999998877654321  111222   2467788889999999999988765332111     


Q ss_pred             eEeccCCCeEE-EEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCe-----EEEEEcCCCCcEEEEEECCCcE
Q 004969          545 VTFDEFDQLTS-VHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHI-----NVVKFSNHSPSIFATSSFDQDV  618 (721)
Q Consensus       545 ~~~~~~~~V~s-v~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V-----~sI~fsPdg~~lLaSgs~DgtI  618 (721)
                           ...+.+ ...  .++.+++++.++.+..||.++|+.+..+.. .....     .+.... ++  .++.+..++.+
T Consensus       134 -----~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~-~~~~~~~~~~~sp~~~-~~--~v~~~~~~g~v  202 (377)
T TIGR03300       134 -----SSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSR-VTPALTLRGSASPVIA-DG--GVLVGFAGGKL  202 (377)
T ss_pred             -----CceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEcc-CCCceeecCCCCCEEE-CC--EEEEECCCCEE
Confidence                 111111 111  356788888899999999999999888763 21111     111121 23  57778888999


Q ss_pred             EEEECCCCCceeEEEecCCCC---e---EEEEEec--CCCEEEEEeCCCcEEEEEcC
Q 004969          619 KLWDLRQKPIQPCYTASSSKG---N---VMVCFSP--DDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       619 rIWDlrs~~~~~~~~~~~~~~---~---vsl~fSp--dg~~Lasgs~Dg~I~VWDl~  667 (721)
                      ..+|.++++..-........+   .   ..+.-+|  .+..+++++.+|.++.||..
T Consensus       203 ~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~  259 (377)
T TIGR03300       203 VALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLR  259 (377)
T ss_pred             EEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECC
Confidence            999998885432222111000   0   0000011  34566667777888888775

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.71  E-value=0.00034  Score=72.64  Aligned_cols=205  Identities=16%  Similarity=0.201  Sum_probs=129.2

Q ss_pred             eEEEEEeCC-CCCEEEEEECCCeEEEEECCCCe-------------------------------------EEE----Eee
Q 004969          456 PRQFEYHPS-ISCLMVFGTLDGEIVVVNHENEN-------------------------------------IVS----YIP  493 (721)
Q Consensus       456 V~~lafsP~-dg~~LasGs~DG~I~IWdl~tg~-------------------------------------~i~----~l~  493 (721)
                      |..+.|... .-..++..+.|.+|++|.+....                                     .+.    .+.
T Consensus        88 in~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvy  167 (460)
T COG5170          88 INAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVY  167 (460)
T ss_pred             hhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceec
Confidence            666777652 33567777899999999864320                                     011    011


Q ss_pred             cCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEe-ccCCCeEEEEEecCC-CEEEEEeCC
Q 004969          494 SFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTF-DEFDQLTSVHVNSMD-ELFLASGYS  571 (721)
Q Consensus       494 ~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~-~~~~~V~sv~~sp~~-~~lls~g~D  571 (721)
                      ...|.-.|.++.|+ .+...++++ .|=.|.+|+++........+.-.+  ..+ .-..-|++..|||.. ..+..+++.
T Consensus       168 aNaH~yhiNSiS~N-sD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP--~nmeeLteVItSaeFhp~~cn~fmYSsSk  243 (460)
T COG5170         168 ANAHPYHINSISFN-SDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKP--HNMEELTEVITSAEFHPEMCNVFMYSSSK  243 (460)
T ss_pred             cccceeEeeeeeec-Cchheeeec-cceeeeeccccccCCceEEEeccC--ccHHHHHHHHhhcccCHhHcceEEEecCC
Confidence            13677788899997 566666664 567899999886443221111000  000 001237888898875 455566778


Q ss_pred             CcEEEEECCCCcE------EEEE---------ccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecC
Q 004969          572 KNIALYDINSGRR------LQVF---------ADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASS  636 (721)
Q Consensus       572 g~IrlWDl~s~~~------v~~l---------~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~  636 (721)
                      |.|++-|++....      +...         -..-...|..+.|++.| +++++-. --+|+|||++..+ .++.+.+-
T Consensus       244 G~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng-ryIlsRd-yltvkiwDvnm~k-~pikTi~~  320 (460)
T COG5170         244 GEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG-RYILSRD-YLTVKIWDVNMAK-NPIKTIPM  320 (460)
T ss_pred             CcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCC-cEEEEec-cceEEEEeccccc-CCceeech
Confidence            9999999994321      1110         01134568889999999 6776554 4689999998753 34544432


Q ss_pred             CC------------Ce----EEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          637 SK------------GN----VMVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       637 ~~------------~~----vsl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                      |.            ..    ..+.||.|...+++|+..+..-+|...
T Consensus       321 h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         321 HCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             HHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence            21            11    258899999999999988888777643

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.66  E-value=0.0034  Score=75.55  Aligned_cols=203  Identities=13%  Similarity=0.108  Sum_probs=128.7

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcC----C
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIR----H  530 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~----~  530 (721)
                      .|.++.|.. ++.-++.+..+|.|.+-|.++......-   .-.+.|.+++|+ ++..+++-.+.++++.+.+-.    .
T Consensus        70 ~i~s~~fl~-d~~~i~v~~~~G~iilvd~et~~~eivg---~vd~GI~aaswS-~Dee~l~liT~~~tll~mT~~f~~i~  144 (1265)
T KOG1920|consen   70 EIVSVQFLA-DTNSICVITALGDIILVDPETLELEIVG---NVDNGISAASWS-PDEELLALITGRQTLLFMTKDFEPIA  144 (1265)
T ss_pred             ceEEEEEec-ccceEEEEecCCcEEEEcccccceeeee---eccCceEEEeec-CCCcEEEEEeCCcEEEEEeccccchh
Confidence            588999999 8888999999999999998876543221   224789999999 788999988888888775442    1


Q ss_pred             CCCc----------ccccccCcceeEec----------------------cCCCeEEEEEecCCCEEEEEe----CC-Cc
Q 004969          531 MPPS----------IRGMHYGAGTVTFD----------------------EFDQLTSVHVNSMDELFLASG----YS-KN  573 (721)
Q Consensus       531 ~~~~----------~~~~~~~~~~~~~~----------------------~~~~V~sv~~sp~~~~lls~g----~D-g~  573 (721)
                      .++.          +..-.+ .....|.                      ..+.=++++|--+|.++++.+    .+ ..
T Consensus       145 E~~L~~d~~~~sk~v~VGwG-rkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk  223 (1265)
T KOG1920|consen  145 EKPLDADDERKSKFVNVGWG-RKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK  223 (1265)
T ss_pred             ccccccccccccccceeccc-ccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence            1111          000000 0000111                      111224589977777888754    24 78


Q ss_pred             EEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE---ECCCcEEEEECCCCCceeEE--EecCCCCeE-EEEEec
Q 004969          574 IALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS---SFDQDVKLWDLRQKPIQPCY--TASSSKGNV-MVCFSP  647 (721)
Q Consensus       574 IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg---s~DgtIrIWDlrs~~~~~~~--~~~~~~~~v-sl~fSp  647 (721)
                      |++||.. |..-.+-.. ..+.-.+++|-|.| .++++-   +.|+.|.+|....- ....+  ..+.....+ .++|+.
T Consensus       224 irV~drE-g~Lns~se~-~~~l~~~LsWkPsg-s~iA~iq~~~sd~~IvffErNGL-~hg~f~l~~p~de~~ve~L~Wns  299 (1265)
T KOG1920|consen  224 IRVYDRE-GALNSTSEP-VEGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFFERNGL-RHGEFVLPFPLDEKEVEELAWNS  299 (1265)
T ss_pred             EEEeccc-chhhcccCc-ccccccceeecCCC-CeEeeeeecCCCCcEEEEecCCc-cccccccCCcccccchheeeecC
Confidence            9999987 443222211 33344579999988 677764   34667989885432 11112  223333424 899999


Q ss_pred             CCCEEEE---EeCCCcEEEEEcC
Q 004969          648 DDHYLLG---KGSGTSMFVQSLR  667 (721)
Q Consensus       648 dg~~Las---gs~Dg~I~VWDl~  667 (721)
                      ++..|++   ......|++|-+.
T Consensus       300 ~sdiLAv~~~~~e~~~v~lwt~~  322 (1265)
T KOG1920|consen  300 NSDILAVVTSNLENSLVQLWTTG  322 (1265)
T ss_pred             CCCceeeeecccccceEEEEEec
Confidence            9999997   4444459999865

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.64  E-value=0.0069  Score=61.77  Aligned_cols=179  Identities=10%  Similarity=0.045  Sum_probs=108.1

Q ss_pred             CCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCe
Q 004969          474 LDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQL  553 (721)
Q Consensus       474 ~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V  553 (721)
                      .+|+|..||..+|+.+.......-.....+...  .++..+++++.++.+..||..+++....          +.....+
T Consensus         1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~l~~~d~~tG~~~W~----------~~~~~~~   68 (238)
T PF13360_consen    1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAV--PDGGRVYVASGDGNLYALDAKTGKVLWR----------FDLPGPI   68 (238)
T ss_dssp             -TSEEEEEETTTTEEEEEEECSSSCSSEEETEE--EETTEEEEEETTSEEEEEETTTSEEEEE----------EECSSCG
T ss_pred             CCCEEEEEECCCCCEEEEEECCCCCCCccceEE--EeCCEEEEEcCCCEEEEEECCCCCEEEE----------eeccccc
Confidence            378999999999999988865221222332222  2567788889999999999988765221          1111111


Q ss_pred             EEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEE-cccc--CCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCcee
Q 004969          554 TSVHVNSMDELFLASGYSKNIALYDINSGRRLQVF-ADMH--KEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQP  630 (721)
Q Consensus       554 ~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l-~~~h--~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~  630 (721)
                      .... ...++.++++..++.++.+|..+|+.+... ....  ............+ ..++.+..++.|..+|.++++..-
T Consensus        69 ~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~~~d~~tG~~~w  146 (238)
T PF13360_consen   69 SGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDG-DRLYVGTSSGKLVALDPKTGKLLW  146 (238)
T ss_dssp             GSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEET-TEEEEEETCSEEEEEETTTTEEEE
T ss_pred             ccee-eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEec-CEEEEEeccCcEEEEecCCCcEEE
Confidence            1111 135677777788889999999999999984 3210  0111222222235 578888889999999999996644


Q ss_pred             EEEecCCCCe---------E-EEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004969          631 CYTASSSKGN---------V-MVCFSPDDHYLLGKGSGTSMFVQSLRG  668 (721)
Q Consensus       631 ~~~~~~~~~~---------v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g  668 (721)
                      ..........         . .+.+. ++ .++.++.++.+.-+|+..
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~t  192 (238)
T PF13360_consen  147 KYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLAT  192 (238)
T ss_dssp             EEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTT
T ss_pred             EeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEEECCC
Confidence            4444221111         1 22222 34 677777777543338873

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.64  E-value=1.2e-05  Score=64.92  Aligned_cols=59  Identities=31%  Similarity=0.497  Sum_probs=53.0

Q ss_pred             ceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969          147 KRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       147 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (721)
                      ++|.+|.|+ .|+|+.++.+.|..||+|+.|.|.+|+|..+  .-.++..||+|++|.++.|
T Consensus         1 p~L~~L~l~-~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i--~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLS-NNKLTEIPPDSFSNLPNLETLDLSNNNLTSI--PPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEET-SSTESEECTTTTTTGTTESEEEETSSSESEE--ETTTTTTSTTESEEEETSS
T ss_pred             CcCcEEECC-CCCCCccCHHHHcCCCCCCEeEccCCccCcc--CHHHHcCCCCCCEEeCcCC
Confidence            478999999 6799999999999999999999999999877  3357999999999998875

...

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.63  E-value=0.0013  Score=75.91  Aligned_cols=82  Identities=17%  Similarity=0.233  Sum_probs=68.5

Q ss_pred             CCCCCCCCCccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeE
Q 004969          444 GNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSL  523 (721)
Q Consensus       444 gh~~~~~~~~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtV  523 (721)
                      |.+..+..+.+++++++||| ..-.++.|-.-|.+.+|...+.+.- ++.. .|..+|..+.|+ ++|+.++|+..-|.|
T Consensus        50 GEPqr~Vt~P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~~e~h-tv~~-th~a~i~~l~wS-~~G~~l~t~d~~g~v  125 (1416)
T KOG3617|consen   50 GEPQRDVTYPVHATSLCWHP-EEFVLAQGWEMGVSDVQKTNTTETH-TVVE-THPAPIQGLDWS-HDGTVLMTLDNPGSV  125 (1416)
T ss_pred             CCCCcccccceehhhhccCh-HHHHHhhccccceeEEEecCCceee-eecc-CCCCCceeEEec-CCCCeEEEcCCCcee
Confidence            45555556777899999999 7788999999999999998765443 3333 789999999998 799999999999999


Q ss_pred             EEEEcC
Q 004969          524 KLYDIR  529 (721)
Q Consensus       524 rIWDi~  529 (721)
                      .+|...
T Consensus       126 ~lwr~d  131 (1416)
T KOG3617|consen  126 HLWRYD  131 (1416)
T ss_pred             EEEEee
Confidence            999876

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.61  E-value=0.0022  Score=74.13  Aligned_cols=144  Identities=11%  Similarity=0.160  Sum_probs=103.4

Q ss_pred             CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeC----CCCEEEEEeCCCeEEEEEcCCCCCccccccc
Q 004969          465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKK----YPSKLIAGSDNGSLKLYDIRHMPPSIRGMHY  540 (721)
Q Consensus       465 dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~----d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~  540 (721)
                      +|.++++++.||+|.|-.+-+++...++.   -..++.+|+++|.    ....+++||.-| +.++.-+--..       
T Consensus        82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~d---f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn-------  150 (846)
T KOG2066|consen   82 EGEYVASCSDDGKVVIGSLFTDDEITQYD---FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN-------  150 (846)
T ss_pred             CCceEEEecCCCcEEEeeccCCccceeEe---cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC-------
Confidence            78999999999999999998888777664   3478999999853    356899999998 66654332111       


Q ss_pred             CcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCC-----CeEEEEEcCCCCcEEEEEECC
Q 004969          541 GAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKE-----HINVVKFSNHSPSIFATSSFD  615 (721)
Q Consensus       541 ~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~-----~V~sI~fsPdg~~lLaSgs~D  615 (721)
                      ...++.-...++|.++.|  .|+.++-+.++| |++||..+++.+..+...+..     .-..+.|.++.  .++.|= .
T Consensus       151 k~~v~l~~~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~--~LVIGW-~  224 (846)
T KOG2066|consen  151 KDSVVLSEGEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED--RLVIGW-G  224 (846)
T ss_pred             ccceeeecCccceEEEEe--cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC--eEEEec-C
Confidence            112233445678999999  677777777666 899999999988877753321     23457888765  555554 4


Q ss_pred             CcEEEEECCC
Q 004969          616 QDVKLWDLRQ  625 (721)
Q Consensus       616 gtIrIWDlrs  625 (721)
                      .+|+|..++.
T Consensus       225 d~v~i~~I~~  234 (846)
T KOG2066|consen  225 DSVKICSIKK  234 (846)
T ss_pred             CeEEEEEEec
Confidence            4688888873

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.47  E-value=0.0013  Score=76.76  Aligned_cols=174  Identities=19%  Similarity=0.179  Sum_probs=120.6

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEc
Q 004969          510 YPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFA  589 (721)
Q Consensus       510 d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~  589 (721)
                      ++..++.|+....+..+|+++.+........         ...|.-+.  .++..+.+|...|+|.+-|.++.+.++++.
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~---------a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~  214 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVS---------ASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFD  214 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeecc---------CCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeee
Confidence            4567788887778888899886542111111         11233333  356778888889999999999999999999


Q ss_pred             cccCCCeEEEEEcCCCCcEEEEEEC---------CCcEEEEECCCCCceeEEEecCCCCeEEEEEecC-CCEEEEEeCCC
Q 004969          590 DMHKEHINVVKFSNHSPSIFATSSF---------DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPD-DHYLLGKGSGT  659 (721)
Q Consensus       590 ~~h~~~V~sI~fsPdg~~lLaSgs~---------DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpd-g~~Lasgs~Dg  659 (721)
                      . |.+.|..+..  .| ++++++|.         |..|+|||+|..+.  +..+.-+.++.-+.|+|. ...+++.+..|
T Consensus       215 a-Hs~siSDfDv--~G-NlLitCG~S~R~~~l~~D~FvkVYDLRmmra--l~PI~~~~~P~flrf~Psl~t~~~V~S~sG  288 (1118)
T KOG1275|consen  215 A-HSGSISDFDV--QG-NLLITCGYSMRRYNLAMDPFVKVYDLRMMRA--LSPIQFPYGPQFLRFHPSLTTRLAVTSQSG  288 (1118)
T ss_pred             c-cccceeeeec--cC-CeEEEeecccccccccccchhhhhhhhhhhc--cCCcccccCchhhhhcccccceEEEEeccc
Confidence            6 9999987766  46 78888875         66799999998643  333333444445778884 35667778889


Q ss_pred             cEEEEEcC--CCc------ccccccCeEEEEECCCCCcccccccEEEEecCCCccc
Q 004969          660 SMFVQSLR--GDP------FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKEC  707 (721)
Q Consensus       660 ~I~VWDl~--g~~------l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~~ke~  707 (721)
                      ...+-|..  +.|      +.+-...+....+++.+       ..+|.|......+
T Consensus       289 q~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~-------~alafgd~~g~v~  337 (1118)
T KOG1275|consen  289 QFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNG-------DALAFGDHEGHVN  337 (1118)
T ss_pred             ceeeccccccCCCccceeEEccCCCcceeEEecCCC-------ceEEEecccCcEe
Confidence            88888832  222      11223348888999999       9999998884433

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.38  E-value=0.0045  Score=69.87  Aligned_cols=111  Identities=8%  Similarity=0.056  Sum_probs=77.2

Q ss_pred             eEEEEEecC-CCEEEEEe----CCCc----EEEEECCCCcE--EEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEE
Q 004969          553 LTSVHVNSM-DELFLASG----YSKN----IALYDINSGRR--LQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLW  621 (721)
Q Consensus       553 V~sv~~sp~-~~~lls~g----~Dg~----IrlWDl~s~~~--v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIW  621 (721)
                      ..++.|+.. +..+.+..    .+|.    ..+|++..++.  +....-..+..|.+.+++|+. ..++.|+.||+|.+|
T Consensus       208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E-~kLvlGC~DgSiiLy  286 (545)
T PF11768_consen  208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSE-DKLVLGCEDGSIILY  286 (545)
T ss_pred             cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCccc-ceEEEEecCCeEEEE
Confidence            355666553 33344432    2332    45677665432  222222378899999999998 799999999999999


Q ss_pred             ECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          622 DLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       622 Dlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                      |...+..  ... ...-.+..++|+|+|.++++|+..|.+.+||+.
T Consensus       287 D~~~~~t--~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  287 DTTRGVT--LLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             EcCCCee--eee-eecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence            9987632  221 233345589999999999999999999999976

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.38  E-value=0.0013  Score=70.78  Aligned_cols=161  Identities=9%  Similarity=0.111  Sum_probs=100.4

Q ss_pred             EEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEE
Q 004969          478 IVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVH  557 (721)
Q Consensus       478 I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~  557 (721)
                      |++.+..+-+....++  +|...|.+++|+|....++..++.+.+|+|.|+++...          ...+....++++++
T Consensus       175 v~~l~~~~fkssq~lp--~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~----------vssy~a~~~~wSC~  242 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILP--GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV----------VSSYIAYNQIWSCC  242 (463)
T ss_pred             eEEeccCCcchhhccc--ccchhhhhhccCccccceeeeeccCceEEEEeccccee----------eeheeccCCceeee
Confidence            6666666555555444  77889999999977777999999999999999998432          34455557899999


Q ss_pred             EecCCCEEEEEe-CCCcEEEEECCCCcE-EEEEcc-ccCCCeEEEEE------cCCCCcEEEEEECCCcEEEEECCCC--
Q 004969          558 VNSMDELFLASG-YSKNIALYDINSGRR-LQVFAD-MHKEHINVVKF------SNHSPSIFATSSFDQDVKLWDLRQK--  626 (721)
Q Consensus       558 ~sp~~~~lls~g-~Dg~IrlWDl~s~~~-v~~l~~-~h~~~V~sI~f------sPdg~~lLaSgs~DgtIrIWDlrs~--  626 (721)
                      |.-+...++.+| ..|.|.+||++..+. +..+.+ ....+|..++.      .+.| .+++..+.+  ...|.+...  
T Consensus       243 wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~g-glLv~~lt~--l~f~ei~~s~~  319 (463)
T KOG1645|consen  243 WDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSG-GLLVFALTV--LQFYEIVFSAE  319 (463)
T ss_pred             eccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCcccccccc-ceEEeeehh--hhhhhhhcccc
Confidence            988887776666 589999999996542 223321 12234444333      2233 244444433  456666432  


Q ss_pred             CceeEEEecCCCCeEEEEEecCCCEEE
Q 004969          627 PIQPCYTASSSKGNVMVCFSPDDHYLL  653 (721)
Q Consensus       627 ~~~~~~~~~~~~~~vsl~fSpdg~~La  653 (721)
                      ...++..+......+++.+++-.+.++
T Consensus       320 ~~p~vlele~pG~cismqy~~~snh~l  346 (463)
T KOG1645|consen  320 CLPCVLELEPPGICISMQYHGVSNHLL  346 (463)
T ss_pred             CCCcccccCCCcceeeeeecCccceEE
Confidence            222233333333334666666444444

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.37  E-value=0.013  Score=65.28  Aligned_cols=181  Identities=10%  Similarity=0.043  Sum_probs=111.0

Q ss_pred             CEEEEEECCCeEEEEECCCCeEEEEeecCCCC--CC---eEEEEEee-CCCCEEEEEeCCCeEEEEEcCCCCCccccccc
Q 004969          467 CLMVFGTLDGEIVVVNHENENIVSYIPSFGAM--NS---VLGLCWLK-KYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHY  540 (721)
Q Consensus       467 ~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~--~~---V~sl~fsp-~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~  540 (721)
                      ..++.++.+|.+..+|..+|+.+...+.....  ..   ...+.-+| -.++.++.++.+|.+..+|..+++.......+
T Consensus       206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~  285 (394)
T PRK11138        206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG  285 (394)
T ss_pred             CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC
Confidence            45777888999999999999876554321100  00   00111111 12456777888999999999987653321110


Q ss_pred             CcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEE
Q 004969          541 GAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKL  620 (721)
Q Consensus       541 ~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrI  620 (721)
                                 ....+.  ..++.+++++.+|.+..+|..+|+.+............+....  + ..++.++.||.+..
T Consensus       286 -----------~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~-g~l~v~~~~G~l~~  349 (394)
T PRK11138        286 -----------SVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--N-GYLVVGDSEGYLHW  349 (394)
T ss_pred             -----------CccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--C-CEEEEEeCCCEEEE
Confidence                       011122  2567888888999999999999988776542111112222222  3 36788899999999


Q ss_pred             EECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEc
Q 004969          621 WDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSL  666 (721)
Q Consensus       621 WDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl  666 (721)
                      .|..+++..-...+.+ .... +..+  .+..|+.++.||.++.++.
T Consensus       350 ld~~tG~~~~~~~~~~-~~~~s~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        350 INREDGRFVAQQKVDS-SGFLSEPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             EECCCCCEEEEEEcCC-CcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence            9999986544443322 1222 2222  2457888899999988764

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.37  E-value=0.01  Score=68.45  Aligned_cols=199  Identities=17%  Similarity=0.270  Sum_probs=123.6

Q ss_pred             CeEEEEEeCC-----------CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCC--C-CEEEEEeCC
Q 004969          455 RPRQFEYHPS-----------ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKY--P-SKLIAGSDN  520 (721)
Q Consensus       455 ~V~~lafsP~-----------dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d--~-~~LaSgs~D  520 (721)
                      .|+.+.|.|.           ..-+||++...|.|.+||...+..+..+.  .|.++|..++|.+..  . .+|++-...
T Consensus        57 ~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~--~~~~~~qdl~W~~~rd~Srd~LlaIh~s  134 (1062)
T KOG1912|consen   57 AVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLS--HSNDSVQDLCWVPARDDSRDVLLAIHGS  134 (1062)
T ss_pred             ceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhc--CCCcchhheeeeeccCcchheeEEecCC
Confidence            5888888872           22467888889999999999888877776  678899999997532  2 567777778


Q ss_pred             CeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCC-------CcEEEEEcccc
Q 004969          521 GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD-ELFLASGYSKNIALYDINS-------GRRLQVFADMH  592 (721)
Q Consensus       521 GtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~-~~lls~g~Dg~IrlWDl~s-------~~~v~~l~~~h  592 (721)
                      .++-+|+..+|+...+.-..+.         ...++.+.|-+ .++...|..|.+.+-+.-.       |+..+.-.. |
T Consensus       135 s~lvLwntdtG~k~Wk~~ys~~---------iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd-~  204 (1062)
T KOG1912|consen  135 STLVLWNTDTGEKFWKYDYSHE---------ILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSD-H  204 (1062)
T ss_pred             cEEEEEEccCCceeeccccCCc---------ceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecC-c
Confidence            8999999999876433322222         23445555533 3344444444444443321       111111111 1


Q ss_pred             CC----------------C---------eEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEec
Q 004969          593 KE----------------H---------INVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSP  647 (721)
Q Consensus       593 ~~----------------~---------V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSp  647 (721)
                      ..                .         ....+|+|.-.++++ ....+.+.++|+.-..+..+..++..... -+.|-|
T Consensus       205 Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lf-i~~prellv~dle~~~~l~vvpier~~ak-fv~vlP  282 (1062)
T KOG1912|consen  205 SDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILF-ITFPRELLVFDLEYECCLAVVPIERGGAK-FVDVLP  282 (1062)
T ss_pred             cchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEE-EEeccceEEEcchhhceeEEEEeccCCcc-eeEecc
Confidence            11                0         113567887633333 44567799999988766555444432222 345555


Q ss_pred             --CCCEEEEEeCCCcEEEEEcC
Q 004969          648 --DDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       648 --dg~~Lasgs~Dg~I~VWDl~  667 (721)
                        ....|+++..||.+.+|-.+
T Consensus       283 ~~~rd~LfclH~nG~ltirvrk  304 (1062)
T KOG1912|consen  283 DPRRDALFCLHSNGRLTIRVRK  304 (1062)
T ss_pred             CCCcceEEEEecCCeEEEEEee
Confidence              55689999999999999755

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.27  E-value=3.8e-05  Score=85.93  Aligned_cols=80  Identities=25%  Similarity=0.390  Sum_probs=68.0

Q ss_pred             ceEeecccccccccc--cccccceeeEEecccccccccccccccccccccchhccccccchhhhHH-HHHhhcCCcchhh
Q 004969          127 CEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTT-IAALSKLPSLAEL  203 (721)
Q Consensus       127 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  203 (721)
                      =++|+|++|+|..|-  -+-.+.||++|||. -|+|++++|+-|-||.||..|.+-.|+++=.-++ .+|..-||+|+.|
T Consensus       319 L~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs-~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL  397 (873)
T KOG4194|consen  319 LKELDLSSNRITRLDEGSFRVLSQLEELNLS-HNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL  397 (873)
T ss_pred             ceeEeccccccccCChhHHHHHHHhhhhccc-ccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence            367999999999885  34478999999999 8999999999999999999999999999843344 4556679999999


Q ss_pred             ccce
Q 004969          204 RFQN  207 (721)
Q Consensus       204 ~~~~  207 (721)
                      ||+.
T Consensus       398 ~l~g  401 (873)
T KOG4194|consen  398 RLTG  401 (873)
T ss_pred             eecC
Confidence            9873

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.19  E-value=6.5e-05  Score=84.40  Aligned_cols=163  Identities=15%  Similarity=0.252  Sum_probs=108.3

Q ss_pred             CccCeEEEEEeCCCCCEEEEEE----CCCeEEEEECCCC--eEEEEeecC-CCCCCeEEEEEeeCCCCEEEEEeCCCeEE
Q 004969          452 RSFRPRQFEYHPSISCLMVFGT----LDGEIVVVNHENE--NIVSYIPSF-GAMNSVLGLCWLKKYPSKLIAGSDNGSLK  524 (721)
Q Consensus       452 ~~~~V~~lafsP~dg~~LasGs----~DG~I~IWdl~tg--~~i~~l~~~-~H~~~V~sl~fsp~d~~~LaSgs~DGtVr  524 (721)
                      +....++++|++-|.+.||+|-    .|..+.|||+.++  .+....... +-.....+++|. .+..++++|.....++
T Consensus       101 ~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwl-rd~klvlaGm~sr~~~  179 (783)
T KOG1008|consen  101 YARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWL-RDTKLVLAGMTSRSVH  179 (783)
T ss_pred             ccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccc-cCcchhhcccccchhh
Confidence            3346889999998888888885    3678999999876  222221111 233456689997 7788889999899999


Q ss_pred             EEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEE-CCC-CcEEEEEcc---ccCCCeEEE
Q 004969          525 LYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYD-INS-GRRLQVFAD---MHKEHINVV  599 (721)
Q Consensus       525 IWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWD-l~s-~~~v~~l~~---~h~~~V~sI  599 (721)
                      ++|++.....          ........+..+.+.|-....++...||.|-+|| .+. ..+++.+..   .....+..+
T Consensus       180 ifdlRqs~~~----------~~svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~  249 (783)
T KOG1008|consen  180 IFDLRQSLDS----------VSSVNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFAL  249 (783)
T ss_pred             hhhhhhhhhh----------hhhhhhhhcccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeE
Confidence            9999852221          1111223456677777444444445599999999 443 223333321   122358999


Q ss_pred             EEcCCCCcEEEEEECC-CcEEEEECCC
Q 004969          600 KFSNHSPSIFATSSFD-QDVKLWDLRQ  625 (721)
Q Consensus       600 ~fsPdg~~lLaSgs~D-gtIrIWDlrs  625 (721)
                      +|.|..+.++++...| ++|+++|+..
T Consensus       250 aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  250 AYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             EeccCCcchhhhhccCcceEEEecccc
Confidence            9999876677777765 6899999874

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.10  E-value=0.044  Score=66.47  Aligned_cols=181  Identities=12%  Similarity=0.178  Sum_probs=117.0

Q ss_pred             CCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 004969          499 NSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYD  578 (721)
Q Consensus       499 ~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWD  578 (721)
                      +.|.++.|. .+++.++.+..+|.|.+-|.++.....          .-.....|.+++|+|++..++..+..+++.+-+
T Consensus        69 ~~i~s~~fl-~d~~~i~v~~~~G~iilvd~et~~~ei----------vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT  137 (1265)
T KOG1920|consen   69 DEIVSVQFL-ADTNSICVITALGDIILVDPETLELEI----------VGNVDNGISAASWSPDEELLALITGRQTLLFMT  137 (1265)
T ss_pred             cceEEEEEe-cccceEEEEecCCcEEEEcccccceee----------eeeccCceEEEeecCCCcEEEEEeCCcEEEEEe
Confidence            689999998 788888888999999999888754321          111235689999999999998888777765543


Q ss_pred             C----CCCcEE-------------------EEEccc--------------------cCCCeEEEEEcCCCCcEEEEE---
Q 004969          579 I----NSGRRL-------------------QVFADM--------------------HKEHINVVKFSNHSPSIFATS---  612 (721)
Q Consensus       579 l----~s~~~v-------------------~~l~~~--------------------h~~~V~sI~fsPdg~~lLaSg---  612 (721)
                      -    -..+++                   ..|.|.                    -.+.=++|.|--|| .++|+.   
T Consensus       138 ~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg-~~fAVs~~~  216 (1265)
T KOG1920|consen  138 KDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDG-EYFAVSFVE  216 (1265)
T ss_pred             ccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCC-cEEEEEEEe
Confidence            2    111111                   122210                    00112358999999 677773   


Q ss_pred             --ECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEE---eCCCcEEEEEcCCCccccc-------ccCeEE
Q 004969          613 --SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGK---GSGTSMFVQSLRGDPFRDF-------NMSILA  680 (721)
Q Consensus       613 --s~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasg---s~Dg~I~VWDl~g~~l~~~-------~~~V~~  680 (721)
                        ...+.|+|||.. +....... +...-.-+++|-|.|..+++-   +.|+.|.++.-+|-.-..+       ...+..
T Consensus       217 ~~~~~RkirV~drE-g~Lns~se-~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~  294 (1265)
T KOG1920|consen  217 SETGTRKIRVYDRE-GALNSTSE-PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEE  294 (1265)
T ss_pred             ccCCceeEEEeccc-chhhcccC-cccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchhe
Confidence              223789999987 43322111 111111279999999999975   3466799998775321111       234889


Q ss_pred             EEECCCCCcccccccEEEEe
Q 004969          681 AYTRPSSKSEIVKVNLLAST  700 (721)
Q Consensus       681 v~fsP~~~~~~v~v~lLASg  700 (721)
                      ++|+.++       .+||.-
T Consensus       295 L~Wns~s-------diLAv~  307 (1265)
T KOG1920|consen  295 LAWNSNS-------DILAVV  307 (1265)
T ss_pred             eeecCCC-------Cceeee
Confidence            9999999       676663

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.08  E-value=0.0078  Score=69.41  Aligned_cols=151  Identities=14%  Similarity=0.197  Sum_probs=111.0

Q ss_pred             EEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCC-----------CCEEEEEeCCCeEEE
Q 004969          457 RQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKY-----------PSKLIAGSDNGSLKL  525 (721)
Q Consensus       457 ~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d-----------~~~LaSgs~DGtVrI  525 (721)
                      .++.|+|  +.+||-|+.. .|.|-|..+-+.++.+.  .|...|+.|.|.|..           .-.++++...|.|.+
T Consensus        19 ~A~Dw~~--~GLiAygshs-lV~VVDs~s~q~iqsie--~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil   93 (1062)
T KOG1912|consen   19 NAADWSP--SGLIAYGSHS-LVSVVDSRSLQLIQSIE--LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL   93 (1062)
T ss_pred             cccccCc--cceEEEecCc-eEEEEehhhhhhhhccc--cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence            4578888  3667777654 68888988888888887  788999999997521           125777788899999


Q ss_pred             EEcCCCCCcccccccCcceeEec-cCCCeEEEEEecC---C-CEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEE
Q 004969          526 YDIRHMPPSIRGMHYGAGTVTFD-EFDQLTSVHVNSM---D-ELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVK  600 (721)
Q Consensus       526 WDi~~~~~~~~~~~~~~~~~~~~-~~~~V~sv~~sp~---~-~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~  600 (721)
                      ||...+..          ...+. +.+++..++|-+.   . +.+++-....++.+|+..+|+..+.... ......|+.
T Consensus        94 ~d~~~~s~----------~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~y-s~~iLs~f~  162 (1062)
T KOG1912|consen   94 VDFVLASV----------INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDY-SHEILSCFR  162 (1062)
T ss_pred             EEehhhhh----------hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecccc-CCcceeeee
Confidence            99987543          12222 2345677777543   2 4566667788999999999999998875 455677899


Q ss_pred             EcCCCCcEEEEEECCCcEEEEEC
Q 004969          601 FSNHSPSIFATSSFDQDVKLWDL  623 (721)
Q Consensus       601 fsPdg~~lLaSgs~DgtIrIWDl  623 (721)
                      +.|-.++.+..-+..|.+-+-+.
T Consensus       163 ~DPfd~rh~~~l~s~g~vl~~~~  185 (1062)
T KOG1912|consen  163 VDPFDSRHFCVLGSKGFVLSCKD  185 (1062)
T ss_pred             eCCCCcceEEEEccCceEEEEec
Confidence            99988777777777777766654

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.98  E-value=0.012  Score=67.50  Aligned_cols=202  Identities=11%  Similarity=0.150  Sum_probs=118.1

Q ss_pred             EEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccc
Q 004969          460 EYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMH  539 (721)
Q Consensus       460 afsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~  539 (721)
                      +++. .+++++.|+.-|.+++|+-..|.... ++..+..+.+.....+ ....++|.|+..|.|.++-+..+.+.-....
T Consensus        40 c~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~-~~~~~~~~~~~~~~vs-~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~  116 (726)
T KOG3621|consen   40 CVDA-TEEYLAMGSSAGSVYLYNRHTGEMRK-LKNEGATGITCVRSVS-SVEYLVAAGTASGRVSVFQLNKELPRDLDYV  116 (726)
T ss_pred             Eeec-CCceEEEecccceEEEEecCchhhhc-ccccCccceEEEEEec-chhHhhhhhcCCceEEeehhhccCCCcceee
Confidence            3344 66999999999999999988665433 3322333444455555 6677888899999999998887544211111


Q ss_pred             cCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC----cEEEEEccccCCCeEEEEEcCCCCcEEEEEECC
Q 004969          540 YGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSG----RRLQVFADMHKEHINVVKFSNHSPSIFATSSFD  615 (721)
Q Consensus       540 ~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~----~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~D  615 (721)
                      .+.   ...|...|++++|++++-.+++|...|.|.+-.+.+.    ...+.+.. ..+.|-.+.... + .++++... 
T Consensus       117 t~~---d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~-~ds~IVQlD~~q-~-~LLVStl~-  189 (726)
T KOG3621|consen  117 TPC---DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILS-EDSEIVQLDYLQ-S-YLLVSTLT-  189 (726)
T ss_pred             ccc---cccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeec-cCcceEEeeccc-c-eehHhhhh-
Confidence            111   1125677999999999999999999999999888762    11222222 456777776653 3 34444332 


Q ss_pred             CcEEEEECCCCCceeEEEecC-CCCeEEEEEec-----CCCEEEEEeCCCcEEEEE--cCCCccccc
Q 004969          616 QDVKLWDLRQKPIQPCYTASS-SKGNVMVCFSP-----DDHYLLGKGSGTSMFVQS--LRGDPFRDF  674 (721)
Q Consensus       616 gtIrIWDlrs~~~~~~~~~~~-~~~~vsl~fSp-----dg~~Lasgs~Dg~I~VWD--l~g~~l~~~  674 (721)
                      . ..++++..+....+-.-+. .......+|-|     +...|+++--.  .++|.  +.|..+++|
T Consensus       190 r-~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG--~RlWead~~G~V~~Th  253 (726)
T KOG3621|consen  190 R-CILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG--LRLWEADFAGEVIKTH  253 (726)
T ss_pred             h-hheeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCC--CceEEeecceeEEEee
Confidence            2 3355555443222211111 11122344444     33466655443  45554  445555444

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.98  E-value=0.032  Score=65.41  Aligned_cols=175  Identities=11%  Similarity=0.189  Sum_probs=111.0

Q ss_pred             CeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCC-----cE
Q 004969          500 SVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSK-----NI  574 (721)
Q Consensus       500 ~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg-----~I  574 (721)
                      .|+++.   +.+..++.|+.+|.|-+.+-.-  ..........      + +.|..+........+++.+.|+     .+
T Consensus        27 ~isc~~---s~~~~vvigt~~G~V~~Ln~s~--~~~~~fqa~~------~-siv~~L~~~~~~~~L~sv~Ed~~~np~ll   94 (933)
T KOG2114|consen   27 AISCCS---SSTGSVVIGTADGRVVILNSSF--QLIRGFQAYE------Q-SIVQFLYILNKQNFLFSVGEDEQGNPVLL   94 (933)
T ss_pred             ceeEEc---CCCceEEEeeccccEEEecccc--eeeehheecc------h-hhhhHhhcccCceEEEEEeecCCCCceEE
Confidence            455443   5778899999999987776443  2112211111      1 1234444433345777777653     59


Q ss_pred             EEEECCCC------cEE---EEEc--c-ccCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC---CCCCceeEEEecCCCC
Q 004969          575 ALYDINSG------RRL---QVFA--D-MHKEHINVVKFSNHSPSIFATSSFDQDVKLWDL---RQKPIQPCYTASSSKG  639 (721)
Q Consensus       575 rlWDl~s~------~~v---~~l~--~-~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDl---rs~~~~~~~~~~~~~~  639 (721)
                      ++||+..-      .++   +.+.  . ....++.+++.+.+- ..+|.|-.+|.|..+.-   |.......+...+...
T Consensus        95 kiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~p  173 (933)
T KOG2114|consen   95 KIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEP  173 (933)
T ss_pred             EEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhccccceeeeccCCCC
Confidence            99999742      223   2222  1 135678889999886 79999999999988852   2222233445556666


Q ss_pred             eEEEEEecCCCEEEEEeCCCcEEEEEcCCCc-----ccccccCeEEEEECCCC
Q 004969          640 NVMVCFSPDDHYLLGKGSGTSMFVQSLRGDP-----FRDFNMSILAAYTRPSS  687 (721)
Q Consensus       640 ~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~-----l~~~~~~V~~v~fsP~~  687 (721)
                      ++.+++..++.-++-...-..|.+|.+.|++     +..++.++.+..+++..
T Consensus       174 ITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t  226 (933)
T KOG2114|consen  174 ITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGT  226 (933)
T ss_pred             ceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCC
Confidence            6689999988874334446789999998776     23446688999998877

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=96.96  E-value=0.0011  Score=76.92  Aligned_cols=172  Identities=23%  Similarity=0.245  Sum_probs=115.1

Q ss_pred             CCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC--Cc
Q 004969          496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS--KN  573 (721)
Q Consensus       496 ~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D--g~  573 (721)
                      .|...-++++|+ .+.+.|+.|+..|.|+++++.+|...         ...-.|..+|+-+.-+.+|..+++.+.-  .-
T Consensus      1099 d~~~~fTc~afs-~~~~hL~vG~~~Geik~~nv~sG~~e---------~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1099 DETALFTCIAFS-GGTNHLAVGSHAGEIKIFNVSSGSME---------ESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred             ccccceeeEEee-cCCceEEeeeccceEEEEEccCcccc---------ccccccccccccccccCCcceeeeeccccCch
Confidence            677889999998 78899999999999999999997652         1223355677888777888888877643  35


Q ss_pred             EEEEECCC-CcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEE-Ee--cCCCCeEEEEEecCC
Q 004969          574 IALYDINS-GRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCY-TA--SSSKGNVMVCFSPDD  649 (721)
Q Consensus       574 IrlWDl~s-~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~-~~--~~~~~~vsl~fSpdg  649 (721)
                      ..+|++.+ +.+.++|.+     -.++.|+... ..-+.|..-....+||+.++.....+ ..  ..........|+|+.
T Consensus      1169 saLW~~~s~~~~~Hsf~e-----d~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D 1242 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSFDE-----DKAVKFSNSL-QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCD 1242 (1516)
T ss_pred             HHHhccccccCccccccc-----cceeehhhhH-HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCc
Confidence            78999874 566666653     4567888765 34444555566899999987432221 11  111122368899998


Q ss_pred             CEEEEEeCCCcEEEEEcCCC-ccccccc--CeEEEEECCCCC
Q 004969          650 HYLLGKGSGTSMFVQSLRGD-PFRDFNM--SILAAYTRPSSK  688 (721)
Q Consensus       650 ~~Lasgs~Dg~I~VWDl~g~-~l~~~~~--~V~~v~fsP~~~  688 (721)
                      ..++-   ||  -+||++.. .++.|..  .-....|||.+.
T Consensus      1243 ~LIln---dG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~ 1279 (1516)
T KOG1832|consen 1243 TLILN---DG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGN 1279 (1516)
T ss_pred             ceEee---Cc--eeeeeccHHHHhhhhhheecccccccCCCc
Confidence            88873   33  37999832 1222211  223357999983

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.95  E-value=0.17  Score=54.69  Aligned_cols=186  Identities=15%  Similarity=0.192  Sum_probs=108.7

Q ss_pred             CCEEEEEEC----------CCeEEEEECCCC----eEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 004969          466 SCLMVFGTL----------DGEIVVVNHENE----NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM  531 (721)
Q Consensus       466 g~~LasGs~----------DG~I~IWdl~tg----~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~  531 (721)
                      ..++++|+.          .|.|.++++...    ..+..+......++|++++-.  .+ .|+.+. .+.|.+|++...
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~-~lv~~~-g~~l~v~~l~~~  117 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NG-RLVVAV-GNKLYVYDLDNS  117 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TT-EEEEEE-TTEEEEEEEETT
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CC-EEEEee-cCEEEEEEccCc
Confidence            467887764          299999999874    233333223457899999864  44 444443 379999999986


Q ss_pred             CCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC-CcEEEEE-ccccCCCeEEEEEcCCCCcEE
Q 004969          532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINS-GRRLQVF-ADMHKEHINVVKFSNHSPSIF  609 (721)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s-~~~v~~l-~~~h~~~V~sI~fsPdg~~lL  609 (721)
                      +..       .....+.....+.++..  .++.+++|..-+.+.++..+. +..+..+ .......++++.|-+++ ..+
T Consensus       118 ~~l-------~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~-~~~  187 (321)
T PF03178_consen  118 KTL-------LKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDE-DTI  187 (321)
T ss_dssp             SSE-------EEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SS-SEE
T ss_pred             ccc-------hhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCC-cEE
Confidence            611       11222223335666665  467899888777777764432 2222222 22245678999999777 589


Q ss_pred             EEEECCCcEEEEECCC-------C--CceeEEEecCCCCeEEE---EEec--CCC------EEEEEeCCCcEE-EEE
Q 004969          610 ATSSFDQDVKLWDLRQ-------K--PIQPCYTASSSKGNVMV---CFSP--DDH------YLLGKGSGTSMF-VQS  665 (721)
Q Consensus       610 aSgs~DgtIrIWDlrs-------~--~~~~~~~~~~~~~~vsl---~fSp--dg~------~Lasgs~Dg~I~-VWD  665 (721)
                      +.+..+|.+.++....       +  .......+.-+...+++   ++.|  .+.      .++.++.+|.|. +-.
T Consensus       188 i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~p  264 (321)
T PF03178_consen  188 IVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVLIP  264 (321)
T ss_dssp             EEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEEEE
T ss_pred             EEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEEEe
Confidence            9999999999988763       1  22334444444444444   3344  122      477788899887 444

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.95  E-value=0.00019  Score=80.58  Aligned_cols=105  Identities=24%  Similarity=0.336  Sum_probs=85.4

Q ss_pred             HHHHHHHHhcccceEeeccCCchhhHHHHHhhcCCccceEeecccccccc-cccccccceeeEEeccccccccccccccc
Q 004969           90 FALSLMHAIDQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRK-LNMIGEFKRIHTLNLDYSTSLTSFKEDCF  168 (721)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  168 (721)
                      +.+...++-.++++..+.++ .++.+++    -....|+.++||.|.|.+ +|-.+.|..||.|+|. +|.|+.+... .
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~-~n~i~~i~~~-l  114 (414)
T KOG0531|consen   42 LLLQLVPSDLEEIDLIFNLD-GSDEDLV----ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLY-DNKIEKIENL-L  114 (414)
T ss_pred             cccccccchhhhhcchhccc-cchhhhH----HHhHhHHhhccchhhhhhhhcccccccceeeeecc-ccchhhcccc-h
Confidence            56677777777777777766 2334442    456678899999999999 7779999999999999 9999999765 8


Q ss_pred             ccccccchhccccccchhhhHHHHHhhcCCcchhhcc
Q 004969          169 SCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRF  205 (721)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (721)
                      .+|++|..|++++|+|..+    -.|.+|+.|.+|.+
T Consensus       115 ~~~~~L~~L~ls~N~I~~i----~~l~~l~~L~~L~l  147 (414)
T KOG0531|consen  115 SSLVNLQVLDLSFNKITKL----EGLSTLTLLKELNL  147 (414)
T ss_pred             hhhhcchheeccccccccc----cchhhccchhhhee
Confidence            8999999999999999988    66777777888854

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.95  E-value=0.0003  Score=76.69  Aligned_cols=121  Identities=23%  Similarity=0.341  Sum_probs=99.7

Q ss_pred             ecCCccccchHHHHHHHHHhcccceEeeccCC-chhhHHHH-HhhcCCccceEeecccccccccc---cccccceeeEEe
Q 004969           79 RSGTSCMLTGEFALSLMHAIDQKLRVVDLHDS-SFGKDFIR-NLSQRGLMCEVLNLRSSRFRKLN---MIGEFKRIHTLN  153 (721)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~  153 (721)
                      .+=++|.|+|.-++.++-.+- -|.+++|+.| ..++...+ +.+|+   =|.|||++|.+..+.   ..|.|++|..||
T Consensus       202 L~l~~CGls~k~V~~~~~~fP-sl~~L~L~~N~~~~~~~~~~~i~~~---L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  202 LVLNSCGLSWKDVQWILLTFP-SLEVLYLEANEIILIKATSTKILQT---LQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             EEeccCCCCHHHHHHHHHhCC-cHHHhhhhcccccceecchhhhhhH---HhhccccCCcccccccccccccccchhhhh
Confidence            456899999999998887774 4778899887 33333222 33332   367999999999887   678999999999


Q ss_pred             cccccccccccc-cc-----cccccccchhccccccchhhhHHHHHhhcCCcchhhcc
Q 004969          154 LDYSTSLTSFKE-DC-----FSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRF  205 (721)
Q Consensus       154 ~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (721)
                      +. ++.|+++.+ ||     -...|+|++|....|.|. =|..+.-|.+|++|+.|||
T Consensus       278 ls-~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~  333 (505)
T KOG3207|consen  278 LS-STGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRI  333 (505)
T ss_pred             cc-ccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhc
Confidence            99 999999987 77     677999999999999998 7999999999999999974

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.94  E-value=0.086  Score=57.01  Aligned_cols=182  Identities=12%  Similarity=0.129  Sum_probs=108.0

Q ss_pred             CeEEEEECCCCeEEEEeecCCCCCCeEEEEEee--C----CCCEEEEEeC----------CCeEEEEEcCCCCCcccccc
Q 004969          476 GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLK--K----YPSKLIAGSD----------NGSLKLYDIRHMPPSIRGMH  539 (721)
Q Consensus       476 G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp--~----d~~~LaSgs~----------DGtVrIWDi~~~~~~~~~~~  539 (721)
                      +.|++.|..+.+.+..+....+ ..+++++...  .    ...+++.|..          .|.|.++++.........  
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~-E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~--   78 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPN-EHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFK--   78 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETT-EEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----E--
T ss_pred             cEEEEEeCCCCeEEEEEECCCC-ceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceE--
Confidence            4689999988888777765432 3455444332  1    1456776653          289999999884110000  


Q ss_pred             cCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc-EEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcE
Q 004969          540 YGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR-RLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDV  618 (721)
Q Consensus       540 ~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~-~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtI  618 (721)
                       -.........++|++++--  ++.++++. ++.|.+|++...+ ....-.......+.++...  + ++++.|.....+
T Consensus        79 -l~~i~~~~~~g~V~ai~~~--~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~-~~I~vgD~~~sv  151 (321)
T PF03178_consen   79 -LKLIHSTEVKGPVTAICSF--NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--K-NYILVGDAMKSV  151 (321)
T ss_dssp             -EEEEEEEEESS-EEEEEEE--TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--T-TEEEEEESSSSE
T ss_pred             -EEEEEEEeecCcceEhhhh--CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--c-cEEEEEEcccCE
Confidence             0112233446778888864  55544444 5889999999877 4433321133456666554  4 588889888888


Q ss_pred             EEEECCC--CCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          619 KLWDLRQ--KPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       619 rIWDlrs--~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                      .++..+.  .+...+..-......+++.|-++++.++++..+|.+.++...
T Consensus       152 ~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  152 SLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             EEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             EEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            8774443  323333322222223378888677799999999999999876

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.91  E-value=0.16  Score=57.49  Aligned_cols=195  Identities=12%  Similarity=0.217  Sum_probs=101.9

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEE-EcCCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLY-DIRHMPP  533 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIW-Di~~~~~  533 (721)
                      .|+.+.++| +++++++ +.||.-.|+.....+....       +.-....|. . .+.+|+-...++|.|+ +++....
T Consensus        34 ~p~~ls~np-ngr~v~V-~g~geY~iyt~~~~r~k~~-------G~g~~~vw~-~-~n~yAv~~~~~~I~I~kn~~~~~~  102 (443)
T PF04053_consen   34 YPQSLSHNP-NGRFVLV-CGDGEYEIYTALAWRNKAF-------GSGLSFVWS-S-RNRYAVLESSSTIKIYKNFKNEVV  102 (443)
T ss_dssp             --SEEEE-T-TSSEEEE-EETTEEEEEETTTTEEEEE-------EE-SEEEE--T-SSEEEEE-TTS-EEEEETTEE-TT
T ss_pred             CCeeEEECC-CCCEEEE-EcCCEEEEEEccCCccccc-------CceeEEEEe-c-CccEEEEECCCeEEEEEcCccccc
Confidence            588999999 8888888 5588888888554444332       234567897 3 5567777778899996 4433110


Q ss_pred             cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969          534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS  613 (721)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs  613 (721)
                               .  .+.....+..+-  . |..++..+. +.|.+||+.+++.++.+..  . +|..|.|+++| .+++-.+
T Consensus       103 ---------k--~i~~~~~~~~If--~-G~LL~~~~~-~~i~~yDw~~~~~i~~i~v--~-~vk~V~Ws~~g-~~val~t  163 (443)
T PF04053_consen  103 ---------K--SIKLPFSVEKIF--G-GNLLGVKSS-DFICFYDWETGKLIRRIDV--S-AVKYVIWSDDG-ELVALVT  163 (443)
T ss_dssp             ----------------SS-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS----E-EEEEE-TTS-SEEEEE-
T ss_pred             ---------e--EEcCCcccceEE--c-CcEEEEECC-CCEEEEEhhHcceeeEEec--C-CCcEEEEECCC-CEEEEEe
Confidence                     0  111111122222  2 666666554 4899999999999999873  2 38999999998 6777776


Q ss_pred             CCCcEEEEECCCC------------CceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCC--cccccccCeE
Q 004969          614 FDQDVKLWDLRQK------------PIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGD--PFRDFNMSIL  679 (721)
Q Consensus       614 ~DgtIrIWDlrs~------------~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~--~l~~~~~~V~  679 (721)
                      .+ .+.|++....            ....+...  ...+.+.+|..+ -++++.. . .++-+ +.|.  .++.+..++.
T Consensus       164 ~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~--~~~IkSg~W~~d-~fiYtT~-~-~lkYl-~~Ge~~~i~~ld~~~y  236 (443)
T PF04053_consen  164 KD-SIYILKYNLEAVAAIPEEGVEDAFELIHEI--SERIKSGCWVED-CFIYTTS-N-HLKYL-VNGETGIIAHLDKPLY  236 (443)
T ss_dssp             S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE---S--SEEEEETT-EEEEE-T-T-EEEEE-ETTEEEEEEE-SS--E
T ss_pred             CC-eEEEEEecchhcccccccCchhceEEEEEe--cceeEEEEEEcC-EEEEEcC-C-eEEEE-EcCCcceEEEcCCceE
Confidence            54 6777765443            22222221  222227888866 4444443 2 66552 3333  2344444555


Q ss_pred             EEEECCC
Q 004969          680 AAYTRPS  686 (721)
Q Consensus       680 ~v~fsP~  686 (721)
                      =+...|.
T Consensus       237 llgy~~~  243 (443)
T PF04053_consen  237 LLGYLPK  243 (443)
T ss_dssp             EEEEETT
T ss_pred             EEEEEcc
Confidence            5555553

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.89  E-value=0.21  Score=56.08  Aligned_cols=174  Identities=11%  Similarity=0.160  Sum_probs=90.4

Q ss_pred             eEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEec-cCCCeEE
Q 004969          477 EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFD-EFDQLTS  555 (721)
Q Consensus       477 ~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~-~~~~V~s  555 (721)
                      .|+||+.. |+.+..+....  +.|.++.|.  +...|+....||+++++|+.+.. ... .  ........ ....+..
T Consensus        62 ~I~iys~s-G~ll~~i~w~~--~~iv~~~wt--~~e~LvvV~~dG~v~vy~~~G~~-~fs-l--~~~i~~~~v~e~~i~~  132 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDS--GRIVGMGWT--DDEELVVVQSDGTVRVYDLFGEF-QFS-L--GEEIEEEKVLECRIFA  132 (410)
T ss_pred             EEEEECCC-CCEeEEEEECC--CCEEEEEEC--CCCeEEEEEcCCEEEEEeCCCce-eec-h--hhhccccCcccccccc
Confidence            59999976 77788777644  789999997  45677788899999999997533 100 0  00000000 0011122


Q ss_pred             EEEecCCCEEEEEeCCCcEEEEECCCCc-EEEEEc---c----c--cCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCC
Q 004969          556 VHVNSMDELFLASGYSKNIALYDINSGR-RLQVFA---D----M--HKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQ  625 (721)
Q Consensus       556 v~~sp~~~~lls~g~Dg~IrlWDl~s~~-~v~~l~---~----~--h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs  625 (721)
                      ..+ ...+.++. ..++.+.+..--... ..+.+.   +    .  +........++.++ ...+....++.+.+-+-..
T Consensus       133 ~~~-~~~GivvL-t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~-~~~i~~~~g~~i~~i~~~~  209 (410)
T PF04841_consen  133 IWF-YKNGIVVL-TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDR-VVEILLANGETIYIIDENS  209 (410)
T ss_pred             ccc-CCCCEEEE-CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCc-ceEEEEecCCEEEEEEccc
Confidence            222 12233333 333444333222111 111111   0    0  00000012234344 3444444555566444332


Q ss_pred             CCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          626 KPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       626 ~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                      ..     .+......+.++.||+|+++|.-..+|.+.|.+..
T Consensus       210 ~~-----~i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssD  246 (410)
T PF04841_consen  210 FK-----QIDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSD  246 (410)
T ss_pred             cc-----cccCCCCeEEEEECCCCCEEEEEECCCCEEEEECc
Confidence            11     12233455689999999999999999999888755

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.87  E-value=0.08  Score=61.40  Aligned_cols=95  Identities=9%  Similarity=0.049  Sum_probs=72.0

Q ss_pred             CCcEEEEECCC-----CcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCc----------eeEEEec
Q 004969          571 SKNIALYDINS-----GRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPI----------QPCYTAS  635 (721)
Q Consensus       571 Dg~IrlWDl~s-----~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~----------~~~~~~~  635 (721)
                      ++.|.+.|.++     .+.+..+.  -......+.++|||.++++++..+.+|.|.|+.+.+.          ..+.+..
T Consensus       295 gn~V~VID~~t~~~~~~~v~~yIP--VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve  372 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSALTRYVP--VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE  372 (635)
T ss_pred             CCEEEEEECCccccCCcceEEEEE--CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence            45688999887     34445454  5667888999999976777777899999999987431          1133444


Q ss_pred             CCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          636 SSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       636 ~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                      ...++.-.+|+++|....+--.|..|-.|++.
T Consensus       373 vGlGPLHTaFDg~G~aytslf~dsqv~kwn~~  404 (635)
T PRK02888        373 LGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIE  404 (635)
T ss_pred             cCCCcceEEECCCCCEEEeEeecceeEEEehH
Confidence            45667778999999888888889999999986

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=96.85  E-value=0.092  Score=58.51  Aligned_cols=185  Identities=11%  Similarity=-0.013  Sum_probs=109.0

Q ss_pred             CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCC--------e-EEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 004969          465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNS--------V-LGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI  535 (721)
Q Consensus       465 dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~--------V-~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~  535 (721)
                      .+..+++++.+|.+.-+|..+|+.+...........        + ..+..   .++.++.++.+|.+.-+|.++++...
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~v~v~~~~g~l~ald~~tG~~~W  144 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV---AGGKVYIGSEKGQVYALNAEDGEVAW  144 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE---ECCEEEEEcCCCEEEEEECCCCCCcc
Confidence            346788888899999999999998877654221110        0 01121   35677888899999999999987644


Q ss_pred             cccccCcceeEeccCCCeEE-EEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCC----CeEEEEEcCCCCcEEE
Q 004969          536 RGMHYGAGTVTFDEFDQLTS-VHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKE----HINVVKFSNHSPSIFA  610 (721)
Q Consensus       536 ~~~~~~~~~~~~~~~~~V~s-v~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~----~V~sI~fsPdg~~lLa  610 (721)
                      .....          ..+.+ -.+  .++.++++..++.+.-+|..+|+.+..+......    ...+.... ++  .++
T Consensus       145 ~~~~~----------~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~--~v~  209 (394)
T PRK11138        145 QTKVA----------GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA-FG--GAI  209 (394)
T ss_pred             cccCC----------CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE-CC--EEE
Confidence            32211          11111 111  2567777888999999999999999888631110    00111111 22  466


Q ss_pred             EEECCCcEEEEECCCCCceeEEEecCCCCe------EEEEEec--CCCEEEEEeCCCcEEEEEcC
Q 004969          611 TSSFDQDVKLWDLRQKPIQPCYTASSSKGN------VMVCFSP--DDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       611 Sgs~DgtIrIWDlrs~~~~~~~~~~~~~~~------vsl~fSp--dg~~Lasgs~Dg~I~VWDl~  667 (721)
                      .++.+|.+..+|..+++..-........+.      ..+.-+|  .+..+++++.+|.++.+|..
T Consensus       210 ~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~  274 (394)
T PRK11138        210 VGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLR  274 (394)
T ss_pred             EEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECC
Confidence            677889999999888754322221111000      0011122  24455566667777766665

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=96.81  E-value=0.55  Score=49.12  Aligned_cols=148  Identities=12%  Similarity=0.107  Sum_probs=88.3

Q ss_pred             EEeCCCCCEEEEEECCCeEEEEECCCC--eEEEEeecCCC-CCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCccc
Q 004969          460 EYHPSISCLMVFGTLDGEIVVVNHENE--NIVSYIPSFGA-MNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIR  536 (721)
Q Consensus       460 afsP~dg~~LasGs~DG~I~IWdl~tg--~~i~~l~~~~H-~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~  536 (721)
                      +.+. +|++||.- .|..|.|=..++.  .++...+.... ...-.-++|+ +++..||.+...|+|+++|+.+...- .
T Consensus         4 ~~~~-~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WS-pD~tlLa~a~S~G~i~vfdl~g~~lf-~   79 (282)
T PF15492_consen    4 ALSS-DGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWS-PDCTLLAYAESTGTIRVFDLMGSELF-V   79 (282)
T ss_pred             eecC-CCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEEC-CCCcEEEEEcCCCeEEEEecccceeE-E
Confidence            3445 77776664 5667777665432  23333332222 2345689998 79999999999999999999874331 1


Q ss_pred             ccccCcceeEeccCCCeEEEEEecC------CCEEEEEeCCCcEEEEECCCC-----cEEEE--EccccCCCeEEEEEcC
Q 004969          537 GMHYGAGTVTFDEFDQLTSVHVNSM------DELFLASGYSKNIALYDINSG-----RRLQV--FADMHKEHINVVKFSN  603 (721)
Q Consensus       537 ~~~~~~~~~~~~~~~~V~sv~~sp~------~~~lls~g~Dg~IrlWDl~s~-----~~v~~--l~~~h~~~V~sI~fsP  603 (721)
                      ......  ....-...|..+.|-..      ...+++...+|.++=|-+..+     +..++  |...+...|.++.++|
T Consensus        80 I~p~~~--~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p  157 (282)
T PF15492_consen   80 IPPAMS--FPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP  157 (282)
T ss_pred             cCcccc--cCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC
Confidence            111110  01112234566655322      236777788888877765322     22333  3333577899999999


Q ss_pred             CCCcEEEEEEC
Q 004969          604 HSPSIFATSSF  614 (721)
Q Consensus       604 dg~~lLaSgs~  614 (721)
                      .. ++|++||.
T Consensus       158 ~h-~LLlVgG~  167 (282)
T PF15492_consen  158 KH-RLLLVGGC  167 (282)
T ss_pred             CC-CEEEEecc
Confidence            98 67666654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.80  E-value=0.00048  Score=70.78  Aligned_cols=81  Identities=21%  Similarity=0.323  Sum_probs=61.1

Q ss_pred             ccceEeecccccccccccccccceeeEEeccccc--ccccccccccccccccchhccccccchhhhHHHHHhhcCCcchh
Q 004969          125 LMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYST--SLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAE  202 (721)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (721)
                      -+-|-|.+++.+.-.+-.++.++.|.+|.|. +|  ++..==+---.+.|+|+.|.+++|+|..+ .|+++|.+|..|..
T Consensus        43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~ls-dn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l-stl~pl~~l~nL~~  120 (260)
T KOG2739|consen   43 VELELLSVINVGLTTLTNFPKLPKLKKLELS-DNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL-STLRPLKELENLKS  120 (260)
T ss_pred             cchhhhhhhccceeecccCCCcchhhhhccc-CCcccccccceehhhhCCceeEEeecCCccccc-cccchhhhhcchhh
Confidence            3344455777778888888999999999998 77  55432222233449999999999999974 89999999999988


Q ss_pred             hccce
Q 004969          203 LRFQN  207 (721)
Q Consensus       203 ~~~~~  207 (721)
                      |..++
T Consensus       121 Ldl~n  125 (260)
T KOG2739|consen  121 LDLFN  125 (260)
T ss_pred             hhccc
Confidence            85433

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.80  E-value=0.082  Score=47.90  Aligned_cols=101  Identities=19%  Similarity=0.211  Sum_probs=68.0

Q ss_pred             eEEEEEeCCC---CCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969          456 PRQFEYHPSI---SCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP  532 (721)
Q Consensus       456 V~~lafsP~d---g~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~  532 (721)
                      |+++++...+   .+-|++|+.|..|+||+-+  ..+..+..   ...|++++-.  .+..++.+..+|+|-+|+-....
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e---~~~v~~L~~~--~~~~F~Y~l~NGTVGvY~~~~Rl   74 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE---TDKVTSLCSL--GGGRFAYALANGTVGVYDRSQRL   74 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec---ccceEEEEEc--CCCEEEEEecCCEEEEEeCccee
Confidence            5666666533   3689999999999999854  56666652   4678888865  45789999999999999875422


Q ss_pred             CcccccccCcceeEeccCCCeEEEEEecCC----CEEEEEeCCCcEE
Q 004969          533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMD----ELFLASGYSKNIA  575 (721)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~----~~lls~g~Dg~Ir  575 (721)
                                  .+...+..+.++++..-+    ..+++|=.+|.|-
T Consensus        75 ------------WRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   75 ------------WRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             ------------eeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence                        222333345666553322    2577766777654

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.79  E-value=0.66  Score=48.64  Aligned_cols=193  Identities=18%  Similarity=0.203  Sum_probs=112.6

Q ss_pred             CCCEEEEEECCCeEEEEECC-CCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccC--
Q 004969          465 ISCLMVFGTLDGEIVVVNHE-NENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYG--  541 (721)
Q Consensus       465 dg~~LasGs~DG~I~IWdl~-tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~--  541 (721)
                      .++.++.|+.+| +.+++.. .........    ...|..+... ++-+.+++-+ ||.+.++++..-..........  
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~----~~~I~ql~vl-~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~   78 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILK----LSSITQLSVL-PELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP   78 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEee----cceEEEEEEe-cccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence            568899999999 9999983 333333332    3349999988 4445555443 4999999998744422110000  


Q ss_pred             ---cceeEeccCCCeEEEE--EecCCCEEEEEeCCCcEEEEECCCC-----cEEEEEccccCCCeEEEEEcCCCCcEEEE
Q 004969          542 ---AGTVTFDEFDQLTSVH--VNSMDELFLASGYSKNIALYDINSG-----RRLQVFADMHKEHINVVKFSNHSPSIFAT  611 (721)
Q Consensus       542 ---~~~~~~~~~~~V~sv~--~sp~~~~lls~g~Dg~IrlWDl~s~-----~~v~~l~~~h~~~V~sI~fsPdg~~lLaS  611 (721)
                         ...........+...+  -...+...++....+.|.+|.....     +..+.+.  -...+.+++|.+   +.++.
T Consensus        79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~--lp~~~~~i~~~~---~~i~v  153 (275)
T PF00780_consen   79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS--LPDPPSSIAFLG---NKICV  153 (275)
T ss_pred             ccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE--cCCCcEEEEEeC---CEEEE
Confidence               0001112222344444  2234455566666678888887653     4556665  568899999984   45777


Q ss_pred             EECCCcEEEEECCCCCceeEEEecCCC----------CeEEEEEecCCCEEEEEeCCCcEEEEEcCCCccc
Q 004969          612 SSFDQDVKLWDLRQKPIQPCYTASSSK----------GNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFR  672 (721)
Q Consensus       612 gs~DgtIrIWDlrs~~~~~~~~~~~~~----------~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~  672 (721)
                      |..++ ..+.|+.++....+.......          .+..+.--+++.+|++-  +..-.+-+..|.+.+
T Consensus       154 ~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~fv~~~G~~~r  221 (275)
T PF00780_consen  154 GTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVFVNKNGEPSR  221 (275)
T ss_pred             EeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEEEEcCCCCcCc
Confidence            76554 778899977655554332211          23333334456777753  444455566666544

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.78  E-value=0.13  Score=57.52  Aligned_cols=203  Identities=9%  Similarity=0.064  Sum_probs=109.9

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCC------CCCCeEEEEEee----CCC---CEEEEEeCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFG------AMNSVLGLCWLK----KYP---SKLIAGSDNG  521 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~------H~~~V~sl~fsp----~d~---~~LaSgs~DG  521 (721)
                      .|++++.|  +-.++|.|..+|.+.|.|++....+..-....      ....|+++.|.-    .++   -.+++|...|
T Consensus        88 ~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G  165 (395)
T PF08596_consen   88 PVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSG  165 (395)
T ss_dssp             SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTS
T ss_pred             cEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCC
Confidence            58889886  56899999999999999998888776643322      345688898862    111   3788899999


Q ss_pred             eEEEEEcCC-CCCcccccccCcceeEeccCCCeEEEE-EecC--------------------CCEEEEEeCCCcEEEEEC
Q 004969          522 SLKLYDIRH-MPPSIRGMHYGAGTVTFDEFDQLTSVH-VNSM--------------------DELFLASGYSKNIALYDI  579 (721)
Q Consensus       522 tVrIWDi~~-~~~~~~~~~~~~~~~~~~~~~~V~sv~-~sp~--------------------~~~lls~g~Dg~IrlWDl  579 (721)
                      .+.+|.+-- ......   .........+.++|..+. ++.+                    -+.+++...+..+|++..
T Consensus       166 ~v~~fkIlp~~~g~f~---v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~  242 (395)
T PF08596_consen  166 NVLTFKILPSSNGRFS---VQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKP  242 (395)
T ss_dssp             EEEEEEEEE-GGG-EE---EEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-T
T ss_pred             CEEEEEEecCCCCceE---EEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeC
Confidence            999998852 111000   000001112334444443 2211                    123555556788999999


Q ss_pred             CCCcEEEEEccccCCCeEEEEEc-----CCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCC--CeE-EEEEecCCCE
Q 004969          580 NSGRRLQVFADMHKEHINVVKFS-----NHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSK--GNV-MVCFSPDDHY  651 (721)
Q Consensus       580 ~s~~~v~~l~~~h~~~V~sI~fs-----Pdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~--~~v-sl~fSpdg~~  651 (721)
                      .+.+..++... .......+.+-     ..+ ..|++-..+|.|++|.+..-+......+....  ... ..+++++|+.
T Consensus       243 ~~~k~~~K~~~-~~~~~~~~~vv~~~~~~~~-~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi  320 (395)
T PF08596_consen  243 PKSKGAHKSFD-DPFLCSSASVVPTISRNGG-YCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDI  320 (395)
T ss_dssp             T---EEEEE-S-S-EEEEEEEEEEEE-EEEE-EEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-E
T ss_pred             CCCcccceeec-cccccceEEEEeecccCCc-eEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCE
Confidence            98877665543 33333444442     234 67888899999999999886544333332111  111 4678999998


Q ss_pred             EEEEeCCCcEEEEE
Q 004969          652 LLGKGSGTSMFVQS  665 (721)
Q Consensus       652 Lasgs~Dg~I~VWD  665 (721)
                      ++-.+ ...+.++.
T Consensus       321 ~~~~g-psE~~l~s  333 (395)
T PF08596_consen  321 FYWTG-PSEIQLFS  333 (395)
T ss_dssp             EEE-S-SSEEEEEE
T ss_pred             EEEeC-cccEEEEE
Confidence            87665 33444443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.77  E-value=0.37  Score=53.62  Aligned_cols=221  Identities=10%  Similarity=0.131  Sum_probs=135.5

Q ss_pred             eEEEEEeCCCC-CEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          456 PRQFEYHPSIS-CLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       456 V~~lafsP~dg-~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      +..+.+.| ++ +..++-.....+.+.+............ +- ..-.+++.++......+....++.|.+.|..+....
T Consensus        33 ~~~v~~~~-~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~-g~-~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~  109 (381)
T COG3391          33 PGGVAVNP-DGTQVYVANSGSNDVSVIDATSNTVTQSLSV-GG-VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVL  109 (381)
T ss_pred             CceeEEcC-ccCEEEEEeecCceeeecccccceeeeeccC-CC-ccccceeeCCCCCeEEEecCCCCeEEEEcCccccee
Confidence            55677788 55 4444433333566655552222221211 11 233466666444446666667789999996664331


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC---CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEE
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY---SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFAT  611 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~---Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaS  611 (721)
                      ..        ...  ......+++++++..+.++..   ++++.+.|..+++.+..... -..+ ..+++.|+|...+++
T Consensus       110 ~~--------~~v--G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~v-G~~P-~~~a~~p~g~~vyv~  177 (381)
T COG3391         110 GS--------IPV--GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPV-GNTP-TGVAVDPDGNKVYVT  177 (381)
T ss_pred             eE--------eee--ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEec-CCCc-ceEEECCCCCeEEEE
Confidence            11        111  113467889899988888765   68899999999998888553 2233 889999999556666


Q ss_pred             EECCCcEEEEECCCCCceeEE----EecCCCCeEEEEEecCCCEEEEEeCC---CcEEEEEcCCCccccccc-----CeE
Q 004969          612 SSFDQDVKLWDLRQKPIQPCY----TASSSKGNVMVCFSPDDHYLLGKGSG---TSMFVQSLRGDPFRDFNM-----SIL  679 (721)
Q Consensus       612 gs~DgtIrIWDlrs~~~~~~~----~~~~~~~~vsl~fSpdg~~Lasgs~D---g~I~VWDl~g~~l~~~~~-----~V~  679 (721)
                      -..++.|.+.|........ .    .......+..+.++|+|.++.+....   +.+...|...........     ...
T Consensus       178 ~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~  256 (381)
T COG3391         178 NSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPR  256 (381)
T ss_pred             ecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCC
Confidence            6689999999977653321 1    12233444578999999977766544   478888877433322211     344


Q ss_pred             EEEECCCCCcccc
Q 004969          680 AAYTRPSSKSEIV  692 (721)
Q Consensus       680 ~v~fsP~~~~~~v  692 (721)
                      .+..+|+++.-++
T Consensus       257 ~v~~~p~g~~~yv  269 (381)
T COG3391         257 GVAVDPAGKAAYV  269 (381)
T ss_pred             ceeECCCCCEEEE
Confidence            5788888854444

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=96.74  E-value=0.18  Score=53.73  Aligned_cols=178  Identities=12%  Similarity=0.094  Sum_probs=112.2

Q ss_pred             eEEEEEeeCCCCEEEEEeCCCe-EEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-----CCcE
Q 004969          501 VLGLCWLKKYPSKLIAGSDNGS-LKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-----SKNI  574 (721)
Q Consensus       501 V~sl~fsp~d~~~LaSgs~DGt-VrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-----Dg~I  574 (721)
                      ..+++.+|..+..++.+-.-|+ ..+||..+++... .+........+.      ...|+++|.+++++=.     .|.|
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~-~~~a~~gRHFyG------Hg~fs~dG~~LytTEnd~~~g~G~I   79 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQ-RLWAPPGRHFYG------HGVFSPDGRLLYTTENDYETGRGVI   79 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceee-EEcCCCCCEEec------CEEEcCCCCEEEEeccccCCCcEEE
Confidence            3456667656777777776665 6789998877532 222222222222      3578899999998853     4889


Q ss_pred             EEEECC-CCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC------------------CCcEEEEECCCCCceeEEEec
Q 004969          575 ALYDIN-SGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF------------------DQDVKLWDLRQKPIQPCYTAS  635 (721)
Q Consensus       575 rlWDl~-s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~------------------DgtIrIWDlrs~~~~~~~~~~  635 (721)
                      -|||.. +-+.+.++.. |.-....+.+.|+|+ .|+++..                  +..+-.-|.++++......+.
T Consensus        80 gVyd~~~~~~ri~E~~s-~GIGPHel~l~pDG~-tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp  157 (305)
T PF07433_consen   80 GVYDAARGYRRIGEFPS-HGIGPHELLLMPDGE-TLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELP  157 (305)
T ss_pred             EEEECcCCcEEEeEecC-CCcChhhEEEcCCCC-EEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecC
Confidence            999999 6677888886 777778889999994 4544421                  234555566666654444452


Q ss_pred             --CCCCeE-EEEEecCCCEEEEEeCCC-------cEEEEEcCCC---------cccccccCeEEEEECCCC
Q 004969          636 --SSKGNV-MVCFSPDDHYLLGKGSGT-------SMFVQSLRGD---------PFRDFNMSILAAYTRPSS  687 (721)
Q Consensus       636 --~~~~~v-sl~fSpdg~~Lasgs~Dg-------~I~VWDl~g~---------~l~~~~~~V~~v~fsP~~  687 (721)
                        .|.-.+ -+++.++|..++..-..|       .+.+++..+.         ....+...+-++++++++
T Consensus       158 ~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g  228 (305)
T PF07433_consen  158 PDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDG  228 (305)
T ss_pred             ccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCC
Confidence              244444 688888888777654443       2334433211         123345678888888887

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.74  E-value=0.083  Score=61.24  Aligned_cols=104  Identities=12%  Similarity=0.139  Sum_probs=70.3

Q ss_pred             CCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCcE------------EEEEccccCCCeEEEEEcCCCCcEEEEEECCC
Q 004969          550 FDQLTSVHVNSMDELFLASGY-SKNIALYDINSGRR------------LQVFADMHKEHINVVKFSNHSPSIFATSSFDQ  616 (721)
Q Consensus       550 ~~~V~sv~~sp~~~~lls~g~-Dg~IrlWDl~s~~~------------v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~Dg  616 (721)
                      ......+.++|++.++++++. +.+|.++|+.+.+.            +.+..  -.......+|.++| +...|-.-|.
T Consensus       320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve--vGlGPLHTaFDg~G-~aytslf~ds  396 (635)
T PRK02888        320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE--LGLGPLHTAFDGRG-NAYTTLFLDS  396 (635)
T ss_pred             CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec--cCCCcceEEECCCC-CEEEeEeecc
Confidence            345678999999999998885 89999999997552            33333  23344567899998 7888888999


Q ss_pred             cEEEEECCCC------C-c-eeEEEecCCCCeEE------EEEecCCCEEEEEe
Q 004969          617 DVKLWDLRQK------P-I-QPCYTASSSKGNVM------VCFSPDDHYLLGKG  656 (721)
Q Consensus       617 tIrIWDlrs~------~-~-~~~~~~~~~~~~vs------l~fSpdg~~Lasgs  656 (721)
                      .|-.||+...      . . ..+..+..|..+--      =.-.|||+||++..
T Consensus       397 qv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n  450 (635)
T PRK02888        397 QIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN  450 (635)
T ss_pred             eeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence            9999998761      1 0 11222333332221      23367899988753

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.73  E-value=0.22  Score=52.07  Aligned_cols=181  Identities=8%  Similarity=0.150  Sum_probs=97.7

Q ss_pred             CCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-CCCcE
Q 004969          496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNI  574 (721)
Q Consensus       496 ~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~I  574 (721)
                      +-...+.+++|.|.++.++++....+.|...+.++ +. +       ..+.+...+..-.+++-.++ .++.+. .++.+
T Consensus        19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G-~v-l-------r~i~l~g~~D~EgI~y~g~~-~~vl~~Er~~~L   88 (248)
T PF06977_consen   19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDG-KV-L-------RRIPLDGFGDYEGITYLGNG-RYVLSEERDQRL   88 (248)
T ss_dssp             T--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---E-E-------EEEE-SS-SSEEEEEE-STT-EEEEEETTTTEE
T ss_pred             CccCCccccEEcCCCCeEEEEECCCCEEEEEcCCC-CE-E-------EEEeCCCCCCceeEEEECCC-EEEEEEcCCCcE
Confidence            55567999999965666777778888888888753 22 1       23344444567788885444 555555 48899


Q ss_pred             EEEECCCCc------EEEEEc----cccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCC---CCceeEEEe---c---
Q 004969          575 ALYDINSGR------RLQVFA----DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQ---KPIQPCYTA---S---  635 (721)
Q Consensus       575 rlWDl~s~~------~v~~l~----~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs---~~~~~~~~~---~---  635 (721)
                      .++++....      ....+.    ..+...+-.++|+|.+. .++.+-...-.++|.++.   .........   .   
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~-~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~  167 (248)
T PF06977_consen   89 YIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTN-RLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDK  167 (248)
T ss_dssp             EEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTT-EEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT
T ss_pred             EEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCC-EEEEEeCCCChhhEEEccccCccceeecccccccccc
Confidence            999884321      112222    12456789999999884 444555565566776654   111111111   1   


Q ss_pred             CC-CCeEEEEEecC-CCEEEEEeCCCcEEEEEcCCCcccccc------------cCeEEEEECCCC
Q 004969          636 SS-KGNVMVCFSPD-DHYLLGKGSGTSMFVQSLRGDPFRDFN------------MSILAAYTRPSS  687 (721)
Q Consensus       636 ~~-~~~vsl~fSpd-g~~Lasgs~Dg~I~VWDl~g~~l~~~~------------~~V~~v~fsP~~  687 (721)
                      .. ....+++++|. |++++-+..+..+..+|..|++...+.            ...-.++|.|+|
T Consensus       168 ~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G  233 (248)
T PF06977_consen  168 LFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG  233 (248)
T ss_dssp             --SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT-
T ss_pred             ceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCC
Confidence            11 12237899995 455566666778888888777543221            147779999999

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.73  E-value=0.0031  Score=73.05  Aligned_cols=106  Identities=8%  Similarity=0.082  Sum_probs=82.7

Q ss_pred             EEEecCCCEEEEEe----CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeE
Q 004969          556 VHVNSMDELFLASG----YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPC  631 (721)
Q Consensus       556 v~~sp~~~~lls~g----~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~  631 (721)
                      .+|||..+.+++++    ..|+|.|| ..+|++.+...  ..-.+++++|+|.. -.++.|-.-|.+.+|...+.+. ..
T Consensus        21 ~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt--~P~hatSLCWHpe~-~vLa~gwe~g~~~v~~~~~~e~-ht   95 (1416)
T KOG3617|consen   21 SSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVT--YPVHATSLCWHPEE-FVLAQGWEMGVSDVQKTNTTET-HT   95 (1416)
T ss_pred             cccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccc--cceehhhhccChHH-HHHhhccccceeEEEecCCcee-ee
Confidence            47999999998887    36889888 46677665544  44567789999987 7888999999999999887542 22


Q ss_pred             EEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          632 YTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       632 ~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                      . ...|..++ .+.|||+|..++++..-|.+.+|...
T Consensus        96 v-~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   96 V-VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             e-ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            2 23344444 89999999999999999999999765

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.71  E-value=0.011  Score=64.45  Aligned_cols=163  Identities=11%  Similarity=0.021  Sum_probs=111.1

Q ss_pred             CCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCccee-EeccCCCeEEEEEecCCCEEEEEeC-CCc
Q 004969          496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTV-TFDEFDQLTSVHVNSMDELFLASGY-SKN  573 (721)
Q Consensus       496 ~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~-~~~~~~~V~sv~~sp~~~~lls~g~-Dg~  573 (721)
                      -|...|+.+.-  ...+++++++.||.++.|.-..-.. +      .-+. ...|-..|.+++.+.++-.+.+++. |..
T Consensus         7 mhrd~i~hv~~--tka~fiiqASlDGh~KFWkKs~isG-v------EfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs   77 (558)
T KOG0882|consen    7 MHRDVITHVFP--TKAKFIIQASLDGHKKFWKKSRISG-V------EFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHS   77 (558)
T ss_pred             cccceeeeEee--ehhheEEeeecchhhhhcCCCCccc-e------eehhhhHHHHHHHHhhhccccceeEeeccCcccc
Confidence            47777887764  4678999999999999998654111 0      0000 1123355778888788888888777 999


Q ss_pred             EEEEECCCCcEEEEEccc-cCCCeEEEEEcCCCC-cEEE-EEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCC
Q 004969          574 IALYDINSGRRLQVFADM-HKEHINVVKFSNHSP-SIFA-TSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDD  649 (721)
Q Consensus       574 IrlWDl~s~~~v~~l~~~-h~~~V~sI~fsPdg~-~lLa-Sgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg  649 (721)
                      ++++|+.+-..+..++.. -.+.+.. ..+|... ..++ +.-.++.|.++|-+...+...+.-.-|..++ .+.+.|.+
T Consensus        78 ~KvfDvEn~DminmiKL~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~  156 (558)
T KOG0882|consen   78 VKVFDVENFDMINMIKLVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAG  156 (558)
T ss_pred             eeEEEeeccchhhhcccccCCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccc
Confidence            999999875544333210 1222221 1222211 1333 3445789999999987766666666677777 89999999


Q ss_pred             CEEEEEeCCCcEEEEEcCC
Q 004969          650 HYLLGKGSGTSMFVQSLRG  668 (721)
Q Consensus       650 ~~Lasgs~Dg~I~VWDl~g  668 (721)
                      .-.++....|.|.-|...+
T Consensus       157 Ds~vSiD~~gmVEyWs~e~  175 (558)
T KOG0882|consen  157 DSAVSIDISGMVEYWSAEG  175 (558)
T ss_pred             cceeeccccceeEeecCCC
Confidence            9999999999999999875

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.68  E-value=0.0017  Score=67.29  Aligned_cols=35  Identities=34%  Similarity=0.535  Sum_probs=31.1

Q ss_pred             chHHHHHHHHHhCccccccCCCCcChHHHHhhhcc
Q 004969          334 FEKHYRDYMIASLPKLKFLDNLPIRKVDRERATIT  368 (721)
Q Consensus       334 ~~~~yRe~~I~~Lp~Lk~Ldn~~I~k~ere~a~~~  368 (721)
                      .-..||..++..||+|+-|||.+++..+-+.|.+.
T Consensus       104 ag~nYR~~VLR~LPnLkKLDnv~VteeEle~ALr~  138 (388)
T KOG2123|consen  104 AGQNYRRKVLRVLPNLKKLDNVPVTEEELEEALRD  138 (388)
T ss_pred             cchhHHHHHHHHcccchhccCccccHHHHHHHHhc
Confidence            45789999999999999999999999988877664

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.67  E-value=0.073  Score=48.23  Aligned_cols=102  Identities=19%  Similarity=0.263  Sum_probs=71.3

Q ss_pred             eEEEEEeeCCC---CEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 004969          501 VLGLCWLKKYP---SKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALY  577 (721)
Q Consensus       501 V~sl~fsp~d~---~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlW  577 (721)
                      |++++++..++   +.|++||.|..||+|+-..            ....+...+.|++++-.. ...|+.+-.+|+|-+|
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e------------~~~Ei~e~~~v~~L~~~~-~~~F~Y~l~NGTVGvY   68 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE------------IVAEITETDKVTSLCSLG-GGRFAYALANGTVGVY   68 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc------------EEEEEecccceEEEEEcC-CCEEEEEecCCEEEEE
Confidence            67777765443   6899999999999998765            133444556677777644 4789999999999999


Q ss_pred             ECCCCcEEEEEccccCCCeEEEEEcC---CCCcEEEEEECCCcEE
Q 004969          578 DINSGRRLQVFADMHKEHINVVKFSN---HSPSIFATSSFDQDVK  619 (721)
Q Consensus       578 Dl~s~~~v~~l~~~h~~~V~sI~fsP---dg~~lLaSgs~DgtIr  619 (721)
                      +-  ...++..+  .+..+.++++..   +|..-|++|-.+|.|-
T Consensus        69 ~~--~~RlWRiK--SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   69 DR--SQRLWRIK--SKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eC--cceeeeec--cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            75  44455555  334466665543   3444788898888764

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.65  E-value=0.00067  Score=51.10  Aligned_cols=39  Identities=23%  Similarity=0.486  Sum_probs=29.3

Q ss_pred             ceeeEEecccccccccccccccccccccchhccccccchhh
Q 004969          147 KRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNL  187 (721)
Q Consensus       147 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (721)
                      ++|++|.|. .|.|+.|+. -|..||+|+.|++.+|+|.++
T Consensus         1 ~~L~~L~l~-~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    1 KNLEELDLS-NNQITDLPP-ELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             TT-SEEEET-SSS-SSHGG-HGTTCTTSSEEEETSSCCSBE
T ss_pred             CcceEEEcc-CCCCcccCc-hHhCCCCCCEEEecCCCCCCC
Confidence            367888888 778888865 478888888888888888865

...

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.64  E-value=0.17  Score=56.53  Aligned_cols=207  Identities=15%  Similarity=0.116  Sum_probs=113.3

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEE-------------------------EEee----------------
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIV-------------------------SYIP----------------  493 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i-------------------------~~l~----------------  493 (721)
                      .|+.+.|.+ +..-+++|...|.|.||.+...+..                         ..+.                
T Consensus         3 ~v~~vs~a~-~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFAP-ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             -EEEEEEET-TTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred             eEEEEEecC-CCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence            589999999 7777999999999999975321110                         0000                


Q ss_pred             cCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEec-----CC---CEE
Q 004969          494 SFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNS-----MD---ELF  565 (721)
Q Consensus       494 ~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp-----~~---~~l  565 (721)
                      .+...++|++++.+  +-.+++.|..+|.+.|.|+++........-.. ....-.....|+++.|..     ++   -.+
T Consensus        82 ~~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~-~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L  158 (395)
T PF08596_consen   82 LDAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRE-SFLSKSSSSYVTSIEFSVMTLGGDGYSSICL  158 (395)
T ss_dssp             E---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG---T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred             eeccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccc-cccccccccCeeEEEEEEEecCCCcccceEE
Confidence            01346889999975  67799999999999999998754432211100 000111223466676652     11   357


Q ss_pred             EEEeCCCcEEEEECC-C--CcEEEEEcc---ccCCCeEEEE-EcCCCC-------------------cEEEEEECCCcEE
Q 004969          566 LASGYSKNIALYDIN-S--GRRLQVFAD---MHKEHINVVK-FSNHSP-------------------SIFATSSFDQDVK  619 (721)
Q Consensus       566 ls~g~Dg~IrlWDl~-s--~~~v~~l~~---~h~~~V~sI~-fsPdg~-------------------~lLaSgs~DgtIr  619 (721)
                      ++|...|.+.+|.+. .  +.....+.+   .+.++|..|. |+.+.+                   .-++....+..+|
T Consensus       159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ir  238 (395)
T PF08596_consen  159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIR  238 (395)
T ss_dssp             EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEE
T ss_pred             EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceE
Confidence            788888999999775 1  222222221   2556666655 432210                   1234444577899


Q ss_pred             EEECCCCCceeEEEecCCCCeE--EEEE-----ecCCCEEEEEeCCCcEEEEEcCC
Q 004969          620 LWDLRQKPIQPCYTASSSKGNV--MVCF-----SPDDHYLLGKGSGTSMFVQSLRG  668 (721)
Q Consensus       620 IWDlrs~~~~~~~~~~~~~~~v--sl~f-----Spdg~~Lasgs~Dg~I~VWDl~g  668 (721)
                      ++...+.+..  ++.. .....  .+.+     ...+..|++-..+|.++++.+.+
T Consensus       239 v~~~~~~k~~--~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~  291 (395)
T PF08596_consen  239 VFKPPKSKGA--HKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS  291 (395)
T ss_dssp             EE-TT---EE--EEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT
T ss_pred             EEeCCCCccc--ceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCC
Confidence            9999887542  2222 22222  3445     33677888889999999999873

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.60  E-value=0.2  Score=54.04  Aligned_cols=203  Identities=13%  Similarity=0.160  Sum_probs=117.6

Q ss_pred             EEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC--cccc
Q 004969          460 EYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP--SIRG  537 (721)
Q Consensus       460 afsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~--~~~~  537 (721)
                      .|.|..+.++.+--..+.|.-|+..+|+... +.   +.+.+.++... ..+..|+++...  +.+++.+.+..  ....
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~---~p~~~~~~~~~-d~~g~Lv~~~~g--~~~~~~~~~~~~t~~~~  103 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKRV-FP---SPGGFSSGALI-DAGGRLIACEHG--VRLLDPDTGGKITLLAE  103 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EE---CCCCcccceee-cCCCeEEEEccc--cEEEeccCCceeEEecc
Confidence            4777445567777788999999998775432 22   22334555543 445566665443  55666654332  1111


Q ss_pred             cccCcceeEeccCCCeEEEEEecCCCEEEEEeC-----------CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCC
Q 004969          538 MHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-----------SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSP  606 (721)
Q Consensus       538 ~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-----------Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~  606 (721)
                      ......      ....+.+.+.|+|...+....           -|.++.+|. .+..++.+.. +-...+.|+|+||+.
T Consensus       104 ~~~~~~------~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~-~~~~~NGla~SpDg~  175 (307)
T COG3386         104 PEDGLP------LNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDD-DLTIPNGLAFSPDGK  175 (307)
T ss_pred             ccCCCC------cCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecC-cEEecCceEECCCCC
Confidence            110110      122466777787776665433           133445554 4666665554 566778999999995


Q ss_pred             cEEEEEECCCcEEEEECCC--C---CceeEEEecCCCCeE-EEEEecCCCEEEEEeCCC-cEEEEEcCCCcccccccC
Q 004969          607 SIFATSSFDQDVKLWDLRQ--K---PIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGT-SMFVQSLRGDPFRDFNMS  677 (721)
Q Consensus       607 ~lLaSgs~DgtIrIWDlrs--~---~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg-~I~VWDl~g~~l~~~~~~  677 (721)
                      .++++=+..+.|.-|++..  +   ............+.- .++...+|.+.+++..+| .|.+|+..|+.+..+..+
T Consensus       176 tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l~~~i~lP  253 (307)
T COG3386         176 TLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGKLLGEIKLP  253 (307)
T ss_pred             EEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCCCcEEEEEECC
Confidence            4555555568888887752  1   111122222222332 688888999886555554 899999988776655443

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.56  E-value=0.58  Score=52.06  Aligned_cols=198  Identities=11%  Similarity=0.086  Sum_probs=131.7

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeC---CCeEEEEEcCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD---NGSLKLYDIRHM  531 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~---DGtVrIWDi~~~  531 (721)
                      .+..++.++...+..+....++.|.+.|..+.+....... +.  ....+++. +++..+..+..   ++++.+.|..+.
T Consensus        75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v-G~--~P~~~~~~-~~~~~vYV~n~~~~~~~vsvid~~t~  150 (381)
T COG3391          75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV-GL--GPVGLAVD-PDGKYVYVANAGNGNNTVSVIDAATN  150 (381)
T ss_pred             cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee-cc--CCceEEEC-CCCCEEEEEecccCCceEEEEeCCCC
Confidence            4677888884444666666779999999888777776653 32  56678887 55555555444   688888888775


Q ss_pred             CCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEE-E---EccccCCCeEEEEEcCCCC
Q 004969          532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQ-V---FADMHKEHINVVKFSNHSP  606 (721)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~v~-~---l~~~h~~~V~sI~fsPdg~  606 (721)
                      .....         .+....+ ..+++.|++..++++. .++.|.+.|.......+ .   ... -......+.++|+|.
T Consensus       151 ~~~~~---------~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~-~~~~P~~i~v~~~g~  219 (381)
T COG3391         151 KVTAT---------IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG-VGTGPAGIAVDPDGN  219 (381)
T ss_pred             eEEEE---------EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccc-cCCCCceEEECCCCC
Confidence            54221         1112233 7889999999777776 68999999977665553 1   011 233456789999995


Q ss_pred             cEEEEEECC--CcEEEEECCCCCceeEEEecCCC-CeEEEEEecCCCEEEEEeCC-CcEEEEEcCC
Q 004969          607 SIFATSSFD--QDVKLWDLRQKPIQPCYTASSSK-GNVMVCFSPDDHYLLGKGSG-TSMFVQSLRG  668 (721)
Q Consensus       607 ~lLaSgs~D--gtIrIWDlrs~~~~~~~~~~~~~-~~vsl~fSpdg~~Lasgs~D-g~I~VWDl~g  668 (721)
                      +..++-..+  +.+...|..++..... ...... ....+..+|+|.++.+.... +.+.+-|...
T Consensus       220 ~~yV~~~~~~~~~v~~id~~~~~v~~~-~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~  284 (381)
T COG3391         220 RVYVANDGSGSNNVLKIDTATGNVTAT-DLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGAT  284 (381)
T ss_pred             EEEEEeccCCCceEEEEeCCCceEEEe-ccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence            455544444  6899999988754322 112222 34478999999999888544 7888888763

>smart00320 WD40 WD40 repeats

Probab=96.56  E-value=0.0064  Score=41.20  Aligned_cols=39  Identities=33%  Similarity=0.581  Sum_probs=33.2

Q ss_pred             CcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 004969          582 GRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWD  622 (721)
Q Consensus       582 ~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWD  622 (721)
                      ++++..+.. |...|.++.|+|.+ ..+++++.|+.+++||
T Consensus         2 ~~~~~~~~~-~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKG-HTGPVTSVAFSPDG-KYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEe-cCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence            345566665 88999999999988 7999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.53  E-value=0.039  Score=65.98  Aligned_cols=160  Identities=13%  Similarity=0.124  Sum_probs=102.9

Q ss_pred             CeEEEEEeCCCCCEEEEE-ECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEee----CCCCEEEEEeCCCeEEEEEcC
Q 004969          455 RPRQFEYHPSISCLMVFG-TLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLK----KYPSKLIAGSDNGSLKLYDIR  529 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasG-s~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp----~d~~~LaSgs~DGtVrIWDi~  529 (721)
                      .|..+-.+..+.++|+.. .....|+-.|++.|+++..+... ...+|..++-..    ..+...+.|-.+..+..||.+
T Consensus       482 ~P~k~mL~~~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~-~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR  560 (794)
T PF08553_consen  482 TPKKAMLHDQDRNMILLDPNNPNKLYKMDLERGKVVEEWKVH-DDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPR  560 (794)
T ss_pred             CcchhhhhccccceEeecCCCCCceEEEecCCCcEEEEeecC-CCcceeEecccccccccCCCceEEEECCCceEEeccC
Confidence            344444455466666654 34578999999999999999852 234466664210    123455667788899999998


Q ss_pred             CCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEE
Q 004969          530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIF  609 (721)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lL  609 (721)
                      -....+..    .....+.......|++- ..+++|++|+.+|.||+||- .|+..++.-.+-+.+|..|..+.||. ++
T Consensus       561 ~~~~k~v~----~~~k~Y~~~~~Fs~~aT-t~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGk-wi  633 (794)
T PF08553_consen  561 LSGNKLVD----SQSKQYSSKNNFSCFAT-TEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGK-WI  633 (794)
T ss_pred             CCCCceee----ccccccccCCCceEEEe-cCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCc-EE
Confidence            64321110    01112333345677766 56789999999999999994 44444443333789999999999994 44


Q ss_pred             EEEECCCcEEEEEC
Q 004969          610 ATSSFDQDVKLWDL  623 (721)
Q Consensus       610 aSgs~DgtIrIWDl  623 (721)
                      ++.+ +..+-++++
T Consensus       634 laTc-~tyLlLi~t  646 (794)
T PF08553_consen  634 LATC-KTYLLLIDT  646 (794)
T ss_pred             EEee-cceEEEEEE
Confidence            4333 456777775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=96.45  E-value=0.0058  Score=65.35  Aligned_cols=109  Identities=17%  Similarity=0.206  Sum_probs=77.3

Q ss_pred             cccceEeeccCCchhh---HHHHHhhcCCccceEeeccccccccc------cccccc-ceeeEEeccccccccc----cc
Q 004969           99 DQKLRVVDLHDSSFGK---DFIRNLSQRGLMCEVLNLRSSRFRKL------NMIGEF-KRIHTLNLDYSTSLTS----FK  164 (721)
Q Consensus        99 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~l~~~~~~~~~~----~~  164 (721)
                      +.+|+.++|.++.|..   .++..+.+. -.-+.|+|+.|++...      ..++.+ .+|..|+|. .+.++.    --
T Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~-~n~l~~~~~~~~  157 (319)
T cd00116          80 GCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLG-RNRLEGASCEAL  157 (319)
T ss_pred             cCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcC-CCcCCchHHHHH
Confidence            6799999999988853   445555555 5688899998888631      233456 788999999 566662    11


Q ss_pred             ccccccccccchhccccccchh-hhHH-HHHhhcCCcchhhccceee
Q 004969          165 EDCFSCMPNLICLSMCETRVGN-LWTT-IAALSKLPSLAELRFQNWL  209 (721)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~  209 (721)
                      ...|..+++|+.|.|.+|.+.. -... .+++.++++|++|.+..|-
T Consensus       158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~  204 (319)
T cd00116         158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG  204 (319)
T ss_pred             HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc
Confidence            2467788899999999998873 1222 3467788899999877663

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.45  E-value=0.012  Score=66.76  Aligned_cols=92  Identities=12%  Similarity=0.133  Sum_probs=73.6

Q ss_pred             CeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeE-EEEEcCCCCcEEEEEECCCcEEEEECCCCCcee
Q 004969          552 QLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHIN-VVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQP  630 (721)
Q Consensus       552 ~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~-sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~  630 (721)
                      .+.-+.|+|.-+.+|.+..+|.+.++-+. .+.++++.- |+..++ +++|.||| +++|.|-.||+|++-|+.++....
T Consensus        22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~-p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPI-PGENVTASLCWRPDG-KLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccC-CCCccceeeeecCCC-CEEEEEecCCeEEEEEccCCCcee
Confidence            46788999999999999999999999888 888888885 677777 99999999 899999999999999999885433


Q ss_pred             EEEecCCCCeEEEEEe
Q 004969          631 CYTASSSKGNVMVCFS  646 (721)
Q Consensus       631 ~~~~~~~~~~vsl~fS  646 (721)
                      -+.+.......++.|+
T Consensus        99 ~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   99 SFLFSVETDISKGIWD  114 (665)
T ss_pred             ccccccccchheeecc
Confidence            2223333333366665

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.41  E-value=0.85  Score=47.21  Aligned_cols=128  Identities=10%  Similarity=0.044  Sum_probs=88.2

Q ss_pred             EEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccc
Q 004969          460 EYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMH  539 (721)
Q Consensus       460 afsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~  539 (721)
                      ...++...+++.|+..|.+.--|.++|+.+..-..   ...|-+-+..  -+++++.|...|.+.+.+.+++....    
T Consensus        17 VV~~dskT~v~igSHs~~~~avd~~sG~~~We~il---g~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w----   87 (354)
T KOG4649|consen   17 VVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAIL---GVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIW----   87 (354)
T ss_pred             EEecCCceEEEEecCCceEEEecCCCCcEEeehhh---CceeeeeeEE--ECCEEEEEEccCcEEEEEecchhhee----
Confidence            34454567889999999999999999988765332   2334433332  46789999999999999999976522    


Q ss_pred             cCcceeEeccCCCeE-EEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcC
Q 004969          540 YGAGTVTFDEFDQLT-SVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSN  603 (721)
Q Consensus       540 ~~~~~~~~~~~~~V~-sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsP  603 (721)
                            .|...+.|. .....++++.+..++.|++.+..|.++...+.+.+- ..+...+-+..|
T Consensus        88 ------~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskc-gG~~f~sP~i~~  145 (354)
T KOG4649|consen   88 ------NFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC-GGGTFVSPVIAP  145 (354)
T ss_pred             ------eeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEeccc-CCceeccceecC
Confidence                  221111111 122346889999999999999999999999988773 233333445555

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.41  E-value=0.08  Score=59.66  Aligned_cols=185  Identities=14%  Similarity=0.073  Sum_probs=105.5

Q ss_pred             eEEEEEeCCCCCEEEEEE---CC-CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEE--EcC
Q 004969          456 PRQFEYHPSISCLMVFGT---LD-GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLY--DIR  529 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs---~D-G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIW--Di~  529 (721)
                      +..-.|+| ++..++--+   .. ..+.++++.+++........++.   ..-+|+|....++++...||...||  |+.
T Consensus       195 ~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~---~~P~fspDG~~l~f~~~rdg~~~iy~~dl~  270 (425)
T COG0823         195 ILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN---GAPAFSPDGSKLAFSSSRDGSPDIYLMDLD  270 (425)
T ss_pred             eeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc---CCccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence            55567888 555544332   22 46999999988876666544443   3456885444455666778876665  554


Q ss_pred             CCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-CC--cEEEEECCCCcEEEEEccccCCCeEEEEEcCCCC
Q 004969          530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-SK--NIALYDINSGRRLQVFADMHKEHINVVKFSNHSP  606 (721)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-Dg--~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~  606 (721)
                      ++..  ..+....+..        ..=.|+|+|..++-+++ .|  .|.++|+..+...+...  ..+.-..-.|+|+|.
T Consensus       271 ~~~~--~~Lt~~~gi~--------~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~--~~~~~~~p~~SpdG~  338 (425)
T COG0823         271 GKNL--PRLTNGFGIN--------TSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF--SGGGNSNPVWSPDGD  338 (425)
T ss_pred             CCcc--eecccCCccc--------cCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec--cCCCCcCccCCCCCC
Confidence            4331  2122221111        24468899999988875 44  47777777665533322  222222778999994


Q ss_pred             cEEEEEECCCc--EEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCC
Q 004969          607 SIFATSSFDQD--VKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG  658 (721)
Q Consensus       607 ~lLaSgs~Dgt--IrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D  658 (721)
                      .++.....+|.  |.+.|+.++..  ...+......-.-.|.|+|..+...+..
T Consensus       339 ~i~~~~~~~g~~~i~~~~~~~~~~--~~~lt~~~~~e~ps~~~ng~~i~~~s~~  390 (425)
T COG0823         339 KIVFESSSGGQWDIDKNDLASGGK--IRILTSTYLNESPSWAPNGRMIMFSSGQ  390 (425)
T ss_pred             EEEEEeccCCceeeEEeccCCCCc--EEEccccccCCCCCcCCCCceEEEeccC
Confidence            44444433454  67777776643  2222222222246788888877655433

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.37  E-value=0.14  Score=57.76  Aligned_cols=154  Identities=16%  Similarity=0.125  Sum_probs=90.5

Q ss_pred             CCeEEEEEeeCCCCEEEEE---eCC-CeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-CCc
Q 004969          499 NSVLGLCWLKKYPSKLIAG---SDN-GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-SKN  573 (721)
Q Consensus       499 ~~V~sl~fsp~d~~~LaSg---s~D-GtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-Dg~  573 (721)
                      ..+..-+|+ +++..++-.   ... ..+.++|+.+++....        ..+  ...-..-+|+|+|..++.+.. ||.
T Consensus       193 ~~~~~p~ws-~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i--------~~~--~g~~~~P~fspDG~~l~f~~~rdg~  261 (425)
T COG0823         193 SLILTPAWS-PDGKKLAYVSFELGGCPRIYYLDLNTGKRPVI--------LNF--NGNNGAPAFSPDGSKLAFSSSRDGS  261 (425)
T ss_pred             cceeccccC-cCCCceEEEEEecCCCceEEEEeccCCcccee--------ecc--CCccCCccCCCCCCEEEEEECCCCC
Confidence            455566777 444433322   122 4589999998765211        111  122234578899998887764 554


Q ss_pred             --EEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEE--EEECCCCCceeEEEecCCCCeEEEEEecCC
Q 004969          574 --IALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVK--LWDLRQKPIQPCYTASSSKGNVMVCFSPDD  649 (721)
Q Consensus       574 --IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIr--IWDlrs~~~~~~~~~~~~~~~vsl~fSpdg  649 (721)
                        |.+.|+.++...+ +.. ..+.-..-.|+|+|..++.+.+..|.-.  ++|...+.. ...+...... ..-.|+|||
T Consensus       262 ~~iy~~dl~~~~~~~-Lt~-~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~-~~p~~SpdG  337 (425)
T COG0823         262 PDIYLMDLDGKNLPR-LTN-GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGN-SNPVWSPDG  337 (425)
T ss_pred             ccEEEEcCCCCccee-ccc-CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCC-cCccCCCCC
Confidence              7777888776333 542 2222336679999976777777777644  455555433 2223322222 267899999


Q ss_pred             CEEEEEeCC-Cc--EEEEEcC
Q 004969          650 HYLLGKGSG-TS--MFVQSLR  667 (721)
Q Consensus       650 ~~Lasgs~D-g~--I~VWDl~  667 (721)
                      ++++..+.. |.  |.+.|+.
T Consensus       338 ~~i~~~~~~~g~~~i~~~~~~  358 (425)
T COG0823         338 DKIVFESSSGGQWDIDKNDLA  358 (425)
T ss_pred             CEEEEEeccCCceeeEEeccC
Confidence            999877643 43  5556554

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.31  E-value=0.4  Score=49.51  Aligned_cols=69  Identities=12%  Similarity=0.126  Sum_probs=52.5

Q ss_pred             CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCccc
Q 004969          465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIR  536 (721)
Q Consensus       465 dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~  536 (721)
                      -+++++.|...|.+++.+.++|.....+...   +.|.+-+-..+++..+..|+.|++....|..+.....+
T Consensus        62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~---~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyk  130 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL---ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYK  130 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecchhheeeeeeh---hhhccceEEcCCCceEEEecCCCcEEEecccccceEEe
Confidence            3578999999999999999999877766542   22332222346789999999999999999998665433

>smart00320 WD40 WD40 repeats

Probab=96.30  E-value=0.013  Score=39.56  Aligned_cols=38  Identities=24%  Similarity=0.457  Sum_probs=31.4

Q ss_pred             eEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEE
Q 004969          487 NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYD  527 (721)
Q Consensus       487 ~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWD  527 (721)
                      .....+.  .|...|.++.|. +.+..+++++.||.+++|+
T Consensus         3 ~~~~~~~--~~~~~i~~~~~~-~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLK--GHTGPVTSVAFS-PDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEE--ecCCceeEEEEC-CCCCEEEEecCCCeEEEcC
Confidence            4455555  678899999998 5668999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=96.28  E-value=0.0098  Score=63.56  Aligned_cols=148  Identities=20%  Similarity=0.211  Sum_probs=97.0

Q ss_pred             cccCCCchhHHHHHhhcCCCcceeeEeecCCccccchHHHHHHHHHhccc--ceEeeccCCchhh--HHHH---HhhcCC
Q 004969           52 YLKDIDFQPLLEVCMQIGATEIEAVDVRSGTSCMLTGEFALSLMHAIDQK--LRVVDLHDSSFGK--DFIR---NLSQRG  124 (721)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~---~~~~~~  124 (721)
                      ++.+.|...++.-+..     ++.+++.   .|.++++.+..+-..+...  |+.+++.++.+++  +.++   .....-
T Consensus         9 ~l~~~~~~~~~~~l~~-----L~~l~l~---~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~   80 (319)
T cd00116           9 LLKTERATELLPKLLC-----LQVLRLE---GNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG   80 (319)
T ss_pred             cccccchHHHHHHHhh-----ccEEeec---CCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence            3445555555555544     5666663   4677777776666555444  9999999988883  3333   223334


Q ss_pred             ccceEeecccccccc--cccccccce---eeEEeccccccccccc----ccccccc-cccchhccccccchh--hhHHHH
Q 004969          125 LMCEVLNLRSSRFRK--LNMIGEFKR---IHTLNLDYSTSLTSFK----EDCFSCM-PNLICLSMCETRVGN--LWTTIA  192 (721)
Q Consensus       125 ~~~~~~~~~~~~~~~--~~~~~~~~~---~~~l~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~  192 (721)
                      -.=+.|+|+++++..  -..++.+.+   |+.|+|. ++.++.-.    ...+..+ |+|+.|.|.+|++..  +=.-..
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls-~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~  159 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLN-NNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK  159 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhccCcccEEEee-CCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence            567889999999873  223344555   9999999 66676311    2345666 999999999999872  212234


Q ss_pred             HhhcCCcchhhcccee
Q 004969          193 ALSKLPSLAELRFQNW  208 (721)
Q Consensus       193 ~~~~~~~~~~~~~~~~  208 (721)
                      .+..+++|++|++..|
T Consensus       160 ~~~~~~~L~~L~l~~n  175 (319)
T cd00116         160 ALRANRDLKELNLANN  175 (319)
T ss_pred             HHHhCCCcCEEECcCC
Confidence            6777888999987654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.17  E-value=0.041  Score=63.31  Aligned_cols=115  Identities=15%  Similarity=0.193  Sum_probs=84.0

Q ss_pred             eEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeE-
Q 004969          553 LTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPC-  631 (721)
Q Consensus       553 V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~-  631 (721)
                      |.--++...+.+++.|++-|.+++|+-..++....-.++..+.+.....+++. +++|.|+..|.|.++-+........ 
T Consensus        36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v~ql~~~~p~~~~  114 (726)
T KOG3621|consen   36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVE-YLVAAGTASGRVSVFQLNKELPRDLD  114 (726)
T ss_pred             EEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchh-HhhhhhcCCceEEeehhhccCCCcce
Confidence            33445556889999999999999999887765443332244556677788887 8999999999999998877432222 


Q ss_pred             EEecC---CCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004969          632 YTASS---SKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG  668 (721)
Q Consensus       632 ~~~~~---~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g  668 (721)
                      +..+.   |...| +++|++++..+++|...|.|..-.+..
T Consensus       115 ~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  115 YVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             eeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            21121   33344 899999999999999999998776653

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.12  E-value=1.3  Score=48.53  Aligned_cols=238  Identities=13%  Similarity=0.142  Sum_probs=123.1

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCC----------------CCCeEEEEEeeCCCCEEEEEe
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGA----------------MNSVLGLCWLKKYPSKLIAGS  518 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H----------------~~~V~sl~fsp~d~~~LaSgs  518 (721)
                      .+....|+| +|+.+|... ++.|.+++..++...+ +...|-                -+.-.++-|+ +++++|+...
T Consensus        44 ~~~~~~~sP-~g~~~~~v~-~~nly~~~~~~~~~~~-lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WS-pd~~~la~~~  119 (353)
T PF00930_consen   44 KLQDAKWSP-DGKYIAFVR-DNNLYLRDLATGQETQ-LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWS-PDSKYLAFLR  119 (353)
T ss_dssp             TBSEEEE-S-SSTEEEEEE-TTEEEEESSTTSEEEE-SES--TTTEEESB--HHHHHHTSSSSBSEEE--TTSSEEEEEE
T ss_pred             ccccceeec-CCCeeEEEe-cCceEEEECCCCCeEE-eccccceeEEcCccceeccccccccccceEEC-CCCCEEEEEE
Confidence            467789999 899988876 5789999988774433 322220                1123467798 6777776654


Q ss_pred             C-CCeEEEEEcC---CCC---Cccccc-------------------ccCc-ceeEe-----ccCCCeEEEEEecCCCEEE
Q 004969          519 D-NGSLKLYDIR---HMP---PSIRGM-------------------HYGA-GTVTF-----DEFDQLTSVHVNSMDELFL  566 (721)
Q Consensus       519 ~-DGtVrIWDi~---~~~---~~~~~~-------------------~~~~-~~~~~-----~~~~~V~sv~~sp~~~~ll  566 (721)
                      . +..|+.+.+.   ...   +.....                   .... ..+..     .....+..+.|.+++..++
T Consensus       120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~  199 (353)
T PF00930_consen  120 FDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLW  199 (353)
T ss_dssp             EE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred             ECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEE
Confidence            3 3334443322   111   000000                   0000 01111     1123378899988888455


Q ss_pred             EEe--CC---CcEEEEECCCCcEEEEEccccCCCe---EEEEEc-CCCCcEEEEEECCCcEEEEECCCCCceeEEEecCC
Q 004969          567 ASG--YS---KNIALYDINSGRRLQVFADMHKEHI---NVVKFS-NHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSS  637 (721)
Q Consensus       567 s~g--~D---g~IrlWDl~s~~~v~~l~~~h~~~V---~sI~fs-Pdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~  637 (721)
                      +.-  .+   ..+.++|..++.............|   ....|. +++..++.....||.-+||-+........ .+...
T Consensus       200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G  278 (353)
T PF00930_consen  200 VQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSG  278 (353)
T ss_dssp             EEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-S
T ss_pred             EEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccC
Confidence            443  22   3477788887765444432233333   255554 77766777777888766654443222222 33333


Q ss_pred             CCeE--EEEEecCCCEEE-EEeCCC----cEEEEEcC-CCccccc---ccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          638 KGNV--MVCFSPDDHYLL-GKGSGT----SMFVQSLR-GDPFRDF---NMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       638 ~~~v--sl~fSpdg~~La-sgs~Dg----~I~VWDl~-g~~l~~~---~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      .-.+  .+.|+++++.|+ ++..++    .++.-++. +...+..   ......+.|+|+++      .++.++++.
T Consensus       279 ~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~------y~v~~~s~~  349 (353)
T PF00930_consen  279 DWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGK------YYVDTYSGP  349 (353)
T ss_dssp             SS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSS------EEEEEEESS
T ss_pred             ceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCC------EEEEEEcCC
Confidence            3334  588999887665 444322    34444555 4333322   12225899999985      455555543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.11  E-value=0.028  Score=63.86  Aligned_cols=74  Identities=23%  Similarity=0.368  Sum_probs=63.3

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeE-EEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVL-GLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~-sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~  533 (721)
                      .+.-+.|+| .-.++|.+..+|.|.+..+. -+.+.+++.  |...++ +++|. ++|+.++.|-.||+|++.|++++..
T Consensus        22 ~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~--p~~~v~~sL~W~-~DGkllaVg~kdG~I~L~Dve~~~~   96 (665)
T KOG4640|consen   22 NIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPI--PGENVTASLCWR-PDGKLLAVGFKDGTIRLHDVEKGGR   96 (665)
T ss_pred             ceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccC--CCCccceeeeec-CCCCEEEEEecCCeEEEEEccCCCc
Confidence            477899999 88999999999999999988 666777763  445565 99998 7899999999999999999999654

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.99  E-value=3  Score=46.63  Aligned_cols=217  Identities=13%  Similarity=0.112  Sum_probs=113.7

Q ss_pred             CeEEEEEeCCCCCEEEEE-ECCC----eEEEEECCCCeEEEEe-ecCCCCCCeEEEEEeeCCCCEEEEEeCC--------
Q 004969          455 RPRQFEYHPSISCLMVFG-TLDG----EIVVVNHENENIVSYI-PSFGAMNSVLGLCWLKKYPSKLIAGSDN--------  520 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasG-s~DG----~I~IWdl~tg~~i~~l-~~~~H~~~V~sl~fsp~d~~~LaSgs~D--------  520 (721)
                      .+..+.++| +++++|.+ +..|    +|+++|+++|+.+... ..    ..-..+.|. ++++.|+....+        
T Consensus       125 ~~~~~~~Sp-dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~----~~~~~~~W~-~d~~~~~y~~~~~~~~~~~~  198 (414)
T PF02897_consen  125 SLGGFSVSP-DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN----PKFSSVSWS-DDGKGFFYTRFDEDQRTSDS  198 (414)
T ss_dssp             EEEEEEETT-TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE----EESEEEEEC-TTSSEEEEEECSTTTSS-CC
T ss_pred             EeeeeeECC-CCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc----cccceEEEe-CCCCEEEEEEeCcccccccC
Confidence            355788999 88888865 3333    5999999999776532 21    112239998 565555444322        


Q ss_pred             ---CeEEEEEcCCCCCcccccccCcceeEeccCC--C-eEEEEEecCCCEEEEEeC---C-CcEEEEECCCC----cEEE
Q 004969          521 ---GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFD--Q-LTSVHVNSMDELFLASGY---S-KNIALYDINSG----RRLQ  586 (721)
Q Consensus       521 ---GtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~--~-V~sv~~sp~~~~lls~g~---D-g~IrlWDl~s~----~~v~  586 (721)
                         ..|..|.+.+....        ....+....  . ...+..++++.+++....   + ..+.+.|+..+    ....
T Consensus       199 ~~~~~v~~~~~gt~~~~--------d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~  270 (414)
T PF02897_consen  199 GYPRQVYRHKLGTPQSE--------DELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPK  270 (414)
T ss_dssp             GCCEEEEEEETTS-GGG---------EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEE
T ss_pred             CCCcEEEEEECCCChHh--------CeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcE
Confidence               23778888775431        122332222  2 467888899988776543   3 45888898875    2233


Q ss_pred             EEccccCCCeEEEEEcCCCCcEEEEEEC---CCcEEEEECCCCCce--eEEEecCCCCeEEEEEecCCCEEEEEe-CCC-
Q 004969          587 VFADMHKEHINVVKFSNHSPSIFATSSF---DQDVKLWDLRQKPIQ--PCYTASSSKGNVMVCFSPDDHYLLGKG-SGT-  659 (721)
Q Consensus       587 ~l~~~h~~~V~sI~fsPdg~~lLaSgs~---DgtIrIWDlrs~~~~--~~~~~~~~~~~vsl~fSpdg~~Lasgs-~Dg-  659 (721)
                      .+.....+....+... .+ .+++....   .+.|.-.++......  ....+.......-..+...+.+|+... .++ 
T Consensus       271 ~l~~~~~~~~~~v~~~-~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~  348 (414)
T PF02897_consen  271 LLSPREDGVEYYVDHH-GD-RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGS  348 (414)
T ss_dssp             EEEESSSS-EEEEEEE-TT-EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTE
T ss_pred             EEeCCCCceEEEEEcc-CC-EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCc
Confidence            3332123333344444 33 44444432   456777787776431  112222222223334445566666544 343 


Q ss_pred             -cEEEEEcC-CCccccc----ccCeEEEEECCCC
Q 004969          660 -SMFVQSLR-GDPFRDF----NMSILAAYTRPSS  687 (721)
Q Consensus       660 -~I~VWDl~-g~~l~~~----~~~V~~v~fsP~~  687 (721)
                       .|+++++. +......    .+.|..+...+.+
T Consensus       349 ~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~  382 (414)
T PF02897_consen  349 SRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDS  382 (414)
T ss_dssp             EEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-
T ss_pred             cEEEEEECCCCcEEeeecCCcceEEeccCCCCCC
Confidence             67889998 6543333    2234444444444

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=95.99  E-value=0.12  Score=61.92  Aligned_cols=144  Identities=10%  Similarity=0.089  Sum_probs=89.1

Q ss_pred             CCCEEEEE-eCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEec-----CCCEEEEEeCCCcEEEEECCCCc
Q 004969          510 YPSKLIAG-SDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNS-----MDELFLASGYSKNIALYDINSGR  583 (721)
Q Consensus       510 d~~~LaSg-s~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp-----~~~~lls~g~Dg~IrlWDl~s~~  583 (721)
                      +.++|+.- .....|.-.|++.|+. +..+.       +....+|..++-..     .....+.|-.+..+..||.|-..
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKV-V~eW~-------~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~  563 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKV-VEEWK-------VHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG  563 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcE-EEEee-------cCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCC
Confidence            33444443 3457788888888764 12111       11112233332211     13456677788899999999532


Q ss_pred             --EEEEE--ccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCC
Q 004969          584 --RLQVF--ADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSG  658 (721)
Q Consensus       584 --~v~~l--~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~D  658 (721)
                        .+..-  ........+|++-..+|  .+|+|+.+|.||+||--. . .....+++-+.++ .+..+.||+|+++.+ +
T Consensus       564 ~k~v~~~~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~g-~-~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~  638 (794)
T PF08553_consen  564 NKLVDSQSKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRLG-K-RAKTALPGLGDPIIGIDVTADGKWILATC-K  638 (794)
T ss_pred             CceeeccccccccCCCceEEEecCCc--eEEEEeCCCcEEeecccc-h-hhhhcCCCCCCCeeEEEecCCCcEEEEee-c
Confidence              33211  11245567888888887  899999999999999533 2 2233445544444 999999999999777 5


Q ss_pred             CcEEEEEc
Q 004969          659 TSMFVQSL  666 (721)
Q Consensus       659 g~I~VWDl  666 (721)
                      ..+.+++.
T Consensus       639 tyLlLi~t  646 (794)
T PF08553_consen  639 TYLLLIDT  646 (794)
T ss_pred             ceEEEEEE
Confidence            66666664

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=95.81  E-value=0.006  Score=75.92  Aligned_cols=77  Identities=19%  Similarity=0.284  Sum_probs=39.2

Q ss_pred             eEeeccccccccc--ccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhcc
Q 004969          128 EVLNLRSSRFRKL--NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRF  205 (721)
Q Consensus       128 ~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (721)
                      ++|+|++|++...  +.++.+.+|.+|+|. .|.++..-.+.|..|++|+.|.+.+|++...  --..+.+|++|++|.+
T Consensus       143 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~-~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L  219 (968)
T PLN00113        143 ETLDLSNNMLSGEIPNDIGSFSSLKVLDLG-GNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ--IPRELGQMKSLKWIYL  219 (968)
T ss_pred             CEEECcCCcccccCChHHhcCCCCCEEECc-cCcccccCChhhhhCcCCCeeeccCCCCcCc--CChHHcCcCCccEEEC
Confidence            4455555555321  224555566666666 4444444444555666666666666554321  1134555566666655


Q ss_pred             ce
Q 004969          206 QN  207 (721)
Q Consensus       206 ~~  207 (721)
                      ..
T Consensus       220 ~~  221 (968)
T PLN00113        220 GY  221 (968)
T ss_pred             cC
Confidence            44

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=95.70  E-value=0.41  Score=55.12  Aligned_cols=158  Identities=11%  Similarity=0.046  Sum_probs=94.9

Q ss_pred             EEEeCCCCCEEEEEECCC------------------eEEEEECCCCeEEEEeecCCCCCC----eEEEEEe---eCCCC-
Q 004969          459 FEYHPSISCLMVFGTLDG------------------EIVVVNHENENIVSYIPSFGAMNS----VLGLCWL---KKYPS-  512 (721)
Q Consensus       459 lafsP~dg~~LasGs~DG------------------~I~IWdl~tg~~i~~l~~~~H~~~----V~sl~fs---p~d~~-  512 (721)
                      .++.+ .+.+++.++.++                  .|.-+|..+|+.+-.++...|...    .......   ..++. 
T Consensus       222 pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~  300 (488)
T cd00216         222 PTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKP  300 (488)
T ss_pred             eeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCe
Confidence            34454 456777777665                  799999999999888764333110    0000111   01232 


Q ss_pred             --EEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEE------------------eCCC
Q 004969          513 --KLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLAS------------------GYSK  572 (721)
Q Consensus       513 --~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~------------------g~Dg  572 (721)
                        .++.++.+|.+...|..+++........            ...++..|  +.++++                  ..+|
T Consensus       301 ~~~V~~g~~~G~l~ald~~tG~~~W~~~~~------------~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G  366 (488)
T cd00216         301 VPAIVHAPKNGFFYVLDRTTGKLISARPEV------------EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKG  366 (488)
T ss_pred             eEEEEEECCCceEEEEECCCCcEeeEeEee------------ccccccCC--ceEEEccccccccCcccccCCCCCCCce
Confidence              6788889999999999998764332111            01112212  223322                  2367


Q ss_pred             cEEEEECCCCcEEEEEccc-cC------CCe--EEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEe
Q 004969          573 NIALYDINSGRRLQVFADM-HK------EHI--NVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTA  634 (721)
Q Consensus       573 ~IrlWDl~s~~~v~~l~~~-h~------~~V--~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~  634 (721)
                      .+.-.|+.+|+.+.+.... +.      ...  ..+..  .+ ..++.++.||.++.+|..+++..-.+.+
T Consensus       367 ~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g-~~v~~g~~dG~l~ald~~tG~~lW~~~~  434 (488)
T cd00216         367 GLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AG-NLVFAGAADGYFRAFDATTGKELWKFRT  434 (488)
T ss_pred             EEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cC-CeEEEECCCCeEEEEECCCCceeeEEEC
Confidence            8999999999998887631 00      111  12222  33 4788888999999999999976444444

The alignment model contains an 8-bladed beta-propeller.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.69  E-value=1.1  Score=47.32  Aligned_cols=168  Identities=12%  Similarity=0.149  Sum_probs=110.9

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI  535 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~  535 (721)
                      +.++.|+| +.+.|++....+.-.||=...|+.+.+++..+-. ..-++.|. .++.++++--.++.+.++.+.......
T Consensus        88 vS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~-DpE~Ieyi-g~n~fvi~dER~~~l~~~~vd~~t~~~  164 (316)
T COG3204          88 VSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS-DPETIEYI-GGNQFVIVDERDRALYLFTVDADTTVI  164 (316)
T ss_pred             ccceeeCC-CcceEEEecCCCceEEEEecCCceEEEecccccC-ChhHeEEe-cCCEEEEEehhcceEEEEEEcCCccEE
Confidence            88999999 6666666666777777777779999999876633 34467776 566777777788999998887654322


Q ss_pred             cccccCcceeEecc-CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcE---EEEEcc------ccCCCeEEEEEcCCC
Q 004969          536 RGMHYGAGTVTFDE-FDQLTSVHVNSMDELFLASGYSKNIALYDINSGRR---LQVFAD------MHKEHINVVKFSNHS  605 (721)
Q Consensus       536 ~~~~~~~~~~~~~~-~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~---v~~l~~------~h~~~V~sI~fsPdg  605 (721)
                      .........-...+ ......++|.|.+..++.+-.-.-+.||....+..   +.....      -.-..|+++.|++..
T Consensus       165 ~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~  244 (316)
T COG3204         165 SAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAIT  244 (316)
T ss_pred             eccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCC
Confidence            11110000111112 34578999999999999888766667766553321   111111      012357788999877


Q ss_pred             CcEEEEEECCCcEEEEECCCC
Q 004969          606 PSIFATSSFDQDVKLWDLRQK  626 (721)
Q Consensus       606 ~~lLaSgs~DgtIrIWDlrs~  626 (721)
                      +.+++-+..++.+.-.|....
T Consensus       245 ~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         245 NSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             CcEEEEecCCceEEEEecCCC
Confidence            678888888888888887764

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=95.64  E-value=0.85  Score=52.52  Aligned_cols=199  Identities=11%  Similarity=0.126  Sum_probs=113.5

Q ss_pred             CCEEEEEECCCeEEEEECCCCeEEEEeecCCC----CCCe--EEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccc
Q 004969          466 SCLMVFGTLDGEIVVVNHENENIVSYIPSFGA----MNSV--LGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMH  539 (721)
Q Consensus       466 g~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H----~~~V--~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~  539 (721)
                      +..++.++.+|.|.-.|..+|+.+..+.....    ...+  ..+..  .++..++.++.+|.|.-+|.++++.......
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~--~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~  138 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY--WDPRKVFFGTFDGRLVALDAETGKQVWKFGN  138 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE--ccCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence            45677788899999999999998876653211    0011  11121  1236888889999999999999876433221


Q ss_pred             cCcceeEeccCCCeEEEEEecCCCEEEEEe---------CCCcEEEEECCCCcEEEEEccccCC----------------
Q 004969          540 YGAGTVTFDEFDQLTSVHVNSMDELFLASG---------YSKNIALYDINSGRRLQVFADMHKE----------------  594 (721)
Q Consensus       540 ~~~~~~~~~~~~~V~sv~~sp~~~~lls~g---------~Dg~IrlWDl~s~~~v~~l~~~h~~----------------  594 (721)
                      .......+...   .+..+  .++.+++++         .++.+..+|..+|+.+..+......                
T Consensus       139 ~~~~~~~~~i~---ssP~v--~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~  213 (488)
T cd00216         139 NDQVPPGYTMT---GAPTI--VKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGP  213 (488)
T ss_pred             CCCcCcceEec---CCCEE--ECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecC
Confidence            11100000000   11111  134555553         3678999999999999887631110                


Q ss_pred             ---Ce-EEEEEcCCCCcEEEEEECCC------------------cEEEEECCCCCceeEEEecCCCCe-----EEEEEe-
Q 004969          595 ---HI-NVVKFSNHSPSIFATSSFDQ------------------DVKLWDLRQKPIQPCYTASSSKGN-----VMVCFS-  646 (721)
Q Consensus       595 ---~V-~sI~fsPdg~~lLaSgs~Dg------------------tIrIWDlrs~~~~~~~~~~~~~~~-----vsl~fS-  646 (721)
                         .+ ...++.+.+ .+++.++.++                  .|.-+|..+++..-.+....+...     ...... 
T Consensus       214 ~g~~vw~~pa~d~~~-g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~  292 (488)
T cd00216         214 GGGTSWASPTYDPKT-NLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLAD  292 (488)
T ss_pred             CCCCccCCeeEeCCC-CEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEe
Confidence               01 123444444 4666676554                  688899999876544433322111     011111 


Q ss_pred             ---cCCC---EEEEEeCCCcEEEEEcC-CCccc
Q 004969          647 ---PDDH---YLLGKGSGTSMFVQSLR-GDPFR  672 (721)
Q Consensus       647 ---pdg~---~Lasgs~Dg~I~VWDl~-g~~l~  672 (721)
                         -+|.   .+++++.+|.++..|.+ |+.+-
T Consensus       293 ~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W  325 (488)
T cd00216         293 IKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLIS  325 (488)
T ss_pred             ccccCCCeeEEEEEECCCceEEEEECCCCcEee
Confidence               2343   67778889999988876 55443

The alignment model contains an 8-bladed beta-propeller.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.58  E-value=0.47  Score=53.36  Aligned_cols=139  Identities=16%  Similarity=0.189  Sum_probs=86.2

Q ss_pred             EEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCC-------CEEEEEeCCCcEEEEECCC-Cc-E
Q 004969          514 LIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD-------ELFLASGYSKNIALYDINS-GR-R  584 (721)
Q Consensus       514 LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~-------~~lls~g~Dg~IrlWDl~s-~~-~  584 (721)
                      +.++..-..++-.|++.|+.          +-.+.....|.-+.+.|+.       ..-+.|-++..|.-||+|- +. .
T Consensus       349 l~~~~~~~~l~klDIE~GKI----------VeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~k  418 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKI----------VEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNK  418 (644)
T ss_pred             eeCCCCcCcceeeeccccee----------eeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcce
Confidence            34445555677778887654          2223333335555555543       2234566788999999984 33 1


Q ss_pred             EEEEcc---ccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCc
Q 004969          585 LQVFAD---MHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTS  660 (721)
Q Consensus       585 v~~l~~---~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~  660 (721)
                      +..-++   .......|.+-..+|  ++|+||.+|.||+||- .+.. ....+++-..++ -+..+.+|.+|++.+ +..
T Consensus       419 l~~~q~kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~-AKTAlPgLG~~I~hVdvtadGKwil~Tc-~ty  493 (644)
T KOG2395|consen  419 LAVVQSKQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRR-AKTALPGLGDAIKHVDVTADGKWILATC-KTY  493 (644)
T ss_pred             eeeeeccccccccccceeeecCCc--eEEEeecCCcEEeehh-hhhh-hhhcccccCCceeeEEeeccCcEEEEec-ccE
Confidence            111111   123445666666666  8999999999999997 3322 223455655666 788899999999766 666


Q ss_pred             EEEEEcC
Q 004969          661 MFVQSLR  667 (721)
Q Consensus       661 I~VWDl~  667 (721)
                      +-+-++.
T Consensus       494 LlLi~t~  500 (644)
T KOG2395|consen  494 LLLIDTL  500 (644)
T ss_pred             EEEEEEe
Confidence            6666654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=95.55  E-value=0.0099  Score=62.25  Aligned_cols=96  Identities=23%  Similarity=0.307  Sum_probs=74.8

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhcc
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM  179 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (721)
                      |-|..+||.-|+.  .-+.+=-.--..-++|||+.|+|+......++.+|.-|.|+ .|-++++ ++--.-+-|+++|-+
T Consensus       284 q~LtelDLS~N~I--~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS-~N~Ls~~-~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  284 QELTELDLSGNLI--TQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLS-GNLLAEC-VGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhhccccccch--hhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecc-cchhHhh-hhhHhhhcCEeeeeh
Confidence            4566677766432  22333333344568899999999999999999999999999 6777776 356677899999999


Q ss_pred             ccccchhhhHHHHHhhcCCcchhh
Q 004969          180 CETRVGNLWTTIAALSKLPSLAEL  203 (721)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~  203 (721)
                      .+|.|..|    ..|.||=||+-|
T Consensus       360 a~N~iE~L----SGL~KLYSLvnL  379 (490)
T KOG1259|consen  360 AQNKIETL----SGLRKLYSLVNL  379 (490)
T ss_pred             hhhhHhhh----hhhHhhhhheec
Confidence            99988777    999999999888

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.52  E-value=0.38  Score=54.55  Aligned_cols=141  Identities=12%  Similarity=0.086  Sum_probs=76.4

Q ss_pred             CCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 004969          499 NSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYD  578 (721)
Q Consensus       499 ~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWD  578 (721)
                      .....+.++ |+++.++. +.||...|+.....+.           .   ..+.-...+|.+ .+.+++-...++|.++.
T Consensus        33 ~~p~~ls~n-pngr~v~V-~g~geY~iyt~~~~r~-----------k---~~G~g~~~vw~~-~n~yAv~~~~~~I~I~k   95 (443)
T PF04053_consen   33 IYPQSLSHN-PNGRFVLV-CGDGEYEIYTALAWRN-----------K---AFGSGLSFVWSS-RNRYAVLESSSTIKIYK   95 (443)
T ss_dssp             S--SEEEE--TTSSEEEE-EETTEEEEEETTTTEE-----------E---EEEE-SEEEE-T-SSEEEEE-TTS-EEEEE
T ss_pred             cCCeeEEEC-CCCCEEEE-EcCCEEEEEEccCCcc-----------c---ccCceeEEEEec-CccEEEEECCCeEEEEE
Confidence            346788888 67777777 5566777777333111           1   112346778877 56677777788899973


Q ss_pred             CCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCC
Q 004969          579 INSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG  658 (721)
Q Consensus       579 l~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D  658 (721)
                      --+.+....+.  ....+..|-.   | .+|...+.+ .|.+||+.+++.  +..+... +.-.+.|+++|.+++..+ +
T Consensus        96 n~~~~~~k~i~--~~~~~~~If~---G-~LL~~~~~~-~i~~yDw~~~~~--i~~i~v~-~vk~V~Ws~~g~~val~t-~  164 (443)
T PF04053_consen   96 NFKNEVVKSIK--LPFSVEKIFG---G-NLLGVKSSD-FICFYDWETGKL--IRRIDVS-AVKYVIWSDDGELVALVT-K  164 (443)
T ss_dssp             TTEE-TT-------SS-EEEEE----S-SSEEEEETT-EEEEE-TTT--E--EEEESS--E-EEEEE-TTSSEEEEE--S
T ss_pred             cCccccceEEc--CCcccceEEc---C-cEEEEECCC-CEEEEEhhHcce--eeEEecC-CCcEEEEECCCCEEEEEe-C
Confidence            33333333444  2223444433   6 566666654 899999999854  4444432 223799999999999887 5


Q ss_pred             CcEEEEEcC
Q 004969          659 TSMFVQSLR  667 (721)
Q Consensus       659 g~I~VWDl~  667 (721)
                      ..++|++..
T Consensus       165 ~~i~il~~~  173 (443)
T PF04053_consen  165 DSIYILKYN  173 (443)
T ss_dssp             -SEEEEEE-
T ss_pred             CeEEEEEec
Confidence            578887765

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PHA02713 hypothetical protein; Provisional

Probab=95.42  E-value=0.34  Score=56.69  Aligned_cols=186  Identities=11%  Similarity=0.123  Sum_probs=96.9

Q ss_pred             CCCEEEEEECC------CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCC-----eEEEEEcCCCCC
Q 004969          465 ISCLMVFGTLD------GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG-----SLKLYDIRHMPP  533 (721)
Q Consensus       465 dg~~LasGs~D------G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DG-----tVrIWDi~~~~~  533 (721)
                      ++.+++.|+.+      ..+..||..+..... ++.......-.+++.  .++...+.||.++     ++..||..+...
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~-~~~m~~~R~~~~~~~--~~g~IYviGG~~~~~~~~sve~Ydp~~~~W  379 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVE-LPPMIKNRCRFSLAV--IDDTIYAIGGQNGTNVERTIECYTMGDDKW  379 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEee-CCCCcchhhceeEEE--ECCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence            56778888754      357788887765432 211111111123332  3566777777654     478888876432


Q ss_pred             cccccccCcceeEeccC-CCeEEEEEecCCCEEEEEeCC-----------------------CcEEEEECCCCcEEE--E
Q 004969          534 SIRGMHYGAGTVTFDEF-DQLTSVHVNSMDELFLASGYS-----------------------KNIALYDINSGRRLQ--V  587 (721)
Q Consensus       534 ~~~~~~~~~~~~~~~~~-~~V~sv~~sp~~~~lls~g~D-----------------------g~IrlWDl~s~~~v~--~  587 (721)
                      ..  ..      .+... .....+..  ++...+.||.+                       ..+..||..+.+-..  .
T Consensus       380 ~~--~~------~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~  449 (557)
T PHA02713        380 KM--LP------DMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPN  449 (557)
T ss_pred             EE--CC------CCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCC
Confidence            11  10      00000 01112222  45566666644                       247788888765432  2


Q ss_pred             EccccCCCeEEEEEcCCCCcEEEEEECC------CcEEEEECCC-CCceeEEEecCCCCeEEEEEecCCCEEEEEeCCC-
Q 004969          588 FADMHKEHINVVKFSNHSPSIFATSSFD------QDVKLWDLRQ-KPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGT-  659 (721)
Q Consensus       588 l~~~h~~~V~sI~fsPdg~~lLaSgs~D------gtIrIWDlrs-~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg-  659 (721)
                      +.. .......+.+  +| .+.+.|+.+      ..+..||..+ .+...+..++.......++. -+|...++||.+| 
T Consensus       450 m~~-~r~~~~~~~~--~~-~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~-~~~~iyv~Gg~~~~  524 (557)
T PHA02713        450 FWT-GTIRPGVVSH--KD-DIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL-HDNTIMMLHCYESY  524 (557)
T ss_pred             CCc-ccccCcEEEE--CC-EEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE-ECCEEEEEeeecce
Confidence            211 1111112222  34 677777764      2467899998 66654444443322222222 2778888888888 


Q ss_pred             -cEEEEEcCC
Q 004969          660 -SMFVQSLRG  668 (721)
Q Consensus       660 -~I~VWDl~g  668 (721)
                       .+..||...
T Consensus       525 ~~~e~yd~~~  534 (557)
T PHA02713        525 MLQDTFNVYT  534 (557)
T ss_pred             eehhhcCccc
Confidence             566677653

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.33  E-value=0.011  Score=44.51  Aligned_cols=36  Identities=22%  Similarity=0.450  Sum_probs=32.2

Q ss_pred             eEeeccccccccccc-ccccceeeEEeccccccccccc
Q 004969          128 EVLNLRSSRFRKLNM-IGEFKRIHTLNLDYSTSLTSFK  164 (721)
Q Consensus       128 ~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~  164 (721)
                      ++|+|++|+|.+|.- ++.+++|.+|+|+ .|.|++|+
T Consensus         4 ~~L~l~~N~i~~l~~~l~~l~~L~~L~l~-~N~i~~i~   40 (44)
T PF12799_consen    4 EELDLSNNQITDLPPELSNLPNLETLNLS-NNPISDIS   40 (44)
T ss_dssp             SEEEETSSS-SSHGGHGTTCTTSSEEEET-SSCCSBEG
T ss_pred             eEEEccCCCCcccCchHhCCCCCCEEEec-CCCCCCCc
Confidence            679999999999999 9999999999999 77999774

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.28  E-value=0.0077  Score=59.95  Aligned_cols=103  Identities=26%  Similarity=0.388  Sum_probs=77.2

Q ss_pred             ceEeeccCCchhhHHHHHhhcCCccceEeecccccccccc-ccc-ccceeeEEecccccccccccc-cccccccccchhc
Q 004969          102 LRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN-MIG-EFKRIHTLNLDYSTSLTSFKE-DCFSCMPNLICLS  178 (721)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~  178 (721)
                      .-.+||.|+-.++  +.+|.+. -.=+.|.|.+|+|-.++ .++ -|+.|++|.|. +|||..|.+ +=-..+|+|+.|+
T Consensus        44 ~d~iDLtdNdl~~--l~~lp~l-~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt-nNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   44 FDAIDLTDNDLRK--LDNLPHL-PRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT-NNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             cceecccccchhh--cccCCCc-cccceEEecCCcceeeccchhhhccccceEEec-CcchhhhhhcchhccCCccceee
Confidence            4578888855444  3444432 23345999999998775 334 45679999999 999999988 8888999999999


Q ss_pred             cccccchhhhH-HHHHhhcCCcchhhcccee
Q 004969          179 MCETRVGNLWT-TIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       179 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  208 (721)
                      +=+|.|...=- -.=.|-|||+|+-|.||+=
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            99999986500 0124789999999999873

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=95.28  E-value=0.0087  Score=67.70  Aligned_cols=165  Identities=27%  Similarity=0.371  Sum_probs=104.5

Q ss_pred             CCCchhhhhhhhhhcccccCCcceEEEeeccccCCCchhHHHHHh------------hc-----CCCcceeeEeecCCcc
Q 004969           22 LPNPAILSGFFKADVRKSQNEPCTLEIILEYLKDIDFQPLLEVCM------------QI-----GATEIEAVDVRSGTSC   84 (721)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~-----~~~~~~~~~~~~~~~~   84 (721)
                      -|+-+-|.+|+--.+       .++.+--+.|.++||.-..++..            +|     +++.++..|+.|.--.
T Consensus        66 a~~~~~l~g~lp~~t-------~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~  138 (873)
T KOG4194|consen   66 AIDKSRLKGFLPSQT-------QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLIS  138 (873)
T ss_pred             cccccccCCcCccce-------eeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccc
Confidence            344444555554332       35777777888888875554421            11     3455777777664444


Q ss_pred             ccchHH--HHHHHHHhcccceEeeccCCchhhHHHH-HhhcCCccceEeeccccccccccc--ccccceeeEEecccccc
Q 004969           85 MLTGEF--ALSLMHAIDQKLRVVDLHDSSFGKDFIR-NLSQRGLMCEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTS  159 (721)
Q Consensus        85 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~  159 (721)
                      ..+.|-  |+..       ||++||.-|..  ..++ .=+-+|..=+-|||++|+|-.||.  +..|..|-||.|. .|+
T Consensus       139 sv~se~L~~l~a-------lrslDLSrN~i--s~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLs-rNr  208 (873)
T KOG4194|consen  139 SVTSEELSALPA-------LRSLDLSRNLI--SEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLS-RNR  208 (873)
T ss_pred             cccHHHHHhHhh-------hhhhhhhhchh--hcccCCCCCCCCCceEEeeccccccccccccccccchheeeecc-cCc
Confidence            444442  2222       45666654321  1222 123456777888888888888764  4466778888888 888


Q ss_pred             cccccccccccccccchhccccccchhh-hHHHHHhhcCCcchhhccc
Q 004969          160 LTSFKEDCFSCMPNLICLSMCETRVGNL-WTTIAALSKLPSLAELRFQ  206 (721)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  206 (721)
                      ||-++---|+.+|+|+.|.+.-|+|.-. |-|..   -||||+-|..|
T Consensus       209 ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFq---gL~Sl~nlklq  253 (873)
T KOG4194|consen  209 ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQ---GLPSLQNLKLQ  253 (873)
T ss_pred             ccccCHHHhhhcchhhhhhccccceeeehhhhhc---Cchhhhhhhhh
Confidence            8888888888888888888888888755 65554   45666666544

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=95.22  E-value=0.0058  Score=66.96  Aligned_cols=103  Identities=22%  Similarity=0.331  Sum_probs=86.1

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccc----cccccccceeeEEecccccccccccc-ccccccccc
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRK----LNMIGEFKRIHTLNLDYSTSLTSFKE-DCFSCMPNL  174 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~  174 (721)
                      .|||+|-|++..-+--+....++.=..|.-|||+.|=|.+    +.++-.|++|+.|||+ +|.+.++.+ .--...+.|
T Consensus       121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls-~Nrl~~~~~s~~~~~l~~l  199 (505)
T KOG3207|consen  121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLS-SNRLSNFISSNTTLLLSHL  199 (505)
T ss_pred             HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccc-cccccCCccccchhhhhhh
Confidence            4899999999887777777888888999999999887766    4567889999999999 999988766 444578999


Q ss_pred             chhccccccchhhhHHHHHhh-cCCcchhhcc
Q 004969          175 ICLSMCETRVGNLWTTIAALS-KLPSLAELRF  205 (721)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  205 (721)
                      +.|++..+++.  |..+.-+. -.|+|.+|-.
T Consensus       200 K~L~l~~CGls--~k~V~~~~~~fPsl~~L~L  229 (505)
T KOG3207|consen  200 KQLVLNSCGLS--WKDVQWILLTFPSLEVLYL  229 (505)
T ss_pred             heEEeccCCCC--HHHHHHHHHhCCcHHHhhh
Confidence            99999999999  98887544 4699988854

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.91  E-value=0.11  Score=62.33  Aligned_cols=99  Identities=18%  Similarity=0.268  Sum_probs=71.9

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCcE-EEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCC--
Q 004969          561 MDELFLASGYSKNIALYDINSGRR-LQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSS--  637 (721)
Q Consensus       561 ~~~~lls~g~Dg~IrlWDl~s~~~-v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~--  637 (721)
                      .+..+++|++.|.+-..|++..-. ...=. .-+++|++++|+.+| .+++.|-.+|.|.+||+..++........++  
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne-~v~~~Vtsvafn~dg-~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~  175 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNE-RVQGPVTSVAFNQDG-SLLLAGLGDGHVTVWDMHRAKILKVITEHGAPV  175 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCC-ccCCcceeeEecCCC-ceeccccCCCcEEEEEccCCcceeeeeecCCcc
Confidence            456678888889999999875311 11111 146799999999999 8999999999999999998766555544333  


Q ss_pred             CCeEEEEEecCCCEEEEEeCCCcE
Q 004969          638 KGNVMVCFSPDDHYLLGKGSGTSM  661 (721)
Q Consensus       638 ~~~vsl~fSpdg~~Lasgs~Dg~I  661 (721)
                      .+.+.+.+..++..++++...|.+
T Consensus       176 t~vi~v~~t~~nS~llt~D~~Gsf  199 (1206)
T KOG2079|consen  176 TGVIFVGRTSQNSKLLTSDTGGSF  199 (1206)
T ss_pred             ceEEEEEEeCCCcEEEEccCCCce
Confidence            333456777777888888877763

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=94.83  E-value=7.3  Score=47.33  Aligned_cols=203  Identities=13%  Similarity=0.139  Sum_probs=115.7

Q ss_pred             CCEEEEEECCCeEEEEECCCCeEEEEeecCCCCC------CeEEEEEee---------------CCCCEEEEEeCCCeEE
Q 004969          466 SCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMN------SVLGLCWLK---------------KYPSKLIAGSDNGSLK  524 (721)
Q Consensus       466 g~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~------~V~sl~fsp---------------~d~~~LaSgs~DGtVr  524 (721)
                      +..+..++.++.|.-.|..+|+.+-.+.......      ....+.+..               ..+..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            4667778888999999999999888776422111      123344431               1234788899999999


Q ss_pred             EEEcCCCCCcccccccCcceeEecc----CC----CeEEE-EEecCCCEEEEEeC----------CCcEEEEECCCCcEE
Q 004969          525 LYDIRHMPPSIRGMHYGAGTVTFDE----FD----QLTSV-HVNSMDELFLASGY----------SKNIALYDINSGRRL  585 (721)
Q Consensus       525 IWDi~~~~~~~~~~~~~~~~~~~~~----~~----~V~sv-~~sp~~~~lls~g~----------Dg~IrlWDl~s~~~v  585 (721)
                      -.|.++++.....-.  .+.+.+..    ..    .+++- .+  .++.+++++.          +|.|+-+|.++|+.+
T Consensus       274 ALDA~TGk~~W~fg~--~G~vdl~~~~g~~~~g~~~~ts~P~V--~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~  349 (764)
T TIGR03074       274 ALDADTGKLCEDFGN--NGTVDLTAGMGTTPPGYYYPTSPPLV--AGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV  349 (764)
T ss_pred             EEECCCCCEEEEecC--CCceeeecccCcCCCcccccccCCEE--ECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence            999999876432111  01111100    00    00110 11  2456776643          588999999999999


Q ss_pred             EEEcccc--------CCC--------e-EEEEEcCCCCcEEEEEE------------------CCCcEEEEECCCCCcee
Q 004969          586 QVFADMH--------KEH--------I-NVVKFSNHSPSIFATSS------------------FDQDVKLWDLRQKPIQP  630 (721)
Q Consensus       586 ~~l~~~h--------~~~--------V-~sI~fsPdg~~lLaSgs------------------~DgtIrIWDlrs~~~~~  630 (721)
                      ..+....        .+.        + ...++.|.. .++..+.                  ..++|.-.|.++++.+-
T Consensus       350 W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~-glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W  428 (764)
T TIGR03074       350 WAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKL-GLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERW  428 (764)
T ss_pred             eEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCC-CeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEE
Confidence            8875211        000        1 223444443 2332221                  12456667777776654


Q ss_pred             EEEecCCCC--------eEEEEEec-CCC---EEEEEeCCCcEEEEEcC-CCcccc
Q 004969          631 CYTASSSKG--------NVMVCFSP-DDH---YLLGKGSGTSMFVQSLR-GDPFRD  673 (721)
Q Consensus       631 ~~~~~~~~~--------~vsl~fSp-dg~---~Lasgs~Dg~I~VWDl~-g~~l~~  673 (721)
                      .+....|..        .+-+.+.. +|+   .++.++.+|.+++.|-+ |+++..
T Consensus       429 ~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~  484 (764)
T TIGR03074       429 VFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP  484 (764)
T ss_pred             EecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence            444433321        22122333 563   78889999999999987 665543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PHA03098 kelch-like protein; Provisional

Probab=94.73  E-value=1.3  Score=51.46  Aligned_cols=190  Identities=8%  Similarity=0.053  Sum_probs=92.1

Q ss_pred             CCCEEEEEECCC------eEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC-----CeEEEEEcCCCCC
Q 004969          465 ISCLMVFGTLDG------EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN-----GSLKLYDIRHMPP  533 (721)
Q Consensus       465 dg~~LasGs~DG------~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D-----GtVrIWDi~~~~~  533 (721)
                      ++.+++.|+.++      .+..||..+++....-......... +++.  .++..++.||.+     ..+..||..+.+.
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W  370 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKW  370 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence            457777777543      5778888876653321111111112 2232  256677777765     3567788776443


Q ss_pred             cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC------CcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCc
Q 004969          534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS------KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPS  607 (721)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D------g~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~  607 (721)
                      ..  ..      .......-.+++. -++..++.||.+      ..+..||..+++-...-.-.....-.++.. .++ .
T Consensus       371 ~~--~~------~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~-~  439 (534)
T PHA03098        371 RE--EP------PLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY-HDG-K  439 (534)
T ss_pred             ee--CC------CcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEE-ECC-E
Confidence            11  10      0001111111222 245556666631      458899988765432211000111112222 234 6


Q ss_pred             EEEEEECC--------CcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEEcCCC
Q 004969          608 IFATSSFD--------QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG-----TSMFVQSLRGD  669 (721)
Q Consensus       608 lLaSgs~D--------gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D-----g~I~VWDl~g~  669 (721)
                      +++.|+.+        ..+.+||..+.+...+..........+++. .++..++.||.+     +.+.+||...+
T Consensus       440 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        440 IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE-ECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence            77777653        238899998876544322221111112222 266777777654     35677777643

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=94.65  E-value=9.7  Score=42.88  Aligned_cols=185  Identities=12%  Similarity=0.065  Sum_probs=90.0

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCC-----eEEEEEeeCCCCEEEEEeCCCeEEEE-Ec
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNS-----VLGLCWLKKYPSKLIAGSDNGSLKLY-DI  528 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~-----V~sl~fsp~d~~~LaSgs~DGtVrIW-Di  528 (721)
                      ++.++.|+. +.. |++-..||.++++|+. |+....+........     +....+. .+|-.+++  .++.+.+. +.
T Consensus        82 ~iv~~~wt~-~e~-LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~-~~GivvLt--~~~~~~~v~n~  155 (410)
T PF04841_consen   82 RIVGMGWTD-DEE-LVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFY-KNGIVVLT--GNNRFYVVNNI  155 (410)
T ss_pred             CEEEEEECC-CCe-EEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccC-CCCEEEEC--CCCeEEEEeCc
Confidence            488999988 544 5566789999999987 443111111111112     2222221 23323333  23333332 22


Q ss_pred             CCCCCcccccccCcceeE-eccCCCeEE-EEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCC
Q 004969          529 RHMPPSIRGMHYGAGTVT-FDEFDQLTS-VHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSP  606 (721)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~-~~~~~~V~s-v~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~  606 (721)
                      .... ............. ......... ..++.+....+....++.+.+.+-...+.   +.  ..+++..++.||+| 
T Consensus       156 ~~~~-~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~--~~~~i~~iavSpng-  228 (410)
T PF04841_consen  156 DEPV-KLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID--SDGPIIKIAVSPNG-  228 (410)
T ss_pred             cccc-hhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc--CCCCeEEEEECCCC-
Confidence            2210 1111100000000 000001111 22333444455555556666444332211   21  34689999999999 


Q ss_pred             cEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEE
Q 004969          607 SIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYL  652 (721)
Q Consensus       607 ~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~L  652 (721)
                      +.+|.-..+|.+.+....-.+....+.......+..+.|.-+...+
T Consensus       229 ~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~  274 (410)
T PF04841_consen  229 KFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVV  274 (410)
T ss_pred             CEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEE
Confidence            7888888999998887665544333333333444467777654433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=94.58  E-value=0.015  Score=54.73  Aligned_cols=84  Identities=27%  Similarity=0.369  Sum_probs=66.0

Q ss_pred             hHHHHHhhcCCccceEeeccccccccc--ccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHH
Q 004969          114 KDFIRNLSQRGLMCEVLNLRSSRFRKL--NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTI  191 (721)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (721)
                      -|.+++|+. |.--..++|+.|.|+|+  .+.-.|+-+.||||. +|.|.-+++. |..||-|+.|.+..|.+.-+=.-+
T Consensus        43 ~davy~l~~-~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~-~neisdvPeE-~Aam~aLr~lNl~~N~l~~~p~vi  119 (177)
T KOG4579|consen   43 ADAVYMLSK-GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLA-NNEISDVPEE-LAAMPALRSLNLRFNPLNAEPRVI  119 (177)
T ss_pred             HHHHHHHhC-CceEEEEecccchhhhCCHHHhhccchhhhhhcc-hhhhhhchHH-HhhhHHhhhcccccCccccchHHH
Confidence            345555553 33334467777888754  234578889999999 9999999999 999999999999999999888888


Q ss_pred             HHhhcCCcc
Q 004969          192 AALSKLPSL  200 (721)
Q Consensus       192 ~~~~~~~~~  200 (721)
                      +.|-||-.|
T Consensus       120 ~~L~~l~~L  128 (177)
T KOG4579|consen  120 APLIKLDML  128 (177)
T ss_pred             HHHHhHHHh
Confidence            887777766

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=94.42  E-value=0.023  Score=70.77  Aligned_cols=101  Identities=19%  Similarity=0.210  Sum_probs=52.5

Q ss_pred             cceEeeccCCchhhH---HHHHhhcCCccceEeecccccccc-c-ccccccceeeEEecccccccccccccccccccccc
Q 004969          101 KLRVVDLHDSSFGKD---FIRNLSQRGLMCEVLNLRSSRFRK-L-NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLI  175 (721)
Q Consensus       101 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  175 (721)
                      +||+++|.++.+...   .+.+|.    .-++|+|++|.+.. + .-++.+.+|++|+|. +|.++..-..-|..|++|+
T Consensus       141 ~L~~L~Ls~n~~~~~~p~~~~~l~----~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~-~n~l~~~~p~~l~~l~~L~  215 (968)
T PLN00113        141 NLETLDLSNNMLSGEIPNDIGSFS----SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLA-SNQLVGQIPRELGQMKSLK  215 (968)
T ss_pred             CCCEEECcCCcccccCChHHhcCC----CCCEEECccCcccccCChhhhhCcCCCeeecc-CCCCcCcCChHHcCcCCcc
Confidence            455666665554321   122221    34567777666542 1 234556666666666 4455443334455666666


Q ss_pred             hhccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969          176 CLSMCETRVGNLWTTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (721)
                      .|.+.+|++...  --.++.+|++|++|.+..|
T Consensus       216 ~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n  246 (968)
T PLN00113        216 WIYLGYNNLSGE--IPYEIGGLTSLNHLDLVYN  246 (968)
T ss_pred             EEECcCCccCCc--CChhHhcCCCCCEEECcCc
Confidence            666666655421  1234555566666655544

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.34  E-value=0.97  Score=51.73  Aligned_cols=119  Identities=9%  Similarity=0.064  Sum_probs=74.5

Q ss_pred             ccCCCeEEEEEecC----CCEEEEEeCCCcEEEEECC-----CCcEEEEEcc----ccCCCeEEEEEcCCCCcEEEEEEC
Q 004969          548 DEFDQLTSVHVNSM----DELFLASGYSKNIALYDIN-----SGRRLQVFAD----MHKEHINVVKFSNHSPSIFATSSF  614 (721)
Q Consensus       548 ~~~~~V~sv~~sp~----~~~lls~g~Dg~IrlWDl~-----s~~~v~~l~~----~h~~~V~sI~fsPdg~~lLaSgs~  614 (721)
                      .....|..+.|.|.    -..+++.-..+.|.+|-+.     +++.+..-..    ...--.....|+|.. .++++-..
T Consensus        54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~-~iL~VLT~  132 (671)
T PF15390_consen   54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKK-AILTVLTA  132 (671)
T ss_pred             eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCC-ceEEEEec
Confidence            34466899999886    3578888888999999886     2233222111    111122356799998 56665555


Q ss_pred             CCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCC-CcEEEEEcC
Q 004969          615 DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG-TSMFVQSLR  667 (721)
Q Consensus       615 DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D-g~I~VWDl~  667 (721)
                      ...-.+++++.........+.++.-+.+.+|.+||+.|+++-.. =.-++||-.
T Consensus       133 ~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  133 RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             CceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            44445677776544333444444344499999999988776433 355899854

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=94.32  E-value=8  Score=45.05  Aligned_cols=195  Identities=11%  Similarity=0.078  Sum_probs=115.3

Q ss_pred             CCEEEEEECCCeEEEEECCCCeEEEEeecCCCCC--Ce-------EEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCccc
Q 004969          466 SCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMN--SV-------LGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIR  536 (721)
Q Consensus       466 g~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~--~V-------~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~  536 (721)
                      +..++.++.++.|+-.|..+|+.+-.+.......  .+       ..++.   .+..++.++.|+.+.-.|..+++....
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av---~~~~v~v~t~dg~l~ALDa~TGk~~W~  145 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL---YDGKVFFGTLDARLVALDAKTGKVVWS  145 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE---ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence            4677778888999999999999887765321111  10       11222   235677888999999999999876433


Q ss_pred             ccccCcceeEeccCCCeEE-EEEecCCCEEEEEeC------CCcEEEEECCCCcEEEEEccccCC---------------
Q 004969          537 GMHYGAGTVTFDEFDQLTS-VHVNSMDELFLASGY------SKNIALYDINSGRRLQVFADMHKE---------------  594 (721)
Q Consensus       537 ~~~~~~~~~~~~~~~~V~s-v~~sp~~~~lls~g~------Dg~IrlWDl~s~~~v~~l~~~h~~---------------  594 (721)
                      .......     ....+.+ -.+  .++.++++..      +|.|.-+|.++|+.+..+......               
T Consensus       146 ~~~~~~~-----~~~~~tssP~v--~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~  218 (527)
T TIGR03075       146 KKNGDYK-----AGYTITAAPLV--VKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEP  218 (527)
T ss_pred             ccccccc-----ccccccCCcEE--ECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccccccccccc
Confidence            2111000     0001111 011  1345565542      689999999999998876531111               


Q ss_pred             ---------------CeE-EEEEcCCCCcEEEEEECC-----C-----------cEEEEECCCCCceeEEEecCCCC---
Q 004969          595 ---------------HIN-VVKFSNHSPSIFATSSFD-----Q-----------DVKLWDLRQKPIQPCYTASSSKG---  639 (721)
Q Consensus       595 ---------------~V~-sI~fsPdg~~lLaSgs~D-----g-----------tIrIWDlrs~~~~~~~~~~~~~~---  639 (721)
                                     .+. .+++.|.. .++..+...     +           +|.--|+++++.+-.++...|..   
T Consensus       219 ~~~tw~~~~~~~gg~~~W~~~s~D~~~-~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~  297 (527)
T TIGR03075       219 GAKTWPGDAWKTGGGATWGTGSYDPET-NLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDY  297 (527)
T ss_pred             ccCCCCCCccccCCCCccCceeEcCCC-CeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccc
Confidence                           111 24566655 344444321     2           56667888887765565544432   


Q ss_pred             -----eEEEEEecCCC---EEEEEeCCCcEEEEEcC-CCcc
Q 004969          640 -----NVMVCFSPDDH---YLLGKGSGTSMFVQSLR-GDPF  671 (721)
Q Consensus       640 -----~vsl~fSpdg~---~Lasgs~Dg~I~VWDl~-g~~l  671 (721)
                           .+-+....+|+   .++.+..+|.+++.|-+ |+++
T Consensus       298 d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       298 DGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             cCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence                 22233335776   77789999999999976 5554

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.21  E-value=0.58  Score=52.67  Aligned_cols=159  Identities=14%  Similarity=0.141  Sum_probs=98.5

Q ss_pred             eEEEEEeCCCCCEEE-EEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCC------CCEEEEEeCCCeEEEEEc
Q 004969          456 PRQFEYHPSISCLMV-FGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKY------PSKLIAGSDNGSLKLYDI  528 (721)
Q Consensus       456 V~~lafsP~dg~~La-sGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d------~~~LaSgs~DGtVrIWDi  528 (721)
                      |..+-.+..+.++|+ +|.....++-.|++.|+++..+..  |.. |+-+.+.|..      ...-+.|-.|..|.-||.
T Consensus       335 P~K~mL~~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~--~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDp  411 (644)
T KOG2395|consen  335 PHKAMLHRADSNLILMDGGEQDKLYKLDIERGKIVEEWKF--EDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDP  411 (644)
T ss_pred             cchhhhhccccceEeeCCCCcCcceeeecccceeeeEeec--cCC-cceeeccCCcchhcccccccEEeecCCceEEecc
Confidence            333333333445444 555666788899999999999874  333 6666665321      122344667788999999


Q ss_pred             CCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcE
Q 004969          529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSI  608 (721)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~l  608 (721)
                      +-.......   ......+.......|.+- ..++++++||.+|.||+||- .+...++...+-..+|..|..+.+|. +
T Consensus       412 Rv~~~~kl~---~~q~kqy~~k~nFsc~aT-T~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGK-w  485 (644)
T KOG2395|consen  412 RVQGKNKLA---VVQSKQYSTKNNFSCFAT-TESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGK-W  485 (644)
T ss_pred             cccCcceee---eeeccccccccccceeee-cCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCc-E
Confidence            853321100   011112222334556655 45789999999999999997 55544443334889999999999994 4


Q ss_pred             EEEEECCCcEEEEECC
Q 004969          609 FATSSFDQDVKLWDLR  624 (721)
Q Consensus       609 LaSgs~DgtIrIWDlr  624 (721)
                      ++ |..+.++.+-++.
T Consensus       486 il-~Tc~tyLlLi~t~  500 (644)
T KOG2395|consen  486 IL-ATCKTYLLLIDTL  500 (644)
T ss_pred             EE-EecccEEEEEEEe
Confidence            43 3335667777654

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=94.04  E-value=7.8  Score=42.19  Aligned_cols=204  Identities=13%  Similarity=0.105  Sum_probs=116.5

Q ss_pred             eEEEEEeCCCCCEEEEEE--CCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969          456 PRQFEYHPSISCLMVFGT--LDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs--~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~  533 (721)
                      ...+++++ +++++...-  ---.|.|-|+..++.+..+...|    +..+ + |..+.-+.+-+.||++.-..+.....
T Consensus        97 ~~~~~ls~-dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~i-y-P~~~~~F~~lC~DGsl~~v~Ld~~Gk  169 (342)
T PF06433_consen   97 KNMFALSA-DGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLI-Y-PSGNRGFSMLCGDGSLLTVTLDADGK  169 (342)
T ss_dssp             GGGEEE-T-TSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEE-E-EEETTEEEEEETTSCEEEEEETSTSS
T ss_pred             ccceEEcc-CCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEE-E-ecCCCceEEEecCCceEEEEECCCCC
Confidence            34467777 778777653  34578889999999988887533    3333 2 44556788999999999999985333


Q ss_pred             cccccccCcceeEeccCCCe-EEEEEecCCCEEEEEeCCCcEEEEECCCCcEEE--EEcc---c------cCCCeEEEEE
Q 004969          534 SIRGMHYGAGTVTFDEFDQL-TSVHVNSMDELFLASGYSKNIALYDINSGRRLQ--VFAD---M------HKEHINVVKF  601 (721)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~V-~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~--~l~~---~------h~~~V~sI~f  601 (721)
                      ....   +. .+.+...+++ ..-.+...++.++-.+..|.|+--|+.......  .+.-   .      ..+.-.-+++
T Consensus       170 ~~~~---~t-~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~  245 (342)
T PF06433_consen  170 EAQK---ST-KVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAY  245 (342)
T ss_dssp             EEEE---EE-EESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEE
T ss_pred             EeEe---ec-cccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeee
Confidence            2211   11 1111222222 233444556667768889999998888654322  2210   0      1122334778


Q ss_pred             cCCCCcEEEEEE--CC-----C--cEEEEECCCCCceeEEEecCCCCeEEEEEecCCC-EEEEEe-CCCcEEEEEcC-CC
Q 004969          602 SNHSPSIFATSS--FD-----Q--DVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDH-YLLGKG-SGTSMFVQSLR-GD  669 (721)
Q Consensus       602 sPdg~~lLaSgs--~D-----g--tIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~-~Lasgs-~Dg~I~VWDl~-g~  669 (721)
                      ++..+++++.-.  .+     +  .|-+||+.+++......+.  ....++..+.+.+ .|++.+ .++.+.+||.. |+
T Consensus       246 ~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~--~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk  323 (342)
T PF06433_consen  246 HAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE--HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK  323 (342)
T ss_dssp             ETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE--EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred             ccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC--CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence            776634433321  12     2  2667788887554433332  2233888898765 665554 57899999987 54


Q ss_pred             ccc
Q 004969          670 PFR  672 (721)
Q Consensus       670 ~l~  672 (721)
                      .++
T Consensus       324 ~~~  326 (342)
T PF06433_consen  324 LVR  326 (342)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            443

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=93.96  E-value=2.8  Score=43.84  Aligned_cols=142  Identities=11%  Similarity=0.221  Sum_probs=85.5

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEE-
Q 004969          510 YPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVF-  588 (721)
Q Consensus       510 d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l-  588 (721)
                      .++.|+.|..+| +.+++......          .........|..+..-+.-+.+++-+ |+.++++++.+-...... 
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~----------~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~   73 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSK----------PTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSA   73 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCcc----------ceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccc
Confidence            567899999998 88999833211          22222333488888888878777765 499999999864433310 


Q ss_pred             ------------ccccCCCeEEEE--EcCCCCcEEEEEECCCcEEEEECCCC--Cc-eeEEEecCCCCeEEEEEecCCCE
Q 004969          589 ------------ADMHKEHINVVK--FSNHSPSIFATSSFDQDVKLWDLRQK--PI-QPCYTASSSKGNVMVCFSPDDHY  651 (721)
Q Consensus       589 ------------~~~h~~~V~sI~--fsPdg~~lLaSgs~DgtIrIWDlrs~--~~-~~~~~~~~~~~~vsl~fSpdg~~  651 (721)
                                  .-.....+...+  -.+.+...++ ......|.+|.....  .. .....+.-...+.+++|.  ++.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~-va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~  150 (275)
T PF00780_consen   74 PLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLC-VAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNK  150 (275)
T ss_pred             cccccccccccccccccCCeeEEeeccccccceEEE-EEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCE
Confidence                        101223344444  1223323444 444558998887663  22 334445555566688888  666


Q ss_pred             EEEEeCCCcEEEEEcC
Q 004969          652 LLGKGSGTSMFVQSLR  667 (721)
Q Consensus       652 Lasgs~Dg~I~VWDl~  667 (721)
                      ++.|. .....+.|+.
T Consensus       151 i~v~~-~~~f~~idl~  165 (275)
T PF00780_consen  151 ICVGT-SKGFYLIDLN  165 (275)
T ss_pred             EEEEe-CCceEEEecC
Confidence            77776 4446777776

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=93.90  E-value=1.7  Score=47.88  Aligned_cols=178  Identities=12%  Similarity=0.105  Sum_probs=89.5

Q ss_pred             CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEe---CCCe-EEEEEcCCCCCcccccccCcceeEeccCC
Q 004969          476 GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS---DNGS-LKLYDIRHMPPSIRGMHYGAGTVTFDEFD  551 (721)
Q Consensus       476 G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs---~DGt-VrIWDi~~~~~~~~~~~~~~~~~~~~~~~  551 (721)
                      ..|.-.|+.+|+....+.   ....+..+.|+|.++..|.-|-   .+.. -|||-+++.......+.....      ..
T Consensus       168 ~~i~~idl~tG~~~~v~~---~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~------~e  238 (386)
T PF14583_consen  168 CRIFTIDLKTGERKVVFE---DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME------GE  238 (386)
T ss_dssp             EEEEEEETTT--EEEEEE---ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---T------TE
T ss_pred             ceEEEEECCCCceeEEEe---cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCC------Cc
Confidence            456666788887665554   2467889999988888777653   3443 488988764432222221111      11


Q ss_pred             CeEEEEEecCCCEEEEEeC-----CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCC----------
Q 004969          552 QLTSVHVNSMDELFLASGY-----SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQ----------  616 (721)
Q Consensus       552 ~V~sv~~sp~~~~lls~g~-----Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~Dg----------  616 (721)
                      .+..=-|.++|..+..-+.     +..|.-+|+.+++......   ..+.....-+++| .+++-=+.|.          
T Consensus       239 ~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~---~p~~~H~~ss~Dg-~L~vGDG~d~p~~v~~~~~~  314 (386)
T PF14583_consen  239 SVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLME---MPWCSHFMSSPDG-KLFVGDGGDAPVDVADAGGY  314 (386)
T ss_dssp             EEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEE---E-SEEEEEE-TTS-SEEEEEE-------------
T ss_pred             ccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEe---CCceeeeEEcCCC-CEEEecCCCCCccccccccc
Confidence            2344467788877665432     4467778888876644322   2244556667888 6665433332          


Q ss_pred             ------cEEEEECCCCCceeEEEe-------cCCCCe--EEEEEecCCCEEEEE-eCCCcEEEEEc
Q 004969          617 ------DVKLWDLRQKPIQPCYTA-------SSSKGN--VMVCFSPDDHYLLGK-GSGTSMFVQSL  666 (721)
Q Consensus       617 ------tIrIWDlrs~~~~~~~~~-------~~~~~~--vsl~fSpdg~~Lasg-s~Dg~I~VWDl  666 (721)
                            .|+++++..+....+...       .++...  --..|+|||++++-. ...|...||=+
T Consensus       315 ~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v  380 (386)
T PF14583_consen  315 KIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV  380 (386)
T ss_dssp             ------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred             eecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence                  466788877644332221       111111  157999999987654 45666666543

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=93.64  E-value=2  Score=50.49  Aligned_cols=188  Identities=13%  Similarity=0.158  Sum_probs=104.2

Q ss_pred             CCCEEEEEECC------CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC------CeEEEEEcCCCC
Q 004969          465 ISCLMVFGTLD------GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN------GSLKLYDIRHMP  532 (721)
Q Consensus       465 dg~~LasGs~D------G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D------GtVrIWDi~~~~  532 (721)
                      .+.+++.|+.+      ..+..+|..++.....-.. .+...-.+++..  ++...++||.|      .++-.||..+.+
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m-~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~  360 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPM-PSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQ  360 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCC-CcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCc
Confidence            45667777776      4678889888755443332 233345556654  56788889988      356677777755


Q ss_pred             CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCC-----cEEEEECCCCcEEEE--EccccCCCeEEEEEcCCC
Q 004969          533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSK-----NIALYDINSGRRLQV--FADMHKEHINVVKFSNHS  605 (721)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg-----~IrlWDl~s~~~v~~--l~~~h~~~V~sI~fsPdg  605 (721)
                      ..  ...      .+.....-.+++. -.|...++||.||     ++-.||..+.+.-..  +.. .......+.+  +|
T Consensus       361 W~--~~a------~M~~~R~~~~v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~--~g  428 (571)
T KOG4441|consen  361 WT--PVA------PMNTKRSDFGVAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVL--GG  428 (571)
T ss_pred             ee--ccC------CccCccccceeEE-ECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEE--CC
Confidence            31  110      1111111111222 2566677777764     588888887553222  111 1112222223  34


Q ss_pred             CcEEEEEECCC------cEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCC-----cEEEEEcCCC
Q 004969          606 PSIFATSSFDQ------DVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGT-----SMFVQSLRGD  669 (721)
Q Consensus       606 ~~lLaSgs~Dg------tIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg-----~I~VWDl~g~  669 (721)
                       .+.++||.++      ++..||..++.+.....+........++. -++...+.||.|+     ++..||...+
T Consensus       429 -~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~  501 (571)
T KOG4441|consen  429 -KLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETN  501 (571)
T ss_pred             -EEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCC
Confidence             7888888654      57889999887655444333222223332 3567777787776     2566776643

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=93.56  E-value=0.21  Score=38.17  Aligned_cols=31  Identities=32%  Similarity=0.462  Sum_probs=28.0

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN  487 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~  487 (721)
                      .|.+++|+| ..+++|.|+.+|.|.++.+ +++
T Consensus        13 ~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   13 RVSCMSWCP-TMDLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             cEEEEEECC-CCCEEEEEECCCeEEEEEC-CCc
Confidence            589999999 8999999999999999998 444

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=93.43  E-value=12  Score=39.43  Aligned_cols=183  Identities=15%  Similarity=0.123  Sum_probs=108.2

Q ss_pred             eEEEEEeCCCCCEEEEEECCC--eEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969          456 PRQFEYHPSISCLMVFGTLDG--EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG--~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~  533 (721)
                      ...+.|.. ++.++-+.+.-|  .|+.+|+.+|+......... .----+++..  ++....-.=.++...+||..+-+.
T Consensus        47 TQGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~-~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~  122 (264)
T PF05096_consen   47 TQGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP-RYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKK  122 (264)
T ss_dssp             EEEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT-T--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred             CccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc-cccceeEEEE--CCEEEEEEecCCeEEEEccccceE
Confidence            55688866 677888877766  88999999999877665422 1222344443  333333444678999999987433


Q ss_pred             cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcc----ccCCCeEEEEEcCCCCcEE
Q 004969          534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD----MHKEHINVVKFSNHSPSIF  609 (721)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~----~h~~~V~sI~fsPdg~~lL  609 (721)
                                ..++.....=+.++  .++..++.+.....++++|..+-+.+..+.-    ..-..++-+.|- +| .+.
T Consensus       123 ----------~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G-~Iy  188 (264)
T PF05096_consen  123 ----------IGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NG-KIY  188 (264)
T ss_dssp             ----------EEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TT-EEE
T ss_pred             ----------EEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cC-EEE
Confidence                      22232233335555  4778888887788999999988776665542    122345566675 45 566


Q ss_pred             EEEECCCcEEEEECCCCCceeEEEec---------CC----CCeE-EEEEecCCCEEEEEe
Q 004969          610 ATSSFDQDVKLWDLRQKPIQPCYTAS---------SS----KGNV-MVCFSPDDHYLLGKG  656 (721)
Q Consensus       610 aSgs~DgtIrIWDlrs~~~~~~~~~~---------~~----~~~v-sl~fSpdg~~Lasgs  656 (721)
                      |-.=....|...|..++.......+.         ..    .... .++|+|.+..+...|
T Consensus       189 ANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  189 ANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            66656667777788888655443221         11    2233 799999776655544

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=93.42  E-value=1.5  Score=50.21  Aligned_cols=125  Identities=12%  Similarity=0.151  Sum_probs=74.4

Q ss_pred             CCeEEEEEeeCC---CCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCC--eEEEEEecCCCEEEEEeCCCc
Q 004969          499 NSVLGLCWLKKY---PSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQ--LTSVHVNSMDELFLASGYSKN  573 (721)
Q Consensus       499 ~~V~sl~fsp~d---~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~--V~sv~~sp~~~~lls~g~Dg~  573 (721)
                      ..|.++.|.|..   ...+++......|.||.+.........+. ..........-+  -....|||....+++-.....
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l-~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv  135 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLL-MSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV  135 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccce-eeeeeeccCCcccCCCcccccCCCceEEEEecCce
Confidence            358999998752   22455666778999999863221100000 000111111111  256789999888877665554


Q ss_pred             EEEEECCCC-cEE-EEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCC
Q 004969          574 IALYDINSG-RRL-QVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQK  626 (721)
Q Consensus       574 IrlWDl~s~-~~v-~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~  626 (721)
                      -.+++++.. ..+ ..+.  ..+.|.|.+|.+||.+++++.+..=.-++||-...
T Consensus       136 SV~~sV~~d~srVkaDi~--~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  136 SVLPSVHCDSSRVKADIK--TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             eEeeeeeeCCceEEEecc--CCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence            456666643 223 3333  67899999999999665555555555678986543

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.38  E-value=0.95  Score=54.87  Aligned_cols=73  Identities=21%  Similarity=0.286  Sum_probs=55.9

Q ss_pred             cCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCC-CCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 004969          454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAM-NSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH  530 (721)
Q Consensus       454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~-~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~  530 (721)
                      .+|++++|+. +|.+++.|-.+|.|.+||+.+++..+.+...+|. ..|..+.|. .++..++++..-|.  +|...-
T Consensus       131 ~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t-~~nS~llt~D~~Gs--f~~lv~  204 (1206)
T KOG2079|consen  131 GPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRT-SQNSKLLTSDTGGS--FWKLVF  204 (1206)
T ss_pred             CcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEe-CCCcEEEEccCCCc--eEEEEe
Confidence            3699999999 9999999999999999999999998888754442 234444554 45557888877776  676543

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=93.34  E-value=5.8  Score=43.13  Aligned_cols=169  Identities=10%  Similarity=0.078  Sum_probs=98.0

Q ss_pred             EEEeCCCCCEEEEEECCCeEEEEECC-CCeEEEEeec--CCCCCCeE-EEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          459 FEYHPSISCLMVFGTLDGEIVVVNHE-NENIVSYIPS--FGAMNSVL-GLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       459 lafsP~dg~~LasGs~DG~I~IWdl~-tg~~i~~l~~--~~H~~~V~-sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .-.-|..+..+.+-+.||.+.-..+. .|+.......  .....++. .=++. ..+..++-.+..|.|+--|+......
T Consensus       140 ~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~-~~~~~~~F~Sy~G~v~~~dlsg~~~~  218 (342)
T PF06433_consen  140 WLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYS-RDGGRLYFVSYEGNVYSADLSGDSAK  218 (342)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEE-TTTTEEEEEBTTSEEEEEEETTSSEE
T ss_pred             EEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceE-CCCCeEEEEecCCEEEEEeccCCccc
Confidence            33345444678888999999988887 5555432211  11122332 22333 44556666789999999998876532


Q ss_pred             cccccc----CcceeEeccCCCeEEEEEecCCCEEEEEe---C-----C--CcEEEEECCCCcEEEEEccccCCCeEEEE
Q 004969          535 IRGMHY----GAGTVTFDEFDQLTSVHVNSMDELFLASG---Y-----S--KNIALYDINSGRRLQVFADMHKEHINVVK  600 (721)
Q Consensus       535 ~~~~~~----~~~~~~~~~~~~V~sv~~sp~~~~lls~g---~-----D--g~IrlWDl~s~~~v~~l~~~h~~~V~sI~  600 (721)
                      ......    ......+ -++.-.-+++|+..+.+++--   .     |  ..|.++|+.+++.+..+..  ..++.+|+
T Consensus       219 ~~~~~~~~t~~e~~~~W-rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l--~~~~~Si~  295 (342)
T PF06433_consen  219 FGKPWSLLTDAEKADGW-RPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL--EHPIDSIA  295 (342)
T ss_dssp             EEEEEESS-HHHHHTTE-EE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE--EEEESEEE
T ss_pred             ccCcccccCccccccCc-CCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC--CCccceEE
Confidence            111000    0000000 012234567777766666542   1     2  3588999999999998873  44677999


Q ss_pred             EcCCCCcEEEE-EECCCcEEEEECCCCCceeE
Q 004969          601 FSNHSPSIFAT-SSFDQDVKLWDLRQKPIQPC  631 (721)
Q Consensus       601 fsPdg~~lLaS-gs~DgtIrIWDlrs~~~~~~  631 (721)
                      .+.+..-+|++ ...++.+.+||..+++....
T Consensus       296 Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~  327 (342)
T PF06433_consen  296 VSQDDKPLLYALSAGDGTLDVYDAATGKLVRS  327 (342)
T ss_dssp             EESSSS-EEEEEETTTTEEEEEETTT--EEEE
T ss_pred             EccCCCcEEEEEcCCCCeEEEEeCcCCcEEee
Confidence            99877445554 45689999999999965443

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=93.08  E-value=0.034  Score=64.51  Aligned_cols=71  Identities=25%  Similarity=0.395  Sum_probs=50.1

Q ss_pred             ceEeecccccccccccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhh
Q 004969          127 CEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAEL  203 (721)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (721)
                      =|.||||.|.|.|--++-.++.||+|.|.|| .++-++--=-..+ +|..|.+-||    --||...+-||.+|..|
T Consensus       189 le~LnLshNk~~~v~~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L~~L~lrnN----~l~tL~gie~LksL~~L  259 (1096)
T KOG1859|consen  189 LESLNLSHNKFTKVDNLRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KLQLLNLRNN----ALTTLRGIENLKSLYGL  259 (1096)
T ss_pred             hhhhccchhhhhhhHHHHhcccccccccccc-hhccccccchhhh-hheeeeeccc----HHHhhhhHHhhhhhhcc
Confidence            3679999999999999999999999999965 3333321000011 1555555555    44666999999999888

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=92.99  E-value=2.3  Score=50.04  Aligned_cols=184  Identities=14%  Similarity=0.099  Sum_probs=100.1

Q ss_pred             EEEEeCCCCCEEEEEECC------CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCe-----EEEE
Q 004969          458 QFEYHPSISCLMVFGTLD------GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGS-----LKLY  526 (721)
Q Consensus       458 ~lafsP~dg~~LasGs~D------G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGt-----VrIW  526 (721)
                      +++..  ++.+.++|+.|      .++..||..+++....-+... ...-.+++-  -++...+.||.||.     |-.|
T Consensus       327 ~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~-~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~Y  401 (571)
T KOG4441|consen  327 GVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNT-KRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECY  401 (571)
T ss_pred             cEEEE--CCEEEEEccccCCCcccceEEEecCCCCceeccCCccC-ccccceeEE--ECCEEEEEeccccccccccEEEe
Confidence            34444  45888899988      467788887776544221111 112223333  36788889998864     6667


Q ss_pred             EcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC------CcEEEEECCCCcEEE--EEccccCCCeEE
Q 004969          527 DIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS------KNIALYDINSGRRLQ--VFADMHKEHINV  598 (721)
Q Consensus       527 Di~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D------g~IrlWDl~s~~~v~--~l~~~h~~~V~s  598 (721)
                      |..+.+......-..   .    ......+.+  .+...++||.+      .++..||..+++...  .+.. .... ..
T Consensus       402 Dp~~~~W~~va~m~~---~----r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~-~R~~-~g  470 (571)
T KOG4441|consen  402 DPVTNKWTPVAPMLT---R----RSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNT-RRSG-FG  470 (571)
T ss_pred             cCCCCcccccCCCCc---c----eeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccc-cccc-ce
Confidence            777755421110000   0    011122222  56666667643      467899998776432  2221 1111 12


Q ss_pred             EEEcCCCCcEEEEEECCCc-----EEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCc
Q 004969          599 VKFSNHSPSIFATSSFDQD-----VKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTS  660 (721)
Q Consensus       599 I~fsPdg~~lLaSgs~Dgt-----IrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~  660 (721)
                      ++.. ++ .+.+.||.|+.     |..||..+.+...+...........++ .-++...++|+.||.
T Consensus       471 ~a~~-~~-~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~-~~~~~ly~vGG~~~~  534 (571)
T KOG4441|consen  471 VAVL-NG-KIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVV-VLGGKLYAVGGFDGN  534 (571)
T ss_pred             EEEE-CC-EEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEE-EECCEEEEEecccCc
Confidence            3333 34 68888888763     788999998765553333333332222 225666777777763

>PRK13616 lipoprotein LpqB; Provisional

Probab=92.71  E-value=8.5  Score=45.43  Aligned_cols=157  Identities=8%  Similarity=0.011  Sum_probs=83.4

Q ss_pred             CeEEEEEeCCCCCEEEEEE------CCC--eEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC-CeEEE
Q 004969          455 RPRQFEYHPSISCLMVFGT------LDG--EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN-GSLKL  525 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs------~DG--~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D-GtVrI  525 (721)
                      .+...+++| +++.++...      .|+  .|.+++.. +.. ..+.. +.  ..+.-.|+ +++..+.+.+.. ..+++
T Consensus       351 ~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~--~~t~PsWs-pDG~~lw~v~dg~~~~~v  423 (591)
T PRK13616        351 NITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GH--SLTRPSWS-LDADAVWVVVDGNTVVRV  423 (591)
T ss_pred             CcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CC--CCCCceEC-CCCCceEEEecCcceEEE
Confidence            477889999 788776655      244  44444542 323 33321 32  36777888 677766666533 22333


Q ss_pred             EEcCCCCCc-ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEE---EECCCCcE-E---EEEccccCCCeE
Q 004969          526 YDIRHMPPS-IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIAL---YDINSGRR-L---QVFADMHKEHIN  597 (721)
Q Consensus       526 WDi~~~~~~-~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~Irl---WDl~s~~~-v---~~l~~~h~~~V~  597 (721)
                      .+-...... .....+.. ... .....|..+.|+|+|..++... ++.|.+   -....|.. +   +.+...-...+.
T Consensus       424 ~~~~~~gql~~~~vd~ge-~~~-~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~  500 (591)
T PRK13616        424 IRDPATGQLARTPVDASA-VAS-RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAV  500 (591)
T ss_pred             eccCCCceEEEEeccCch-hhh-ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccc
Confidence            322111110 00111111 111 2235699999999999988776 466766   44344541 1   112221334468


Q ss_pred             EEEEcCCCCcEEEEEECCCcEEEEEC
Q 004969          598 VVKFSNHSPSIFATSSFDQDVKLWDL  623 (721)
Q Consensus       598 sI~fsPdg~~lLaSgs~DgtIrIWDl  623 (721)
                      .+.|.+++ .+ +++..++...+|.+
T Consensus       501 ~l~W~~~~-~L-~V~~~~~~~~v~~v  524 (591)
T PRK13616        501 SLDWRTGD-SL-VVGRSDPEHPVWYV  524 (591)
T ss_pred             cceEecCC-EE-EEEecCCCCceEEE
Confidence            89999988 44 45555554445544

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=92.68  E-value=1.9  Score=48.21  Aligned_cols=113  Identities=17%  Similarity=0.195  Sum_probs=71.7

Q ss_pred             EEEEEecCCCEEEEEe-CC----CcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECC----------CcE
Q 004969          554 TSVHVNSMDELFLASG-YS----KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD----------QDV  618 (721)
Q Consensus       554 ~sv~~sp~~~~lls~g-~D----g~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~D----------gtI  618 (721)
                      ....++|++.+++.+- ..    ..++++|+.+|+.+.....  ......+.|.+++..++.+...+          ..|
T Consensus       127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~--~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE--NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE--EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc--ccccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence            4677889999888763 22    3599999999987654321  11223499999984455554333          237


Q ss_pred             EEEECCCCCce--eEEEecCCCC-eEEEEEecCCCEEEEEeCC----CcEEEEEcCC
Q 004969          619 KLWDLRQKPIQ--PCYTASSSKG-NVMVCFSPDDHYLLGKGSG----TSMFVQSLRG  668 (721)
Q Consensus       619 rIWDlrs~~~~--~~~~~~~~~~-~vsl~fSpdg~~Lasgs~D----g~I~VWDl~g  668 (721)
                      +.|.+.+....  .++....... .+.+..++|+++++.....    ..+++.++..
T Consensus       205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~  261 (414)
T PF02897_consen  205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD  261 (414)
T ss_dssp             EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred             EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence            88888876544  3454444444 5589999999998865433    3467777764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=92.53  E-value=0.32  Score=49.39  Aligned_cols=140  Identities=13%  Similarity=0.150  Sum_probs=80.3

Q ss_pred             EEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC-CcEEEEEccc
Q 004969          513 KLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINS-GRRLQVFADM  591 (721)
Q Consensus       513 ~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s-~~~v~~l~~~  591 (721)
                      .+...+.||+|+-++++..+...+...       +....  ..+  -..+..++.|+.+|.|.+|...- +.....+.. 
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~rse~-------~~~e~--~~v--~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s-   99 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESCRSER-------FIDEG--QRV--VTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCS-   99 (238)
T ss_pred             hhccccCCcccccchhhhhhhhhhhhh-------hhhcc--eee--cccCceEEeecccceEEEecCCccchHHHhhhc-
Confidence            355567889999888876443221111       10001  111  12467788899999999998872 111111111 


Q ss_pred             cCCCeEE-EEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCC-C-eEEEEEecCCCEEEEE--eCCCcEEEEEc
Q 004969          592 HKEHINV-VKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSK-G-NVMVCFSPDDHYLLGK--GSGTSMFVQSL  666 (721)
Q Consensus       592 h~~~V~s-I~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~-~-~vsl~fSpdg~~Lasg--s~Dg~I~VWDl  666 (721)
                      -...|.+ |.-..++ .+..+++.||.||.|++.-.+..  -....|. . ......+..+++++.+  |.|..++.|++
T Consensus       100 ~~e~i~~~Ip~~~~~-~~~c~~~~dg~ir~~n~~p~k~~--g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v  176 (238)
T KOG2444|consen  100 GEESIDLGIPNGRDS-SLGCVGAQDGRIRACNIKPNKVL--GYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNV  176 (238)
T ss_pred             ccccceecccccccc-ceeEEeccCCceeeeccccCcee--eeeccccCCCcceeEEecCCceEEeeccccchhhhhcch
Confidence            1122222 2222333 58899999999999999876432  2222232 2 2245555667777777  77778888887


Q ss_pred             C
Q 004969          667 R  667 (721)
Q Consensus       667 ~  667 (721)
                      .
T Consensus       177 e  177 (238)
T KOG2444|consen  177 E  177 (238)
T ss_pred             h
Confidence            5

>PHA02790 Kelch-like protein; Provisional

Probab=92.52  E-value=5.6  Score=45.74  Aligned_cols=184  Identities=11%  Similarity=0.016  Sum_probs=90.5

Q ss_pred             CCCEEEEEECCC-----eEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC--CeEEEEEcCCCCCcccc
Q 004969          465 ISCLMVFGTLDG-----EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN--GSLKLYDIRHMPPSIRG  537 (721)
Q Consensus       465 dg~~LasGs~DG-----~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D--GtVrIWDi~~~~~~~~~  537 (721)
                      ++.++++|+.++     ++..||..++.....-+....... .+++.  .++...+.||.+  .++..||..+++.  ..
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~-~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W--~~  345 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLY-ASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAW--VN  345 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhc-ceEEE--ECCEEEEECCcCCCCceEEEECCCCeE--EE
Confidence            456777787643     567788877654432221111111 22232  356666777754  3577788655322  11


Q ss_pred             cccCcceeEeccCC-CeEEEEEecCCCEEEEEeCC---CcEEEEECCCCcEEEEEccccC-CCeEEEEEcCCCCcEEEEE
Q 004969          538 MHYGAGTVTFDEFD-QLTSVHVNSMDELFLASGYS---KNIALYDINSGRRLQVFADMHK-EHINVVKFSNHSPSIFATS  612 (721)
Q Consensus       538 ~~~~~~~~~~~~~~-~V~sv~~sp~~~~lls~g~D---g~IrlWDl~s~~~v~~l~~~h~-~~V~sI~fsPdg~~lLaSg  612 (721)
                      ..      .+.... ....+..  ++...+.||.+   ..+..||.++.+-...-.-... .....+.+  +| .+.+.|
T Consensus       346 ~~------~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~--~~-~IYv~G  414 (480)
T PHA02790        346 MP------SLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVF--GR-RLFLVG  414 (480)
T ss_pred             CC------CCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEE--CC-EEEEEC
Confidence            10      111111 1122222  55666666654   3577899887654332110011 11122223  34 566666


Q ss_pred             ECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEEcCC
Q 004969          613 SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG-----TSMFVQSLRG  668 (721)
Q Consensus       613 s~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D-----g~I~VWDl~g  668 (721)
                      +   .+.+||..+++...+..+.......+++. -+|+..+.||.+     ..+..||...
T Consensus       415 G---~~e~ydp~~~~W~~~~~m~~~r~~~~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~  471 (480)
T PHA02790        415 R---NAEFYCESSNTWTLIDDPIYPRDNPELII-VDNKLLLIGGFYRGSYIDTIEVYNNRT  471 (480)
T ss_pred             C---ceEEecCCCCcEeEcCCCCCCccccEEEE-ECCEEEEECCcCCCcccceEEEEECCC
Confidence            4   57889998876654433322222223332 366777777754     2455666653

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=92.37  E-value=23  Score=39.97  Aligned_cols=156  Identities=10%  Similarity=0.119  Sum_probs=89.1

Q ss_pred             eCCCCCEEEEEECCCeEEEEECCCCe-----EEEEeecCCCCCCeEEEEEee---CCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969          462 HPSISCLMVFGTLDGEIVVVNHENEN-----IVSYIPSFGAMNSVLGLCWLK---KYPSKLIAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       462 sP~dg~~LasGs~DG~I~IWdl~tg~-----~i~~l~~~~H~~~V~sl~fsp---~d~~~LaSgs~DGtVrIWDi~~~~~  533 (721)
                      ++++...|++|+..|.++||+...+.     .+-..   .-..+|..|+.-+   ......++.=.-..+.||.+.....
T Consensus        33 ~~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~---~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g  109 (418)
T PF14727_consen   33 SPSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLET---QLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDG  109 (418)
T ss_pred             CCCCccEEEEeccccEEEEEccCCCCCCCccEEEEE---ecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCC
Confidence            34466899999999999999986433     22222   2347888887632   1223333445566788888843221


Q ss_pred             cccccccCcceeEeccC--CCeEEEEEecC-----CCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCC
Q 004969          534 SIRGMHYGAGTVTFDEF--DQLTSVHVNSM-----DELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSP  606 (721)
Q Consensus       534 ~~~~~~~~~~~~~~~~~--~~V~sv~~sp~-----~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~  606 (721)
                      ....-....-...+.|.  .....+++-|-     .+.+.+-+.||.+.+|+-+.-...+.+.+  ---...+.|.|.. 
T Consensus       110 ~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~--~llPgPl~Y~~~t-  186 (418)
T PF14727_consen  110 TVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD--FLLPGPLCYCPRT-  186 (418)
T ss_pred             CcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC--CCCCcCeEEeecC-
Confidence            10000000001122222  22333333232     25677778899999999775444444432  2222346777776 


Q ss_pred             cEEEEEECCCcEEEEEC
Q 004969          607 SIFATSSFDQDVKLWDL  623 (721)
Q Consensus       607 ~lLaSgs~DgtIrIWDl  623 (721)
                      ..|++++.+..+.-|..
T Consensus       187 Dsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  187 DSFVTASSSWTLECYKY  203 (418)
T ss_pred             CEEEEecCceeEEEecH
Confidence            68889988888888875

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=92.36  E-value=0.47  Score=48.21  Aligned_cols=107  Identities=14%  Similarity=0.232  Sum_probs=62.4

Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCe-EEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 004969          509 KYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQL-TSVHVNSMDELFLASGYSKNIALYDINSGRRLQV  587 (721)
Q Consensus       509 ~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V-~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~  587 (721)
                      ..+..++.|+.+|.|.+|.......       +...+... ...| ..+..-.++....+++.||.||.|++.-++.+-.
T Consensus        68 ~~~~~~~vG~~dg~v~~~n~n~~g~-------~~d~~~s~-~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~  139 (238)
T KOG2444|consen   68 TASAKLMVGTSDGAVYVFNWNLEGA-------HSDRVCSG-EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGY  139 (238)
T ss_pred             ccCceEEeecccceEEEecCCccch-------HHHhhhcc-cccceeccccccccceeEEeccCCceeeeccccCceeee
Confidence            3457899999999999999874221       11111111 1111 2222222344677778899999999987776655


Q ss_pred             EccccC-CCeEEEEEcCCCCcEEEEE--ECCCcEEEEECCC
Q 004969          588 FADMHK-EHINVVKFSNHSPSIFATS--SFDQDVKLWDLRQ  625 (721)
Q Consensus       588 l~~~h~-~~V~sI~fsPdg~~lLaSg--s~DgtIrIWDlrs  625 (721)
                      ... |. .++.....+..+ ..++.+  |.|..++.|++..
T Consensus       140 ~g~-h~~~~~e~~ivv~sd-~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  140 VGQ-HNFESGEELIVVGSD-EFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ecc-ccCCCcceeEEecCC-ceEEeeccccchhhhhcchhh
Confidence            543 65 344333333333 455555  6666777777654

>PLN03150 hypothetical protein; Provisional

Probab=92.32  E-value=0.083  Score=62.65  Aligned_cols=77  Identities=19%  Similarity=0.265  Sum_probs=58.0

Q ss_pred             Eeecccccccc--cccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhccc
Q 004969          129 VLNLRSSRFRK--LNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQ  206 (721)
Q Consensus       129 ~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (721)
                      .|+|++|.+.-  -..++.+++|++|+|. .|.++..-...|..|++|+.|.+.+|++...-  -..+.+|++|+.|.+.
T Consensus       422 ~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls-~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~i--P~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        422 GLGLDNQGLRGFIPNDISKLRHLQSINLS-GNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI--PESLGQLTSLRILNLN  498 (623)
T ss_pred             EEECCCCCccccCCHHHhCCCCCCEEECC-CCcccCcCChHHhCCCCCCEEECCCCCCCCCC--chHHhcCCCCCEEECc
Confidence            57788777641  1235678999999999 77887555566899999999999999887321  2457889999999766


Q ss_pred             ee
Q 004969          207 NW  208 (721)
Q Consensus       207 ~~  208 (721)
                      .+
T Consensus       499 ~N  500 (623)
T PLN03150        499 GN  500 (623)
T ss_pred             CC
Confidence            54

>PLN03210 Resistant to P

Probab=92.20  E-value=0.097  Score=66.57  Aligned_cols=103  Identities=19%  Similarity=0.296  Sum_probs=64.8

Q ss_pred             cccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccc-cccccceeeEEecccccccccccccccccccccchh
Q 004969           99 DQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN-MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL  177 (721)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  177 (721)
                      -.+||.+++..+.+ +..-.+.....|  +.|+|+.|++.+|- -++.+++|.+|+|.+++.++.++.  ++.+|||+.|
T Consensus       588 p~~Lr~L~~~~~~l-~~lP~~f~~~~L--~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L  662 (1153)
T PLN03210        588 PPKLRLLRWDKYPL-RCMPSNFRPENL--VKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETL  662 (1153)
T ss_pred             CcccEEEEecCCCC-CCCCCcCCccCC--cEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEE
Confidence            35788888877532 111111122223  45888888888773 345678888888887777777764  5667888888


Q ss_pred             cccccc-chhhhHHHHHhhcCCcchhhccceee
Q 004969          178 SMCETR-VGNLWTTIAALSKLPSLAELRFQNWL  209 (721)
Q Consensus       178 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (721)
                      .|.++. ...+   -..+.+|++|+.|.|..|-
T Consensus       663 ~L~~c~~L~~l---p~si~~L~~L~~L~L~~c~  692 (1153)
T PLN03210        663 KLSDCSSLVEL---PSSIQYLNKLEDLDMSRCE  692 (1153)
T ss_pred             EecCCCCcccc---chhhhccCCCCEEeCCCCC
Confidence            887643 2222   1345667777777777654

syringae 6; Provisional

>PRK13616 lipoprotein LpqB; Provisional

Probab=92.05  E-value=5.2  Score=47.23  Aligned_cols=169  Identities=12%  Similarity=0.002  Sum_probs=88.8

Q ss_pred             CCeEEEEEeeCCCCEEEEEe------CCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC-
Q 004969          499 NSVLGLCWLKKYPSKLIAGS------DNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS-  571 (721)
Q Consensus       499 ~~V~sl~fsp~d~~~LaSgs------~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D-  571 (721)
                      ..+.+.+.+ ++++.++..-      .|+.-.+|-...+... .       ...  .......-.|+|+++.+.+.... 
T Consensus       350 ~~vsspaiS-pdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~-------~lt--~g~~~t~PsWspDG~~lw~v~dg~  418 (591)
T PRK13616        350 GNITSAALS-RSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-V-------QVL--EGHSLTRPSWSLDADAVWVVVDGN  418 (591)
T ss_pred             cCcccceEC-CCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-e-------eee--cCCCCCCceECCCCCceEEEecCc
Confidence            467788888 5777665554      2444445543322211 1       111  11125666788887766665432 


Q ss_pred             -----------CcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEE---EECCCCCceeE---EEe
Q 004969          572 -----------KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKL---WDLRQKPIQPC---YTA  634 (721)
Q Consensus       572 -----------g~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrI---WDlrs~~~~~~---~~~  634 (721)
                                 +.+.+.++..+....   . ..+.|..+.|+|||. .++.-. ++.|.+   -....+. ..+   ..+
T Consensus       419 ~~~~v~~~~~~gql~~~~vd~ge~~~---~-~~g~Issl~wSpDG~-RiA~i~-~g~v~Va~Vvr~~~G~-~~l~~~~~l  491 (591)
T PRK13616        419 TVVRVIRDPATGQLARTPVDASAVAS---R-VPGPISELQLSRDGV-RAAMII-GGKVYLAVVEQTEDGQ-YALTNPREV  491 (591)
T ss_pred             ceEEEeccCCCceEEEEeccCchhhh---c-cCCCcCeEEECCCCC-EEEEEE-CCEEEEEEEEeCCCCc-eeecccEEe
Confidence                       233333444443322   1 356799999999994 444433 466666   4433443 111   112


Q ss_pred             -cCCCC-eEEEEEecCCCEEEEEeCCCcEEEEEc--CCCcccc-----cccCeEEEEECCC
Q 004969          635 -SSSKG-NVMVCFSPDDHYLLGKGSGTSMFVQSL--RGDPFRD-----FNMSILAAYTRPS  686 (721)
Q Consensus       635 -~~~~~-~vsl~fSpdg~~Lasgs~Dg~I~VWDl--~g~~l~~-----~~~~V~~v~fsP~  686 (721)
                       ..-.. ..++.|.+++..+ ++..++...+|.+  .|..-..     ....+..++-.|.
T Consensus       492 ~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~  551 (591)
T PRK13616        492 GPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS  551 (591)
T ss_pred             ecccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc
Confidence             22223 3478999999865 4554554555554  4443211     2346666776664

>PLN03210 Resistant to P

Probab=92.02  E-value=0.09  Score=66.86  Aligned_cols=78  Identities=14%  Similarity=0.195  Sum_probs=41.4

Q ss_pred             ceEeecccccccccccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhccc
Q 004969          127 CEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQ  206 (721)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (721)
                      ...|++..++++.|-..-.+.+|..|+|. .+.|+.++++ +..+++|+.|++.+++-  + +.+..++++++|.+|.+.
T Consensus       591 Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~-~s~l~~L~~~-~~~l~~Lk~L~Ls~~~~--l-~~ip~ls~l~~Le~L~L~  665 (1153)
T PLN03210        591 LRLLRWDKYPLRCMPSNFRPENLVKLQMQ-GSKLEKLWDG-VHSLTGLRNIDLRGSKN--L-KEIPDLSMATNLETLKLS  665 (1153)
T ss_pred             cEEEEecCCCCCCCCCcCCccCCcEEECc-Cccccccccc-cccCCCCCEEECCCCCC--c-CcCCccccCCcccEEEec
Confidence            34455555555555443345566666666 3446665543 34566666666654421  1 222445566666666665


Q ss_pred             eee
Q 004969          207 NWL  209 (721)
Q Consensus       207 ~~~  209 (721)
                      .|.
T Consensus       666 ~c~  668 (1153)
T PLN03210        666 DCS  668 (1153)
T ss_pred             CCC
Confidence            543

syringae 6; Provisional

>PHA02713 hypothetical protein; Provisional

Probab=92.02  E-value=1.5  Score=51.41  Aligned_cols=150  Identities=11%  Similarity=0.104  Sum_probs=79.9

Q ss_pred             CCCEEEEEECCC-----eEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCC------------------
Q 004969          465 ISCLMVFGTLDG-----EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG------------------  521 (721)
Q Consensus       465 dg~~LasGs~DG-----~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DG------------------  521 (721)
                      ++.+.+.||.+|     +|..||..+.+....-+. .+...-.+++-  .++...+.||.++                  
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~m-p~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~  427 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDM-PIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEED  427 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCC-CcccccccEEE--ECCEEEEEeCCCccccccccccccccccccc
Confidence            567788888764     478899887654332111 11111112222  3566777777653                  


Q ss_pred             -----eEEEEEcCCCCCcccccccCcceeEeccC-CCeEEEEEecCCCEEEEEeCC------CcEEEEECCC-CcE--EE
Q 004969          522 -----SLKLYDIRHMPPSIRGMHYGAGTVTFDEF-DQLTSVHVNSMDELFLASGYS------KNIALYDINS-GRR--LQ  586 (721)
Q Consensus       522 -----tVrIWDi~~~~~~~~~~~~~~~~~~~~~~-~~V~sv~~sp~~~~lls~g~D------g~IrlWDl~s-~~~--v~  586 (721)
                           ++..||..+.+.....        .+... .....+.+  ++...+.||.+      ..+..||..+ .+-  +.
T Consensus       428 ~~~~~~ve~YDP~td~W~~v~--------~m~~~r~~~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~  497 (557)
T PHA02713        428 THSSNKVIRYDTVNNIWETLP--------NFWTGTIRPGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT  497 (557)
T ss_pred             ccccceEEEECCCCCeEeecC--------CCCcccccCcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc
Confidence                 4666777664431110        01000 01112222  45556666643      2467899987 443  33


Q ss_pred             EEccccCCCeEEEEEcCCCCcEEEEEECCC--cEEEEECCCCCceeE
Q 004969          587 VFADMHKEHINVVKFSNHSPSIFATSSFDQ--DVKLWDLRQKPIQPC  631 (721)
Q Consensus       587 ~l~~~h~~~V~sI~fsPdg~~lLaSgs~Dg--tIrIWDlrs~~~~~~  631 (721)
                      .+.. .......+.+  +| .+.++|+.||  ++..||..+.+...+
T Consensus       498 ~m~~-~r~~~~~~~~--~~-~iyv~Gg~~~~~~~e~yd~~~~~W~~~  540 (557)
T PHA02713        498 TTES-RLSALHTILH--DN-TIMMLHCYESYMLQDTFNVYTYEWNHI  540 (557)
T ss_pred             ccCc-ccccceeEEE--CC-EEEEEeeecceeehhhcCcccccccch
Confidence            3332 2222333333  44 7999999998  788899988766433

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=91.94  E-value=0.064  Score=60.30  Aligned_cols=72  Identities=21%  Similarity=0.378  Sum_probs=42.3

Q ss_pred             eEeeccccccccccc-ccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhccc
Q 004969          128 EVLNLRSSRFRKLNM-IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQ  206 (721)
Q Consensus       128 ~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (721)
                      +.|+|..|.|++++. .+.+.+|.+|+|. .|.|++|  ...+++++|..|.+-+|.|+.+    ..+.-|++|..|.+.
T Consensus        98 ~~l~l~~n~i~~i~~~l~~~~~L~~L~ls-~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~----~~~~~l~~L~~l~l~  170 (414)
T KOG0531|consen   98 EALDLYDNKIEKIENLLSSLVNLQVLDLS-FNKITKL--EGLSTLTLLKELNLSGNLISDI----SGLESLKSLKLLDLS  170 (414)
T ss_pred             eeeeccccchhhcccchhhhhcchheecc-ccccccc--cchhhccchhhheeccCcchhc----cCCccchhhhcccCC
Confidence            346666666666666 6666666666666 5666666  5555666666666666665543    444445555544433

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=91.70  E-value=14  Score=43.08  Aligned_cols=30  Identities=17%  Similarity=0.305  Sum_probs=25.4

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCcEEEEEcc
Q 004969          561 MDELFLASGYSKNIALYDINSGRRLQVFAD  590 (721)
Q Consensus       561 ~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~  590 (721)
                      .+..+++++.+|.++.+|.++|+.+..+.-
T Consensus       471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~  500 (527)
T TIGR03075       471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKT  500 (527)
T ss_pred             CCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence            456777777799999999999999998873

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.57  E-value=7.7  Score=40.98  Aligned_cols=104  Identities=14%  Similarity=0.231  Sum_probs=69.9

Q ss_pred             eEEEEEeeCCCCEEEEEeCCCe-EEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC-----CcE
Q 004969          501 VLGLCWLKKYPSKLIAGSDNGS-LKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS-----KNI  574 (721)
Q Consensus       501 V~sl~fsp~d~~~LaSgs~DGt-VrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D-----g~I  574 (721)
                      ...|+|+|..+.-++-+-.-|+ ..++|..+.+..+.... ......+.|      =.||++|.+++++-.|     |.|
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s-~~~RHfyGH------Gvfs~dG~~LYATEndfd~~rGVi  142 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVS-QEGRHFYGH------GVFSPDGRLLYATENDFDPNRGVI  142 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEec-ccCceeecc------cccCCCCcEEEeecCCCCCCCceE
Confidence            3457777767777777766665 56789888766332221 222222322      2578999999887543     789


Q ss_pred             EEEECCCC-cEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969          575 ALYDINSG-RRLQVFADMHKEHINVVKFSNHSPSIFATSS  613 (721)
Q Consensus       575 rlWDl~s~-~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs  613 (721)
                      -+||.+.+ +.+-++.. |.-....+.|.+|| +.++.+.
T Consensus       143 GvYd~r~~fqrvgE~~t-~GiGpHev~lm~DG-rtlvvan  180 (366)
T COG3490         143 GVYDAREGFQRVGEFST-HGIGPHEVTLMADG-RTLVVAN  180 (366)
T ss_pred             EEEecccccceeccccc-CCcCcceeEEecCC-cEEEEeC
Confidence            99999854 45566665 88788889999999 6666554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=91.14  E-value=0.15  Score=61.50  Aligned_cols=66  Identities=18%  Similarity=0.242  Sum_probs=31.6

Q ss_pred             HHHHHHHh-cccceEeeccCCchhhHHHH-HhhcCCccceEeecccccccccccccccceeeEEeccccccccccc
Q 004969           91 ALSLMHAI-DQKLRVVDLHDSSFGKDFIR-NLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFK  164 (721)
Q Consensus        91 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  164 (721)
                      |++-|+.- .-+-.++||.++.+..  +- .+..   ..+.|+|+.|+|.+|..  ..+.|.+|+|. +|.|++++
T Consensus       191 a~~r~~~Cl~~~~~~LdLs~~~Lts--LP~~l~~---~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs-~N~LtsLP  258 (788)
T PRK15387        191 VVQKMRACLNNGNAVLNVGESGLTT--LPDCLPA---HITTLVIPDNNLTSLPA--LPPELRTLEVS-GNQLTSLP  258 (788)
T ss_pred             HHHHHHHHhcCCCcEEEcCCCCCCc--CCcchhc---CCCEEEccCCcCCCCCC--CCCCCcEEEec-CCccCccc
Confidence            45555433 3345566666654431  11 1111   23456666666665543  23556666665 45555554

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.04  E-value=2.5  Score=51.68  Aligned_cols=135  Identities=9%  Similarity=0.007  Sum_probs=87.0

Q ss_pred             CCeEEEEEecCCCEEEEE--eCCCcEEEEECCCCcEE-----EEEcc-----ccCCCeEEEEEcCCCCcEEEEEECCCcE
Q 004969          551 DQLTSVHVNSMDELFLAS--GYSKNIALYDINSGRRL-----QVFAD-----MHKEHINVVKFSNHSPSIFATSSFDQDV  618 (721)
Q Consensus       551 ~~V~sv~~sp~~~~lls~--g~Dg~IrlWDl~s~~~v-----~~l~~-----~h~~~V~sI~fsPdg~~lLaSgs~DgtI  618 (721)
                      -++..+...++....++.  +.+-.|..||+++-..-     .-+..     .......++.|+|.-+...++...|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            344555555664443333  34446999999853211     11111     0234556789999877778889999999


Q ss_pred             EEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCC--------cccccccCeEEEEECCCC
Q 004969          619 KLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGD--------PFRDFNMSILAAYTRPSS  687 (721)
Q Consensus       619 rIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~--------~l~~~~~~V~~v~fsP~~  687 (721)
                      ++..+..... .+..++.....++++|+|.|..++.|-..|++.-|.-...        +... ...|.++.|--..
T Consensus       181 ~V~~~~~~~~-~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e-~yrvl~v~Wl~t~  255 (1405)
T KOG3630|consen  181 RVKSTKQLAQ-NVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEE-NYRVLSVTWLSTQ  255 (1405)
T ss_pred             hhhhhhhhhh-hhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCC-CcceeEEEEecce
Confidence            9988765322 1233444444558999999999999999999988865432        1222 4678889987665

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=90.62  E-value=0.11  Score=62.04  Aligned_cols=91  Identities=22%  Similarity=0.381  Sum_probs=56.2

Q ss_pred             eEeeccCCchhhHHHHHhhcCCccceEeeccccc------ccccccccccceeeEEeccccccccccc-ccccccccccc
Q 004969          103 RVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSR------FRKLNMIGEFKRIHTLNLDYSTSLTSFK-EDCFSCMPNLI  175 (721)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~  175 (721)
                      ..||..+  +.++.+.+=+++-|.+  ||+++++      ++|.+.  .||.|.+|.+. +..+..-+ ..-+...|||.
T Consensus       104 ~~idi~~--lL~~~Ln~~sr~nL~~--LdI~G~~~~s~~W~~kig~--~LPsL~sL~i~-~~~~~~~dF~~lc~sFpNL~  176 (699)
T KOG3665|consen  104 ATIDIIS--LLKDLLNEESRQNLQH--LDISGSELFSNGWPKKIGT--MLPSLRSLVIS-GRQFDNDDFSQLCASFPNLR  176 (699)
T ss_pred             hhccHHH--HHHHHHhHHHHHhhhh--cCccccchhhccHHHHHhh--hCcccceEEec-CceecchhHHHHhhccCccc
Confidence            3455444  5566666656666655  6666432      223322  46666666665 33333222 13446788888


Q ss_pred             hhccccccchhhhHHHHHhhcCCcchhhc
Q 004969          176 CLSMCETRVGNLWTTIAALSKLPSLAELR  204 (721)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (721)
                      .|...+|+|.||    ..+|.|.+|..|-
T Consensus       177 sLDIS~TnI~nl----~GIS~LknLq~L~  201 (699)
T KOG3665|consen  177 SLDISGTNISNL----SGISRLKNLQVLS  201 (699)
T ss_pred             eeecCCCCccCc----HHHhccccHHHHh
Confidence            888888888888    7888888888884

>smart00446 LRRcap occurring C-terminal to leucine-rich repeats

Probab=90.50  E-value=0.15  Score=33.71  Aligned_cols=21  Identities=43%  Similarity=0.749  Sum_probs=18.9

Q ss_pred             HHHHHHHHHhCccccccCCCC
Q 004969          336 KHYRDYMIASLPKLKFLDNLP  356 (721)
Q Consensus       336 ~~yRe~~I~~Lp~Lk~Ldn~~  356 (721)
                      ++||++++..||+|+.||...
T Consensus         2 ~~YR~~Vi~~LPqL~~LD~~~   22 (26)
T smart00446        2 AHYREKVIRLLPQLRKLDXXX   22 (26)
T ss_pred             ccHHHHHHHHCCccceecccc
Confidence            479999999999999999754

A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.48  E-value=0.037  Score=58.18  Aligned_cols=103  Identities=20%  Similarity=0.334  Sum_probs=69.5

Q ss_pred             cceEeeccCCchhhHHHHHhhcCCccceEeeccccc--c----cccccccccceeeEEecccccccccccc-cccccccc
Q 004969          101 KLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSR--F----RKLNMIGEFKRIHTLNLDYSTSLTSFKE-DCFSCMPN  173 (721)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~  173 (721)
                      |+...|+.||++-.=-+.+=+..-.+-+++.|..++  +    .+-++.-.|+++..+-+. .+.|...+. -=|.-.|-
T Consensus       147 ~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~-e~PlK~~s~ek~se~~p~  225 (418)
T KOG2982|consen  147 KVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVC-EGPLKTESSEKGSEPFPS  225 (418)
T ss_pred             hhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeee-cCcccchhhcccCCCCCc
Confidence            666677777654322222222222333444444222  1    233444579999999888 777766654 56888888


Q ss_pred             cchhccccccchhhhHHHHHhhcCCcchhhcc
Q 004969          174 LICLSMCETRVGNLWTTIAALSKLPSLAELRF  205 (721)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (721)
                      +-+|.+..|+|. =|..+-||-+.|+|+-||.
T Consensus       226 ~~~LnL~~~~id-swasvD~Ln~f~~l~dlRv  256 (418)
T KOG2982|consen  226 LSCLNLGANNID-SWASVDALNGFPQLVDLRV  256 (418)
T ss_pred             chhhhhcccccc-cHHHHHHHcCCchhheeec
Confidence            899999999998 7999999999999999984

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=90.11  E-value=32  Score=37.47  Aligned_cols=233  Identities=15%  Similarity=0.199  Sum_probs=115.4

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeE---EEEeec--CCCCCCeEEEEEeeC--CCCEEEEEeC-C------
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENI---VSYIPS--FGAMNSVLGLCWLKK--YPSKLIAGSD-N------  520 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~---i~~l~~--~~H~~~V~sl~fsp~--d~~~LaSgs~-D------  520 (721)
                      .+++|+|.| ++.++++ ...|.|++++ ..+..   +..+..  ........+++++|.  ...+|..... .      
T Consensus         3 ~P~~~a~~p-dG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~   79 (331)
T PF07995_consen    3 NPRSMAFLP-DGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD   79 (331)
T ss_dssp             SEEEEEEET-TSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred             CceEEEEeC-CCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence            489999999 7777664 6699999999 44544   222211  133467899999852  2334433332 1      


Q ss_pred             --CeEEEEEcCCCCCcccccccCcceeEe-c----cCCCeEEEEEecCCCEEEEEeCCCc-------------EEEEECC
Q 004969          521 --GSLKLYDIRHMPPSIRGMHYGAGTVTF-D----EFDQLTSVHVNSMDELFLASGYSKN-------------IALYDIN  580 (721)
Q Consensus       521 --GtVrIWDi~~~~~~~~~~~~~~~~~~~-~----~~~~V~sv~~sp~~~~lls~g~Dg~-------------IrlWDl~  580 (721)
                        ..|.-|...........   ....+.. .    ....-..+.|.|++...++.|..+.             |.-.+..
T Consensus        80 ~~~~v~r~~~~~~~~~~~~---~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d  156 (331)
T PF07995_consen   80 NDNRVVRFTLSDGDGDLSS---EEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD  156 (331)
T ss_dssp             EEEEEEEEEEETTSCEEEE---EEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT
T ss_pred             cceeeEEEeccCCcccccc---ceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc
Confidence              23444444443111110   0001100 1    1123567999999977777664322             2222221


Q ss_pred             CCcE-------------EEEEccccCCCeEEEEEcCC-CCcEEEEE-ECCCcEEEEECCCCC------------------
Q 004969          581 SGRR-------------LQVFADMHKEHINVVKFSNH-SPSIFATS-SFDQDVKLWDLRQKP------------------  627 (721)
Q Consensus       581 s~~~-------------v~~l~~~h~~~V~sI~fsPd-g~~lLaSg-s~DgtIrIWDlrs~~------------------  627 (721)
                       ++.             ...+..++. ....++|+|. | .++++= +.|+.=.|--+..+.                  
T Consensus       157 -G~~p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg-~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~  233 (331)
T PF07995_consen  157 -GSIPADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTG-RLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPI  233 (331)
T ss_dssp             -SSB-TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTT-EEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-E
T ss_pred             -CcCCCCCccccCCCceEEEEEeCCC-ccccEEEECCCC-cEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcc
Confidence             110             001111122 2457899998 5 555442 333333333222211                  


Q ss_pred             ---------ceeEEEecCCCCeEEEEEec-------CCCEEEEEeCCCcEEEEEcC-CCc-------ccccccCeEEEEE
Q 004969          628 ---------IQPCYTASSSKGNVMVCFSP-------DDHYLLGKGSGTSMFVQSLR-GDP-------FRDFNMSILAAYT  683 (721)
Q Consensus       628 ---------~~~~~~~~~~~~~vsl~fSp-------dg~~Lasgs~Dg~I~VWDl~-g~~-------l~~~~~~V~~v~f  683 (721)
                               ..+.+.+..|..+..+.|-.       .|.++++.-..+.|....+. +..       +..+...+..+++
T Consensus       234 ~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~  313 (331)
T PF07995_consen  234 GDAPSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQ  313 (331)
T ss_dssp             CTGSS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEE
T ss_pred             ccccCCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEE
Confidence                     12445566666666666653       45677766666677766665 222       2233447899999


Q ss_pred             CCCCCcccccccEEEEecCC
Q 004969          684 RPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       684 sP~~~~~~v~v~lLASgs~~  703 (721)
                      .|++       .+.++-+..
T Consensus       314 ~pDG-------~Lyv~~d~~  326 (331)
T PF07995_consen  314 GPDG-------ALYVSDDSD  326 (331)
T ss_dssp             ETTS-------EEEEEE-TT
T ss_pred             cCCC-------eEEEEECCC
Confidence            9999       888876643

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=90.10  E-value=34  Score=37.76  Aligned_cols=150  Identities=14%  Similarity=0.111  Sum_probs=79.7

Q ss_pred             CeEEEEEeCCCCCEEEEEE-----------CCC-eEEEEECCC--CeE--EEEeecCCCCCCeEEEEEeeCCCCEEEEEe
Q 004969          455 RPRQFEYHPSISCLMVFGT-----------LDG-EIVVVNHEN--ENI--VSYIPSFGAMNSVLGLCWLKKYPSKLIAGS  518 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs-----------~DG-~I~IWdl~t--g~~--i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs  518 (721)
                      .++.|+|.+ +|+++++-.           ..+ .|.+++-.+  |..  ...+.  .......++++. +++  |+.++
T Consensus        15 ~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa--~~l~~p~Gi~~~-~~G--lyV~~   88 (367)
T TIGR02604        15 NPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA--EELSMVTGLAVA-VGG--VYVAT   88 (367)
T ss_pred             CCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee--cCCCCccceeEe-cCC--EEEeC
Confidence            488999999 888877643           223 787776543  332  22332  223456788886 455  44445


Q ss_pred             CCCeEEEEEcCCCCCcc---ccc-ccCcceeEeccCCCeEEEEEecCCCEEEEEeCC-------------------CcEE
Q 004969          519 DNGSLKLYDIRHMPPSI---RGM-HYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS-------------------KNIA  575 (721)
Q Consensus       519 ~DGtVrIWDi~~~~~~~---~~~-~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D-------------------g~Ir  575 (721)
                      .....++.|.......-   ..+ .+... ....+......+.|.|++...++.+..                   |.|.
T Consensus        89 ~~~i~~~~d~~gdg~ad~~~~~l~~~~~~-~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~  167 (367)
T TIGR02604        89 PPDILFLRDKDGDDKADGEREVLLSGFGG-QINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLF  167 (367)
T ss_pred             CCeEEEEeCCCCCCCCCCccEEEEEccCC-CCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEE
Confidence            55444454654321100   000 00000 000012336788898888776665521                   3455


Q ss_pred             EEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969          576 LYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF  614 (721)
Q Consensus       576 lWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~  614 (721)
                      -+|...++. ..+.. .-.....++|+|+| .++++-..
T Consensus       168 r~~pdg~~~-e~~a~-G~rnp~Gl~~d~~G-~l~~tdn~  203 (367)
T TIGR02604       168 RYNPDGGKL-RVVAH-GFQNPYGHSVDSWG-DVFFCDND  203 (367)
T ss_pred             EEecCCCeE-EEEec-CcCCCccceECCCC-CEEEEccC
Confidence            566654443 33332 22345689999998 67766443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=90.09  E-value=0.17  Score=54.33  Aligned_cols=109  Identities=23%  Similarity=0.244  Sum_probs=61.5

Q ss_pred             cceEeeccCCchhhHHHHHh---hcCCccceEeeccccccc---------------ccccccccceeeEEeccccccccc
Q 004969          101 KLRVVDLHDSSFGKDFIRNL---SQRGLMCEVLNLRSSRFR---------------KLNMIGEFKRIHTLNLDYSTSLTS  162 (721)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~l~~~~~~~~~~  162 (721)
                      ||+++||.||-||-+++|.|   -..-.+=|-|.|.++-+-               +.+-+|.=++|++++.. .|++..
T Consensus        93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~-rNrlen  171 (382)
T KOG1909|consen   93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG-RNRLEN  171 (382)
T ss_pred             ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee-cccccc
Confidence            99999999999999988843   222222233444333221               23333333444444433 333322


Q ss_pred             cc--------------------------------ccccccccccchhccccccchhhhH--HHHHhhcCCcchhhcccee
Q 004969          163 FK--------------------------------EDCFSCMPNLICLSMCETRVGNLWT--TIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       163 ~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  208 (721)
                      .+                                .--|.-+|+|+.|.|-+|--.-.=.  -.-||+-+|.|+||+|..|
T Consensus       172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc  251 (382)
T KOG1909|consen  172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC  251 (382)
T ss_pred             ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence            11                                1235566888888888764331100  0236788899999999888


Q ss_pred             ee
Q 004969          209 LC  210 (721)
Q Consensus       209 ~~  210 (721)
                      +=
T Consensus       252 ll  253 (382)
T KOG1909|consen  252 LL  253 (382)
T ss_pred             cc
Confidence            74

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=89.82  E-value=32  Score=36.98  Aligned_cols=203  Identities=11%  Similarity=0.124  Sum_probs=109.9

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECC------CC-eEEEEeecCC---CCCCeEEEEEeeCC-----------CCEE
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHE------NE-NIVSYIPSFG---AMNSVLGLCWLKKY-----------PSKL  514 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~------tg-~~i~~l~~~~---H~~~V~sl~fsp~d-----------~~~L  514 (721)
                      .+.|+++| .+.+-++....+...+||..      .. ..+-+++...   .....+.+.|+...           ...+
T Consensus        25 ~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        25 AWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             cceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            78899999 77888888888999999986      12 2333443211   23567888887211           1236


Q ss_pred             EEEeCCCeEEEEEcCCCCCcccccccCcceeEeccC--CCe-EEEEEe--cCCCEEEEEe-CCCcEEEEECCCCcEEEEE
Q 004969          515 IAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEF--DQL-TSVHVN--SMDELFLASG-YSKNIALYDINSGRRLQVF  588 (721)
Q Consensus       515 aSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~--~~V-~sv~~s--p~~~~lls~g-~Dg~IrlWDl~s~~~v~~l  588 (721)
                      +.+++||+|.-|.-.-......     ...+.+...  ..| ..+++.  ..++.++++. ..++|.+||-.-.+..  +
T Consensus       104 if~tEdGTisaW~p~v~~t~~~-----~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~--~  176 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMT-----RAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPP--L  176 (336)
T ss_pred             EEEeCCceEEeecCcCCccccc-----ccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccccc--C
Confidence            7789999999998543222000     011111111  112 234443  3356676665 4789999986533221  1


Q ss_pred             ccccCCC-------------------eEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEec--
Q 004969          589 ADMHKEH-------------------INVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSP--  647 (721)
Q Consensus       589 ~~~h~~~-------------------V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSp--  647 (721)
                      .+....+                   |+-..-.+++ +-=+.|..-|.|-+||+...-.+....-..-..+..++..|  
T Consensus       177 ~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~-~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~  255 (336)
T TIGR03118       177 PGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADR-NDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPES  255 (336)
T ss_pred             CCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcc-cccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhh
Confidence            1111111                   1111112222 12223334578999998864322221111112233455543  


Q ss_pred             ----CCCEEEEEeCCCcEEEEEcC
Q 004969          648 ----DDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       648 ----dg~~Lasgs~Dg~I~VWDl~  667 (721)
                          .|..|+.--.||+|..||..
T Consensus       256 FG~~sg~lLVGNFGDG~InaFD~~  279 (336)
T TIGR03118       256 FGSLSGALLVGNFGDGTINAYDPQ  279 (336)
T ss_pred             hCCCCCCeEEeecCCceeEEecCC
Confidence                56778776779999999975

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.78  E-value=5.3  Score=42.13  Aligned_cols=112  Identities=13%  Similarity=0.100  Sum_probs=74.1

Q ss_pred             CcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCc-EEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCC-
Q 004969          582 GRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQD-VKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSG-  658 (721)
Q Consensus       582 ~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~Dgt-IrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~D-  658 (721)
                      |+.+....  -......|+|+|..+.-++.+-.-|+ ..++|........+..-....... --.|||||++|++.-.| 
T Consensus        58 Gk~v~~~~--lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndf  135 (366)
T COG3490          58 GKIVFATA--LPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDF  135 (366)
T ss_pred             Cceeeeee--cccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCC
Confidence            55554443  33455678899988777888887777 568998876432222211111112 35799999999987543 


Q ss_pred             ----CcEEEEEcCCC-----cccccccCeEEEEECCCCCcccccccEEEEecC
Q 004969          659 ----TSMFVQSLRGD-----PFRDFNMSILAAYTRPSSKSEIVKVNLLASTDH  702 (721)
Q Consensus       659 ----g~I~VWDl~g~-----~l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~  702 (721)
                          |.|=|||.+.+     .+.+|......+.|.+++       ..++.+.+
T Consensus       136 d~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DG-------rtlvvanG  181 (366)
T COG3490         136 DPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADG-------RTLVVANG  181 (366)
T ss_pred             CCCCceEEEEecccccceecccccCCcCcceeEEecCC-------cEEEEeCC
Confidence                57889998722     355666677888999999       66666555

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=89.27  E-value=0.84  Score=34.88  Aligned_cols=34  Identities=9%  Similarity=0.211  Sum_probs=29.6

Q ss_pred             CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEE
Q 004969          551 DQLTSVHVNSMDELFLASGYSKNIALYDINSGRRL  585 (721)
Q Consensus       551 ~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v  585 (721)
                      ..|..++|+|..+.++.+..+|.|.+|.+ +++.+
T Consensus        12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri   45 (47)
T PF12894_consen   12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI   45 (47)
T ss_pred             CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence            45899999999999999999999999998 55543

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=89.26  E-value=14  Score=41.46  Aligned_cols=119  Identities=14%  Similarity=0.183  Sum_probs=63.0

Q ss_pred             eEEEEEeCCCCCEEEEEE--------------------CCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCC--E
Q 004969          456 PRQFEYHPSISCLMVFGT--------------------LDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPS--K  513 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs--------------------~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~--~  513 (721)
                      -+.+-|.| ..+.++|..                    ...++.+||+.+.+.++++..-........|.|. .++.  +
T Consensus       183 gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRfl-H~P~~~~  260 (461)
T PF05694_consen  183 GYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFL-HDPDANY  260 (461)
T ss_dssp             ---EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE--SSTT--E
T ss_pred             CCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEec-CCCCccc
Confidence            45577777 666666654                    3578999999999999999873333457788886 3332  2


Q ss_pred             -EEEEeCCCeEEEE-EcCCCCCcccccccCcceeEec----------c--------CCCeEEEEEecCCCEEEEEeC-CC
Q 004969          514 -LIAGSDNGSLKLY-DIRHMPPSIRGMHYGAGTVTFD----------E--------FDQLTSVHVNSMDELFLASGY-SK  572 (721)
Q Consensus       514 -LaSgs~DGtVrIW-Di~~~~~~~~~~~~~~~~~~~~----------~--------~~~V~sv~~sp~~~~lls~g~-Dg  572 (721)
                       ++.+...++|-.| ..+.+.-.      ...++...          .        ..-|+.+.++.++.++..+.. +|
T Consensus       261 gFvg~aLss~i~~~~k~~~g~W~------a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~G  334 (461)
T PF05694_consen  261 GFVGCALSSSIWRFYKDDDGEWA------AEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHG  334 (461)
T ss_dssp             EEEEEE--EEEEEEEE-ETTEEE------EEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTT
T ss_pred             eEEEEeccceEEEEEEcCCCCee------eeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCC
Confidence             3333344444333 32332211      01111111          0        133789999999999998885 89


Q ss_pred             cEEEEECCCC
Q 004969          573 NIALYDINSG  582 (721)
Q Consensus       573 ~IrlWDl~s~  582 (721)
                      .||-||+...
T Consensus       335 dvrqYDISDP  344 (461)
T PF05694_consen  335 DVRQYDISDP  344 (461)
T ss_dssp             EEEEEE-SST
T ss_pred             cEEEEecCCC
Confidence            9999999863

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=89.02  E-value=11  Score=44.66  Aligned_cols=101  Identities=15%  Similarity=0.199  Sum_probs=63.6

Q ss_pred             CEEEEEeC-CCcEEEEECCCCcEEEEEccccCCCeEEEEEc--CCCCcEEEEEECCCcEEEEECC-----C--CCceeE-
Q 004969          563 ELFLASGY-SKNIALYDINSGRRLQVFADMHKEHINVVKFS--NHSPSIFATSSFDQDVKLWDLR-----Q--KPIQPC-  631 (721)
Q Consensus       563 ~~lls~g~-Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fs--Pdg~~lLaSgs~DgtIrIWDlr-----s--~~~~~~-  631 (721)
                      +.++.... ...+.|||.+.+.....-.-...+.|..+.|.  |+| ..+++-|..+.|.+|--.     .  ....++ 
T Consensus        41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~  119 (631)
T PF12234_consen   41 KKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIR  119 (631)
T ss_pred             CcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEccchhhhcCCcccceeE
Confidence            44555554 45699999998875443321257889999886  677 567777778888888542     1  111122 


Q ss_pred             -EEecCCC-CeE-EEEEecCCCEEEEEeCCCcEEEEEc
Q 004969          632 -YTASSSK-GNV-MVCFSPDDHYLLGKGSGTSMFVQSL  666 (721)
Q Consensus       632 -~~~~~~~-~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl  666 (721)
                       ..+..++ .++ ...|.++|..++++  ++.++|+|-
T Consensus       120 ~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk  155 (631)
T PF12234_consen  120 KIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK  155 (631)
T ss_pred             EEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence             2222222 334 78999999887754  467888764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=88.95  E-value=5.3  Score=47.56  Aligned_cols=114  Identities=14%  Similarity=0.181  Sum_probs=71.6

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCCCccccc----------ccCcceeEeccCCCeEEEEEe--cCCCEEEEEeCCCcEEEE
Q 004969          510 YPSKLIAGSDNGSLKLYDIRHMPPSIRGM----------HYGAGTVTFDEFDQLTSVHVN--SMDELFLASGYSKNIALY  577 (721)
Q Consensus       510 d~~~LaSgs~DGtVrIWDi~~~~~~~~~~----------~~~~~~~~~~~~~~V~sv~~s--p~~~~lls~g~Dg~IrlW  577 (721)
                      +.+.|+.|.+||.|.+|.+++-...+...          ........+.....+++++++  .....||+++....|.||
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF  192 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF  192 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence            45689999999999999775311000000          001122344445678999998  667777777777777777


Q ss_pred             ECCCC--cEEEEEccccCCCeEEEEEcCCC--Cc---EEEEEECCCcEEEEEC
Q 004969          578 DINSG--RRLQVFADMHKEHINVVKFSNHS--PS---IFATSSFDQDVKLWDL  623 (721)
Q Consensus       578 Dl~s~--~~v~~l~~~h~~~V~sI~fsPdg--~~---lLaSgs~DgtIrIWDl  623 (721)
                      -....  +....-...|..-|.+|+|-++.  +.   .+++++-.|.+-+|++
T Consensus       193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            55431  11111011256678899998764  22   7778888999888887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=88.82  E-value=13  Score=38.35  Aligned_cols=102  Identities=17%  Similarity=0.180  Sum_probs=64.1

Q ss_pred             eEEEEEeeCCCCEEEEEeCCCeEEEEE--cCCCCCcccc-cccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 004969          501 VLGLCWLKKYPSKLIAGSDNGSLKLYD--IRHMPPSIRG-MHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALY  577 (721)
Q Consensus       501 V~sl~fsp~d~~~LaSgs~DGtVrIWD--i~~~~~~~~~-~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlW  577 (721)
                      -++++|......+.+.-+.+-+|.-||  ..++...-.. +..-.....+.+.. --.+++...|..++++-..++|...
T Consensus       160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~-PDGm~ID~eG~L~Va~~ng~~V~~~  238 (310)
T KOG4499|consen  160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLE-PDGMTIDTEGNLYVATFNGGTVQKV  238 (310)
T ss_pred             CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCC-CCcceEccCCcEEEEEecCcEEEEE
Confidence            357889744444556677888898888  5554431100 00000001111111 1234445577778887788999999


Q ss_pred             ECCCCcEEEEEccccCCCeEEEEEcCC
Q 004969          578 DINSGRRLQVFADMHKEHINVVKFSNH  604 (721)
Q Consensus       578 Dl~s~~~v~~l~~~h~~~V~sI~fsPd  604 (721)
                      |..+|+.+.++.- ....|++.+|--.
T Consensus       239 dp~tGK~L~eikl-Pt~qitsccFgGk  264 (310)
T KOG4499|consen  239 DPTTGKILLEIKL-PTPQITSCCFGGK  264 (310)
T ss_pred             CCCCCcEEEEEEc-CCCceEEEEecCC
Confidence            9999999999986 6889999999643

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=88.71  E-value=18  Score=37.77  Aligned_cols=131  Identities=12%  Similarity=0.094  Sum_probs=80.2

Q ss_pred             CeEEEEEecCCCEEEEEe--C-CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEE-CCCCC
Q 004969          552 QLTSVHVNSMDELFLASG--Y-SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWD-LRQKP  627 (721)
Q Consensus       552 ~V~sv~~sp~~~~lls~g--~-Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWD-lrs~~  627 (721)
                      .+.+.++++++..+++..  . ...++++.  .+.......  ....+..-.|++++ .+.+....+...+++. ..++.
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~--~g~~l~~PS~d~~g-~~W~v~~~~~~~~~~~~~~~g~   99 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVL--TGGSLTRPSWDPDG-WVWTVDDGSGGVRVVRDSASGT   99 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeec--cCCccccccccCCC-CEEEEEcCCCceEEEEecCCCc
Confidence            468889999999887776  2 23455554  333333332  22377888999998 6777766677777774 33333


Q ss_pred             ceeEE-EecCCC-CeEEEEEecCCCEEEEEe---CCCcEEEEEcC----CCc------cc---ccccCeEEEEECCCC
Q 004969          628 IQPCY-TASSSK-GNVMVCFSPDDHYLLGKG---SGTSMFVQSLR----GDP------FR---DFNMSILAAYTRPSS  687 (721)
Q Consensus       628 ~~~~~-~~~~~~-~~vsl~fSpdg~~Lasgs---~Dg~I~VWDl~----g~~------l~---~~~~~V~~v~fsP~~  687 (721)
                      ..+.. ...... .+..+.+||||..++...   .++.|+|=-+.    |.+      ..   .....+..+.|.+++
T Consensus       100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~  177 (253)
T PF10647_consen  100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS  177 (253)
T ss_pred             ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC
Confidence            22221 122222 344899999999887655   35677766543    311      11   113478899999998

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=88.56  E-value=0.2  Score=47.30  Aligned_cols=119  Identities=21%  Similarity=0.239  Sum_probs=94.3

Q ss_pred             CccccchHHHHHHHHHhcccceEeeccCCchhhHHHHHhhcCCccceEeeccccccccccc-ccccceeeEEeccccccc
Q 004969           82 TSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNM-IGEFKRIHTLNLDYSTSL  160 (721)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~  160 (721)
                      |+|-|---|-+--|-.-|+-|..++|+||.| |+|=..+.+.=..-..|||.+|.|+.+-- +.-.+-|..|||. .|++
T Consensus        35 ssc~lm~i~davy~l~~~~el~~i~ls~N~f-k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~-~N~l  112 (177)
T KOG4579|consen   35 SSCQLMYIADAVYMLSKGYELTKISLSDNGF-KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR-FNPL  112 (177)
T ss_pred             ccchhhHHHHHHHHHhCCceEEEEecccchh-hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc-cCcc
Confidence            6787664443334456689999999999988 66777777776677889999999987621 3467889999999 7899


Q ss_pred             ccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhc
Q 004969          161 TSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELR  204 (721)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (721)
                      ..+.+-.|. +-||..|..-+|.++.+=++ +--|-+|.|..|+
T Consensus       113 ~~~p~vi~~-L~~l~~Lds~~na~~eid~d-l~~s~~~al~~lg  154 (177)
T KOG4579|consen  113 NAEPRVIAP-LIKLDMLDSPENARAEIDVD-LFYSSLPALIKLG  154 (177)
T ss_pred             ccchHHHHH-HHhHHHhcCCCCccccCcHH-HhccccHHHHHhc
Confidence            999998888 99999999999999988666 5567777787774

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=88.55  E-value=50  Score=40.55  Aligned_cols=156  Identities=13%  Similarity=0.168  Sum_probs=100.8

Q ss_pred             cCeEEEEEeCCCCCEEEEEE----------CCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeE
Q 004969          454 FRPRQFEYHPSISCLMVFGT----------LDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSL  523 (721)
Q Consensus       454 ~~V~~lafsP~dg~~LasGs----------~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtV  523 (721)
                      ..+.+..|..+.+.++++|+          ..|.|.|+....+..+..+....-.+.+.++.-  .++.++|+  -...|
T Consensus       775 ~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~--fngkllA~--In~~v  850 (1096)
T KOG1897|consen  775 LSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE--FNGKLLAG--INQSV  850 (1096)
T ss_pred             eeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh--hCCeEEEe--cCcEE
Confidence            34666778884478888887          358899998887555554443334577777764  35555544  44689


Q ss_pred             EEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEE--ECCCCcEEEEEccccCCCeEEEEE
Q 004969          524 KLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALY--DINSGRRLQVFADMHKEHINVVKF  601 (721)
Q Consensus       524 rIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlW--Dl~s~~~v~~l~~~h~~~V~sI~f  601 (721)
                      ++|+..+++..         .....+..++..+...-.++.+++|.-=+++.+-  +...|.....-+.-+..+.+++.+
T Consensus       851 rLye~t~~~eL---------r~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtavei  921 (1096)
T KOG1897|consen  851 RLYEWTTEREL---------RIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEI  921 (1096)
T ss_pred             EEEEcccccee---------hhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEE
Confidence            99999886431         1122234566777777789999998866665554  444444444433347888999998


Q ss_pred             cCCCCcEEEEEECCCcEEEEECC
Q 004969          602 SNHSPSIFATSSFDQDVKLWDLR  624 (721)
Q Consensus       602 sPdg~~lLaSgs~DgtIrIWDlr  624 (721)
                      -.+.  .++.+..+|.+.+-...
T Consensus       922 l~~d--~ylgae~~gNlf~v~~d  942 (1096)
T KOG1897|consen  922 LDDD--TYLGAENSGNLFTVRKD  942 (1096)
T ss_pred             ecCc--eEEeecccccEEEEEec
Confidence            8665  55566667776665443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=88.53  E-value=0.1  Score=62.26  Aligned_cols=97  Identities=30%  Similarity=0.459  Sum_probs=72.0

Q ss_pred             ccceEeeccCC---chhhHHHHHhhcCCccceEeeccccccccccc-ccccceeeEEecccccccccccccccccccccc
Q 004969          100 QKLRVVDLHDS---SFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNM-IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLI  175 (721)
Q Consensus       100 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  175 (721)
                      .+|||+||.-|   +|---++++|.+    =+.|+|++|++..|-- +-...+||||... +|.|.+|+  =+...|.|+
T Consensus       383 ~hLKVLhLsyNrL~~fpas~~~kle~----LeeL~LSGNkL~~Lp~tva~~~~L~tL~ah-sN~l~~fP--e~~~l~qL~  455 (1081)
T KOG0618|consen  383 KHLKVLHLSYNRLNSFPASKLRKLEE----LEELNLSGNKLTTLPDTVANLGRLHTLRAH-SNQLLSFP--ELAQLPQLK  455 (1081)
T ss_pred             cceeeeeecccccccCCHHHHhchHH----hHHHhcccchhhhhhHHHHhhhhhHHHhhc-CCceeech--hhhhcCcce
Confidence            37888888876   455667777665    3668888888888763 2377889999988 99999998  478888999


Q ss_pred             hhccccccchhhhHHHHHhhcCCcchhhcc
Q 004969          176 CLSMCETRVGNLWTTIAALSKLPSLAELRF  205 (721)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (721)
                      +|.+.-|++.+. |--+|+-+ |.|++|.|
T Consensus       456 ~lDlS~N~L~~~-~l~~~~p~-p~LkyLdl  483 (1081)
T KOG0618|consen  456 VLDLSCNNLSEV-TLPEALPS-PNLKYLDL  483 (1081)
T ss_pred             EEecccchhhhh-hhhhhCCC-cccceeec
Confidence            999998888876 33333333 67888854

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=88.05  E-value=48  Score=36.85  Aligned_cols=201  Identities=13%  Similarity=0.180  Sum_probs=107.7

Q ss_pred             EEEeCC--CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEe---eCCCCE--EEEEe-CC---CeEEEEE
Q 004969          459 FEYHPS--ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWL---KKYPSK--LIAGS-DN---GSLKLYD  527 (721)
Q Consensus       459 lafsP~--dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fs---p~d~~~--LaSgs-~D---GtVrIWD  527 (721)
                      |-.+|.  ...+++....++-+.+||+. |+.+..+.. +   ..+.|..-   +-.+..  |+.++ .+   .+|++|.
T Consensus        59 IWvnp~dp~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~-G---r~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~  133 (381)
T PF02333_consen   59 IWVNPADPAKSLIIGTDKKGGLYVYDLD-GKELQSLPV-G---RPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFR  133 (381)
T ss_dssp             EE--SS-GGG-EEEEEETTTEEEEEETT-S-EEEEE-S-S----EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEE
T ss_pred             EecCCCCcccceEEEEeCCCCEEEEcCC-CcEEEeecC-C---CcceeeeecceecCCceEEEEEEecCcCCCCeEEEEE
Confidence            445543  45678888888999999998 667776652 3   33333321   122332  44444 32   4799998


Q ss_pred             cCCCCCcccccccCcceeEeccCCCeEEEEEe--cC-CC-EEEEEeCCCcEEEEECC---CC----cEEEEEccccCCCe
Q 004969          528 IRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVN--SM-DE-LFLASGYSKNIALYDIN---SG----RRLQVFADMHKEHI  596 (721)
Q Consensus       528 i~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s--p~-~~-~lls~g~Dg~IrlWDl~---s~----~~v~~l~~~h~~~V  596 (721)
                      +......+.........+ ......++.+++-  +. +. +.++.+.+|.+.-|-+.   .+    +.++.|.  -...+
T Consensus       134 id~~~g~L~~v~~~~~p~-~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~--~~sQ~  210 (381)
T PF02333_consen  134 IDPDTGELTDVTDPAAPI-ATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK--VGSQP  210 (381)
T ss_dssp             EETTTTEEEE-CBTTC-E-E-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE---SS-E
T ss_pred             ecCCCCcceEcCCCCccc-ccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec--CCCcc
Confidence            875333233222211111 1222456777774  32 33 45556678887777664   33    4678887  45578


Q ss_pred             EEEEEcCCCCcEEEEEECCCcEEEEECCCCC---ceeEEEecC--CCCeE-EEE--EecCC-CEEEEEe-CCCcEEEEEc
Q 004969          597 NVVKFSNHSPSIFATSSFDQDVKLWDLRQKP---IQPCYTASS--SKGNV-MVC--FSPDD-HYLLGKG-SGTSMFVQSL  666 (721)
Q Consensus       597 ~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~---~~~~~~~~~--~~~~v-sl~--fSpdg-~~Lasgs-~Dg~I~VWDl  666 (721)
                      ..+...... ..|..|-.+.-|.-|+..-..   ...+....+  -...+ .++  ..++| .||++++ .+++..||+.
T Consensus       211 EGCVVDDe~-g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r  289 (381)
T PF02333_consen  211 EGCVVDDET-GRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDR  289 (381)
T ss_dssp             EEEEEETTT-TEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEES
T ss_pred             eEEEEeccc-CCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEec
Confidence            888888776 588889888878778776321   122222222  12223 333  34454 3666555 4668999998


Q ss_pred             CC
Q 004969          667 RG  668 (721)
Q Consensus       667 ~g  668 (721)
                      ++
T Consensus       290 ~~  291 (381)
T PF02333_consen  290 EG  291 (381)
T ss_dssp             ST
T ss_pred             CC
Confidence            85

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=87.82  E-value=50  Score=36.74  Aligned_cols=177  Identities=16%  Similarity=0.192  Sum_probs=82.8

Q ss_pred             EEeCCCCCEEEEEEC-C--CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCccc
Q 004969          460 EYHPSISCLMVFGTL-D--GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIR  536 (721)
Q Consensus       460 afsP~dg~~LasGs~-D--G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~  536 (721)
                      .|.+ +|+.|+.++. |  ..+.+.|+.+++..+.....+  ....+..++ ++.+.++-......|+-.|+.+.+..  
T Consensus        42 ~ft~-dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g--~~~~g~~~s-~~~~~~~Yv~~~~~l~~vdL~T~e~~--  115 (386)
T PF14583_consen   42 CFTD-DGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPG--DNTFGGFLS-PDDRALYYVKNGRSLRRVDLDTLEER--  115 (386)
T ss_dssp             -B-T-TS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS---B-TTT-EE--TTSSEEEEEETTTEEEEEETTT--EE--
T ss_pred             CcCC-CCCEEEEEeccCCCcceEEEEcccCEEEECccCCC--CCccceEEe-cCCCeEEEEECCCeEEEEECCcCcEE--
Confidence            4666 6766555554 4  467777899888776554322  222234445 45566655555568888899885531  


Q ss_pred             ccccCcceeEecc-CCCeEEEEE--ecCCCEEEEEe-----------------------CCCcEEEEECCCCcEEEEEcc
Q 004969          537 GMHYGAGTVTFDE-FDQLTSVHV--NSMDELFLASG-----------------------YSKNIALYDINSGRRLQVFAD  590 (721)
Q Consensus       537 ~~~~~~~~~~~~~-~~~V~sv~~--sp~~~~lls~g-----------------------~Dg~IrlWDl~s~~~v~~l~~  590 (721)
                              ..+.- ...+....|  +.++.. +++.                       -...|.-.|+.+|+....+. 
T Consensus       116 --------~vy~~p~~~~g~gt~v~n~d~t~-~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-  185 (386)
T PF14583_consen  116 --------VVYEVPDDWKGYGTWVANSDCTK-LVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-  185 (386)
T ss_dssp             --------EEEE--TTEEEEEEEEE-TTSSE-EEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-
T ss_pred             --------EEEECCcccccccceeeCCCccE-EEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-
Confidence                    11111 111222223  222222 2221                       12346667888888766666 


Q ss_pred             ccCCCeEEEEEcCCCCcEEEEEEC---CCc-EEEEECCC--CCceeEEEecCCCCeE-EEEEecCCCEEEE
Q 004969          591 MHKEHINVVKFSNHSPSIFATSSF---DQD-VKLWDLRQ--KPIQPCYTASSSKGNV-MVCFSPDDHYLLG  654 (721)
Q Consensus       591 ~h~~~V~sI~fsPdg~~lLaSgs~---Dgt-IrIWDlrs--~~~~~~~~~~~~~~~v-sl~fSpdg~~Las  654 (721)
                       -...+..+.|+|..+.+++-|-.   |.. -|||-+++  ....++.... ....+ -=-|.|||..|.-
T Consensus       186 -~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEfw~~DG~~i~y  254 (386)
T PF14583_consen  186 -DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGHEFWVPDGSTIWY  254 (386)
T ss_dssp             -ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-EEE
T ss_pred             -cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-CCcccccccccCCCCEEEE
Confidence             56788999999999777776654   232 36776654  2222232211 11222 3568899986653

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=87.72  E-value=0.13  Score=58.79  Aligned_cols=54  Identities=31%  Similarity=0.483  Sum_probs=48.5

Q ss_pred             Eeeccccccccccc-ccccceeeEEecccccccccccccccccccccchhccccccc
Q 004969          129 VLNLRSSRFRKLNM-IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRV  184 (721)
Q Consensus       129 ~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (721)
                      -|||++|.|.+|+| .|+.-+|+||||+ -|-+|.++ +|---+|+|++|...+|..
T Consensus       249 rLNLS~N~iteL~~~~~~W~~lEtLNlS-rNQLt~LP-~avcKL~kL~kLy~n~NkL  303 (1255)
T KOG0444|consen  249 RLNLSGNKITELNMTEGEWENLETLNLS-RNQLTVLP-DAVCKLTKLTKLYANNNKL  303 (1255)
T ss_pred             eeccCcCceeeeeccHHHHhhhhhhccc-cchhccch-HHHhhhHHHHHHHhccCcc
Confidence            48999999999999 4699999999999 89999996 6778899999999999864

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.70  E-value=4.3  Score=49.82  Aligned_cols=138  Identities=8%  Similarity=0.043  Sum_probs=82.2

Q ss_pred             EEEEeCCCeEEEEEcCCCCCccc--ccccCcceeEeccCCCeEEEEEecCCCE-EEEEeCCCcEEEEECCCCc-EEEEEc
Q 004969          514 LIAGSDNGSLKLYDIRHMPPSIR--GMHYGAGTVTFDEFDQLTSVHVNSMDEL-FLASGYSKNIALYDINSGR-RLQVFA  589 (721)
Q Consensus       514 LaSgs~DGtVrIWDi~~~~~~~~--~~~~~~~~~~~~~~~~V~sv~~sp~~~~-lls~g~Dg~IrlWDl~s~~-~v~~l~  589 (721)
                      ++..+.+-.|..||+++-.....  ...-......+.......++.|+|.-.. .++...|+.|++.-+.... .+..+.
T Consensus       117 v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p  196 (1405)
T KOG3630|consen  117 VVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP  196 (1405)
T ss_pred             EEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC
Confidence            33444556899999986432110  0000011122223334677888887544 4445578999988776432 233333


Q ss_pred             cccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEec--CCCCeEEEEEecCCCEEEE
Q 004969          590 DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTAS--SSKGNVMVCFSPDDHYLLG  654 (721)
Q Consensus       590 ~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~--~~~~~vsl~fSpdg~~Las  654 (721)
                        ....+++++|+|.| ..++.|-..|++.-|-..-.....+...+  ....+.+++|-....++++
T Consensus       197 --~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  197 --VTNSQTAVLWSPRG-KQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             --cccceeeEEecccc-ceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence              56788999999999 79999999999988876543111111111  1122338999887777775

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=87.63  E-value=35  Score=38.53  Aligned_cols=150  Identities=15%  Similarity=0.202  Sum_probs=89.5

Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEec----CCCEEEEEeCCCcEEEEECCC--C
Q 004969          509 KYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNS----MDELFLASGYSKNIALYDINS--G  582 (721)
Q Consensus       509 ~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp----~~~~lls~g~Dg~IrlWDl~s--~  582 (721)
                      .+.+.+++||..|.++||+...+....     ..-....+-..+|..+..-.    .....++.=.-..+.+|.+..  |
T Consensus        35 ~~~d~IivGS~~G~LrIy~P~~~~~~~-----~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g  109 (418)
T PF14727_consen   35 SGSDKIIVGSYSGILRIYDPSGNEFQP-----EDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDG  109 (418)
T ss_pred             CCccEEEEeccccEEEEEccCCCCCCC-----ccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCC
Confidence            345799999999999999996533210     11123334445666665522    233344445567788887732  1


Q ss_pred             c-------EEEEEcccc--CCCeEEEEEcCCC----CcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCC
Q 004969          583 R-------RLQVFADMH--KEHINVVKFSNHS----PSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDD  649 (721)
Q Consensus       583 ~-------~v~~l~~~h--~~~V~sI~fsPdg----~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg  649 (721)
                      .       .+..... |  ......++.-|-|    ...+.+-+.||.+.+|+-+.-..  ...++..--+-.++|.+..
T Consensus       110 ~~~~g~~~~L~~~ye-h~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f--~~~lp~~llPgPl~Y~~~t  186 (418)
T PF14727_consen  110 TVEHGNQYQLELIYE-HSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAF--SRFLPDFLLPGPLCYCPRT  186 (418)
T ss_pred             CcccCcEEEEEEEEE-EecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEE--EEEcCCCCCCcCeEEeecC
Confidence            1       1111111 3  2344455555544    36788899999999999876421  2233332222257888888


Q ss_pred             CEEEEEeCCCcEEEEEc
Q 004969          650 HYLLGKGSGTSMFVQSL  666 (721)
Q Consensus       650 ~~Lasgs~Dg~I~VWDl  666 (721)
                      +.+++++.+..+.-|..
T Consensus       187 Dsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  187 DSFVTASSSWTLECYKY  203 (418)
T ss_pred             CEEEEecCceeEEEecH
Confidence            88888888877777764

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=87.59  E-value=0.31  Score=59.89  Aligned_cols=101  Identities=25%  Similarity=0.301  Sum_probs=73.4

Q ss_pred             ccceEeeccCCchhhH---HHHHhhcCCccceEeeccccccccc-ccccccceeeEEecccccccccccccccccccccc
Q 004969          100 QKLRVVDLHDSSFGKD---FIRNLSQRGLMCEVLNLRSSRFRKL-NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLI  175 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  175 (721)
                      .+|||.||+.+.=|..   ++.+|.+=.    -|||+.+.++.| .-+++|+.|.+|||+|...+.++ .+...-|++|+
T Consensus       571 ~~LrVLDLs~~~~l~~LP~~I~~Li~Lr----yL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr  645 (889)
T KOG4658|consen  571 PLLRVLDLSGNSSLSKLPSSIGELVHLR----YLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLR  645 (889)
T ss_pred             cceEEEECCCCCccCcCChHHhhhhhhh----cccccCCCccccchHHHHHHhhheeccccccccccc-cchhhhccccc
Confidence            5799999994443333   466666543    589999988865 23579999999999988888887 77888899999


Q ss_pred             hhccccccchhhhHHHHHhhcCCcchhhcc
Q 004969          176 CLSMCETRVGNLWTTIAALSKLPSLAELRF  205 (721)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (721)
                      +|.+-...+.+==-.+.-|-+|..|+.|.+
T Consensus       646 ~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  646 VLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             EEEeeccccccchhhHHhhhcccchhhhee
Confidence            999887774432233455677777777743

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=87.12  E-value=22  Score=39.31  Aligned_cols=100  Identities=10%  Similarity=0.098  Sum_probs=55.9

Q ss_pred             CeEEEEEecCCCEEEEEeCCCcEEEEECCCC-----cE--E-EEEccc---cCCCeEEEEEcCCCCcEEEEEECC-----
Q 004969          552 QLTSVHVNSMDELFLASGYSKNIALYDINSG-----RR--L-QVFADM---HKEHINVVKFSNHSPSIFATSSFD-----  615 (721)
Q Consensus       552 ~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~-----~~--v-~~l~~~---h~~~V~sI~fsPdg~~lLaSgs~D-----  615 (721)
                      ....+++.+++  ++++......++.|....     +.  + ..+...   +......++|.|+| .+.++-+..     
T Consensus        73 ~p~Gi~~~~~G--lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G~~~~~~~  149 (367)
T TIGR02604        73 MVTGLAVAVGG--VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHGNTLASKV  149 (367)
T ss_pred             CccceeEecCC--EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC-CEEEecccCCCcee
Confidence            35778887766  555554443444455321     21  1 122221   13447789999999 555543311     


Q ss_pred             --------------CcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEe
Q 004969          616 --------------QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKG  656 (721)
Q Consensus       616 --------------gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs  656 (721)
                                    |.|.-+|..++...  ....+...+..++|+|+|+++++-.
T Consensus       150 ~~~~~~~~~~~~~~g~i~r~~pdg~~~e--~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       150 TRPGTSDESRQGLGGGLFRYNPDGGKLR--VVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             ccCCCccCcccccCceEEEEecCCCeEE--EEecCcCCCccceECCCCCEEEEcc
Confidence                          34555566554332  2234555566899999999887644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=87.10  E-value=18  Score=39.04  Aligned_cols=151  Identities=17%  Similarity=0.213  Sum_probs=88.3

Q ss_pred             CeEEEEEeCCCCCEEEEEEC-----------CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEe-CCCe
Q 004969          455 RPRQFEYHPSISCLMVFGTL-----------DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS-DNGS  522 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~-----------DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs-~DGt  522 (721)
                      +...+...| +|.+.++...           -|.|+.++. .+..++.+.  .+-..-++|+|+ ++++.|+.+- ..+.
T Consensus       112 r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~--~~~~~~NGla~S-pDg~tly~aDT~~~~  186 (307)
T COG3386         112 RPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLD--DDLTIPNGLAFS-PDGKTLYVADTPANR  186 (307)
T ss_pred             CCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeec--CcEEecCceEEC-CCCCEEEEEeCCCCe
Confidence            466677788 6776655333           143444443 455555554  444556789999 5666655554 4578


Q ss_pred             EEEEEcCCCCCcccccccCcceeEec-cCCCeEEEEEecCCCEEEEEeCCC-cEEEEECCCCcEEEEEccccCCCeEEEE
Q 004969          523 LKLYDIRHMPPSIRGMHYGAGTVTFD-EFDQLTSVHVNSMDELFLASGYSK-NIALYDINSGRRLQVFADMHKEHINVVK  600 (721)
Q Consensus       523 VrIWDi~~~~~~~~~~~~~~~~~~~~-~~~~V~sv~~sp~~~~lls~g~Dg-~IrlWDl~s~~~v~~l~~~h~~~V~sI~  600 (721)
                      |.-|++.......   .+....+.+. ..+..-.++...+|...+++..+| .|..|+.. |+.+..+.- ....+++++
T Consensus       187 i~r~~~d~~~g~~---~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l-P~~~~t~~~  261 (307)
T COG3386         187 IHRYDLDPATGPI---GGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL-PVKRPTNPA  261 (307)
T ss_pred             EEEEecCcccCcc---CCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEEC-CCCCCccce
Confidence            8888876311100   0111122221 223355667767777776555554 89999998 999888875 447788888


Q ss_pred             EcC-CCCcEEEEEECC
Q 004969          601 FSN-HSPSIFATSSFD  615 (721)
Q Consensus       601 fsP-dg~~lLaSgs~D  615 (721)
                      |-- +...+++|+...
T Consensus       262 FgG~~~~~L~iTs~~~  277 (307)
T COG3386         262 FGGPDLNTLYITSARS  277 (307)
T ss_pred             EeCCCcCEEEEEecCC
Confidence            853 333455555443

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=87.09  E-value=44  Score=35.27  Aligned_cols=190  Identities=12%  Similarity=0.033  Sum_probs=100.0

Q ss_pred             EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCC--eEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEE
Q 004969          488 IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG--SLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELF  565 (721)
Q Consensus       488 ~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DG--tVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~l  565 (721)
                      .+..++. ....-..++.|. .++.++-|.|.-|  .|+.+|+.+++....        ..+...---..++.  -++.+
T Consensus        35 vv~~ypH-d~~aFTQGL~~~-~~g~LyESTG~yG~S~l~~~d~~tg~~~~~--------~~l~~~~FgEGit~--~~d~l  102 (264)
T PF05096_consen   35 VVETYPH-DPTAFTQGLEFL-DDGTLYESTGLYGQSSLRKVDLETGKVLQS--------VPLPPRYFGEGITI--LGDKL  102 (264)
T ss_dssp             EEEEEE---TT-EEEEEEEE-ETTEEEEEECSTTEEEEEEEETTTSSEEEE--------EE-TTT--EEEEEE--ETTEE
T ss_pred             EEEECCC-CCcccCccEEec-CCCEEEEeCCCCCcEEEEEEECCCCcEEEE--------EECCccccceeEEE--ECCEE
Confidence            4555542 223446688885 4677778887766  799999998764211        11111111123333  24555


Q ss_pred             EEEe-CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE---
Q 004969          566 LASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV---  641 (721)
Q Consensus       566 ls~g-~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v---  641 (721)
                      ..-. .++...+||..+-+.+.++.  ..+.=..++.  ++ ..++.+.....++++|..+-+............++   
T Consensus       103 ~qLTWk~~~~f~yd~~tl~~~~~~~--y~~EGWGLt~--dg-~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~L  177 (264)
T PF05096_consen  103 YQLTWKEGTGFVYDPNTLKKIGTFP--YPGEGWGLTS--DG-KRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNL  177 (264)
T ss_dssp             EEEESSSSEEEEEETTTTEEEEEEE---SSS--EEEE--CS-SCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---E
T ss_pred             EEEEecCCeEEEEccccceEEEEEe--cCCcceEEEc--CC-CEEEEECCccceEEECCcccceEEEEEEEECCEECCCc
Confidence            5555 57999999999999999887  4455567773  55 34555555677999998876544443333333332   


Q ss_pred             -EEEEecCCCEEEEEe----------CCCcE-EEEEcCCC--cc-----c-ccccCeEEEEECCCCCcccccccEEEEec
Q 004969          642 -MVCFSPDDHYLLGKG----------SGTSM-FVQSLRGD--PF-----R-DFNMSILAAYTRPSSKSEIVKVNLLASTD  701 (721)
Q Consensus       642 -sl~fSpdg~~Lasgs----------~Dg~I-~VWDl~g~--~l-----~-~~~~~V~~v~fsP~~~~~~v~v~lLASgs  701 (721)
                       -+.|- +|...|=.-          ..|.| .++|+.+-  ..     + +-....+.++|.|...      .+++||-
T Consensus       178 NELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~------~l~vTGK  250 (264)
T PF05096_consen  178 NELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETD------RLFVTGK  250 (264)
T ss_dssp             EEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTT------EEEEEET
T ss_pred             EeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCC------EEEEEeC
Confidence             24443 343333222          23333 34444310  00     0 0124578899998874      6777764

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=87.08  E-value=23  Score=38.81  Aligned_cols=148  Identities=17%  Similarity=0.196  Sum_probs=76.7

Q ss_pred             CCCeEEEEEeeCCCCEEEE--EeCC---CeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEe-cCCCEEEEEe-C
Q 004969          498 MNSVLGLCWLKKYPSKLIA--GSDN---GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVN-SMDELFLASG-Y  570 (721)
Q Consensus       498 ~~~V~sl~fsp~d~~~LaS--gs~D---GtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s-p~~~~lls~g-~  570 (721)
                      ..-+..+.|. +++..|+.  ...+   ..+.+.|..++............-+     ..-....+. +++..++..+ .
T Consensus       183 ~~yl~~v~W~-~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv-----~~~~~~~~~~~~~~~~l~~s~~  256 (353)
T PF00930_consen  183 DYYLTRVGWS-PDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWV-----DVYDPPHFLGPDGNEFLWISER  256 (353)
T ss_dssp             SEEEEEEEEE-ETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSS-----SSSSEEEE-TTTSSEEEEEEET
T ss_pred             ccCcccceec-CCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcce-----eeecccccccCCCCEEEEEEEc
Confidence            3457788887 45552333  2222   3456667766544221111111000     112344443 6666665554 5


Q ss_pred             CCc--EEEEECCCCcEEEEEccccCCCeE-EEEEcCCCCcEEEEEECCC----cEEEEECC-CCCceeEEEecCCCCe-E
Q 004969          571 SKN--IALYDINSGRRLQVFADMHKEHIN-VVKFSNHSPSIFATSSFDQ----DVKLWDLR-QKPIQPCYTASSSKGN-V  641 (721)
Q Consensus       571 Dg~--IrlWDl~s~~~v~~l~~~h~~~V~-sI~fsPdg~~lLaSgs~Dg----tIrIWDlr-s~~~~~~~~~~~~~~~-v  641 (721)
                      ||.  |.+++...+. .+.+.. ..-.|. -+.+++++..+..++..++    .+..-++. .+.   ...+....+. .
T Consensus       257 ~G~~hly~~~~~~~~-~~~lT~-G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~---~~~LT~~~~~~~  331 (353)
T PF00930_consen  257 DGYRHLYLYDLDGGK-PRQLTS-GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE---PKCLTCEDGDHY  331 (353)
T ss_dssp             TSSEEEEEEETTSSE-EEESS--SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE---EEESSTTSSTTE
T ss_pred             CCCcEEEEEcccccc-eecccc-CceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC---eEeccCCCCCce
Confidence            664  5566666555 334443 445564 4778888866777777633    44445555 432   2333333333 3


Q ss_pred             EEEEecCCCEEEEEe
Q 004969          642 MVCFSPDDHYLLGKG  656 (721)
Q Consensus       642 sl~fSpdg~~Lasgs  656 (721)
                      .+.|||+|++++...
T Consensus       332 ~~~~Spdg~y~v~~~  346 (353)
T PF00930_consen  332 SASFSPDGKYYVDTY  346 (353)
T ss_dssp             EEEE-TTSSEEEEEE
T ss_pred             EEEECCCCCEEEEEE
Confidence            799999999988654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PLN03150 hypothetical protein; Provisional

Probab=86.87  E-value=0.47  Score=56.31  Aligned_cols=82  Identities=13%  Similarity=0.239  Sum_probs=58.8

Q ss_pred             ceEeeccCCchhhHHHHHhhcCCccceEeeccccccc-ccc-cccccceeeEEecccccccccccccccccccccchhcc
Q 004969          102 LRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFR-KLN-MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM  179 (721)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (721)
                      ++.++|.++.+.-..-.+++. =-.=+.|+|++|.|. .+- .++.+.+|++|+|. .|+++..-...|..|++|+.|.+
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~-L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs-~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLS-YNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEECCCCCccccCCHHHhC-CCCCCEEECCCCcccCcCChHHhCCCCCCEEECC-CCCCCCCCchHHhcCCCCCEEEC
Confidence            455566665543222222221 123477999999986 443 57899999999999 77888766678999999999999


Q ss_pred             ccccch
Q 004969          180 CETRVG  185 (721)
Q Consensus       180 ~~~~~~  185 (721)
                      .+|++.
T Consensus       498 s~N~l~  503 (623)
T PLN03150        498 NGNSLS  503 (623)
T ss_pred             cCCccc
Confidence            999875

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=85.95  E-value=0.16  Score=59.94  Aligned_cols=162  Identities=14%  Similarity=0.191  Sum_probs=86.1

Q ss_pred             eEEEEEeCC--CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEe----------eCCCCEEEEEeCCCeE
Q 004969          456 PRQFEYHPS--ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWL----------KKYPSKLIAGSDNGSL  523 (721)
Q Consensus       456 V~~lafsP~--dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fs----------p~d~~~LaSgs~DGtV  523 (721)
                      +.-|.|+|-  +..++..|-.+|+|++.++.+... ..+.  +|...++.++|.          .+||..+++++.||.+
T Consensus       183 ~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~r--sHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v  259 (1283)
T KOG1916|consen  183 PQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFR--SHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSV  259 (1283)
T ss_pred             cceeeecccccccceeeeccCCCceeEeeechHHH-HHHH--hcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcc
Confidence            455666662  457788888899999887764322 2233  566666655542          3688888888888888


Q ss_pred             EEEEcCCCCCc----cc---ccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCcEEEEEccccCCC
Q 004969          524 KLYDIRHMPPS----IR---GMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-SKNIALYDINSGRRLQVFADMHKEH  595 (721)
Q Consensus       524 rIWDi~~~~~~----~~---~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-Dg~IrlWDl~s~~~v~~l~~~h~~~  595 (721)
                      +.|.+.-....    ..   ...++.......|...+..+.. +.-.+++++++ ...+++|.....++...+   -...
T Consensus       260 ~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i-~~w~~~Itttd~nre~k~w~~a~w~Cll~~---~~d~  335 (1283)
T KOG1916|consen  260 GFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSI-GKWVLRITTTDVNREEKFWAEAPWQCLLDK---LIDG  335 (1283)
T ss_pred             ceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCcc-ceeEEEEecccCCcceeEeeccchhhhhhh---cccc
Confidence            88876532211    11   1111111111111111111111 11134555554 456999988777665211   1233


Q ss_pred             eEEEEEcCCCC-----------cEEEEEECCCcEEEEECCC
Q 004969          596 INVVKFSNHSP-----------SIFATSSFDQDVKLWDLRQ  625 (721)
Q Consensus       596 V~sI~fsPdg~-----------~lLaSgs~DgtIrIWDlrs  625 (721)
                      |..|. -++|.           ..+++.+.|++|++|.-+.
T Consensus       336 v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~  375 (1283)
T KOG1916|consen  336 VQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK  375 (1283)
T ss_pred             eEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence            44444 22221           1244567789999997654

>PHA03098 kelch-like protein; Provisional

Probab=85.53  E-value=12  Score=43.38  Aligned_cols=150  Identities=7%  Similarity=0.033  Sum_probs=74.0

Q ss_pred             CCCEEEEEECC-----CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC------CeEEEEEcCCCCC
Q 004969          465 ISCLMVFGTLD-----GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN------GSLKLYDIRHMPP  533 (721)
Q Consensus       465 dg~~LasGs~D-----G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D------GtVrIWDi~~~~~  533 (721)
                      ++.+++.||.+     ..+..||..+++....-+. .+...-.+++.  .++...+.||.+      ..+..||..+...
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l-p~~r~~~~~~~--~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W  418 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPL-IFPRYNPCVVN--VNNLIYVIGGISKNDELLKTVECFSLNTNKW  418 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCc-CcCCccceEEE--ECCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence            56788888865     3577888877654332111 11111112222  355666667632      4578888877543


Q ss_pred             cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC--------CcEEEEECCCCcEEEEEcccc-CCCeEEEEEcCC
Q 004969          534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS--------KNIALYDINSGRRLQVFADMH-KEHINVVKFSNH  604 (721)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D--------g~IrlWDl~s~~~v~~l~~~h-~~~V~sI~fsPd  604 (721)
                      ..  ..... ...    .. .++.. .++..++.||.+        ..+.+||..+++....-.... ......+.+  +
T Consensus       419 ~~--~~~~p-~~r----~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~  487 (534)
T PHA03098        419 SK--GSPLP-ISH----YG-GCAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--N  487 (534)
T ss_pred             ee--cCCCC-ccc----cC-ceEEE-ECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--C
Confidence            11  11000 000    01 11222 245555556532        238899998765433211001 111122223  4


Q ss_pred             CCcEEEEEECC-----CcEEEEECCCCCce
Q 004969          605 SPSIFATSSFD-----QDVKLWDLRQKPIQ  629 (721)
Q Consensus       605 g~~lLaSgs~D-----gtIrIWDlrs~~~~  629 (721)
                      + .+++.|+.+     +.|.+||..+....
T Consensus       488 ~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~  516 (534)
T PHA03098        488 N-KIYVVGGDKYEYYINEIEVYDDKTNTWT  516 (534)
T ss_pred             C-EEEEEcCCcCCcccceeEEEeCCCCEEE
Confidence            4 677777654     46888888876543

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=84.86  E-value=75  Score=35.93  Aligned_cols=192  Identities=14%  Similarity=0.086  Sum_probs=83.4

Q ss_pred             eEEEEEeCCCCCEEEEEE------CCCeEEEEECCCCeEEEEeecCCC-CCCeEEEEEeeCCCCEEEEEeC---------
Q 004969          456 PRQFEYHPSISCLMVFGT------LDGEIVVVNHENENIVSYIPSFGA-MNSVLGLCWLKKYPSKLIAGSD---------  519 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs------~DG~I~IWdl~tg~~i~~l~~~~H-~~~V~sl~fsp~d~~~LaSgs~---------  519 (721)
                      +..+-.-| +|.+++++-      .-|.+.+.|-++............ ..--..+-|. +..+.++|...         
T Consensus       132 PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~q-pr~nvMiSSeWg~P~~~~~G  209 (461)
T PF05694_consen  132 PHTVHCLP-DGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQ-PRHNVMISSEWGAPSMFEKG  209 (461)
T ss_dssp             EEEEEE-S-S--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEE-TTTTEEEE-B---HHHHTT-
T ss_pred             CceeeecC-CccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEc-CCCCEEEEeccCChhhcccC
Confidence            44444456 777777642      236788888888777777654221 2334566676 56677777643         


Q ss_pred             -----------CCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEE--ecCCCEEEEEe-CCCcEEEEEC-CCCc-
Q 004969          520 -----------NGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHV--NSMDELFLASG-YSKNIALYDI-NSGR-  583 (721)
Q Consensus       520 -----------DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~--sp~~~~lls~g-~Dg~IrlWDl-~s~~-  583 (721)
                                 -.++.+||+.+.+.....--+.....       ...+.|  .|...+=++++ -.++|..|-- ..++ 
T Consensus       210 f~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~-------pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W  282 (461)
T PF05694_consen  210 FNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM-------PLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEW  282 (461)
T ss_dssp             --TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE-------EEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEE
T ss_pred             CChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc-------eEEEEecCCCCccceEEEEeccceEEEEEEcCCCCe
Confidence                       35899999998665221111111111       222333  24444444443 3445555443 3333 


Q ss_pred             ---EEEEEccc----------------cCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCC-ceeEEEe--cC-----
Q 004969          584 ---RLQVFADM----------------HKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKP-IQPCYTA--SS-----  636 (721)
Q Consensus       584 ---~v~~l~~~----------------h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~-~~~~~~~--~~-----  636 (721)
                         .+..+...                -..-|+.|.+|.|+..+.+++=.+|.||.||+.... .+.+.+.  .+     
T Consensus       283 ~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~  362 (461)
T PF05694_consen  283 AAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKG  362 (461)
T ss_dssp             EEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B
T ss_pred             eeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccC
Confidence               22222110                024578999999995555666679999999998742 2222211  11     


Q ss_pred             ----------CCCeEEEEEecCCCEEEEEe
Q 004969          637 ----------SKGNVMVCFSPDDHYLLGKG  656 (721)
Q Consensus       637 ----------~~~~vsl~fSpdg~~Lasgs  656 (721)
                                ..++-.+..|-||+.|+..+
T Consensus       363 ~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  363 DHPVVKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             --TTS------S----EEE-TTSSEEEEE-
T ss_pred             CCccccccccCCCCCeEEEccCCeEEEEEe
Confidence                      11234678888998887654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=84.57  E-value=0.4  Score=50.62  Aligned_cols=99  Identities=20%  Similarity=0.318  Sum_probs=72.9

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccc-cccccceeeEEecccccccccccccccccccccchhc
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN-MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLS  178 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (721)
                      -|+|+.+|.-|.  ..-+.+| |.=.+-+-|||+.|-+-++. +--++-+|.||+|. -|-|.++.-  ..-+=.|..|.
T Consensus       307 Pkir~L~lS~N~--i~~v~nL-a~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La-~N~iE~LSG--L~KLYSLvnLD  380 (490)
T KOG1259|consen  307 PKLRRLILSQNR--IRTVQNL-AELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA-QNKIETLSG--LRKLYSLVNLD  380 (490)
T ss_pred             cceeEEeccccc--eeeehhh-hhcccceEeecccchhHhhhhhHhhhcCEeeeehh-hhhHhhhhh--hHhhhhheecc
Confidence            589999998753  3344442 22234578999999988874 33378899999999 898888732  23344577889


Q ss_pred             cccccchhhhHHHHHhhcCCcchhhcc
Q 004969          179 MCETRVGNLWTTIAALSKLPSLAELRF  205 (721)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (721)
                      +.+|+|.|| ..+..+-|||-|.-|++
T Consensus       381 l~~N~Ie~l-deV~~IG~LPCLE~l~L  406 (490)
T KOG1259|consen  381 LSSNQIEEL-DEVNHIGNLPCLETLRL  406 (490)
T ss_pred             ccccchhhH-HHhcccccccHHHHHhh
Confidence            999999998 77777888888877754

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=84.53  E-value=47  Score=35.74  Aligned_cols=110  Identities=13%  Similarity=0.156  Sum_probs=51.5

Q ss_pred             CCCEEEEEECC-----CeEEEEECCCCeEE---EEeecCCCCCCeEEEEEeeCCCCEEEEEeC-----CCeEEEEEcCCC
Q 004969          465 ISCLMVFGTLD-----GEIVVVNHENENIV---SYIPSFGAMNSVLGLCWLKKYPSKLIAGSD-----NGSLKLYDIRHM  531 (721)
Q Consensus       465 dg~~LasGs~D-----G~I~IWdl~tg~~i---~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~-----DGtVrIWDi~~~  531 (721)
                      ++.+++.|+.+     ..+..+|+.+.+..   ..+........-.+++.  .++...+.|+.     ...+..||+.+.
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~--~~~~iYv~GG~~~~~~~~~v~~yd~~~~  149 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY--KDGTLYVGGGNRNGKPSNKSYLFNLETQ  149 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE--ECCEEEEEeCcCCCccCceEEEEcCCCC
Confidence            44677777754     35667777665531   22221111111122232  24566666664     235777888765


Q ss_pred             CCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCC----cEEEEECCCCcE
Q 004969          532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSK----NIALYDINSGRR  584 (721)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg----~IrlWDl~s~~~  584 (721)
                      +-.  .+..      +.........+..-.+..++.||.++    .+..||..+.+-
T Consensus       150 ~W~--~~~~------~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W  198 (323)
T TIGR03548       150 EWF--ELPD------FPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW  198 (323)
T ss_pred             Cee--ECCC------CCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence            432  1110      00000001111123556666676553    356889887654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=84.47  E-value=47  Score=40.25  Aligned_cols=78  Identities=21%  Similarity=0.327  Sum_probs=54.2

Q ss_pred             cCeEEEEEeCCCCCEEEEEECCCeEEEEECCC----------CeE--E-EEeec------CCCCCCeEEEEEeeCC--CC
Q 004969          454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHEN----------ENI--V-SYIPS------FGAMNSVLGLCWLKKY--PS  512 (721)
Q Consensus       454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~t----------g~~--i-~~l~~------~~H~~~V~sl~fsp~d--~~  512 (721)
                      +.|..|..+| +|.+++..|..| |.|..+..          |+.  . +++..      ..+...|..+.|+|..  +.
T Consensus        85 f~v~~i~~n~-~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   85 FEVHQISLNP-TGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             eeEEEEEECC-CCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            5689999999 999999988877 44444321          111  1 11111      1345679999999753  57


Q ss_pred             EEEEEeCCCeEEEEEcCCCCC
Q 004969          513 KLIAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       513 ~LaSgs~DGtVrIWDi~~~~~  533 (721)
                      .|+.=..|+++|+||+.....
T Consensus       163 ~l~vLtsdn~lR~y~~~~~~~  183 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDISDPQH  183 (717)
T ss_pred             eEEEEecCCEEEEEecCCCCC
Confidence            888888999999999986443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=84.45  E-value=2.8  Score=31.42  Aligned_cols=33  Identities=21%  Similarity=0.313  Sum_probs=27.8

Q ss_pred             CCeEEEEEcCCCC--cEEEEEECCCcEEEEECCCC
Q 004969          594 EHINVVKFSNHSP--SIFATSSFDQDVKLWDLRQK  626 (721)
Q Consensus       594 ~~V~sI~fsPdg~--~lLaSgs~DgtIrIWDlrs~  626 (721)
                      +.|.++.|+|...  .+|+.+-.-|.|.|+|+|+.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            4688999998764  58888888999999999963

It contains a characteristic DLL sequence motif.

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=84.12  E-value=0.44  Score=57.53  Aligned_cols=33  Identities=18%  Similarity=0.190  Sum_probs=13.7

Q ss_pred             eEeecccccccccccccccceeeEEecccccccccc
Q 004969          128 EVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSF  163 (721)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  163 (721)
                      +.|+|++|+|.+|-  +.+.+|.+|+|. .|.|++|
T Consensus       245 k~LdLs~N~LtsLP--~lp~sL~~L~Ls-~N~L~~L  277 (788)
T PRK15387        245 RTLEVSGNQLTSLP--VLPPGLLELSIF-SNPLTHL  277 (788)
T ss_pred             cEEEecCCccCccc--Ccccccceeecc-CCchhhh
Confidence            34455444444432  123344444444 3334433

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.03  E-value=27  Score=41.46  Aligned_cols=177  Identities=14%  Similarity=0.179  Sum_probs=86.3

Q ss_pred             CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEec--cCCC
Q 004969          475 DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFD--EFDQ  552 (721)
Q Consensus       475 DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~--~~~~  552 (721)
                      --.|+|++.. |+.+..+.. .| +.+-++.|+  +...|+....||++++|++-.......       .+.+.  ...-
T Consensus        63 ~~~I~If~~s-G~lL~~~~w-~~-~~lI~mgWs--~~eeLI~v~k~g~v~Vy~~~ge~ie~~-------svg~e~~~~~I  130 (829)
T KOG2280|consen   63 RPYIRIFNIS-GQLLGRILW-KH-GELIGMGWS--DDEELICVQKDGTVHVYGLLGEFIESN-------SVGFESQMSDI  130 (829)
T ss_pred             ceeEEEEecc-ccchHHHHh-cC-CCeeeeccc--CCceEEEEeccceEEEeecchhhhccc-------ccccccccCce
Confidence            3458888875 777665553 23 478899997  567788889999999999976433110       01011  1111


Q ss_pred             eEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCC--CeEEEEEcCCC--CcEEE-EEECCCcEEEEECCCCC
Q 004969          553 LTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKE--HINVVKFSNHS--PSIFA-TSSFDQDVKLWDLRQKP  627 (721)
Q Consensus       553 V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~--~V~sI~fsPdg--~~lLa-Sgs~DgtIrIWDlrs~~  627 (721)
                      +.+-.|+  ++..+- ..+|.+.+-.-......+++......  .-+|-...+++  ...++ ..-..+ ..++-.....
T Consensus       131 ~ec~~f~--~GVavl-t~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~  206 (829)
T KOG2280|consen  131 VECRFFH--NGVAVL-TVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESR  206 (829)
T ss_pred             eEEEEec--CceEEE-ecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceeccc
Confidence            2333442  233322 22344333322212122232210111  11222222221  01111 110111 1222222222


Q ss_pred             ceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          628 IQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       628 ~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                      .+...-...+..++.++.||++++|+-=...|.|.+-+..
T Consensus       207 ~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D  246 (829)
T KOG2280|consen  207 VQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSID  246 (829)
T ss_pred             ccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecc
Confidence            1211111234556689999999999988889998887765

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=83.60  E-value=0.44  Score=52.14  Aligned_cols=75  Identities=19%  Similarity=0.377  Sum_probs=60.2

Q ss_pred             Eeeccccccccc--ccccccceeeEEecccccccccccccccccccccchhcccc-ccchhhhHHHHHhhcCCcchhhcc
Q 004969          129 VLNLRSSRFRKL--NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCE-TRVGNLWTTIAALSKLPSLAELRF  205 (721)
Q Consensus       129 ~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  205 (721)
                      .|+|-.|.|+-+  +-++.++||..|+|. .|.|+-|.++-|..++.|..|.+-+ |+|..|=  -.|+-+|.+|+.|-.
T Consensus        71 eirLdqN~I~~iP~~aF~~l~~LRrLdLS-~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~--k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   71 EIRLDQNQISSIPPGAFKTLHRLRRLDLS-KNNISFIAPDAFKGLASLLSLVLYGNNKITDLP--KGAFGGLSSLQRLLL  147 (498)
T ss_pred             EEEeccCCcccCChhhccchhhhceeccc-ccchhhcChHhhhhhHhhhHHHhhcCCchhhhh--hhHhhhHHHHHHHhc
Confidence            366778888887  457788899999999 8999999999999999999999988 8898773  356667777777744


Q ss_pred             c
Q 004969          206 Q  206 (721)
Q Consensus       206 ~  206 (721)
                      -
T Consensus       148 N  148 (498)
T KOG4237|consen  148 N  148 (498)
T ss_pred             C
Confidence            3

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=83.55  E-value=30  Score=41.50  Aligned_cols=110  Identities=15%  Similarity=0.187  Sum_probs=68.4

Q ss_pred             eEEEEEec--CCCEEEEEeCCCcEEEEECCC-------C-------------cEEEEEccccCCCeEEEEEc--CCCCcE
Q 004969          553 LTSVHVNS--MDELFLASGYSKNIALYDINS-------G-------------RRLQVFADMHKEHINVVKFS--NHSPSI  608 (721)
Q Consensus       553 V~sv~~sp--~~~~lls~g~Dg~IrlWDl~s-------~-------------~~v~~l~~~h~~~V~sI~fs--Pdg~~l  608 (721)
                      |+.+.+..  ....++++.+||.|.+|...+       .             ++-..+.  ....+++++++  ... ++
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~--v~~SaWGLdIh~~~~~-rl  179 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR--VGASAWGLDIHDYKKS-RL  179 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee--cCCceeEEEEEecCcc-eE
Confidence            45444422  345677788999999997631       0             0112222  35578899998  655 78


Q ss_pred             EEEEECCCcEEEEECCCC--CceeEEEecCCCCeE-EEEEecCC-----C-EEEEEeCCCcEEEEEc
Q 004969          609 FATSSFDQDVKLWDLRQK--PIQPCYTASSSKGNV-MVCFSPDD-----H-YLLGKGSGTSMFVQSL  666 (721)
Q Consensus       609 LaSgs~DgtIrIWDlrs~--~~~~~~~~~~~~~~v-sl~fSpdg-----~-~Lasgs~Dg~I~VWDl  666 (721)
                      +|+++....|.||-....  +....... .+...+ +++|-++.     . ++++++-.|.+.+|++
T Consensus       180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~-~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  180 IAVSSNSQEVTVFAFALVDERFYHVPSH-QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEecCCceEEEEEEecccccccccccc-ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            888888888888765542  11111111 122333 77776633     2 7888999999998887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=83.49  E-value=3.8  Score=30.69  Aligned_cols=31  Identities=16%  Similarity=0.381  Sum_probs=27.2

Q ss_pred             CeEEEEEeCCCC--CEEEEEECCCeEEEEECCC
Q 004969          455 RPRQFEYHPSIS--CLMVFGTLDGEIVVVNHEN  485 (721)
Q Consensus       455 ~V~~lafsP~dg--~~LasGs~DG~I~IWdl~t  485 (721)
                      +|+++.|+|..+  ++|+.+-.-|.|.|+|+.+
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            489999998666  7999999999999999985

It contains a characteristic DLL sequence motif.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=83.33  E-value=71  Score=39.01  Aligned_cols=160  Identities=11%  Similarity=0.167  Sum_probs=92.1

Q ss_pred             CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeE-------------EEEEeeC--CCCEEEEEeC----------
Q 004969          465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVL-------------GLCWLKK--YPSKLIAGSD----------  519 (721)
Q Consensus       465 dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~-------------sl~fsp~--d~~~LaSgs~----------  519 (721)
                      .+.+++.++.||.+.-.|.++|+....+...   +.|.             .+. +++  .++.++.|+.          
T Consensus       259 ~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~---G~vdl~~~~g~~~~g~~~~t-s~P~V~~g~VIvG~~v~d~~~~~~~  334 (764)
T TIGR03074       259 CARRIILPTSDARLIALDADTGKLCEDFGNN---GTVDLTAGMGTTPPGYYYPT-SPPLVAGTTVVIGGRVADNYSTDEP  334 (764)
T ss_pred             cCCEEEEecCCCeEEEEECCCCCEEEEecCC---CceeeecccCcCCCcccccc-cCCEEECCEEEEEecccccccccCC
Confidence            4468889999999999999999988765321   1110             000 011  1346666643          


Q ss_pred             CCeEEEEEcCCCCCcccccccCcce-------eEeccC-CCe-EEEEEecCCCEEEEEe------------------CCC
Q 004969          520 NGSLKLYDIRHMPPSIRGMHYGAGT-------VTFDEF-DQL-TSVHVNSMDELFLASG------------------YSK  572 (721)
Q Consensus       520 DGtVrIWDi~~~~~~~~~~~~~~~~-------~~~~~~-~~V-~sv~~sp~~~~lls~g------------------~Dg  572 (721)
                      +|.|+-+|.++++.......+....       ..+... ..+ ...++.+..+.++.+.                  ..+
T Consensus       335 ~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~  414 (764)
T TIGR03074       335 SGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSS  414 (764)
T ss_pred             CcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccc
Confidence            6899999999988754332211000       011100 111 1223333333333311                  246


Q ss_pred             cEEEEECCCCcEEEEEccccCC--------CeEEEEEcC-CCC--cEEEEEECCCcEEEEECCCCCc
Q 004969          573 NIALYDINSGRRLQVFADMHKE--------HINVVKFSN-HSP--SIFATSSFDQDVKLWDLRQKPI  628 (721)
Q Consensus       573 ~IrlWDl~s~~~v~~l~~~h~~--------~V~sI~fsP-dg~--~lLaSgs~DgtIrIWDlrs~~~  628 (721)
                      .|.-.|+++|+....++..|.+        ...-+.+.. +|.  ..++.+..+|.+.+.|.++++.
T Consensus       415 slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~  481 (764)
T TIGR03074       415 SLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEP  481 (764)
T ss_pred             eEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence            6888899999999888742211        111122322 341  2788899999999999999854

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=83.16  E-value=13  Score=44.03  Aligned_cols=101  Identities=14%  Similarity=0.170  Sum_probs=63.3

Q ss_pred             CeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEe--cCCCEEEEEeCCCcEEEEEcC-----
Q 004969          595 HINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFS--PDDHYLLGKGSGTSMFVQSLR-----  667 (721)
Q Consensus       595 ~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fS--pdg~~Lasgs~Dg~I~VWDl~-----  667 (721)
                      .+.-+.-+..+ ...++.+....+.|||.+.+.......+..+..+..+.|.  |+|+.+++.|-.+.|.+|.-.     
T Consensus        31 ~~~li~gss~~-k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~  109 (631)
T PF12234_consen   31 NPSLISGSSIK-KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT  109 (631)
T ss_pred             CcceEeecccC-cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence            34445555544 3444444456799999999865544455444555577764  699999999999999988642     


Q ss_pred             -CCc----c-----cccc-cCeEEEEECCCCCcccccccEEEEecCC
Q 004969          668 -GDP----F-----RDFN-MSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       668 -g~~----l-----~~~~-~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                       ..|    +     ..+. .+|....|.++|       .+++.+|++
T Consensus       110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G-------~LvV~sGNq  149 (631)
T PF12234_consen  110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDG-------TLVVGSGNQ  149 (631)
T ss_pred             cCCcccceeEEEEeecCCCCCccceeEecCC-------eEEEEeCCE
Confidence             111    2     2222 366777888888       555555544

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=83.10  E-value=0.38  Score=55.33  Aligned_cols=98  Identities=22%  Similarity=0.317  Sum_probs=69.4

Q ss_pred             cceEeeccCCchhhHHHH-HhhcCCccceEeeccccccccc-ccccccceeeEEecccccccccccccccccccccchhc
Q 004969          101 KLRVVDLHDSSFGKDFIR-NLSQRGLMCEVLNLRSSRFRKL-NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLS  178 (721)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (721)
                      .||.|++||+.+----+- |+++- -.--+|||+.|.++.- ....+-+++-+|||+ .|+|.+|+---|-.+--|-.|.
T Consensus        79 ~LRsv~~R~N~LKnsGiP~diF~l-~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS-~N~IetIPn~lfinLtDLLfLD  156 (1255)
T KOG0444|consen   79 RLRSVIVRDNNLKNSGIPTDIFRL-KDLTILDLSHNQLREVPTNLEYAKNSIVLNLS-YNNIETIPNSLFINLTDLLFLD  156 (1255)
T ss_pred             hhHHHhhhccccccCCCCchhccc-ccceeeecchhhhhhcchhhhhhcCcEEEEcc-cCccccCCchHHHhhHhHhhhc
Confidence            466678888765322111 22221 1234799999998753 122344788899999 7899999999999999999999


Q ss_pred             cccccchhhhHHHHHhhcCCcc
Q 004969          179 MCETRVGNLWTTIAALSKLPSL  200 (721)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~  200 (721)
                      +.+||..-|=-.+.-|+.|.+|
T Consensus       157 LS~NrLe~LPPQ~RRL~~LqtL  178 (1255)
T KOG0444|consen  157 LSNNRLEMLPPQIRRLSMLQTL  178 (1255)
T ss_pred             cccchhhhcCHHHHHHhhhhhh
Confidence            9999988776666666665554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=82.76  E-value=0.99  Score=54.08  Aligned_cols=105  Identities=19%  Similarity=0.309  Sum_probs=81.9

Q ss_pred             hcccceEeeccCC-chhhHHHHHhhcCCccceEeeccccccccc---ccccccceeeEEecccccccccccccccccccc
Q 004969           98 IDQKLRVVDLHDS-SFGKDFIRNLSQRGLMCEVLNLRSSRFRKL---NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPN  173 (721)
Q Consensus        98 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  173 (721)
                      -.|+||-.|++.. .|..+..+.+++.=.+=+.|.+++-.|-+-   .+...|++|..|++. +|.|+.+  .|=+..+|
T Consensus       120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS-~TnI~nl--~GIS~Lkn  196 (699)
T KOG3665|consen  120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDIS-GTNISNL--SGISRLKN  196 (699)
T ss_pred             HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecC-CCCccCc--HHHhcccc
Confidence            4567777777653 466777777777666666677776665443   566789999999999 9999999  88899999


Q ss_pred             cchhccccccchhhhHHHHHhhcCCcchhhccc
Q 004969          174 LICLSMCETRVGNLWTTIAALSKLPSLAELRFQ  206 (721)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (721)
                      |..|+|++=.+.+ |..+-.|+.|..|+-|...
T Consensus       197 Lq~L~mrnLe~e~-~~~l~~LF~L~~L~vLDIS  228 (699)
T KOG3665|consen  197 LQVLSMRNLEFES-YQDLIDLFNLKKLRVLDIS  228 (699)
T ss_pred             HHHHhccCCCCCc-hhhHHHHhcccCCCeeecc
Confidence            9999999988885 6778888888888888543

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=82.52  E-value=27  Score=43.90  Aligned_cols=147  Identities=15%  Similarity=0.181  Sum_probs=84.5

Q ss_pred             EECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCC-------EEEEEeCCCeEEEEEcCCCCCcccccccCcce
Q 004969          472 GTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPS-------KLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGT  544 (721)
Q Consensus       472 Gs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~-------~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~  544 (721)
                      -+.|..+.+|+.+++.....+..  -...|..|....+.++       +++.-+.--.|.++-+.-.......-. ....
T Consensus        95 iTiDn~L~lWny~~~~e~~~~d~--~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~-f~~~  171 (1311)
T KOG1900|consen   95 ITIDNNLFLWNYESDNELAEYDG--LSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSI-FNTS  171 (1311)
T ss_pred             EEeCCeEEEEEcCCCCccccccc--hhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccc-cccc
Confidence            35688999999999877777763  3445666665444432       233333334566666544322110000 0001


Q ss_pred             eEec-cCCCeEEEEEecCCCEEEEEeCCCcEEEEEC----CCC---c-E----------------EEEEccccCCCeEEE
Q 004969          545 VTFD-EFDQLTSVHVNSMDELFLASGYSKNIALYDI----NSG---R-R----------------LQVFADMHKEHINVV  599 (721)
Q Consensus       545 ~~~~-~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl----~s~---~-~----------------v~~l~~~h~~~V~sI  599 (721)
                      .... ....|.++.. .+++.++-+|.||.  +|.+    ..|   + +                +..+.+.+..+|..+
T Consensus       172 ~~i~~dg~~V~~I~~-t~nGRIF~~G~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi  248 (1311)
T KOG1900|consen  172 FKISVDGVSVNCITY-TENGRIFFAGRDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQI  248 (1311)
T ss_pred             eeeecCCceEEEEEe-ccCCcEEEeecCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceee
Confidence            1111 2235788885 44455555666664  4433    111   1 0                112233467899999


Q ss_pred             EEcCCCCcEEEEEECCCcEEEEECCC
Q 004969          600 KFSNHSPSIFATSSFDQDVKLWDLRQ  625 (721)
Q Consensus       600 ~fsPdg~~lLaSgs~DgtIrIWDlrs  625 (721)
                      ...... .++.+-+..|+|++||+..
T Consensus       249 ~ID~SR-~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  249 TIDNSR-NILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             Eecccc-ceeeeeccCceEEEEEccC
Confidence            998766 7999999999999999986

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=82.18  E-value=0.79  Score=50.85  Aligned_cols=72  Identities=19%  Similarity=0.322  Sum_probs=52.6

Q ss_pred             ceEeecccccccccccccccc--eeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhh-cCCcchhh
Q 004969          127 CEVLNLRSSRFRKLNMIGEFK--RIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALS-KLPSLAEL  203 (721)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  203 (721)
                      =..|++.+|++-++.-...+.  +|..|.+. .+.|..++ ..-..+|+|+.|.|.+|+|..+    .++. ++++|.+|
T Consensus       118 l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~-~N~i~~l~-~~~~~l~~L~~L~l~~N~l~~l----~~~~~~~~~L~~L  191 (394)
T COG4886         118 LTSLDLDNNNITDIPPLIGLLKSNLKELDLS-DNKIESLP-SPLRNLPNLKNLDLSFNDLSDL----PKLLSNLSNLNNL  191 (394)
T ss_pred             eeEEecCCcccccCccccccchhhccccccc-ccchhhhh-hhhhccccccccccCCchhhhh----hhhhhhhhhhhhe
Confidence            355778888888887766554  78888888 77777775 4556778888888888888766    6655 77777777


Q ss_pred             c
Q 004969          204 R  204 (721)
Q Consensus       204 ~  204 (721)
                      .
T Consensus       192 ~  192 (394)
T COG4886         192 D  192 (394)
T ss_pred             e
Confidence            3

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=81.71  E-value=24  Score=40.18  Aligned_cols=159  Identities=18%  Similarity=0.201  Sum_probs=91.9

Q ss_pred             ccCeEEEEEeCCCCCEEEE-EECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeC-------CCCEEEEEeCCCeEE
Q 004969          453 SFRPRQFEYHPSISCLMVF-GTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKK-------YPSKLIAGSDNGSLK  524 (721)
Q Consensus       453 ~~~V~~lafsP~dg~~Las-Gs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~-------d~~~LaSgs~DGtVr  524 (721)
                      ++.|..+-.+.++.++|.. |+.-..++-.|++.|+.+..+..  |.. | -|.|.|.       ....|+.-|..+..+
T Consensus       466 Sidp~K~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~--~dd-v-vVqy~p~~kf~qmt~eqtlvGlS~~svFr  541 (776)
T COG5167         466 SIDPEKIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDL--KDD-V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFR  541 (776)
T ss_pred             cCChhhceeecCCcceEEecCCCcccceeeecccceeeeEeec--CCc-c-eeecCCchhHHhcCccceEEeecccceEE
Confidence            3455566566656666554 55566788889999999988873  333 3 4666642       123455444444333


Q ss_pred             EEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCC
Q 004969          525 LYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNH  604 (721)
Q Consensus       525 IWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPd  604 (721)
                       -|.+.....+....    .-.+.......+..- ...++++++|..|.|++||.-.-.....+.+ .+..|-.|..+.+
T Consensus       542 -IDPR~~gNKi~v~e----sKdY~tKn~Fss~~t-TesGyIa~as~kGDirLyDRig~rAKtalP~-lG~aIk~idvta~  614 (776)
T COG5167         542 -IDPRARGNKIKVVE----SKDYKTKNKFSSGMT-TESGYIAAASRKGDIRLYDRIGKRAKTALPG-LGDAIKHIDVTAN  614 (776)
T ss_pred             -ecccccCCceeeee----ehhcccccccccccc-ccCceEEEecCCCceeeehhhcchhhhcCcc-cccceeeeEeecC
Confidence             35443222111000    001111122233322 3568999999999999999653333333443 7788999999999


Q ss_pred             CCcEEEEEECCCcEEEEECC
Q 004969          605 SPSIFATSSFDQDVKLWDLR  624 (721)
Q Consensus       605 g~~lLaSgs~DgtIrIWDlr  624 (721)
                      |..+++||-  .++-+-|++
T Consensus       615 Gk~ilaTCk--~yllL~d~~  632 (776)
T COG5167         615 GKHILATCK--NYLLLTDVP  632 (776)
T ss_pred             CcEEEEeec--ceEEEEecc
Confidence            965555553  567777765

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.63  E-value=17  Score=45.63  Aligned_cols=29  Identities=24%  Similarity=0.535  Sum_probs=25.6

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHE  484 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~  484 (721)
                      .+..++|+| ...++|.|+..|.|+++-..
T Consensus        37 ~~~~~afD~-~q~llai~t~tg~i~~yg~~   65 (993)
T KOG1983|consen   37 TPSALAFDP-TQGLLAIGTRTGAIKIYGQP   65 (993)
T ss_pred             CCcceeecc-ccceEEEEEecccEEEeccc
Confidence            466789999 88999999999999999865

>PRK10115 protease 2; Provisional

Probab=81.12  E-value=1.4e+02  Score=36.19  Aligned_cols=113  Identities=12%  Similarity=0.109  Sum_probs=63.1

Q ss_pred             cCeEEEEEeCCCCCEEEEEEC-----CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEE-EEEeCC-----Ce
Q 004969          454 FRPRQFEYHPSISCLMVFGTL-----DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKL-IAGSDN-----GS  522 (721)
Q Consensus       454 ~~V~~lafsP~dg~~LasGs~-----DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~L-aSgs~D-----Gt  522 (721)
                      ..+..+.|+| ++++|+.+.+     ..+|++.|+.+|..+...-  ..  .-..++|. ++++.| ++...+     ..
T Consensus       127 ~~l~~~~~Sp-dg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i--~~--~~~~~~w~-~D~~~~~y~~~~~~~~~~~~  200 (686)
T PRK10115        127 YTLGGMAITP-DNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL--DN--VEPSFVWA-NDSWTFYYVRKHPVTLLPYQ  200 (686)
T ss_pred             EEEeEEEECC-CCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc--cC--cceEEEEe-eCCCEEEEEEecCCCCCCCE
Confidence            3577899999 8888887643     2468889998886432211  11  11468998 455544 443322     36


Q ss_pred             EEEEEcCCCCCcccccccCcceeEeccC-CCeE-EEEEecCCCEEEEEeC---CCcEEEEECC
Q 004969          523 LKLYDIRHMPPSIRGMHYGAGTVTFDEF-DQLT-SVHVNSMDELFLASGY---SKNIALYDIN  580 (721)
Q Consensus       523 VrIWDi~~~~~~~~~~~~~~~~~~~~~~-~~V~-sv~~sp~~~~lls~g~---Dg~IrlWDl~  580 (721)
                      |..+++.++...-        ...+... .... .+..+.++..++..+.   ++.+.+|+..
T Consensus       201 v~~h~lgt~~~~d--------~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~  255 (686)
T PRK10115        201 VWRHTIGTPASQD--------ELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE  255 (686)
T ss_pred             EEEEECCCChhHC--------eEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence            7777887763211        1112111 1112 2233336666555443   5679999953

>PHA02790 Kelch-like protein; Provisional

Probab=81.03  E-value=34  Score=39.36  Aligned_cols=145  Identities=10%  Similarity=0.055  Sum_probs=71.5

Q ss_pred             CCCEEEEEECC--CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCC---eEEEEEcCCCCCcccccc
Q 004969          465 ISCLMVFGTLD--GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG---SLKLYDIRHMPPSIRGMH  539 (721)
Q Consensus       465 dg~~LasGs~D--G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DG---tVrIWDi~~~~~~~~~~~  539 (721)
                      ++.+.+.|+.+  ..+..||..+++....-+. .....-.+++.  .++...+.||.++   ++..||.++..-...  .
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l-~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~--~  392 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL-LKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFG--P  392 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCC-CCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeC--C
Confidence            56777888764  3578888776654332211 11111122222  3566777777653   466788776433111  0


Q ss_pred             cCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcccc-CCCeEEEEEcCCCCcEEEEEECC---
Q 004969          540 YGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMH-KEHINVVKFSNHSPSIFATSSFD---  615 (721)
Q Consensus       540 ~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h-~~~V~sI~fsPdg~~lLaSgs~D---  615 (721)
                      ... ...    .....+.+   ++.+++.|  |.+.+||..+++-...-.-.+ ......+.+  +| .+.+.||.+   
T Consensus       393 ~m~-~~r----~~~~~~~~---~~~IYv~G--G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~--~~-~IYviGG~~~~~  459 (480)
T PHA02790        393 STY-YPH----YKSCALVF---GRRLFLVG--RNAEFYCESSNTWTLIDDPIYPRDNPELIIV--DN-KLLLIGGFYRGS  459 (480)
T ss_pred             CCC-Ccc----ccceEEEE---CCEEEEEC--CceEEecCCCCcEeEcCCCCCCccccEEEEE--CC-EEEEECCcCCCc
Confidence            000 000    01112222   44555554  457789998765442211001 122222222  44 688888764   


Q ss_pred             --CcEEEEECCCCC
Q 004969          616 --QDVKLWDLRQKP  627 (721)
Q Consensus       616 --gtIrIWDlrs~~  627 (721)
                        .+|..||..+++
T Consensus       460 ~~~~ve~Yd~~~~~  473 (480)
T PHA02790        460 YIDTIEVYNNRTYS  473 (480)
T ss_pred             ccceEEEEECCCCe
Confidence              356777777654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=80.54  E-value=1.1  Score=54.17  Aligned_cols=57  Identities=19%  Similarity=0.215  Sum_probs=30.1

Q ss_pred             cceEeecccccccccccccccceeeEEecccccccccccccccccccccchhccccccchhh
Q 004969          126 MCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNL  187 (721)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (721)
                      +-+.|+|++|+|..+-- .-.++|.+|+|+ +|.|+.+++.-.   ++|+.|.+.+|++..|
T Consensus       347 sL~~L~Ls~N~L~~LP~-~lp~~L~~LdLs-~N~Lt~LP~~l~---~sL~~LdLs~N~L~~L  403 (754)
T PRK15370        347 ELQVLDVSKNQITVLPE-TLPPTITTLDVS-RNALTNLPENLP---AALQIMQASRNNLVRL  403 (754)
T ss_pred             cccEEECCCCCCCcCCh-hhcCCcCEEECC-CCcCCCCCHhHH---HHHHHHhhccCCcccC
Confidence            34556666666654421 112466666666 556666655422   2455566666555543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.54  E-value=0.88  Score=48.20  Aligned_cols=208  Identities=22%  Similarity=0.222  Sum_probs=104.0

Q ss_pred             eeccccccccccccc----ccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHH-hhcCCcchhhc
Q 004969          130 LNLRSSRFRKLNMIG----EFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAA-LSKLPSLAELR  204 (721)
Q Consensus       130 ~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  204 (721)
                      |||.-|.|.+-+-+|    .+++|+||||. +|++.+--..--.-.-||+.|.+.||...  ||++.. |+.||.+.||.
T Consensus        76 lDL~~N~iSdWseI~~ile~lP~l~~LNls-~N~L~s~I~~lp~p~~nl~~lVLNgT~L~--w~~~~s~l~~lP~vtelH  152 (418)
T KOG2982|consen   76 LDLTGNLISDWSEIGAILEQLPALTTLNLS-CNSLSSDIKSLPLPLKNLRVLVLNGTGLS--WTQSTSSLDDLPKVTELH  152 (418)
T ss_pred             hhcccchhccHHHHHHHHhcCccceEeecc-CCcCCCccccCcccccceEEEEEcCCCCC--hhhhhhhhhcchhhhhhh
Confidence            455555555544333    56788888888 77776643322233447888888888876  776654 45677777773


Q ss_pred             cceeeecCCCCCCCCCCCCCCcccccccc------cCCCCCCC--cceeec--CCCccc----ccCCCCCc-cchhcccc
Q 004969          205 FQNWLCCDDTGNSSGSSDQDDKTDFSQLN------ICSSFGAY--GNVVIN--PDSQIL----VEDSSDDS-EVDFSIQH  269 (721)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~--~~~~~~--~~~~~~----~~~~~~~~-~~~~~~~~  269 (721)
                      ..        -..--+-+.||.|+-.- .      .....++.  .++-+.  -.||..    ++-|+.+. .++-++-+
T Consensus       153 mS--------~N~~rq~n~Dd~c~e~~-s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~  223 (418)
T KOG2982|consen  153 MS--------DNSLRQLNLDDNCIEDW-STEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPF  223 (418)
T ss_pred             hc--------cchhhhhcccccccccc-chhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCC
Confidence            21        00011123455554320 0      00000000  000000  111211    22333332 12222333


Q ss_pred             cchhhhhhhccCCcCCCcccccccccccccccCcccCCchHHHHhhhcccccccccccCC----CCccchHHHHHHHHHh
Q 004969          270 REYDYLELLSNLVPQLDGEIDLWNEVSFDAFSNQNEEESSAGVLARCTADVSLKYISCHA----SPICFEKHYRDYMIAS  345 (721)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~Pi~~~~~yRe~~I~~  345 (721)
                      .-...+++.+       .+..+|..++..+               +.-+   |.-++-..    .|+.. ..-|..+|+.
T Consensus       224 p~~~~LnL~~-------~~idswasvD~Ln---------------~f~~---l~dlRv~~~Pl~d~l~~-~err~llIaR  277 (418)
T KOG2982|consen  224 PSLSCLNLGA-------NNIDSWASVDALN---------------GFPQ---LVDLRVSENPLSDPLRG-GERRFLLIAR  277 (418)
T ss_pred             Ccchhhhhcc-------cccccHHHHHHHc---------------CCch---hheeeccCCcccccccC-CcceEEEEee
Confidence            4444444333       2334454443333               2211   12222222    23322 2235567899


Q ss_pred             CccccccCCCCcChHHHHhhhccccccccC
Q 004969          346 LPKLKFLDNLPIRKVDRERATITYSQYFEH  375 (721)
Q Consensus       346 Lp~Lk~Ldn~~I~k~ere~a~~~~~~~lE~  375 (721)
                      |+++++|.+..|...+|+...+.|-.|+-.
T Consensus       278 L~~v~vLNGskIss~er~dSEr~fVRyym~  307 (418)
T KOG2982|consen  278 LTKVQVLNGSKISSRERKDSERRFVRYYMS  307 (418)
T ss_pred             ccceEEecCcccchhhhhhhHHHHHHHHhh
Confidence            999999999999999999888888777654

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=80.37  E-value=87  Score=33.51  Aligned_cols=164  Identities=10%  Similarity=0.178  Sum_probs=89.1

Q ss_pred             CCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-CCCcE
Q 004969          496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNI  574 (721)
Q Consensus       496 ~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~I  574 (721)
                      |-...|.++.|+| +.+.|++......-.||=...|+.. .       .+..........+.+.. ++.++.+. .++.+
T Consensus        83 g~~~nvS~LTynp-~~rtLFav~n~p~~iVElt~~Gdli-r-------tiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l  152 (316)
T COG3204          83 GETANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLI-R-------TIPLTGFSDPETIEYIG-GNQFVIVDERDRAL  152 (316)
T ss_pred             cccccccceeeCC-CcceEEEecCCCceEEEEecCCceE-E-------EecccccCChhHeEEec-CCEEEEEehhcceE
Confidence            4455699999995 5555655555555555544444431 1       11122222334455533 44455554 57888


Q ss_pred             EEEECCCCcEEEE-----E--cc-cc-CCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCC-ceeEEEecCCCC-----
Q 004969          575 ALYDINSGRRLQV-----F--AD-MH-KEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKP-IQPCYTASSSKG-----  639 (721)
Q Consensus       575 rlWDl~s~~~v~~-----l--~~-~h-~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~-~~~~~~~~~~~~-----  639 (721)
                      .++.+..+..+..     +  .. .+ ....-.++|.|.+ ..|..+-.-.-++||.+.... .........+..     
T Consensus       153 ~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f  231 (316)
T COG3204         153 YLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLF  231 (316)
T ss_pred             EEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCCcccccccccCcccccceE
Confidence            8887765432211     1  11 12 5567889999998 556666666667777665432 111111111111     


Q ss_pred             --eE-EEEEec-CCCEEEEEeCCCcEEEEEcCCCc
Q 004969          640 --NV-MVCFSP-DDHYLLGKGSGTSMFVQSLRGDP  670 (721)
Q Consensus       640 --~v-sl~fSp-dg~~Lasgs~Dg~I~VWDl~g~~  670 (721)
                        .+ ++.|++ .+..++-+..++.+--.|..|.+
T Consensus       232 ~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~  266 (316)
T COG3204         232 VLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEV  266 (316)
T ss_pred             eeccccceecCCCCcEEEEecCCceEEEEecCCCe
Confidence              12 577876 45555656666777777777664

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=80.20  E-value=1.2  Score=53.93  Aligned_cols=78  Identities=13%  Similarity=0.183  Sum_probs=48.6

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhcc
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM  179 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (721)
                      .+|+.++|.++.|-. +=..+.   -..+.|+|++|++..+-. .-+..|.+|+|+ +|+|+.|+...+   ++|+.|.+
T Consensus       220 ~nL~~L~Ls~N~Lts-LP~~l~---~~L~~L~Ls~N~L~~LP~-~l~s~L~~L~Ls-~N~L~~LP~~l~---~sL~~L~L  290 (754)
T PRK15370        220 GNIKTLYANSNQLTS-IPATLP---DTIQEMELSINRITELPE-RLPSALQSLDLF-HNKISCLPENLP---EELRYLSV  290 (754)
T ss_pred             cCCCEEECCCCcccc-CChhhh---ccccEEECcCCccCcCCh-hHhCCCCEEECc-CCccCccccccC---CCCcEEEC
Confidence            478888888876542 111111   245778888887776531 123467778887 777777766443   47777777


Q ss_pred             ccccchh
Q 004969          180 CETRVGN  186 (721)
Q Consensus       180 ~~~~~~~  186 (721)
                      .+|++..
T Consensus       291 s~N~Lt~  297 (754)
T PRK15370        291 YDNSIRT  297 (754)
T ss_pred             CCCcccc
Confidence            7776654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=80.12  E-value=0.83  Score=54.97  Aligned_cols=67  Identities=24%  Similarity=0.382  Sum_probs=54.0

Q ss_pred             eecccccccc--cccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcC
Q 004969          130 LNLRSSRFRK--LNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKL  197 (721)
Q Consensus       130 ~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (721)
                      |.|-+|++-.  .-.+-.|++|..|+|. .|.|++|+.-|+...+-|+-|.+.||+.++|=+|+|++..|
T Consensus       364 LylanN~Ltd~c~p~l~~~~hLKVLhLs-yNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L  432 (1081)
T KOG0618|consen  364 LYLANNHLTDSCFPVLVNFKHLKVLHLS-YNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRL  432 (1081)
T ss_pred             HHHhcCcccccchhhhccccceeeeeec-ccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhh
Confidence            4444555432  1223368999999999 68899999999999999999999999999999999976543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	721
4e5z_B	436	Damaged Dna Induced Uv-Damaged Dna-Binding Protein		2e-07
4e54_B	435	Damaged Dna Induced Uv-Damaged Dna-Binding Protein		2e-07
3ei4_B	436	Structure Of The Hsddb1-Hsddb2 Complex Length = 436		2e-07
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-05
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-05
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		3e-05
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		9e-05
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		1e-04
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		1e-04
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		1e-04
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		6e-04
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		7e-04
2gnq_A	336	Structure Of Wdr5 Length = 336		7e-04
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		7e-04
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		7e-04
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		7e-04
2h9l_A	329	Wdr5delta23 Length = 329		7e-04
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		7e-04
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		7e-04
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		8e-04
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		8e-04
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		8e-04
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		8e-04
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		8e-04
2g99_A	308	Structural Basis For The Specific Recognition Of Me		8e-04
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		8e-04

>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 436

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 100/244 (40%), Gaps = 20/244 (8%)
Query: 421 TRSLCAAKVGSSAWPCLHT-LTVSGNHMGDENRSF--------RPRQFEYHPSISCLMVF 471
            R+L   K+G ++WP +   L  S  H  D  R          R     +HP+    +  
Sbjct: 78  VRTLHQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAV 137
Query: 472 GTLDGXXXXXXXXXXXXXSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM 531
           G+  G             ++I   GA  S+ GL +     ++  A S  G+ +L D +  
Sbjct: 138 GSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG- 196
Query: 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADM 591
             +I  +   + T+         S+ V++   + +      N+ L +++ G+ L     M
Sbjct: 197 --NILRVFASSDTINI----WFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLR-M 248
Query: 592 HKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM--VCFSPDD 649
           HK+ +  V  +       AT+S DQ VK+WDLRQ   +  +  S    + +   CFSPD 
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 650 HYLL 653
             LL
Sbjct: 309 ARLL 312

>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 435

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 100/244 (40%), Gaps = 20/244 (8%)
Query: 421 TRSLCAAKVGSSAWPCLHT-LTVSGNHMGDENRSF--------RPRQFEYHPSISCLMVF 471
            R+L   K+G ++WP +   L  S  H  D  R          R     +HP+    +  
Sbjct: 78  VRTLHQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAV 137
Query: 472 GTLDGXXXXXXXXXXXXXSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM 531
           G+  G             ++I   GA  S+ GL +     ++  A S  G+ +L D +  
Sbjct: 138 GSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG- 196
Query: 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADM 591
             +I  +   + T+         S+ V++   + +      N+ L +++ G+ L     M
Sbjct: 197 --NILRVFASSDTINI----WFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLR-M 248
Query: 592 HKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM--VCFSPDD 649
           HK+ +  V  +       AT+S DQ VK+WDLRQ   +  +  S    + +   CFSPD 
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 650 HYLL 653
             LL
Sbjct: 309 ARLL 312

>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex Length = 436

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 100/244 (40%), Gaps = 20/244 (8%)
Query: 421 TRSLCAAKVGSSAWPCLHT-LTVSGNHMGDENRSF--------RPRQFEYHPSISCLMVF 471
            R+L   K+G ++WP +   L  S  H  D  R          R     +HP+    +  
Sbjct: 79  VRTLHQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAV 138
Query: 472 GTLDGXXXXXXXXXXXXXSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM 531
           G+  G             ++I   GA  S+ GL +     ++  A S  G+ +L D +  
Sbjct: 139 GSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG- 197
Query: 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADM 591
             +I  +   + T+         S+ V++   + +      N+ L +++ G+ L     M
Sbjct: 198 --NILRVFASSDTINI----WFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLR-M 249
Query: 592 HKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM--VCFSPDD 649
           HK+ +  V  +       AT+S DQ VK+WDLRQ   +  +  S    + +   CFSPD 
Sbjct: 250 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 309
Query: 650 HYLL 653
             LL
Sbjct: 310 ARLL 313

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 16/172 (9%)
Query: 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS-----IRGMHYGAGTVTFDEF 550
           G      GL W       L++ SD+ ++ L+DI   P        + +  G   V  D  
Sbjct: 177 GHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVA 236
Query: 551 DQLTSVHVNSMDELFLASGYSKNIALYDI--NSGRRLQVFADMHKEHINVVKFSNHSPSI 608
             L        + LF +    + + ++D   N+  +     D H   +N + F+ +S  I
Sbjct: 237 WHLL------HESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFI 290
Query: 609 FATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGT 659
            AT S D+ V LWDLR   ++  +T  S K  +  V +SP +  +L   SGT
Sbjct: 291 LATGSADKTVALWDLRNLKLK-LHTFESHKDEIFQVHWSPHNETILA-SSGT 340

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 16/172 (9%)
Query: 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS-----IRGMHYGAGTVTFDEF 550
           G      GL W       L++ SD+ ++ L+DI   P        + +  G   V  D  
Sbjct: 177 GHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVA 236
Query: 551 DQLTSVHVNSMDELFLASGYSKNIALYDI--NSGRRLQVFADMHKEHINVVKFSNHSPSI 608
             L        + LF +    + + ++D   N+  +     D H   +N + F+ +S  I
Sbjct: 237 WHLLH------ESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFI 290
Query: 609 FATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGT 659
            AT S D+ V LWDLR   ++  +T  S K  +  V +SP +  +L   SGT
Sbjct: 291 LATGSADKTVALWDLRNLKLK-LHTFESHKDEIFQVHWSPHNETILA-SSGT 340

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 76/168 (45%), Gaps = 8/168 (4%)
Query: 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTS 555
           G      GL W       L++ SD+ ++ L+DI  +P    G    A T+       +  
Sbjct: 175 GHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPK--EGKVVDAKTIFTGHTAVVED 232
Query: 556 VHVNSMDE-LFLASGYSKNIALYDI--NSGRRLQVFADMHKEHINVVKFSNHSPSIFATS 612
           V  + + E LF +    + + ++D   N+  +     D H   +N + F+ +S  I AT 
Sbjct: 233 VSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATG 292
Query: 613 SFDQDVKLWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGT 659
           S D+ V LWDLR   ++  ++  S K  +  V +SP +  +L   SGT
Sbjct: 293 SADKTVALWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILA-SSGT 338

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 10/121 (8%)
Query: 514 LIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKN 573
           +++GS + S++++D++       GM            D +++VH N    L ++S Y   
Sbjct: 125 IVSGSFDESVRIWDVK------TGMCLKTLPA---HSDPVSAVHFNRDGSLIVSSSYDGL 175
Query: 574 IALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYT 633
             ++D  SG+ L+   D     ++ VKFS +   I A ++ D D+KLWD  +      YT
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNDLKLWDYSKGKCLKTYT 234
Query: 634 A 634
Sbjct: 235 G 235

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 8/168 (4%)
Query: 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTS 555
           G      GL W       L++ SD+ ++ L+DI   P   R +   A  +       +  
Sbjct: 179 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVI--DAKNIFTGHTAVVED 236
Query: 556 VHVNSMDE-LFLASGYSKNIALYDI--NSGRRLQVFADMHKEHINVVKFSNHSPSIFATS 612
           V  + + E LF +    + + ++D   N+  +     D H   +N + F+ +S  I AT 
Sbjct: 237 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 296
Query: 613 SFDQDVKLWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGT 659
           S D+ V LWDLR   ++  ++  S K  +  V +SP +  +L   SGT
Sbjct: 297 SADKTVALWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILA-SSGT 342

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 16/172 (9%)
Query: 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIR-----GMHYGAGTVTFDEF 550
           G      GL W       L++ SD+ ++ L+DI   P   R      +  G   V  D  
Sbjct: 181 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 240
Query: 551 DQLTSVHVNSMDELFLASGYSKNIALYDI--NSGRRLQVFADMHKEHINVVKFSNHSPSI 608
             L  +H    + LF +    + + ++D   N+  +     D H   +N + F+ +S  I
Sbjct: 241 WHL--LH----ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFI 294
Query: 609 FATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGT 659
            AT S D+ V LWDLR   ++  ++  S K  +  V +SP +  +L   SGT
Sbjct: 295 LATGSADKTVALWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILA-SSGT 344

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 8/168 (4%)
Query: 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTS 555
           G      GL W       L++ SD+ ++ L+DI   P   R +   A  +       +  
Sbjct: 183 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVI--DAKNIFTGHTAVVED 240
Query: 556 VHVNSMDE-LFLASGYSKNIALYDI--NSGRRLQVFADMHKEHINVVKFSNHSPSIFATS 612
           V  + + E LF +    + + ++D   N+  +     D H   +N + F+ +S  I AT 
Sbjct: 241 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 300
Query: 613 SFDQDVKLWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGT 659
           S D+ V LWDLR   ++  ++  S K  +  V +SP +  +L   SGT
Sbjct: 301 SADKTVALWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILA-SSGT 346

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 10/121 (8%)
Query: 514 LIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKN 573
           +++GS + S++++D++       GM            D +++VH N    L ++S Y   
Sbjct: 125 IVSGSFDESVRIWDVK------TGMCLKTLPA---HSDPVSAVHFNRDGSLIVSSSYDGL 175
Query: 574 IALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYT 633
             ++D  SG+ L+   D     ++ VKFS +   I A ++ D  +KLWD  +      YT
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKTYT 234
Query: 634 A 634
Sbjct: 235 G 235

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 12/122 (9%)
Query: 514 LIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEF-DQLTSVHVNSMDELFLASGYSK 572
           +++GS + S++++D++           G    T     D +++VH N    L ++S Y  
Sbjct: 144 IVSGSFDESVRIWDVK----------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 193
Query: 573 NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCY 632
              ++D  SG+ L+   D     ++ VKFS +   I A ++ D  +KLWD  +      Y
Sbjct: 194 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKTY 252
Query: 633 TA 634
           T 
Sbjct: 253 TG 254

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 12/122 (9%)
Query: 514 LIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEF-DQLTSVHVNSMDELFLASGYSK 572
           +++GS + S++++D++           G    T     D +++VH N    L ++S Y  
Sbjct: 146 IVSGSFDESVRIWDVK----------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 195
Query: 573 NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCY 632
              ++D  SG+ L+   D     ++ VKFS +   I A ++ D  +KLWD  +      Y
Sbjct: 196 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKTY 254
Query: 633 TA 634
           T 
Sbjct: 255 TG 256

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 551 DQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFA 610
           D +++VH N    L ++S Y     ++D  SG+ L+   D     ++ VKFS +   I A
Sbjct: 149 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 208
Query: 611 TSSFDQDVKLWDLRQKPIQPCYTA 634
            ++ D  +KLWD  +      YT 
Sbjct: 209 -ATLDNTLKLWDYSKGKCLKTYTG 231

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 12/122 (9%)
Query: 514 LIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEF-DQLTSVHVNSMDELFLASGYSK 572
           +++GS + S++++D++           G    T     D +++VH N    L ++S Y  
Sbjct: 128 IVSGSFDESVRIWDVKT----------GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Query: 573 NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCY 632
              ++D  SG+ L+   D     ++ VKFS +   I A ++ D  +KLWD  +      Y
Sbjct: 178 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKTY 236
Query: 633 TA 634
           T 
Sbjct: 237 TG 238

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 551 DQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFA 610
           D +++VH N    L ++S Y     ++D  SG+ L+   D     ++ VKFS +   I A
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 212
Query: 611 TSSFDQDVKLWDLRQKPIQPCYTA 634
            ++ D  +KLWD  +      YT 
Sbjct: 213 -ATLDNTLKLWDYSKGKCLKTYTG 235

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 551 DQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFA 610
           D +++VH N    L ++S Y     ++D  SG+ L+   D     ++ VKFS +   I A
Sbjct: 167 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 226
Query: 611 TSSFDQDVKLWDLRQKPIQPCYTA 634
            ++ D  +KLWD  +      YT 
Sbjct: 227 -ATLDNTLKLWDYSKGKCLKTYTG 249

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 551 DQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFA 610
           D +++VH N    L ++S Y     ++D  SG+ L+   D     ++ VKFS +   I A
Sbjct: 156 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 215
Query: 611 TSSFDQDVKLWDLRQKPIQPCYTA 634
            ++ D  +KLWD  +      YT 
Sbjct: 216 -ATLDNTLKLWDYSKGKCLKTYTG 238

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 551 DQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFA 610
           D +++VH N    L ++S Y     ++D  SG+ L+   D     ++ VKFS +   I A
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 212
Query: 611 TSSFDQDVKLWDLRQKPIQPCYTA 634
            ++ D  +KLWD  +      YT 
Sbjct: 213 -ATLDNTLKLWDYSKGKCLKTYTG 235

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 551 DQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFA 610
           D +++VH N    L ++S Y     ++D  SG+ L+   D     ++ VKFS +   I A
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 212
Query: 611 TSSFDQDVKLWDLRQKPIQPCYTA 634
            ++ D  +KLWD  +      YT 
Sbjct: 213 -ATLDNTLKLWDYSKGKCLKTYTG 235

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 551 DQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFA 610
           D +++VH N    L ++S Y     ++D  SG+ L+   D     ++ VKFS +   I A
Sbjct: 155 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 214
Query: 611 TSSFDQDVKLWDLRQKPIQPCYTA 634
            ++ D  +KLWD  +      YT 
Sbjct: 215 -ATLDNTLKLWDYSKGKCLKTYTG 237

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 551 DQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFA 610
           D +++VH N    L ++S Y     ++D  SG+ L+   D     ++ VKFS +   I A
Sbjct: 156 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 215
Query: 611 TSSFDQDVKLWDLRQKPIQPCYTA 634
            ++ D  +KLWD  +      YT 
Sbjct: 216 -ATLDNTLKLWDYSKGKCLKTYTG 238

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 551 DQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFA 610
           D +++VH N    L ++S Y     ++D  SG+ L+   D     ++ VKFS +   I A
Sbjct: 151 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 210
Query: 611 TSSFDQDVKLWDLRQKPIQPCYTA 634
            ++ D  +KLWD  +      YT 
Sbjct: 211 -ATLDNTLKLWDYSKGKCLKTYTG 233

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 551 DQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFA 610
           D +++VH N    L ++S Y     ++D  SG+ L+   D     ++ VKFS +   I A
Sbjct: 150 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 209
Query: 611 TSSFDQDVKLWDLRQKPIQPCYTA 634
            ++ D  +KLWD  +      YT 
Sbjct: 210 -ATLDNTLKLWDYSKGKCLKTYTG 232

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 551 DQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFA 610
           D +++VH N    L ++S Y     ++D  SG+ L+   D     ++ VKFS +   I A
Sbjct: 146 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 205
Query: 611 TSSFDQDVKLWDLRQKPIQPCYTA 634
            ++ D  +KLWD  +      YT 
Sbjct: 206 -ATLDNTLKLWDYSKGKCLKTYTG 228

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 12/122 (9%)
Query: 514 LIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEF-DQLTSVHVNSMDELFLASGYSK 572
           +++GS + S++++D++           G    T     D +++VH N    L ++S Y  
Sbjct: 122 IVSGSFDESVRIWDVKT----------GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171
Query: 573 NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCY 632
              ++D  SG+ L+   D     ++ VKFS +   I A ++ D  +KLWD  +      Y
Sbjct: 172 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKTY 230
Query: 633 TA 634
           T 
Sbjct: 231 TG 232

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	721
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.98
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.97
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.97
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.97
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.97
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.97
2pm7_B	297	Protein transport protein SEC13, protein transport	99.97
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.97
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.97
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.97
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.97
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.97
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.97
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.97
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.97
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.97
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.97
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.96
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.96
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.96
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.96
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.96
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.96
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.96
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.96
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.96
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.96
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.96
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.96
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.96
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.96
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.95
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.95
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.95
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.95
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.95
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.95
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.95
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.95
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.95
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.95
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.95
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.95
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.95
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.95
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.95
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.95
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.95
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.95
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.95
2pm7_B	297	Protein transport protein SEC13, protein transport	99.95
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.94
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.94
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.94
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.94
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.94
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.94
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.94
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.94
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.94
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.94
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.94
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.94
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.94
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.94
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.94
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.94
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.93
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.93
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.93
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.93
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.93
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.93
3jro_A	753	Fusion protein of protein transport protein SEC13	99.93
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.93
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.93
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.93
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.93
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.93
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.93
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.93
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.93
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.93
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.93
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.93
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.93
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.92
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.92
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.92
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.92
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.92
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.92
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.92
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.92
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.92
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.92
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.91
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.91
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.91
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.91
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.91
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.91
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.91
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.91
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.9
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.9
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.9
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.9
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.9
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.9
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.9
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.9
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.9
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.9
3jro_A	753	Fusion protein of protein transport protein SEC13	99.89
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.89
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.89
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.89
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.89
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.88
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.88
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.86
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.86
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.85
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.83
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.81
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.78
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.77
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.75
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.75
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.73
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.72
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.71
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.71
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.71
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.7
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.7
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.69
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.69
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.69
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.67
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.66
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.66
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.66
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.66
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.65
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.65
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.64
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.63
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.63
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.62
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.61
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.61
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.6
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.55
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.54
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.53
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.52
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.52
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.52
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.5
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.49
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.48
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.44
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.42
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.41
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.4
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.4
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.37
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.37
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.35
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.32
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.31
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.3
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.3
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.29
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.29
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.28
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.25
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.21
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.21
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.19
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.19
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.18
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.18
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.17
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.15
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.13
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.12
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.12
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.11
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.1
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.06
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.05
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.05
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.03
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.03
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.02
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.01
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.99
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.98
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.94
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.92
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.92
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.89
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.87
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.82
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.81
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.76
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.72
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.71
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.7
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.7
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.63
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.63
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.62
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.58
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.56
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.56
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.54
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.48
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.43
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.43
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.42
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.37
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.36
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.32
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.31
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.3
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.3
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.28
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.26
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.25
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.25
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.24
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.24
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.24
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.16
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.16
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.16
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.14
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.13
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.09
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.09
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.05
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.01
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.99
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.98
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.97
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.97
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.95
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.93
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.92
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.91
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	97.88
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.87
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.87
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.86
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.86
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.83
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.82
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.82
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.81
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	97.79
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	97.76
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.75
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.75
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.74
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.73
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.72
3m19_A	251	Variable lymphocyte receptor A diversity region; a	97.72
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.71
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	97.71
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.7
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.7
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.69
3m19_A	251	Variable lymphocyte receptor A diversity region; a	97.69
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	97.68
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.68
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	97.67
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.67
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	97.66
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.66
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.65
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.65
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.64
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.63
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	97.63
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.63
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.62
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.61
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.61
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	97.61
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.6
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.59
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.57
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.57
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	97.56
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	97.54
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.54
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.54
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.53
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	97.52
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.51
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.5
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.5
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.5
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	97.49
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.48
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	97.48
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.47
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.46
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	97.45
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.45
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	97.41
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.4
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.39
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	97.38
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.37
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	97.37
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.35
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.34
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.34
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	97.34
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.33
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.32
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	97.32
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.32
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.32
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	97.31
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	97.31
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	97.3
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.3
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	97.3
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.28
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.27
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.27
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	97.25
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.25
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.25
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.23
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	97.22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	97.2
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	97.19
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	97.16
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	97.13
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	97.1
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	97.09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	97.09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	97.07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	97.07
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.06
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.04
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.01
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	97.01
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.0
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	96.99
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	96.99
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	96.99
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	96.98
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	96.93
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	96.93
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	96.93
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	96.92
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.89
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	96.87
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	96.86
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	96.85
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	96.84
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	96.84
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.83
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	96.83
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.82
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	96.82
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	96.81
1o6v_A	466	Internalin A; bacterial infection, extracellular r	96.8
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.79
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.78
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	96.78
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	96.77
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.69
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.69
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	96.69
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	96.69
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	96.68
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	96.68
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.67
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	96.66
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	96.65
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	96.65
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	96.64
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	96.64
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	96.64
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.61
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	96.6
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	96.59
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	96.57
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.57
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	96.55
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	96.55
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.54
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	96.5
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.5
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.49
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	96.48
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	96.46
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	96.45
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	96.44
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	96.43
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	96.43
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.41
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.38
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	96.3
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	96.25
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	96.23
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.2
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.2
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.17
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	96.1
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	96.1
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	96.09
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.03
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	95.98
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	95.94
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.9
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	95.87
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	95.74
3kya_A	496	Putative phosphatase; structural genomics, joint c	95.71
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	95.7
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	95.58
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	95.43
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	95.42
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	95.38
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	95.26
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	95.24
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	95.2
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	95.18
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	95.15
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	95.12
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	94.94
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	94.88
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	94.87
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	94.73
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	94.63
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	94.61
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	94.39
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	94.15
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	93.75
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.52
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	93.36
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	93.28
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	93.24
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	93.15
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	93.04
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	93.02
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	93.01
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	92.98
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	92.88
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	92.7
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	92.63
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	92.17
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	92.04
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	92.01
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	92.0
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	91.75
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	91.42
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	90.99
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	90.83
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	90.73
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	90.67
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	90.59
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	89.67
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	89.64
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	89.59
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	89.27
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	88.82
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	87.3
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	87.07
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	86.98
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	86.33
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	84.3
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	82.04
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	81.25
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	80.7

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.2e-30  Score=273.51  Aligned_cols=227  Identities=19%  Similarity=0.283  Sum_probs=193.8

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|++++|+| ++.++++|+.||+|++||+.++..+..+.  +|..+|.+++|+ +++++|++|+.|++|++||+.+++..
T Consensus        15 ~V~~~~fsp-~~~~l~s~~~dg~v~lWd~~~~~~~~~~~--~~~~~v~~~~~~-~~~~~l~s~s~d~~i~vwd~~~~~~~   90 (304)
T 2ynn_A           15 RVKGIDFHP-TEPWVLTTLYSGRVELWNYETQVEVRSIQ--VTETPVRAGKFI-ARKNWIIVGSDDFRIRVFNYNTGEKV   90 (304)
T ss_dssp             CEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEE--CCSSCEEEEEEE-GGGTEEEEEETTSEEEEEETTTCCEE
T ss_pred             ceEEEEECC-CCCEEEEEcCCCcEEEEECCCCceeEEee--ccCCcEEEEEEe-CCCCEEEEECCCCEEEEEECCCCcEE
Confidence            599999999 99999999999999999999999998887  788999999998 78899999999999999999986541


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc-EEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR-RLQVFADMHKEHINVVKFSNHSPSIFATSS  613 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~-~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs  613 (721)
                               .....|...|.+++|+|++..+++++.|++|++||++++. ....+.+ |...|.+++|+|.++.++++|+
T Consensus        91 ---------~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~-h~~~v~~v~~~p~~~~~l~sgs  160 (304)
T 2ynn_A           91 ---------VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG-HEHFVMCVAFNPKDPSTFASGC  160 (304)
T ss_dssp             ---------EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECC-CCSCEEEEEECTTCTTEEEEEE
T ss_pred             ---------EEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcc-cCCcEEEEEECCCCCCEEEEEe
Confidence                     1122466789999999999999999999999999999874 4566766 9999999999996558999999


Q ss_pred             CCCcEEEEECCCCCceeEEEecCCCCeE-EEEEec--CCCEEEEEeCCCcEEEEEcCCC----cccccccCeEEEEECCC
Q 004969          614 FDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSP--DDHYLLGKGSGTSMFVQSLRGD----PFRDFNMSILAAYTRPS  686 (721)
Q Consensus       614 ~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSp--dg~~Lasgs~Dg~I~VWDl~g~----~l~~~~~~V~~v~fsP~  686 (721)
                      .|++|++||+++........ .++...+ .+.|+|  ++.+|++|+.|+.|++||++..    .+.+|...|..++|+|+
T Consensus       161 ~D~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~  239 (304)
T 2ynn_A          161 LDRTVKVWSLGQSTPNFTLT-TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT  239 (304)
T ss_dssp             TTSEEEEEETTCSSCSEEEE-CCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSS
T ss_pred             CCCeEEEEECCCCCccceec-cCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCC
Confidence            99999999998875433332 3343444 788876  7889999999999999999843    35667789999999999


Q ss_pred             CCcccccccEEEEecCC
Q 004969          687 SKSEIVKVNLLASTDHC  703 (721)
Q Consensus       687 ~~~~~v~v~lLASgs~~  703 (721)
                      +       ++|++|+..
T Consensus       240 ~-------~~l~s~s~D  249 (304)
T 2ynn_A          240 L-------PIIISGSED  249 (304)
T ss_dssp             S-------SEEEEEETT
T ss_pred             C-------CEEEEEcCC
Confidence            9       899999876

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.98  E-value=1.2e-29  Score=272.03  Aligned_cols=236  Identities=19%  Similarity=0.248  Sum_probs=198.1

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|++++|+| +++++++|+.||+|+|||..++..+..+.  .|...|.+++|+ ++++++++|+.|+.|++|++.+....
T Consensus        57 ~v~~~~~s~-d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~--~~~~~v~~~~~s-~~~~~l~s~~~d~~v~iw~~~~~~~~  132 (340)
T 1got_B           57 KIYAMHWGT-DSRLLLSASQDGKLIIWDSYTTNKVHAIP--LRSSWVMTCAYA-PSGNYVACGGLDNICSIYNLKTREGN  132 (340)
T ss_dssp             CEEEEEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEE--CSSSCEEEEEEC-TTSSEEEEEETTCEEEEEETTTCSBS
T ss_pred             ceEEEEECC-CCCEEEEEeCCCcEEEEECCCCCcceEee--cCCccEEEEEEC-CCCCEEEEEeCCCeEEEEECccCCCc
Confidence            599999999 99999999999999999999999988887  788999999998 68899999999999999999765321


Q ss_pred             c---cccccC--------------------------------cceeEe-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 004969          535 I---RGMHYG--------------------------------AGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYD  578 (721)
Q Consensus       535 ~---~~~~~~--------------------------------~~~~~~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWD  578 (721)
                      .   ..+.++                                .....+ .|...|.+++|+|++..+++++.|++|++||
T Consensus       133 ~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd  212 (340)
T 1got_B          133 VRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD  212 (340)
T ss_dssp             CEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            0   001000                                011122 2567899999999999999999999999999


Q ss_pred             CCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeC
Q 004969          579 INSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGS  657 (721)
Q Consensus       579 l~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~  657 (721)
                      +++++.+..+.+ |...|.+++|+|++ .++++|+.||+|++||+++++....+....+...+ +++|+|+|++|++|+.
T Consensus       213 ~~~~~~~~~~~~-h~~~v~~v~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~  290 (340)
T 1got_B          213 VREGMCRQTFTG-HESDINAICFFPNG-NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD  290 (340)
T ss_dssp             TTTCSEEEEECC-CSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEET
T ss_pred             CCCCeeEEEEcC-CcCCEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECC
Confidence            999999999987 99999999999999 89999999999999999987543333333333334 8999999999999999


Q ss_pred             CCcEEEEEcCC-C---cccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          658 GTSMFVQSLRG-D---PFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       658 Dg~I~VWDl~g-~---~l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      ||.|++||+.. .   .+.+|...|.+++|+|++       ..||||+..
T Consensus       291 d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg-------~~l~s~s~D  333 (340)
T 1got_B          291 DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG-------MAVATGSWD  333 (340)
T ss_dssp             TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-------SCEEEEETT
T ss_pred             CCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCC-------CEEEEEcCC
Confidence            99999999873 2   356778899999999999       899999876

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.97  E-value=4.7e-30  Score=277.50  Aligned_cols=228  Identities=13%  Similarity=0.158  Sum_probs=189.6

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEe--ecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYI--PSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP  532 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l--~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~  532 (721)
                      .|.+++|+| + +.+++|+.||+|+|||+.+++.....  ...+|.+.|++++|+ +++++|++|+.||+|++||+.+++
T Consensus        84 ~v~~~~~s~-d-~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~s-pdg~~l~sgs~d~~i~iwd~~~~~  160 (344)
T 4gqb_B           84 GVADLTWVG-E-RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVL-SSGTQAVSGSKDICIKVWDLAQQV  160 (344)
T ss_dssp             CEEEEEEET-T-TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTE
T ss_pred             CEEEEEEeC-C-CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEEC-CCCCEEEEEeCCCeEEEEECCCCc
Confidence            489999999 5 57889999999999999988754433  234899999999998 789999999999999999999864


Q ss_pred             CcccccccCcceeEe-ccCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCCcEEEEEcc-ccCCCeEEEEEcCCCCcEE
Q 004969          533 PSIRGMHYGAGTVTF-DEFDQLTSVHVNSMDE-LFLASGYSKNIALYDINSGRRLQVFAD-MHKEHINVVKFSNHSPSIF  609 (721)
Q Consensus       533 ~~~~~~~~~~~~~~~-~~~~~V~sv~~sp~~~-~lls~g~Dg~IrlWDl~s~~~v~~l~~-~h~~~V~sI~fsPdg~~lL  609 (721)
                      .          ...+ .|...|.+++|++++. .+++++.|++|++||+++++....+.. .|...+.+++|+|++..++
T Consensus       161 ~----------~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l  230 (344)
T 4gqb_B          161 V----------LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVF  230 (344)
T ss_dssp             E----------EEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEE
T ss_pred             E----------EEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcce
Confidence            3          2222 3667899999999885 678889999999999999998887752 2566799999999876899


Q ss_pred             EEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCC-CEEEEEeCCCcEEEEEcCCCc---ccccccCeEEEEEC
Q 004969          610 ATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDD-HYLLGKGSGTSMFVQSLRGDP---FRDFNMSILAAYTR  684 (721)
Q Consensus       610 aSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg-~~Lasgs~Dg~I~VWDl~g~~---l~~~~~~V~~v~fs  684 (721)
                      ++|+.||+|++||++++++  +..+.+|...+ +++|+|+| ++|++|+.|++|+|||++...   +.+|...|.+++|+
T Consensus       231 ~sg~~dg~v~~wd~~~~~~--~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~s  308 (344)
T 4gqb_B          231 VFGDENGTVSLVDTKSTSC--VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWS  308 (344)
T ss_dssp             EEEETTSEEEEEESCC--C--CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEEC
T ss_pred             EEeccCCcEEEEECCCCcE--EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEe
Confidence            9999999999999999854  56677888877 89999998 589999999999999998443   45678899999999


Q ss_pred             CCCCcccccccEEEEecCC
Q 004969          685 PSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       685 P~~~~~~v~v~lLASgs~~  703 (721)
                      |++.      .+|+|||..
T Consensus       309 p~~~------~llas~s~D  321 (344)
T 4gqb_B          309 PLNH------SLLTTVGWD  321 (344)
T ss_dssp             SSST------TEEEEEETT
T ss_pred             CCCC------eEEEEEcCC
Confidence            9983      578888865

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.97  E-value=1.7e-29  Score=269.74  Aligned_cols=225  Identities=18%  Similarity=0.215  Sum_probs=200.0

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|.+++|+| ++.++++|+.||+|++||+.+++.+..+.  .|...+.+++|+ +++++|++|+.||.|++||+++++..
T Consensus        82 ~v~~~~~~~-~~~~l~s~s~D~~i~lWd~~~~~~~~~~~--~~~~~~~~~~~s-pdg~~l~~g~~dg~v~i~~~~~~~~~  157 (321)
T 3ow8_A           82 GVVSVDISH-TLPIAASSSLDAHIRLWDLENGKQIKSID--AGPVDAWTLAFS-PDSQYLATGTHVGKVNIFGVESGKKE  157 (321)
T ss_dssp             CEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEE--CCTTCCCCEEEC-TTSSEEEEECTTSEEEEEETTTCSEE
T ss_pred             CEEEEEECC-CCCEEEEEeCCCcEEEEECCCCCEEEEEe--CCCccEEEEEEC-CCCCEEEEEcCCCcEEEEEcCCCcee
Confidence            589999999 89999999999999999999999998887  777889999998 78999999999999999999886542


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF  614 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~  614 (721)
                               .....+...|.+++|+|++..+++++.||.|++||+++++.+..+.+ |...|.+++|+|++ .+|++|+.
T Consensus       158 ---------~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~spd~-~~l~s~s~  226 (321)
T 3ow8_A          158 ---------YSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEG-HAMPIRSLTFSPDS-QLLVTASD  226 (321)
T ss_dssp             ---------EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCCCEEEECTTS-CEEEEECT
T ss_pred             ---------EEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcc-cCCceeEEEEcCCC-CEEEEEcC
Confidence                     11123445689999999999999999999999999999999999987 99999999999999 79999999


Q ss_pred             CCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC-Cc---ccccccCeEEEEECCCCCc
Q 004969          615 DQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG-DP---FRDFNMSILAAYTRPSSKS  689 (721)
Q Consensus       615 DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g-~~---l~~~~~~V~~v~fsP~~~~  689 (721)
                      |++|++||++++..  ...+.+|...+ +++|+|++.+|++++.|+.|++||++. ..   +..|...|.+++|+|++  
T Consensus       227 dg~i~iwd~~~~~~--~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g--  302 (321)
T 3ow8_A          227 DGYIKIYDVQHANL--AGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNG--  302 (321)
T ss_dssp             TSCEEEEETTTCCE--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS--
T ss_pred             CCeEEEEECCCcce--eEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCC--
Confidence            99999999998754  55677888777 899999999999999999999999983 32   45677899999999999  


Q ss_pred             ccccccEEEEecCC
Q 004969          690 EIVKVNLLASTDHC  703 (721)
Q Consensus       690 ~~v~v~lLASgs~~  703 (721)
                           ..|++++..
T Consensus       303 -----~~l~s~~~d  311 (321)
T 3ow8_A          303 -----SKIVSVGDD  311 (321)
T ss_dssp             -----SEEEEEETT
T ss_pred             -----CEEEEEeCC
Confidence                 899999876

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.97  E-value=9.6e-30  Score=280.66  Aligned_cols=225  Identities=18%  Similarity=0.304  Sum_probs=199.5

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|++++|+| ++.++++|+.||+|+|||+.+++....+.  +|.+.|++++|+ +++.+|++|+.||+|++||+.+++..
T Consensus       110 ~V~~~~~~p-~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~--~h~~~V~~v~~~-~~~~~l~sgs~D~~i~iwd~~~~~~~  185 (410)
T 1vyh_C          110 PVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLK--GHTDSVQDISFD-HSGKLLASCSADMTIKLWDFQGFECI  185 (410)
T ss_dssp             CEEEEEECS-SSSEEEEEESSSCEEEEETTTCCCCEEEC--CCSSCEEEEEEC-TTSSEEEEEETTSCCCEEETTSSCEE
T ss_pred             cEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEEe--ccCCcEEEEEEc-CCCCEEEEEeCCCeEEEEeCCCCcee
Confidence            599999999 89999999999999999999999988887  899999999998 68899999999999999999875431


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF  614 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~  614 (721)
                       ..+        ..|...|.+++|+|++..+++++.|++|++||++++..+..+.+ |...|.++.|+|++ .++++|+.
T Consensus       186 -~~~--------~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~-h~~~v~~~~~~~~g-~~l~s~s~  254 (410)
T 1vyh_C          186 -RTM--------HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG-HREWVRMVRPNQDG-TLIASCSN  254 (410)
T ss_dssp             -ECC--------CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECTTS-SEEEEEET
T ss_pred             -EEE--------cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeC-CCccEEEEEECCCC-CEEEEEcC
Confidence             111        23556799999999999999999999999999999999999997 99999999999999 89999999


Q ss_pred             CCcEEEEECCCCCceeEEEecCCCCeE-EEEEecC--------------------CCEEEEEeCCCcEEEEEcC-CCc--
Q 004969          615 DQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPD--------------------DHYLLGKGSGTSMFVQSLR-GDP--  670 (721)
Q Consensus       615 DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpd--------------------g~~Lasgs~Dg~I~VWDl~-g~~--  670 (721)
                      |++|++||++++.+  ...+.+|...+ +++|+|+                    |.+|++|+.|+.|++||++ +..  
T Consensus       255 D~~v~vwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~  332 (410)
T 1vyh_C          255 DQTVRVWVVATKEC--KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM  332 (410)
T ss_dssp             TSCEEEEETTTCCE--EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEE
T ss_pred             CCeEEEEECCCCce--eeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEE
Confidence            99999999998855  45667777777 8999996                    7799999999999999998 332  


Q ss_pred             -ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          671 -FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       671 -l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                       +.+|...|.++.|+|++       ..|++|+..
T Consensus       333 ~~~~h~~~v~~v~~~~~g-------~~l~s~s~D  359 (410)
T 1vyh_C          333 TLVGHDNWVRGVLFHSGG-------KFILSCADD  359 (410)
T ss_dssp             EEECCSSCEEEEEECSSS-------SCEEEEETT
T ss_pred             EEECCCCcEEEEEEcCCC-------CEEEEEeCC
Confidence             45677889999999999       888888876

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.97  E-value=5.2e-29  Score=269.40  Aligned_cols=228  Identities=18%  Similarity=0.264  Sum_probs=187.8

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeec----------------------------------------
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPS----------------------------------------  494 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~----------------------------------------  494 (721)
                      .|++++|+| ++.+|++|+.||+|+|||..+++....+..                                        
T Consensus        66 ~V~~~~~s~-d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~  144 (354)
T 2pbi_B           66 KVLCMDWCK-DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMA  144 (354)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSG
T ss_pred             eEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccccccc
Confidence            599999999 899999999999999999887765544331                                        


Q ss_pred             ------CCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEe-ccCCCeEEEEEecC--CCEE
Q 004969          495 ------FGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTF-DEFDQLTSVHVNSM--DELF  565 (721)
Q Consensus       495 ------~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~-~~~~~V~sv~~sp~--~~~l  565 (721)
                            .+|.+.|.+++|+ +++..|++|+.||+|++||+++++.          ...+ .|...|.+++++|.  +..+
T Consensus       145 ~~~~~~~~h~~~v~~~~~~-~~~~~l~t~s~D~~v~lwd~~~~~~----------~~~~~~h~~~v~~~~~~~~~~g~~l  213 (354)
T 2pbi_B          145 AKKKSVAMHTNYLSACSFT-NSDMQILTASGDGTCALWDVESGQL----------LQSFHGHGADVLCLDLAPSETGNTF  213 (354)
T ss_dssp             GGCEEEEECSSCEEEEEEC-SSSSEEEEEETTSEEEEEETTTCCE----------EEEEECCSSCEEEEEECCCSSCCEE
T ss_pred             ccceeeeccCCcEEEEEEe-CCCCEEEEEeCCCcEEEEeCCCCeE----------EEEEcCCCCCeEEEEEEeCCCCCEE
Confidence                  1466778888887 5777888888888888888887543          1222 35567899999874  6799


Q ss_pred             EEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCC-CeEEEE
Q 004969          566 LASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSK-GNVMVC  644 (721)
Q Consensus       566 ls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~-~~vsl~  644 (721)
                      ++++.||+|++||+++++.+..+.+ |...|++++|+|++ ..+++|+.|++|++||++++.....+....+. ...+++
T Consensus       214 ~sgs~Dg~v~~wd~~~~~~~~~~~~-h~~~v~~v~~~p~~-~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~  291 (354)
T 2pbi_B          214 VSGGCDKKAMVWDMRSGQCVQAFET-HESDVNSVRYYPSG-DAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVD  291 (354)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred             EEEeCCCeEEEEECCCCcEEEEecC-CCCCeEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEE
Confidence            9999999999999999999999987 99999999999999 79999999999999999987544333333332 334899


Q ss_pred             EecCCCEEEEEeCCCcEEEEEcC-CCc---ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          645 FSPDDHYLLGKGSGTSMFVQSLR-GDP---FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       645 fSpdg~~Lasgs~Dg~I~VWDl~-g~~---l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      |+|+|++|++|+.|+.|++||+. +..   +.+|...|.+++|+|++       ..||+|+..
T Consensus       292 ~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg-------~~l~sgs~D  347 (354)
T 2pbi_B          292 FSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDG-------TAFCSGSWD  347 (354)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTS-------SCEEEEETT
T ss_pred             EeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCC-------CEEEEEcCC
Confidence            99999999999999999999986 433   45678899999999999       899999876

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.97  E-value=1.4e-29  Score=279.41  Aligned_cols=226  Identities=10%  Similarity=0.178  Sum_probs=200.0

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|++++|+| ++.++++|+.||+|++||+.+++++..+.  +|...|.+++|+ +++++|++|+.||+|++||+.++...
T Consensus       152 ~V~~v~~~~-~~~~l~sgs~D~~i~iwd~~~~~~~~~~~--~h~~~V~~v~~~-p~~~~l~s~s~D~~i~~wd~~~~~~~  227 (410)
T 1vyh_C          152 SVQDISFDH-SGKLLASCSADMTIKLWDFQGFECIRTMH--GHDHNVSSVSIM-PNGDHIVSASRDKTIKMWEVQTGYCV  227 (410)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSCCCEEETTSSCEEECCC--CCSSCEEEEEEC-SSSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             cEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEEc--CCCCCEEEEEEe-CCCCEEEEEeCCCeEEEEECCCCcEE
Confidence            699999999 89999999999999999999999888876  899999999998 68899999999999999999986541


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCC---------
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHS---------  605 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg---------  605 (721)
                       .        ....|...|.++.+++++..+++++.|++|++||+++++....+.+ |...|.+++|+|++         
T Consensus       228 -~--------~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~  297 (410)
T 1vyh_C          228 -K--------TFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE-HRHVVECISWAPESSYSSISEAT  297 (410)
T ss_dssp             -E--------EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECCSCGGGGGGGCC
T ss_pred             -E--------EEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecC-CCceEEEEEEcCcccccchhhhc
Confidence             1        1123556799999999999999999999999999999999999987 99999999999963         


Q ss_pred             ----------CcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC-C---c
Q 004969          606 ----------PSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG-D---P  670 (721)
Q Consensus       606 ----------~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g-~---~  670 (721)
                                +.++++|+.|++|++||++++.+  +..+.+|...+ +++|+|+|++|++|+.||.|++||++. .   .
T Consensus       298 ~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~--~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~  375 (410)
T 1vyh_C          298 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC--LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT  375 (410)
T ss_dssp             SCC-------CCEEEEEETTSEEEEEETTTTEE--EEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEE
T ss_pred             cccccccCCCCCEEEEEeCCCeEEEEECCCCce--EEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEE
Confidence                      25899999999999999998844  56667788877 899999999999999999999999973 2   3


Q ss_pred             ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          671 FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       671 l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      +..|...|.+++|+|++       ++|++|+..
T Consensus       376 ~~~h~~~v~~l~~~~~~-------~~l~sgs~D  401 (410)
T 1vyh_C          376 LNAHEHFVTSLDFHKTA-------PYVVTGSVD  401 (410)
T ss_dssp             EECCSSCEEEEEECSSS-------SCEEEEETT
T ss_pred             EcCCCCcEEEEEEcCCC-------CEEEEEeCC
Confidence            55677899999999999       899999876

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.97  E-value=2.1e-29  Score=265.05  Aligned_cols=231  Identities=16%  Similarity=0.174  Sum_probs=190.4

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCC--eEEEEeecCCCCCCeEEEEEeeC-CCCEEEEEeCCCeEEEEEcCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENE--NIVSYIPSFGAMNSVLGLCWLKK-YPSKLIAGSDNGSLKLYDIRHM  531 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg--~~i~~l~~~~H~~~V~sl~fsp~-d~~~LaSgs~DGtVrIWDi~~~  531 (721)
                      .|++++|+| ++++||+|+.||+|+|||+.++  +.+.++.  +|.++|++++|+++ ++++|++|+.||+|++||++++
T Consensus        11 ~V~~~~~s~-~g~~las~s~D~~v~iw~~~~~~~~~~~~l~--gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~   87 (297)
T 2pm7_B           11 MIHDAVMDY-YGKRMATCSSDKTIKIFEVEGETHKLIDTLT--GHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENG   87 (297)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSCEEEEEBCSSCBCCCEEEC--CCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSS
T ss_pred             ceEEEEECC-CCCEEEEEeCCCEEEEEecCCCCcEEEEEEc--cccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCC
Confidence            599999999 9999999999999999999753  5566666  89999999999754 4789999999999999999875


Q ss_pred             CCcccccccCcceeEeccCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCCc--EEEEEccccCCCeEEEEEcCCC--
Q 004969          532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSM--DELFLASGYSKNIALYDINSGR--RLQVFADMHKEHINVVKFSNHS--  605 (721)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~--~~~lls~g~Dg~IrlWDl~s~~--~v~~l~~~h~~~V~sI~fsPdg--  605 (721)
                      ....       ......|...|.+++|+|+  +..+++++.|++|++||++++.  ....+.+ |...|.+++|+|++  
T Consensus        88 ~~~~-------~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~  159 (297)
T 2pm7_B           88 RWSQ-------IAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDA-HAIGVNSASWAPATIE  159 (297)
T ss_dssp             CBCC-------CEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEEC-CSSCEEEEEECCCC--
T ss_pred             ceEE-------EEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeec-ccCccceEeecCCccc
Confidence            4210       0112235678999999997  7899999999999999998763  2345555 99999999999973  


Q ss_pred             ----------CcEEEEEECCCcEEEEECCCCCc--eeEEEecCCCCeE-EEEEecCC---CEEEEEeCCCcEEEEEcCCC
Q 004969          606 ----------PSIFATSSFDQDVKLWDLRQKPI--QPCYTASSSKGNV-MVCFSPDD---HYLLGKGSGTSMFVQSLRGD  669 (721)
Q Consensus       606 ----------~~lLaSgs~DgtIrIWDlrs~~~--~~~~~~~~~~~~v-sl~fSpdg---~~Lasgs~Dg~I~VWDl~g~  669 (721)
                                +.+|++|+.|++|++||++++..  .....+.+|...+ +++|+|++   .+|++++.|++|++||++..
T Consensus       160 ~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~  239 (297)
T 2pm7_B          160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE  239 (297)
T ss_dssp             ----------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred             ccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence                      26899999999999999987642  2345678888887 89999985   89999999999999998742


Q ss_pred             -------cc--cccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          670 -------PF--RDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       670 -------~l--~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                             .+  ..|...|.+++|+|++       ++||+|+..
T Consensus       240 ~~~~~~~~~~~~~~~~~v~~~~~s~~g-------~~las~~~D  275 (297)
T 2pm7_B          240 QGPWKKTLLKEEKFPDVLWRASWSLSG-------NVLALSGGD  275 (297)
T ss_dssp             TSCCEEEESSSSCCSSCEEEEEECSSS-------CCEEEEETT
T ss_pred             CCccceeeeecccCCCcEEEEEECCCC-------CEEEEEcCC
Confidence                   12  3456789999999999       899999876

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.97  E-value=5.7e-29  Score=265.61  Aligned_cols=228  Identities=12%  Similarity=0.139  Sum_probs=194.9

Q ss_pred             CeEEEEEeCC---CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 004969          455 RPRQFEYHPS---ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM  531 (721)
Q Consensus       455 ~V~~lafsP~---dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~  531 (721)
                      .|++++|+|.   ++.+|++|+.||+|+||++.+++........+|...|.+++|+ +++..+++++.||+|++||+.++
T Consensus        34 ~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~-~~~~~l~s~s~D~~i~lWd~~~~  112 (321)
T 3ow8_A           34 AIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDIS-HTLPIAASSSLDAHIRLWDLENG  112 (321)
T ss_dssp             CEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC-SSSSEEEEEETTSEEEEEETTTT
T ss_pred             cEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEEC-CCCCEEEEEeCCCcEEEEECCCC
Confidence            5999999983   4679999999999999999887765444445999999999998 68899999999999999999886


Q ss_pred             CCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEE
Q 004969          532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFAT  611 (721)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaS  611 (721)
                      +..         .....+...+.+++|+|++..+++++.||.|++||+++++....+.. |...|.+++|+|++ .++++
T Consensus       113 ~~~---------~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~-~~~~v~~~~~spdg-~~las  181 (321)
T 3ow8_A          113 KQI---------KSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDT-RGKFILSIAYSPDG-KYLAS  181 (321)
T ss_dssp             EEE---------EEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEEC-SSSCEEEEEECTTS-SEEEE
T ss_pred             CEE---------EEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecC-CCceEEEEEECCCC-CEEEE
Confidence            531         11123445688999999999999999999999999999999998886 89999999999999 89999


Q ss_pred             EECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCC----cccccccCeEEEEECCC
Q 004969          612 SSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGD----PFRDFNMSILAAYTRPS  686 (721)
Q Consensus       612 gs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~----~l~~~~~~V~~v~fsP~  686 (721)
                      |+.||.|++||+++++  .+..+.+|...+ +++|+|++++|++|+.|+.|++||++..    .+..|...|.+++|+|+
T Consensus       182 g~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~  259 (321)
T 3ow8_A          182 GAIDGIINIFDIATGK--LLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD  259 (321)
T ss_dssp             EETTSCEEEEETTTTE--EEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred             EcCCCeEEEEECCCCc--EEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCC
Confidence            9999999999999884  466677887777 9999999999999999999999999832    24567788999999999


Q ss_pred             CCcccccccEEEEecCC
Q 004969          687 SKSEIVKVNLLASTDHC  703 (721)
Q Consensus       687 ~~~~~v~v~lLASgs~~  703 (721)
                      +       ..|++|+..
T Consensus       260 ~-------~~l~s~s~D  269 (321)
T 3ow8_A          260 D-------THFVSSSSD  269 (321)
T ss_dssp             S-------SEEEEEETT
T ss_pred             C-------CEEEEEeCC
Confidence            9       889999876

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.97  E-value=4e-29  Score=268.83  Aligned_cols=230  Identities=16%  Similarity=0.216  Sum_probs=192.3

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEe-ecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYI-PSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l-~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~  533 (721)
                      .|++++|+| ++++||+|+.||+|+|||+.++...... ...+|...|.+++|+ +++++|++|+.|++|++||+..+..
T Consensus        18 ~v~~l~~sp-~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~s-p~g~~l~s~s~D~~v~iw~~~~~~~   95 (345)
T 3fm0_A           18 RCWFLAWNP-AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWS-PCGNYLASASFDATTCIWKKNQDDF   95 (345)
T ss_dssp             CEEEEEECT-TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEEC-TTSSEEEEEETTSCEEEEEECCC-E
T ss_pred             cEEEEEECC-CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEEC-CCCCEEEEEECCCcEEEEEccCCCe
Confidence            489999999 9999999999999999999988654322 234899999999998 6899999999999999999987532


Q ss_pred             cccccccCcceeEe-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc---EEEEEccccCCCeEEEEEcCCCCcEE
Q 004969          534 SIRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR---RLQVFADMHKEHINVVKFSNHSPSIF  609 (721)
Q Consensus       534 ~~~~~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~---~v~~l~~~h~~~V~sI~fsPdg~~lL  609 (721)
                      .        ....+ .|...|.+++|+|++..+++++.|++|++||++++.   .+..+.+ |...|.+++|+|++ .++
T Consensus        96 ~--------~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~-~~l  165 (345)
T 3fm0_A           96 E--------CVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS-HTQDVKHVVWHPSQ-ELL  165 (345)
T ss_dssp             E--------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECC-CCSCEEEEEECSSS-SCE
T ss_pred             E--------EEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecC-cCCCeEEEEECCCC-CEE
Confidence            1        11222 356789999999999999999999999999998764   4556665 99999999999999 799


Q ss_pred             EEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC--CCc----------------
Q 004969          610 ATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR--GDP----------------  670 (721)
Q Consensus       610 aSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~--g~~----------------  670 (721)
                      ++|+.|++|++||.+++.......+.+|...+ +++|+|+|++|++|+.|+.|++|+..  +..                
T Consensus       166 ~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~  245 (345)
T 3fm0_A          166 ASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCIC  245 (345)
T ss_dssp             EEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEE
T ss_pred             EEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeE
Confidence            99999999999999987655567788888888 89999999999999999999999963  111                


Q ss_pred             -ccc-cccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          671 -FRD-FNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       671 -l~~-~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                       +.. |...|..++|+|++       ..||+++..
T Consensus       246 ~~~~~h~~~v~~v~~~~~~-------~~l~s~~~d  273 (345)
T 3fm0_A          246 TLSGFHSRTIYDIAWCQLT-------GALATACGD  273 (345)
T ss_dssp             EECSSCSSCEEEEEECTTT-------CCEEEEETT
T ss_pred             EecCCCCCcEEEEEEecCC-------CEEEEEeCC
Confidence             111 56689999999999       778888765

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.97  E-value=4.5e-29  Score=263.40  Aligned_cols=229  Identities=15%  Similarity=0.156  Sum_probs=193.3

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|.+++|+| +++++++|+.||+|++||+.+++.+..+.  +|.+.|++++|+ +++.+|++|+.||+|++||++++...
T Consensus        57 ~v~~~~~~~-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~-~~~~~l~sgs~D~~v~lWd~~~~~~~  132 (304)
T 2ynn_A           57 PVRAGKFIA-RKNWIIVGSDDFRIRVFNYNTGEKVVDFE--AHPDYIRSIAVH-PTKPYVLSGSDDLTVKLWNWENNWAL  132 (304)
T ss_dssp             CEEEEEEEG-GGTEEEEEETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEEC-SSSSEEEEEETTSCEEEEEGGGTTEE
T ss_pred             cEEEEEEeC-CCCEEEEECCCCEEEEEECCCCcEEEEEe--CCCCcEEEEEEc-CCCCEEEEECCCCeEEEEECCCCcch
Confidence            589999999 99999999999999999999999998887  899999999998 68899999999999999999875332


Q ss_pred             ccccccCcceeEeccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcC--CCCcEEEE
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNS-MDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSN--HSPSIFAT  611 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp-~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsP--dg~~lLaS  611 (721)
                      ..        ....|...|.+++|+| ++..+++++.|++|++||++++.....+...|...+..+.|+|  ++ .++++
T Consensus       133 ~~--------~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s  203 (304)
T 2ynn_A          133 EQ--------TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDK-PYMIT  203 (304)
T ss_dssp             EE--------EECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTC-CEEEE
T ss_pred             hh--------hhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCC-CEEEE
Confidence            11        1223567799999999 4678999999999999999988877777655778999999987  45 69999


Q ss_pred             EECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC-Cc---ccccccCeEEEEECCC
Q 004969          612 SSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG-DP---FRDFNMSILAAYTRPS  686 (721)
Q Consensus       612 gs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g-~~---l~~~~~~V~~v~fsP~  686 (721)
                      |+.|++|++||++++++  +..+.+|...+ +++|+|++++|++|+.||.|++||++. +.   +..+...+.+++|+|.
T Consensus       204 ~s~D~~i~iWd~~~~~~--~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~  281 (304)
T 2ynn_A          204 ASDDLTIKIWDYQTKSC--VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPT  281 (304)
T ss_dssp             EETTSEEEEEETTTTEE--EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTT
T ss_pred             EcCCCeEEEEeCCCCcc--ceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCC
Confidence            99999999999998844  66677888877 899999999999999999999999973 32   3344568999999998


Q ss_pred             CCcccccccEEEEecCC
Q 004969          687 SKSEIVKVNLLASTDHC  703 (721)
Q Consensus       687 ~~~~~v~v~lLASgs~~  703 (721)
                      +.     ..++|+|+..
T Consensus       282 ~~-----~~~~asg~~~  293 (304)
T 2ynn_A          282 GR-----KNYIASGFDN  293 (304)
T ss_dssp             CG-----GGCEEEEETT
T ss_pred             CC-----ceEEEEecCC
Confidence            72     1257777654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.97  E-value=3e-28  Score=259.10  Aligned_cols=226  Identities=15%  Similarity=0.201  Sum_probs=189.2

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCC-----CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHEN-----ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIR  529 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~t-----g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~  529 (721)
                      .|++++|+|.++++|++|+.||+|++|++.+     +..+..+.  +|...|.+++|+ +++.+|++|+.||+|++||+.
T Consensus        19 ~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~--~h~~~v~~~~~s-~dg~~l~s~s~D~~v~~wd~~   95 (319)
T 3frx_A           19 WVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK--GHSHIVQDCTLT-ADGAYALSASWDKTLRLWDVA   95 (319)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEE--CCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETT
T ss_pred             eEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEe--CCcccEEEEEEC-CCCCEEEEEeCCCEEEEEECC
Confidence            5999999996668999999999999999864     23455565  899999999998 789999999999999999998


Q ss_pred             CCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCC----
Q 004969          530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHS----  605 (721)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg----  605 (721)
                      +++..         .....|...|.+++|+|++..+++++.|++|++||++ ++.+..+.+ |...|.++.|+|.+    
T Consensus        96 ~~~~~---------~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~-h~~~v~~~~~~~~~~~~~  164 (319)
T 3frx_A           96 TGETY---------QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLG-HNDWVSQVRVVPNEKADD  164 (319)
T ss_dssp             TTEEE---------EEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECC-CSSCEEEEEECCC-----
T ss_pred             CCCee---------EEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEec-cCCcEEEEEEccCCCCCC
Confidence            86531         1122466789999999999999999999999999997 567777876 99999999999954    


Q ss_pred             -CcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCC-cccc--cccCeEE
Q 004969          606 -PSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGD-PFRD--FNMSILA  680 (721)
Q Consensus       606 -~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~-~l~~--~~~~V~~  680 (721)
                       ...+++++.|++|++||+++.+  ....+.+|...+ +++|+|+|++|++|+.||.|++||++.. .+..  ....|.+
T Consensus       165 ~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~  242 (319)
T 3frx_A          165 DSVTIISAGNDKMVKAWNLNQFQ--IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFS  242 (319)
T ss_dssp             -CCEEEEEETTSCEEEEETTTTE--EEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEE
T ss_pred             CccEEEEEeCCCEEEEEECCcch--hheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEE
Confidence             2489999999999999999874  355667788777 8999999999999999999999999843 2222  2468999


Q ss_pred             EEECCCCCcccccccEEEEecCC
Q 004969          681 AYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       681 v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      ++|+|++       ..|++++..
T Consensus       243 ~~~sp~~-------~~la~~~~~  258 (319)
T 3frx_A          243 LAFSPNR-------YWLAAATAT  258 (319)
T ss_dssp             EEECSSS-------SEEEEEETT
T ss_pred             EEEcCCC-------CEEEEEcCC
Confidence            9999999       777777653

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.97  E-value=7.4e-28  Score=253.37  Aligned_cols=197  Identities=17%  Similarity=0.341  Sum_probs=168.8

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|++++|+| +++++++|+.||.|++|+..+++....+.  +|...|.+++|+ +++++|++|+.||.|++||+.+++..
T Consensus        25 ~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~--~h~~~v~~~~~~-~~~~~l~s~~~d~~i~vwd~~~~~~~  100 (312)
T 4ery_A           25 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTIS--GHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCL  100 (312)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             cEEEEEECC-CCCEEEEeeCCCeEEEEeCCCcccchhhc--cCCCceEEEEEc-CCCCEEEEECCCCEEEEEECCCCcEE
Confidence            599999999 99999999999999999999999888886  899999999998 68899999999999999999886531


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF  614 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~  614 (721)
                               .....|...|.+++|+|++..+++++.|+.|++||+++++.+..+.. |...|.+++|+|++ .++++|+.
T Consensus       101 ---------~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~  169 (312)
T 4ery_A          101 ---------KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDG-SLIVSSSY  169 (312)
T ss_dssp             ---------EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTS-SEEEEEET
T ss_pred             ---------EEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecC-CCCcEEEEEEcCCC-CEEEEEeC
Confidence                     11223556799999999999999999999999999999999999986 99999999999999 79999999


Q ss_pred             CCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          615 DQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       615 DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                      ||.|++||+++++...... ..+...+ .++|+|++++|++++.||.|++||++
T Consensus       170 d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~  222 (312)
T 4ery_A          170 DGLCRIWDTASGQCLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS  222 (312)
T ss_dssp             TSCEEEEETTTCCEEEEEC-CSSCCCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred             CCcEEEEECCCCceeeEEe-ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence            9999999999875433222 2333344 78888888888888878888877764

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.97  E-value=1.3e-28  Score=266.33  Aligned_cols=202  Identities=18%  Similarity=0.152  Sum_probs=170.1

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|++++|+| ++++|++|+.||+|++||+.+++.+..+.  +|.+.|++++|+|.+..+|++|+.||+|++||+++++..
T Consensus       129 ~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~--~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~  205 (344)
T 4gqb_B          129 IVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYR--AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPA  205 (344)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCE
T ss_pred             CEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEc--CcCCceEEEEecCCCCCceeeecccccccccccccccee
Confidence            599999999 99999999999999999999999999887  899999999999655678999999999999999987652


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMD-ELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS  613 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~-~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs  613 (721)
                      ...       ....+...+.+++|+|++ ..+++|+.||+|++||+++++.+..+.+ |...|++++|+|++..+|++|+
T Consensus       206 ~~~-------~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~-h~~~v~~v~fsp~g~~~lasgs  277 (344)
T 4gqb_B          206 SQI-------GCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAV-HSQCVTGLVFSPHSVPFLASLS  277 (344)
T ss_dssp             EEC-------C----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEEC-CSSCEEEEEECSSSSCCEEEEE
T ss_pred             eee-------ecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcC-CCCCEEEEEEccCCCeEEEEEe
Confidence            111       011233458999999865 4667788999999999999999999997 9999999999999867899999


Q ss_pred             CCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCC-EEEEEeCCCcEEEEEcCCCc
Q 004969          614 FDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDH-YLLGKGSGTSMFVQSLRGDP  670 (721)
Q Consensus       614 ~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~-~Lasgs~Dg~I~VWDl~g~~  670 (721)
                      .|++|+|||+++++   +..+.+|...+ +++|+|+++ +|++++.|++|++|++...+
T Consensus       278 ~D~~i~vwd~~~~~---~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          278 EDCSLAVLDSSLSE---LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             TTSCEEEECTTCCE---EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             CCCeEEEEECCCCc---EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence            99999999999874   34567888887 899999986 56789999999999998544

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.97  E-value=2.7e-28  Score=267.07  Aligned_cols=233  Identities=21%  Similarity=0.333  Sum_probs=194.1

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|++++|+| ++++|++|+.||+|+|||+.+++.+..+.  +|...|.+++|+ +++.+|++|+.||+|++||+++++. 
T Consensus       125 ~v~~v~~s~-dg~~l~s~~~d~~i~iwd~~~~~~~~~~~--~h~~~v~~~~~~-p~~~~l~s~s~d~~v~iwd~~~~~~-  199 (393)
T 1erj_A          125 YIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQ--GHEQDIYSLDYF-PSGDKLVSGSGDRTVRIWDLRTGQC-  199 (393)
T ss_dssp             BEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEE-
T ss_pred             eEEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEc--cCCCCEEEEEEc-CCCCEEEEecCCCcEEEEECCCCee-
Confidence            589999999 99999999999999999999999888887  899999999998 7889999999999999999988543 


Q ss_pred             ccccccCcceeEeccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCcEEEEEc------cccCCCeEEEEEcCCCCc
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNS-MDELFLASGYSKNIALYDINSGRRLQVFA------DMHKEHINVVKFSNHSPS  607 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp-~~~~lls~g~Dg~IrlWDl~s~~~v~~l~------~~h~~~V~sI~fsPdg~~  607 (721)
                               ...+.+...+.+++|+| ++..+++++.|+.|++||+++++.+..+.      .+|...|.+++|+|++ .
T Consensus       200 ---------~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g-~  269 (393)
T 1erj_A          200 ---------SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG-Q  269 (393)
T ss_dssp             ---------EEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS-S
T ss_pred             ---------EEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCC-C
Confidence                     33445667799999999 78899999999999999999998887762      2389999999999999 7


Q ss_pred             EEEEEECCCcEEEEECCCCCc----------eeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC-CCc---cc
Q 004969          608 IFATSSFDQDVKLWDLRQKPI----------QPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR-GDP---FR  672 (721)
Q Consensus       608 lLaSgs~DgtIrIWDlrs~~~----------~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~---l~  672 (721)
                      ++++|+.|++|++||+++...          .....+.+|...+ +++|+|++.+|++|+.|+.|++||++ +.+   +.
T Consensus       270 ~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~  349 (393)
T 1erj_A          270 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ  349 (393)
T ss_dssp             EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEC
Confidence            999999999999999986421          1234556777777 89999999999999999999999987 443   45


Q ss_pred             ccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          673 DFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       673 ~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      +|...|.+++|+|...+.. .-++||+|+..
T Consensus       350 ~h~~~v~~v~~~~~~~~~p-~~~~l~sgs~D  379 (393)
T 1erj_A          350 GHRNSVISVAVANGSSLGP-EYNVFATGSGD  379 (393)
T ss_dssp             CCSSCEEEEEECSSCTTCT-TCEEEEEEETT
T ss_pred             CCCCCEEEEEecCCcCcCC-CCCEEEEECCC
Confidence            6778999999987421100 01899999876

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.97  E-value=7.7e-29  Score=270.22  Aligned_cols=236  Identities=17%  Similarity=0.245  Sum_probs=187.9

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC-
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP-  533 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~-  533 (721)
                      .|++++|+| ++++|++|+.||+|+|||+.+++....+.  +|...|.+++|+ +++++|++|+.|+.|++||+.+... 
T Consensus        68 ~V~~~~~sp-~~~~l~s~s~D~~v~iWd~~~~~~~~~~~--~h~~~v~~~~~s-~~g~~las~~~d~~v~iw~~~~~~~~  143 (380)
T 3iz6_a           68 KVYSLDWTP-EKNWIVSASQDGRLIVWNALTSQKTHAIK--LHCPWVMECAFA-PNGQSVACGGLDSACSIFNLSSQADR  143 (380)
T ss_dssp             CEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEE--CCCTTCCCCEEC-TTSSEEEECCSSSCCEEEECCCCSSC
T ss_pred             EEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCccceEEe--cCCCCEEEEEEC-CCCCEEEEeeCCCcEEEEECCCCccc
Confidence            599999999 89999999999999999999999888887  788888888987 6788888888888888888753210 


Q ss_pred             --------ccccc------------------c-------------cCcceeE------eccCCCeEEEEEec-CCCEEEE
Q 004969          534 --------SIRGM------------------H-------------YGAGTVT------FDEFDQLTSVHVNS-MDELFLA  567 (721)
Q Consensus       534 --------~~~~~------------------~-------------~~~~~~~------~~~~~~V~sv~~sp-~~~~lls  567 (721)
                              .....                  .             .......      ..|...|.++++++ ++..+++
T Consensus       144 ~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s  223 (380)
T 3iz6_a          144 DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFIS  223 (380)
T ss_dssp             CCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEE
T ss_pred             cCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEE
Confidence                    00000                  0             0000111      13556799999987 6788999


Q ss_pred             EeCCCcEEEEECC-CCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCC-----CCeE
Q 004969          568 SGYSKNIALYDIN-SGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSS-----KGNV  641 (721)
Q Consensus       568 ~g~Dg~IrlWDl~-s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~-----~~~v  641 (721)
                      |+.|++|++||++ .++.+..+.+ |...|++++|+|++ .+|++|+.||+|++||++++.....+.....     ...+
T Consensus       224 gs~D~~v~~wd~~~~~~~~~~~~~-h~~~v~~v~~~p~~-~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v  301 (380)
T 3iz6_a          224 GSCDTTVRLWDLRITSRAVRTYHG-HEGDINSVKFFPDG-QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIV  301 (380)
T ss_dssp             EETTSCEEEEETTTTCCCCEEECC-CSSCCCEEEECTTS-SEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSC
T ss_pred             EECCCeEEEEECCCCCcceEEECC-cCCCeEEEEEecCC-CeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCce
Confidence            9999999999998 4577888887 99999999999999 7999999999999999999865444332211     1224


Q ss_pred             -EEEEecCCCEEEEEeCCCcEEEEEcCC-Cc---c----cccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          642 -MVCFSPDDHYLLGKGSGTSMFVQSLRG-DP---F----RDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       642 -sl~fSpdg~~Lasgs~Dg~I~VWDl~g-~~---l----~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                       +++|+|+|++|++|+.||.|++||+.. ..   +    ..|...|.+++|+|++       ..|+||+..
T Consensus       302 ~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-------~~l~sgs~D  365 (380)
T 3iz6_a          302 TSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDG-------SALCTGSWD  365 (380)
T ss_dssp             SEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSS-------SEEEEECTT
T ss_pred             EEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCC-------CEEEEeeCC
Confidence             899999999999999999999999862 22   1    4677899999999999       899999876

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.97  E-value=2e-29  Score=267.78  Aligned_cols=230  Identities=13%  Similarity=0.144  Sum_probs=189.4

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeE--EEEeecCCCCCCeEEEEEeeC-CCCEEEEEeCCCeEEEEEcCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENI--VSYIPSFGAMNSVLGLCWLKK-YPSKLIAGSDNGSLKLYDIRHM  531 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~--i~~l~~~~H~~~V~sl~fsp~-d~~~LaSgs~DGtVrIWDi~~~  531 (721)
                      .|++++|+| ++++||+|+.||+|+|||+.++..  +..+.  +|.+.|++++|+++ ++++|++|+.||+|++||++++
T Consensus        15 ~V~~v~~s~-~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~--gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~   91 (316)
T 3bg1_A           15 MIHDAQMDY-YGTRLATCSSDRSVKIFDVRNGGQILIADLR--GHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENG   91 (316)
T ss_dssp             CEEEEEECG-GGCEEEEEETTTEEEEEEEETTEEEEEEEEE--CCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSS
T ss_pred             eEEEeeEcC-CCCEEEEEeCCCeEEEEEecCCCcEEEEEEc--CCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCC
Confidence            599999999 999999999999999999988754  44555  89999999999754 5889999999999999999875


Q ss_pred             CCcccccccCcceeEe-ccCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCCcE---EEEEccccCCCeEEEEEcCCC
Q 004969          532 PPSIRGMHYGAGTVTF-DEFDQLTSVHVNSM--DELFLASGYSKNIALYDINSGRR---LQVFADMHKEHINVVKFSNHS  605 (721)
Q Consensus       532 ~~~~~~~~~~~~~~~~-~~~~~V~sv~~sp~--~~~lls~g~Dg~IrlWDl~s~~~---v~~l~~~h~~~V~sI~fsPdg  605 (721)
                      ...        ....+ .|...|.+++|+|+  +..+++++.|++|++||++++..   ...+.+ |...|.+++|+|++
T Consensus        92 ~~~--------~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~  162 (316)
T 3bg1_A           92 TWE--------KSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNA-HTIGCNAVSWAPAV  162 (316)
T ss_dssp             CCC--------EEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTS-SSSCBCCCEECCCC
T ss_pred             cce--------EEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeecc-ccCCcceEEEcccc
Confidence            421        11122 36678999999998  67899999999999999987632   233344 99999999999973


Q ss_pred             ----------------CcEEEEEECCCcEEEEECCCCC-ceeEEEecCCCCeE-EEEEecCC----CEEEEEeCCCcEEE
Q 004969          606 ----------------PSIFATSSFDQDVKLWDLRQKP-IQPCYTASSSKGNV-MVCFSPDD----HYLLGKGSGTSMFV  663 (721)
Q Consensus       606 ----------------~~lLaSgs~DgtIrIWDlrs~~-~~~~~~~~~~~~~v-sl~fSpdg----~~Lasgs~Dg~I~V  663 (721)
                                      ..+|++|+.|++|++||++... ......+.+|...+ +++|+|++    .+|++++.|++|++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~i  242 (316)
T 3bg1_A          163 VPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFI  242 (316)
T ss_dssp             CC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEE
T ss_pred             CCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEE
Confidence                            1589999999999999997542 23456778888887 89999987    89999999999999


Q ss_pred             EEcCC--------CcccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          664 QSLRG--------DPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       664 WDl~g--------~~l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      |+++.        ..+..|...|.+++|+|++       ++||+|+..
T Consensus       243 w~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-------~~las~~~D  283 (316)
T 3bg1_A          243 WTCDDASSNTWSPKLLHKFNDVVWHVSWSITA-------NILAVSGGD  283 (316)
T ss_dssp             EECSSTTCCCCBCCEEEECSSCEEEEEECTTT-------CCEEEEESS
T ss_pred             EEccCccccchhhhhhhcCCCcEEEEEEcCCC-------CEEEEEcCC
Confidence            99863        1245567899999999999       889998875

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.97  E-value=7.3e-28  Score=256.15  Aligned_cols=223  Identities=17%  Similarity=0.216  Sum_probs=190.2

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|++++|+| ++.++++|+.||+|++||+.+++.+..+.  +|...|.+++|+ +++.++++|+.||+|++||++.... 
T Consensus        67 ~v~~~~~s~-dg~~l~s~s~D~~v~~wd~~~~~~~~~~~--~h~~~v~~~~~~-~~~~~l~s~s~D~~i~vwd~~~~~~-  141 (319)
T 3frx_A           67 IVQDCTLTA-DGAYALSASWDKTLRLWDVATGETYQRFV--GHKSDVMSVDID-KKASMIISGSRDKTIKVWTIKGQCL-  141 (319)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEE--CCSSCEEEEEEC-TTSCEEEEEETTSCEEEEETTSCEE-
T ss_pred             cEEEEEECC-CCCEEEEEeCCCEEEEEECCCCCeeEEEc--cCCCcEEEEEEc-CCCCEEEEEeCCCeEEEEECCCCeE-
Confidence            589999999 99999999999999999999999998887  899999999998 7889999999999999999975211 


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCC------CEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcE
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMD------ELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSI  608 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~------~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~l  608 (721)
                               .....|...|.++.++|..      ..+++++.|+.|++||+++++....+.+ |...|.+++|+|++ .+
T Consensus       142 ---------~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-h~~~v~~~~~sp~g-~~  210 (319)
T 3frx_A          142 ---------ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG-HNSNINTLTASPDG-TL  210 (319)
T ss_dssp             ---------EEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECC-CCSCEEEEEECTTS-SE
T ss_pred             ---------EEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecC-CCCcEEEEEEcCCC-CE
Confidence                     1223456778999998853      4799999999999999999999999987 99999999999999 89


Q ss_pred             EEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCc------------cccccc
Q 004969          609 FATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDP------------FRDFNM  676 (721)
Q Consensus       609 LaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~------------l~~~~~  676 (721)
                      |++|+.||+|++||+++++.  +..+..+....+++|+|++.++++++ ++.+++|++....            ...+..
T Consensus       211 l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~  287 (319)
T 3frx_A          211 IASAGKDGEIMLWNLAAKKA--MYTLSAQDEVFSLAFSPNRYWLAAAT-ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEP  287 (319)
T ss_dssp             EEEEETTCEEEEEETTTTEE--EEEEECCSCEEEEEECSSSSEEEEEE-TTEEEEEEETTEEEEEEECCCCTTCCGGGCC
T ss_pred             EEEEeCCCeEEEEECCCCcE--EEEecCCCcEEEEEEcCCCCEEEEEc-CCCcEEEEeCcCeeeeccCccccccccCcCc
Confidence            99999999999999998754  55555566666999999999999887 4569999987321            122345


Q ss_pred             CeEEEEECCCCCcccccccEEEEecCC
Q 004969          677 SILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       677 ~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      .+.+++|+|++       ..|++|+..
T Consensus       288 ~v~~~~~spdg-------~~l~sg~~D  307 (319)
T 3frx_A          288 HAVSLAWSADG-------QTLFAGYTD  307 (319)
T ss_dssp             CEEEEEECTTS-------SEEEEEETT
T ss_pred             ceeEEEECCCC-------CEEEEeecC
Confidence            78999999999       899999876

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.96  E-value=7e-28  Score=259.11  Aligned_cols=231  Identities=15%  Similarity=0.202  Sum_probs=187.7

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe--EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN--IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP  532 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~--~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~  532 (721)
                      .|++++|+| ++++|++|+.||+|++|+..++.  .+..+.  +|...|.+++|+ +++++|++|+.||+|++||+..+.
T Consensus        63 ~v~~~~~sp-~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~--~h~~~v~~v~~s-p~~~~l~s~s~D~~v~iwd~~~~~  138 (345)
T 3fm0_A           63 TVRKVAWSP-CGNYLASASFDATTCIWKKNQDDFECVTTLE--GHENEVKSVAWA-PSGNLLATCSRDKSVWVWEVDEED  138 (345)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSCEEEEEECCC-EEEEEEEC--CCSSCEEEEEEC-TTSSEEEEEETTSCEEEEEECTTS
T ss_pred             cEEEEEECC-CCCEEEEEECCCcEEEEEccCCCeEEEEEcc--CCCCCceEEEEe-CCCCEEEEEECCCeEEEEECCCCC
Confidence            599999999 99999999999999999998775  345554  899999999998 689999999999999999998754


Q ss_pred             CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc--EEEEEccccCCCeEEEEEcCCCCcEEE
Q 004969          533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR--RLQVFADMHKEHINVVKFSNHSPSIFA  610 (721)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~--~v~~l~~~h~~~V~sI~fsPdg~~lLa  610 (721)
                      ....      ......|...|.+++|+|++..+++++.|++|++||.++++  ....+.+ |...|.+++|+|+| .+|+
T Consensus       139 ~~~~------~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~-h~~~v~~l~~sp~g-~~l~  210 (345)
T 3fm0_A          139 EYEC------VSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEG-HESTVWSLAFDPSG-QRLA  210 (345)
T ss_dssp             CEEE------EEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECTTS-SEEE
T ss_pred             CeEE------EEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecC-CCCceEEEEECCCC-CEEE
Confidence            3100      01122356779999999999999999999999999999875  3467776 99999999999999 8999


Q ss_pred             EEECCCcEEEEECCCCCc-------------eeEEEecC-CCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCc-----
Q 004969          611 TSSFDQDVKLWDLRQKPI-------------QPCYTASS-SKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDP-----  670 (721)
Q Consensus       611 Sgs~DgtIrIWDlrs~~~-------------~~~~~~~~-~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~-----  670 (721)
                      +|+.|++|++||......             ..+..+.+ |...+ +++|+|++..|++++.|+.|++|+.....     
T Consensus       211 s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~  290 (345)
T 3fm0_A          211 SCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQP  290 (345)
T ss_dssp             EEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSC
T ss_pred             EEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCccee
Confidence            999999999999743211             11223333 55555 89999999999999999999999986321     


Q ss_pred             --------ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          671 --------FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       671 --------l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                              ...|...|.+++|+|++.      .+||||+..
T Consensus       291 ~~~~~~~~~~~h~~~V~~v~~~p~~~------~~laS~s~D  325 (345)
T 3fm0_A          291 TFSLTAHLHQAHSQDVNCVAWNPKEP------GLLASCSDD  325 (345)
T ss_dssp             CEEEEEEETTSSSSCEEEEEECSSST------TEEEEEETT
T ss_pred             eEEEEeeecccccCcEeEeEEeCCCc------eEEEEcCCC
Confidence                    235678899999999972      489999876

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.96  E-value=4.3e-29  Score=276.90  Aligned_cols=204  Identities=24%  Similarity=0.347  Sum_probs=171.0

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      +|+||+|||.++++||+|+.||+|+|||+.++.....+...+|.+.|++|+|+|.++++|+||+.||+|++||++++...
T Consensus       121 ~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~  200 (435)
T 4e54_B          121 RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILR  200 (435)
T ss_dssp             CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEE
T ss_pred             CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCcee
Confidence            69999999988889999999999999999988776666666999999999999778899999999999999999864321


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF  614 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~  614 (721)
                        .....     -.+...+.+++|++++..+++|+.||.|++||++ ++.+..+.+ |...|.+++|+|+++.++++|+.
T Consensus       201 --~~~~~-----~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~-h~~~v~~v~~~p~~~~~~~s~s~  271 (435)
T 4e54_B          201 --VFASS-----DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRM-HKKKVTHVALNPCCDWFLATASV  271 (435)
T ss_dssp             --EEECC-----SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBC-CSSCEEEEEECTTCSSEEEEEET
T ss_pred             --EEecc-----CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEec-ccceEEeeeecCCCceEEEEecC
Confidence              00000     0122347889999999999999999999999997 456667776 99999999999999779999999


Q ss_pred             CCcEEEEECCCCCceeE-EEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          615 DQDVKLWDLRQKPIQPC-YTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       615 DgtIrIWDlrs~~~~~~-~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                      |++|++||+++...... ....+|...+ +++|+|+|.+|++++.||.|++||++
T Consensus       272 d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~  326 (435)
T 4e54_B          272 DQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSAS  326 (435)
T ss_dssp             TSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESS
T ss_pred             cceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECC
Confidence            99999999998654332 2334566666 89999999999999999999999987

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.1e-27  Score=252.48  Aligned_cols=232  Identities=14%  Similarity=0.204  Sum_probs=181.5

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCC--eEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENE--NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP  532 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg--~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~  532 (721)
                      .|++++|+| +  +|++|+.||+|++||+.++  .....+...+|...|.+++|+ +++.+|++|+.|++|++||+....
T Consensus        16 ~v~~~~~s~-~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~s-p~~~~las~s~D~~v~iw~~~~~~   91 (330)
T 2hes_X           16 KIWSFDFSQ-G--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWR-PHTSLLAAGSFDSTVSIWAKEESA   91 (330)
T ss_dssp             CEEEEEEET-T--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEEC-TTSSEEEEEETTSCEEEEEC----
T ss_pred             ceeeeccCC-C--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEEC-CCCCEEEEEeCCCcEEEEEcccCc
Confidence            599999999 4  9999999999999999875  445555333499999999998 688999999999999999996532


Q ss_pred             CcccccccCcceeE-eccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC----CcEEEEEccccCCCeEEEEEcCCCCc
Q 004969          533 PSIRGMHYGAGTVT-FDEFDQLTSVHVNSMDELFLASGYSKNIALYDINS----GRRLQVFADMHKEHINVVKFSNHSPS  607 (721)
Q Consensus       533 ~~~~~~~~~~~~~~-~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s----~~~v~~l~~~h~~~V~sI~fsPdg~~  607 (721)
                      ....   ....... ..|...|.+++|+|++.++++++.|++|++||++.    .+.+..+.+ |...|.+++|+|++ .
T Consensus        92 ~~~~---~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~-h~~~v~~v~~~p~~-~  166 (330)
T 2hes_X           92 DRTF---EMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQE-HSQDVKHVIWHPSE-A  166 (330)
T ss_dssp             ---C---CCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECC-CSSCEEEEEECSSS-S
T ss_pred             Cccc---cceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEecc-CCCceEEEEECCCC-C
Confidence            1000   0011112 24667899999999999999999999999999953    256677776 99999999999998 7


Q ss_pred             EEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecC--CCEEEEEeCCCcEEEEEcCCC---------c---cc
Q 004969          608 IFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPD--DHYLLGKGSGTSMFVQSLRGD---------P---FR  672 (721)
Q Consensus       608 lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpd--g~~Lasgs~Dg~I~VWDl~g~---------~---l~  672 (721)
                      +|++|+.|++|++||.+++....+..+.+|...+ +++|+|+  +.+|++|+.|+.|++||+++.         .   +.
T Consensus       167 ~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~  246 (330)
T 2hes_X          167 LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILP  246 (330)
T ss_dssp             EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECC
T ss_pred             EEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecc
Confidence            9999999999999999876445567788888887 8999998  779999999999999998632         1   12


Q ss_pred             -ccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          673 -DFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       673 -~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                       .|...|.+++|+|.+        +|++|+..
T Consensus       247 ~~h~~~v~~v~~s~~~--------~l~s~~~d  270 (330)
T 2hes_X          247 DVHKRQVYNVAWGFNG--------LIASVGAD  270 (330)
T ss_dssp             SCCSSCEEEEEECTTS--------CEEEEETT
T ss_pred             cccccceEEEEEcCCC--------EEEEEeCC
Confidence             267789999999764        45666544

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.96  E-value=5.5e-27  Score=251.44  Aligned_cols=226  Identities=12%  Similarity=0.162  Sum_probs=183.1

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|++++|+| ++.++++|+.||+|++||+.+++.+..+.  +|...|.+++|+ +++++|++|+.||+|++||+..... 
T Consensus        78 ~V~~~~~~~-~~~~l~s~s~D~~v~lwd~~~~~~~~~~~--~h~~~v~~v~~s-p~~~~l~s~~~d~~i~~wd~~~~~~-  152 (343)
T 2xzm_R           78 FVSDLALSQ-ENCFAISSSWDKTLRLWDLRTGTTYKRFV--GHQSEVYSVAFS-PDNRQILSAGAEREIKLWNILGECK-  152 (343)
T ss_dssp             CEEEEEECS-STTEEEEEETTSEEEEEETTSSCEEEEEE--CCCSCEEEEEEC-SSTTEEEEEETTSCEEEEESSSCEE-
T ss_pred             ceEEEEECC-CCCEEEEEcCCCcEEEEECCCCcEEEEEc--CCCCcEEEEEEC-CCCCEEEEEcCCCEEEEEeccCCce-
Confidence            599999999 99999999999999999999999988887  899999999998 6889999999999999999974211 


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCC----------CEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCC
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMD----------ELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNH  604 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~----------~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPd  604 (721)
                      ... .     ....|...|.+++|+|.+          ..+++++.|+.|++|| .+++....+.+ |...|.+++|+|+
T Consensus       153 ~~~-~-----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~-h~~~v~~~~~s~~  224 (343)
T 2xzm_R          153 FSS-A-----EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKA-HESNVNHLSISPN  224 (343)
T ss_dssp             EEC-C-----TTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEEC-CSSCEEEEEECTT
T ss_pred             eee-e-----cccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcC-ccccceEEEECCC
Confidence            000 0     001355678999999886          7899999999999999 45677777876 9999999999999


Q ss_pred             CCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCC-cc-----c------
Q 004969          605 SPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGD-PF-----R------  672 (721)
Q Consensus       605 g~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~-~l-----~------  672 (721)
                      | .+|++|+.||+|++||++.... ....+.......+++|+|++.++++++ |+.|++|++... ..     .      
T Consensus       225 g-~~l~sgs~dg~v~iwd~~~~~~-~~~~~~~~~~v~~v~~sp~~~~la~~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~  301 (343)
T 2xzm_R          225 G-KYIATGGKDKKLLIWDILNLTY-PQREFDAGSTINQIAFNPKLQWVAVGT-DQGVKIFNLMTQSKAPVCTIEAEPITK  301 (343)
T ss_dssp             S-SEEEEEETTCEEEEEESSCCSS-CSEEEECSSCEEEEEECSSSCEEEEEE-SSCEEEEESSSCCSCSEEECCCCSGGG
T ss_pred             C-CEEEEEcCCCeEEEEECCCCcc-cceeecCCCcEEEEEECCCCCEEEEEC-CCCEEEEEeCCCCCCceEEeecCcchh
Confidence            9 8999999999999999954322 122332333444999999999887654 888999998632 11     1      


Q ss_pred             -----ccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          673 -----DFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       673 -----~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                           .|...+.+++|+|++       ..|++|+..
T Consensus       302 ~~~~~~~~~~v~~~~~sp~g-------~~l~sg~~D  330 (343)
T 2xzm_R          302 AEGQKGKNPQCTSLAWNALG-------KKLFAGFTD  330 (343)
T ss_dssp             BTTBCCSCCCEEEEEECSSS-------CCEEEEETT
T ss_pred             hhhhcCCCCceEEEEECCCC-------CeEEEecCC
Confidence                 455679999999999       889998876

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.96  E-value=6.6e-28  Score=261.20  Aligned_cols=234  Identities=16%  Similarity=0.237  Sum_probs=184.3

Q ss_pred             CeEEEEEeCCCCCEEEEEEC------CCeEEEEECCCCeEEEEe--ecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEE
Q 004969          455 RPRQFEYHPSISCLMVFGTL------DGEIVVVNHENENIVSYI--PSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLY  526 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~------DG~I~IWdl~tg~~i~~l--~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIW  526 (721)
                      .|++++|+| ||.+||+|+.      ||.|++|+..++.....+  ...+|...|++++|+ +++ .+++++.||+|++|
T Consensus        44 ~V~~v~fSp-DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s-~d~-~~l~~s~dg~v~lW  120 (357)
T 4g56_B           44 QIGAVRYRR-DGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWV-SEK-GILVASDSGAVELW  120 (357)
T ss_dssp             EEEEEEECS-SSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEE-TTT-EEEEEETTSCEEEC
T ss_pred             CEEEEEECC-CCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEc-CCC-CEEEEECCCEEEEe
Confidence            699999999 9999999997      788999998876543221  112688899999998 454 56788999999999


Q ss_pred             EcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCC
Q 004969          527 DIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSP  606 (721)
Q Consensus       527 Di~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~  606 (721)
                      |+.+++....     .......|...|.+++|+|++..+++++.|++|++||+++++.+..+.+ |...|++++|+|++.
T Consensus       121 d~~~~~~~~~-----~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~-h~~~v~~v~~s~~~~  194 (357)
T 4g56_B          121 EILEKESLLV-----NKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNA-HSSEVNCVAACPGKD  194 (357)
T ss_dssp             --------CC-----CCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTCS
T ss_pred             eccccceeEE-----EeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC-CCCCEEEEEEccCCC
Confidence            9988654211     1122335678899999999999999999999999999999999999997 999999999999986


Q ss_pred             cEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecC-CCEEEEEeCCCcEEEEEcCC-C---cccccccCeEE
Q 004969          607 SIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPD-DHYLLGKGSGTSMFVQSLRG-D---PFRDFNMSILA  680 (721)
Q Consensus       607 ~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpd-g~~Lasgs~Dg~I~VWDl~g-~---~l~~~~~~V~~  680 (721)
                      .++++++.||+|++||+++++.........+...+ +++|+|+ +.+|++|+.|+.|++||++. +   .+..|...|.+
T Consensus       195 ~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~  274 (357)
T 4g56_B          195 TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITG  274 (357)
T ss_dssp             SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEE
T ss_pred             ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEE
Confidence            78999999999999999998765555555555555 8999997 56889999999999999983 2   24556789999


Q ss_pred             EEECCCCCcccccccEEEEecCC
Q 004969          681 AYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       681 v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      ++|+|++.      .+||+|+..
T Consensus       275 l~~sp~~~------~~lasgs~D  291 (357)
T 4g56_B          275 LAYSYHSS------PFLASISED  291 (357)
T ss_dssp             EEECSSSS------CCEEEEETT
T ss_pred             EEEcCCCC------CEEEEEeCC
Confidence            99999873      578888765

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.9e-27  Score=252.76  Aligned_cols=230  Identities=15%  Similarity=0.200  Sum_probs=177.9

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCC-------CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEE
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHEN-------ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYD  527 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~t-------g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWD  527 (721)
                      .|++++|+| ++++|++|+.||+|+|||+..       .+.+..+.  +|...|.+++|+ +++++|++|+.||+|++||
T Consensus        60 ~v~~v~~sp-~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~--~h~~~V~~v~~s-p~g~~las~s~D~~v~iwd  135 (330)
T 2hes_X           60 AIRSVAWRP-HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIE--GHENEVKGVAWS-NDGYYLATCSRDKSVWIWE  135 (330)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC------CEEEEEEC-TTSCEEEEEETTSCEEEEE
T ss_pred             CEEEEEECC-CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEc--CCCCcEEEEEEC-CCCCEEEEEeCCCEEEEEe
Confidence            599999999 899999999999999999853       34555555  899999999998 6899999999999999999


Q ss_pred             cCCCCCcccccccCcceeE-eccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC--cEEEEEccccCCCeEEEEEcCC
Q 004969          528 IRHMPPSIRGMHYGAGTVT-FDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSG--RRLQVFADMHKEHINVVKFSNH  604 (721)
Q Consensus       528 i~~~~~~~~~~~~~~~~~~-~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~--~~v~~l~~~h~~~V~sI~fsPd  604 (721)
                      +.......      ..... ..|...|.+++|+|++..+++++.|++|++||..++  +++..+.+ |...|.+++|+|+
T Consensus       136 ~~~~~~~~------~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~-h~~~v~~~~~~~~  208 (330)
T 2hes_X          136 TDESGEEY------ECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNG-HEGTVWSSDFDKT  208 (330)
T ss_dssp             CCTTCCCC------EEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECCS
T ss_pred             ccCCCCCe------EEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccC-CCCcEEEEEecCC
Confidence            95432110      11112 235678999999999999999999999999999876  67788887 9999999999998


Q ss_pred             C-CcEEEEEECCCcEEEEECCCCCc------eeEEEecC-CCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCc-----
Q 004969          605 S-PSIFATSSFDQDVKLWDLRQKPI------QPCYTASS-SKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDP-----  670 (721)
Q Consensus       605 g-~~lLaSgs~DgtIrIWDlrs~~~------~~~~~~~~-~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~-----  670 (721)
                      + ...+++|+.|++|++||++.+..      .....+.. |...+ +++|++++ +|++++.||.|++|+.....     
T Consensus       209 ~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~  287 (330)
T 2hes_X          209 EGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFA  287 (330)
T ss_dssp             SSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEE
T ss_pred             CCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEe
Confidence            3 26899999999999999875421      22333443 66666 89999765 88999999999999987431     


Q ss_pred             --cccccc-CeEEEEECC--CCCcccccccEEEEecCC
Q 004969          671 --FRDFNM-SILAAYTRP--SSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       671 --l~~~~~-~V~~v~fsP--~~~~~~v~v~lLASgs~~  703 (721)
                        ...|.. .|.+++|+|  ++       .+||+|+..
T Consensus       288 ~~~~~h~~~~v~~v~~~~~~~~-------~~las~s~D  318 (330)
T 2hes_X          288 KRALCHGVYEINVVKWLELNGK-------TILATGGDD  318 (330)
T ss_dssp             EESCTTTTSCEEEEEEC------------CCEEEEETT
T ss_pred             ccccccccceEEEEEEecCCCc-------eEEEEecCC
Confidence              234555 899999999  57       789999876

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.96  E-value=1.3e-26  Score=248.46  Aligned_cols=225  Identities=19%  Similarity=0.250  Sum_probs=181.9

Q ss_pred             CeEEEEE-----eCCCCCEEEEEECCCeEEEEECCCC-------eEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCe
Q 004969          455 RPRQFEY-----HPSISCLMVFGTLDGEIVVVNHENE-------NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGS  522 (721)
Q Consensus       455 ~V~~laf-----sP~dg~~LasGs~DG~I~IWdl~tg-------~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGt  522 (721)
                      .|++++|     +|.++.+|++|+.||+|++||+.++       .....+.  +|...|.+++|+ +++.++++|+.||+
T Consensus        23 ~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~--~h~~~V~~~~~~-~~~~~l~s~s~D~~   99 (343)
T 2xzm_R           23 WVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALT--GHNHFVSDLALS-QENCFAISSSWDKT   99 (343)
T ss_dssp             CEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEEC--CCSSCEEEEEEC-SSTTEEEEEETTSE
T ss_pred             hhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhc--cCCCceEEEEEC-CCCCEEEEEcCCCc
Confidence            5999999     6658899999999999999998753       3445555  899999999998 68899999999999


Q ss_pred             EEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEc--cccCCCeEEEE
Q 004969          523 LKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFA--DMHKEHINVVK  600 (721)
Q Consensus       523 VrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~--~~h~~~V~sI~  600 (721)
                      |++||+++++..         .....|...|.+++|+|++..+++++.|++|++||+... ......  ..|...|.+++
T Consensus       100 v~lwd~~~~~~~---------~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~  169 (343)
T 2xzm_R          100 LRLWDLRTGTTY---------KRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVR  169 (343)
T ss_dssp             EEEEETTSSCEE---------EEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEE
T ss_pred             EEEEECCCCcEE---------EEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeee
Confidence            999999986531         112246678999999999999999999999999999843 333333  13889999999


Q ss_pred             EcCCCC---------cEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC--C
Q 004969          601 FSNHSP---------SIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR--G  668 (721)
Q Consensus       601 fsPdg~---------~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~--g  668 (721)
                      |+|++.         .++++++.|++|++||...   .....+.+|...+ +++|+|+|++|++|+.||.|++||+.  +
T Consensus       170 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~  246 (343)
T 2xzm_R          170 YSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF---QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLT  246 (343)
T ss_dssp             ECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT---EEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCS
T ss_pred             eccccccccccCCCCCEEEEEcCCCEEEEEcCCC---ceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence            999862         5899999999999999543   3355666777777 89999999999999999999999994  2


Q ss_pred             Ccccc--cccCeEEEEECCCCCcccccccEEEEecC
Q 004969          669 DPFRD--FNMSILAAYTRPSSKSEIVKVNLLASTDH  702 (721)
Q Consensus       669 ~~l~~--~~~~V~~v~fsP~~~~~~v~v~lLASgs~  702 (721)
                      .+...  +...|.+++|+|++       .++++|+.
T Consensus       247 ~~~~~~~~~~~v~~v~~sp~~-------~~la~~~d  275 (343)
T 2xzm_R          247 YPQREFDAGSTINQIAFNPKL-------QWVAVGTD  275 (343)
T ss_dssp             SCSEEEECSSCEEEEEECSSS-------CEEEEEES
T ss_pred             ccceeecCCCcEEEEEECCCC-------CEEEEECC
Confidence            22222  34579999999998       77776643

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.96  E-value=2.8e-27  Score=247.61  Aligned_cols=238  Identities=14%  Similarity=0.164  Sum_probs=194.9

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCC----eEEEEeecCCCCCCeEEEEEeeC-CCCEEEEEeCCCeEEEEEcC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENE----NIVSYIPSFGAMNSVLGLCWLKK-YPSKLIAGSDNGSLKLYDIR  529 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg----~~i~~l~~~~H~~~V~sl~fsp~-d~~~LaSgs~DGtVrIWDi~  529 (721)
                      .|++++|+| ++.+|++|+.||.|++||+.++    +....+.  +|...|++++|+|. ++.+|++|+.||+|++||+.
T Consensus        13 ~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~   89 (351)
T 3f3f_A           13 LVHDVVYDF-YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWR--AHDSSIVAIDWASPEYGRIIASASYDKTVKLWEED   89 (351)
T ss_dssp             CEEEEEECS-SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEE--CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEC
T ss_pred             ceeEEEEcC-CCCEEEEeeCCCeEEEEECCCCCCcceecceec--cCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecC
Confidence            599999999 9999999999999999999876    3555555  89999999999954 58999999999999999998


Q ss_pred             CCCCcccccccCcceeE-eccCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCCcEEEEEc------------cccCC
Q 004969          530 HMPPSIRGMHYGAGTVT-FDEFDQLTSVHVNSM--DELFLASGYSKNIALYDINSGRRLQVFA------------DMHKE  594 (721)
Q Consensus       530 ~~~~~~~~~~~~~~~~~-~~~~~~V~sv~~sp~--~~~lls~g~Dg~IrlWDl~s~~~v~~l~------------~~h~~  594 (721)
                      ++......... ..... ..|...|.+++|+|+  +..+++++.||.|++||+++++.+..+.            ..|..
T Consensus        90 ~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (351)
T 3f3f_A           90 PDQEECSGRRW-NKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQ  168 (351)
T ss_dssp             TTSCTTSSCSE-EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSC
T ss_pred             CCcccccccCc-ceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCccc
Confidence            86532111000 11222 246678999999999  9999999999999999999876543322            13788


Q ss_pred             CeEEEEEcCC--CCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCC----CEEEEEeCCCcEEEEEcC
Q 004969          595 HINVVKFSNH--SPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDD----HYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       595 ~V~sI~fsPd--g~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg----~~Lasgs~Dg~I~VWDl~  667 (721)
                      .+.+++|+|+  .+..+++++.|+.+.+|+...+.......+.+|...+ +++|+|++    .+|++|+.||.|++||++
T Consensus       169 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~  248 (351)
T 3f3f_A          169 SDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKIT  248 (351)
T ss_dssp             CCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEE
T ss_pred             ceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCC
Confidence            9999999997  2379999999999999998888766677888888877 99999998    899999999999999987


Q ss_pred             CC-----------------------------------------------c---ccccccCeEEEEECCCCCcccccccEE
Q 004969          668 GD-----------------------------------------------P---FRDFNMSILAAYTRPSSKSEIVKVNLL  697 (721)
Q Consensus       668 g~-----------------------------------------------~---l~~~~~~V~~v~fsP~~~~~~v~v~lL  697 (721)
                      ..                                               .   +..|...|.+++|+|++       .+|
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-------~~l  321 (351)
T 3f3f_A          249 EKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTG-------TIL  321 (351)
T ss_dssp             ECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSS-------CCE
T ss_pred             CCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCC-------CEE
Confidence            31                                               1   33466789999999999       899


Q ss_pred             EEecCC
Q 004969          698 ASTDHC  703 (721)
Q Consensus       698 ASgs~~  703 (721)
                      ++|+..
T Consensus       322 ~s~~~d  327 (351)
T 3f3f_A          322 SSAGDD  327 (351)
T ss_dssp             EEEETT
T ss_pred             EEecCC
Confidence            999876

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.96  E-value=3e-26  Score=241.68  Aligned_cols=234  Identities=17%  Similarity=0.226  Sum_probs=186.3

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe-----EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN-----IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIR  529 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~-----~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~  529 (721)
                      .|++|+|+|+++++|+||+.||+|+|||+.+++     ....+.  +|...|.+++|+ +++.+|++|+.||.|++|+..
T Consensus        40 ~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~--~h~~~V~~~~~s-~dg~~l~s~~~d~~i~~~~~~  116 (340)
T 4aow_A           40 WVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR--GHSHFVSDVVIS-SDGQFALSGSWDGTLRLWDLT  116 (340)
T ss_dssp             CEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEEC--CCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETT
T ss_pred             CEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEe--CCCCCEEEEEEC-CCCCEEEEEcccccceEEeec
Confidence            599999999668999999999999999987653     344554  899999999998 789999999999999999998


Q ss_pred             CCCCcccccc-----------------------c--------Cccee---EeccCCCeEEEEEecCC--CEEEEEeCCCc
Q 004969          530 HMPPSIRGMH-----------------------Y--------GAGTV---TFDEFDQLTSVHVNSMD--ELFLASGYSKN  573 (721)
Q Consensus       530 ~~~~~~~~~~-----------------------~--------~~~~~---~~~~~~~V~sv~~sp~~--~~lls~g~Dg~  573 (721)
                      ..........                       +        .....   ...+...+..++|++++  ..+++++.|+.
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~  196 (340)
T 4aow_A          117 TGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKL  196 (340)
T ss_dssp             TTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSC
T ss_pred             ccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCE
Confidence            6432110000                       0        00000   11244668889987764  56788889999


Q ss_pred             EEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEE
Q 004969          574 IALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLL  653 (721)
Q Consensus       574 IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~La  653 (721)
                      |++||+++++.+..+.+ |...|++++|+|++ .+|++|+.||+|++||+++.+.  +..+.++....+++|+|++.+++
T Consensus       197 i~i~d~~~~~~~~~~~~-h~~~v~~~~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~  272 (340)
T 4aow_A          197 VKVWNLANCKLKTNHIG-HTGYLNTVTVSPDG-SLCASGGKDGQAMLWDLNEGKH--LYTLDGGDIINALCFSPNRYWLC  272 (340)
T ss_dssp             EEEEETTTTEEEEEECC-CSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEE--EEEEECSSCEEEEEECSSSSEEE
T ss_pred             EEEEECCCCceeeEecC-CCCcEEEEEECCCC-CEEEEEeCCCeEEEEEeccCce--eeeecCCceEEeeecCCCCceee
Confidence            99999999999999987 99999999999999 7999999999999999998744  55556666666899999887665


Q ss_pred             EEeCCCcEEEEEcCCCc-------------ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          654 GKGSGTSMFVQSLRGDP-------------FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       654 sgs~Dg~I~VWDl~g~~-------------l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                       ++.|+.|++||+++..             ...|...|.+++|+|++       ..|++|+..
T Consensus       273 -~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-------~~l~sgs~D  327 (340)
T 4aow_A          273 -AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADG-------QTLFAGYTD  327 (340)
T ss_dssp             -EEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTS-------SEEEEEETT
T ss_pred             -ccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCC-------CEEEEEeCC
Confidence             5569999999997432             23456789999999999       899999876

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.96  E-value=1.9e-28  Score=263.86  Aligned_cols=230  Identities=12%  Similarity=0.125  Sum_probs=182.4

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCC--eEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENE--NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP  532 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg--~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~  532 (721)
                      .|++++|+| ++++|++|+.||.|+|||+.++  +.+..+.  +|...|++++|+ +++++|++|+.||+|++||+.++.
T Consensus        13 ~v~~~~~s~-~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~--~h~~~v~~~~~s-~~~~~l~s~s~d~~v~vwd~~~~~   88 (377)
T 3dwl_C           13 PSYEHAFNS-QRTEFVTTTATNQVELYEQDGNGWKHARTFS--DHDKIVTCVDWA-PKSNRIVTCSQDRNAYVYEKRPDG   88 (377)
T ss_dssp             CCSCCEECS-SSSEEECCCSSSCBCEEEEETTEEEECCCBC--CCSSCEEEEEEC-TTTCCEEEEETTSSEEEC------
T ss_pred             cEEEEEECC-CCCEEEEecCCCEEEEEEccCCceEEEEEEe--cCCceEEEEEEe-CCCCEEEEEeCCCeEEEEEcCCCC
Confidence            489999999 9999999999999999999988  4555554  899999999998 678999999999999999999865


Q ss_pred             CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc---EEEEEccccCCCeEEEEEcCCCCcEE
Q 004969          533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR---RLQVFADMHKEHINVVKFSNHSPSIF  609 (721)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~---~v~~l~~~h~~~V~sI~fsPdg~~lL  609 (721)
                      ..      ........|...|.+++|+|++..+++++.|+.|++||+++++   ....+.+.|...|.+++|+|++ .++
T Consensus        89 ~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l  161 (377)
T 3dwl_C           89 TW------KQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNN-VLL  161 (377)
T ss_dssp             CC------CCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTS-SEE
T ss_pred             ce------eeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCC-CEE
Confidence            10      0112223466789999999999999999999999999999887   3677775599999999999998 899


Q ss_pred             EEEECCCcEEEEECCCCC----------------ceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCC-c-
Q 004969          610 ATSSFDQDVKLWDLRQKP----------------IQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGD-P-  670 (721)
Q Consensus       610 aSgs~DgtIrIWDlrs~~----------------~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~-~-  670 (721)
                      ++|+.|++|++||++...                ......+ +|...+ +++|+|+|++|++++.||.|++||++.. . 
T Consensus       162 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~  240 (377)
T 3dwl_C          162 AAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQP  240 (377)
T ss_dssp             EEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSC
T ss_pred             EEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCc
Confidence            999999999999986321                1233444 666666 8999999999999999999999999832 2 


Q ss_pred             ------ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          671 ------FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       671 ------l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                            +..|...|.+++|+|++       .+|++|+..
T Consensus       241 ~~~~~~~~~~~~~v~~~~~s~~~-------~~l~~~~~~  272 (377)
T 3dwl_C          241 PRALITVKLSQLPLRSLLWANES-------AIVAAGYNY  272 (377)
T ss_dssp             EEECCCEECSSSCEEEEEEEETT-------EEEEEESSS
T ss_pred             ceeeEeecCCCCceEEEEEcCCC-------CEEEEEcCC
Confidence                  34566789999999999       888888754

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.96  E-value=8.5e-27  Score=255.17  Aligned_cols=227  Identities=13%  Similarity=0.214  Sum_probs=187.6

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecC----------------CCCCCeEEEEEeeCCCCEEEEEe
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSF----------------GAMNSVLGLCWLKKYPSKLIAGS  518 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~----------------~H~~~V~sl~fsp~d~~~LaSgs  518 (721)
                      .|.+++|+| ++++||+|+ +++++||++.+|+.+..+...                .+...|.+++|+ +++++|++|+
T Consensus        66 ~V~~v~fsp-dg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~dg~~l~s~~  142 (393)
T 1erj_A           66 VVCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS-PDGKFLATGA  142 (393)
T ss_dssp             CCCEEEECT-TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEEC-TTSSEEEEEE
T ss_pred             EEEEEEECC-CCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEEC-CCCCEEEEEc
Confidence            589999999 999999987 789999999999988777531                122349999998 7899999999


Q ss_pred             CCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEE
Q 004969          519 DNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINV  598 (721)
Q Consensus       519 ~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~s  598 (721)
                      .||+|++||+.+++..         .....|...|.+++|+|++..+++++.|++|++||+++++....+.  +...+.+
T Consensus       143 ~d~~i~iwd~~~~~~~---------~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~--~~~~v~~  211 (393)
T 1erj_A          143 EDRLIRIWDIENRKIV---------MILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS--IEDGVTT  211 (393)
T ss_dssp             TTSCEEEEETTTTEEE---------EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEE
T ss_pred             CCCeEEEEECCCCcEE---------EEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE--cCCCcEE
Confidence            9999999999875431         1122356789999999999999999999999999999999888887  6788999


Q ss_pred             EEEcC-CCCcEEEEEECCCcEEEEECCCCCceeEEE-----ecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCC--
Q 004969          599 VKFSN-HSPSIFATSSFDQDVKLWDLRQKPIQPCYT-----ASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGD--  669 (721)
Q Consensus       599 I~fsP-dg~~lLaSgs~DgtIrIWDlrs~~~~~~~~-----~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~--  669 (721)
                      ++|+| ++ .++++|+.|++|++||++++.......     ..+|...+ +++|+|+|++|++|+.|+.|++||++..  
T Consensus       212 ~~~~~~~~-~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~  290 (393)
T 1erj_A          212 VAVSPGDG-KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN  290 (393)
T ss_dssp             EEECSTTC-CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----
T ss_pred             EEEECCCC-CEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCC
Confidence            99999 56 899999999999999999876433221     14566666 8999999999999999999999998631  


Q ss_pred             --------------cccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          670 --------------PFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       670 --------------~l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                                    .+.+|...|.+++|+|++       ..|++|+..
T Consensus       291 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-------~~l~sgs~D  331 (393)
T 1erj_A          291 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQND-------EYILSGSKD  331 (393)
T ss_dssp             ----------CEEEEEECCSSCEEEEEECGGG-------CEEEEEETT
T ss_pred             cccccCCCCCcceEEEecccCcEEEEEECCCC-------CEEEEEeCC
Confidence                          234567789999999999       888888876

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.96  E-value=3.2e-27  Score=255.84  Aligned_cols=199  Identities=19%  Similarity=0.183  Sum_probs=172.0

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|++++|+| ++++|++|+.||+|++||+.+++.+..+.  +|...|++++|+|....++++++.||+|++||+++++..
T Consensus       141 ~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~--~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~  217 (357)
T 4g56_B          141 IVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYN--AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPA  217 (357)
T ss_dssp             CEEEEEECS-SSSEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCB
T ss_pred             CEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEc--CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCcee
Confidence            599999999 99999999999999999999999998887  899999999998555568999999999999999986652


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDE-LFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS  613 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~-~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs  613 (721)
                      ...       ....+...+.+++|+|+++ .+++++.|+.|++||+++++.+..+.+ |...|++++|+|++..+|++|+
T Consensus       218 ~~~-------~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~~lasgs  289 (357)
T 4g56_B          218 TRI-------DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAV-HSQNITGLAYSYHSSPFLASIS  289 (357)
T ss_dssp             CBC-------CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECC-CSSCEEEEEECSSSSCCEEEEE
T ss_pred             eee-------eeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEec-cceeEEEEEEcCCCCCEEEEEe
Confidence            111       1112345689999999854 677788999999999999999999987 9999999999999867899999


Q ss_pred             CCCcEEEEECCCCCceeEEEecCCCCeE-EEEEec-CCCEEEEEeCCCcEEEEEcC
Q 004969          614 FDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSP-DDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       614 ~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSp-dg~~Lasgs~Dg~I~VWDl~  667 (721)
                      .|++|+|||+++++.  . ...+|...+ +++|+| ++.+|++++.||.|++|++.
T Consensus       290 ~D~~i~iwd~~~~~~--~-~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~  342 (357)
T 4g56_B          290 EDCTVAVLDADFSEV--F-RDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLP  342 (357)
T ss_dssp             TTSCEEEECTTSCEE--E-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred             CCCEEEEEECCCCcE--e-EECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECC
Confidence            999999999998753  3 334677777 899999 89999999999999999997

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.96  E-value=1e-26  Score=269.75  Aligned_cols=235  Identities=12%  Similarity=0.157  Sum_probs=188.9

Q ss_pred             CeEEEEEeCCCC-CEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969          455 RPRQFEYHPSIS-CLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       455 ~V~~lafsP~dg-~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~  533 (721)
                      .|++++|+| ++ .++++|+.|++|++||..+++....+.  +|...|++++|+ +++.+|++|+.||+|++||+.+++.
T Consensus       149 ~v~~v~f~p-~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~--~H~~~V~~v~fs-pdg~~las~s~D~~i~lwd~~~g~~  224 (611)
T 1nr0_A          149 AMNSVDFKP-SRPFRIISGSDDNTVAIFEGPPFKFKSTFG--EHTKFVHSVRYN-PDGSLFASTGGDGTIVLYNGVDGTK  224 (611)
T ss_dssp             CEEEEEECS-SSSCEEEEEETTSCEEEEETTTBEEEEEEC--CCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCE
T ss_pred             CceEEEECC-CCCeEEEEEeCCCeEEEEECCCCeEeeeec--cccCceEEEEEC-CCCCEEEEEECCCcEEEEECCCCcE
Confidence            699999999 55 479999999999999999988888887  899999999998 6899999999999999999987654


Q ss_pred             cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEc------------------------
Q 004969          534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFA------------------------  589 (721)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~------------------------  589 (721)
                      ... +.. .......|...|.+++|+|++..+++++.|++|++||+++++.+..+.                        
T Consensus       225 ~~~-~~~-~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~  302 (611)
T 1nr0_A          225 TGV-FED-DSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISA  302 (611)
T ss_dssp             EEE-CBC-TTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEET
T ss_pred             eee-ecc-ccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeC
Confidence            211 100 000112467889999999999999999999999999999877654331                        


Q ss_pred             ------------------cccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEE-------------------
Q 004969          590 ------------------DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCY-------------------  632 (721)
Q Consensus       590 ------------------~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~-------------------  632 (721)
                                        .+|...|.+++|+|+| .++++++.|++|++||+.++......                   
T Consensus       303 d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg-~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l  381 (611)
T 1nr0_A          303 NGFINFVNPELGSIDQVRYGHNKAITALSSSADG-KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL  381 (611)
T ss_dssp             TCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE
T ss_pred             CCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcE
Confidence                              1388999999999999 89999999999999999875321110                   


Q ss_pred             --------------------------------------------------------------EecCCCCeEEEEEecCCC
Q 004969          633 --------------------------------------------------------------TASSSKGNVMVCFSPDDH  650 (721)
Q Consensus       633 --------------------------------------------------------------~~~~~~~~vsl~fSpdg~  650 (721)
                                                                                    .+.......+++|+|||+
T Consensus       382 ~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~  461 (611)
T 1nr0_A          382 FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQ  461 (611)
T ss_dssp             EEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSC
T ss_pred             EEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCC
Confidence                                                                          000001123789999999


Q ss_pred             EEEEEeCCCcEEEEEcCCCcc-----cccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          651 YLLGKGSGTSMFVQSLRGDPF-----RDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       651 ~Lasgs~Dg~I~VWDl~g~~l-----~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      +|++|+.|+.|++||+.+..+     ..|...|.+++|+|++       .+||+++..
T Consensus       462 ~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg-------~~las~s~d  512 (611)
T 1nr0_A          462 FVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNG-------AFLVATDQS  512 (611)
T ss_dssp             EEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTS-------SEEEEEETT
T ss_pred             EEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCC-------CEEEEEcCC
Confidence            999999999999999975432     3567889999999999       899998875

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=5.8e-27  Score=250.13  Aligned_cols=230  Identities=16%  Similarity=0.176  Sum_probs=189.1

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECC--CCeEEEEeecCCCCCCeEEEEEeeC-CCCEEEEEeCCCeEEEEEcCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHE--NENIVSYIPSFGAMNSVLGLCWLKK-YPSKLIAGSDNGSLKLYDIRHM  531 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~--tg~~i~~l~~~~H~~~V~sl~fsp~-d~~~LaSgs~DGtVrIWDi~~~  531 (721)
                      .|++++|+| ++++|++|+.||.|+|||+.  +++.+..+.  +|...|++++|+++ ++.+|++|+.||.|++||+.++
T Consensus        13 ~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~   89 (379)
T 3jrp_A           13 LIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLT--GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG   89 (379)
T ss_dssp             CEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEEC--CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETT
T ss_pred             cEEEEEEcC-CCCEEEEEECCCcEEEEecCCCcceeeeEec--CCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCC
Confidence            599999999 99999999999999999998  445555555  89999999999743 2899999999999999999885


Q ss_pred             CCcccccccCcceeEeccCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCCc--EEEEEccccCCCeEEEEEcC----
Q 004969          532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSM--DELFLASGYSKNIALYDINSGR--RLQVFADMHKEHINVVKFSN----  603 (721)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~--~~~lls~g~Dg~IrlWDl~s~~--~v~~l~~~h~~~V~sI~fsP----  603 (721)
                      +..       .......|...|.+++|+|+  +..+++++.|+.|++||++++.  ....+.. |...|.+++|+|    
T Consensus        90 ~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~  161 (379)
T 3jrp_A           90 RWS-------QIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA-HAIGVNSASWAPATIE  161 (379)
T ss_dssp             EEE-------EEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEEC-CTTCEEEEEECCCC--
T ss_pred             cee-------EeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecC-CCCceEEEEEcCcccc
Confidence            421       01112235678999999999  8999999999999999999873  3445555 999999999999    


Q ss_pred             ---------CCCcEEEEEECCCcEEEEECCCCCce--eEEEecCCCCeE-EEEEecC---CCEEEEEeCCCcEEEEEcCC
Q 004969          604 ---------HSPSIFATSSFDQDVKLWDLRQKPIQ--PCYTASSSKGNV-MVCFSPD---DHYLLGKGSGTSMFVQSLRG  668 (721)
Q Consensus       604 ---------dg~~lLaSgs~DgtIrIWDlrs~~~~--~~~~~~~~~~~v-sl~fSpd---g~~Lasgs~Dg~I~VWDl~g  668 (721)
                               ++ .++++|+.||.|++||++++...  ....+.+|...+ +++|+|+   +.+|++++.||.|++||++.
T Consensus       162 ~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~  240 (379)
T 3jrp_A          162 EDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN  240 (379)
T ss_dssp             --------CTT-CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             ccccccCCCCC-CEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence                     46 79999999999999999876532  345667777777 8999999   89999999999999999984


Q ss_pred             C------c---ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          669 D------P---FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       669 ~------~---l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      .      .   ...+...|.+++|+|++       ..|++++..
T Consensus       241 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g-------~~l~~~~~d  277 (379)
T 3jrp_A          241 EQGPWKKTLLKEEKFPDVLWRASWSLSG-------NVLALSGGD  277 (379)
T ss_dssp             TTSCCEEEESSSSCCSSCEEEEEECSSS-------CCEEEEESS
T ss_pred             CCccceeeeeccccCCCcEEEEEEcCCC-------CEEEEecCC
Confidence            2      1   12256789999999999       777777765

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.95  E-value=9.5e-26  Score=239.41  Aligned_cols=234  Identities=15%  Similarity=0.141  Sum_probs=195.0

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|++++|+| +++++++|+.||.|++||+.+++.+..+.  +|...|.+++|+ +++++|++++.||+|++||+.+++..
T Consensus        34 ~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~  109 (369)
T 3zwl_B           34 PLTQVKYNK-EGDLLFSCSKDSSASVWYSLNGERLGTLD--GHTGTIWSIDVD-CFTKYCVTGSADYSIKLWDVSNGQCV  109 (369)
T ss_dssp             CEEEEEECT-TSCEEEEEESSSCEEEEETTTCCEEEEEC--CCSSCEEEEEEC-TTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred             eEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCchhhhhhh--hcCCcEEEEEEc-CCCCEEEEEeCCCeEEEEECCCCcEE
Confidence            599999999 99999999999999999999999998887  899999999998 68899999999999999999876542


Q ss_pred             cccccc-----------Cc-------------cee------------------------EeccCC--CeEEEEEecCCCE
Q 004969          535 IRGMHY-----------GA-------------GTV------------------------TFDEFD--QLTSVHVNSMDEL  564 (721)
Q Consensus       535 ~~~~~~-----------~~-------------~~~------------------------~~~~~~--~V~sv~~sp~~~~  564 (721)
                      ......           ..             +.+                        ...+..  .+.+++|+|++..
T Consensus       110 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (369)
T 3zwl_B          110 ATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKY  189 (369)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCE
T ss_pred             EEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCE
Confidence            111000           00             000                        001111  7899999999999


Q ss_pred             EEEEeCCCcEEEEECCC-CcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEE
Q 004969          565 FLASGYSKNIALYDINS-GRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMV  643 (721)
Q Consensus       565 lls~g~Dg~IrlWDl~s-~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl  643 (721)
                      +++++.||.|++||+++ ++.+..+.. |...|.+++|+|++ .++++++.|+.|++||+++++...  .+........+
T Consensus       190 l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~~~~  265 (369)
T 3zwl_B          190 IIAGHKDGKISKYDVSNNYEYVDSIDL-HEKSISDMQFSPDL-TYFITSSRDTNSFLVDVSTLQVLK--KYETDCPLNTA  265 (369)
T ss_dssp             EEEEETTSEEEEEETTTTTEEEEEEEC-CSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEE--EEECSSCEEEE
T ss_pred             EEEEcCCCEEEEEECCCCcEeEEEEec-CCCceeEEEECCCC-CEEEEecCCceEEEEECCCCceee--eecCCCCceeE
Confidence            99999999999999998 788888886 99999999999999 799999999999999999986543  34444455589


Q ss_pred             EEecCCCEEEEEeCCC--------------cEEEEEcC-CCc---ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          644 CFSPDDHYLLGKGSGT--------------SMFVQSLR-GDP---FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       644 ~fSpdg~~Lasgs~Dg--------------~I~VWDl~-g~~---l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      +|+|+++++++++.++              .+++||+. +..   +..|...|.+++|+|++       .+|++|+..
T Consensus       266 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~-------~~l~s~~~d  336 (369)
T 3zwl_B          266 VITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQG-------TSYASGGED  336 (369)
T ss_dssp             EECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-------SEEEEEETT
T ss_pred             EecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCC-------CEEEEEcCC
Confidence            9999999999999888              89999987 333   45567899999999999       899999876

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.95  E-value=9.1e-27  Score=270.17  Aligned_cols=223  Identities=15%  Similarity=0.236  Sum_probs=186.7

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe--EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC----CeEEEEEc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN--IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN----GSLKLYDI  528 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~--~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D----GtVrIWDi  528 (721)
                      .|++++|+| ++++||+|+.||+|+|||+.+++  ....+.  +|.++|.+++|+ +++..|++++.+    +.|++||.
T Consensus        61 ~v~~~~~sp-dg~~lasg~~d~~v~lWd~~~~~~~~~~~~~--~~~~~v~~v~fs-~dg~~l~~~~~~~~~~~~v~~wd~  136 (611)
T 1nr0_A           61 QTTVAKTSP-SGYYCASGDVHGNVRIWDTTQTTHILKTTIP--VFSGPVKDISWD-SESKRIAAVGEGRERFGHVFLFDT  136 (611)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSEEEEEESSSTTCCEEEEEE--CSSSCEEEEEEC-TTSCEEEEEECCSSCSEEEEETTT
T ss_pred             ceEEEEECC-CCcEEEEEeCCCCEEEeECCCCcceeeEeec--ccCCceEEEEEC-CCCCEEEEEECCCCceeEEEEeeC
Confidence            599999999 99999999999999999997554  344454  899999999998 688999988865    57888885


Q ss_pred             CCCCCcccccccCcceeEeccCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCc
Q 004969          529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDE-LFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPS  607 (721)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~-~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~  607 (721)
                      ..  . ...+        ..|...|.+++|+|++. .+++++.|++|++||..+++....+.+ |...|.+++|+|+| .
T Consensus       137 ~~--~-~~~l--------~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~-H~~~V~~v~fspdg-~  203 (611)
T 1nr0_A          137 GT--S-NGNL--------TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE-HTKFVHSVRYNPDG-S  203 (611)
T ss_dssp             CC--B-CBCC--------CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECC-CSSCEEEEEECTTS-S
T ss_pred             CC--C-ccee--------cCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeecc-ccCceEEEEECCCC-C
Confidence            33  2 1111        23557899999999987 599999999999999999999999987 99999999999999 7


Q ss_pred             EEEEEECCCcEEEEECCCCCceeEEEec-------CCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC-Cc--------
Q 004969          608 IFATSSFDQDVKLWDLRQKPIQPCYTAS-------SSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG-DP--------  670 (721)
Q Consensus       608 lLaSgs~DgtIrIWDlrs~~~~~~~~~~-------~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g-~~--------  670 (721)
                      ++++|+.|++|++||+.+++..  ..+.       +|.+.+ +++|+|+|++|++++.|++|++||++. +.        
T Consensus       204 ~las~s~D~~i~lwd~~~g~~~--~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~  281 (611)
T 1nr0_A          204 LFASTGGDGTIVLYNGVDGTKT--GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGT  281 (611)
T ss_dssp             EEEEEETTSCEEEEETTTCCEE--EECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred             EEEEEECCCcEEEEECCCCcEe--eeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCC
Confidence            9999999999999999988653  3332       577777 899999999999999999999999872 11        


Q ss_pred             --------------------------------------ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          671 --------------------------------------FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       671 --------------------------------------l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                                                            +.+|...|.+++|+|++       ..|++|+..
T Consensus       282 ~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg-------~~l~s~s~D  345 (611)
T 1nr0_A          282 RIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG-------KTLFSADAE  345 (611)
T ss_dssp             SGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-------SEEEEEETT
T ss_pred             CccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC-------CEEEEEeCC
Confidence                                                  12466789999999999       899999865

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.95  E-value=2.3e-26  Score=245.60  Aligned_cols=228  Identities=12%  Similarity=0.137  Sum_probs=190.5

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe--EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN--IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP  532 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~--~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~  532 (721)
                      .|++++|+| +++++++|+.||.|++||+.+++  .+..+.  +|...|.+++|+ +++++|++++.||.|++||+.+++
T Consensus        10 ~i~~~~~s~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~--~h~~~v~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~   85 (372)
T 1k8k_C           10 PISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELK--EHNGQVTGVDWA-PDSNRIVTCGTDRNAYVWTLKGRT   85 (372)
T ss_dssp             CCCEEEECT-TSSEEEEECSSSEEEEEEEETTEEEEEEEEE--CCSSCEEEEEEE-TTTTEEEEEETTSCEEEEEEETTE
T ss_pred             CeEEEEECC-CCCEEEEEeCCCEEEEEeCCCCcEEeeeeec--CCCCcccEEEEe-CCCCEEEEEcCCCeEEEEECCCCe
Confidence            589999999 99999999999999999999887  667776  899999999998 689999999999999999998754


Q ss_pred             CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcE---EEEEccccCCCeEEEEEcCCCCcEE
Q 004969          533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRR---LQVFADMHKEHINVVKFSNHSPSIF  609 (721)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~---v~~l~~~h~~~V~sI~fsPdg~~lL  609 (721)
                      ...       ......+...|.+++|+|++..+++++.|+.|++||++.++.   ...+...|...|.+++|+|++ .++
T Consensus        86 ~~~-------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l  157 (372)
T 1k8k_C           86 WKP-------TLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS-VLL  157 (372)
T ss_dssp             EEE-------EEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS-SEE
T ss_pred             eee-------eEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCC-CEE
Confidence            210       111234567899999999999999999999999999998763   444444589999999999998 799


Q ss_pred             EEEECCCcEEEEECCC----------------CCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC-CCc-
Q 004969          610 ATSSFDQDVKLWDLRQ----------------KPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR-GDP-  670 (721)
Q Consensus       610 aSgs~DgtIrIWDlrs----------------~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~-  670 (721)
                      ++|+.||.|++||++.                ........+..|...+ +++|+|++++|++++.||.|++||++ +.. 
T Consensus       158 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  237 (372)
T 1k8k_C          158 AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV  237 (372)
T ss_dssp             EEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE
T ss_pred             EEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCcee
Confidence            9999999999999652                1123456666777766 89999999999999999999999997 443 


Q ss_pred             --ccccccCeEEEEECCCCCcccccccEEEEec
Q 004969          671 --FRDFNMSILAAYTRPSSKSEIVKVNLLASTD  701 (721)
Q Consensus       671 --l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs  701 (721)
                        +..+...+.+++|+|++       .++++|+
T Consensus       238 ~~~~~~~~~v~~~~~~~~~-------~~l~~~~  263 (372)
T 1k8k_C          238 ATLASETLPLLAVTFITES-------SLVAAGH  263 (372)
T ss_dssp             EEEECSSCCEEEEEEEETT-------EEEEEET
T ss_pred             EEEccCCCCeEEEEEecCC-------CEEEEEe
Confidence              34556789999999999       7888873

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.95  E-value=8.6e-26  Score=237.05  Aligned_cols=228  Identities=15%  Similarity=0.193  Sum_probs=191.6

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe---EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN---IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM  531 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~---~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~  531 (721)
                      .|++++|+| ++.++++|+ ||.|++||+.++.   ....+...+|...|.+++|+ ++++++++++.||.|++||+.++
T Consensus        53 ~v~~~~~~~-~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~~~d~~~~  129 (337)
T 1gxr_A           53 VVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL-PDGCTLIVGGEASTLSIWDLAAP  129 (337)
T ss_dssp             CCCEEEECS-SSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEEC-TTSSEEEEEESSSEEEEEECCCC
T ss_pred             ceEEEEEec-CCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEc-CCCCEEEEEcCCCcEEEEECCCC
Confidence            589999999 999999999 9999999998765   33444444788999999998 68899999999999999999886


Q ss_pred             CCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEE
Q 004969          532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFAT  611 (721)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaS  611 (721)
                      +...       ......+...|.+++|+|++..+++++.||.|++||+++++.+..+.. |...|.+++|+|++ ..+++
T Consensus       130 ~~~~-------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~-~~l~~  200 (337)
T 1gxr_A          130 TPRI-------KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG-HTDGASCIDISNDG-TKLWT  200 (337)
T ss_dssp             --EE-------EEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTS-SEEEE
T ss_pred             Ccce-------eeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeec-ccCceEEEEECCCC-CEEEE
Confidence            5311       111223556799999999999999999999999999999999999987 99999999999998 79999


Q ss_pred             EECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCc---ccccccCeEEEEECCCCC
Q 004969          612 SSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDP---FRDFNMSILAAYTRPSSK  688 (721)
Q Consensus       612 gs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~---l~~~~~~V~~v~fsP~~~  688 (721)
                      ++.||.|++||+++++.  ...........+++|+|+++++++++.++.|++||++...   +..|...+.++.|+|++ 
T Consensus       201 ~~~dg~i~~~d~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-  277 (337)
T 1gxr_A          201 GGLDNTVRSWDLREGRQ--LQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCG-  277 (337)
T ss_dssp             EETTSEEEEEETTTTEE--EEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTS-
T ss_pred             EecCCcEEEEECCCCce--EeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCC-
Confidence            99999999999998854  3334444445589999999999999999999999998443   44567789999999999 


Q ss_pred             cccccccEEEEecCC
Q 004969          689 SEIVKVNLLASTDHC  703 (721)
Q Consensus       689 ~~~v~v~lLASgs~~  703 (721)
                            .+|++++..
T Consensus       278 ------~~l~~~~~d  286 (337)
T 1gxr_A          278 ------KWFVSTGKD  286 (337)
T ss_dssp             ------SEEEEEETT
T ss_pred             ------CEEEEecCC
Confidence                  888888765

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.95  E-value=6.9e-27  Score=248.34  Aligned_cols=226  Identities=17%  Similarity=0.238  Sum_probs=190.7

Q ss_pred             CeEEEEEeCCC----CCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 004969          455 RPRQFEYHPSI----SCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH  530 (721)
Q Consensus       455 ~V~~lafsP~d----g~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~  530 (721)
                      .|++++|+| +    +.++++|+.||.|++||+.+++.+..+.  +|...|.+++|+|.++.+|++|+.||+|++||+++
T Consensus        71 ~v~~~~~~~-~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  147 (366)
T 3k26_A           71 NFYTCAWTY-DSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV--GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT  147 (366)
T ss_dssp             CEEEEEEEE-CTTTCCEEEEEEETTCEEEEECTTTCCEEEEEE--SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred             cEEEEEecc-CCCCCCCEEEEecCCCEEEEEEchhceEeeeec--CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence            599999999 5    6799999999999999999999998887  89999999999955899999999999999999988


Q ss_pred             CCCcccccccCcceeEe----ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEc-----------------
Q 004969          531 MPPSIRGMHYGAGTVTF----DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFA-----------------  589 (721)
Q Consensus       531 ~~~~~~~~~~~~~~~~~----~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~-----------------  589 (721)
                      ++.          ...+    .|...|.+++|+|++..+++++.||.|++||+++++....+.                 
T Consensus       148 ~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (366)
T 3k26_A          148 DTL----------VAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQ  217 (366)
T ss_dssp             TEE----------EEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCE
T ss_pred             CeE----------EEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccce
Confidence            543          2222    356789999999999999999999999999999875433221                 


Q ss_pred             ----------cccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCc------------eeEEEecCCCCeE-EEEEe
Q 004969          590 ----------DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPI------------QPCYTASSSKGNV-MVCFS  646 (721)
Q Consensus       590 ----------~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~------------~~~~~~~~~~~~v-sl~fS  646 (721)
                                ..|...|.+++|+  + .++++++.|+.|++||+++...            ..+..+..|...+ +++|+
T Consensus       218 ~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  294 (366)
T 3k26_A          218 KIHFPDFSTRDIHRNYVDCVRWL--G-DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFS  294 (366)
T ss_dssp             EECCCSEEECSSCSSCCCEEEEE--T-TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCE
T ss_pred             eeccCccccccCCcceEEEEEEc--C-CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEc
Confidence                      1288999999998  4 6999999999999999987643            3355566666666 89999


Q ss_pred             cC--CCEEEEEeCCCcEEEEEcCCC--------ccccc--ccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          647 PD--DHYLLGKGSGTSMFVQSLRGD--------PFRDF--NMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       647 pd--g~~Lasgs~Dg~I~VWDl~g~--------~l~~~--~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      |+  +++|++|+.||.|++||++..        .+..|  ...|.+++|+|++       .+|++|+..
T Consensus       295 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-------~~l~s~~~d  356 (366)
T 3k26_A          295 MDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDS-------SILIAVCDD  356 (366)
T ss_dssp             ECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTS-------SEEEEEETT
T ss_pred             CCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCC-------CeEEEEeCC
Confidence            99  999999999999999999842        24444  5789999999999       899999876

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.95  E-value=4.4e-26  Score=241.90  Aligned_cols=228  Identities=14%  Similarity=0.215  Sum_probs=184.2

Q ss_pred             CeEEEEEeCCC--CCEEEEEECCCeEEEEECCC-CeEE-EEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 004969          455 RPRQFEYHPSI--SCLMVFGTLDGEIVVVNHEN-ENIV-SYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH  530 (721)
Q Consensus       455 ~V~~lafsP~d--g~~LasGs~DG~I~IWdl~t-g~~i-~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~  530 (721)
                      .|++++|+|+.  +.+|++|+.||.|++||+.+ +..+ ..+.  +|...|++++|+ +++++|++|+.||+|++||+.+
T Consensus        41 ~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--~h~~~v~~~~~~-~~~~~l~s~~~dg~v~iwd~~~  117 (368)
T 3mmy_A           41 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ--MHTGPVLDVCWS-DDGSKVFTASCDKTAKMWDLSS  117 (368)
T ss_dssp             CEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEE--ECSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTT
T ss_pred             ceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEec--cccCCEEEEEEC-cCCCEEEEEcCCCcEEEEEcCC
Confidence            69999999943  69999999999999999997 5544 5555  799999999998 6899999999999999999998


Q ss_pred             CCCcccccccCcceeEeccCCCeEEEEE--ecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccC---------------
Q 004969          531 MPPSIRGMHYGAGTVTFDEFDQLTSVHV--NSMDELFLASGYSKNIALYDINSGRRLQVFADMHK---------------  593 (721)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~--sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~---------------  593 (721)
                      ++.          .....|...|.+++|  ++++..+++++.||.|++||+++++.+..+.. +.               
T Consensus       118 ~~~----------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  186 (368)
T 3mmy_A          118 NQA----------IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL-PERCYCADVIYPMAVVA  186 (368)
T ss_dssp             TEE----------EEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEEC-SSCEEEEEEETTEEEEE
T ss_pred             CCc----------eeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEec-CCCceEEEecCCeeEEE
Confidence            543          234457788999999  88888999999999999999999887766653 22               


Q ss_pred             --------------------------CCeEEEEEcCCC---CcEEEEEECCCcEEEEECCCCCc-eeEEEecCCCC----
Q 004969          594 --------------------------EHINVVKFSNHS---PSIFATSSFDQDVKLWDLRQKPI-QPCYTASSSKG----  639 (721)
Q Consensus       594 --------------------------~~V~sI~fsPdg---~~lLaSgs~DgtIrIWDlrs~~~-~~~~~~~~~~~----  639 (721)
                                                ..+.++.+.++.   +..+++|+.||.|++||++.... .....+.+|..    
T Consensus       187 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~  266 (368)
T 3mmy_A          187 TAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTN  266 (368)
T ss_dssp             EGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC---
T ss_pred             eCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccc
Confidence                                      233444444433   12399999999999999998643 33455555553    


Q ss_pred             ---------eEEEEEecCCCEEEEEeCCCcEEEEEcCC-Cc---ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          640 ---------NVMVCFSPDDHYLLGKGSGTSMFVQSLRG-DP---FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       640 ---------~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g-~~---l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                               ..+++|+|++++|++|+.||.|++||++. ..   +..|...|.+++|+|++       ..||+|+..
T Consensus       267 ~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g-------~~l~~~s~d  336 (368)
T 3mmy_A          267 TSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNG-------NIFAYASSY  336 (368)
T ss_dssp             -CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTS-------SCEEEEECC
T ss_pred             ccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCC-------CeEEEEecc
Confidence                     44899999999999999999999999983 32   45667899999999999       899999876

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.95  E-value=6.6e-26  Score=258.09  Aligned_cols=221  Identities=19%  Similarity=0.285  Sum_probs=191.3

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|++++|+| ++.++++|+.||.|++||. +++.+..+.  +|...|.+++|+ +++++|++++.|++|++||... +. 
T Consensus       346 ~v~~~~~s~-~g~~l~~~~~dg~v~~~~~-~~~~~~~~~--~~~~~v~~~~~s-~dg~~l~~~~~d~~v~~~~~~~-~~-  418 (577)
T 2ymu_A          346 SVWGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLT--GHSSSVRGVAFS-PDGQTIASASDDKTVKLWNRNG-QL-  418 (577)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSEEEEEET-TCCEEEEEE--CCSSCEEEEEEC-TTSSCEEEEETTSEEEEECTTC-CE-
T ss_pred             CEEEEEECC-CCCEEEEEeCCCEEEEEcC-CCCEEEEec--CCCCCeEEEEEC-CCCCEEEEEeCCCEEEEEeCCC-CE-
Confidence            589999999 9999999999999999996 467777776  889999999998 7899999999999999999643 21 


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF  614 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~  614 (721)
                      .        .....|...|++++|+|++..+++++.|+.|++||. +++.+..+.+ |...|.+++|+|++ .++++++.
T Consensus       419 ~--------~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~-~~~~v~~~~~spd~-~~las~~~  487 (577)
T 2ymu_A          419 L--------QTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTG-HSSSVRGVAFSPDG-QTIASASD  487 (577)
T ss_dssp             E--------EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEEC-CSSCEEEEEECTTS-CEEEEEET
T ss_pred             E--------EEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcC-CCCCEEEEEEcCCC-CEEEEEeC
Confidence            1        122346678999999999999999999999999996 5777888886 99999999999999 79999999


Q ss_pred             CCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCc---ccccccCeEEEEECCCCCcc
Q 004969          615 DQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDP---FRDFNMSILAAYTRPSSKSE  690 (721)
Q Consensus       615 DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~---l~~~~~~V~~v~fsP~~~~~  690 (721)
                      |++|++||.. ++.  +..+.+|...+ +++|+|+|++|++++.|+.|++||..+..   +.+|...|.+++|+|++   
T Consensus       488 d~~i~iw~~~-~~~--~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg---  561 (577)
T 2ymu_A          488 DKTVKLWNRN-GQL--LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDG---  561 (577)
T ss_dssp             TSEEEEEETT-SCE--EEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTS---
T ss_pred             CCEEEEEcCC-CCE--EEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCC---
Confidence            9999999964 433  45667777777 89999999999999999999999988764   55678899999999999   


Q ss_pred             cccccEEEEecCC
Q 004969          691 IVKVNLLASTDHC  703 (721)
Q Consensus       691 ~v~v~lLASgs~~  703 (721)
                          ..|+|++..
T Consensus       562 ----~~l~s~~~D  570 (577)
T 2ymu_A          562 ----QTIASASSD  570 (577)
T ss_dssp             ----SCEEEEETT
T ss_pred             ----CEEEEEeCC
Confidence                888998865

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.95  E-value=2.2e-26  Score=251.08  Aligned_cols=236  Identities=8%  Similarity=0.110  Sum_probs=188.8

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|++++|+| ++.+|++|+.||+|++||+.+++.+..+.  +|...|.+++|+ +++.+|++|+.||+|++||+++++..
T Consensus       141 ~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~--~h~~~v~~~~~~-~~~~~l~s~~~d~~v~iwd~~~~~~~  216 (420)
T 3vl1_A          141 EITKLKFFP-SGEALISSSQDMQLKIWSVKDGSNPRTLI--GHRATVTDIAII-DRGRNVLSASLDGTIRLWECGTGTTI  216 (420)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSEEEEEETTTCCCCEEEE--CCSSCEEEEEEE-TTTTEEEEEETTSCEEEEETTTTEEE
T ss_pred             ccEEEEECC-CCCEEEEEeCCCeEEEEeCCCCcCceEEc--CCCCcEEEEEEc-CCCCEEEEEcCCCcEEEeECCCCcee
Confidence            699999999 89999999999999999999999888887  899999999998 68899999999999999999986542


Q ss_pred             cccccc---Ccce---eEe----------ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEE
Q 004969          535 IRGMHY---GAGT---VTF----------DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINV  598 (721)
Q Consensus       535 ~~~~~~---~~~~---~~~----------~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~s  598 (721)
                      .. ...   +...   ..+          .+...+.+++|+|++..+++++.||.|++||+++++.+..+...|...|.+
T Consensus       217 ~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~  295 (420)
T 3vl1_A          217 HT-FNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNS  295 (420)
T ss_dssp             EE-ECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEE
T ss_pred             EE-eecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCcee
Confidence            11 111   1000   000          123456667778899999999999999999999999888887668999999


Q ss_pred             EEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEec-CCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCC--------
Q 004969          599 VKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTAS-SSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGD--------  669 (721)
Q Consensus       599 I~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~-~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~--------  669 (721)
                      ++|+|++..++++|+.||.|++||++++... +..+. ++...+...+.+++++|++++.|+.|++|++...        
T Consensus       296 ~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~  374 (420)
T 3vl1_A          296 LTVDGNNANYIYAGYENGMLAQWDLRSPECP-VGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIE  374 (420)
T ss_dssp             EEECSSCTTEEEEEETTSEEEEEETTCTTSC-SEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEEC
T ss_pred             EEEeCCCCCEEEEEeCCCeEEEEEcCCCcCc-hhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCcccee
Confidence            9999999449999999999999999987432 22333 3556664446678999999999999999998731        


Q ss_pred             -----cccccccCeEEEEECCCCCccccccc----EEEEecCC
Q 004969          670 -----PFRDFNMSILAAYTRPSSKSEIVKVN----LLASTDHC  703 (721)
Q Consensus       670 -----~l~~~~~~V~~v~fsP~~~~~~v~v~----lLASgs~~  703 (721)
                           .+..+...|..++|+|++       .    ++|+|+..
T Consensus       375 ~~~~~~~~~~~~~v~~~~~s~~~-------~~~g~l~a~g~~g  410 (420)
T 3vl1_A          375 FETPTFLVSNDDAVSQFCYVSDD-------ESNGEVLEVGKNN  410 (420)
T ss_dssp             TTSCEEECCSSCCCCEEEEECCS-------SSSCEEEEEETTT
T ss_pred             ccCccEEccCCcceEEEEEccCC-------CCcceEEEEcCCc
Confidence                 133446689999999999       6    77777653

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.95  E-value=5.1e-26  Score=243.87  Aligned_cols=193  Identities=14%  Similarity=0.170  Sum_probs=169.6

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|.++.|+| ++ .+++|+.||+|++||+.+++.+..+.  +|.+.|.+++|+ +++.++++|+.||+|++||++++.. 
T Consensus       145 ~v~~~~~~~-~~-~l~s~s~d~~i~~wd~~~~~~~~~~~--~h~~~v~~~~~~-~~~~~l~sg~~d~~v~~wd~~~~~~-  218 (340)
T 1got_B          145 YLSCCRFLD-DN-QIVTSSGDTTCALWDIETGQQTTTFT--GHTGDVMSLSLA-PDTRLFVSGACDASAKLWDVREGMC-  218 (340)
T ss_dssp             CEEEEEEEE-TT-EEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCSE-
T ss_pred             cEEEEEECC-CC-cEEEEECCCcEEEEECCCCcEEEEEc--CCCCceEEEEEC-CCCCEEEEEeCCCcEEEEECCCCee-
Confidence            589999998 54 58999999999999999999988887  899999999998 6889999999999999999988543 


Q ss_pred             ccccccCcceeEe-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcc-ccCCCeEEEEEcCCCCcEEEEE
Q 004969          535 IRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD-MHKEHINVVKFSNHSPSIFATS  612 (721)
Q Consensus       535 ~~~~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~-~h~~~V~sI~fsPdg~~lLaSg  612 (721)
                               ...+ .|...|.+++|+|++..+++++.||+|++||+++++.+..+.. .+...|.+++|+|+| .++++|
T Consensus       219 ---------~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g  288 (340)
T 1got_B          219 ---------RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG-RLLLAG  288 (340)
T ss_dssp             ---------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTS-SEEEEE
T ss_pred             ---------EEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCC-CEEEEE
Confidence                     2222 3567799999999999999999999999999999998887762 133579999999999 899999


Q ss_pred             ECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEE
Q 004969          613 SFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQS  665 (721)
Q Consensus       613 s~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWD  665 (721)
                      +.|+.|++||+.++..  ...+.+|...+ +++|+|+|.+|++|+.|+.|++||
T Consensus       289 ~~d~~i~vwd~~~~~~--~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          289 YDDFNCNVWDALKADR--AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             ETTSEEEEEETTTCCE--EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCCeEEEEEcccCcE--eeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            9999999999998754  55667888887 899999999999999999999996

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.95  E-value=6.9e-26  Score=244.84  Aligned_cols=195  Identities=15%  Similarity=0.204  Sum_probs=171.8

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeC-CCCEEEEEeCCCeEEEEEcCCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKK-YPSKLIAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~-d~~~LaSgs~DGtVrIWDi~~~~~  533 (721)
                      .|.+++|+| ++..+++|+.||+|++||+++++.+..+.  +|...|.+++|+|. ++++|++|+.||+|++||+++++.
T Consensus       156 ~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~  232 (354)
T 2pbi_B          156 YLSACSFTN-SDMQILTASGDGTCALWDVESGQLLQSFH--GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC  232 (354)
T ss_dssp             CEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCE
T ss_pred             cEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEc--CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcE
Confidence            589999999 88999999999999999999999998887  89999999999854 468999999999999999998654


Q ss_pred             cccccccCcceeEe-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcc-ccCCCeEEEEEcCCCCcEEEE
Q 004969          534 SIRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD-MHKEHINVVKFSNHSPSIFAT  611 (721)
Q Consensus       534 ~~~~~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~-~h~~~V~sI~fsPdg~~lLaS  611 (721)
                                ...+ .|...|.+++|+|++..+++++.|++|++||+++++.+..+.. .+...+.+++|+|++ .++++
T Consensus       233 ----------~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~l~~  301 (354)
T 2pbi_B          233 ----------VQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSG-RLLFA  301 (354)
T ss_dssp             ----------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTS-SEEEE
T ss_pred             ----------EEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCC-CEEEE
Confidence                      1222 3567899999999999999999999999999999988877763 134578999999999 89999


Q ss_pred             EECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEE
Q 004969          612 SSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQS  665 (721)
Q Consensus       612 gs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWD  665 (721)
                      |+.|++|++||++++..  +..+.+|...+ +++|+|+|++|++|+.|+.|++|+
T Consensus       302 g~~d~~i~vwd~~~~~~--~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          302 GYNDYTINVWDVLKGSR--VSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EETTSCEEEEETTTCSE--EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EECCCcEEEEECCCCce--EEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            99999999999998754  55667888887 899999999999999999999996

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.95  E-value=9.7e-26  Score=243.14  Aligned_cols=230  Identities=23%  Similarity=0.310  Sum_probs=191.6

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeec-----------CCCCCCeEEEEEeeCCCCEEEEEeCCCeE
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPS-----------FGAMNSVLGLCWLKKYPSKLIAGSDNGSL  523 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~-----------~~H~~~V~sl~fsp~d~~~LaSgs~DGtV  523 (721)
                      .|++++|+|.+++++++|+.||.|++||+.++.....+..           .+|...|.+++|+|.++.++++++.||.|
T Consensus        45 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i  124 (408)
T 4a11_B           45 GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTL  124 (408)
T ss_dssp             CEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEE
T ss_pred             cEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeE
Confidence            5999999998889999999999999999998765433321           25899999999996588899999999999


Q ss_pred             EEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCC---EEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEE
Q 004969          524 KLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDE---LFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVK  600 (721)
Q Consensus       524 rIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~---~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~  600 (721)
                      ++||+.+++.          ...+.+...+.++.+++.+.   .+++++.|+.|++||+++++.+..+.+ |...|.+++
T Consensus       125 ~iwd~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~v~~~~  193 (408)
T 4a11_B          125 KVWDTNTLQT----------ADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQG-HRQEILAVS  193 (408)
T ss_dssp             EEEETTTTEE----------EEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECC-CCSCEEEEE
T ss_pred             EEeeCCCCcc----------ceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecC-CCCcEEEEE
Confidence            9999998543          33445667789999988544   899999999999999999999999987 999999999


Q ss_pred             EcCCCCcEEEEEECCCcEEEEECCCCCceeEEEe---------------cCCCCeE-EEEEecCCCEEEEEeCCCcEEEE
Q 004969          601 FSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTA---------------SSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQ  664 (721)
Q Consensus       601 fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~---------------~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VW  664 (721)
                      |+|++..++++|+.||.|++||++++.. ....+               ..|...+ +++|+|+|++|++++.||.|++|
T Consensus       194 ~~~~~~~ll~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  272 (408)
T 4a11_B          194 WSPRYDYILATASADSRVKLWDVRRASG-CLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW  272 (408)
T ss_dssp             ECSSCTTEEEEEETTSCEEEEETTCSSC-CSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             ECCCCCcEEEEEcCCCcEEEEECCCCCc-ccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEE
Confidence            9999955899999999999999987642 12222               3455556 89999999999999999999999


Q ss_pred             EcCC-Cc--------------------------------------------------ccccccCeEEEEECCCCCccccc
Q 004969          665 SLRG-DP--------------------------------------------------FRDFNMSILAAYTRPSSKSEIVK  693 (721)
Q Consensus       665 Dl~g-~~--------------------------------------------------l~~~~~~V~~v~fsP~~~~~~v~  693 (721)
                      |++. ..                                                  +..|...|.+++|+|++      
T Consensus       273 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~------  346 (408)
T 4a11_B          273 NSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNF------  346 (408)
T ss_dssp             ETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTT------
T ss_pred             ECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCC------
Confidence            9862 11                                                  13456789999999999      


Q ss_pred             ccEEEEecCC
Q 004969          694 VNLLASTDHC  703 (721)
Q Consensus       694 v~lLASgs~~  703 (721)
                       .+|++|+..
T Consensus       347 -~~l~s~~~d  355 (408)
T 4a11_B          347 -QELYSGSRD  355 (408)
T ss_dssp             -TEEEEEETT
T ss_pred             -CEEEEECCC
Confidence             889999876

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.95  E-value=1.1e-25  Score=246.47  Aligned_cols=225  Identities=14%  Similarity=0.237  Sum_probs=194.2

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|++++|+| ++.++++|+.||.|++||+.+++.+..+.  +|...|.+++|.   +..+++|+.||.|++||++.....
T Consensus       136 ~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~  209 (401)
T 4aez_A          136 YVASVKWSH-DGSFLSVGLGNGLVDIYDVESQTKLRTMA--GHQARVGCLSWN---RHVLSSGSRSGAIHHHDVRIANHQ  209 (401)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCE
T ss_pred             CEEEEEECC-CCCEEEEECCCCeEEEEECcCCeEEEEec--CCCCceEEEEEC---CCEEEEEcCCCCEEEEecccCcce
Confidence            599999999 99999999999999999999999998887  899999999995   579999999999999999864432


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE-
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS-  613 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs-  613 (721)
                      .        .....|...|.+++|+|++..+++++.|+.|++||+++++.+..+.. |...|.+++|+|++..++++|+ 
T Consensus       210 ~--------~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~p~~~~ll~~~~g  280 (401)
T 4aez_A          210 I--------GTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTN-HNAAVKAVAWCPWQSNLLATGGG  280 (401)
T ss_dssp             E--------EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECC-CSSCCCEEEECTTSTTEEEEECC
T ss_pred             e--------eEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecC-CcceEEEEEECCCCCCEEEEecC
Confidence            1        12234667899999999999999999999999999999999999986 9999999999998878888876 


Q ss_pred             -CCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEe--CCCcEEEEEcCCCc------ccccccCeEEEEEC
Q 004969          614 -FDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKG--SGTSMFVQSLRGDP------FRDFNMSILAAYTR  684 (721)
Q Consensus       614 -~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs--~Dg~I~VWDl~g~~------l~~~~~~V~~v~fs  684 (721)
                       .|+.|++||+++++.  ...+..+....+++|+|+++++++++  .||.|++||+....      +..|...|.+++|+
T Consensus       281 s~d~~i~i~d~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s  358 (401)
T 4aez_A          281 TMDKQIHFWNAATGAR--VNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALS  358 (401)
T ss_dssp             TTTCEEEEEETTTCCE--EEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEEC
T ss_pred             CCCCEEEEEECCCCCE--EEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEEC
Confidence             799999999999865  44444455555999999999999954  89999999987421      34567899999999


Q ss_pred             CCCCcccccccEEEEecCC
Q 004969          685 PSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       685 P~~~~~~v~v~lLASgs~~  703 (721)
                      |++       ..|++|+..
T Consensus       359 ~dg-------~~l~s~~~d  370 (401)
T 4aez_A          359 PDG-------RILSTAASD  370 (401)
T ss_dssp             TTS-------SEEEEECTT
T ss_pred             CCC-------CEEEEEeCC
Confidence            999       899998876

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.95  E-value=4.1e-25  Score=231.87  Aligned_cols=224  Identities=11%  Similarity=0.168  Sum_probs=190.8

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|++++|+| +++++++|+.||.|++||+.+++........+|...|.+++|+ ++++++++++.||.|++||+++++. 
T Consensus        99 ~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~v~~~d~~~~~~-  175 (337)
T 1gxr_A           99 YIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS-PDSKVCFSCCSDGNIAVWDLHNQTL-  175 (337)
T ss_dssp             BEEEEEECT-TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEE-
T ss_pred             cEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEEC-CCCCEEEEEeCCCcEEEEeCCCCce-
Confidence            599999999 9999999999999999999988743333333888999999998 6889999999999999999987543 


Q ss_pred             ccccccCcceeEe-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969          535 IRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS  613 (721)
Q Consensus       535 ~~~~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs  613 (721)
                               ...+ .|...|.+++|+|++..+++++.||.|++||+++++.+..+.  +...+.+++|+|++ ..+++++
T Consensus       176 ---------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~--~~~~v~~~~~s~~~-~~l~~~~  243 (337)
T 1gxr_A          176 ---------VRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD--FTSQIFSLGYCPTG-EWLAVGM  243 (337)
T ss_dssp             ---------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECTTS-SEEEEEE
T ss_pred             ---------eeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec--CCCceEEEEECCCC-CEEEEEc
Confidence                     1222 356779999999999999999999999999999999988886  88899999999999 7999999


Q ss_pred             CCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC-Ccc--cccccCeEEEEECCCCCc
Q 004969          614 FDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG-DPF--RDFNMSILAAYTRPSSKS  689 (721)
Q Consensus       614 ~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g-~~l--~~~~~~V~~v~fsP~~~~  689 (721)
                      .|+.|++||+++++.   .....|...+ +++|+|++++|++++.||.|++|++.. ...  ..+...+.++.|+|++  
T Consensus       244 ~~~~i~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--  318 (337)
T 1gxr_A          244 ESSNVEVLHVNKPDK---YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDD--  318 (337)
T ss_dssp             TTSCEEEEETTSSCE---EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTS--
T ss_pred             CCCcEEEEECCCCCe---EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCC--
Confidence            999999999998753   3455666666 899999999999999999999999983 332  2356789999999999  


Q ss_pred             ccccccEEEEecCC
Q 004969          690 EIVKVNLLASTDHC  703 (721)
Q Consensus       690 ~~v~v~lLASgs~~  703 (721)
                           ..|++++..
T Consensus       319 -----~~l~~~~~d  327 (337)
T 1gxr_A          319 -----KYIVTGSGD  327 (337)
T ss_dssp             -----CEEEEEETT
T ss_pred             -----CEEEEecCC
Confidence                 888988865

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.95  E-value=1.5e-25  Score=263.45  Aligned_cols=227  Identities=18%  Similarity=0.255  Sum_probs=187.3

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCC-----eEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENE-----NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIR  529 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg-----~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~  529 (721)
                      .|++++|+|.++++|++|+.||+|++|++.++     .....+.  +|...|.+++|+ +++++|++|+.||+|++||+.
T Consensus       384 ~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~--~h~~~v~~v~~s-~~g~~l~sgs~Dg~v~vwd~~  460 (694)
T 3dm0_A          384 MVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLT--GHSHFVEDVVLS-SDGQFALSGSWDGELRLWDLA  460 (694)
T ss_dssp             CEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEE--CCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETT
T ss_pred             eeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceec--CCCCcEEEEEEC-CCCCEEEEEeCCCcEEEEECC
Confidence            59999999967789999999999999998753     3445555  899999999998 789999999999999999998


Q ss_pred             CCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEc--cccCCCeEEEEEcCCC-C
Q 004969          530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFA--DMHKEHINVVKFSNHS-P  606 (721)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~--~~h~~~V~sI~fsPdg-~  606 (721)
                      ++...         .....|...|.+++|+|++..+++++.|++|++||...........  .+|...|.+++|+|++ .
T Consensus       461 ~~~~~---------~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  531 (694)
T 3dm0_A          461 AGVST---------RRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQ  531 (694)
T ss_dssp             TTEEE---------EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSS
T ss_pred             CCcce---------eEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCc
Confidence            85431         1223466789999999999999999999999999987554433322  2488999999999986 2


Q ss_pred             cEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC-CCcccc--cccCeEEEE
Q 004969          607 SIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR-GDPFRD--FNMSILAAY  682 (721)
Q Consensus       607 ~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~l~~--~~~~V~~v~  682 (721)
                      ..+++|+.|++|++||+++.+.  ...+.+|.+.+ +++|+|+|++|++|+.||.|++||++ ++.+..  +...+.++.
T Consensus       532 ~~l~s~s~d~~v~vwd~~~~~~--~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~  609 (694)
T 3dm0_A          532 PTIVSASWDKTVKVWNLSNCKL--RSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALC  609 (694)
T ss_dssp             CEEEEEETTSCEEEEETTTCCE--EEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEE
T ss_pred             ceEEEEeCCCeEEEEECCCCcE--EEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEE
Confidence            4899999999999999998754  55667888877 89999999999999999999999997 333332  245799999


Q ss_pred             ECCCCCcccccccEEEEecC
Q 004969          683 TRPSSKSEIVKVNLLASTDH  702 (721)
Q Consensus       683 fsP~~~~~~v~v~lLASgs~  702 (721)
                      |+|++       .++++++.
T Consensus       610 ~sp~~-------~~l~~~~~  622 (694)
T 3dm0_A          610 FSPNR-------YWLCAATE  622 (694)
T ss_dssp             ECSSS-------SEEEEEET
T ss_pred             EcCCC-------cEEEEEcC
Confidence            99998       66666653

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.95  E-value=1.5e-25  Score=263.47  Aligned_cols=227  Identities=15%  Similarity=0.199  Sum_probs=189.3

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|++++|+| ++++|++|+.||+|+|||+.++.....+.  +|...|.+++|+ +++.+|++|+.||+|++||.......
T Consensus       432 ~v~~v~~s~-~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~--~h~~~v~~~~~s-~~~~~l~s~s~D~~i~iwd~~~~~~~  507 (694)
T 3dm0_A          432 FVEDVVLSS-DGQFALSGSWDGELRLWDLAAGVSTRRFV--GHTKDVLSVAFS-LDNRQIVSASRDRTIKLWNTLGECKY  507 (694)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEE--CCSSCEEEEEEC-TTSSCEEEEETTSCEEEECTTSCEEE
T ss_pred             cEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcceeEEe--CCCCCEEEEEEe-CCCCEEEEEeCCCEEEEEECCCCcce
Confidence            599999999 99999999999999999999999988887  899999999998 78899999999999999998653210


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCC--CEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMD--ELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS  612 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~--~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg  612 (721)
                       ....     ....|...|.+++|+|++  ..+++++.|++|++||+++++....+.+ |.+.|++++|+|++ .++++|
T Consensus       508 -~~~~-----~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~-h~~~v~~v~~spdg-~~l~sg  579 (694)
T 3dm0_A          508 -TISE-----GGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAG-HTGYVSTVAVSPDG-SLCASG  579 (694)
T ss_dssp             -EECS-----STTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTS-SEEEEE
T ss_pred             -eecc-----CCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcC-CCCCEEEEEEeCCC-CEEEEE
Confidence             0000     001355679999999986  5799999999999999999999999987 99999999999999 899999


Q ss_pred             ECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCc-cccc-----------------
Q 004969          613 SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDP-FRDF-----------------  674 (721)
Q Consensus       613 s~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~-l~~~-----------------  674 (721)
                      +.||+|++||+++++.  +..+..+....+++|+|++.++++++ ++.|++||++... +..+                 
T Consensus       580 ~~Dg~i~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  656 (694)
T 3dm0_A          580 GKDGVVLLWDLAEGKK--LYSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPA  656 (694)
T ss_dssp             ETTSBCEEEETTTTEE--EECCBCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC------------
T ss_pred             eCCCeEEEEECCCCce--EEEecCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccc
Confidence            9999999999999843  55555555555999999999988776 6679999997432 1111                 


Q ss_pred             -----ccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          675 -----NMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       675 -----~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                           ...+.+++|+|++       ..|++|+..
T Consensus       657 ~~~~~~~~~~~l~~spdg-------~~l~sgs~D  683 (694)
T 3dm0_A          657 ATKRKVIYCTSLNWSADG-------STLFSGYTD  683 (694)
T ss_dssp             ----CCCCEEEEEECTTS-------SEEEEEETT
T ss_pred             cCCceeEEeeeEEEcCCC-------CEEEEEcCC
Confidence                 1136789999999       999999887

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.95  E-value=2e-25  Score=241.41  Aligned_cols=202  Identities=22%  Similarity=0.286  Sum_probs=170.5

Q ss_pred             CeEEEEEeCCCC-CEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969          455 RPRQFEYHPSIS-CLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       455 ~V~~lafsP~dg-~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~  533 (721)
                      .|++++|+| ++ .++++|+.||.|+|||+.+++....+...+|...|.+++|+|.++.+|++++.||+|++||+.+...
T Consensus        75 ~v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  153 (383)
T 3ei3_B           75 RVTSLEWHP-THPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVI  153 (383)
T ss_dssp             CEEEEEECS-SCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEE
T ss_pred             CEEEEEECC-CCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCce
Confidence            599999999 66 9999999999999999999988888776689999999999954789999999999999999986221


Q ss_pred             cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969          534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS  613 (721)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs  613 (721)
                        .....+     ..+...|.+++|+|++..+++++.|+.|++||+ +++.+..+.+ |...|.+++|+|++..++++|+
T Consensus       154 --~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~  224 (383)
T 3ei3_B          154 --QVFAKT-----DSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKL-HKAKVTHAEFNPRCDWLMATSS  224 (383)
T ss_dssp             --EEEECC-----CCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEEC-SSSCEEEEEECSSCTTEEEEEE
T ss_pred             --EEEecc-----CCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEecc-CCCcEEEEEECCCCCCEEEEEe
Confidence              111110     123366999999999999999999999999999 5788888886 9999999999999944999999


Q ss_pred             CCCcEEEEECCCCC--ceeEEEecCCCCeE-EEEEec-CCCEEEEEeCCCcEEEEEcC
Q 004969          614 FDQDVKLWDLRQKP--IQPCYTASSSKGNV-MVCFSP-DDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       614 ~DgtIrIWDlrs~~--~~~~~~~~~~~~~v-sl~fSp-dg~~Lasgs~Dg~I~VWDl~  667 (721)
                      .|++|++||+++..  ....... +|...+ +++|+| +|.+|++++.|+.|++||++
T Consensus       225 ~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~  281 (383)
T 3ei3_B          225 VDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSY  281 (383)
T ss_dssp             TTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETT
T ss_pred             CCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECC
Confidence            99999999999732  1223333 355555 999999 99999999999999999987

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.95  E-value=8.9e-26  Score=247.99  Aligned_cols=236  Identities=18%  Similarity=0.274  Sum_probs=180.2

Q ss_pred             cCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe-----------EEEEeecCCCC------------CCeEEEEEeeCC
Q 004969          454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN-----------IVSYIPSFGAM------------NSVLGLCWLKKY  510 (721)
Q Consensus       454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~-----------~i~~l~~~~H~------------~~V~sl~fsp~d  510 (721)
                      -.|++++|+| ++++||+|+.||.|+|||+.++.           ....+.  +|.            ..|++++|+| +
T Consensus        29 ~~V~~v~~s~-~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~--~h~~~~~~~~~~~~~~~V~~l~~~~-~  104 (447)
T 3dw8_B           29 DIISTVEFNH-SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQ--SHEPEFDYLKSLEIEEKINKIRWLP-Q  104 (447)
T ss_dssp             GSEEEEEECS-SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEE--CCCCEEEGGGTEEECCCCCEEEECC-C
T ss_pred             CcEEEEEECC-CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccc--cccccccccccccccCceEEEEEcC-C
Confidence            3699999999 99999999999999999999876           466666  787            8899999994 5


Q ss_pred             C--CEEEEEeCCCeEEEEEcCCCCCccccc--ccC---------------------------cc--eeEeccCCCeEEEE
Q 004969          511 P--SKLIAGSDNGSLKLYDIRHMPPSIRGM--HYG---------------------------AG--TVTFDEFDQLTSVH  557 (721)
Q Consensus       511 ~--~~LaSgs~DGtVrIWDi~~~~~~~~~~--~~~---------------------------~~--~~~~~~~~~V~sv~  557 (721)
                      +  ..|++++.||+|++||+.++.......  ...                           ..  .....|...|.+++
T Consensus       105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  184 (447)
T 3dw8_B          105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS  184 (447)
T ss_dssp             CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred             CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence            5  799999999999999997633210000  000                           00  11124677899999


Q ss_pred             EecCCCEEEEEeCCCcEEEEECCC-CcEEEE-------EccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCce
Q 004969          558 VNSMDELFLASGYSKNIALYDINS-GRRLQV-------FADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQ  629 (721)
Q Consensus       558 ~sp~~~~lls~g~Dg~IrlWDl~s-~~~v~~-------l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~  629 (721)
                      |+|++..++++ .|+.|++||+++ ++.+..       +.+ |...|.+++|+|+++.++++|+.||+|++||++++...
T Consensus       185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~  262 (447)
T 3dw8_B          185 INSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEE-LTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC  262 (447)
T ss_dssp             ECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGG-CCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred             EcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccc-cCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence            99999999988 899999999994 444443       334 99999999999998679999999999999999987541


Q ss_pred             --eEEEecCCCC------------eE-EEEEecCCCEEEEEeCCCcEEEEEcC--CCccc---cccc-------------
Q 004969          630 --PCYTASSSKG------------NV-MVCFSPDDHYLLGKGSGTSMFVQSLR--GDPFR---DFNM-------------  676 (721)
Q Consensus       630 --~~~~~~~~~~------------~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~--g~~l~---~~~~-------------  676 (721)
                        ....+.++..            .+ +++|+|+|++|++++. +.|++||++  +.++.   .|..             
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  341 (447)
T 3dw8_B          263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDC  341 (447)
T ss_dssp             CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSG
T ss_pred             cceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccc
Confidence              1344555553            44 9999999999999998 999999997  33333   2221             


Q ss_pred             --CeEEEEECCCCCcccccccEEEEecCC
Q 004969          677 --SILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       677 --~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                        .+..++|+|++       ..|++|+..
T Consensus       342 i~~~~~~~~s~~~-------~~l~s~s~d  363 (447)
T 3dw8_B          342 IFDKFECCWNGSD-------SVVMTGSYN  363 (447)
T ss_dssp             GGCCCCEEECTTS-------SEEEEECST
T ss_pred             cccceEEEECCCC-------CEEEEeccC
Confidence              13348999999       888888865

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.95  E-value=3.4e-26  Score=249.24  Aligned_cols=206  Identities=19%  Similarity=0.267  Sum_probs=173.0

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeec---CCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPS---FGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM  531 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~---~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~  531 (721)
                      .|.++.|+|.++..+++|+.||+|++||+.+++.+..+..   .+|...|.+++|++.+++++++|+.||+|++||++..
T Consensus       159 ~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~  238 (380)
T 3iz6_a          159 YASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT  238 (380)
T ss_dssp             CCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTT
T ss_pred             ceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCC
Confidence            5778899996677899999999999999999998887732   3789999999998778999999999999999999854


Q ss_pred             CCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccc------cCCCeEEEEEcCCC
Q 004969          532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADM------HKEHINVVKFSNHS  605 (721)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~------h~~~V~sI~fsPdg  605 (721)
                      ...+.        ....|...|.+++|+|++..+++++.||+|++||+++++.+..+...      +...|.+++|+|+|
T Consensus       239 ~~~~~--------~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  310 (380)
T 3iz6_a          239 SRAVR--------TYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISG  310 (380)
T ss_dssp             CCCCE--------EECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSS
T ss_pred             CcceE--------EECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCC
Confidence            33221        12246678999999999999999999999999999999998888641      12348999999999


Q ss_pred             CcEEEEEECCCcEEEEECCCCCceeEEE--ecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004969          606 PSIFATSSFDQDVKLWDLRQKPIQPCYT--ASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGD  669 (721)
Q Consensus       606 ~~lLaSgs~DgtIrIWDlrs~~~~~~~~--~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~  669 (721)
                       .++++|+.||.|++||+.+++......  ..+|.+.+ +++|+|+|.+|++|+.|+.|++|++.++
T Consensus       311 -~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~  376 (380)
T 3iz6_a          311 -RLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH  376 (380)
T ss_dssp             -SEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred             -CEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence             899999999999999998875432221  14677777 9999999999999999999999999854

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.95  E-value=4.4e-26  Score=247.65  Aligned_cols=238  Identities=16%  Similarity=0.278  Sum_probs=192.7

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCC----CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHEN----ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH  530 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~t----g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~  530 (721)
                      .|++++|+| ++.+|++|+.||.|++||+.+    .+.+..+.  +|...|++++|+|.++.+|++++.||+|++||+.+
T Consensus        69 ~v~~~~~s~-~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~  145 (416)
T 2pm9_A           69 KFNDLDWSH-NNKIIAGALDNGSLELYSTNEANNAINSMARFS--NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNK  145 (416)
T ss_dssp             CEEEEEECS-SSSCEEEEESSSCEEEECCSSTTSCCCEEEECC--CSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTT
T ss_pred             ceEEEEECC-CCCeEEEEccCCeEEEeecccccccccchhhcc--CCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCC
Confidence            699999999 999999999999999999987    34666665  89999999999954489999999999999999998


Q ss_pred             CCCcccccccCcceeEeccCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCcEEEEEcccc------CCCeEEEEEcC
Q 004969          531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSM-DELFLASGYSKNIALYDINSGRRLQVFADMH------KEHINVVKFSN  603 (721)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~-~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h------~~~V~sI~fsP  603 (721)
                      +.................|...|.+++|+|+ +..+++++.|+.|++||+++++.+..+.. |      ...|.+++|+|
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~  224 (416)
T 2pm9_A          146 CTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSY-TSPNSGIKQQLSVVEWHP  224 (416)
T ss_dssp             TSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECC-CCCSSCCCCCEEEEEECS
T ss_pred             CccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEec-cccccccCCceEEEEECC
Confidence            6521100000000111245678999999998 67888889999999999999999998885 4      78999999999


Q ss_pred             CCCcEEEEEECCC---cEEEEECCCCCceeEEEec-CCCCeE-EEEEec-CCCEEEEEeCCCcEEEEEcC-CCc---ccc
Q 004969          604 HSPSIFATSSFDQ---DVKLWDLRQKPIQPCYTAS-SSKGNV-MVCFSP-DDHYLLGKGSGTSMFVQSLR-GDP---FRD  673 (721)
Q Consensus       604 dg~~lLaSgs~Dg---tIrIWDlrs~~~~~~~~~~-~~~~~v-sl~fSp-dg~~Lasgs~Dg~I~VWDl~-g~~---l~~  673 (721)
                      +++.++++++.|+   .|++||++++. .+...+. +|...+ +++|+| ++.+|++++.||.|++||++ +..   +..
T Consensus       225 ~~~~~l~~~~~d~~~~~i~~~d~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~  303 (416)
T 2pm9_A          225 KNSTRVATATGSDNDPSILIWDLRNAN-TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPA  303 (416)
T ss_dssp             SCTTEEEEEECCSSSCCCCEEETTSTT-SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEEC
T ss_pred             CCCCEEEEEECCCCCceEEEEeCCCCC-CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecC
Confidence            9867999999999   99999999863 2234455 666666 899999 99999999999999999997 333   445


Q ss_pred             cccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          674 FNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       674 ~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      |...|.+++|+|+++      .+|++++..
T Consensus       304 ~~~~v~~~~~s~~~~------~~l~s~~~d  327 (416)
T 2pm9_A          304 RGNWCFKTKFAPEAP------DLFACASFD  327 (416)
T ss_dssp             SSSCCCCEEECTTCT------TEEEECCSS
T ss_pred             CCCceEEEEECCCCC------CEEEEEecC
Confidence            677899999999873      477777765

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.95  E-value=1.6e-25  Score=235.48  Aligned_cols=203  Identities=13%  Similarity=0.176  Sum_probs=164.7

Q ss_pred             CeEEEEEeCC-CCCEEEEEECCCeEEEEECCCCe--EEEEeecCCCCCCeEEEEEeeCC-CCEEEEEeCCCeEEEEEcCC
Q 004969          455 RPRQFEYHPS-ISCLMVFGTLDGEIVVVNHENEN--IVSYIPSFGAMNSVLGLCWLKKY-PSKLIAGSDNGSLKLYDIRH  530 (721)
Q Consensus       455 ~V~~lafsP~-dg~~LasGs~DG~I~IWdl~tg~--~i~~l~~~~H~~~V~sl~fsp~d-~~~LaSgs~DGtVrIWDi~~  530 (721)
                      .|++++|+|. ++.+|++|+.||+|+|||+.+++  .+..+.  +|...|.+++|+|.. +.+|++|+.||+|++||++.
T Consensus        55 ~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~--~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~  132 (297)
T 2pm7_B           55 PVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHA--VHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKE  132 (297)
T ss_dssp             CEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEEC--CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCS
T ss_pred             CeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEee--cCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecC
Confidence            5999999862 48999999999999999999875  344444  789999999999542 78999999999999999987


Q ss_pred             CCCcccccccCcceeEeccCCCeEEEEEecC-------------CCEEEEEeCCCcEEEEECCCCc----EEEEEccccC
Q 004969          531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSM-------------DELFLASGYSKNIALYDINSGR----RLQVFADMHK  593 (721)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~-------------~~~lls~g~Dg~IrlWDl~s~~----~v~~l~~~h~  593 (721)
                      +...       .......|...|.+++|+|+             +..+++++.|++|++||+++++    ....+.+ |.
T Consensus       133 ~~~~-------~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~-H~  204 (297)
T 2pm7_B          133 NGTT-------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG-HS  204 (297)
T ss_dssp             SSCB-------CCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECC-CS
T ss_pred             CCce-------eeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecC-CC
Confidence            5321       01223346678999999986             4689999999999999998876    5667776 99


Q ss_pred             CCeEEEEEcCCC--CcEEEEEECCCcEEEEECCCCCce-eEEEe--cCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          594 EHINVVKFSNHS--PSIFATSSFDQDVKLWDLRQKPIQ-PCYTA--SSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       594 ~~V~sI~fsPdg--~~lLaSgs~DgtIrIWDlrs~~~~-~~~~~--~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                      ..|.+++|+|++  +.+|++|+.|++|++||+++.... ....+  ..+...+ +++|+|+|++|++++.|+.|++|+..
T Consensus       205 ~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          205 DWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             SCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             CceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            999999999985  479999999999999999874311 11222  3455556 89999999999999999999999976

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.94  E-value=2.3e-25  Score=237.95  Aligned_cols=234  Identities=14%  Similarity=0.065  Sum_probs=193.0

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|++++|+| +++++++|+.||.|++||+.+++....+...+|...|.+++|+ +++.+|++|+.||.|++||+..+...
T Consensus        54 ~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~v~i~d~~~~~~~  131 (372)
T 1k8k_C           54 QVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWA-PNEKKFAVGSGSRVISICYFEQENDW  131 (372)
T ss_dssp             CEEEEEEET-TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEEC-TTSSEEEEEETTSSEEEEEEETTTTE
T ss_pred             cccEEEEeC-CCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEEC-CCCCEEEEEeCCCEEEEEEecCCCcc
Confidence            599999999 9999999999999999999999877766656899999999998 68899999999999999999886531


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEEC------------------CCCcEEEEEccccCCCe
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDI------------------NSGRRLQVFADMHKEHI  596 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl------------------~s~~~v~~l~~~h~~~V  596 (721)
                      ..     .......|...|.+++|+|++..+++++.||.|++||+                  .+++.+..+.+ |...|
T Consensus       132 ~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v  205 (372)
T 1k8k_C          132 WV-----CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS-SCGWV  205 (372)
T ss_dssp             EE-----EEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC-CSSCE
T ss_pred             ee-----eeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCC-CCCeE
Confidence            00     00111235678999999999999999999999999995                  46788888886 99999


Q ss_pred             EEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC-------
Q 004969          597 NVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG-------  668 (721)
Q Consensus       597 ~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g-------  668 (721)
                      .+++|+|++ .++++++.|+.|++||+++++.  +..+..+...+ +++|+|++.++++| .|+.|++|+++.       
T Consensus       206 ~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~  281 (372)
T 1k8k_C          206 HGVCFSANG-SRVAWVSHDSTVCLADADKKMA--VATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSF  281 (372)
T ss_dssp             EEEEECSSS-SEEEEEETTTEEEEEEGGGTTE--EEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEE
T ss_pred             EEEEECCCC-CEEEEEeCCCEEEEEECCCCce--eEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEE
Confidence            999999999 7999999999999999998865  45555666565 89999999999887 899999999875       


Q ss_pred             -------------------------------------Ccc-cccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          669 -------------------------------------DPF-RDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       669 -------------------------------------~~l-~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                                                           ..+ ..|...|.+++|+|...   ....+|+||+..
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g---~~~~~l~s~~~D  351 (372)
T 1k8k_C          282 GGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGK---AKCSQFCTTGMD  351 (372)
T ss_dssp             CCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTT---TSCSEEEEEETT
T ss_pred             eeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCC---cceeeEEEecCC
Confidence                                                 223 37788999999774430   011588888876

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.94  E-value=7e-26  Score=247.45  Aligned_cols=223  Identities=16%  Similarity=0.204  Sum_probs=184.7

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCC-------eEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEE
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENE-------NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYD  527 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg-------~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWD  527 (721)
                      .|++++|+|.++.+|++|+.||+|+|||+.++       +.+..+.  +|...|.+++|+|....+|++|+.||+|++||
T Consensus        83 ~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd  160 (402)
T 2aq5_A           83 PVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE--GHTKRVGIVAWHPTAQNVLLSAGCDNVILVWD  160 (402)
T ss_dssp             CEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEE--CCSSCEEEEEECSSBTTEEEEEETTSCEEEEE
T ss_pred             CEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEec--CCCCeEEEEEECcCCCCEEEEEcCCCEEEEEE
Confidence            69999999988899999999999999999987       4566666  89999999999954447999999999999999


Q ss_pred             cCCCCCcccccccCcceeEe---ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEE-ccccCCC-eEEEEEc
Q 004969          528 IRHMPPSIRGMHYGAGTVTF---DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVF-ADMHKEH-INVVKFS  602 (721)
Q Consensus       528 i~~~~~~~~~~~~~~~~~~~---~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l-~~~h~~~-V~sI~fs  602 (721)
                      +.+++.          ...+   .|...|.+++|+|++..+++++.||.|++||+++++.+..+ .+ |.+. +.++.|+
T Consensus       161 ~~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~  229 (402)
T 2aq5_A          161 VGTGAA----------VLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRP-HEGTRPVHAVFV  229 (402)
T ss_dssp             TTTTEE----------EEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECS-SCSSSCCEEEEC
T ss_pred             CCCCCc----------cEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccC-CCCCcceEEEEc
Confidence            998543          2222   35678999999999999999999999999999999999998 54 7765 8999999


Q ss_pred             CCCCcEEEEE---ECCCcEEEEECCCCCc-eeEEEecCCCCeEEEEEecCCCEEEE-EeCCCcEEEEEcCCCc-----cc
Q 004969          603 NHSPSIFATS---SFDQDVKLWDLRQKPI-QPCYTASSSKGNVMVCFSPDDHYLLG-KGSGTSMFVQSLRGDP-----FR  672 (721)
Q Consensus       603 Pdg~~lLaSg---s~DgtIrIWDlrs~~~-~~~~~~~~~~~~vsl~fSpdg~~Las-gs~Dg~I~VWDl~g~~-----l~  672 (721)
                      |++ .++++|   +.|+.|++||+++... .............+++|+|++++|++ |+.||.|++||+....     +.
T Consensus       230 ~~~-~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~  308 (402)
T 2aq5_A          230 SEG-KILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLS  308 (402)
T ss_dssp             STT-EEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEE
T ss_pred             CCC-cEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeec
Confidence            998 789888   7899999999998653 33444445555669999999999975 5579999999998332     33


Q ss_pred             cc--ccCeEEEEECCCCCccc
Q 004969          673 DF--NMSILAAYTRPSSKSEI  691 (721)
Q Consensus       673 ~~--~~~V~~v~fsP~~~~~~  691 (721)
                      .+  ...+.+++|+|++...+
T Consensus       309 ~~~~~~~v~~~~~sp~~~~~~  329 (402)
T 2aq5_A          309 MFSSKESQRGMGYMPKRGLEV  329 (402)
T ss_dssp             EECCSSCCSEEEECCGGGSCG
T ss_pred             ccccCCcccceEEecccccce
Confidence            33  47899999999985443

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.94  E-value=4.3e-25  Score=239.06  Aligned_cols=232  Identities=13%  Similarity=0.149  Sum_probs=193.4

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|++++|+| ++++|++|+.||.|++|| .+++.+..+.  +|...|.+++|+ +++.+|++++.||.|++||+.+++..
T Consensus       110 ~v~~~~~s~-~~~~l~~~~~dg~i~i~~-~~~~~~~~~~--~~~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~  184 (425)
T 1r5m_A          110 QVTCLAWSH-DGNSIVTGVENGELRLWN-KTGALLNVLN--FHRAPIVSVKWN-KDGTHIISMDVENVTILWNVISGTVM  184 (425)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSCEEEEE-TTSCEEEEEC--CCCSCEEEEEEC-TTSSEEEEEETTCCEEEEETTTTEEE
T ss_pred             ceEEEEEcC-CCCEEEEEeCCCeEEEEe-CCCCeeeecc--CCCccEEEEEEC-CCCCEEEEEecCCeEEEEECCCCcEE
Confidence            699999999 999999999999999999 5677877776  889999999998 68899999999999999999875432


Q ss_pred             cccccc----------------------------------------------CcceeEe-ccCCCeEEEEEecCCCEEEE
Q 004969          535 IRGMHY----------------------------------------------GAGTVTF-DEFDQLTSVHVNSMDELFLA  567 (721)
Q Consensus       535 ~~~~~~----------------------------------------------~~~~~~~-~~~~~V~sv~~sp~~~~lls  567 (721)
                      ......                                              ......+ .|...|.+++|+|++..+++
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  264 (425)
T 1r5m_A          185 QHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLS  264 (425)
T ss_dssp             EEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEE
T ss_pred             EEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEE
Confidence            110000                                              0001111 35677999999999999999


Q ss_pred             EeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEe
Q 004969          568 SGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFS  646 (721)
Q Consensus       568 ~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fS  646 (721)
                      ++.|+.|++||+++++.+..+.+ |...|.+++|+|++  .+++++.|+.|++||+++++.  ...+..+...+ +++|+
T Consensus       265 ~~~d~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~s  339 (425)
T 1r5m_A          265 ASDDGTLRIWHGGNGNSQNCFYG-HSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTL--LALSIVDGVPIFAGRIS  339 (425)
T ss_dssp             EETTSCEEEECSSSBSCSEEECC-CSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTEE--EEEEECTTCCEEEEEEC
T ss_pred             EcCCCEEEEEECCCCccceEecC-CCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCcE--eEecccCCccEEEEEEc
Confidence            99999999999999999999986 99999999999988  899999999999999998754  45555666666 89999


Q ss_pred             cCCCEEEEEeCCCcEEEEEcC-CC--------------------c---cccccc--CeEEEEECCCCCcccccccEEEEe
Q 004969          647 PDDHYLLGKGSGTSMFVQSLR-GD--------------------P---FRDFNM--SILAAYTRPSSKSEIVKVNLLAST  700 (721)
Q Consensus       647 pdg~~Lasgs~Dg~I~VWDl~-g~--------------------~---l~~~~~--~V~~v~fsP~~~~~~v~v~lLASg  700 (721)
                      |++++|++++.||.|++||++ +.                    .   +..+..  .|.++.|+|++       ..|++|
T Consensus       340 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-------~~l~~~  412 (425)
T 1r5m_A          340 QDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAG-------NKISVA  412 (425)
T ss_dssp             TTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTS-------SEEEEE
T ss_pred             CCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCC-------ceEEEE
Confidence            999999999999999999987 22                    2   233434  89999999999       889888


Q ss_pred             cCC
Q 004969          701 DHC  703 (721)
Q Consensus       701 s~~  703 (721)
                      +..
T Consensus       413 ~~d  415 (425)
T 1r5m_A          413 YSL  415 (425)
T ss_dssp             ESS
T ss_pred             ecC
Confidence            866

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.94  E-value=9.2e-25  Score=227.99  Aligned_cols=235  Identities=11%  Similarity=0.231  Sum_probs=187.0

Q ss_pred             cCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969          454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~  533 (721)
                      ++..+|+||+ + ++||+|. |++|+|||+.+|+.+..+..++|...|++++|+ +++++|++|+.||+|++||+++++.
T Consensus        26 ~y~~~l~WS~-~-~~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~-~~~~~l~sgs~Dg~v~iw~~~~~~~  101 (318)
T 4ggc_A           26 YYLNLVDWSS-G-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWI-KEGNYLAVGTSSAEVQLWDVQQQKR  101 (318)
T ss_dssp             TTCBCEEECT-T-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             ccceEEEECC-C-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEEC-CCCCEEEEEECCCcEEEeecCCcee
Confidence            3567899999 5 4777765 999999999999999999888899999999998 7899999999999999999998654


Q ss_pred             cccccccC--------------------------------cc-eeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 004969          534 SIRGMHYG--------------------------------AG-TVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDIN  580 (721)
Q Consensus       534 ~~~~~~~~--------------------------------~~-~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~  580 (721)
                      .. ...++                                .. .....|...+..+.+++.+..+++++.|+.|++||++
T Consensus       102 ~~-~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~  180 (318)
T 4ggc_A          102 LR-NMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA  180 (318)
T ss_dssp             EE-EEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS
T ss_pred             EE-EecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECC
Confidence            21 11111                                00 1122356678999999999999999999999999999


Q ss_pred             CCcE----EEEEccccCCCeEEEEEcCCCCcEEE--EEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEE
Q 004969          581 SGRR----LQVFADMHKEHINVVKFSNHSPSIFA--TSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLG  654 (721)
Q Consensus       581 s~~~----v~~l~~~h~~~V~sI~fsPdg~~lLa--Sgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Las  654 (721)
                      +++.    ...... |.+.|.+++++|+++..+.  +++.+++|++||.+....  ............+.|+|++..+++
T Consensus       181 ~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~  257 (318)
T 4ggc_A          181 PGEGGWVPLQTFTQ-HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC--LSAVDAHSQVCSILWSPHYKELIS  257 (318)
T ss_dssp             CBTTBSCCSEEECC-CCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE--EEEEECSSCEEEEEEETTTTEEEE
T ss_pred             CCcccccceeeecc-cCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccc--cccccceeeeeeeeecccccceEE
Confidence            8653    334443 8889999999999866654  566789999999998754  333344445558999999999887


Q ss_pred             Ee--CCCcEEEEEcC-CCc---ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          655 KG--SGTSMFVQSLR-GDP---FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       655 gs--~Dg~I~VWDl~-g~~---l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      ++  .|+.|++||++ +..   +.+|...|.+++|+|++       .+|||||..
T Consensus       258 ~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg-------~~l~S~s~D  305 (318)
T 4ggc_A          258 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDG-------ATVASAAAD  305 (318)
T ss_dssp             EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-------SCEEEEETT
T ss_pred             EEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC-------CEEEEEecC
Confidence            65  78999999998 333   56778899999999999       899999976

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.94  E-value=1.1e-25  Score=249.28  Aligned_cols=236  Identities=21%  Similarity=0.321  Sum_probs=189.7

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCC----------CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEE
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHEN----------ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLK  524 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~t----------g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVr  524 (721)
                      .|++++|+|+++.++++|+.||.|++|++.+          ......+.  +|...|++++|+|....+|++|+.||+|+
T Consensus       130 ~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~~dg~i~  207 (430)
T 2xyi_A          130 EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLR--GHQKEGYGLSWNPNLNGYLLSASDDHTIC  207 (430)
T ss_dssp             CCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEE--CCSSCCCCEEECTTSTTEEEEECTTSCEE
T ss_pred             cEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEec--CCCCCeEEEEeCCCCCCeEEEEeCCCeEE
Confidence            4899999995478999999999999999976          45566666  88999999999954444999999999999


Q ss_pred             EEEcCCCCCcccccccCcceeEeccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCC---cEEEEEccccCCCeEEEE
Q 004969          525 LYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNS-MDELFLASGYSKNIALYDINSG---RRLQVFADMHKEHINVVK  600 (721)
Q Consensus       525 IWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp-~~~~lls~g~Dg~IrlWDl~s~---~~v~~l~~~h~~~V~sI~  600 (721)
                      +||+..+........  .......|...|.+++|+| .+..+++++.||.|++||++++   +.+..+.. |...|++++
T Consensus       208 vwd~~~~~~~~~~~~--~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~v~~i~  284 (430)
T 2xyi_A          208 LWDINATPKEHRVID--AKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA-HTAEVNCLS  284 (430)
T ss_dssp             EEETTSCCBGGGEEE--CSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC-CSSCEEEEE
T ss_pred             EEeCCCCCCCCceec--cceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec-CCCCeEEEE
Confidence            999988543111100  0111224667899999999 5678888889999999999987   57777775 999999999


Q ss_pred             EcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCC-EEEEEeCCCcEEEEEcCC----------
Q 004969          601 FSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDH-YLLGKGSGTSMFVQSLRG----------  668 (721)
Q Consensus       601 fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~-~Lasgs~Dg~I~VWDl~g----------  668 (721)
                      |+|+++.++++|+.||+|++||+++.. .++..+..|...+ +++|+|+++ +|++++.||.|++||+..          
T Consensus       285 ~~p~~~~~l~tg~~dg~v~vwd~~~~~-~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  363 (430)
T 2xyi_A          285 FNPYSEFILATGSADKTVALWDLRNLK-LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA  363 (430)
T ss_dssp             ECSSCTTEEEEEETTSEEEEEETTCTT-SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHH
T ss_pred             eCCCCCCEEEEEeCCCeEEEEeCCCCC-CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcccc
Confidence            999996789999999999999999843 3355666676666 899999995 689999999999999973          


Q ss_pred             -----Cc---ccccccCeEEEEECCCCCccccccc-EEEEecCC
Q 004969          669 -----DP---FRDFNMSILAAYTRPSSKSEIVKVN-LLASTDHC  703 (721)
Q Consensus       669 -----~~---l~~~~~~V~~v~fsP~~~~~~v~v~-lLASgs~~  703 (721)
                           ..   +.+|...|..++|+|++       + ++++++..
T Consensus       364 ~~~~~~~~~~~~~h~~~v~~~~~~p~~-------~~~l~s~s~d  400 (430)
T 2xyi_A          364 EDGPPELLFIHGGHTAKISDFSWNPNE-------PWIICSVSED  400 (430)
T ss_dssp             HHCCTTEEEECCCCSSCEEEEEECSSS-------TTEEEEEETT
T ss_pred             ccCCcceEEEcCCCCCCceEEEECCCC-------CCEEEEEECC
Confidence                 22   23456689999999999       6 88888866

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.94  E-value=4.2e-25  Score=240.92  Aligned_cols=225  Identities=13%  Similarity=0.174  Sum_probs=181.6

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI  535 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~  535 (721)
                      +....|+| +++++++|+.||.|++||+.+++....+.  +|...|++++|+ +++++|++|+.||+|++||+.+++.. 
T Consensus       100 ~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~~~~~-~~~~~l~s~s~d~~i~iwd~~~~~~~-  174 (420)
T 3vl1_A          100 TAVDTAKL-QMRRFILGTTEGDIKVLDSNFNLQREIDQ--AHVSEITKLKFF-PSGEALISSSQDMQLKIWSVKDGSNP-  174 (420)
T ss_dssp             EEEEEECS-SSCEEEEEETTSCEEEECTTSCEEEEETT--SSSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCCC-
T ss_pred             eEEEEEec-CCCEEEEEECCCCEEEEeCCCcceeeecc--cccCccEEEEEC-CCCCEEEEEeCCCeEEEEeCCCCcCc-
Confidence            44456788 99999999999999999999998877765  899999999998 68899999999999999999986542 


Q ss_pred             cccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcc--ccCCCeEEEE-------------
Q 004969          536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD--MHKEHINVVK-------------  600 (721)
Q Consensus       536 ~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~--~h~~~V~sI~-------------  600 (721)
                              .....|...|.+++|+|++..+++++.|+.|++||+++++.+..+..  .|...+.+++             
T Consensus       175 --------~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  246 (420)
T 3vl1_A          175 --------RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEIS  246 (420)
T ss_dssp             --------EEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGC
T ss_pred             --------eEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecc
Confidence                    11224667899999999999999999999999999999999998874  2444555555             


Q ss_pred             --------EcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCC-EEEEEeCCCcEEEEEcCC--
Q 004969          601 --------FSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDH-YLLGKGSGTSMFVQSLRG--  668 (721)
Q Consensus       601 --------fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~-~Lasgs~Dg~I~VWDl~g--  668 (721)
                              |+|++ .++++|+.||.|++||++++...... ...|...+ +++|+|++. +|++|+.||.|++||++.  
T Consensus       247 ~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~  324 (420)
T 3vl1_A          247 TSKKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQTIQL-PSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE  324 (420)
T ss_dssp             CCCCCTTCSSCTT-EEEEEEETTSCEEEEETTTCCEEEEE-CCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT
T ss_pred             cCcccceEEcCCC-CEEEEEcCCCeEEEEECCCCceeEEc-ccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc
Confidence                    56777 79999999999999999987543222 23455555 999999999 999999999999999983  


Q ss_pred             Cc---ccc-cccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          669 DP---FRD-FNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       669 ~~---l~~-~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      .+   +.. +...+..+.+ |++       .+|++|+..
T Consensus       325 ~~~~~~~~~~~~~v~~~~~-~~~-------~~l~s~~~d  355 (420)
T 3vl1_A          325 CPVGEFLINEGTPINNVYF-AAG-------ALFVSSGFD  355 (420)
T ss_dssp             SCSEEEEESTTSCEEEEEE-ETT-------EEEEEETTT
T ss_pred             CchhhhhccCCCCceEEEe-CCC-------CEEEEecCC
Confidence            22   233 3456777755 566       788888765

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.94  E-value=3.1e-26  Score=261.84  Aligned_cols=228  Identities=12%  Similarity=0.078  Sum_probs=167.0

Q ss_pred             CCCEEEEEECCCeEEEEECCCCeEE----EEeecCCCCCCeEEEEEeeC-----CCCEEEEEeCCCeEEEEEcCCCCCcc
Q 004969          465 ISCLMVFGTLDGEIVVVNHENENIV----SYIPSFGAMNSVLGLCWLKK-----YPSKLIAGSDNGSLKLYDIRHMPPSI  535 (721)
Q Consensus       465 dg~~LasGs~DG~I~IWdl~tg~~i----~~l~~~~H~~~V~sl~fsp~-----d~~~LaSgs~DGtVrIWDi~~~~~~~  535 (721)
                      ++..+++|+.||+|+||++.+++..    ..+.  +|.+.|.+++|+|.     ++.+|++|+.||+|++||+.++....
T Consensus       172 ~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~--~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~  249 (524)
T 2j04_B          172 HLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIV--HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDV  249 (524)
T ss_dssp             ----------CEEEEEEEEETTTCCEEEEEEEE--ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSS
T ss_pred             hhhhhccCCCCceEEEEEccCCCCCceEEEEEE--ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccc
Confidence            3445566778999999999877642    2233  67789999999964     35799999999999999998764310


Q ss_pred             c-ccccCcceeEe-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC-cEEEEEccccCCCeEEE--EEcCCCCcEEE
Q 004969          536 R-GMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSG-RRLQVFADMHKEHINVV--KFSNHSPSIFA  610 (721)
Q Consensus       536 ~-~~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~-~~v~~l~~~h~~~V~sI--~fsPdg~~lLa  610 (721)
                      . ..........+ .|...|++++|+++ ..+++|+.||+|++||++++ .+...+.+ |...|.+|  .|+|+++.+|+
T Consensus       250 ~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~-H~~~V~sv~~~~s~~g~~~la  327 (524)
T 2j04_B          250 HVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQV-HDSYILSVSTAYSDFEDTVVS  327 (524)
T ss_dssp             SEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEEC-SSSCEEEEEEECCTTSCCEEE
T ss_pred             ccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeec-ccccEEEEEEEcCCCCCeEEE
Confidence            0 00000111122 35678999999875 58999999999999999976 44556776 99999999  56777546999


Q ss_pred             EEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC-C---cccccccCeEEEEECC
Q 004969          611 TSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG-D---PFRDFNMSILAAYTRP  685 (721)
Q Consensus       611 Sgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g-~---~l~~~~~~V~~v~fsP  685 (721)
                      ||+.|++|+|||++++++............+ +++|+|+++.+++++.|++|++||++. .   .+.+|...|.+++|+|
T Consensus       328 S~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp  407 (524)
T 2j04_B          328 TVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSR  407 (524)
T ss_dssp             EEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCS
T ss_pred             EeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCC
Confidence            9999999999999987554333322221223 799999999999999999999999983 2   3567888999999999


Q ss_pred             CCCcccccccEEEEecCC
Q 004969          686 SSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       686 ~~~~~~v~v~lLASgs~~  703 (721)
                      ++       +.||+|+..
T Consensus       408 ~g-------~~l~Sgs~D  418 (524)
T 2j04_B          408 LH-------PMVLAGSAD  418 (524)
T ss_dssp             SC-------CBCEEEETT
T ss_pred             CC-------CeEEEEECC
Confidence            99       888998876

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.94  E-value=5.5e-25  Score=260.99  Aligned_cols=226  Identities=19%  Similarity=0.301  Sum_probs=194.0

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|++++|+| ++.++++|+.||.|+|||+.+++.+..+.  +|..+|++++|+ +++++|++|+.||.|++||+.+++. 
T Consensus        15 ~v~~i~~sp-~~~~la~~~~~g~v~iwd~~~~~~~~~~~--~~~~~v~~~~~s-~~~~~l~~~~~dg~i~vw~~~~~~~-   89 (814)
T 3mkq_A           15 RVKGIDFHP-TEPWVLTTLYSGRVEIWNYETQVEVRSIQ--VTETPVRAGKFI-ARKNWIIVGSDDFRIRVFNYNTGEK-   89 (814)
T ss_dssp             CEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEE--CCSSCEEEEEEE-GGGTEEEEEETTSEEEEEETTTCCE-
T ss_pred             ceEEEEECC-CCCEEEEEeCCCEEEEEECCCCceEEEEe--cCCCcEEEEEEe-CCCCEEEEEeCCCeEEEEECCCCcE-
Confidence            599999999 99999999999999999999999999888  899999999999 6889999999999999999988654 


Q ss_pred             ccccccCcceeEe-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC-cEEEEEccccCCCeEEEEEcC-CCCcEEEE
Q 004969          535 IRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSG-RRLQVFADMHKEHINVVKFSN-HSPSIFAT  611 (721)
Q Consensus       535 ~~~~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~-~~v~~l~~~h~~~V~sI~fsP-dg~~lLaS  611 (721)
                               ...+ .|...|.+++|+|++..+++++.||.|++||+.++ .....+.+ |...|.+++|+| ++ ..+++
T Consensus        90 ---------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~-~~l~~  158 (814)
T 3mkq_A           90 ---------VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG-HEHFVMCVAFNPKDP-STFAS  158 (814)
T ss_dssp             ---------EEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEEC-CSSCEEEEEEETTEE-EEEEE
T ss_pred             ---------EEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcC-CCCcEEEEEEEcCCC-CEEEE
Confidence                     2222 36678999999999999999999999999999987 66677776 999999999999 66 89999


Q ss_pred             EECCCcEEEEECCCCCceeEEEecCCCCeEEEEEec--CCCEEEEEeCCCcEEEEEcCCC-c---ccccccCeEEEEECC
Q 004969          612 SSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSP--DDHYLLGKGSGTSMFVQSLRGD-P---FRDFNMSILAAYTRP  685 (721)
Q Consensus       612 gs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSp--dg~~Lasgs~Dg~I~VWDl~g~-~---l~~~~~~V~~v~fsP  685 (721)
                      ++.||+|++||++++................++|+|  ++.++++++.||.|++||++.. .   +..|...|.++.|+|
T Consensus       159 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~  238 (814)
T 3mkq_A          159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP  238 (814)
T ss_dssp             EETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECS
T ss_pred             EeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC
Confidence            999999999999887554333322223444899999  9999999999999999998733 2   445677899999999


Q ss_pred             CCCcccccccEEEEecCC
Q 004969          686 SSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       686 ~~~~~~v~v~lLASgs~~  703 (721)
                      ++       +++++|+..
T Consensus       239 ~~-------~~l~~~~~d  249 (814)
T 3mkq_A          239 TL-------PIIISGSED  249 (814)
T ss_dssp             SS-------SEEEEEETT
T ss_pred             CC-------CEEEEEeCC
Confidence            99       888888865

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.94  E-value=1.8e-25  Score=236.92  Aligned_cols=233  Identities=15%  Similarity=0.196  Sum_probs=186.6

Q ss_pred             CeEEEEEeCCC--CCEEEEEECCCeEEEEECCCCe-EEEEeecCCCCCCeEEEEEee-----CCCCEEEEEeCCCeEEEE
Q 004969          455 RPRQFEYHPSI--SCLMVFGTLDGEIVVVNHENEN-IVSYIPSFGAMNSVLGLCWLK-----KYPSKLIAGSDNGSLKLY  526 (721)
Q Consensus       455 ~V~~lafsP~d--g~~LasGs~DG~I~IWdl~tg~-~i~~l~~~~H~~~V~sl~fsp-----~d~~~LaSgs~DGtVrIW  526 (721)
                      .|++++|+|..  +.++++|+.||.|++||+.+++ .+..+.  +|...|.+++|.+     +++++|++|+.||+|++|
T Consensus        67 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vw  144 (357)
T 3i2n_A           67 PIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVK--GHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVW  144 (357)
T ss_dssp             CEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEEC--CCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEE
T ss_pred             cEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEE--ecccceEEEeeccccccCCCccEEEEEeCCCeEEEE
Confidence            59999999942  7999999999999999999887 777776  8999999997753     578899999999999999


Q ss_pred             EcCCCCCcccccccCcceeEeccCCCeEEEE----EecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEc
Q 004969          527 DIRHMPPSIRGMHYGAGTVTFDEFDQLTSVH----VNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFS  602 (721)
Q Consensus       527 Di~~~~~~~~~~~~~~~~~~~~~~~~V~sv~----~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fs  602 (721)
                      |+.++.........+..    .....+.+++    |++++..+++++.||.|++||+++++......  |...|.+++|+
T Consensus       145 d~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~v~~~~~~  218 (357)
T 3i2n_A          145 DPRQKDDPVANMEPVQG----ENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETN--IKNGVCSLEFD  218 (357)
T ss_dssp             CTTSCSSCSEEECCCTT----SCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEES
T ss_pred             eCCCCCCcceeccccCC----CCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecC--CCCceEEEEcC
Confidence            99987632222221111    0123678888    77899999999999999999999998866644  89999999999


Q ss_pred             C---CCCcEEEEEECCCcEEEEECCCCCceeEE---EecCCCCeE-EEEEecCCC-EEEEEeCCCcEEEEEcCCC-----
Q 004969          603 N---HSPSIFATSSFDQDVKLWDLRQKPIQPCY---TASSSKGNV-MVCFSPDDH-YLLGKGSGTSMFVQSLRGD-----  669 (721)
Q Consensus       603 P---dg~~lLaSgs~DgtIrIWDlrs~~~~~~~---~~~~~~~~v-sl~fSpdg~-~Lasgs~Dg~I~VWDl~g~-----  669 (721)
                      |   ++ ..+++|+.||.|++||++++.....+   ...+|...+ +++|+|+++ ++++++.||.|++||++..     
T Consensus       219 ~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  297 (357)
T 3i2n_A          219 RKDISM-NKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSK  297 (357)
T ss_dssp             CSSSSC-CEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--
T ss_pred             CCCCCC-CEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccccc
Confidence            9   77 79999999999999999876443322   233666666 899999999 8999999999999998621     


Q ss_pred             ------------------cccccccCeEEEEECCCCCcccccccEEE-EecCC
Q 004969          670 ------------------PFRDFNMSILAAYTRPSSKSEIVKVNLLA-STDHC  703 (721)
Q Consensus       670 ------------------~l~~~~~~V~~v~fsP~~~~~~v~v~lLA-Sgs~~  703 (721)
                                        .+..|...|.+++|+|++       ..|+ +|+..
T Consensus       298 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-------~~l~~s~~~d  343 (357)
T 3i2n_A          298 KDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDK-------RGLCVCSSFD  343 (357)
T ss_dssp             CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSS-------TTEEEEEETT
T ss_pred             ccCCCCccccccccceeeccccCCCCeeEEEEcCCC-------CeEEEEecCC
Confidence                              134467789999999999       7776 67755

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.94  E-value=2.9e-24  Score=236.73  Aligned_cols=225  Identities=13%  Similarity=0.236  Sum_probs=192.2

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|++|+|+| ++++|++|+.||+|+|||+.+++.+..+.  +|...|.+++|+   +..+++|+.|+.+++||.......
T Consensus       149 ~V~sv~fsp-dg~~lasgs~Dg~v~iWd~~~~~~~~~~~--~h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~~~  222 (420)
T 4gga_A          149 YISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKRLRNMT--SHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHH  222 (420)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCE
T ss_pred             cEEEEEECC-CCCEEEEEECCCeEEEEEcCCCcEEEEEe--CCCCceEEEeeC---CCEEEEEeCCCceeEeeeccccee
Confidence            599999999 99999999999999999999999998887  899999999885   679999999999999999875542


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc----EEEEEccccCCCeEEEEEcCCCCcEEE
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR----RLQVFADMHKEHINVVKFSNHSPSIFA  610 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~----~v~~l~~~h~~~V~sI~fsPdg~~lLa  610 (721)
                      +..        ...|...+..+.+++++..+++++.|+.+++||..+++    .+..... |...|.+++|+|.++.+++
T Consensus       223 ~~~--------~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~-~~~~V~~~~~~p~~~~~la  293 (420)
T 4gga_A          223 VAT--------LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ-HQGAVKAVAWCPWQSNVLA  293 (420)
T ss_dssp             EEE--------EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECC-CSSCEEEEEECTTCTTEEE
T ss_pred             eEE--------ecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecc-cCCceeeeeeCCCcccEEE
Confidence            221        22455678999999999999999999999999998765    3455555 9999999999999878887


Q ss_pred             EE--ECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEe--CCCcEEEEEcC-CCc---ccccccCeEEEE
Q 004969          611 TS--SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKG--SGTSMFVQSLR-GDP---FRDFNMSILAAY  682 (721)
Q Consensus       611 Sg--s~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs--~Dg~I~VWDl~-g~~---l~~~~~~V~~v~  682 (721)
                      ++  +.|++|++||++++.+  ...+..+...+++.|+|++..+++++  .|+.|+|||++ +.+   +.+|...|.+++
T Consensus       294 ~~~gs~D~~I~iwd~~t~~~--~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~  371 (420)
T 4gga_A          294 TGGGTSDRHIRIWNVCSGAC--LSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLT  371 (420)
T ss_dssp             EEECTTTCEEEEEETTTTEE--EEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred             EEeecCCCEEEEEeCCcccc--ceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence            75  4799999999999854  55556677777999999999998875  68999999997 333   567788999999


Q ss_pred             ECCCCCcccccccEEEEecCC
Q 004969          683 TRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       683 fsP~~~~~~v~v~lLASgs~~  703 (721)
                      |+|++       ..||||+..
T Consensus       372 ~spdg-------~~l~S~s~D  385 (420)
T 4gga_A          372 MSPDG-------ATVASAAAD  385 (420)
T ss_dssp             ECTTS-------SCEEEEETT
T ss_pred             EcCCC-------CEEEEEecC
Confidence            99999       899999976

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.94  E-value=1.1e-25  Score=247.33  Aligned_cols=232  Identities=16%  Similarity=0.200  Sum_probs=179.7

Q ss_pred             CeEEEEEeCCCC--CEEEEEECCCeEEEEECCCCeEEE---------------------------------------Eee
Q 004969          455 RPRQFEYHPSIS--CLMVFGTLDGEIVVVNHENENIVS---------------------------------------YIP  493 (721)
Q Consensus       455 ~V~~lafsP~dg--~~LasGs~DG~I~IWdl~tg~~i~---------------------------------------~l~  493 (721)
                      .|++++|+| ++  .++++|+.||+|++||+.++....                                       .+ 
T Consensus        95 ~V~~l~~~~-~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  172 (447)
T 3dw8_B           95 KINKIRWLP-QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIF-  172 (447)
T ss_dssp             CCCEEEECC-CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEE-
T ss_pred             ceEEEEEcC-CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEe-
Confidence            589999999 66  799999999999999987644321                                       11 


Q ss_pred             cCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCC-CEEEEEeCCC
Q 004969          494 SFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD-ELFLASGYSK  572 (721)
Q Consensus       494 ~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~-~~lls~g~Dg  572 (721)
                      ..+|...|++++|+ +++++|++| .||+|++||++............. .....|...|.+++|+|++ ..+++++.||
T Consensus       173 ~~~h~~~v~~~~~~-~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg  249 (447)
T 3dw8_B          173 ANAHTYHINSISIN-SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKP-ANMEELTEVITAAEFHPNSCNTFVYSSSKG  249 (447)
T ss_dssp             CSCCSSCCCEEEEC-TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCC-SSGGGCCCCEEEEEECSSCTTEEEEEETTS
T ss_pred             ccCCCcceEEEEEc-CCCCEEEEe-CCCeEEEEECCCCCceeeeeeccc-ccccccCcceEEEEECCCCCcEEEEEeCCC
Confidence            24799999999999 688999998 799999999985332111110000 0112456779999999998 8999999999


Q ss_pred             cEEEEECCCCcE----EEEEccccCC------------CeEEEEEcCCCCcEEEEEECCCcEEEEECCC-CCceeEEEec
Q 004969          573 NIALYDINSGRR----LQVFADMHKE------------HINVVKFSNHSPSIFATSSFDQDVKLWDLRQ-KPIQPCYTAS  635 (721)
Q Consensus       573 ~IrlWDl~s~~~----v~~l~~~h~~------------~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs-~~~~~~~~~~  635 (721)
                      .|++||+++++.    +..+.+ |..            .|.+++|+|+| .++++++. +.|++||+++ ++..  ..+.
T Consensus       250 ~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~-~~v~iwd~~~~~~~~--~~~~  324 (447)
T 3dw8_B          250 TIRLCDMRASALCDRHSKLFEE-PEDPSNRSFFSEIISSISDVKFSHSG-RYMMTRDY-LSVKVWDLNMENRPV--ETYQ  324 (447)
T ss_dssp             CEEEEETTTCSSSCTTCEEECC-C-----CCHHHHHTTCEEEEEECTTS-SEEEEEES-SEEEEEETTCCSSCS--CCEE
T ss_pred             eEEEEECcCCccccceeeEecc-CCCccccccccccCceEEEEEECCCC-CEEEEeeC-CeEEEEeCCCCcccc--ceee
Confidence            999999999887    778876 765            89999999999 79999998 9999999997 5443  3334


Q ss_pred             CCCCeE----------------EEEEecCCCEEEEEeCCCcEEEEEcCCCcc-c--------------------------
Q 004969          636 SSKGNV----------------MVCFSPDDHYLLGKGSGTSMFVQSLRGDPF-R--------------------------  672 (721)
Q Consensus       636 ~~~~~v----------------sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l-~--------------------------  672 (721)
                      +|....                .++|+|+|++|++|+.||.|++||+..... .                          
T Consensus       325 ~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (447)
T 3dw8_B          325 VHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRK  404 (447)
T ss_dssp             SCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCC
T ss_pred             ccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcc
Confidence            444322                389999999999999999999999873321 1                          


Q ss_pred             ---------ccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          673 ---------DFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       673 ---------~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                               .+...|..++|||++       ++||+++..
T Consensus       405 ~~~~~~~~~~~~~~i~~~~~~p~~-------~~la~~~~~  437 (447)
T 3dw8_B          405 KDEISVDSLDFNKKILHTAWHPKE-------NIIAVATTN  437 (447)
T ss_dssp             TTCEEGGGCCTTSCCCEEEECSSS-------SEEEEECSS
T ss_pred             cccccccccccCCceeEEEECCCC-------CEEEEEecc
Confidence                     234568899999999       999988764

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.94  E-value=2e-24  Score=245.92  Aligned_cols=221  Identities=18%  Similarity=0.264  Sum_probs=188.9

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|++++|+| ++.++++++.||+|++||.... .+..+.  +|...|.+++|+ +++.++++|+.||+|++||... +. 
T Consensus       305 ~v~~~~~~~-~~~~l~t~~~d~~i~~w~~~~~-~~~~~~--~~~~~v~~~~~s-~~g~~l~~~~~dg~v~~~~~~~-~~-  377 (577)
T 2ymu_A          305 SVWGVAFSP-DGQTIASASDDKTVKLWNRNGQ-HLQTLT--GHSSSVWGVAFS-PDGQTIASASDDKTVKLWNRNG-QL-  377 (577)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSCEEEEETTSC-EEEEEC--CCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTC-CE-
T ss_pred             CeEEEEECC-CCCEEEEEeCCCeEEEEeCCCC-eeEEEe--CCCCCEEEEEEC-CCCCEEEEEeCCCEEEEEcCCC-CE-
Confidence            589999999 9999999999999999998754 445555  889999999998 7899999999999999999654 21 


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF  614 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~  614 (721)
                      +        .....|...|.+++|+|++..+++++.|+.|++||. +++.+..+.+ |...|.+++|+|++ .++++++.
T Consensus       378 ~--------~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~-~~~~v~~~~~s~d~-~~l~~~~~  446 (577)
T 2ymu_A          378 L--------QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG-HSSSVWGVAFSPDD-QTIASASD  446 (577)
T ss_dssp             E--------EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEEC-CSSCEEEEEECTTS-SEEEEEET
T ss_pred             E--------EEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecC-CCCCeEEEEECCCC-CEEEEEcC
Confidence            1        112245678999999999999999999999999995 5778888886 99999999999999 79999999


Q ss_pred             CCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCc---ccccccCeEEEEECCCCCcc
Q 004969          615 DQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDP---FRDFNMSILAAYTRPSSKSE  690 (721)
Q Consensus       615 DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~---l~~~~~~V~~v~fsP~~~~~  690 (721)
                      |++|++||....   ....+.+|...+ +++|+|++++|++++.|+.|++||..++.   +..|...|.+++|+|++   
T Consensus       447 d~~v~~w~~~~~---~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg---  520 (577)
T 2ymu_A          447 DKTVKLWNRNGQ---LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDG---  520 (577)
T ss_dssp             TSEEEEEETTSC---EEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTS---
T ss_pred             CCEEEEEECCCC---EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCC---
Confidence            999999997542   244566777777 89999999999999999999999988765   45567899999999999   


Q ss_pred             cccccEEEEecCC
Q 004969          691 IVKVNLLASTDHC  703 (721)
Q Consensus       691 ~v~v~lLASgs~~  703 (721)
                          .+||+|+..
T Consensus       521 ----~~l~s~~~d  529 (577)
T 2ymu_A          521 ----QTIASASDD  529 (577)
T ss_dssp             ----SCEEEEETT
T ss_pred             ----CEEEEEECc
Confidence                788888865

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.94  E-value=4.8e-25  Score=232.95  Aligned_cols=222  Identities=12%  Similarity=0.124  Sum_probs=183.1

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe---EEEEeecCCCCCCeEEEEEeeCCCC-EEEEEeCCCeEEEEEc-C
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN---IVSYIPSFGAMNSVLGLCWLKKYPS-KLIAGSDNGSLKLYDI-R  529 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~---~i~~l~~~~H~~~V~sl~fsp~d~~-~LaSgs~DGtVrIWDi-~  529 (721)
                      .|++++|+| ++.++++|+.||.|++|++.++.   ....+.  +|...|++++|+ +++. +|++|+.||.|++||+ .
T Consensus        13 ~v~~~~~s~-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~--~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~~wd~~~   88 (342)
T 1yfq_A           13 YISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL--RYKHPLLCCNFI-DNTDLQIYVGTVQGEILKVDLIG   88 (342)
T ss_dssp             CEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTEEEEEEEE--ECSSCEEEEEEE-ESSSEEEEEEETTSCEEEECSSS
T ss_pred             cEEEEEEcC-CCCEEEEEcCCCeEEEEEeCCCCccccceeee--ecCCceEEEEEC-CCCCcEEEEEcCCCeEEEEEecc
Confidence            599999999 99999999999999999998876   233333  788999999999 5788 9999999999999999 7


Q ss_pred             CCCCcccccccCcceeEec--cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC---------CcEEEEEccccCCCeEE
Q 004969          530 HMPPSIRGMHYGAGTVTFD--EFDQLTSVHVNSMDELFLASGYSKNIALYDINS---------GRRLQVFADMHKEHINV  598 (721)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~--~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s---------~~~v~~l~~~h~~~V~s  598 (721)
                      ++..          .....  |...|.+++|+| +..+++++.|+.|++||+++         ++++..+.  |...|.+
T Consensus        89 ~~~~----------~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~  155 (342)
T 1yfq_A           89 SPSF----------QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK--VKNKIFT  155 (342)
T ss_dssp             SSSE----------EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS--SCCCEEE
T ss_pred             CCce----------EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe--eCCceEE
Confidence            7532          11123  567899999999 99999999999999999997         66666665  8899999


Q ss_pred             EEEcCCCCcEEEEEECCCcEEEEECCC-CCceeEEEecCCCCeE-EEEEec-CCCEEEEEeCCCcEEEEEcCCC------
Q 004969          599 VKFSNHSPSIFATSSFDQDVKLWDLRQ-KPIQPCYTASSSKGNV-MVCFSP-DDHYLLGKGSGTSMFVQSLRGD------  669 (721)
Q Consensus       599 I~fsPdg~~lLaSgs~DgtIrIWDlrs-~~~~~~~~~~~~~~~v-sl~fSp-dg~~Lasgs~Dg~I~VWDl~g~------  669 (721)
                      ++|+|++   +++++.|+.|++||+++ +..........+...+ +++|+| +++++++++.||.|++|+++..      
T Consensus       156 ~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~  232 (342)
T 1yfq_A          156 MDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNS  232 (342)
T ss_dssp             EEECSSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTC
T ss_pred             EEecCCc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccc
Confidence            9999875   99999999999999998 5433333334455555 899999 9999999999999999998743      


Q ss_pred             -c---cccccc---------CeEEEEECCCCCcccccccEEEEecCC
Q 004969          670 -P---FRDFNM---------SILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       670 -~---l~~~~~---------~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                       .   +..|..         .|.+++|+|++       .+|++|+..
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-------~~l~~~~~d  272 (342)
T 1yfq_A          233 SKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-------KFLYTAGSD  272 (342)
T ss_dssp             TTCEEEECCCCCTTCCSSCCCEEEEEECTTT-------CCEEEEETT
T ss_pred             ccceeeecccccccccccceeEEEEEEcCCC-------CEEEEecCC
Confidence             1   334433         89999999999       788888865

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.4e-25  Score=247.02  Aligned_cols=209  Identities=12%  Similarity=0.231  Sum_probs=162.8

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCC---CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcC--
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHEN---ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIR--  529 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~t---g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~--  529 (721)
                      .|++++|+|.++.+|++|+.||+|+|||+.+   +.........+|...|++++|+ +++.+|++|+.||+|++||+.  
T Consensus        65 ~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s~s~dg~i~vwd~~~~  143 (437)
T 3gre_A           65 SITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMI-PNFDAFAVSSKDGQIIVLKVNHY  143 (437)
T ss_dssp             CEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEEC-TTSSEEEEEETTSEEEEEEEEEE
T ss_pred             ceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEe-CCCCEEEEEeCCCEEEEEEeccc
Confidence            5999999997789999999999999999876   4321111111588999999998 688999999999999999995  


Q ss_pred             -CCCCcccccccC-cceeEec---cCCCeEEEE--EecCCCEEEEEeCCCcEEEEECCCCcEEEEEccc-cCCCeEEEEE
Q 004969          530 -HMPPSIRGMHYG-AGTVTFD---EFDQLTSVH--VNSMDELFLASGYSKNIALYDINSGRRLQVFADM-HKEHINVVKF  601 (721)
Q Consensus       530 -~~~~~~~~~~~~-~~~~~~~---~~~~V~sv~--~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~-h~~~V~sI~f  601 (721)
                       .++. ......+ .....+.   +...+.++.  +++++..+++++.|+.|++||+++++.+..+.+. |...|++++|
T Consensus       144 ~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~  222 (437)
T 3gre_A          144 QQESE-VKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICI  222 (437)
T ss_dssp             EETTE-EEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEE
T ss_pred             cCCce-eeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEE
Confidence             3332 1111111 1111111   445677777  5678899999999999999999999999999853 7899999999


Q ss_pred             cCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEe----cCCCEEEEEeCCCcEEEEEcC
Q 004969          602 SNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFS----PDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       602 sPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fS----pdg~~Lasgs~Dg~I~VWDl~  667 (721)
                      +|++ .++++|+.||+|++||+++++....+.. .+...+ +++|+    |++.+|++|+.||.|++||++
T Consensus       223 s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~  291 (437)
T 3gre_A          223 DEEC-CVLILGTTRGIIDIWDIRFNVLIRSWSF-GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFV  291 (437)
T ss_dssp             CTTS-CEEEEEETTSCEEEEETTTTEEEEEEBC-TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETT
T ss_pred             CCCC-CEEEEEcCCCeEEEEEcCCccEEEEEec-CCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcC
Confidence            9998 8999999999999999999754333333 344445 88555    568899999999999999997

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.1e-23  Score=218.92  Aligned_cols=221  Identities=14%  Similarity=0.166  Sum_probs=181.2

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC-
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP-  533 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~-  533 (721)
                      .|++++| | ++.++++|+.||.|++||+.++.....+.  .|...|.+++|+ +++.++++|+.||.|++|++..... 
T Consensus        20 ~v~~~~~-~-~~~~l~s~~~dg~v~vw~~~~~~~~~~~~--~~~~~v~~~~~~-~~~~~l~~~~~dg~i~~~~~~~~~~~   94 (313)
T 3odt_A           20 DVRDVVA-V-DDSKVASVSRDGTVRLWSKDDQWLGTVVY--TGQGFLNSVCYD-SEKELLLFGGKDTMINGVPLFATSGE   94 (313)
T ss_dssp             CEEEEEE-E-ETTEEEEEETTSEEEEEEESSSEEEEEEE--ECSSCEEEEEEE-TTTTEEEEEETTSCEEEEETTCCTTS
T ss_pred             CcEEEEe-c-CCCEEEEEEcCCcEEEEECCCCEEEEEee--cCCccEEEEEEC-CCCCEEEEecCCCeEEEEEeeecCCC
Confidence            5999999 8 88999999999999999999998888877  788999999998 6899999999999999999876431 


Q ss_pred             -cccccccCcc-----------------------------ee-EeccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCC
Q 004969          534 -SIRGMHYGAG-----------------------------TV-TFDEFDQLTSVHVNS-MDELFLASGYSKNIALYDINS  581 (721)
Q Consensus       534 -~~~~~~~~~~-----------------------------~~-~~~~~~~V~sv~~sp-~~~~lls~g~Dg~IrlWDl~s  581 (721)
                       ......++..                             .. ...+...+.+++++| ++..+++++.||.|++||  .
T Consensus        95 ~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~  172 (313)
T 3odt_A           95 DPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--N  172 (313)
T ss_dssp             CC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--T
T ss_pred             CcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--c
Confidence             1111111110                             00 113567799999988 889999999999999999  5


Q ss_pred             CcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCc
Q 004969          582 GRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTS  660 (721)
Q Consensus       582 ~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~  660 (721)
                      ++....+...|...+.+++|+|++ . +++++.||.|++||+++++.  +..+.+|...+ +++|+|++ .+++++.||.
T Consensus       173 ~~~~~~~~~~~~~~i~~~~~~~~~-~-~~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~  247 (313)
T 3odt_A          173 DKVIKTFSGIHNDVVRHLAVVDDG-H-FISCSNDGLIKLVDMHTGDV--LRTYEGHESFVYCIKLLPNG-DIVSCGEDRT  247 (313)
T ss_dssp             TEEEEEECSSCSSCEEEEEEEETT-E-EEEEETTSEEEEEETTTCCE--EEEEECCSSCEEEEEECTTS-CEEEEETTSE
T ss_pred             CceEEEEeccCcccEEEEEEcCCC-e-EEEccCCCeEEEEECCchhh--hhhhhcCCceEEEEEEecCC-CEEEEecCCE
Confidence            667777776689999999999998 4 99999999999999998854  55566677776 89999999 5889999999


Q ss_pred             EEEEEcC-CCc---ccccccCeEEEEECCCC
Q 004969          661 MFVQSLR-GDP---FRDFNMSILAAYTRPSS  687 (721)
Q Consensus       661 I~VWDl~-g~~---l~~~~~~V~~v~fsP~~  687 (721)
                      |++||++ +..   +..+...|.++.|+|++
T Consensus       248 v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~  278 (313)
T 3odt_A          248 VRIWSKENGSLKQVITLPAISIWSVDCMSNG  278 (313)
T ss_dssp             EEEECTTTCCEEEEEECSSSCEEEEEECTTS
T ss_pred             EEEEECCCCceeEEEeccCceEEEEEEccCC
Confidence            9999987 333   34556789999999999

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.94  E-value=7.1e-25  Score=238.26  Aligned_cols=196  Identities=13%  Similarity=0.151  Sum_probs=160.3

Q ss_pred             CeEEEEEeCCCCCEEEEEE--CCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGT--LDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP  532 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs--~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~  532 (721)
                      ++++++|+| ||+++++++  .|++|+|||+++++.+..+.   |...|.+|+|+ +++.++++++.+ .+++|+..++.
T Consensus       135 ~~~~v~fSp-Dg~~la~as~~~d~~i~iwd~~~~~~~~~~~---~~~~V~~v~fs-pdg~~l~s~s~~-~~~~~~~~~~~  208 (365)
T 4h5i_A          135 YTKLVYISR-EGTVAAIASSKVPAIMRIIDPSDLTEKFEIE---TRGEVKDLHFS-TDGKVVAYITGS-SLEVISTVTGS  208 (365)
T ss_dssp             CEEEEEECT-TSSCEEEEESCSSCEEEEEETTTTEEEEEEE---CSSCCCEEEEC-TTSSEEEEECSS-CEEEEETTTCC
T ss_pred             CEEEEEEcC-CCCEEEEEECCCCCEEEEeECCCCcEEEEeC---CCCceEEEEEc-cCCceEEeccce-eEEEEEeccCc
Confidence            589999999 999876544  78999999999999988874   66789999998 789999999866 45566665544


Q ss_pred             CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCC----cEEEEECCCCcE----EEEEccccCCCeEEEEEcCC
Q 004969          533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSK----NIALYDINSGRR----LQVFADMHKEHINVVKFSNH  604 (721)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg----~IrlWDl~s~~~----v~~l~~~h~~~V~sI~fsPd  604 (721)
                      ....       .....|...|.+++|+|++..+++++.|+    .+++||+..+..    ...+.+ |...|++++|+|+
T Consensus       209 ~~~~-------~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~V~~~~~Spd  280 (365)
T 4h5i_A          209 CIAR-------KTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTN-RFKGITSMDVDMK  280 (365)
T ss_dssp             EEEE-------ECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEES-SCSCEEEEEECTT
T ss_pred             ceee-------eecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecC-CCCCeEeEEECCC
Confidence            3211       11123445689999999999999998776    688999887653    344555 8999999999999


Q ss_pred             CCcEEEEEECCCcEEEEECCCCCceeEEE-ecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          605 SPSIFATSSFDQDVKLWDLRQKPIQPCYT-ASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       605 g~~lLaSgs~DgtIrIWDlrs~~~~~~~~-~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                      | .+||+|+.|++|+|||++++++  +.. ..+|...+ +++|||||++|++|+.|++|+||++.
T Consensus       281 g-~~lasgs~D~~V~iwd~~~~~~--~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip  342 (365)
T 4h5i_A          281 G-ELAVLASNDNSIALVKLKDLSM--SKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLP  342 (365)
T ss_dssp             S-CEEEEEETTSCEEEEETTTTEE--EEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred             C-CceEEEcCCCEEEEEECCCCcE--EEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence            9 8999999999999999999843  554 46788887 99999999999999999999999997

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.93  E-value=4.8e-24  Score=230.78  Aligned_cols=226  Identities=16%  Similarity=0.214  Sum_probs=179.8

Q ss_pred             CeEEEEEeCCCCC-EEEEEECCCeEEEEEC----CCCe------EEEEeec--C------CCCCCeEEEEEeeCCCCEEE
Q 004969          455 RPRQFEYHPSISC-LMVFGTLDGEIVVVNH----ENEN------IVSYIPS--F------GAMNSVLGLCWLKKYPSKLI  515 (721)
Q Consensus       455 ~V~~lafsP~dg~-~LasGs~DG~I~IWdl----~tg~------~i~~l~~--~------~H~~~V~sl~fsp~d~~~La  515 (721)
                      .|++++|+| ++. ++++|+.||.|++|++    .+++      ....+..  .      +|.+.|++++|+ +++++|+
T Consensus        47 ~v~~~~~s~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~  124 (425)
T 1r5m_A           47 NIVSSTWNP-LDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWS-HDGNSIV  124 (425)
T ss_dssp             CCSEEEECS-SCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEEC-TTSSEEE
T ss_pred             ceEEEEECC-CCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEc-CCCCEEE
Confidence            489999999 788 9999999999999999    8887      4444432  1      267799999998 6899999


Q ss_pred             EEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcc-----
Q 004969          516 AGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD-----  590 (721)
Q Consensus       516 Sgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~-----  590 (721)
                      +|+.||.|++||... .. .        .....|...|.+++|+|++..+++++.|+.|++||+.+++.+..+..     
T Consensus       125 ~~~~dg~i~i~~~~~-~~-~--------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  194 (425)
T 1r5m_A          125 TGVENGELRLWNKTG-AL-L--------NVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGG  194 (425)
T ss_dssp             EEETTSCEEEEETTS-CE-E--------EEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC----
T ss_pred             EEeCCCeEEEEeCCC-Ce-e--------eeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCc
Confidence            999999999999332 21 1        11123567799999999999999999999999999987765543321     


Q ss_pred             --------------------------------------------------ccCCCeEEEEEcCCCCcEEEEEECCCcEEE
Q 004969          591 --------------------------------------------------MHKEHINVVKFSNHSPSIFATSSFDQDVKL  620 (721)
Q Consensus       591 --------------------------------------------------~h~~~V~sI~fsPdg~~lLaSgs~DgtIrI  620 (721)
                                                                        .|...|.+++|+|++ .++++++.|+.|++
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i  273 (425)
T 1r5m_A          195 SSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTN-KLLLSASDDGTLRI  273 (425)
T ss_dssp             -----------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEE
T ss_pred             cceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCC-CEEEEEcCCCEEEE
Confidence                                                              277889999999999 79999999999999


Q ss_pred             EECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC-Cc---ccccccCeEEEEECCCCCccccccc
Q 004969          621 WDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG-DP---FRDFNMSILAAYTRPSSKSEIVKVN  695 (721)
Q Consensus       621 WDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g-~~---l~~~~~~V~~v~fsP~~~~~~v~v~  695 (721)
                      ||+++++.  ...+..|...+ +++|+|++ ++++++.|+.|++||++. ..   +..+...+.++.|+|++       .
T Consensus       274 ~d~~~~~~--~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~-------~  343 (425)
T 1r5m_A          274 WHGGNGNS--QNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDG-------Q  343 (425)
T ss_dssp             ECSSSBSC--SEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTS-------S
T ss_pred             EECCCCcc--ceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCC-------C
Confidence            99998754  44556666666 89999999 999999999999999973 32   34556789999999999       8


Q ss_pred             EEEEecCC
Q 004969          696 LLASTDHC  703 (721)
Q Consensus       696 lLASgs~~  703 (721)
                      +|++|+..
T Consensus       344 ~l~~~~~d  351 (425)
T 1r5m_A          344 KYAVAFMD  351 (425)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEECC
Confidence            88888865

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.93  E-value=3.2e-24  Score=225.51  Aligned_cols=225  Identities=18%  Similarity=0.317  Sum_probs=192.2

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|.+++|+| ++++|++|+.||.|++||+.+++.+..+.  +|...|.+++|+ ++++++++|+.||+|++||+++++..
T Consensus        67 ~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~  142 (312)
T 4ery_A           67 GISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLK--GHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKTGKCL  142 (312)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEEC-SSSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             ceEEEEEcC-CCCEEEEECCCCEEEEEECCCCcEEEEEc--CCCCCEEEEEEc-CCCCEEEEEeCCCcEEEEECCCCEEE
Confidence            589999999 99999999999999999999999998887  889999999998 68899999999999999999886531


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF  614 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~  614 (721)
                               .....|..+|.+++|+|++..+++++.||.|++||+++++.+..+...+...+..++|+|++ .++++++.
T Consensus       143 ---------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~  212 (312)
T 4ery_A          143 ---------KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATL  212 (312)
T ss_dssp             ---------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTS-SEEEEEET
T ss_pred             ---------EEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCC-CEEEEEcC
Confidence                     11123556799999999999999999999999999999999888865577889999999999 79999999


Q ss_pred             CCcEEEEECCCCCceeEEEecCCCCe---EEEEEe-cCCCEEEEEeCCCcEEEEEcCCC----cccccccCeEEEEECCC
Q 004969          615 DQDVKLWDLRQKPIQPCYTASSSKGN---VMVCFS-PDDHYLLGKGSGTSMFVQSLRGD----PFRDFNMSILAAYTRPS  686 (721)
Q Consensus       615 DgtIrIWDlrs~~~~~~~~~~~~~~~---vsl~fS-pdg~~Lasgs~Dg~I~VWDl~g~----~l~~~~~~V~~v~fsP~  686 (721)
                      |+.|++||+++++.  ...+.+|...   +...++ +++.++++|+.||.|++||++..    .+.+|...|..++|+|+
T Consensus       213 d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~  290 (312)
T 4ery_A          213 DNTLKLWDYSKGKC--LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT  290 (312)
T ss_dssp             TTEEEEEETTTTEE--EEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSS
T ss_pred             CCeEEEEECCCCcE--EEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCc
Confidence            99999999998854  4444444432   234444 68899999999999999999843    24567789999999999


Q ss_pred             CCcccccccEEEEecC
Q 004969          687 SKSEIVKVNLLASTDH  702 (721)
Q Consensus       687 ~~~~~v~v~lLASgs~  702 (721)
                      +       +++++++.
T Consensus       291 ~-------~~l~s~~~  299 (312)
T 4ery_A          291 E-------NIIASAAL  299 (312)
T ss_dssp             S-------SEEEEEEC
T ss_pred             C-------CceEEEEc
Confidence            9       99999874

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.93  E-value=1.3e-24  Score=234.93  Aligned_cols=227  Identities=13%  Similarity=0.073  Sum_probs=184.8

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe------EEEEeecCCCCCCeEEEEEeeCC----C---CEEEEEeCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN------IVSYIPSFGAMNSVLGLCWLKKY----P---SKLIAGSDNG  521 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~------~i~~l~~~~H~~~V~sl~fsp~d----~---~~LaSgs~DG  521 (721)
                      .|++++|+|   ++|++|+.||+|++|++.+++      .+..+.  +|...|++++|+ ++    +   .+|++++.||
T Consensus        18 ~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~-~~~~~~g~~~~~l~s~~~dg   91 (397)
T 1sq9_A           18 DIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF--VHKSGLHHVDVL-QAIERDAFELCLVATTSFSG   91 (397)
T ss_dssp             CEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE--CCTTCEEEEEEE-EEEETTTEEEEEEEEEETTS
T ss_pred             CeEEEEecC---CeEEEEcCCCEEEEEECCCcccccCCCcceEEe--cCCCcEEEEEEe-cccccCCccccEEEEEcCCC
Confidence            599999999   899999999999999999887      666666  899999999999 45    7   8999999999


Q ss_pred             eEEEEEcCCCCCcccccccCcceeEec-c-----CCCeEEEEEe----cCCCE-EEEEeCCCcEEEEECCC------CcE
Q 004969          522 SLKLYDIRHMPPSIRGMHYGAGTVTFD-E-----FDQLTSVHVN----SMDEL-FLASGYSKNIALYDINS------GRR  584 (721)
Q Consensus       522 tVrIWDi~~~~~~~~~~~~~~~~~~~~-~-----~~~V~sv~~s----p~~~~-lls~g~Dg~IrlWDl~s------~~~  584 (721)
                      .|++||+.++......     ....+. +     ...|.+++|+    |++.. +++++.||.|++||+++      ++.
T Consensus        92 ~i~iw~~~~~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  166 (397)
T 1sq9_A           92 DLLFYRITREDETKKV-----IFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT  166 (397)
T ss_dssp             CEEEEEEEECTTTCCE-----EEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred             CEEEEEccCCcccccc-----cceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccce
Confidence            9999999886531000     011222 2     3779999999    99999 99999999999999998      665


Q ss_pred             EE-----EEc------cccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecC---C---CCeE-EEEEe
Q 004969          585 LQ-----VFA------DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASS---S---KGNV-MVCFS  646 (721)
Q Consensus       585 v~-----~l~------~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~---~---~~~v-sl~fS  646 (721)
                      +.     .+.      ..|...|.+++|+|++  ++++|+.||.|++||+++++.  +..+..   |   ...+ +++|+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~h~~~~~~i~~i~~~  242 (397)
T 1sq9_A          167 LNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRP--LYNFESQHSMINNSNSIRSVKFS  242 (397)
T ss_dssp             TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEE--EEEEECCC---CCCCCEEEEEEC
T ss_pred             eeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCce--eEEEeccccccccCCccceEEEC
Confidence            55     553      2388999999999988  899999999999999998744  555555   5   5555 89999


Q ss_pred             cCCCEEEEEeCC---CcEEEEEcC-CCc---ccc-------------cccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          647 PDDHYLLGKGSG---TSMFVQSLR-GDP---FRD-------------FNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       647 pdg~~Lasgs~D---g~I~VWDl~-g~~---l~~-------------~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      |++.+|++++.|   |.|++||++ +..   +..             |...|.++.|+|++       .+|++|+..
T Consensus       243 ~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------~~l~~~~~d  312 (397)
T 1sq9_A          243 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG-------ETLCSAGWD  312 (397)
T ss_dssp             SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSS-------SEEEEEETT
T ss_pred             CCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCC-------CEEEEEeCC
Confidence            999999999999   999999997 332   344             77889999999999       888988865

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.93  E-value=2.5e-24  Score=232.77  Aligned_cols=224  Identities=13%  Similarity=0.122  Sum_probs=176.3

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|.+++|+|.++.++++|+.||.|++||+.+..........+|...|.+++|+ +++.+|++|+.||.|++||++. +. 
T Consensus       120 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~i~d~~~-~~-  196 (383)
T 3ei3_B          120 AITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVS-VSRQMLATGDSTGRLLLLGLDG-HE-  196 (383)
T ss_dssp             BEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEE-TTTTEEEEEETTSEEEEEETTS-CE-
T ss_pred             ceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEEC-CCCCEEEEECCCCCEEEEECCC-CE-
Confidence            69999999977799999999999999999964443333334566889999998 7889999999999999999953 21 


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCC----CcEEEEEccccCCCeEEEEEcC-CCCcE
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDE-LFLASGYSKNIALYDINS----GRRLQVFADMHKEHINVVKFSN-HSPSI  608 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~-~lls~g~Dg~IrlWDl~s----~~~v~~l~~~h~~~V~sI~fsP-dg~~l  608 (721)
                      .        .....|...|.+++|+|++. .+++++.|+.|++||+++    +..+..+.  |...|.+++|+| ++ .+
T Consensus       197 ~--------~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~-~~  265 (383)
T 3ei3_B          197 I--------FKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP--HEKPVNAAYFNPTDS-TK  265 (383)
T ss_dssp             E--------EEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEE--CSSCEEEEEECTTTS-CE
T ss_pred             E--------EEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEec--CCCceEEEEEcCCCC-CE
Confidence            1        11224667899999999998 899999999999999998    66777773  999999999999 88 89


Q ss_pred             EEEEECCCcEEEEECCCCCceeEEEec-----CCC-----------CeEEEEEecCCCEEEEEeCCCcEEEEEcC-CCcc
Q 004969          609 FATSSFDQDVKLWDLRQKPIQPCYTAS-----SSK-----------GNVMVCFSPDDHYLLGKGSGTSMFVQSLR-GDPF  671 (721)
Q Consensus       609 LaSgs~DgtIrIWDlrs~~~~~~~~~~-----~~~-----------~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~l  671 (721)
                      +++++.|+.|++||++++.........     .+.           ..+.++|+|+|++  +|+.||.|++||+. +..+
T Consensus       266 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~  343 (383)
T 3ei3_B          266 LLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLV  343 (383)
T ss_dssp             EEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEE
T ss_pred             EEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCcee
Confidence            999999999999999987654433321     111           2224666666666  66789999999997 4433


Q ss_pred             c---c--cccCeEEEEECCCCCcccccccEEEEec
Q 004969          672 R---D--FNMSILAAYTRPSSKSEIVKVNLLASTD  701 (721)
Q Consensus       672 ~---~--~~~~V~~v~fsP~~~~~~v~v~lLASgs  701 (721)
                      .   .  +...+..++|+|++       .+||+|+
T Consensus       344 ~~l~~~~~~~~~~~~~~s~~g-------~~l~s~s  371 (383)
T 3ei3_B          344 HQLRDPNAAGIISLNKFSPTG-------DVLASGM  371 (383)
T ss_dssp             EEECBTTBCSCCCEEEECTTS-------SEEEEEE
T ss_pred             eeecCCCCCceEEEEEEecCc-------cEEEEec
Confidence            2   2  24566777999999       8999996

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.93  E-value=1.6e-24  Score=229.62  Aligned_cols=228  Identities=11%  Similarity=0.191  Sum_probs=180.2

Q ss_pred             CeEEEEEeCCCC-CEEEEEEC---CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCC--CCEEEEEeCCCeEEEEEc
Q 004969          455 RPRQFEYHPSIS-CLMVFGTL---DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKY--PSKLIAGSDNGSLKLYDI  528 (721)
Q Consensus       455 ~V~~lafsP~dg-~~LasGs~---DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d--~~~LaSgs~DGtVrIWDi  528 (721)
                      .|++++|+| ++ .++++|+.   ||.|++||+.+++....... +|...|++++|+|..  +.+|++|+.||.|++||+
T Consensus        20 ~v~~~~~~p-~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~   97 (357)
T 3i2n_A           20 TVFDCKWVP-CSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI-EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNL   97 (357)
T ss_dssp             CEEEEEECT-TSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE-EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECT
T ss_pred             ceEEEEEcC-CCceEEEecCccCCCcEEEEEeCCCCcccceeee-cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeC
Confidence            599999999 55 56667766   99999999998887655443 788999999999543  699999999999999999


Q ss_pred             CCCCCcccccccCcceeEeccCCCeEEEEE------ecCCCEEEEEeCCCcEEEEECCCCc-EEEEEccccCC----CeE
Q 004969          529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHV------NSMDELFLASGYSKNIALYDINSGR-RLQVFADMHKE----HIN  597 (721)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~------sp~~~~lls~g~Dg~IrlWDl~s~~-~v~~l~~~h~~----~V~  597 (721)
                      .+++.....        ...|...|.+++|      +|++..+++++.||.|++||+++++ .+..+.. |.+    .+.
T Consensus        98 ~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~-~~~~~~~~v~  168 (357)
T 3i2n_A           98 EAPEMPVYS--------VKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEP-VQGENKRDCW  168 (357)
T ss_dssp             TSCSSCSEE--------ECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECC-CTTSCCCCEE
T ss_pred             CCCCccEEE--------EEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccc-cCCCCCCceE
Confidence            986522221        1235567888855      6789999999999999999999887 6777764 443    899


Q ss_pred             EEE----EcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEec---CCCEEEEEeCCCcEEEEEcCCC-
Q 004969          598 VVK----FSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSP---DDHYLLGKGSGTSMFVQSLRGD-  669 (721)
Q Consensus       598 sI~----fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSp---dg~~Lasgs~Dg~I~VWDl~g~-  669 (721)
                      +++    |+|++ .++++++.||.|++||+++++.  ...........+++|+|   ++.++++++.||.|++||++.. 
T Consensus       169 ~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  245 (357)
T 3i2n_A          169 TVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNMAL--RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQH  245 (357)
T ss_dssp             EEEEECCCC-CC-CEEEEEETTSEEEEEETTTTEE--EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEE
T ss_pred             EEEEEeccCCCC-CEEEEEccCCeEEEEECccCce--eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCC
Confidence            998    67888 7999999999999999999754  33333333444999999   9999999999999999998722 


Q ss_pred             c---cc-----ccccCeEEEEECCCCCccccccc-EEEEecCC
Q 004969          670 P---FR-----DFNMSILAAYTRPSSKSEIVKVN-LLASTDHC  703 (721)
Q Consensus       670 ~---l~-----~~~~~V~~v~fsP~~~~~~v~v~-lLASgs~~  703 (721)
                      .   +.     .|...|.+++|+|++       . ++++|+..
T Consensus       246 ~~~~~~~~~~~~~~~~v~~~~~~~~~-------~~~l~~~~~d  281 (357)
T 3i2n_A          246 PTKGFASVSEKAHKSTVWQVRHLPQN-------RELFLTAGGA  281 (357)
T ss_dssp             TTTEEEEEEEECCSSCEEEEEEETTE-------EEEEEEEETT
T ss_pred             cccceeeeccCCCcCCEEEEEECCCC-------CcEEEEEeCC
Confidence            2   22     677899999999998       6 78888876

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.93  E-value=2e-24  Score=233.34  Aligned_cols=239  Identities=13%  Similarity=0.133  Sum_probs=188.5

Q ss_pred             CeEEEEEeCCC----C---CEEEEEECCCeEEEEECCCCeE-----EEEeecCCC-----CCCeEEEEEee---CCCCE-
Q 004969          455 RPRQFEYHPSI----S---CLMVFGTLDGEIVVVNHENENI-----VSYIPSFGA-----MNSVLGLCWLK---KYPSK-  513 (721)
Q Consensus       455 ~V~~lafsP~d----g---~~LasGs~DG~I~IWdl~tg~~-----i~~l~~~~H-----~~~V~sl~fsp---~d~~~-  513 (721)
                      .|++++|+| +    +   .+|++|+.||.|++|++.+++.     ...+.  +|     ...|.+++|++   +++.. 
T Consensus        64 ~v~~~~~~~-~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~  140 (397)
T 1sq9_A           64 GLHHVDVLQ-AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLD--LLDSDMKKHSFWALKWGASNDRLLSHR  140 (397)
T ss_dssp             CEEEEEEEE-EEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEEC--CSCTTGGGSCEEEEEEECCC----CEE
T ss_pred             cEEEEEEec-ccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeec--ccccccCCCcEEEEEEeeccCCCCceE
Confidence            599999999 7    8   9999999999999999998875     66666  66     58999999982   36778 


Q ss_pred             EEEEeCCCeEEEEEcCC------CCCcccccccCcceeE------eccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 004969          514 LIAGSDNGSLKLYDIRH------MPPSIRGMHYGAGTVT------FDEFDQLTSVHVNSMDELFLASGYSKNIALYDINS  581 (721)
Q Consensus       514 LaSgs~DGtVrIWDi~~------~~~~~~~~~~~~~~~~------~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s  581 (721)
                      |++++.||.|++||+.+      +.....   .......      ..+...|.+++|+|++ .+++++.||.|++||+++
T Consensus       141 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~  216 (397)
T 1sq9_A          141 LVATDVKGTTYIWKFHPFADESNSLTLNW---SPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELST  216 (397)
T ss_dssp             EEEEETTSCEEEEEEESSSSHHHHTTTCC---CCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT
T ss_pred             EEEEeCCCcEEEEeCCccccccccceeec---cCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCC
Confidence            99999999999999987      433110   0000111      2356779999999999 999999999999999999


Q ss_pred             CcEEEEEccc--c---CCCeEEEEEcCCCCcEEEEEECC---CcEEEEECCCCCceeEEEecC-------------CCCe
Q 004969          582 GRRLQVFADM--H---KEHINVVKFSNHSPSIFATSSFD---QDVKLWDLRQKPIQPCYTASS-------------SKGN  640 (721)
Q Consensus       582 ~~~v~~l~~~--h---~~~V~sI~fsPdg~~lLaSgs~D---gtIrIWDlrs~~~~~~~~~~~-------------~~~~  640 (721)
                      ++.+..+...  |   ...|.+++|+|++ .++++++.|   |.|++||+++++.  +..+..             |...
T Consensus       217 ~~~~~~~~~~~~h~~~~~~i~~i~~~~~~-~~l~~~~~d~~~g~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  293 (397)
T 1sq9_A          217 LRPLYNFESQHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGER--IGSLSVPTHSSQASLGEFAHSSW  293 (397)
T ss_dssp             TEEEEEEECCC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTCCE--EEEECBC--------CCBSBSSC
T ss_pred             CceeEEEeccccccccCCccceEEECCCC-CEEEEEecCCCCceEEEEECCCCcc--cceeccCcccccccccccccCCc
Confidence            9999888731  7   8999999999998 799999999   9999999998854  444554             6666


Q ss_pred             E-EEEEecCCCEEEEEeCCCcEEEEEcCC-Cc---cc------cc---------------ccCeEEEEECCCCCccccc-
Q 004969          641 V-MVCFSPDDHYLLGKGSGTSMFVQSLRG-DP---FR------DF---------------NMSILAAYTRPSSKSEIVK-  693 (721)
Q Consensus       641 v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g-~~---l~------~~---------------~~~V~~v~fsP~~~~~~v~-  693 (721)
                      + +++|+|++++|++++.||.|++||++. ..   +.      .|               ...|.+++|+|+++....+ 
T Consensus       294 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~  373 (397)
T 1sq9_A          294 VMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGA  373 (397)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTC
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccc
Confidence            6 899999999999999999999999973 22   34      45               6789999999997211110 


Q ss_pred             --ccEEEEecCC
Q 004969          694 --VNLLASTDHC  703 (721)
Q Consensus       694 --v~lLASgs~~  703 (721)
                        -++|++|+..
T Consensus       374 ~~~~~l~s~~~d  385 (397)
T 1sq9_A          374 DLNESLCCVCLD  385 (397)
T ss_dssp             TTSCEEEEEETT
T ss_pred             cccceEEEecCC
Confidence              1378888765

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.93  E-value=5.4e-25  Score=261.86  Aligned_cols=230  Identities=17%  Similarity=0.166  Sum_probs=190.2

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCC--eEEEEeecCCCCCCeEEEEEeeCC-CCEEEEEeCCCeEEEEEcCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENE--NIVSYIPSFGAMNSVLGLCWLKKY-PSKLIAGSDNGSLKLYDIRHM  531 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg--~~i~~l~~~~H~~~V~sl~fsp~d-~~~LaSgs~DGtVrIWDi~~~  531 (721)
                      .|++++|+| +++++++|+.||+|+|||+.++  ..+..+.  +|.++|++++|+|.. +++|++|+.||+|++||+.++
T Consensus        11 ~V~~l~~s~-dg~~latg~~dg~I~vwd~~~~~~~~~~~l~--~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~   87 (753)
T 3jro_A           11 LIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLT--GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG   87 (753)
T ss_dssp             CEEEECCCS-SSCCEEEEETTTEEEEEEEETTEEEEEEEEC--CCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETT
T ss_pred             eeEEEEECC-CCCeEEEEECCCcEEEEecCCCCCccceecc--CCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCC
Confidence            599999999 8999999999999999999844  4555555  899999999998432 899999999999999999885


Q ss_pred             CCcccccccCcceeEeccCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCCc--EEEEEccccCCCeEEEEEcCC---
Q 004969          532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSM--DELFLASGYSKNIALYDINSGR--RLQVFADMHKEHINVVKFSNH---  604 (721)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~--~~~lls~g~Dg~IrlWDl~s~~--~v~~l~~~h~~~V~sI~fsPd---  604 (721)
                      ...       .......|...|.+++|+|+  +..+++++.||.|++||++++.  ....+.+ |...|.+++|+|.   
T Consensus        88 ~~~-------~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~-~~~~v~~l~~~p~~~~  159 (753)
T 3jro_A           88 RWS-------QIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA-HAIGVNSASWAPATIE  159 (753)
T ss_dssp             EEE-------EEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEEC-CSSCEEEEEECCCC--
T ss_pred             ccc-------ccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeec-CCCceEEEEecCcccc
Confidence            420       11122346678999999999  9999999999999999999873  3445555 9999999999994   


Q ss_pred             ----------CCcEEEEEECCCcEEEEECCCCCc--eeEEEecCCCCeE-EEEEecC---CCEEEEEeCCCcEEEEEcCC
Q 004969          605 ----------SPSIFATSSFDQDVKLWDLRQKPI--QPCYTASSSKGNV-MVCFSPD---DHYLLGKGSGTSMFVQSLRG  668 (721)
Q Consensus       605 ----------g~~lLaSgs~DgtIrIWDlrs~~~--~~~~~~~~~~~~v-sl~fSpd---g~~Lasgs~Dg~I~VWDl~g  668 (721)
                                + ..+++|+.||+|++||++++..  .....+.+|...+ +++|+|+   +.++++|+.||.|++||++.
T Consensus       160 ~~~~~~~~~d~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~  238 (753)
T 3jro_A          160 EDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN  238 (753)
T ss_dssp             -------CGGG-CCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred             cccccccCCCC-CEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence                      5 7999999999999999988643  3345667787777 8999999   99999999999999999984


Q ss_pred             C------c---ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          669 D------P---FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       669 ~------~---l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      .      .   ...+...|.+++|+|++       ..+++|+..
T Consensus       239 ~~~~~~~~~~~~~~~~~~v~~l~~spdg-------~~l~s~s~D  275 (753)
T 3jro_A          239 EQGPWKKTLLKEEKFPDVLWRASWSLSG-------NVLALSGGD  275 (753)
T ss_dssp             SSSCCBCCBSSSSCCSSCCCCEEECTTT-------CCEEEECSS
T ss_pred             CCCcceeEEeccCCCCCceEEEEEcCCC-------CEEEEEcCC
Confidence            2      1   22356789999999999       888888775

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.6e-24  Score=262.91  Aligned_cols=223  Identities=13%  Similarity=0.140  Sum_probs=180.6

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|++++|+| ++.+||+|+.||+|+||+..+++....+   .|..+|.+++|+|  +.+|++++.|++|++||+.+++. 
T Consensus        19 ~V~~lafsp-dg~~lAsgs~Dg~I~lw~~~~~~~~~~~---~~~~~V~~l~fsp--g~~L~S~s~D~~v~lWd~~~~~~-   91 (902)
T 2oaj_A           19 KPIAAAFDF-TQNLLAIATVTGEVHIYGQQQVEVVIKL---EDRSAIKEMRFVK--GIYLVVINAKDTVYVLSLYSQKV-   91 (902)
T ss_dssp             CEEEEEEET-TTTEEEEEETTSEEEEECSTTCEEEEEC---SSCCCEEEEEEET--TTEEEEEETTCEEEEEETTTCSE-
T ss_pred             CcEEEEECC-CCCEEEEEeCCCEEEEEeCCCcEEEEEc---CCCCCEEEEEEcC--CCEEEEEECcCeEEEEECCCCcE-
Confidence            599999999 9999999999999999999887766554   5778999999995  67999999999999999998653 


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEE-----------EEEccccCCCeEEEEEcC
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRL-----------QVFADMHKEHINVVKFSN  603 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v-----------~~l~~~h~~~V~sI~fsP  603 (721)
                               ...+.+...|++++|+|++.++++|+.||+|++||+++++..           ..+. +|.+.|.+++|+|
T Consensus        92 ---------~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~-~h~~~V~sl~~sp  161 (902)
T 2oaj_A           92 ---------LTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPA-ARLSPIVSIQWNP  161 (902)
T ss_dssp             ---------EEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSS-SCCCCCCEEEEET
T ss_pred             ---------EEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccc-cCCCCeEEEEEcc
Confidence                     233446678999999999999999999999999999988764           1223 3889999999999


Q ss_pred             CCCcEEEEEECCCcEEEEECCCCCceeEEEecCC------------------CCeE-EEEEecCCCEEEEEeCCCcEEEE
Q 004969          604 HSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSS------------------KGNV-MVCFSPDDHYLLGKGSGTSMFVQ  664 (721)
Q Consensus       604 dg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~------------------~~~v-sl~fSpdg~~Lasgs~Dg~I~VW  664 (721)
                      ++...+++|+.||+| +||+++++..  ..+..+                  ...+ +++|+|+|.+|++|+.||.|++|
T Consensus       162 ~~~~~l~~g~~dg~v-lWd~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lW  238 (902)
T 2oaj_A          162 RDIGTVLISYEYVTL-TYSLVENEIK--QSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFW  238 (902)
T ss_dssp             TEEEEEEEECSSCEE-EEETTTTEEE--EEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred             CCCCEEEEEeCCCcE-EEECCCCceE--EEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEE
Confidence            755789999999999 9999998543  333333                  3444 99999999999999999999999


Q ss_pred             EcC-CCccc--c-------------------cccCeEEEEECC----CCCcccccccEEEEecCC
Q 004969          665 SLR-GDPFR--D-------------------FNMSILAAYTRP----SSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       665 Dl~-g~~l~--~-------------------~~~~V~~v~fsP----~~~~~~v~v~lLASgs~~  703 (721)
                      |++ ++.+.  .                   +...|.+++|+|    ++.      .++++|+..
T Consensus       239 d~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~------~ll~sg~~~  297 (902)
T 2oaj_A          239 DANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYT------SLLISHKSI  297 (902)
T ss_dssp             ETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEE------EEEEEEECS
T ss_pred             ECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCC------EEEEeCCCC
Confidence            997 44322  1                   133699999954    431      467777543

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.8e-25  Score=242.84  Aligned_cols=235  Identities=15%  Similarity=0.219  Sum_probs=186.4

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe------EEEEe-ecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEE
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN------IVSYI-PSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYD  527 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~------~i~~l-~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWD  527 (721)
                      .|++++|+|+++.++++|+.||.|++||+.+++      ....+ ...+|...|.+++|+|..+.++++++.||.|++||
T Consensus       115 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd  194 (416)
T 2pm9_A          115 SVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWD  194 (416)
T ss_dssp             CCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEE
T ss_pred             ceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEE
Confidence            589999999448999999999999999999876      32222 12378899999999954488999999999999999


Q ss_pred             cCCCCCcccccccCcceeEeccCCCeEEEEEecCC-CEEEEEeCCC---cEEEEECCCC-cEEEEEc-cccCCCeEEEEE
Q 004969          528 IRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD-ELFLASGYSK---NIALYDINSG-RRLQVFA-DMHKEHINVVKF  601 (721)
Q Consensus       528 i~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~-~~lls~g~Dg---~IrlWDl~s~-~~v~~l~-~~h~~~V~sI~f  601 (721)
                      +++++.... ...+..  ...+...|.+++|+|++ ..+++++.|+   .|++||++++ +++..+. + |...|.+++|
T Consensus       195 ~~~~~~~~~-~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~-~~~~v~~~~~  270 (416)
T 2pm9_A          195 LKAKKEVIH-LSYTSP--NSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQG-HQKGILSLDW  270 (416)
T ss_dssp             TTTTEEEEE-ECCCCC--SSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSC-CSSCEEEEEE
T ss_pred             CCCCCcceE-Eecccc--ccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecC-ccCceeEEEe
Confidence            988543111 110000  00115679999999997 5788888888   9999999986 5667776 5 9999999999


Q ss_pred             cC-CCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCC-CEEEEEeCCCcEEEEEcCCCcc-c---c-
Q 004969          602 SN-HSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDD-HYLLGKGSGTSMFVQSLRGDPF-R---D-  673 (721)
Q Consensus       602 sP-dg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg-~~Lasgs~Dg~I~VWDl~g~~l-~---~-  673 (721)
                      +| ++ .++++++.||+|++||+++++.  +..+.+|...+ +++|+|++ .+|++++.|+.|++|++..... .   . 
T Consensus       271 s~~~~-~~l~s~~~dg~v~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~  347 (416)
T 2pm9_A          271 CHQDE-HLLLSSGRDNTVLLWNPESAEQ--LSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQET  347 (416)
T ss_dssp             CSSCS-SCEEEEESSSEEEEECSSSCCE--EEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC---
T ss_pred             CCCCC-CeEEEEeCCCCEEEeeCCCCcc--ceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccc
Confidence            99 66 8999999999999999998854  55666777766 89999999 8999999999999999973221 0   0 


Q ss_pred             ----------------------------------cccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          674 ----------------------------------FNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       674 ----------------------------------~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                                                        +...+.+++|+|++       .+||+|+..
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-------~~la~~~~d  404 (416)
T 2pm9_A          348 ETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGG-------KLVQITPDG  404 (416)
T ss_dssp             -------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTT-------EEECBCTTS
T ss_pred             cccccCCcccccccccccccccccccccccCCccccCCccceEEeeCC-------eEEEEeCCC
Confidence                                              34566788999999       899999865

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2e-25  Score=255.04  Aligned_cols=218  Identities=9%  Similarity=0.075  Sum_probs=175.1

Q ss_pred             CeEEEEEeCC-----CCCEEEEEECCCeEEEEECCCCeEE-----------EEeecCCCCCCeEEEEEeeCCCCEEEEEe
Q 004969          455 RPRQFEYHPS-----ISCLMVFGTLDGEIVVVNHENENIV-----------SYIPSFGAMNSVLGLCWLKKYPSKLIAGS  518 (721)
Q Consensus       455 ~V~~lafsP~-----dg~~LasGs~DG~I~IWdl~tg~~i-----------~~l~~~~H~~~V~sl~fsp~d~~~LaSgs  518 (721)
                      .|++++|+|.     ++.+||+|+.||+|+|||+.++...           ..+.  +|...|++++|++  +..|++|+
T Consensus       209 ~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~--~h~~~v~sv~~s~--~~~lasgs  284 (524)
T 2j04_B          209 EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS--LADSLITTFDFLS--PTTVVCGF  284 (524)
T ss_dssp             SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC--CTTTCEEEEEESS--SSEEEEEE
T ss_pred             cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE--cCCCCEEEEEecC--CCeEEEEe
Confidence            4899999993     2579999999999999999876421           2333  7899999999984  35899999


Q ss_pred             CCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEE--EEecCC-CEEEEEeCCCcEEEEECCCCcEEEEEccccCC-
Q 004969          519 DNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSV--HVNSMD-ELFLASGYSKNIALYDINSGRRLQVFADMHKE-  594 (721)
Q Consensus       519 ~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv--~~sp~~-~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~-  594 (721)
                      .||+|++||++++....        .....|...|.++  .|++++ ..+++++.|++|+|||+++++.+..+.+ |.. 
T Consensus       285 ~DgtV~lWD~~~~~~~~--------~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~-~~~~  355 (524)
T 2j04_B          285 KNGFVAEFDLTDPEVPS--------FYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVS-RFRG  355 (524)
T ss_dssp             TTSEEEEEETTBCSSCS--------EEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEE-ECSC
T ss_pred             CCCEEEEEECCCCCCce--------EEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccc-cccc
Confidence            99999999998753311        1122466789999  466666 7899999999999999999887777765 543 


Q ss_pred             -CeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCccc
Q 004969          595 -HINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDPFR  672 (721)
Q Consensus       595 -~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~  672 (721)
                       .|.+++|+|++ ..+++++.|++|++||++++.+.  ..+.+|.+.+ +++|+|+|++|++|+.||+|++||+.++.+.
T Consensus       356 ~~v~~v~fsp~~-~~l~s~~~d~tv~lwd~~~~~~~--~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~  432 (524)
T 2j04_B          356 SNLVPVVYCPQI-YSYIYSDGASSLRAVPSRAAFAV--HPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLH  432 (524)
T ss_dssp             CSCCCEEEETTT-TEEEEECSSSEEEEEETTCTTCC--EEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTT
T ss_pred             CcccceEeCCCc-CeEEEeCCCCcEEEEECcccccc--eeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhcc
Confidence             58899999998 68999999999999999997653  3455677777 9999999999999999999999999866555


Q ss_pred             cccc--------CeEEEEECCCCC
Q 004969          673 DFNM--------SILAAYTRPSSK  688 (721)
Q Consensus       673 ~~~~--------~V~~v~fsP~~~  688 (721)
                      .+..        .+..++|+|++.
T Consensus       433 ~~~~~~~~~~~~~v~~v~~sp~g~  456 (524)
T 2j04_B          433 GIKNSSATQKSLRLWKWDYSIKDD  456 (524)
T ss_dssp             CC------CCCCEEEECBCCSSSC
T ss_pred             ccccCccceeeeEEEEeccCCCCC
Confidence            4421        467899999983

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.93  E-value=1.2e-23  Score=233.43  Aligned_cols=229  Identities=16%  Similarity=0.245  Sum_probs=186.7

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEee-CCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLK-KYPSKLIAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp-~d~~~LaSgs~DGtVrIWDi~~~~~  533 (721)
                      .|++++|+| ++ ++++|+.||+|++||+.+++.+..+.  +|...|.+++|++ +++.++++|+.||+|++||+.++..
T Consensus       164 ~V~~l~~~~-~~-~l~s~s~dg~i~vwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~  239 (464)
T 3v7d_B          164 GVWALKYAH-GG-ILVSGSTDRTVRVWDIKKGCCTHVFE--GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS  239 (464)
T ss_dssp             CEEEEEECS-TT-EEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCC
T ss_pred             CEEEEEEcC-CC-EEEEEeCCCCEEEEECCCCcEEEEEC--CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcc
Confidence            699999999 55 99999999999999999999988887  8999999999986 4668999999999999999998654


Q ss_pred             cccccccC------------c--ceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEE
Q 004969          534 SIRGMHYG------------A--GTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVV  599 (721)
Q Consensus       534 ~~~~~~~~------------~--~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI  599 (721)
                      ........            .  ......|...|.++  ++++..+++++.||.|++||+++++.+..+.+ |...|.++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~  316 (464)
T 3v7d_B          240 VPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG-HTDRIYST  316 (464)
T ss_dssp             C------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEE
T ss_pred             cccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCCCEEEE
Confidence            21110000            0  11122344566666  46889999999999999999999999999987 99999999


Q ss_pred             EEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCc--cc-ccc
Q 004969          600 KFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDP--FR-DFN  675 (721)
Q Consensus       600 ~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~--l~-~~~  675 (721)
                      +|+|++ ..+++|+.||+|++||+++++  .+..+.+|...+ +++|+  +.++++|+.||.|++||++...  .. .+.
T Consensus       317 ~~~~~~-~~l~sg~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~  391 (464)
T 3v7d_B          317 IYDHER-KRCISASMDTTIRIWDLENGE--LMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHT  391 (464)
T ss_dssp             EEETTT-TEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECT
T ss_pred             EEcCCC-CEEEEEeCCCcEEEEECCCCc--EEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCC
Confidence            999999 799999999999999999884  466777888877 78886  6899999999999999998322  11 234


Q ss_pred             cCeEEEEECCCCCcccccccEEEEecC
Q 004969          676 MSILAAYTRPSSKSEIVKVNLLASTDH  702 (721)
Q Consensus       676 ~~V~~v~fsP~~~~~~v~v~lLASgs~  702 (721)
                      ..+..+.|+|++       .++++|+.
T Consensus       392 ~~~~~~~~~~~~-------~~l~~~~d  411 (464)
T 3v7d_B          392 NLSAITTFYVSD-------NILVSGSE  411 (464)
T ss_dssp             TCCCEEEEEECS-------SEEEEEET
T ss_pred             CCccEEEEEeCC-------CEEEEecC
Confidence            567778999999       88888873

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.93  E-value=4.1e-24  Score=228.05  Aligned_cols=205  Identities=13%  Similarity=0.170  Sum_probs=166.7

Q ss_pred             CeEEEEEeCC-CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCC-CCEEEEEeCCCeEEEEEcCCCC
Q 004969          455 RPRQFEYHPS-ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKY-PSKLIAGSDNGSLKLYDIRHMP  532 (721)
Q Consensus       455 ~V~~lafsP~-dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d-~~~LaSgs~DGtVrIWDi~~~~  532 (721)
                      .|++++|+|. ++.+|++|+.||.|++||+.+++........+|...|.+++|+|.. +.++++++.||.|++||+....
T Consensus        57 ~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~  136 (379)
T 3jrp_A           57 PVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG  136 (379)
T ss_dssp             CEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTS
T ss_pred             cEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCC
Confidence            5999999972 2899999999999999999998733333334889999999999432 8899999999999999998864


Q ss_pred             CcccccccCcceeEeccCCCeEEEEEec-------------CCCEEEEEeCCCcEEEEECCCCc----EEEEEccccCCC
Q 004969          533 PSIRGMHYGAGTVTFDEFDQLTSVHVNS-------------MDELFLASGYSKNIALYDINSGR----RLQVFADMHKEH  595 (721)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp-------------~~~~lls~g~Dg~IrlWDl~s~~----~v~~l~~~h~~~  595 (721)
                      ..       .......|...|.+++|+|             ++..+++++.||.|++||++++.    .+..+.+ |...
T Consensus       137 ~~-------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-h~~~  208 (379)
T 3jrp_A          137 TT-------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG-HSDW  208 (379)
T ss_dssp             CC-------CEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECC-CSSC
T ss_pred             ce-------eeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEec-ccCc
Confidence            31       1122335667899999999             58999999999999999998764    4456665 9999


Q ss_pred             eEEEEEcCCC--CcEEEEEECCCcEEEEECCCCCce---eEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          596 INVVKFSNHS--PSIFATSSFDQDVKLWDLRQKPIQ---PCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       596 V~sI~fsPdg--~~lLaSgs~DgtIrIWDlrs~~~~---~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                      |.+++|+|++  +.++++++.||.|++||++++...   .......+...+ +++|+|+|++|++++.||.|++|++.
T Consensus       209 v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~  286 (379)
T 3jrp_A          209 VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  286 (379)
T ss_dssp             EEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred             EeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence            9999999993  389999999999999999986422   222223355555 89999999999999999999999987

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.93  E-value=5.8e-25  Score=235.45  Aligned_cols=220  Identities=10%  Similarity=0.054  Sum_probs=170.3

Q ss_pred             CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccC-cc
Q 004969          465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYG-AG  543 (721)
Q Consensus       465 dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~-~~  543 (721)
                      ++.++++|+.||+|++||+.+++.+..+.    ...|.++.|+| .   +++++.|++|++|+.............. ..
T Consensus        47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~----~~~v~~~~~~~-~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~  118 (343)
T 3lrv_A           47 DKWVCMCRCEDGALHFTQLKDSKTITTIT----TPNPRTGGEHP-A---IISRGPCNRLLLLYPGNQITILDSKTNKVLR  118 (343)
T ss_dssp             EEEEEEEEEETTEEEEEEESSSSCEEEEE----EECCCTTCCCC-S---EEEECSTTEEEEEETTTEEEEEETTTCCEEE
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEEEEEe----cCCceeeeeCC-c---eEEecCCCeEEEEEccCceEEeecCCcceeE
Confidence            67899999999999999999999888776    35677888874 3   9999999999999887522111111111 11


Q ss_pred             eeEeccCCCeEEEEEec--CCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEE
Q 004969          544 TVTFDEFDQLTSVHVNS--MDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLW  621 (721)
Q Consensus       544 ~~~~~~~~~V~sv~~sp--~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIW  621 (721)
                      .....|..+|.+++|+|  ++..+++++.||+|++||+++++.+......|...+.+++|+|++ .++++|+.||.|++|
T Consensus       119 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg-~~lasg~~dg~i~iw  197 (343)
T 3lrv_A          119 EIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDS-LLLALYSPDGILDVY  197 (343)
T ss_dssp             EEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTS-CEEEEECTTSCEEEE
T ss_pred             EeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCC-CEEEEEcCCCEEEEE
Confidence            22234557799999999  999999999999999999999999877765467789999999999 899999999999999


Q ss_pred             ECCCCCceeEEEecC-CCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCC-cc---cc---cccCeE--EEEECCCCCcc
Q 004969          622 DLRQKPIQPCYTASS-SKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGD-PF---RD---FNMSIL--AAYTRPSSKSE  690 (721)
Q Consensus       622 Dlrs~~~~~~~~~~~-~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~-~l---~~---~~~~V~--~v~fsP~~~~~  690 (721)
                      |+++++.. ...+.. |...+ +++|+|+|.+|++++ ++.|++||++.. ..   ..   +...+.  +++|+|++   
T Consensus       198 d~~~~~~~-~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---  272 (343)
T 3lrv_A          198 NLSSPDQA-SSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSG---  272 (343)
T ss_dssp             ESSCTTSC-CEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTS---
T ss_pred             ECCCCCCC-ccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCC---
Confidence            99998653 134555 77777 999999999999999 559999999832 22   22   113333  59999999   


Q ss_pred             cccccEEEEecC
Q 004969          691 IVKVNLLASTDH  702 (721)
Q Consensus       691 ~v~v~lLASgs~  702 (721)
                          ..|++|+.
T Consensus       273 ----~~l~~~s~  280 (343)
T 3lrv_A          273 ----KNMIAYSN  280 (343)
T ss_dssp             ----SEEEEEET
T ss_pred             ----CEEEEecC
Confidence                88888665

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.93  E-value=1.2e-24  Score=231.10  Aligned_cols=228  Identities=12%  Similarity=0.185  Sum_probs=182.7

Q ss_pred             CeEEEEEeCC---CCCEEEEEECCCeEEEEECCCCeEEEEeec---CCCCCCeEEEEEeeCC---CCEEEEEeCCCeEEE
Q 004969          455 RPRQFEYHPS---ISCLMVFGTLDGEIVVVNHENENIVSYIPS---FGAMNSVLGLCWLKKY---PSKLIAGSDNGSLKL  525 (721)
Q Consensus       455 ~V~~lafsP~---dg~~LasGs~DG~I~IWdl~tg~~i~~l~~---~~H~~~V~sl~fsp~d---~~~LaSgs~DGtVrI  525 (721)
                      .|++++|+|.   ....+++++.+|.|++||+.+++.+..+..   ..|...|++++|+|..   +.+|++|+.||.|++
T Consensus        20 ~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v   99 (366)
T 3k26_A           20 PLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRI   99 (366)
T ss_dssp             CEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEE
T ss_pred             ceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEE
Confidence            6999999983   356677777778999999998877666553   2367889999999532   569999999999999


Q ss_pred             EEcCCCCCcccccccCcceeEe-ccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCcEEEEE---ccccCCCeEEEE
Q 004969          526 YDIRHMPPSIRGMHYGAGTVTF-DEFDQLTSVHVNS-MDELFLASGYSKNIALYDINSGRRLQVF---ADMHKEHINVVK  600 (721)
Q Consensus       526 WDi~~~~~~~~~~~~~~~~~~~-~~~~~V~sv~~sp-~~~~lls~g~Dg~IrlWDl~s~~~v~~l---~~~h~~~V~sI~  600 (721)
                      ||+.+++.          ...+ .|...|.+++|+| ++..+++++.||.|++||+++++.+..+   .+ |...|.+++
T Consensus       100 ~d~~~~~~----------~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~  168 (366)
T 3k26_A          100 INPITMQC----------IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEG-HRDEVLSAD  168 (366)
T ss_dssp             ECTTTCCE----------EEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTS-CSSCEEEEE
T ss_pred             EEchhceE----------eeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccccc-ccCceeEEE
Confidence            99988653          2223 3667899999999 8899999999999999999999999988   44 999999999


Q ss_pred             EcCCCCcEEEEEECCCcEEEEECCCCCcee--------------------------EEEecCCCCeE-EEEEecCCCEEE
Q 004969          601 FSNHSPSIFATSSFDQDVKLWDLRQKPIQP--------------------------CYTASSSKGNV-MVCFSPDDHYLL  653 (721)
Q Consensus       601 fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~--------------------------~~~~~~~~~~v-sl~fSpdg~~La  653 (721)
                      |+|++ .++++++.||.|++||+++++...                          ......|...+ +++|+  +++++
T Consensus       169 ~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~  245 (366)
T 3k26_A          169 YDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLIL  245 (366)
T ss_dssp             ECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEE
T ss_pred             ECCCC-CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEE
Confidence            99998 799999999999999999753321                          11222356666 89998  78999


Q ss_pred             EEeCCCcEEEEEcCCCc------------------ccccccCeEEEEECCC--CCcccccccEEEEecCC
Q 004969          654 GKGSGTSMFVQSLRGDP------------------FRDFNMSILAAYTRPS--SKSEIVKVNLLASTDHC  703 (721)
Q Consensus       654 sgs~Dg~I~VWDl~g~~------------------l~~~~~~V~~v~fsP~--~~~~~v~v~lLASgs~~  703 (721)
                      +++.||.|++||++...                  +..|...|.+++|+|+  +       .+|++|+..
T Consensus       246 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-------~~l~~~~~d  308 (366)
T 3k26_A          246 SKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQ-------KMLALGNQV  308 (366)
T ss_dssp             EECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTS-------SEEEEECTT
T ss_pred             EEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCC-------cEEEEEecC
Confidence            99999999999987321                  1233456777888888  8       889988776

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.93  E-value=8.8e-24  Score=263.11  Aligned_cols=227  Identities=15%  Similarity=0.172  Sum_probs=194.2

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|++++|+| +++++++|+.||+|++||+.+++.+..+.  +|.+.|++++|+ ++++++++|+.||+|++||+.+++..
T Consensus       617 ~v~~~~~s~-~~~~l~s~~~d~~i~vw~~~~~~~~~~~~--~h~~~v~~~~~s-~~~~~l~s~~~d~~v~vwd~~~~~~~  692 (1249)
T 3sfz_A          617 AVYHACFSQ-DGQRIASCGADKTLQVFKAETGEKLLDIK--AHEDEVLCCAFS-SDDSYIATCSADKKVKIWDSATGKLV  692 (1249)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             cEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCEEEEec--cCCCCEEEEEEe-cCCCEEEEEeCCCeEEEEECCCCceE
Confidence            699999999 99999999999999999999999998887  899999999998 78899999999999999999986541


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSM--DELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS  612 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~--~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg  612 (721)
                               .....|...|.+++|+|+  +..+++++.|+.|++||+++++.+..+.+ |...|.+++|+|++ .++++|
T Consensus       693 ---------~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~-h~~~v~~~~~sp~~-~~l~s~  761 (1249)
T 3sfz_A          693 ---------HTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG-HTNSVNHCRFSPDD-ELLASC  761 (1249)
T ss_dssp             ---------EEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECC-CSSCEEEEEECSST-TEEEEE
T ss_pred             ---------EEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecC-CCCCEEEEEEecCC-CEEEEE
Confidence                     111245678999999994  55788899999999999999999999987 99999999999999 799999


Q ss_pred             ECCCcEEEEECCCCCceeEEE-----------------------------------------------------ecCCCC
Q 004969          613 SFDQDVKLWDLRQKPIQPCYT-----------------------------------------------------ASSSKG  639 (721)
Q Consensus       613 s~DgtIrIWDlrs~~~~~~~~-----------------------------------------------------~~~~~~  639 (721)
                      +.||+|++||++++.......                                                     ..+|..
T Consensus       762 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~  841 (1249)
T 3sfz_A          762 SADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHS  841 (1249)
T ss_dssp             ESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSS
T ss_pred             ECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCC
Confidence            999999999997753221111                                                     113444


Q ss_pred             eE-EEEEecCCCEEEEEeCCCcEEEEEcCCC----cccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          640 NV-MVCFSPDDHYLLGKGSGTSMFVQSLRGD----PFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       640 ~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~----~l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      .+ +++|+|++.++++++.||.|++|++...    .+..|...|.+++|+|++       ..+++++..
T Consensus       842 ~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg-------~~l~s~s~d  903 (1249)
T 3sfz_A          842 TIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDG-------SSFLTASDD  903 (1249)
T ss_dssp             CCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-------SEEEEEETT
T ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCC-------CEEEEEeCC
Confidence            45 8999999999999999999999999833    245677899999999999       888888876

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.93  E-value=4.9e-24  Score=231.61  Aligned_cols=186  Identities=6%  Similarity=0.063  Sum_probs=148.8

Q ss_pred             CCeEEEEEeeCCCCEEEEE--eCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 004969          499 NSVLGLCWLKKYPSKLIAG--SDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIAL  576 (721)
Q Consensus       499 ~~V~sl~fsp~d~~~LaSg--s~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~Irl  576 (721)
                      ..+.+++|+ +++++++++  +.|++|+|||+.+++.          ...+.+...|.+++|+|++..+++++. +.+++
T Consensus       134 ~~~~~v~fS-pDg~~la~as~~~d~~i~iwd~~~~~~----------~~~~~~~~~V~~v~fspdg~~l~s~s~-~~~~~  201 (365)
T 4h5i_A          134 DYTKLVYIS-REGTVAAIASSKVPAIMRIIDPSDLTE----------KFEIETRGEVKDLHFSTDGKVVAYITG-SSLEV  201 (365)
T ss_dssp             CCEEEEEEC-TTSSCEEEEESCSSCEEEEEETTTTEE----------EEEEECSSCCCEEEECTTSSEEEEECS-SCEEE
T ss_pred             cCEEEEEEc-CCCCEEEEEECCCCCEEEEeECCCCcE----------EEEeCCCCceEEEEEccCCceEEeccc-eeEEE
Confidence            447789998 688887654  4789999999998543          344567778999999999999888875 55777


Q ss_pred             EECCCCcEEEEE-ccccCCCeEEEEEcCCCCcEEEEEECCC----cEEEEECCCCCcee--EEEecCCCCeE-EEEEecC
Q 004969          577 YDINSGRRLQVF-ADMHKEHINVVKFSNHSPSIFATSSFDQ----DVKLWDLRQKPIQP--CYTASSSKGNV-MVCFSPD  648 (721)
Q Consensus       577 WDl~s~~~v~~l-~~~h~~~V~sI~fsPdg~~lLaSgs~Dg----tIrIWDlrs~~~~~--~~~~~~~~~~v-sl~fSpd  648 (721)
                      |+..+++.+... ...|...|.+++|+|++ ..+++++.|+    .+++||+.......  ...+.+|...+ +++|+||
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~v~~v~fspdg-~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spd  280 (365)
T 4h5i_A          202 ISTVTGSCIARKTDFDKNWSLSKINFIADD-TVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMK  280 (365)
T ss_dssp             EETTTCCEEEEECCCCTTEEEEEEEEEETT-EEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTT
T ss_pred             EEeccCcceeeeecCCCCCCEEEEEEcCCC-CEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCC
Confidence            777777765433 33488899999999999 7899998887    68899988764322  34566777766 8999999


Q ss_pred             CCEEEEEeCCCcEEEEEcC-CCc----ccccccCeEEEEECCCCCcccccccEEEEecCCC
Q 004969          649 DHYLLGKGSGTSMFVQSLR-GDP----FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCD  704 (721)
Q Consensus       649 g~~Lasgs~Dg~I~VWDl~-g~~----l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~~  704 (721)
                      |++||+|+.|+.|+|||++ +++    +..|...|.+++|+|++       .+|||||...
T Consensus       281 g~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg-------~~laS~S~D~  334 (365)
T 4h5i_A          281 GELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDS-------TYVASVSAAN  334 (365)
T ss_dssp             SCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTS-------CEEEEEETTS
T ss_pred             CCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCC-------CEEEEEeCCC
Confidence            9999999999999999997 443    34678899999999999       9999999873

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.93  E-value=6.3e-25  Score=236.32  Aligned_cols=198  Identities=11%  Similarity=0.056  Sum_probs=154.4

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe---EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN---IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM  531 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~---~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~  531 (721)
                      .|++++|+| ++++|++|+.||+|++||+.++.   ....+.  +|...|++++|+ +++++|++|+.||+|++||++++
T Consensus        57 ~v~~~~~s~-~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~--~~~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~  132 (377)
T 3dwl_C           57 IVTCVDWAP-KSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLL--RLNRAATFVRWS-PNEDKFAVGSGARVISVCYFEQE  132 (377)
T ss_dssp             CEEEEEECT-TTCCEEEEETTSSEEEC------CCCCEEECC--CCSSCEEEEECC-TTSSCCEEEESSSCEEECCC---
T ss_pred             eEEEEEEeC-CCCEEEEEeCCCeEEEEEcCCCCceeeeeEec--ccCCceEEEEEC-CCCCEEEEEecCCeEEEEEECCc
Confidence            699999999 89999999999999999999877   344444  899999999998 68899999999999999999886


Q ss_pred             CCcccccccCcceeEe-c-cCCCeEEEEEecCCCEEEEEeCCCcEEEEECC------------------CCcEEEEEccc
Q 004969          532 PPSIRGMHYGAGTVTF-D-EFDQLTSVHVNSMDELFLASGYSKNIALYDIN------------------SGRRLQVFADM  591 (721)
Q Consensus       532 ~~~~~~~~~~~~~~~~-~-~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~------------------s~~~v~~l~~~  591 (721)
                      ....       ....+ . |...|.+++|+|++..+++++.|+.|++||++                  .++.+..+ + 
T Consensus       133 ~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-  203 (377)
T 3dwl_C          133 NDWW-------VSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-P-  203 (377)
T ss_dssp             --CC-------CCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-C-
T ss_pred             ccce-------eeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-c-
Confidence            5200       01112 2 66789999999999999999999999999985                  34566666 4 


Q ss_pred             cCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCcee--EEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          592 HKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQP--CYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       592 h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~--~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                      |...|.+++|+|++ .++++++.||+|++||++++...+  +..+.+|...+ +++|+|+|++|++|+.++.+ +|+..
T Consensus       204 ~~~~v~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          204 SGGWVHAVGFSPSG-NALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             CSSSEEEEEECTTS-SCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             CCceEEEEEECCCC-CEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence            99999999999999 799999999999999999886521  44556677766 89999999999988765555 77654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.93  E-value=2.6e-24  Score=235.00  Aligned_cols=224  Identities=16%  Similarity=0.270  Sum_probs=176.8

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeE----EEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENI----VSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM  531 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~----i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~  531 (721)
                      ...++++|....++++|+.||.|+||++.....    +..+  .+|.+.|++++|+|.++++|++|+.||+|++||+.++
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~--~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~  114 (402)
T 2aq5_A           37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLV--CGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG  114 (402)
T ss_dssp             SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCB--CCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTT
T ss_pred             CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceE--ecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCC
Confidence            445888884334555688999999999965432    2223  3899999999999548899999999999999999886


Q ss_pred             CCcccccccCcceeEeccCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCcEEEEE--ccccCCCeEEEEEcCCCCcE
Q 004969          532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD-ELFLASGYSKNIALYDINSGRRLQVF--ADMHKEHINVVKFSNHSPSI  608 (721)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~-~~lls~g~Dg~IrlWDl~s~~~v~~l--~~~h~~~V~sI~fsPdg~~l  608 (721)
                      ...... . ........|...|.+++|+|++ ..+++++.||.|++||+++++.+..+  .+ |...|.+++|+|++ .+
T Consensus       115 ~~~~~~-~-~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~-~~  190 (402)
T 2aq5_A          115 GLVLPL-R-EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDV-HPDTIYSVDWSRDG-AL  190 (402)
T ss_dssp             CCSSCB-C-SCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTT-CCSCEEEEEECTTS-SC
T ss_pred             CCcccc-C-CceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCC-CCCceEEEEECCCC-CE
Confidence            431100 0 0111223466789999999998 68999999999999999999999999  55 99999999999998 79


Q ss_pred             EEEEECCCcEEEEECCCCCceeEEEe-cCCCCe--EEEEEecCCCEEEEE---eCCCcEEEEEcCC-Cc-cc----cccc
Q 004969          609 FATSSFDQDVKLWDLRQKPIQPCYTA-SSSKGN--VMVCFSPDDHYLLGK---GSGTSMFVQSLRG-DP-FR----DFNM  676 (721)
Q Consensus       609 LaSgs~DgtIrIWDlrs~~~~~~~~~-~~~~~~--vsl~fSpdg~~Lasg---s~Dg~I~VWDl~g-~~-l~----~~~~  676 (721)
                      +++++.||.|++||+++++.  +..+ ..|.+.  .++.|+|++.++++|   +.|+.|++||++. .. +.    .+..
T Consensus       191 l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  268 (402)
T 2aq5_A          191 ICTSCRDKRVRVIEPRKGTV--VAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSS  268 (402)
T ss_dssp             EEEEETTSEEEEEETTTTEE--EEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCS
T ss_pred             EEEEecCCcEEEEeCCCCce--eeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCC
Confidence            99999999999999999754  4444 455543  489999999999999   7899999999983 21 11    3456


Q ss_pred             CeEEEEECCCC
Q 004969          677 SILAAYTRPSS  687 (721)
Q Consensus       677 ~V~~v~fsP~~  687 (721)
                      .+..+.|+|++
T Consensus       269 ~v~~~~~s~~~  279 (402)
T 2aq5_A          269 GVLLPFFDPDT  279 (402)
T ss_dssp             SCEEEEEETTT
T ss_pred             ceeEEEEcCCC
Confidence            79999999999

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.93  E-value=1.5e-24  Score=240.42  Aligned_cols=229  Identities=12%  Similarity=0.123  Sum_probs=175.0

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|++|+|+|.++.+|++|+.||+|++||++++..........+...+.+++|+ +++.+|++|+.||+|++||+++... 
T Consensus       166 ~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~g~~dg~i~~wd~~~~~~-  243 (435)
T 4e54_B          166 SITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVS-ASSRMVVTGDNVGNVILLNMDGKEL-  243 (435)
T ss_dssp             CCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEE-TTTTEEEEECSSSBEEEEESSSCBC-
T ss_pred             CEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEEC-CCCCEEEEEeCCCcEeeeccCccee-
Confidence            69999999978899999999999999999877655555444555678899998 7899999999999999999976321 


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCCcEEEEEc--cccCCCeEEEEEcCCCCcEEEE
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDE-LFLASGYSKNIALYDINSGRRLQVFA--DMHKEHINVVKFSNHSPSIFAT  611 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~-~lls~g~Dg~IrlWDl~s~~~v~~l~--~~h~~~V~sI~fsPdg~~lLaS  611 (721)
                       ..        ...|...|.+++|+|+++ .+++++.|+.|++||+++++....+.  .+|...|++++|+|+| .+|++
T Consensus       244 -~~--------~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg-~~l~s  313 (435)
T 4e54_B          244 -WN--------LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG-ARLLT  313 (435)
T ss_dssp             -CC--------SBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTS-SEEEE
T ss_pred             -EE--------EecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCC-CeeEE
Confidence             11        123567899999999886 56678899999999999876543332  2399999999999999 89999


Q ss_pred             EECCCcEEEEECCCCCceeEEEecCC-----CCeEEEEEecCCCEEEEEeC------------CCcEEEEEcC-CCcc--
Q 004969          612 SSFDQDVKLWDLRQKPIQPCYTASSS-----KGNVMVCFSPDDHYLLGKGS------------GTSMFVQSLR-GDPF--  671 (721)
Q Consensus       612 gs~DgtIrIWDlrs~~~~~~~~~~~~-----~~~vsl~fSpdg~~Lasgs~------------Dg~I~VWDl~-g~~l--  671 (721)
                      |+.||+|++||++++..........+     ...+...|+|++.++++++.            ++.|++||.. |..+  
T Consensus       314 ~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~  393 (435)
T 4e54_B          314 TDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQ  393 (435)
T ss_dssp             EESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEE
T ss_pred             EcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEE
Confidence            99999999999998765332221111     12235678888877776642            3579999987 4332  


Q ss_pred             --cccccCeEEE-EECCCCCcccccccEEEEecC
Q 004969          672 --RDFNMSILAA-YTRPSSKSEIVKVNLLASTDH  702 (721)
Q Consensus       672 --~~~~~~V~~v-~fsP~~~~~~v~v~lLASgs~  702 (721)
                        .+|...|.++ +|||++       .+||+|+.
T Consensus       394 l~~~~~~~v~s~~~fspdg-------~~lasg~d  420 (435)
T 4e54_B          394 LYDPESSGISSLNEFNPMG-------DTLASAMG  420 (435)
T ss_dssp             ECCSSCCCCCCEEEECTTS-------SCEEEECS
T ss_pred             EeCCCCCcEEEEEEECCCC-------CEEEEEcC
Confidence              2445567776 799999       88998864

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.92  E-value=9e-24  Score=223.18  Aligned_cols=219  Identities=18%  Similarity=0.198  Sum_probs=179.9

Q ss_pred             CeEEEEEeCCCCC-EEEEEECCCeEEEEEC-CCCeEEEEeecCC--CCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 004969          455 RPRQFEYHPSISC-LMVFGTLDGEIVVVNH-ENENIVSYIPSFG--AMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH  530 (721)
Q Consensus       455 ~V~~lafsP~dg~-~LasGs~DG~I~IWdl-~tg~~i~~l~~~~--H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~  530 (721)
                      .|++++|+| ++. ++++|+.||.|++||+ .++.. ..+.  +  |...|.+++|+|  ++.+++++.||.|++||+++
T Consensus        58 ~v~~~~~~~-~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~--~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~  131 (342)
T 1yfq_A           58 PLLCCNFID-NTDLQIYVGTVQGEILKVDLIGSPSF-QALT--NNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRN  131 (342)
T ss_dssp             CEEEEEEEE-SSSEEEEEEETTSCEEEECSSSSSSE-EECB--SCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHH
T ss_pred             ceEEEEECC-CCCcEEEEEcCCCeEEEEEeccCCce-Eecc--ccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccc
Confidence            599999999 899 9999999999999999 87765 4444  6  999999999994  89999999999999999986


Q ss_pred             ---------CCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC-CcE-EEEEccccCCCeEEE
Q 004969          531 ---------MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINS-GRR-LQVFADMHKEHINVV  599 (721)
Q Consensus       531 ---------~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s-~~~-v~~l~~~h~~~V~sI  599 (721)
                               ++.          ...+.+...|.+++|++++  +++++.|+.|++||+++ +.. .......|...|.++
T Consensus       132 ~~~~~~~~~~~~----------~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i  199 (342)
T 1yfq_A          132 YGDGVIAVKNLN----------SNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDV  199 (342)
T ss_dssp             HTTBCEEEEESC----------SSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEE
T ss_pred             cccccccccCCe----------eeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEE
Confidence                     332          1123356789999998766  99999999999999998 543 222222388999999


Q ss_pred             EEcC-CCCcEEEEEECCCcEEEEECCCC------CceeEEEecCCCC---------eE-EEEEecCCCEEEEEeCCCcEE
Q 004969          600 KFSN-HSPSIFATSSFDQDVKLWDLRQK------PIQPCYTASSSKG---------NV-MVCFSPDDHYLLGKGSGTSMF  662 (721)
Q Consensus       600 ~fsP-dg~~lLaSgs~DgtIrIWDlrs~------~~~~~~~~~~~~~---------~v-sl~fSpdg~~Lasgs~Dg~I~  662 (721)
                      +|+| ++ .++++|+.||.|++||++..      ..  ...+..|..         .+ +++|+|++++|++++.||.|+
T Consensus       200 ~~~~~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  276 (342)
T 1yfq_A          200 ALLPKEQ-EGYACSSIDGRVAVEFFDDQGDDYNSSK--RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIIS  276 (342)
T ss_dssp             EECSGGG-CEEEEEETTSEEEEEECCTTCCSTTCTT--CEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEE
T ss_pred             EECCCCC-CEEEEEecCCcEEEEEEcCCCccccccc--ceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEE
Confidence            9999 88 79999999999999999876      33  344444432         55 899999999999999999999


Q ss_pred             EEEcC-CCc---cccc-ccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          663 VQSLR-GDP---FRDF-NMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       663 VWDl~-g~~---l~~~-~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      +||+. +..   +..| ...|.+++  |++       .+|++|+..
T Consensus       277 vwd~~~~~~~~~~~~~h~~~v~~~~--~~~-------~~l~s~s~D  313 (342)
T 1yfq_A          277 CWNLQTRKKIKNFAKFNEDSVVKIA--CSD-------NILCLATSD  313 (342)
T ss_dssp             EEETTTTEEEEECCCCSSSEEEEEE--ECS-------SEEEEEEEC
T ss_pred             EEcCccHhHhhhhhcccCCCceEec--CCC-------CeEEEEecC
Confidence            99998 332   4555 67888888  999       899999887

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1.4e-23  Score=233.40  Aligned_cols=223  Identities=10%  Similarity=0.117  Sum_probs=182.2

Q ss_pred             CeEEEEEeCCCCCEE-EEEECCCeEEEEECC--CCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 004969          455 RPRQFEYHPSISCLM-VFGTLDGEIVVVNHE--NENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM  531 (721)
Q Consensus       455 ~V~~lafsP~dg~~L-asGs~DG~I~IWdl~--tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~  531 (721)
                      .|++++|+| ++++| ++|+.||.|+|||+.  +++.+..+....|...|.+++|+ +++.+|++|+.||.|++|++.++
T Consensus       104 ~v~~~~~s~-d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~~~~~~g~v~~~~~~~~  181 (450)
T 2vdu_B          104 YIRNLRLTS-DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIA-EDDTTVIIADKFGDVYSIDINSI  181 (450)
T ss_dssp             CEEEEEECT-TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTSC
T ss_pred             ceEEEEEcC-CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEc-CCCCEEEEEeCCCcEEEEecCCc
Confidence            599999999 88885 899999999999999  88888888755678899999998 78899999999999999999876


Q ss_pred             CCcccccccCcceeEeccCCCeEEEEEecC---CCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcE
Q 004969          532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSM---DELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSI  608 (721)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~---~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~l  608 (721)
                      ......     ......|...|.+++|+|+   +..+++++.|+.|++||+++++.+..+..+|...|.+++|+ ++ .+
T Consensus       182 ~~~~~~-----~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~-~~  254 (450)
T 2vdu_B          182 PEEKFT-----QEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KD-YL  254 (450)
T ss_dssp             CCSSCC-----CCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-ST-TE
T ss_pred             cccccc-----ceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CC-CE
Confidence            542100     0012245678999999999   88999999999999999999998888554499999999999 87 89


Q ss_pred             EEEEECCCcEEEEECCCCCceeEEEec-----------------------CC-CCeEEEEEecCCCEEEEEe-CCCcEEE
Q 004969          609 FATSSFDQDVKLWDLRQKPIQPCYTAS-----------------------SS-KGNVMVCFSPDDHYLLGKG-SGTSMFV  663 (721)
Q Consensus       609 LaSgs~DgtIrIWDlrs~~~~~~~~~~-----------------------~~-~~~vsl~fSpdg~~Lasgs-~Dg~I~V  663 (721)
                      |++|+.|++|++||+++++........                       .. .....++|+|+++++++++ .++.|++
T Consensus       255 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~i  334 (450)
T 2vdu_B          255 LLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIII  334 (450)
T ss_dssp             EEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEE
T ss_pred             EEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEE
Confidence            999999999999999998765444321                       11 2233899999999999998 8999999


Q ss_pred             EEc--C-CC---c---ccccccCeEEEEECCCC
Q 004969          664 QSL--R-GD---P---FRDFNMSILAAYTRPSS  687 (721)
Q Consensus       664 WDl--~-g~---~---l~~~~~~V~~v~fsP~~  687 (721)
                      |++  . +.   .   +.. ...+.+++|+|++
T Consensus       335 w~~~~~~~~~l~~~~~~~~-~~~v~~~~~~~~~  366 (450)
T 2vdu_B          335 LEMSEKQKGDLALKQIITF-PYNVISLSAHNDE  366 (450)
T ss_dssp             EEECSSSTTCEEEEEEEEC-SSCEEEEEEETTE
T ss_pred             EEeccCCCCceeeccEecc-CCceEEEEecCCc
Confidence            999  3 21   1   222 3689999999954

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.92  E-value=1.2e-23  Score=249.53  Aligned_cols=219  Identities=14%  Similarity=0.157  Sum_probs=189.1

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|++++|+| ++++|++|+.||.|++||+.+++.+..+.  +|.+.|++++|+ +++.+|++|+.||+|++||+.++...
T Consensus        57 ~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~--~~~~~v~~~~~s-~~~~~l~~~~~dg~i~vw~~~~~~~~  132 (814)
T 3mkq_A           57 PVRAGKFIA-RKNWIIVGSDDFRIRVFNYNTGEKVVDFE--AHPDYIRSIAVH-PTKPYVLSGSDDLTVKLWNWENNWAL  132 (814)
T ss_dssp             CEEEEEEEG-GGTEEEEEETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEEC-SSSSEEEEEETTSEEEEEEGGGTSEE
T ss_pred             cEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEe--cCCCCEEEEEEe-CCCCEEEEEcCCCEEEEEECCCCceE
Confidence            599999999 99999999999999999999999998887  899999999998 78899999999999999999875321


Q ss_pred             ccccccCcceeEeccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcC--CCCcEEEE
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNS-MDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSN--HSPSIFAT  611 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp-~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsP--dg~~lLaS  611 (721)
                      .        .....|...|.+++|+| ++..+++++.||.|++||+++++....+...+...+.+++|+|  ++ .++++
T Consensus       133 ~--------~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~  203 (814)
T 3mkq_A          133 E--------QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDK-PYMIT  203 (814)
T ss_dssp             E--------EEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTC-CEEEE
T ss_pred             E--------EEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCC-CEEEE
Confidence            1        12224567899999999 7789999999999999999998888888764668999999999  77 79999


Q ss_pred             EECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC-Cc---ccccccCeEEEEECCC
Q 004969          612 SSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG-DP---FRDFNMSILAAYTRPS  686 (721)
Q Consensus       612 gs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g-~~---l~~~~~~V~~v~fsP~  686 (721)
                      |+.||.|++||++++..  ...+.+|...+ +++|+|+|+++++++.||.|++||+.. ..   +..+...+.+++|+|+
T Consensus       204 ~~~dg~i~~~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  281 (814)
T 3mkq_A          204 ASDDLTIKIWDYQTKSC--VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPT  281 (814)
T ss_dssp             ECTTSEEEEEETTTTEE--EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTT
T ss_pred             EeCCCEEEEEECCCCcE--EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccC
Confidence            99999999999998744  55666677766 899999999999999999999999983 33   3444678999999999


Q ss_pred             CC
Q 004969          687 SK  688 (721)
Q Consensus       687 ~~  688 (721)
                      +.
T Consensus       282 ~~  283 (814)
T 3mkq_A          282 GR  283 (814)
T ss_dssp             CG
T ss_pred             CC
Confidence            84

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.92  E-value=6.5e-23  Score=227.43  Aligned_cols=216  Identities=15%  Similarity=0.262  Sum_probs=179.3

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI  535 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~  535 (721)
                      +.++.+++   +++++|+.||+|++||+.+++.+..+.  +|.+.|++++|+ +++ .+++|+.||+|++||+++++.  
T Consensus       125 ~~~~~~~~---~~l~sgs~dg~i~vwd~~~~~~~~~~~--~h~~~V~~l~~~-~~~-~l~s~s~dg~i~vwd~~~~~~--  195 (464)
T 3v7d_B          125 ITCLQFED---NYVITGADDKMIRVYDSINKKFLLQLS--GHDGGVWALKYA-HGG-ILVSGSTDRTVRVWDIKKGCC--  195 (464)
T ss_dssp             EEEEEEET---TEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEEC-STT-EEEEEETTSCEEEEETTTTEE--
T ss_pred             EEEEEECC---CEEEEEcCCCcEEEEECCCCcEEEEEe--CCCcCEEEEEEc-CCC-EEEEEeCCCCEEEEECCCCcE--
Confidence            56777755   799999999999999999999998887  899999999997 444 999999999999999988643  


Q ss_pred             cccccCcceeEe-ccCCCeEEEEEec--CCCEEEEEeCCCcEEEEECCCCcE-----------------------EEEEc
Q 004969          536 RGMHYGAGTVTF-DEFDQLTSVHVNS--MDELFLASGYSKNIALYDINSGRR-----------------------LQVFA  589 (721)
Q Consensus       536 ~~~~~~~~~~~~-~~~~~V~sv~~sp--~~~~lls~g~Dg~IrlWDl~s~~~-----------------------v~~l~  589 (721)
                              ...+ .|...|.+++|++  ++..+++++.||.|++||++++..                       +..+.
T Consensus       196 --------~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (464)
T 3v7d_B          196 --------THVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR  267 (464)
T ss_dssp             --------EEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC
T ss_pred             --------EEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc
Confidence                    2223 3667899999984  668899999999999999997653                       44555


Q ss_pred             cccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC-
Q 004969          590 DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR-  667 (721)
Q Consensus       590 ~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~-  667 (721)
                      + |...|.++  ++++ .++++|+.||.|++||+++++  .+..+.+|...+ +++|+|+++++++|+.||.|++||++ 
T Consensus       268 ~-~~~~v~~~--~~~~-~~l~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~  341 (464)
T 3v7d_B          268 G-HMASVRTV--SGHG-NIVVSGSYDNTLIVWDVAQMK--CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN  341 (464)
T ss_dssp             C-CSSCEEEE--EEET-TEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred             C-ccceEEEE--cCCC-CEEEEEeCCCeEEEEECCCCc--EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence            5 88888887  4566 799999999999999999874  466677777777 89999999999999999999999997 


Q ss_pred             CCc---ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          668 GDP---FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       668 g~~---l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      +..   +..|...|.++.|++         ..|++|+..
T Consensus       342 ~~~~~~~~~h~~~v~~~~~~~---------~~l~s~s~d  371 (464)
T 3v7d_B          342 GELMYTLQGHTALVGLLRLSD---------KFLVSAAAD  371 (464)
T ss_dssp             TEEEEEECCCSSCEEEEEECS---------SEEEEEETT
T ss_pred             CcEEEEEeCCCCcEEEEEEcC---------CEEEEEeCC
Confidence            433   456678899999974         567777765

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.92  E-value=1.3e-23  Score=219.61  Aligned_cols=209  Identities=12%  Similarity=0.149  Sum_probs=170.7

Q ss_pred             CeEEEEEeCC-CCCEEEEEECCCeEEEEECCCC---------eEEEEeecCCCCCCeEEEEEeeCC--CCEEEEEeCCCe
Q 004969          455 RPRQFEYHPS-ISCLMVFGTLDGEIVVVNHENE---------NIVSYIPSFGAMNSVLGLCWLKKY--PSKLIAGSDNGS  522 (721)
Q Consensus       455 ~V~~lafsP~-dg~~LasGs~DG~I~IWdl~tg---------~~i~~l~~~~H~~~V~sl~fsp~d--~~~LaSgs~DGt  522 (721)
                      .|++++|+|. ++.+|++|+.||+|++||+.++         +.+..+.  +|...|.+++|+ ++  +.++++++.||.
T Consensus        59 ~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~-~~~~~~~l~~~~~dg~  135 (351)
T 3f3f_A           59 SIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLN--DSKGSLYSVKFA-PAHLGLKLACLGNDGI  135 (351)
T ss_dssp             CEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEEC--CCSSCEEEEEEC-CGGGCSEEEEEETTCE
T ss_pred             cEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeec--ccCCceeEEEEc-CCCCCcEEEEecCCCc
Confidence            5999999995 4899999999999999999877         4455665  889999999998 55  889999999999


Q ss_pred             EEEEEcCCCCCccccccc----CcceeEeccCCCeEEEEEecC---CCEEEEEeCCCcEEEEECCCCcE--EEEEccccC
Q 004969          523 LKLYDIRHMPPSIRGMHY----GAGTVTFDEFDQLTSVHVNSM---DELFLASGYSKNIALYDINSGRR--LQVFADMHK  593 (721)
Q Consensus       523 VrIWDi~~~~~~~~~~~~----~~~~~~~~~~~~V~sv~~sp~---~~~lls~g~Dg~IrlWDl~s~~~--v~~l~~~h~  593 (721)
                      |++||+++++........    ........+...+.+++|+|+   +..+++++.|+.+.+|+...++.  +..+.+ |.
T Consensus       136 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~  214 (351)
T 3f3f_A          136 LRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPG-HK  214 (351)
T ss_dssp             EEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCC-CC
T ss_pred             EEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCC-CC
Confidence            999999887652111100    000111135567999999997   89999999999998888887765  566665 99


Q ss_pred             CCeEEEEEcCCCC---cEEEEEECCCcEEEEECCCCC-------------------------------------------
Q 004969          594 EHINVVKFSNHSP---SIFATSSFDQDVKLWDLRQKP-------------------------------------------  627 (721)
Q Consensus       594 ~~V~sI~fsPdg~---~lLaSgs~DgtIrIWDlrs~~-------------------------------------------  627 (721)
                      ..|++++|+|+++   .++++|+.||.|++||++++.                                           
T Consensus       215 ~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (351)
T 3f3f_A          215 SLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNL  294 (351)
T ss_dssp             SCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSE
T ss_pred             cceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccc
Confidence            9999999999974   699999999999999998742                                           


Q ss_pred             -ceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          628 -IQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       628 -~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                       ...+..+.+|...+ +++|+|++++|++|+.||.|++|++.
T Consensus       295 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~  336 (351)
T 3f3f_A          295 QVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKAT  336 (351)
T ss_dssp             EEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             cccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecC
Confidence             13455667777777 89999999999999999999999998

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.92  E-value=2.8e-24  Score=236.57  Aligned_cols=229  Identities=17%  Similarity=0.205  Sum_probs=180.6

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECC---CCeEEEEee--------cCC--CCCCeEEEEEee-CCCCEEEEEeCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHE---NENIVSYIP--------SFG--AMNSVLGLCWLK-KYPSKLIAGSDN  520 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~---tg~~i~~l~--------~~~--H~~~V~sl~fsp-~d~~~LaSgs~D  520 (721)
                      .|++++|+| ++.++++|+.||+|++||+.   +++......        ...  +...+.++.+.. +++.++++|+.|
T Consensus       113 ~v~~~~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  191 (437)
T 3gre_A          113 TVTQITMIP-NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNL  191 (437)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETT
T ss_pred             CEEEEEEeC-CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCC
Confidence            699999999 99999999999999999994   555444332        112  566777777431 567899999999


Q ss_pred             CeEEEEEcCCCCCcccccccCcceeEec---cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeE
Q 004969          521 GSLKLYDIRHMPPSIRGMHYGAGTVTFD---EFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHIN  597 (721)
Q Consensus       521 GtVrIWDi~~~~~~~~~~~~~~~~~~~~---~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~  597 (721)
                      |+|++||+++++.          ...+.   |...|++++|+|++..+++++.||.|++||+++++.+..+...|...|.
T Consensus       192 ~~i~iwd~~~~~~----------~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~  261 (437)
T 3gre_A          192 SRVIIFDIRTLER----------LQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPIT  261 (437)
T ss_dssp             SEEEEEETTTCCE----------EEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEE
T ss_pred             CeEEEEeCCCCee----------eEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceE
Confidence            9999999988654          22222   5678999999999999999999999999999999999988633888999


Q ss_pred             EEEEcC----CCCcEEEEEECCCcEEEEECCCCCceeEEEec----------------------C--CCCeE-EEEEecC
Q 004969          598 VVKFSN----HSPSIFATSSFDQDVKLWDLRQKPIQPCYTAS----------------------S--SKGNV-MVCFSPD  648 (721)
Q Consensus       598 sI~fsP----dg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~----------------------~--~~~~v-sl~fSpd  648 (721)
                      +++|+|    ++ .++++|+.||+|++||++++++...+...                      +  |...+ +++|+ +
T Consensus       262 ~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~  339 (437)
T 3gre_A          262 HVEVCQFYGKNS-VIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-N  339 (437)
T ss_dssp             EEEECTTTCTTE-EEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-T
T ss_pred             EEEeccccCCCc-cEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-C
Confidence            997765    45 69999999999999999987654333311                      1  33334 78999 7


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCc----ccc-------------------------------------cccCeEEEEECCC-
Q 004969          649 DHYLLGKGSGTSMFVQSLRGDP----FRD-------------------------------------FNMSILAAYTRPS-  686 (721)
Q Consensus       649 g~~Lasgs~Dg~I~VWDl~g~~----l~~-------------------------------------~~~~V~~v~fsP~-  686 (721)
                      +++|++|+.|+.|++||+....    +..                                     |...|.+++|+|+ 
T Consensus       340 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~  419 (437)
T 3gre_A          340 DKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVD  419 (437)
T ss_dssp             TEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESS
T ss_pred             ceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccC
Confidence            8999999999999999987321    222                                     6678899999888 


Q ss_pred             -CCcccccccEEEEecCC
Q 004969          687 -SKSEIVKVNLLASTDHC  703 (721)
Q Consensus       687 -~~~~~v~v~lLASgs~~  703 (721)
                       +       .+|++|+..
T Consensus       420 ~~-------~~l~s~~~d  430 (437)
T 3gre_A          420 ET-------PLLVACDNS  430 (437)
T ss_dssp             SS-------EEEEEEETT
T ss_pred             Cc-------eEEEEEcCC
Confidence             5       899999876

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.92  E-value=4.4e-24  Score=226.65  Aligned_cols=204  Identities=16%  Similarity=0.164  Sum_probs=160.1

Q ss_pred             CeEEEEEeC-CCCCEEEEEECCCeEEEEECCCCe--EEEEeecCCCCCCeEEEEEeeCC-CCEEEEEeCCCeEEEEEcCC
Q 004969          455 RPRQFEYHP-SISCLMVFGTLDGEIVVVNHENEN--IVSYIPSFGAMNSVLGLCWLKKY-PSKLIAGSDNGSLKLYDIRH  530 (721)
Q Consensus       455 ~V~~lafsP-~dg~~LasGs~DG~I~IWdl~tg~--~i~~l~~~~H~~~V~sl~fsp~d-~~~LaSgs~DGtVrIWDi~~  530 (721)
                      .|++++|+| .++++|++|+.||+|++||+.++.  ....+.  +|...|.+++|+|.. +.+|++|+.||+|++||+..
T Consensus        59 ~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~--~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~  136 (316)
T 3bg1_A           59 PVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHA--GHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTG  136 (316)
T ss_dssp             CEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEEC--CCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECS
T ss_pred             cEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEcc--CCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCC
Confidence            599999986 248999999999999999999874  444444  899999999999542 78999999999999999987


Q ss_pred             CCCcccccccCcceeEeccCCCeEEEEEecC-----------------CCEEEEEeCCCcEEEEECCCC---cEEEEEcc
Q 004969          531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSM-----------------DELFLASGYSKNIALYDINSG---RRLQVFAD  590 (721)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~-----------------~~~lls~g~Dg~IrlWDl~s~---~~v~~l~~  590 (721)
                      +..... .     .....|...|.+++|+|+                 +..+++++.|++|++||++.+   +.+..+.+
T Consensus       137 ~~~~~~-~-----~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~  210 (316)
T 3bg1_A          137 EGQWEV-K-----KINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEA  210 (316)
T ss_dssp             SSCEEE-C-----CBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBC
T ss_pred             CCCcce-e-----eeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeeccc
Confidence            532100 0     001124456788899886                 368899999999999999865   45667776


Q ss_pred             ccCCCeEEEEEcCCC---CcEEEEEECCCcEEEEECCCCCc--eeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEE
Q 004969          591 MHKEHINVVKFSNHS---PSIFATSSFDQDVKLWDLRQKPI--QPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQ  664 (721)
Q Consensus       591 ~h~~~V~sI~fsPdg---~~lLaSgs~DgtIrIWDlrs~~~--~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VW  664 (721)
                       |...|.+++|+|++   ..+|++|+.|++|++||+++...  .....+..|...+ +++|+|+|++|++++.|+.|++|
T Consensus       211 -h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw  289 (316)
T 3bg1_A          211 -HSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLW  289 (316)
T ss_dssp             -CSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEE
T ss_pred             -CCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEE
Confidence             99999999999985   36899999999999999986211  0111223445555 99999999999999999999999


Q ss_pred             EcC
Q 004969          665 SLR  667 (721)
Q Consensus       665 Dl~  667 (721)
                      +..
T Consensus       290 ~~~  292 (316)
T 3bg1_A          290 KES  292 (316)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            976

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.92  E-value=3.8e-23  Score=226.12  Aligned_cols=220  Identities=16%  Similarity=0.231  Sum_probs=181.0

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .+.+++|++   ..+++++.||.|++||+.+++....+.. .|...|++++|+ +++.+|++|+.||.|++||+.+++..
T Consensus        95 ~~~~~~~s~---~~l~~~~~d~~v~lw~~~~~~~~~~~~~-~~~~~v~~v~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~  169 (401)
T 4aez_A           95 YLNLLDWSN---LNVVAVALERNVYVWNADSGSVSALAET-DESTYVASVKWS-HDGSFLSVGLGNGLVDIYDVESQTKL  169 (401)
T ss_dssp             TCBCEEECT---TSEEEEEETTEEEEEETTTCCEEEEEEC-CTTCCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             eEEEEeecC---CCEEEEECCCeEEEeeCCCCcEeEeeec-CCCCCEEEEEEC-CCCCEEEEECCCCeEEEEECcCCeEE
Confidence            467788887   4578888999999999999998887764 488999999998 68999999999999999999886531


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC-CCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDIN-SGRRLQVFADMHKEHINVVKFSNHSPSIFATSS  613 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~-s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs  613 (721)
                       .        ....|...|.+++|  ++..+++++.||.|++||++ .+..+..+.+ |...|.+++|+|++ .++++|+
T Consensus       170 -~--------~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~-~~l~s~~  236 (401)
T 4aez_A          170 -R--------TMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQG-HSSEVCGLAWRSDG-LQLASGG  236 (401)
T ss_dssp             -E--------EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEEC-CSSCEEEEEECTTS-SEEEEEE
T ss_pred             -E--------EecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcC-CCCCeeEEEEcCCC-CEEEEEe
Confidence             1        11245678999999  46799999999999999999 5667777876 99999999999998 8999999


Q ss_pred             CCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCC-EEEEEe--CCCcEEEEEcC-CCcccc--cccCeEEEEECCC
Q 004969          614 FDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDH-YLLGKG--SGTSMFVQSLR-GDPFRD--FNMSILAAYTRPS  686 (721)
Q Consensus       614 ~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~-~Lasgs--~Dg~I~VWDl~-g~~l~~--~~~~V~~v~fsP~  686 (721)
                      .||.|++||++++..  ...+..|...+ +++|+|++. ++++|+  .|+.|++||++ +..+..  +...+.++.|+|+
T Consensus       237 ~d~~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~  314 (401)
T 4aez_A          237 NDNVVQIWDARSSIP--KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPH  314 (401)
T ss_dssp             TTSCEEEEETTCSSE--EEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSS
T ss_pred             CCCeEEEccCCCCCc--cEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCC
Confidence            999999999998744  55666777777 999999775 555554  69999999997 444333  3568999999999


Q ss_pred             CCcccccccEEEEec
Q 004969          687 SKSEIVKVNLLASTD  701 (721)
Q Consensus       687 ~~~~~v~v~lLASgs  701 (721)
                      +       ..+++++
T Consensus       315 ~-------~~l~~~~  322 (401)
T 4aez_A          315 S-------KEIMSTH  322 (401)
T ss_dssp             S-------SEEEEEE
T ss_pred             C-------CeEEEEe
Confidence            9       7777754

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.92  E-value=2e-24  Score=236.69  Aligned_cols=225  Identities=13%  Similarity=0.090  Sum_probs=165.1

Q ss_pred             eCCCCCEEEEEECCCeEEEEECCCCeEEEEe---ecCCCCCCeEEEEEee-------CCCCEEEEEeCCCeEEEEEcCCC
Q 004969          462 HPSISCLMVFGTLDGEIVVVNHENENIVSYI---PSFGAMNSVLGLCWLK-------KYPSKLIAGSDNGSLKLYDIRHM  531 (721)
Q Consensus       462 sP~dg~~LasGs~DG~I~IWdl~tg~~i~~l---~~~~H~~~V~sl~fsp-------~d~~~LaSgs~DGtVrIWDi~~~  531 (721)
                      .|.++.++++|+.|++|+|||..++......   ...+|.+.|++|+|+|       .++++|+|||.|++|+|||+.++
T Consensus        97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~  176 (393)
T 4gq1_A           97 SPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE  176 (393)
T ss_dssp             CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT
T ss_pred             cCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC
Confidence            3337789999999999999999988764422   2358999999999986       26789999999999999999875


Q ss_pred             CCcccccccCcceeEeccCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCCcEEEEEc---------------------
Q 004969          532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDE-LFLASGYSKNIALYDINSGRRLQVFA---------------------  589 (721)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~-~lls~g~Dg~IrlWDl~s~~~v~~l~---------------------  589 (721)
                      .+         ....+.|..+|.+++|+|++. .+++++.|++|++||+++++......                     
T Consensus       177 ~~---------~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  247 (393)
T 4gq1_A          177 GP---------ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNT  247 (393)
T ss_dssp             EE---------EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC--
T ss_pred             ce---------eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceee
Confidence            43         233556778899999999885 68888899999999999876543221                     


Q ss_pred             ---cccCCCeEEEEEc-CCCCcEEEEEECCCcEEEEECCCCCceeEEE-----------------ecCCCCeEEEEEec-
Q 004969          590 ---DMHKEHINVVKFS-NHSPSIFATSSFDQDVKLWDLRQKPIQPCYT-----------------ASSSKGNVMVCFSP-  647 (721)
Q Consensus       590 ---~~h~~~V~sI~fs-Pdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~-----------------~~~~~~~vsl~fSp-  647 (721)
                         .+|...+.++.|. |++ ..+++++.|+++++||++.++......                 ...+...+...|+| 
T Consensus       248 ~~~~~~~~~v~~v~~~~~dg-~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (393)
T 4gq1_A          248 CHSSGIASSLANVRWIGSDG-SGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPR  326 (393)
T ss_dssp             ----CCSSSCSEEEEETTTT-CEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSS
T ss_pred             eecccccccceeeeeecCCC-CEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccC
Confidence               1377788899987 677 899999999999999998764321110                 11111112234544 


Q ss_pred             -CCCEEEEEeCCCcEEEEEcC-CCc---ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          648 -DDHYLLGKGSGTSMFVQSLR-GDP---FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       648 -dg~~Lasgs~Dg~I~VWDl~-g~~---l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                       ++.++++|+.||.|++||+. +..   ...|..+|.+++|||++       .+||+++..
T Consensus       327 ~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG-------~~LA~as~~  380 (393)
T 4gq1_A          327 YMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDG-------SHLAIATEG  380 (393)
T ss_dssp             CTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTS-------SEEEEEESS
T ss_pred             CCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCC-------CEEEEEeCC
Confidence             44567788899999999987 333   34567799999999999       999999865

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.92  E-value=8.8e-23  Score=212.94  Aligned_cols=201  Identities=12%  Similarity=0.165  Sum_probs=163.5

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeec---------------------------------------C
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPS---------------------------------------F  495 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~---------------------------------------~  495 (721)
                      .|++++|+| +++++++|+.||+|++||+++++.+..+..                                       .
T Consensus        69 ~V~~v~~~~-~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~  147 (318)
T 4ggc_A           69 YISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS  147 (318)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred             eEEEEEECC-CCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEc
Confidence            599999999 999999999999999999998887665542                                       1


Q ss_pred             CCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEE---EEeCCC
Q 004969          496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFL---ASGYSK  572 (721)
Q Consensus       496 ~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~ll---s~g~Dg  572 (721)
                      +|...+..+.|. +++.++++++.||+|++||+.+++.....     ......+...|.++.+++.+..++   +++.++
T Consensus       148 ~~~~~~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  221 (318)
T 4ggc_A          148 GHSQEVCGLRWA-PDGRHLASGGNDNLVNVWPSAPGEGGWVP-----LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR  221 (318)
T ss_dssp             CCSSCEEEEEEC-TTSSEEEEEETTSCEEEEESSCBTTBSCC-----SEEECCCCSCEEEEEECTTSTTEEEEEECTTTC
T ss_pred             CccCceEEEEEc-CCCCEEEEEecCcceeEEECCCCcccccc-----eeeecccCCceEEEEecCCCCcEEEEEecCCCC
Confidence            566777788886 67889999999999999999876542111     122334556789999998876554   334589


Q ss_pred             cEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE--ECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCC
Q 004969          573 NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS--SFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDD  649 (721)
Q Consensus       573 ~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg--s~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg  649 (721)
                      +|++||.+.........  +...+..+.|+|++ ..++++  +.|+.|++||+++++.  +..+.+|.+.+ +++|+|+|
T Consensus       222 ~i~lwd~~~~~~~~~~~--~~~~v~~~~~~~~~-~~~~~~sg~~d~~i~iwd~~~~~~--~~~l~gH~~~V~~l~~spdg  296 (318)
T 4ggc_A          222 HIRIWNVCSGACLSAVD--AHSQVCSILWSPHY-KELISGHGFAQNQLVIWKYPTMAK--VAELKGHTSRVLSLTMSPDG  296 (318)
T ss_dssp             EEEEEETTTCCEEEEEE--CSSCEEEEEEETTT-TEEEEEECTTTCCEEEEETTTCCE--EEEECCCSSCEEEEEECTTS
T ss_pred             EEEEEeccccccccccc--ceeeeeeeeecccc-cceEEEEEcCCCEEEEEECCCCcE--EEEEcCCCCCEEEEEEcCCC
Confidence            99999999988877766  78889999999999 455544  3799999999999854  66778888888 89999999


Q ss_pred             CEEEEEeCCCcEEEEEcC
Q 004969          650 HYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       650 ~~Lasgs~Dg~I~VWDl~  667 (721)
                      ++|++|+.||+|+|||+.
T Consensus       297 ~~l~S~s~D~~v~iWd~~  314 (318)
T 4ggc_A          297 ATVASAAADETLRLWRCF  314 (318)
T ss_dssp             SCEEEEETTTEEEEECCS
T ss_pred             CEEEEEecCCeEEEEECC
Confidence            999999999999999986

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.91  E-value=5e-23  Score=234.91  Aligned_cols=229  Identities=16%  Similarity=0.161  Sum_probs=189.7

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCC----eEEEEeecCCCCCC-eEEEEEeeC--CCCEEEEEeCCCeEEEEE
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENE----NIVSYIPSFGAMNS-VLGLCWLKK--YPSKLIAGSDNGSLKLYD  527 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg----~~i~~l~~~~H~~~-V~sl~fsp~--d~~~LaSgs~DGtVrIWD  527 (721)
                      .|.+++|+| +++++++|+ ++.|+|||+.++    +....+.  +|... |++++|+ +  ++++|++|+.||+|++||
T Consensus        20 ~v~~~~~sp-dg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~--~h~~~~v~~~~~s-p~~~~~~l~s~~~dg~v~vw~   94 (615)
T 1pgu_A           20 FTTHLSYDP-TTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFT--GHGSSVVTTVKFS-PIKGSQYLCSGDESGKVIVWG   94 (615)
T ss_dssp             CCCCCEEET-TTTEEEEEE-TTEEEEEECCSSCCSSCSEEEEC--TTTTSCEEEEEEC-SSTTCCEEEEEETTSEEEEEE
T ss_pred             ceeEEEECC-CCCEEEEec-CCeEEEEECCCCCCccccceEEe--cCCCceEEEEEEC-cCCCCCEEEEecCCCEEEEEe
Confidence            589999999 999999998 889999999988    7888877  89999 9999998 6  899999999999999999


Q ss_pred             cCCCCCcccccccCcceeEe-ccCCCeEEEEEecCCCEEEEEeCC----CcEEEEECCCCcEEEEEccccCCCeEEEEEc
Q 004969          528 IRHMPPSIRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYS----KNIALYDINSGRRLQVFADMHKEHINVVKFS  602 (721)
Q Consensus       528 i~~~~~~~~~~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~D----g~IrlWDl~s~~~v~~l~~~h~~~V~sI~fs  602 (721)
                      +.++... .... ......+ .+..+|.+++|+|++..+++++.+    +.|++||  +++.+..+.+ |...|.+++|+
T Consensus        95 ~~~~~~~-~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~-~~~~v~~~~~~  169 (615)
T 1pgu_A           95 WTFDKES-NSVE-VNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSG-HSQRINACHLK  169 (615)
T ss_dssp             EEEEGGG-TEEE-EEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCS-CSSCEEEEEEC
T ss_pred             CCCCccc-cccc-ccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeec-CCccEEEEEEC
Confidence            9754100 0000 0111122 356789999999999999999987    6888888  6778888886 99999999999


Q ss_pred             CCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCC---eE-EEEEecC-CCEEEEEeCCCcEEEEEcC-CCc---c-c
Q 004969          603 NHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKG---NV-MVCFSPD-DHYLLGKGSGTSMFVQSLR-GDP---F-R  672 (721)
Q Consensus       603 Pdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~---~v-sl~fSpd-g~~Lasgs~Dg~I~VWDl~-g~~---l-~  672 (721)
                      |+++.++++++.|+.|++||+++++  ....+.+|..   .+ +++|+|+ +++|++++.||.|++||++ +..   + .
T Consensus       170 ~~~~~~l~~~~~d~~v~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  247 (615)
T 1pgu_A          170 QSRPMRSMTVGDDGSVVFYQGPPFK--FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIED  247 (615)
T ss_dssp             SSSSCEEEEEETTTEEEEEETTTBE--EEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCB
T ss_pred             CCCCcEEEEEeCCCcEEEEeCCCcc--eeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecc
Confidence            9995589999999999999998874  3556677776   56 9999999 9999999999999999987 333   3 3


Q ss_pred             ---ccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          673 ---DFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       673 ---~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                         .|...|.++.|+ ++       ..|++++..
T Consensus       248 ~~~~~~~~v~~~~~~-~~-------~~l~~~~~d  273 (615)
T 1pgu_A          248 DQEPVQGGIFALSWL-DS-------QKFATVGAD  273 (615)
T ss_dssp             TTBCCCSCEEEEEES-SS-------SEEEEEETT
T ss_pred             cccccCCceEEEEEc-CC-------CEEEEEcCC
Confidence               667799999999 88       888888865

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.3e-23  Score=225.03  Aligned_cols=213  Identities=13%  Similarity=0.143  Sum_probs=161.9

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECC---------CCeEEEEeecCCCCCCeEEEEEeeC--CCCEEEEEeCCCeE
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHE---------NENIVSYIPSFGAMNSVLGLCWLKK--YPSKLIAGSDNGSL  523 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~---------tg~~i~~l~~~~H~~~V~sl~fsp~--d~~~LaSgs~DGtV  523 (721)
                      .|.++.|+| +   +++|+.||+|++|+..         +++.+..+.. +|.+.|.+++|+ +  +++++++|+.||+|
T Consensus        78 ~v~~~~~~~-~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~-~~~~~~~l~s~s~dg~i  151 (343)
T 3lrv_A           78 NPRTGGEHP-A---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEV-DSANEIIYMYGH-NEVNTEYFIWADNRGTI  151 (343)
T ss_dssp             CCCTTCCCC-S---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEEC-CCSSCEEEEECC-C---CCEEEEEETTCCE
T ss_pred             CceeeeeCC-c---eEEecCCCeEEEEEccCceEEeecCCcceeEEeec-CCCCCEEEEEcC-CCCCCCEEEEEeCCCcE
Confidence            366778888 3   9999999999999765         5554555443 677899999998 6  78999999999999


Q ss_pred             EEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEE-EEEccccCCCeEEEEEc
Q 004969          524 KLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRL-QVFADMHKEHINVVKFS  602 (721)
Q Consensus       524 rIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v-~~l~~~h~~~V~sI~fs  602 (721)
                      ++||+++++.. .       .....+...|.+++|+|++..+++|+.||.|++||+++++.+ ..+...|...|++++|+
T Consensus       152 ~~wd~~~~~~~-~-------~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs  223 (343)
T 3lrv_A          152 GFQSYEDDSQY-I-------VHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFA  223 (343)
T ss_dssp             EEEESSSSCEE-E-------EECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEEC
T ss_pred             EEEECCCCcEE-E-------EEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEe
Confidence            99999986541 1       011123456899999999999999999999999999999887 77775599999999999


Q ss_pred             CCCCcEEEEEECCCcEEEEECCCCCceeEE-EecCCCCe---EEEEEecCCCEEEEEeC-CCcEEEEEcCCCc--ccccc
Q 004969          603 NHSPSIFATSSFDQDVKLWDLRQKPIQPCY-TASSSKGN---VMVCFSPDDHYLLGKGS-GTSMFVQSLRGDP--FRDFN  675 (721)
Q Consensus       603 Pdg~~lLaSgs~DgtIrIWDlrs~~~~~~~-~~~~~~~~---vsl~fSpdg~~Lasgs~-Dg~I~VWDl~g~~--l~~~~  675 (721)
                      |++ .++++++ |++|++||+++.+..... .+..+...   .+++|+|+|++|++++. |+.+++|++....  ...  
T Consensus       224 ~~g-~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~--  299 (343)
T 3lrv_A          224 DNG-YWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK--  299 (343)
T ss_dssp             TTS-SEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE--
T ss_pred             CCC-CEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe--
Confidence            999 7999999 559999999987543211 11112222   35999999999999998 9999999996321  111  


Q ss_pred             cCeEEEEECC
Q 004969          676 MSILAAYTRP  685 (721)
Q Consensus       676 ~~V~~v~fsP  685 (721)
                      .++..+.|+|
T Consensus       300 ~~~~~~~~~~  309 (343)
T 3lrv_A          300 DEESALCLQS  309 (343)
T ss_dssp             EEEEECCC--
T ss_pred             cCceeEecCc
Confidence            4556677777

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.91  E-value=5.1e-23  Score=227.88  Aligned_cols=204  Identities=18%  Similarity=0.293  Sum_probs=168.9

Q ss_pred             CeEEEEEeCCCCC-EEEEEECCCeEEEEECCCCeE-------EEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEE
Q 004969          455 RPRQFEYHPSISC-LMVFGTLDGEIVVVNHENENI-------VSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLY  526 (721)
Q Consensus       455 ~V~~lafsP~dg~-~LasGs~DG~I~IWdl~tg~~-------i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIW  526 (721)
                      .|++++|+| ++. +|++|+.||.|++|++.++..       ...+.  +|...|.+++|+|.++.+|++++.||.|++|
T Consensus       183 ~v~~l~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~  259 (430)
T 2xyi_A          183 EGYGLSWNP-NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFT--GHTAVVEDVAWHLLHESLFGSVADDQKLMIW  259 (430)
T ss_dssp             CCCCEEECT-TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEEC--CCSSCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred             CeEEEEeCC-CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeec--CCCCCEeeeEEeCCCCCEEEEEeCCCeEEEE
Confidence            588999999 555 999999999999999987322       23333  8899999999996688999999999999999


Q ss_pred             EcCCCCCcccccccCcceeEeccCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCC-CcEEEEEccccCCCeEEEEEcCC
Q 004969          527 DIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDE-LFLASGYSKNIALYDINS-GRRLQVFADMHKEHINVVKFSNH  604 (721)
Q Consensus       527 Di~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~-~lls~g~Dg~IrlWDl~s-~~~v~~l~~~h~~~V~sI~fsPd  604 (721)
                      |++++...      ........|...|++++|+|++. .+++++.||.|++||+++ +.++..+.. |...|.+++|+|+
T Consensus       260 d~~~~~~~------~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~-h~~~v~~i~~sp~  332 (430)
T 2xyi_A          260 DTRNNNTS------KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES-HKDEIFQVQWSPH  332 (430)
T ss_dssp             ETTCSCSS------SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC-CSSCEEEEEECSS
T ss_pred             ECCCCCCC------cceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec-CCCCEEEEEECCC
Confidence            99986310      00111224667899999999887 577888999999999998 567888886 9999999999999


Q ss_pred             CCcEEEEEECCCcEEEEECCCCC------------ceeEEEecCCCCeE-EEEEecCCC-EEEEEeCCCcEEEEEcCC
Q 004969          605 SPSIFATSSFDQDVKLWDLRQKP------------IQPCYTASSSKGNV-MVCFSPDDH-YLLGKGSGTSMFVQSLRG  668 (721)
Q Consensus       605 g~~lLaSgs~DgtIrIWDlrs~~------------~~~~~~~~~~~~~v-sl~fSpdg~-~Lasgs~Dg~I~VWDl~g  668 (721)
                      +..++++++.|+.|++||++...            ...++...+|...+ .++|+|++. ++++++.||.|++|++..
T Consensus       333 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          333 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             CTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred             CCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence            97789999999999999998722            24466677777766 899999999 899999999999999974

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.91  E-value=6.3e-23  Score=228.08  Aligned_cols=226  Identities=15%  Similarity=0.139  Sum_probs=178.8

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe---EEEEeecC------------------------------------
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN---IVSYIPSF------------------------------------  495 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~---~i~~l~~~------------------------------------  495 (721)
                      .+.+++|+| +|++++++ .++.|++||+.+|+   .+..+...                                    
T Consensus         6 p~~~v~~s~-dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            6 PLQNLLTSR-DGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCEEEECS-SSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             cEEEEEecC-CCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            478999999 88866665 57899999999998   55555421                                    


Q ss_pred             ----------------CCCCCeEEEEEeeCCCCEE-EEEeCCCeEEEEEcC--CCCCcccccccCcceeEeccCCCeEEE
Q 004969          496 ----------------GAMNSVLGLCWLKKYPSKL-IAGSDNGSLKLYDIR--HMPPSIRGMHYGAGTVTFDEFDQLTSV  556 (721)
Q Consensus       496 ----------------~H~~~V~sl~fsp~d~~~L-aSgs~DGtVrIWDi~--~~~~~~~~~~~~~~~~~~~~~~~V~sv  556 (721)
                                      +|.+.|++++|+ +++.+| ++|+.||+|++||+.  ++... ..      .....+...|.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~~~~~~dg~v~iwd~~~~~~~~~-~~------~~~~~~~~~v~~~  155 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLT-SDESRLIACADSDKSLLVFDVDKTSKNVL-KL------RKRFCFSKRPNAI  155 (450)
T ss_dssp             ----------------CCCCCEEEEEEC-TTSSEEEEEEGGGTEEEEEEECSSSSSCE-EE------EEEEECSSCEEEE
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEc-CCCCEEEEEECCCCeEEEEECcCCCCcee-ee------eecccCCCCceEE
Confidence                            344479999998 677875 899999999999998  54431 11      1112455779999


Q ss_pred             EEecCCCEEEEEeCCCcEEEEECCCCcEEE----EEccccCCCeEEEEEcCC---CCcEEEEEECCCcEEEEECCCCCce
Q 004969          557 HVNSMDELFLASGYSKNIALYDINSGRRLQ----VFADMHKEHINVVKFSNH---SPSIFATSSFDQDVKLWDLRQKPIQ  629 (721)
Q Consensus       557 ~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~----~l~~~h~~~V~sI~fsPd---g~~lLaSgs~DgtIrIWDlrs~~~~  629 (721)
                      +|+|++..+++++.||.|++||+.+++...    .+.+ |...|.+++|+|+   + .++++|+.|++|++||++++...
T Consensus       156 ~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~-~~l~s~~~d~~i~vwd~~~~~~~  233 (450)
T 2vdu_B          156 SIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILG-HVSMLTDVHLIKDSDGH-QFIITSDRDEHIKISHYPQCFIV  233 (450)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEE-CSSCEEEEEEEECTTSC-EEEEEEETTSCEEEEEESCTTCE
T ss_pred             EEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeec-ccCceEEEEEcCCCCCC-cEEEEEcCCCcEEEEECCCCcee
Confidence            999999999999999999999999876543    5565 9999999999999   7 89999999999999999987653


Q ss_pred             eEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC-CCccccc----------------------------ccCeE
Q 004969          630 PCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR-GDPFRDF----------------------------NMSIL  679 (721)
Q Consensus       630 ~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~l~~~----------------------------~~~V~  679 (721)
                      ..+ ..+|...+ +++|+ ++++|++++.|+.|++||++ ++.+..+                            ...|.
T Consensus       234 ~~~-~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  311 (450)
T 2vdu_B          234 DKW-LFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS  311 (450)
T ss_dssp             EEE-CCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEE
T ss_pred             eee-ecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEE
Confidence            222 45676666 89999 99999999999999999997 3322211                            24688


Q ss_pred             EEEECCCCCcccccccEEEEec
Q 004969          680 AAYTRPSSKSEIVKVNLLASTD  701 (721)
Q Consensus       680 ~v~fsP~~~~~~v~v~lLASgs  701 (721)
                      .++|+|++       ..|++++
T Consensus       312 ~i~~~~~~-------~~l~~~~  326 (450)
T 2vdu_B          312 KIIKSKNL-------PFVAFFV  326 (450)
T ss_dssp             EEEECSSS-------SEEEEEE
T ss_pred             EEEEeCCC-------CEEEEEE
Confidence            99999999       7777776

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.91  E-value=2.2e-22  Score=216.82  Aligned_cols=202  Identities=11%  Similarity=0.152  Sum_probs=167.5

Q ss_pred             cCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeC--CCCEEEEEeCCCeEEEEEcCCC
Q 004969          454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKK--YPSKLIAGSDNGSLKLYDIRHM  531 (721)
Q Consensus       454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~--d~~~LaSgs~DGtVrIWDi~~~  531 (721)
                      ..|++++|+|.++.++++|+.||.|++||+.+++....+.   +...+.++.|+|.  ++.++++++.||.|++||+.++
T Consensus       100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~  176 (408)
T 4a11_B          100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN---FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG  176 (408)
T ss_dssp             SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE---CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS
T ss_pred             CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc---CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc
Confidence            3699999999778899999999999999999999888775   5678999999853  3449999999999999999886


Q ss_pred             CCcccccccCcceeEeccCCCeEEEEEecCCCE-EEEEeCCCcEEEEECCCCc-EEEEEc--------------cccCCC
Q 004969          532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDEL-FLASGYSKNIALYDINSGR-RLQVFA--------------DMHKEH  595 (721)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~-lls~g~Dg~IrlWDl~s~~-~v~~l~--------------~~h~~~  595 (721)
                      ...         .....|...|.+++|+|++.. +++++.||.|++||++++. .+..+.              ..|...
T Consensus       177 ~~~---------~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (408)
T 4a11_B          177 SCS---------HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGK  247 (408)
T ss_dssp             CCC---------EEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSC
T ss_pred             cee---------eeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCc
Confidence            542         111235678999999999984 8889999999999999765 444441              238899


Q ss_pred             eEEEEEcCCCCcEEEEEECCCcEEEEECCCCCc---------------------------------------------ee
Q 004969          596 INVVKFSNHSPSIFATSSFDQDVKLWDLRQKPI---------------------------------------------QP  630 (721)
Q Consensus       596 V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~---------------------------------------------~~  630 (721)
                      |.+++|+|++ .++++++.||.|++||+++++.                                             ..
T Consensus       248 v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~  326 (408)
T 4a11_B          248 VNGLCFTSDG-LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQ  326 (408)
T ss_dssp             EEEEEECTTS-SEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCE
T ss_pred             eeEEEEcCCC-CEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcc
Confidence            9999999998 7999999999999999987532                                             22


Q ss_pred             EEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004969          631 CYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG  668 (721)
Q Consensus       631 ~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g  668 (721)
                      +..+.+|...+ +++|+|++++|++|+.||.|++||++.
T Consensus       327 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~  365 (408)
T 4a11_B          327 ITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSL  365 (408)
T ss_dssp             EEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC
T ss_pred             eeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCC
Confidence            34456677777 899999999999999999999999983

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.91  E-value=1.8e-22  Score=212.63  Aligned_cols=205  Identities=17%  Similarity=0.234  Sum_probs=164.2

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|++++|+| ++.++++|+.||.|++|+...+.......  .+...+..+.++ +.+..+++|+.||.+++||+......
T Consensus        88 ~V~~~~~s~-dg~~l~s~~~d~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~l~s~s~d~~~~~~d~~~~~~~  163 (340)
T 4aow_A           88 FVSDVVISS-DGQFALSGSWDGTLRLWDLTTGTTTRRFV--GHTKDVLSVAFS-SDNRQIVSGSRDKTIKLWNTLGVCKY  163 (340)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEE--CCSSCEEEEEEC-TTSSCEEEEETTSCEEEECTTSCEEE
T ss_pred             CEEEEEECC-CCCEEEEEcccccceEEeecccceeeeec--CCCCceeEEEEe-ecCccceeecCCCeEEEEEeCCCceE
Confidence            599999999 99999999999999999999888877766  667788888887 78889999999999999998753221


Q ss_pred             cccccc-----------------------------------CcceeE-eccCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 004969          535 IRGMHY-----------------------------------GAGTVT-FDEFDQLTSVHVNSMDELFLASGYSKNIALYD  578 (721)
Q Consensus       535 ~~~~~~-----------------------------------~~~~~~-~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWD  578 (721)
                      .....+                                   ...... ..|..+|++++|+|++..+++++.||.|++||
T Consensus       164 ~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd  243 (340)
T 4aow_A          164 TVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWD  243 (340)
T ss_dssp             EECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred             EEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            100000                                   000111 12567899999999999999999999999999


Q ss_pred             CCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEE-------EecCCCCeE-EEEEecCCC
Q 004969          579 INSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCY-------TASSSKGNV-MVCFSPDDH  650 (721)
Q Consensus       579 l~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~-------~~~~~~~~v-sl~fSpdg~  650 (721)
                      +++++.+..+.  +...|.++.|+|++  .+++++.|+.|++||++++......       ...+|...+ +++|+|+|+
T Consensus       244 ~~~~~~~~~~~--~~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~  319 (340)
T 4aow_A          244 LNEGKHLYTLD--GGDIINALCFSPNR--YWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQ  319 (340)
T ss_dssp             TTTTEEEEEEE--CSSCEEEEEECSSS--SEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSS
T ss_pred             eccCceeeeec--CCceEEeeecCCCC--ceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCC
Confidence            99999999887  56789999999987  4566778999999999986432221       223455666 899999999


Q ss_pred             EEEEEeCCCcEEEEEcC
Q 004969          651 YLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       651 ~Lasgs~Dg~I~VWDl~  667 (721)
                      +|++|+.||.|+|||++
T Consensus       320 ~l~sgs~Dg~v~iW~~~  336 (340)
T 4aow_A          320 TLFAGYTDNLVRVWQVT  336 (340)
T ss_dssp             EEEEEETTSCEEEEEEE
T ss_pred             EEEEEeCCCEEEEEeCC
Confidence            99999999999999987

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.91  E-value=1.1e-22  Score=219.93  Aligned_cols=221  Identities=12%  Similarity=0.113  Sum_probs=162.5

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEE-EEEeCCCeEEEEEcCCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKL-IAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~L-aSgs~DGtVrIWDi~~~~~  533 (721)
                      .|++++|+| +++++++|+.+| ++||++.+++.......    ..+..++|. ++++.+ ++++.|++|++||+.+++.
T Consensus        21 ~V~~v~fs~-dg~~la~g~~~~-~~iw~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~d~~v~iWd~~~~~~   93 (355)
T 3vu4_A           21 PVTDYEFNQ-DQSCLILSTLKS-FEIYNVHPVAHIMSQEM----RHLSKVRML-HRTNYVAFVTGVKEVVHIWDDVKKQD   93 (355)
T ss_dssp             CCCEEEECT-TSSEEEEECSSE-EEEEEETTEEEEEEEEC----SCCCEEEEC-TTSSEEEEECSSTTEEEEEETTTTEE
T ss_pred             ceEEEEECC-CCCEEEEEcCCE-EEEEecCCcceeeeeec----CCeEEEEEc-CCCCEEEEEECCccEEEEEECCCCcE
Confidence            589999999 999999998776 78999998776655432    247778887 455555 6788899999999988654


Q ss_pred             cccccccCcceeEeccCCCeEEEEEecCC-----------------------------------CEEEEE--eCCCcEEE
Q 004969          534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMD-----------------------------------ELFLAS--GYSKNIAL  576 (721)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~-----------------------------------~~lls~--g~Dg~Irl  576 (721)
                      ..          .+.+...|.+++++++.                                   ..++++  +.||.|++
T Consensus        94 ~~----------~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~i  163 (355)
T 3vu4_A           94 VS----------RIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHI  163 (355)
T ss_dssp             EE----------EEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEE
T ss_pred             EE----------EEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEE
Confidence            21          12222333333333211                                   345553  56899999


Q ss_pred             EECCCCc---------------E-EEEEccccCCCeEEEEEcCCCCcEEEEEECCCc-EEEEECCCCCceeEEEec-C-C
Q 004969          577 YDINSGR---------------R-LQVFADMHKEHINVVKFSNHSPSIFATSSFDQD-VKLWDLRQKPIQPCYTAS-S-S  637 (721)
Q Consensus       577 WDl~s~~---------------~-v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~Dgt-IrIWDlrs~~~~~~~~~~-~-~  637 (721)
                      ||+++++               + +..+.+ |...|++++|+|+| .++++|+.|++ |++||+++++..  ..+. + |
T Consensus       164 wd~~~~~~~~~~~~~~~~~~~~p~~~~~~~-h~~~v~~~~~s~~g-~~l~s~s~d~~~v~iwd~~~~~~~--~~~~~g~h  239 (355)
T 3vu4_A          164 TKLQSSGSATTQDQGVQQKAILGKGVLIKA-HTNPIKMVRLNRKS-DMVATCSQDGTIIRVFKTEDGVLV--REFRRGLD  239 (355)
T ss_dssp             EECCC------------------CCEEECC-CSSCEEEEEECTTS-SEEEEEETTCSEEEEEETTTCCEE--EEEECTTC
T ss_pred             EECCCCCccccccccccccccCcccEEEEc-cCCceEEEEECCCC-CEEEEEeCCCCEEEEEECCCCcEE--EEEEcCCC
Confidence            9999865               2 677776 99999999999999 89999999998 999999998654  4444 3 6


Q ss_pred             CCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCc------ccc---------------------cccCeEEEEECCCCCc
Q 004969          638 KGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDP------FRD---------------------FNMSILAAYTRPSSKS  689 (721)
Q Consensus       638 ~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~------l~~---------------------~~~~V~~v~fsP~~~~  689 (721)
                      ...+ +++|+|+|++|++++.|+.|++||++...      +..                     .......++|+|++  
T Consensus       240 ~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~--  317 (355)
T 3vu4_A          240 RADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISES--  317 (355)
T ss_dssp             CSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSS--
T ss_pred             CCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCC--
Confidence            6666 99999999999999999999999997321      111                     01122568999999  


Q ss_pred             ccccccEEEEecCC
Q 004969          690 EIVKVNLLASTDHC  703 (721)
Q Consensus       690 ~~v~v~lLASgs~~  703 (721)
                           ..|++++..
T Consensus       318 -----~~l~~~~~d  326 (355)
T 3vu4_A          318 -----SLVVVWPHT  326 (355)
T ss_dssp             -----EEEEEETTT
T ss_pred             -----CEEEEEeCC
Confidence                 788888765

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.91  E-value=9.4e-22  Score=224.35  Aligned_cols=228  Identities=11%  Similarity=0.086  Sum_probs=180.1

Q ss_pred             CeEEEEEeCCCCC-EEEEEECCCeEEEEECCCCeEEEEeecCCCCC---CeEEEEEeeCC-CCEEEEEeCCCeEEEEEcC
Q 004969          455 RPRQFEYHPSISC-LMVFGTLDGEIVVVNHENENIVSYIPSFGAMN---SVLGLCWLKKY-PSKLIAGSDNGSLKLYDIR  529 (721)
Q Consensus       455 ~V~~lafsP~dg~-~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~---~V~sl~fsp~d-~~~LaSgs~DGtVrIWDi~  529 (721)
                      .|++++|+| ++. ++++|+.||.|++||+.+++.+..+.  +|..   .|++++|+ ++ +++|++++.||.|++||+.
T Consensus       162 ~v~~~~~~~-~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~--~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~vwd~~  237 (615)
T 1pgu_A          162 RINACHLKQ-SRPMRSMTVGDDGSVVFYQGPPFKFSASDR--THHKQGSFVRDVEFS-PDSGEFVITVGSDRKISCFDGK  237 (615)
T ss_dssp             CEEEEEECS-SSSCEEEEEETTTEEEEEETTTBEEEEEEC--SSSCTTCCEEEEEEC-STTCCEEEEEETTCCEEEEETT
T ss_pred             cEEEEEECC-CCCcEEEEEeCCCcEEEEeCCCcceeeeec--ccCCCCceEEEEEEC-CCCCCEEEEEeCCCeEEEEECC
Confidence            599999999 665 89999999999999999999988887  7888   99999999 56 8999999999999999998


Q ss_pred             CCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEc--------------------
Q 004969          530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFA--------------------  589 (721)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~--------------------  589 (721)
                      +++........     ...|...|.+++|+ ++..+++++.|+.|++||+++++.+..+.                    
T Consensus       238 ~~~~~~~~~~~-----~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (615)
T 1pgu_A          238 SGEFLKYIEDD-----QEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR  311 (615)
T ss_dssp             TCCEEEECCBT-----TBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTE
T ss_pred             CCCEeEEeccc-----ccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCe
Confidence            86542111000     00345567777777 67777777777777777766443221110                    


Q ss_pred             --------------------------------------------------------------------------------
Q 004969          590 --------------------------------------------------------------------------------  589 (721)
Q Consensus       590 --------------------------------------------------------------------------------  589 (721)
                                                                                                      
T Consensus       312 l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~  391 (615)
T 1pgu_A          312 IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISW  391 (615)
T ss_dssp             EEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEET
T ss_pred             EEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeC
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 004969          590 --------------------------------------------------------------------------------  589 (721)
Q Consensus       590 --------------------------------------------------------------------------------  589 (721)
                                                                                                      
T Consensus       392 d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~  471 (615)
T 1pgu_A          392 DDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQV  471 (615)
T ss_dssp             TTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEE
T ss_pred             CCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEE
Confidence                                                                                            


Q ss_pred             -------------cccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecC-CCCeE-EEEEec-------
Q 004969          590 -------------DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASS-SKGNV-MVCFSP-------  647 (721)
Q Consensus       590 -------------~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~-~~~~v-sl~fSp-------  647 (721)
                                   ..|...|.+++|+|++ .++++|+.||.|++||+.+++.  +..+.+ |...+ +++|+|       
T Consensus       472 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~h~~~v~~~~~sp~~~~~~~  548 (615)
T 1pgu_A          472 FKLSDLEVSFDLKTPLRAKPSYISISPSE-TYIAAGDVMGKILLYDLQSREV--KTSRWAFRTSKINAISWKPAEKGANE  548 (615)
T ss_dssp             EETTEEEEEEECSSCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE--EECCSCCCSSCEEEEEECCCC-----
T ss_pred             EECCCccccccccCCccCceEEEEECCCC-CEEEEcCCCCeEEEeeCCCCcc--eeEeecCCCCceeEEEEcCccccccc
Confidence                         1256678899999999 7999999999999999998744  555565 66666 999999       


Q ss_pred             ---CCCEEEEEeCCCcEEEEEcCC--Cc---ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          648 ---DDHYLLGKGSGTSMFVQSLRG--DP---FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       648 ---dg~~Lasgs~Dg~I~VWDl~g--~~---l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                         ++++|++++.||.|++||+..  ..   +..|...|.+++|+|++       . |++++..
T Consensus       549 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~-------~-l~s~~~d  604 (615)
T 1pgu_A          549 EEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-------T-LVSSGAD  604 (615)
T ss_dssp             -CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-------E-EEEEETT
T ss_pred             cccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCC-------C-eEEecCC
Confidence               999999999999999999984  23   45677899999999999       8 8888876

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.90  E-value=2.6e-22  Score=221.93  Aligned_cols=216  Identities=13%  Similarity=0.223  Sum_probs=180.7

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|++++|   +++++++|+.||+|++||+.+++.+..+.  +|...|.+++|+   ++.+++|+.||+|++||+.++...
T Consensus       175 ~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~  246 (435)
T 1p22_A          175 SVLCLQY---DERVIITGSSDSTVRVWDVNTGEMLNTLI--HHCEAVLHLRFN---NGMMVTCSKDRSIAVWDMASPTDI  246 (435)
T ss_dssp             CEEEEEC---CSSEEEEEETTSCEEEEESSSCCEEEEEC--CCCSCEEEEECC---TTEEEEEETTSCEEEEECSSSSCC
T ss_pred             cEEEEEE---CCCEEEEEcCCCeEEEEECCCCcEEEEEc--CCCCcEEEEEEc---CCEEEEeeCCCcEEEEeCCCCCCc
Confidence            5889988   45899999999999999999999998887  889999999985   469999999999999999886542


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF  614 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~  614 (721)
                      ..      ......|...|.++++  ++..+++++.||.|++||+++++.+..+.+ |...|.+++|+  + .++++|+.
T Consensus       247 ~~------~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~--~-~~l~~g~~  314 (435)
T 1p22_A          247 TL------RRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNG-HKRGIACLQYR--D-RLVVSGSS  314 (435)
T ss_dssp             EE------EEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEEE--T-TEEEEEET
T ss_pred             ee------eeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcC-CCCcEEEEEeC--C-CEEEEEeC
Confidence            10      0122345677899998  788999999999999999999999999997 99999999995  4 68999999


Q ss_pred             CCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC-C------------cccccccCeEE
Q 004969          615 DQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG-D------------PFRDFNMSILA  680 (721)
Q Consensus       615 DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g-~------------~l~~~~~~V~~  680 (721)
                      ||+|++||+++++.  +..+.+|...+ +++|  ++.+|++|+.||.|++||++. .            .+..|...|.+
T Consensus       315 dg~i~iwd~~~~~~--~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~  390 (435)
T 1p22_A          315 DNTIRLWDIECGAC--LRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFR  390 (435)
T ss_dssp             TSCEEEEETTTCCE--EEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCC
T ss_pred             CCeEEEEECCCCCE--EEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEE
Confidence            99999999999854  56667787777 7777  799999999999999999852 1            24456778888


Q ss_pred             EEECCCCCcccccccEEEEecCC
Q 004969          681 AYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       681 v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      ++|  ++       ..|++|+..
T Consensus       391 l~~--~~-------~~l~s~s~D  404 (435)
T 1p22_A          391 LQF--DE-------FQIVSSSHD  404 (435)
T ss_dssp             EEE--CS-------SCEEECCSS
T ss_pred             EEe--CC-------CEEEEEeCC
Confidence            888  45       567888765

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.90  E-value=4.9e-23  Score=233.69  Aligned_cols=222  Identities=14%  Similarity=0.204  Sum_probs=173.7

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCC-----CeEEEEEeeCCCCEEEEEeCCCeEEEEEcC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMN-----SVLGLCWLKKYPSKLIAGSDNGSLKLYDIR  529 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~-----~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~  529 (721)
                      .|++++|+| +|.+||+++.||+|+|||.++  .+..+.   |..     .|.+++|+ +++++|++|+.||+|++||+.
T Consensus        87 ~V~~vawSP-dG~~LAs~s~dg~V~iwd~~~--~l~~l~---~~~~~~~~sv~svafS-PDG~~LAsgs~DGtVkIWd~~  159 (588)
T 2j04_A           87 YPRVCKPSP-IDDWMAVLSNNGNVSVFKDNK--MLTNLD---SKGNLSSRTYHCFEWN-PIESSIVVGNEDGELQFFSIR  159 (588)
T ss_dssp             CEEEEEECS-SSSCEEEEETTSCEEEEETTE--EEEECC---CSSCSTTTCEEEEEEC-SSSSCEEEEETTSEEEEEECC
T ss_pred             cEEEEEECC-CCCEEEEEeCCCcEEEEeCCc--eeeecc---CCCccccccEEEEEEc-CCCCEEEEEcCCCEEEEEECC
Confidence            699999999 999999999999999999654  555443   333     59999998 799999999999999999999


Q ss_pred             CCCC------cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcE---EEEEccccCCCeEEEE
Q 004969          530 HMPP------SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRR---LQVFADMHKEHINVVK  600 (721)
Q Consensus       530 ~~~~------~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~---v~~l~~~h~~~V~sI~  600 (721)
                      ++..      .+..+..+    .-.|...|.+++|+|++  +++++.|++|++||+.+++.   .+++..+|...|.+++
T Consensus       160 ~~~l~~~~~i~l~ti~~~----~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sva  233 (588)
T 2j04_A          160 KNSENTPEFYFESSIRLS----DAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLK  233 (588)
T ss_dssp             CCTTTCCCCEEEEEEECS----CTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEE
T ss_pred             CCccccccceeeeeeecc----cccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEE
Confidence            8642      01111100    01245689999999988  88999999999999998773   4567534889999999


Q ss_pred             EcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEE--ecCCCEEEEEeCCCcEEEEEcC----------
Q 004969          601 FSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCF--SPDDHYLLGKGSGTSMFVQSLR----------  667 (721)
Q Consensus       601 fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~f--Spdg~~Lasgs~Dg~I~VWDl~----------  667 (721)
                      |+  | ..+|+++ +++|++||+.++... .... +|...+ .++|  +|++..+++++.||. ++|...          
T Consensus       234 Fs--g-~~LASa~-~~tIkLWd~~~~~~~-~~~~-gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l  306 (588)
T 2j04_A          234 IV--D-YKVVLTC-PGYVHKIDLKNYSIS-SLKT-GSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNII  306 (588)
T ss_dssp             EE--T-TEEEEEC-SSEEEEEETTTTEEE-EEEC-SCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSS
T ss_pred             EE--C-CEEEEEe-CCeEEEEECCCCeEE-EEEc-CCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceE
Confidence            99  5 6888887 699999999987432 3333 577766 8999  999999999999999 888862          


Q ss_pred             --------------CCccccc--ccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          668 --------------GDPFRDF--NMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       668 --------------g~~l~~~--~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                                    +.++..+  ...|.+++|+|+|       .++|+++..
T Consensus       307 ~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG-------~~lA~~~~i  351 (588)
T 2j04_A          307 APYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDG-------YSIAIVYDM  351 (588)
T ss_dssp             HHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTS-------SEEEEEEEE
T ss_pred             EEEcCCEEEEEECCCCceeeeccceEEEEEEECCCC-------CEEEEEEec
Confidence                          1111111  2358999999999       999999887

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.90  E-value=5.4e-23  Score=233.33  Aligned_cols=219  Identities=8%  Similarity=0.021  Sum_probs=173.1

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEE-----------------------------EEeecCCCCCCeEEEE
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIV-----------------------------SYIPSFGAMNSVLGLC  505 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i-----------------------------~~l~~~~H~~~V~sl~  505 (721)
                      .|.+++|+| ||+++|+|+.|++|+  |...++.+                             ..+. ..|...|.+++
T Consensus        17 ~v~sv~~Sp-DG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~-~~~~~~V~~va   92 (588)
T 2j04_A           17 WKNNLTWAR-DGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLN-SQPVCYPRVCK   92 (588)
T ss_dssp             SSCCEEECT-TSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSST-TSCSCCEEEEE
T ss_pred             cEEEEEECC-CCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEee-cCCCCcEEEEE
Confidence            378899999 999999999999996  54433311                             1111 15578899999


Q ss_pred             EeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccC-----CCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 004969          506 WLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEF-----DQLTSVHVNSMDELFLASGYSKNIALYDIN  580 (721)
Q Consensus       506 fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~-----~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~  580 (721)
                      |+ +++..|++++.||+|++||..+   .         ...+.|.     ..|.+++|+|+|+.+++|+.||+|++||+.
T Consensus        93 wS-PdG~~LAs~s~dg~V~iwd~~~---~---------l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~  159 (588)
T 2j04_A           93 PS-PIDDWMAVLSNNGNVSVFKDNK---M---------LTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR  159 (588)
T ss_dssp             EC-SSSSCEEEEETTSCEEEEETTE---E---------EEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred             EC-CCCCEEEEEeCCCcEEEEeCCc---e---------eeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence            99 7999999999999999999544   1         1112222     248999999999999999999999999999


Q ss_pred             CCc-------EEEEEc---cccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCce-eEEEe-cCCCCeE-EEEEec
Q 004969          581 SGR-------RLQVFA---DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQ-PCYTA-SSSKGNV-MVCFSP  647 (721)
Q Consensus       581 s~~-------~v~~l~---~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~-~~~~~-~~~~~~v-sl~fSp  647 (721)
                      ++.       .+.++.   .+|..+|.+++|+|+|   +++++.|++|++||+.++... ...++ .+|...+ +++|+ 
T Consensus       160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs-  235 (588)
T 2j04_A          160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV-  235 (588)
T ss_dssp             CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE-
T ss_pred             CCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE-
Confidence            885       356763   2388999999999987   888999999999999887643 22344 3565555 89999 


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCcc---c-ccccCeEEEEE--CCCCCcccccccEEEEecCC
Q 004969          648 DDHYLLGKGSGTSMFVQSLRGDPF---R-DFNMSILAAYT--RPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       648 dg~~Lasgs~Dg~I~VWDl~g~~l---~-~~~~~V~~v~f--sP~~~~~~v~v~lLASgs~~  703 (721)
                       |++|++++ ++.|++||+.+...   . +|...+..++|  +|++       ..|++++..
T Consensus       236 -g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~-------~~La~a~ed  288 (588)
T 2j04_A          236 -DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKES-------TILLMSNKT  288 (588)
T ss_dssp             -TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSC-------EEEEECSSC
T ss_pred             -CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCC-------CEEEEEcCC
Confidence             68999887 69999999986543   2 67789999999  9999       889998866

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.90  E-value=5.2e-22  Score=247.20  Aligned_cols=228  Identities=16%  Similarity=0.161  Sum_probs=190.9

Q ss_pred             cCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeC-CCCEEEEEeCCCeEEEEEcCCCC
Q 004969          454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKK-YPSKLIAGSDNGSLKLYDIRHMP  532 (721)
Q Consensus       454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~-d~~~LaSgs~DGtVrIWDi~~~~  532 (721)
                      ..|++++|+| +++++++|+.||+|+|||+.+++.+..+.  +|...|.+++|+|. +..++++|+.||+|++||+.++.
T Consensus       658 ~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~  734 (1249)
T 3sfz_A          658 DEVLCCAFSS-DDSYIATCSADKKVKIWDSATGKLVHTYD--EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE  734 (1249)
T ss_dssp             SCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS
T ss_pred             CCEEEEEEec-CCCEEEEEeCCCeEEEEECCCCceEEEEc--CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc
Confidence            3699999999 99999999999999999999999999888  89999999999853 45689999999999999998865


Q ss_pred             CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEE------------------------
Q 004969          533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVF------------------------  588 (721)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l------------------------  588 (721)
                      ..         .....|...|.+++|+|++..+++++.||.|++||+++++....+                        
T Consensus       735 ~~---------~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  805 (1249)
T 3sfz_A          735 CR---------NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCS  805 (1249)
T ss_dssp             EE---------EEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCC
T ss_pred             hh---------heecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEE
Confidence            31         112246678999999999999999999999999999876544332                        


Q ss_pred             ------------------------------ccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCC
Q 004969          589 ------------------------------ADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSK  638 (721)
Q Consensus       589 ------------------------------~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~  638 (721)
                                                    ..+|...|.+++|+|++ .++++++.||.|++||+.++.  ....+.+|.
T Consensus       806 ~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~v~vwd~~~~~--~~~~~~~h~  882 (1249)
T 3sfz_A          806 WSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD-HLAVIALSQYCVELWNIDSRL--KVADCRGHL  882 (1249)
T ss_dssp             BCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST-TEEEEECSSSCEEEEETTTTE--EEEEECCCS
T ss_pred             ECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCc--eeeecCCCc
Confidence                                          21478889999999999 799999999999999999874  466677888


Q ss_pred             CeE-EEEEecCCCEEEEEeCCCcEEEEEcCCC-----------------------------------------ccccccc
Q 004969          639 GNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGD-----------------------------------------PFRDFNM  676 (721)
Q Consensus       639 ~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~-----------------------------------------~l~~~~~  676 (721)
                      ..+ +++|+|+|.++++++.||.|++|++...                                         .......
T Consensus       883 ~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  962 (1249)
T 3sfz_A          883 SWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEA  962 (1249)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCS
T ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccC
Confidence            877 8999999999999999999999996420                                         0011134


Q ss_pred             CeEEEEECCCCCcccccccEEEEecCC
Q 004969          677 SILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       677 ~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      .+.+++|+|++       ..+++|+..
T Consensus       963 ~i~~~~~sp~g-------~~l~~g~~~  982 (1249)
T 3sfz_A          963 QVSCCCLSPHL-------EYVAFGDED  982 (1249)
T ss_dssp             CEEEEEECTTS-------SEEEEEETT
T ss_pred             cEEEEEEcCCC-------CEEEEEcCC
Confidence            68899999999       788888765

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.90  E-value=7.3e-22  Score=205.15  Aligned_cols=191  Identities=14%  Similarity=0.196  Sum_probs=161.8

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|.+++|++   +++++|+.||.|++||  .+.....+.  .|...|.+++|+|.+++.+++++.||.|++||.....  
T Consensus       106 ~i~~~~~~~---~~l~~~~~d~~i~~~d--~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--  176 (313)
T 3odt_A          106 NVCSLSFQD---GVVISGSWDKTAKVWK--EGSLVYNLQ--AHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVI--  176 (313)
T ss_dssp             CEEEEEEET---TEEEEEETTSEEEEEE--TTEEEEEEE--CCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEE--
T ss_pred             CEEEEEecC---CEEEEEeCCCCEEEEc--CCcEEEecc--cCCCceeEEEEccCCCCEEEEEECCCCEEEEecCceE--
Confidence            589999954   7999999999999999  677777776  7899999999997799999999999999999943311  


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF  614 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~  614 (721)
                              ......+...|.+++|+|++. +++++.||.|++||+++++.+..+.+ |...|.+++|+|++  .+++++.
T Consensus       177 --------~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~--~l~~~~~  244 (313)
T 3odt_A          177 --------KTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEG-HESFVYCIKLLPNG--DIVSCGE  244 (313)
T ss_dssp             --------EEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECTTS--CEEEEET
T ss_pred             --------EEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhc-CCceEEEEEEecCC--CEEEEec
Confidence                    111222567799999999887 99999999999999999999999987 99999999999998  4889999


Q ss_pred             CCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004969          615 DQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGD  669 (721)
Q Consensus       615 DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~  669 (721)
                      ||.|++||+++++.  ...+..+...+ +++|+|+++ +++++.||.|++||++..
T Consensus       245 dg~v~iwd~~~~~~--~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~  297 (313)
T 3odt_A          245 DRTVRIWSKENGSL--KQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKS  297 (313)
T ss_dssp             TSEEEEECTTTCCE--EEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGG
T ss_pred             CCEEEEEECCCCce--eEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCC
Confidence            99999999999865  44445566555 899999999 556889999999999843

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.1e-21  Score=207.93  Aligned_cols=204  Identities=13%  Similarity=0.114  Sum_probs=164.1

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC-----CeEEEEEcC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN-----GSLKLYDIR  529 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D-----GtVrIWDi~  529 (721)
                      .|++++|+| +++++++|+.||.|++||+.+++.+..+.   |...|.+++|+ +++.++++++.+     |.|++||+.
T Consensus        76 ~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~~-~~~~~l~~~~~~~~~~~g~i~~~d~~  150 (369)
T 3zwl_B           76 TIWSIDVDC-FTKYCVTGSADYSIKLWDVSNGQCVATWK---SPVPVKRVEFS-PCGNYFLAILDNVMKNPGSINIYEIE  150 (369)
T ss_dssp             CEEEEEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEE---CSSCEEEEEEC-TTSSEEEEEECCBTTBCCEEEEEEEE
T ss_pred             cEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEee---cCCCeEEEEEc-cCCCEEEEecCCccCCCCEEEEEEec
Confidence            599999999 99999999999999999999998887775   55677777776 566677777766     777777765


Q ss_pred             CCCCc----------------------cccc-----------------------cc-CcceeEe-ccCCCeEEEEEecCC
Q 004969          530 HMPPS----------------------IRGM-----------------------HY-GAGTVTF-DEFDQLTSVHVNSMD  562 (721)
Q Consensus       530 ~~~~~----------------------~~~~-----------------------~~-~~~~~~~-~~~~~V~sv~~sp~~  562 (721)
                      .....                      +...                       .. ......+ .+...|.+++|+|++
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  230 (369)
T 3zwl_B          151 RDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDL  230 (369)
T ss_dssp             ECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTS
T ss_pred             CCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCC
Confidence            44210                      0000                       00 0111122 255779999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCC--------------cEEEEECCCCCc
Q 004969          563 ELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQ--------------DVKLWDLRQKPI  628 (721)
Q Consensus       563 ~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~Dg--------------tIrIWDlrs~~~  628 (721)
                      ..+++++.|+.|++||+++++.+..+.  +...+.+++|+|++ ..+++++.++              .+++||..+++.
T Consensus       231 ~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  307 (369)
T 3zwl_B          231 TYFITSSRDTNSFLVDVSTLQVLKKYE--TDCPLNTAVITPLK-EFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEE  307 (369)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEEE--CSSCEEEEEECSSS-SEEEEEECCC-------------CEEEEEETTTCCE
T ss_pred             CEEEEecCCceEEEEECCCCceeeeec--CCCCceeEEecCCC-ceEEEeecCCCceEEEEecCCCcceeEEEecCCCcc
Confidence            999999999999999999999999987  78899999999999 7899998888              899999999854


Q ss_pred             eeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004969          629 QPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG  668 (721)
Q Consensus       629 ~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g  668 (721)
                        ...+.+|...+ +++|+|+|++|++++.||.|++|+++.
T Consensus       308 --~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  346 (369)
T 3zwl_B          308 --IGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEK  346 (369)
T ss_dssp             --EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred             --hhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence              55566777777 899999999999999999999999983

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.90  E-value=2.3e-21  Score=214.48  Aligned_cols=214  Identities=14%  Similarity=0.245  Sum_probs=177.2

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|.+++|++   +.+++|+.||+|++||+.+++.+..+.  +|...|.+++|   ++..+++|+.||.|++||+++++. 
T Consensus       201 ~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~--~~~~~v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~-  271 (445)
T 2ovr_B          201 TVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLM--GHVAAVRCVQY---DGRRVVSGAYDFMVKVWDPETETC-  271 (445)
T ss_dssp             CEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEEE--CCSSCEEEEEE---CSSCEEEEETTSCEEEEEGGGTEE-
T ss_pred             cEEEEEecC---CEEEEEeCCCEEEEEECCCCcEEEEEc--CCcccEEEEEE---CCCEEEEEcCCCEEEEEECCCCcE-
Confidence            588888876   779999999999999999888888877  78889999987   567899999999999999887543 


Q ss_pred             ccccccCcceeEe-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969          535 IRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS  613 (721)
Q Consensus       535 ~~~~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs  613 (721)
                               ...+ .|...|.++++  ++..+++++.||.|++||+++++.+..+.+ |...+.++.++  + .++++|+
T Consensus       272 ---------~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~--~-~~l~~~~  336 (445)
T 2ovr_B          272 ---------LHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTG-HQSLTSGMELK--D-NILVSGN  336 (445)
T ss_dssp             ---------EEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECC-CCSCEEEEEEE--T-TEEEEEE
T ss_pred             ---------eEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcC-CcccEEEEEEe--C-CEEEEEe
Confidence                     1222 35567899998  789999999999999999999999999987 99999998885  4 5899999


Q ss_pred             CCCcEEEEECCCCCceeEEEecC---CCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC-CCcc--------cccccCeEE
Q 004969          614 FDQDVKLWDLRQKPIQPCYTASS---SKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR-GDPF--------RDFNMSILA  680 (721)
Q Consensus       614 ~DgtIrIWDlrs~~~~~~~~~~~---~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~l--------~~~~~~V~~  680 (721)
                      .||.|++||+++++.  ...+.+   |...+ +++|+  ++++++|+.||.|++||++ +..+        ..+...|.+
T Consensus       337 ~dg~i~vwd~~~~~~--~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~  412 (445)
T 2ovr_B          337 ADSTVKIWDIKTGQC--LQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWR  412 (445)
T ss_dssp             TTSCEEEEETTTCCE--EEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEE
T ss_pred             CCCeEEEEECCCCcE--EEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEE
Confidence            999999999998865  344443   55555 78885  6899999999999999998 4332        244668999


Q ss_pred             EEECCCCCcccccccEEEEecCC
Q 004969          681 AYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       681 v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      ++|+|++       .++|+|+..
T Consensus       413 ~~~s~~~-------~~la~~~~d  428 (445)
T 2ovr_B          413 IRASNTK-------LVCAVGSRN  428 (445)
T ss_dssp             EEECSSE-------EEEEEECSS
T ss_pred             EEecCCE-------EEEEEcccC
Confidence            9999999       999999876

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.90  E-value=9.7e-22  Score=216.53  Aligned_cols=225  Identities=13%  Similarity=0.201  Sum_probs=180.3

Q ss_pred             cCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969          454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~  533 (721)
                      +++..|+|++ + ++||+|. |++|+|||..+|+....+...+|...|++|+|+ +++++|++|+.||+|++||+.+++.
T Consensus       106 ~y~~~l~wS~-~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fs-pdg~~lasgs~Dg~v~iWd~~~~~~  181 (420)
T 4gga_A          106 YYLNLVDWSS-G-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWI-KEGNYLAVGTSSAEVQLWDVQQQKR  181 (420)
T ss_dssp             TTCBCEEECT-T-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEE
T ss_pred             ccceeEEECC-C-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEEC-CCCCEEEEEECCCeEEEEEcCCCcE
Confidence            5788899998 4 5777776 999999999999999988877899999999998 7899999999999999999998654


Q ss_pred             cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC-cEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969          534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSG-RRLQVFADMHKEHINVVKFSNHSPSIFATS  612 (721)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~-~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg  612 (721)
                      . ..        ...|...+.++++  ++..+++++.|+.+++||.+.. ..+..+.+ |...+..+.|+|++ ..++++
T Consensus       182 ~-~~--------~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~-h~~~~~~~~~~~~g-~~l~s~  248 (420)
T 4gga_A          182 L-RN--------MTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSG-HSQEVCGLRWAPDG-RHLASG  248 (420)
T ss_dssp             E-EE--------ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEEC-CSSCEEEEEECTTS-SEEEEE
T ss_pred             E-EE--------EeCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEecc-cccceeeeeecCCC-Ceeeee
Confidence            1 11        1234566788877  5678999999999999999874 45566776 99999999999999 899999


Q ss_pred             ECCCcEEEEECCCCCce--eEEEecCCCCeE-EEEEecCCC-EEEEE--eCCCcEEEEEcCC-Ccccc--cccCeEEEEE
Q 004969          613 SFDQDVKLWDLRQKPIQ--PCYTASSSKGNV-MVCFSPDDH-YLLGK--GSGTSMFVQSLRG-DPFRD--FNMSILAAYT  683 (721)
Q Consensus       613 s~DgtIrIWDlrs~~~~--~~~~~~~~~~~v-sl~fSpdg~-~Lasg--s~Dg~I~VWDl~g-~~l~~--~~~~V~~v~f  683 (721)
                      +.|+.|++||..++...  .......+...+ +++|+|++. .++++  +.|+.|++||++. .....  ....+..+.|
T Consensus       249 ~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~  328 (420)
T 4gga_A          249 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILW  328 (420)
T ss_dssp             ETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEE
T ss_pred             eccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeee
Confidence            99999999999876432  344556677777 899999664 55543  4799999999983 33222  2467899999


Q ss_pred             CCCCCcccccccEEEEecC
Q 004969          684 RPSSKSEIVKVNLLASTDH  702 (721)
Q Consensus       684 sP~~~~~~v~v~lLASgs~  702 (721)
                      +|++       ..++++++
T Consensus       329 ~~~~-------~~lv~~sg  340 (420)
T 4gga_A          329 SPHY-------KELISGHG  340 (420)
T ss_dssp             ETTT-------TEEEEEEC
T ss_pred             cCCC-------CeEEEEEe
Confidence            9998       66666654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.90  E-value=1.3e-21  Score=216.27  Aligned_cols=213  Identities=16%  Similarity=0.290  Sum_probs=176.4

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|.+++|   +++++++|+.||+|++||+.+++....+.  +|.+.|++++|   +++++++|+.||+|++||+.+++..
T Consensus       135 ~v~~~~~---d~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~~  206 (435)
T 1p22_A          135 GVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILT--GHTGSVLCLQY---DERVIITGSSDSTVRVWDVNTGEML  206 (435)
T ss_dssp             CEEEEEC---CSSEEEEEESSSCEEEEESSSCCEEEEEC--CCSSCEEEEEC---CSSEEEEEETTSCEEEEESSSCCEE
T ss_pred             cEEEEEE---CCCEEEEEeCCCeEEEEeCCCCeEEEEEc--CCCCcEEEEEE---CCCEEEEEcCCCeEEEEECCCCcEE
Confidence            4777776   56999999999999999999999998887  89999999997   5789999999999999999986541


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEE---EEEccccCCCeEEEEEcCCCCcEEEE
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRL---QVFADMHKEHINVVKFSNHSPSIFAT  611 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v---~~l~~~h~~~V~sI~fsPdg~~lLaS  611 (721)
                       .        ....|...|.+++|+  ++.+++++.||.|++||+++++..   ..+.+ |...|.+++|  ++ ..+++
T Consensus       207 -~--------~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~~~~v~~~~~--~~-~~l~s  271 (435)
T 1p22_A          207 -N--------TLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVG-HRAAVNVVDF--DD-KYIVS  271 (435)
T ss_dssp             -E--------EECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECC-CSSCEEEEEE--ET-TEEEE
T ss_pred             -E--------EEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecC-CCCcEEEEEe--CC-CEEEE
Confidence             1        112355678999995  569999999999999999987755   55665 9999999999  45 69999


Q ss_pred             EECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC-CCc---ccccccCeEEEEECCC
Q 004969          612 SSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR-GDP---FRDFNMSILAAYTRPS  686 (721)
Q Consensus       612 gs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~---l~~~~~~V~~v~fsP~  686 (721)
                      |+.||.|++||+++++.  +..+.+|...+ ++.|  ++.++++|+.||.|++||++ +..   +..|...|.+++|  +
T Consensus       272 ~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~  345 (435)
T 1p22_A          272 ASGDRTIKVWNTSTCEF--VRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--D  345 (435)
T ss_dssp             EETTSEEEEEETTTCCE--EEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--C
T ss_pred             EeCCCeEEEEECCcCcE--EEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--c
Confidence            99999999999999854  55566777766 7777  57899999999999999998 433   4556778999988  4


Q ss_pred             CCcccccccEEEEecCC
Q 004969          687 SKSEIVKVNLLASTDHC  703 (721)
Q Consensus       687 ~~~~~v~v~lLASgs~~  703 (721)
                      +       ..|++|+..
T Consensus       346 ~-------~~l~sg~~d  355 (435)
T 1p22_A          346 N-------KRIVSGAYD  355 (435)
T ss_dssp             S-------SEEEEEETT
T ss_pred             C-------CEEEEEeCC
Confidence            5       678888765

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.90  E-value=3.3e-22  Score=214.47  Aligned_cols=199  Identities=12%  Similarity=0.061  Sum_probs=144.6

Q ss_pred             CeEEEEEeCCC----CCEEEEEEC--------------------CCeEEEEEC-CCCeEEEEeecCCCCCCeEEEEEee-
Q 004969          455 RPRQFEYHPSI----SCLMVFGTL--------------------DGEIVVVNH-ENENIVSYIPSFGAMNSVLGLCWLK-  508 (721)
Q Consensus       455 ~V~~lafsP~d----g~~LasGs~--------------------DG~I~IWdl-~tg~~i~~l~~~~H~~~V~sl~fsp-  508 (721)
                      .|++++|+| +    +..+++++.                    |++|++|++ ++|+.+..+.  +|...+..++|++ 
T Consensus       113 ~v~sla~sp-d~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~--~~~~~v~~l~fs~~  189 (356)
T 2w18_A          113 EIRALFCSS-DDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQF--LMPPEETILTFAEV  189 (356)
T ss_dssp             EEEEECC-------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEE--ECCCSSCEEEEEEE
T ss_pred             ceEEEEECC-CccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeec--cCCCceeeEEeecc
Confidence            467777777 6    666666553                    889999998 5577777776  6666777777774 


Q ss_pred             -CCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEE------------EEEeCCCcEE
Q 004969          509 -KYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELF------------LASGYSKNIA  575 (721)
Q Consensus       509 -~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~l------------ls~g~Dg~Ir  575 (721)
                       .++..|++|+.|++|+|||+.+++.. ..+.++..     +...+.+++|+|++..+            ++|+.|++|+
T Consensus       190 ~g~~~~LaSgS~D~TIkIWDl~TGk~l-~tL~g~~~-----~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIk  263 (356)
T 2w18_A          190 QGMQEALLGTTIMNNIVIWNLKTGQLL-KKMHIDDS-----YQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLI  263 (356)
T ss_dssp             ETSTTEEEEEETTSEEEEEETTTCCEE-EEEECCC--------CCCEEEEEEETTEEEEEEC------------CCEEEE
T ss_pred             CCCCceEEEecCCCcEEEEECCCCcEE-EEEcCCCc-----ceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEE
Confidence             36789999999999999999997752 21211110     11357788899988776            4566799999


Q ss_pred             EEECCCCcEEEEEc----cccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCe-E-EEEEecCC
Q 004969          576 LYDINSGRRLQVFA----DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGN-V-MVCFSPDD  649 (721)
Q Consensus       576 lWDl~s~~~v~~l~----~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~-v-sl~fSpdg  649 (721)
                      +||..+++.+..+.    .+|...+.+..++  + .++++|+.|++|+|||+.++++  +.++.+|... + +++|||||
T Consensus       264 lWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g-~~lASgS~DgTIkIWDl~tGk~--l~tL~gH~~~vvs~vafSPDG  338 (356)
T 2w18_A          264 VINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--D-HCAAAILTSGTIAIWDLLLGQC--TALLPPVSDQHWSFVKWSGTD  338 (356)
T ss_dssp             EEETTTTEEEEEEEECCCTTCCCCEEEEEEE--T-TEEEEEETTSCEEEEETTTCSE--EEEECCC--CCCCEEEECSSS
T ss_pred             EEECCCCEEEEEEEeeccCCCcceeEccccC--C-CEEEEEcCCCcEEEEECCCCcE--EEEecCCCCCeEEEEEECCCC
Confidence            99999999887662    2376666555554  5 6899999999999999999965  5566666553 4 58999999


Q ss_pred             CEEEEEeCCCcEEEEEcC
Q 004969          650 HYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       650 ~~Lasgs~Dg~I~VWDl~  667 (721)
                      ++|++|+.|++|+|||+.
T Consensus       339 ~~LaSGS~D~TIklWd~~  356 (356)
T 2w18_A          339 SHLLAGQKDGNIFVYHYS  356 (356)
T ss_dssp             SEEEEECTTSCEEEEEEC
T ss_pred             CEEEEEECCCcEEEecCC
Confidence            999999999999999963

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.89  E-value=2.4e-22  Score=239.07  Aligned_cols=203  Identities=13%  Similarity=0.166  Sum_probs=168.0

Q ss_pred             CeEEEEEeCCC--CCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCC-CCEEEEEeCCCeEEEEEcCCC
Q 004969          455 RPRQFEYHPSI--SCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKY-PSKLIAGSDNGSLKLYDIRHM  531 (721)
Q Consensus       455 ~V~~lafsP~d--g~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d-~~~LaSgs~DGtVrIWDi~~~  531 (721)
                      .|++++|+| +  ++++++|+.||+|++||+.+++........+|...|++++|+|.. +..+++|+.||+|++||+.++
T Consensus        55 ~V~~l~~s~-~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~  133 (753)
T 3jro_A           55 PVWRVDWAH-PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN  133 (753)
T ss_dssp             CEEEEEECC-TTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSS
T ss_pred             ceEEEEecC-CCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecC
Confidence            599999998 5  899999999999999999998743333334899999999999432 899999999999999999886


Q ss_pred             CCcccccccCcceeEeccCCCeEEEEEec-------------CCCEEEEEeCCCcEEEEECCCC----cEEEEEccccCC
Q 004969          532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNS-------------MDELFLASGYSKNIALYDINSG----RRLQVFADMHKE  594 (721)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp-------------~~~~lls~g~Dg~IrlWDl~s~----~~v~~l~~~h~~  594 (721)
                      ...       .......|...|.+++|+|             ++..+++++.||.|++||++++    .....+.+ |..
T Consensus       134 ~~~-------~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~-h~~  205 (753)
T 3jro_A          134 GTT-------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG-HSD  205 (753)
T ss_dssp             SCC-------CCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECC-CSS
T ss_pred             CCc-------ceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecC-CCC
Confidence            431       1122345667899999999             4889999999999999999987    45566776 999


Q ss_pred             CeEEEEEcCC---CCcEEEEEECCCcEEEEECCCCCce---eEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          595 HINVVKFSNH---SPSIFATSSFDQDVKLWDLRQKPIQ---PCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       595 ~V~sI~fsPd---g~~lLaSgs~DgtIrIWDlrs~~~~---~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                      .|.+++|+|+   + .++++|+.||+|++||++++...   .......+...+ +++|+|+|+++++|+.||.|++|+++
T Consensus       206 ~V~~l~~sp~~~~~-~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~  284 (753)
T 3jro_A          206 WVRDVAWSPTVLLR-SYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (753)
T ss_dssp             CEEEEEECCCCSSS-EEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred             cEEEEEeccCCCCC-CEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence            9999999999   6 89999999999999999986321   122333455555 89999999999999999999999987

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.89  E-value=4.2e-22  Score=241.72  Aligned_cols=145  Identities=12%  Similarity=0.131  Sum_probs=114.4

Q ss_pred             eEEEEEecCCCEEEEEeCCCcEEEEECCCCcEE----EEE--c----cccCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 004969          553 LTSVHVNSMDELFLASGYSKNIALYDINSGRRL----QVF--A----DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWD  622 (721)
Q Consensus       553 V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v----~~l--~----~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWD  622 (721)
                      +.+++|+|+++.+++++.|++|++||+.++...    ...  .    .+|...|.+++|+|++ .+||+|+.||+|+|||
T Consensus       438 v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg-~~LAsgs~DgtV~lwd  516 (902)
T 2oaj_A          438 KRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAET-LELAVSIETGDVVLFK  516 (902)
T ss_dssp             CCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTT-TEEEEEETTSCEEEEE
T ss_pred             CCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCC-CeEEEEecCcEEEEEE
Confidence            334455678889999999999999999887421    111  1    1388999999999999 8999999999999999


Q ss_pred             CCCCCc-------------------------------------------eeEEEecCCCCeE-EEEEecCCCEEEEEeCC
Q 004969          623 LRQKPI-------------------------------------------QPCYTASSSKGNV-MVCFSPDDHYLLGKGSG  658 (721)
Q Consensus       623 lrs~~~-------------------------------------------~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~D  658 (721)
                      +.+++.                                           .++..+.+|.+.+ +++||||| +||+|+.|
T Consensus       517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D  595 (902)
T 2oaj_A          517 YEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAA  595 (902)
T ss_dssp             EEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETT
T ss_pred             ecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCC
Confidence            976521                                           2355677788777 89999999 99999999


Q ss_pred             CcEEEEEcCCCcc---------c-ccccCeEEEEEC-----CCCCcccccccEEEEecCC
Q 004969          659 TSMFVQSLRGDPF---------R-DFNMSILAAYTR-----PSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       659 g~I~VWDl~g~~l---------~-~~~~~V~~v~fs-----P~~~~~~v~v~lLASgs~~  703 (721)
                      ++|++||+++..+         . +|...|.+++|+     |++.    .-..|++|+..
T Consensus       596 ~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~----~~~~l~sgs~D  651 (902)
T 2oaj_A          596 GSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGY----SSILMVCGTDM  651 (902)
T ss_dssp             SEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSS----EEEEEEEEETT
T ss_pred             CcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCC----cceEEEEEecC
Confidence            9999999986432         1 566779999999     8741    01688888876

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.89  E-value=1.5e-22  Score=221.74  Aligned_cols=208  Identities=13%  Similarity=0.079  Sum_probs=141.8

Q ss_pred             CeEEEEEeC-------CCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEE
Q 004969          455 RPRQFEYHP-------SISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYD  527 (721)
Q Consensus       455 ~V~~lafsP-------~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWD  527 (721)
                      .|.+++|+|       .++++||+|+.|++|+|||+.++..+..+.  +|...|.+++|+|.++.+|++|+.||+|++||
T Consensus       138 ~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~--~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd  215 (393)
T 4gq1_A          138 FVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGY--PLSSPGISVQFRPSNPNQLIVGERNGNIRIFD  215 (393)
T ss_dssp             CEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEE--ECSSCEEEEEEETTEEEEEEEEETTSEEEEEE
T ss_pred             ceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeec--CCCCCcEEEEECCCCCceEEecCCCCEEEEEE
Confidence            699999997       367899999999999999998887776665  78899999999965667899999999999999


Q ss_pred             cCCCCCccccccc----------------CcceeEeccCCCeEEEEEe-cCCCEEEEEeCCCcEEEEECCCCcEEEEEcc
Q 004969          528 IRHMPPSIRGMHY----------------GAGTVTFDEFDQLTSVHVN-SMDELFLASGYSKNIALYDINSGRRLQVFAD  590 (721)
Q Consensus       528 i~~~~~~~~~~~~----------------~~~~~~~~~~~~V~sv~~s-p~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~  590 (721)
                      +.+++........                ........+...+.++.|+ +++..+++++.|+++++||+.+++....+..
T Consensus       216 ~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~  295 (393)
T 4gq1_A          216 WTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISD  295 (393)
T ss_dssp             TTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----------
T ss_pred             CCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEee
Confidence            9987652211110                0001112355678899987 6788999999999999999998877666654


Q ss_pred             ccCCCeEEEEEcC-------------------CCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCC
Q 004969          591 MHKEHINVVKFSN-------------------HSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDH  650 (721)
Q Consensus       591 ~h~~~V~sI~fsP-------------------dg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~  650 (721)
                       |...+..+.+.|                   .+..++++|+.||+|++||+.++....  ....+...+ +++|+|||+
T Consensus       296 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~--~~~~~~~~V~svafspdG~  372 (393)
T 4gq1_A          296 -STMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNS--IPIQLGMPIVDFCWHQDGS  372 (393)
T ss_dssp             ---------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCE--EEEECSSCEEEEEECTTSS
T ss_pred             -ecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEE--EecCCCCcEEEEEEcCCCC
Confidence             544444443333                   232467788899999999999886543  333444555 999999999


Q ss_pred             EEEEEeCCCcEEEEEcCC
Q 004969          651 YLLGKGSGTSMFVQSLRG  668 (721)
Q Consensus       651 ~Lasgs~Dg~I~VWDl~g  668 (721)
                      +||+++.+ .+.+|.+.|
T Consensus       373 ~LA~as~~-Gv~lvrL~g  389 (393)
T 4gq1_A          373 HLAIATEG-SVLLTRLMG  389 (393)
T ss_dssp             EEEEEESS-EEEEEEEGG
T ss_pred             EEEEEeCC-CeEEEEEeC
Confidence            99999854 576776653

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.89  E-value=1e-20  Score=209.34  Aligned_cols=213  Identities=13%  Similarity=0.260  Sum_probs=178.5

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|++++|++   +++++|+.||+|++||+.+++.+..+.  +|...|.+++|+   ++.+++|+.||+|++||+.+++..
T Consensus       161 ~v~~~~~~~---~~l~s~~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~---~~~l~s~s~dg~i~~wd~~~~~~~  232 (445)
T 2ovr_B          161 GVWSSQMRD---NIIISGSTDRTLKVWNAETGECIHTLY--GHTSTVRCMHLH---EKRVVSGSRDATLRVWDIETGQCL  232 (445)
T ss_dssp             CEEEEEEET---TEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEEE---TTEEEEEETTSEEEEEESSSCCEE
T ss_pred             CEEEEEecC---CEEEEEeCCCeEEEEECCcCcEEEEEC--CCCCcEEEEEec---CCEEEEEeCCCEEEEEECCCCcEE
Confidence            589999986   799999999999999999999998887  899999999985   578999999999999999986541


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF  614 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~  614 (721)
                               .....|...|.++++  ++..+++++.||.|++||+++++.+..+.+ |...|.+++|  ++ ..+++|+.
T Consensus       233 ---------~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~--~~-~~l~~~~~  297 (445)
T 2ovr_B          233 ---------HVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQG-HTNRVYSLQF--DG-IHVVSGSL  297 (445)
T ss_dssp             ---------EEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECC-CSSCEEEEEE--CS-SEEEEEET
T ss_pred             ---------EEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecC-CCCceEEEEE--CC-CEEEEEeC
Confidence                     112245677899998  788999999999999999999999999987 9999999999  55 78999999


Q ss_pred             CCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC-CCcc---cc---cccCeEEEEECCC
Q 004969          615 DQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR-GDPF---RD---FNMSILAAYTRPS  686 (721)
Q Consensus       615 DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~l---~~---~~~~V~~v~fsP~  686 (721)
                      ||.|++||+++++.  +..+.+|...+ ++.+  ++.++++|+.||.|++||++ +..+   ..   |...|.+++|++ 
T Consensus       298 d~~i~i~d~~~~~~--~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-  372 (445)
T 2ovr_B          298 DTSIRVWDVETGNC--IHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK-  372 (445)
T ss_dssp             TSCEEEEETTTCCE--EEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS-
T ss_pred             CCeEEEEECCCCCE--EEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC-
Confidence            99999999999854  55666777666 4554  67899999999999999997 4332   22   566899999964 


Q ss_pred             CCcccccccEEEEecCC
Q 004969          687 SKSEIVKVNLLASTDHC  703 (721)
Q Consensus       687 ~~~~~v~v~lLASgs~~  703 (721)
                              ..|++|+..
T Consensus       373 --------~~l~s~~~d  381 (445)
T 2ovr_B          373 --------NFVITSSDD  381 (445)
T ss_dssp             --------SEEEEEETT
T ss_pred             --------CEEEEEeCC
Confidence                    567777765

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.89  E-value=8.3e-22  Score=208.90  Aligned_cols=203  Identities=15%  Similarity=0.168  Sum_probs=159.9

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEee-CCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLK-KYPSKLIAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp-~d~~~LaSgs~DGtVrIWDi~~~~~  533 (721)
                      .|++++|+| ++++|++|+.||.|++||+.+++.+...   +|...|++++|++ +++.+|++++.||.|++||+++++.
T Consensus        88 ~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  163 (368)
T 3mmy_A           88 PVLDVCWSD-DGSKVFTASCDKTAKMWDLSSNQAIQIA---QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP  163 (368)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEE---ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC
T ss_pred             CEEEEEECc-CCCEEEEEcCCCcEEEEEcCCCCceeec---cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE
Confidence            599999999 9999999999999999999999877643   6889999999931 6778899999999999999998764


Q ss_pred             cccccccCccee---------------------------------EeccCCCeEEEEEecCCCE----EEEEeCCCcEEE
Q 004969          534 SIRGMHYGAGTV---------------------------------TFDEFDQLTSVHVNSMDEL----FLASGYSKNIAL  576 (721)
Q Consensus       534 ~~~~~~~~~~~~---------------------------------~~~~~~~V~sv~~sp~~~~----lls~g~Dg~Irl  576 (721)
                      ... ...+....                                 .......+.++.+.+....    +++++.||.|++
T Consensus       164 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i  242 (368)
T 3mmy_A          164 MMV-LQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAI  242 (368)
T ss_dssp             SEE-EECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEE
T ss_pred             EEE-EecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEE
Confidence            211 11111000                                 0011233555665555544    999999999999


Q ss_pred             EECCCC---cEEEEEccccCC------------CeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE
Q 004969          577 YDINSG---RRLQVFADMHKE------------HINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV  641 (721)
Q Consensus       577 WDl~s~---~~v~~l~~~h~~------------~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v  641 (721)
                      ||++..   ..+..+.+ |..            .|.+++|+|++ .++++|+.||.|++||+++++  .+..+.+|...+
T Consensus       243 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v  318 (368)
T 3mmy_A          243 HYINPPNPAKDNFTFKC-HRSNGTNTSAPQDIYAVNGIAFHPVH-GTLATVGSDGRFSFWDKDART--KLKTSEQLDQPI  318 (368)
T ss_dssp             EESSCSCHHHHSEEEEC-SEEC----CCCEEECCEEEEEECTTT-CCEEEEETTSCEEEEETTTTE--EEEECCCCSSCE
T ss_pred             EecCCCCccccceeeee-eecccccccccccccceEEEEEecCC-CEEEEEccCCeEEEEECCCCc--EEEEecCCCCCc
Confidence            999987   56677775 665            79999999999 799999999999999999874  466777777777


Q ss_pred             -EEEEecCCCEEEEEeCCCcEEEEEc
Q 004969          642 -MVCFSPDDHYLLGKGSGTSMFVQSL  666 (721)
Q Consensus       642 -sl~fSpdg~~Lasgs~Dg~I~VWDl  666 (721)
                       +++|+|+|++|++++.|+..+.|++
T Consensus       319 ~~~~~s~~g~~l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          319 SACCFNHNGNIFAYASSYDWSKGHEF  344 (368)
T ss_dssp             EEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred             eEEEECCCCCeEEEEecccccccccc
Confidence             8999999999999999886555543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.88  E-value=2e-20  Score=202.08  Aligned_cols=214  Identities=7%  Similarity=0.085  Sum_probs=169.7

Q ss_pred             CeEEEEEeCCCCCEE-EEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEE-EEEeCCCeEEEEEcCCCC
Q 004969          455 RPRQFEYHPSISCLM-VFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKL-IAGSDNGSLKLYDIRHMP  532 (721)
Q Consensus       455 ~V~~lafsP~dg~~L-asGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~L-aSgs~DGtVrIWDi~~~~  532 (721)
                      .+.+++|+| +++++ ++++.|++|++||+.+++.+..+..  + ..+.+++|+ ++++++ ++++.|+.|++||+.+++
T Consensus        33 ~~~~~~~s~-dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~--~-~~v~~~~~s-pdg~~l~~~~~~~~~v~v~d~~~~~  107 (391)
T 1l0q_A           33 NPMGAVISP-DGTKVYVANAHSNDVSIIDTATNNVIATVPA--G-SSPQGVAVS-PDGKQVYVTNMASSTLSVIDTTSNT  107 (391)
T ss_dssp             SEEEEEECT-TSSEEEEEEGGGTEEEEEETTTTEEEEEEEC--S-SSEEEEEEC-TTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             CcceEEECC-CCCEEEEECCCCCeEEEEECCCCeEEEEEEC--C-CCccceEEC-CCCCEEEEEECCCCEEEEEECCCCe
Confidence            388999999 77766 6777999999999999999888863  3 389999998 577766 555677999999999854


Q ss_pred             CcccccccCcceeEeccCCCeEEEEEecCCCEE-EEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEE
Q 004969          533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELF-LASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFAT  611 (721)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~l-ls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaS  611 (721)
                      .          ...+.+...+.+++|+|++..+ ++++.|+.|++||+.+++.+..+..  ...+.+++|+|++..++++
T Consensus       108 ~----------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~dg~~l~~~  175 (391)
T 1l0q_A          108 V----------AGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV--GRSPKGIAVTPDGTKVYVA  175 (391)
T ss_dssp             E----------EEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC--CSSEEEEEECTTSSEEEEE
T ss_pred             E----------EEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec--CCCcceEEECCCCCEEEEE
Confidence            3          2233445678999999999988 4566799999999999999988874  4567999999999545578


Q ss_pred             EECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEe---CCCcEEEEEcCC-Cccccc--ccCeEEEEECC
Q 004969          612 SSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKG---SGTSMFVQSLRG-DPFRDF--NMSILAAYTRP  685 (721)
Q Consensus       612 gs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs---~Dg~I~VWDl~g-~~l~~~--~~~V~~v~fsP  685 (721)
                      ++.|+.|++||+++++..  ..+..+....+++|+|+|+++++++   .++.|++||++. +.+..+  ...+..++|+|
T Consensus       176 ~~~~~~v~~~d~~~~~~~--~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~  253 (391)
T 1l0q_A          176 NFDSMSISVIDTVTNSVI--DTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTP  253 (391)
T ss_dssp             ETTTTEEEEEETTTTEEE--EEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECT
T ss_pred             eCCCCEEEEEECCCCeEE--EEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEcc
Confidence            888999999999988543  3344444445899999999999888   689999999983 332222  34678899999


Q ss_pred             CC
Q 004969          686 SS  687 (721)
Q Consensus       686 ~~  687 (721)
                      ++
T Consensus       254 dg  255 (391)
T 1l0q_A          254 DG  255 (391)
T ss_dssp             TS
T ss_pred             CC
Confidence            99

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.88  E-value=1.3e-20  Score=206.36  Aligned_cols=223  Identities=10%  Similarity=0.076  Sum_probs=180.8

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEE-EEEeCCCeEEEEEcCCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKL-IAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~L-aSgs~DGtVrIWDi~~~~~  533 (721)
                      .|.+++|+| ++.++++++.||.|++||+.+++.+..+.  .|...+.+++|+ +++..+ ++++.|+.|++||+.+++.
T Consensus       171 ~v~~~~~~~-~~~~~~s~~~d~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~l~~~~~~~~~i~~~d~~~~~~  246 (433)
T 3bws_A          171 FVETISIPE-HNELWVSQMQANAVHVFDLKTLAYKATVD--LTGKWSKILLYD-PIRDLVYCSNWISEDISVIDRKTKLE  246 (433)
T ss_dssp             EEEEEEEGG-GTEEEEEEGGGTEEEEEETTTCCEEEEEE--CSSSSEEEEEEE-TTTTEEEEEETTTTEEEEEETTTTEE
T ss_pred             ceeEEEEcC-CCEEEEEECCCCEEEEEECCCceEEEEEc--CCCCCeeEEEEc-CCCCEEEEEecCCCcEEEEECCCCcE
Confidence            589999999 89999999999999999999999988887  778899999998 566666 5556899999999987543


Q ss_pred             cccccccCcceeEeccCCCeEEEEEecCCCEEEEEe--------CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCC
Q 004969          534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG--------YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHS  605 (721)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g--------~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg  605 (721)
                                ...+.....+.+++|+|++..+++++        .|+.|++||+++++.+..+.  |...+.+++|+|++
T Consensus       247 ----------~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g  314 (433)
T 3bws_A          247 ----------IRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG--PPGNKRHIVSGNTE  314 (433)
T ss_dssp             ----------EEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE--EEECEEEEEECSST
T ss_pred             ----------EEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc--CCCCcceEEECCCC
Confidence                      22233345589999999999999988        48899999999998887775  67789999999999


Q ss_pred             CcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeC---------------CCcEEEEEcCC-C
Q 004969          606 PSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGS---------------GTSMFVQSLRG-D  669 (721)
Q Consensus       606 ~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~---------------Dg~I~VWDl~g-~  669 (721)
                      ..++++++.|+.|++||+.+++..  ..+.....+.+++|+|+|+++++++.               ||.|++||+.. .
T Consensus       315 ~~l~~~~~~~~~v~v~d~~~~~~~--~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~  392 (433)
T 3bws_A          315 NKIYVSDMCCSKIEVYDLKEKKVQ--KSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT  392 (433)
T ss_dssp             TEEEEEETTTTEEEEEETTTTEEE--EEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred             CEEEEEecCCCEEEEEECCCCcEE--EEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence            667788899999999999987543  34444455569999999999998876               57999999973 3


Q ss_pred             ccccc--ccCeEEEEECCCCCcccccccEEEEecC
Q 004969          670 PFRDF--NMSILAAYTRPSSKSEIVKVNLLASTDH  702 (721)
Q Consensus       670 ~l~~~--~~~V~~v~fsP~~~~~~v~v~lLASgs~  702 (721)
                      ....+  ...+..++|+|++       ..|++++.
T Consensus       393 ~~~~~~~~~~~~~~~~s~dg-------~~l~~~~~  420 (433)
T 3bws_A          393 VKEFWEAGNQPTGLDVSPDN-------RYLVISDF  420 (433)
T ss_dssp             EEEEEECSSSEEEEEECTTS-------CEEEEEET
T ss_pred             EEEEecCCCCCceEEEcCCC-------CEEEEEEC
Confidence            32222  4578999999999       77776654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.86  E-value=2.9e-20  Score=200.70  Aligned_cols=203  Identities=8%  Similarity=0.084  Sum_probs=148.5

Q ss_pred             eEEEEEeCCCCCEE-EEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC---
Q 004969          456 PRQFEYHPSISCLM-VFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM---  531 (721)
Q Consensus       456 V~~lafsP~dg~~L-asGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~---  531 (721)
                      +..+++.+ +++.+ ++|+.|++|++||..+++.+..+.   |...|.+++|++ +  .++++ .|+.|++||+.++   
T Consensus        61 ~~~~~~~~-~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~---~~~~v~~v~~~~-~--~~~~~-~~~~i~i~d~~~~~~~  132 (355)
T 3vu4_A           61 LSKVRMLH-RTNYVAFVTGVKEVVHIWDDVKKQDVSRIK---VDAPVKDLFLSR-E--FIVVS-YGDVISVFKFGNPWKR  132 (355)
T ss_dssp             CCEEEECT-TSSEEEEECSSTTEEEEEETTTTEEEEEEE---CSSCEEEEEECS-S--EEEEE-ETTEEEEEESSTTCCB
T ss_pred             eEEEEEcC-CCCEEEEEECCccEEEEEECCCCcEEEEEE---CCCceEEEEEcC-C--EEEEE-EcCEEEEEECCCCcee
Confidence            56678888 55555 678889999999999999988875   456899999863 2  22222 2445555555443   


Q ss_pred             -------------------------------------CCccccccc------Cc-ceeEeccCCCeEEEEEecCCCEEEE
Q 004969          532 -------------------------------------PPSIRGMHY------GA-GTVTFDEFDQLTSVHVNSMDELFLA  567 (721)
Q Consensus       532 -------------------------------------~~~~~~~~~------~~-~~~~~~~~~~V~sv~~sp~~~~lls  567 (721)
                                                           .........      .. ......|...|.+++|+|++..+++
T Consensus       133 ~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s  212 (355)
T 3vu4_A          133 ITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVAT  212 (355)
T ss_dssp             SSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             eEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEE
Confidence                                                 200000000      00 1122346678999999999999999


Q ss_pred             EeCCCc-EEEEECCCCcEEEEEcc-ccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEe-----------
Q 004969          568 SGYSKN-IALYDINSGRRLQVFAD-MHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTA-----------  634 (721)
Q Consensus       568 ~g~Dg~-IrlWDl~s~~~v~~l~~-~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~-----------  634 (721)
                      ++.|++ |++||+++++.+..+.. .|...|.+++|+|++ .++++++.|++|++||++.........+           
T Consensus       213 ~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~-~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~  291 (355)
T 3vu4_A          213 CSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDG-SKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQS  291 (355)
T ss_dssp             EETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTS-CEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCC
T ss_pred             EeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCC-CEEEEEECCCEEEEEEccCCCCcccccccceeecccccc
Confidence            999998 99999999999999983 499999999999999 7999999999999999986532222111           


Q ss_pred             ---------cCC--CCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          635 ---------SSS--KGNVMVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       635 ---------~~~--~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                               ...  .....++|+++|.++++++.||.+++|++.
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~  335 (355)
T 3vu4_A          292 EWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVV  335 (355)
T ss_dssp             SSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEE
T ss_pred             ccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEE
Confidence                     111  111368999999999999999999999987

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.86  E-value=1.3e-19  Score=195.71  Aligned_cols=210  Identities=13%  Similarity=0.137  Sum_probs=168.0

Q ss_pred             CEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEE-EEEeCCCeEEEEEcCCCCCcccccccCccee
Q 004969          467 CLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKL-IAGSDNGSLKLYDIRHMPPSIRGMHYGAGTV  545 (721)
Q Consensus       467 ~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~L-aSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~  545 (721)
                      .++++++.||.|++||+.+++.+..+.  .| ..+.+++|+ ++++++ ++++.|++|++||+.+++.          ..
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~--~~-~~~~~~~~s-~dg~~l~~~~~~d~~i~v~d~~~~~~----------~~   68 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIP--VG-SNPMGAVIS-PDGTKVYVANAHSNDVSIIDTATNNV----------IA   68 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEE--CS-SSEEEEEEC-TTSSEEEEEEGGGTEEEEEETTTTEE----------EE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEee--cC-CCcceEEEC-CCCCEEEEECCCCCeEEEEECCCCeE----------EE
Confidence            568899999999999999999988886  44 458999998 677765 7777999999999988543          23


Q ss_pred             EeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC
Q 004969          546 TFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLR  624 (721)
Q Consensus       546 ~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlr  624 (721)
                      .+.+...+.+++|+|++..+++++ .++.|++||+.+++.+..+.  +...+.+++|+|++..++++++.|+.|++||++
T Consensus        69 ~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~  146 (391)
T 1l0q_A           69 TVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK--TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTV  146 (391)
T ss_dssp             EEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             EEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe--CCCCcceEEECCCCCEEEEEeCCCCEEEEEECC
Confidence            344455899999999999887766 57999999999999988887  456789999999994455788889999999999


Q ss_pred             CCCceeEEEecCCCCeEEEEEecCCCEE-EEEeCCCcEEEEEcCCCcc-c--ccccCeEEEEECCCCCcccccccEEEEe
Q 004969          625 QKPIQPCYTASSSKGNVMVCFSPDDHYL-LGKGSGTSMFVQSLRGDPF-R--DFNMSILAAYTRPSSKSEIVKVNLLAST  700 (721)
Q Consensus       625 s~~~~~~~~~~~~~~~vsl~fSpdg~~L-asgs~Dg~I~VWDl~g~~l-~--~~~~~V~~v~fsP~~~~~~v~v~lLASg  700 (721)
                      +++.  ...+..+.....++|+|+|+++ ++++.++.|++||++.... .  .+...+..++|+|++       ..++++
T Consensus       147 ~~~~--~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g-------~~l~~~  217 (391)
T 1l0q_A          147 TKAV--INTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEG-------TKAYVT  217 (391)
T ss_dssp             TTEE--EEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTS-------SEEEEE
T ss_pred             CCcE--EEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCC-------CEEEEE
Confidence            8854  4445556666789999999988 5677889999999984332 1  234578899999999       555555


Q ss_pred             c
Q 004969          701 D  701 (721)
Q Consensus       701 s  701 (721)
                      +
T Consensus       218 ~  218 (391)
T 1l0q_A          218 N  218 (391)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.85  E-value=1.3e-19  Score=198.52  Aligned_cols=224  Identities=8%  Similarity=0.071  Sum_probs=177.7

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeec---CCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPS---FGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP  532 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~---~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~  532 (721)
                      +.+++|+| ++.++++++.++.|++||+.+++.......   .+|...|.+++|+ +++.++++++.|+.|++||+++++
T Consensus       125 ~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~s~~~d~~v~~~d~~~~~  202 (433)
T 3bws_A          125 PKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIP-EHNELWVSQMQANAVHVFDLKTLA  202 (433)
T ss_dssp             BCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEG-GGTEEEEEEGGGTEEEEEETTTCC
T ss_pred             ceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEc-CCCEEEEEECCCCEEEEEECCCce
Confidence            66899999 889999999999999999999988875432   3788899999996 788999999999999999998754


Q ss_pred             CcccccccCcceeEe-ccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEE
Q 004969          533 PSIRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFA  610 (721)
Q Consensus       533 ~~~~~~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLa  610 (721)
                      ..          ..+ .+...+.+++|+|++..+++++ .|+.|++||+++++.+..+.  +...+.+++|+|++ ..++
T Consensus       203 ~~----------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g-~~l~  269 (433)
T 3bws_A          203 YK----------ATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD--KIGLPRGLLLSKDG-KELY  269 (433)
T ss_dssp             EE----------EEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC--CCSEEEEEEECTTS-SEEE
T ss_pred             EE----------EEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec--CCCCceEEEEcCCC-CEEE
Confidence            31          122 3456789999999999887666 68999999999999988887  44569999999999 6777


Q ss_pred             EEE--------CCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEE-EEEeCCCcEEEEEcCCCc-cc--ccccCe
Q 004969          611 TSS--------FDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYL-LGKGSGTSMFVQSLRGDP-FR--DFNMSI  678 (721)
Q Consensus       611 Sgs--------~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~L-asgs~Dg~I~VWDl~g~~-l~--~~~~~V  678 (721)
                      +++        .|+.|++||+++++.....  ........++|+|+++++ ++++.++.|++||+.... ..  .+...+
T Consensus       270 ~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~  347 (433)
T 3bws_A          270 IAQFSASNQESGGGRLGIYSMDKEKLIDTI--GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKP  347 (433)
T ss_dssp             EEEEESCTTCSCCEEEEEEETTTTEEEEEE--EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred             EEECCCCccccCCCeEEEEECCCCcEEeec--cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCC
Confidence            777        5889999999987543333  222244589999999865 556889999999998432 22  235678


Q ss_pred             EEEEECCCCCcccccccEEEEecCC
Q 004969          679 LAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       679 ~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      ..++|+|++       ..+++++..
T Consensus       348 ~~~~~s~dg-------~~l~~~~~~  365 (433)
T 3bws_A          348 NTIALSPDG-------KYLYVSCRG  365 (433)
T ss_dssp             EEEEECTTS-------SEEEEEECC
T ss_pred             CeEEEcCCC-------CEEEEEecC
Confidence            999999999       666666543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.83  E-value=1.1e-18  Score=187.13  Aligned_cols=233  Identities=9%  Similarity=0.019  Sum_probs=149.9

Q ss_pred             eEEEEEeCCCCC--EEEEEECCCeEEEEECCCC---eEEEEeecCCCCCC-------------------------eEEEE
Q 004969          456 PRQFEYHPSISC--LMVFGTLDGEIVVVNHENE---NIVSYIPSFGAMNS-------------------------VLGLC  505 (721)
Q Consensus       456 V~~lafsP~dg~--~LasGs~DG~I~IWdl~tg---~~i~~l~~~~H~~~-------------------------V~sl~  505 (721)
                      +.++-|-..+.+  -+++++ ..+|++|+..++   +.++++.  .|..+                         |.+++
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla  118 (356)
T 2w18_A           42 VSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWH--FAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALF  118 (356)
T ss_dssp             EEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEE--CCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEEC
T ss_pred             EeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEe--ccCceeEEEEEcCcccceeeeeeccccccceEEEE
Confidence            556666552221  455555 568999999988   6777766  45444                         45555


Q ss_pred             EeeCC----CCEEEEEeCCCeEEEEEcCCCCCcccccccCcc--------------eeEeccCCCeEEEEEec---CCCE
Q 004969          506 WLKKY----PSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAG--------------TVTFDEFDQLTSVHVNS---MDEL  564 (721)
Q Consensus       506 fsp~d----~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~--------------~~~~~~~~~V~sv~~sp---~~~~  564 (721)
                      |+ ++    +.++++++.  .+++|++.+++.......++..              .....|...+..++|++   ++..
T Consensus       119 ~s-pd~~~~~~~l~s~g~--~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~  195 (356)
T 2w18_A          119 CS-SDDESEKQVLLKSGN--IKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEA  195 (356)
T ss_dssp             C-------CCEEEEEEEE--EEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTE
T ss_pred             EC-CCccccccEEEeCCC--eEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCce
Confidence            55 45    567777663  2444444332221111111111              11223455678888888   6789


Q ss_pred             EEEEeCCCcEEEEECCCCcEEEEEcccc--CCCeEEEEEcCCCCcEE------------EEEECCCcEEEEECCCCCcee
Q 004969          565 FLASGYSKNIALYDINSGRRLQVFADMH--KEHINVVKFSNHSPSIF------------ATSSFDQDVKLWDLRQKPIQP  630 (721)
Q Consensus       565 lls~g~Dg~IrlWDl~s~~~v~~l~~~h--~~~V~sI~fsPdg~~lL------------aSgs~DgtIrIWDlrs~~~~~  630 (721)
                      +++++.|++|+|||+++|+.++++.+.|  ...+.+++|+|+| .++            ++|+.|++|++||..+++...
T Consensus       196 LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG-~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~  274 (356)
T 2w18_A          196 LLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMG-LLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVG  274 (356)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETT-EEEEEEC------------CCEEEEEEETTTTEEEE
T ss_pred             EEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCC-CEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEE
Confidence            9999999999999999999999998522  3467888999998 554            678899999999999986544


Q ss_pred             EEEe---cCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC-CCc---ccccccCeE-EEEECCCCCcccccccEEEEecC
Q 004969          631 CYTA---SSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR-GDP---FRDFNMSIL-AAYTRPSSKSEIVKVNLLASTDH  702 (721)
Q Consensus       631 ~~~~---~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~---l~~~~~~V~-~v~fsP~~~~~~v~v~lLASgs~  702 (721)
                      +...   .+|.... +..+.++.++++|+.|++|+|||+. |+.   +.+|...+. .++|+|++       .+|+||+.
T Consensus       275 v~~~~~p~Gh~~~~-lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG-------~~LaSGS~  346 (356)
T 2w18_A          275 VMLYCLPPGQAGRF-LEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTD-------SHLLAGQK  346 (356)
T ss_dssp             EEEECCCTTCCCCE-EEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSS-------SEEEEECT
T ss_pred             EEEeeccCCCccee-EccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCC-------CEEEEEEC
Confidence            4332   3444332 2333348899999999999999998 443   444555444 58999999       99999997


Q ss_pred             C
Q 004969          703 C  703 (721)
Q Consensus       703 ~  703 (721)
                      .
T Consensus       347 D  347 (356)
T 2w18_A          347 D  347 (356)
T ss_dssp             T
T ss_pred             C
Confidence            6

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.81  E-value=6e-18  Score=186.99  Aligned_cols=212  Identities=15%  Similarity=0.076  Sum_probs=165.7

Q ss_pred             CeEEEEEeCCCCCEEEEEECCC---eEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEE-EEeCCCe--EEEEEc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDG---EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLI-AGSDNGS--LKLYDI  528 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG---~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~La-Sgs~DGt--VrIWDi  528 (721)
                      .|.+++|+| ++++|++++.++   .|++||+.+++... +.  .|...+.+++|+ ++++.|+ +++.||.  |.+||+
T Consensus       180 ~v~~~~~Sp-dg~~la~~s~~~~~~~i~~~d~~tg~~~~-l~--~~~~~~~~~~~s-pdg~~la~~~~~~g~~~i~~~d~  254 (415)
T 2hqs_A          180 PLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQ-VA--SFPRHNGAPAFS-PDGSKLAFALSKTGSLNLYVMDL  254 (415)
T ss_dssp             CEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEE-EE--CCSSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEET
T ss_pred             cceeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCcEEE-ee--cCCCcccCEEEc-CCCCEEEEEEecCCCceEEEEEC
Confidence            589999999 999999999885   99999999988754 33  677889999999 6888777 6776655  999999


Q ss_pred             CCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-CC--cEEEEECCCCcEEEEEccccCCCeEEEEEcCCC
Q 004969          529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-SK--NIALYDINSGRRLQVFADMHKEHINVVKFSNHS  605 (721)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-Dg--~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg  605 (721)
                      .+++.  .        ....+...+.+++|+|++..+++++. ++  .|++||+.+++.. .+.. +...+.+++|+|+|
T Consensus       255 ~~~~~--~--------~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~-~~~~~~~~~~spdG  322 (415)
T 2hqs_A          255 ASGQI--R--------QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITW-EGSQNQDADVSSDG  322 (415)
T ss_dssp             TTCCE--E--------ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCC-SSSEEEEEEECTTS
T ss_pred             CCCCE--E--------eCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEec-CCCcccCeEECCCC
Confidence            87543  1        11223456899999999999998886 44  6888899887743 3443 77789999999999


Q ss_pred             CcEEEEEECC---CcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCC---cEEEEEcCCCc---cccccc
Q 004969          606 PSIFATSSFD---QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGT---SMFVQSLRGDP---FRDFNM  676 (721)
Q Consensus       606 ~~lLaSgs~D---gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg---~I~VWDl~g~~---l~~~~~  676 (721)
                       .++++++.+   +.|++||+.+++..   .+..+....+++|+|+|++|++++.++   .|++||+.+..   +..+..
T Consensus       323 -~~l~~~~~~~g~~~i~~~d~~~~~~~---~l~~~~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~  398 (415)
T 2hqs_A          323 -KFMVMVSSNGGQQHIAKQDLATGGVQ---VLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDG  398 (415)
T ss_dssp             -SEEEEEEECSSCEEEEEEETTTCCEE---ECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSS
T ss_pred             -CEEEEEECcCCceEEEEEECCCCCEE---EecCCCCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCCCC
Confidence             677766654   58999999987642   334444455899999999999888777   79999998654   445567


Q ss_pred             CeEEEEECCCC
Q 004969          677 SILAAYTRPSS  687 (721)
Q Consensus       677 ~V~~v~fsP~~  687 (721)
                      .|..++|+|..
T Consensus       399 ~v~~~~~~~~~  409 (415)
T 2hqs_A          399 QVKFPAWSPYL  409 (415)
T ss_dssp             EEEEEEECCCC
T ss_pred             CCcCCcccccc
Confidence            89999999986

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.78  E-value=8.4e-18  Score=171.79  Aligned_cols=224  Identities=8%  Similarity=0.014  Sum_probs=163.2

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCC-CeEEEEeecCCC-CCCeEEEEEeeCCCCEEEEEe--CCCeEEEEEcCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHEN-ENIVSYIPSFGA-MNSVLGLCWLKKYPSKLIAGS--DNGSLKLYDIRH  530 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~t-g~~i~~l~~~~H-~~~V~sl~fsp~d~~~LaSgs--~DGtVrIWDi~~  530 (721)
                      .|.+++|+| +++++++++ ++.|++||+.+ ++......  +| ...+.+++|+ +++++|++++  .++.++||.+..
T Consensus        43 ~v~~~~~sp-dg~~l~~~~-~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~l~~~~~  117 (297)
T 2ojh_A           43 LFEAPNWSP-DGKYLLLNS-EGLLYRLSLAGDPSPEKVDT--GFATICNNDHGIS-PDGALYAISDKVEFGKSAIYLLPS  117 (297)
T ss_dssp             CCEEEEECT-TSSEEEEEE-TTEEEEEESSSCCSCEECCC--TTCCCBCSCCEEC-TTSSEEEEEECTTTSSCEEEEEET
T ss_pred             ceEeeEECC-CCCEEEEEc-CCeEEEEeCCCCCCceEecc--ccccccccceEEC-CCCCEEEEEEeCCCCcceEEEEEC
Confidence            489999999 999999987 78999999998 77765554  33 4678899998 7889999988  445666666543


Q ss_pred             CCCcccccccCcceeEeccCCCeEEEEEecCCCEEE-EEeCCCcEEEEECC--CCcEEEEEccccCCCeEEEEEcCCCCc
Q 004969          531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFL-ASGYSKNIALYDIN--SGRRLQVFADMHKEHINVVKFSNHSPS  607 (721)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~ll-s~g~Dg~IrlWDl~--s~~~v~~l~~~h~~~V~sI~fsPdg~~  607 (721)
                      ....         ...+.....+..++|+|++..++ +++.++.+++|++.  +++ ...+.. +...+.+++|+|++ .
T Consensus       118 ~~~~---------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~-~~~~~~~~~~s~dg-~  185 (297)
T 2ojh_A          118 TGGT---------PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-ETRLTH-GEGRNDGPDYSPDG-R  185 (297)
T ss_dssp             TCCC---------CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC-EEECCC-SSSCEEEEEECTTS-S
T ss_pred             CCCc---------eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCc-ceEccc-CCCccccceECCCC-C
Confidence            2111         11222333578899999999888 56678999999864  344 344544 78899999999999 5


Q ss_pred             EEEEE-ECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCC-----------CcEEEEEcCCCcc---
Q 004969          608 IFATS-SFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSG-----------TSMFVQSLRGDPF---  671 (721)
Q Consensus       608 lLaSg-s~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~D-----------g~I~VWDl~g~~l---  671 (721)
                      .++.+ ..++.+++|++.... .....+..+...+ .++|+|+|++|++++.+           +.|++||+.+...   
T Consensus       186 ~l~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~  264 (297)
T 2ojh_A          186 WIYFNSSRTGQMQIWRVRVDG-SSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETL  264 (297)
T ss_dssp             EEEEEECTTSSCEEEEEETTS-SCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEE
T ss_pred             EEEEEecCCCCccEEEECCCC-CCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceee
Confidence            55554 469999999986321 1234455555555 79999999999988765           5699999985432   


Q ss_pred             c---ccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          672 R---DFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       672 ~---~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      .   .+...+..+.|+|++       ..|++++..
T Consensus       265 ~~~~~~~~~~~~~~~spdg-------~~l~~~~~~  292 (297)
T 2ojh_A          265 FDLFGGQGTMNSPNWSPDG-------DEFAYVRYF  292 (297)
T ss_dssp             EEEEESTTTSCSCCBCTTS-------SEEEEEEEC
T ss_pred             eccCCCCcccccceECCCC-------CEEEEEEec
Confidence            1   345578889999999       777777665

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.77  E-value=9.7e-17  Score=177.30  Aligned_cols=211  Identities=11%  Similarity=0.040  Sum_probs=157.5

Q ss_pred             CCEEEEEECC------CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCC---eEEEEEcCCCCCccc
Q 004969          466 SCLMVFGTLD------GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG---SLKLYDIRHMPPSIR  536 (721)
Q Consensus       466 g~~LasGs~D------G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DG---tVrIWDi~~~~~~~~  536 (721)
                      +..++.++.+      ++|++||+..+ ....+.  +|...|.+++|+ ++++.|++++.++   .|++||+.+++.   
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~-~~~~l~--~~~~~v~~~~~S-pdg~~la~~s~~~~~~~i~~~d~~tg~~---  215 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGY-NQFVVH--RSPQPLMSPAWS-PDGSKLAYVTFESGRSALVIQTLANGAV---  215 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSC-SCEEEE--EESSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTTCCE---
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCC-CCEEEe--CCCCcceeeEEc-CCCCEEEEEEecCCCcEEEEEECCCCcE---
Confidence            4566666554      79999999854 445555  678899999999 7899999999885   999999998653   


Q ss_pred             ccccCcceeEeccCCCeEEEEEecCCCEEE-EEeCCC--cEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969          537 GMHYGAGTVTFDEFDQLTSVHVNSMDELFL-ASGYSK--NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS  613 (721)
Q Consensus       537 ~~~~~~~~~~~~~~~~V~sv~~sp~~~~ll-s~g~Dg--~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs  613 (721)
                             .....+...+.+++|+|++..++ +++.++  .|++||+.+++. ..+.. |...+.+++|+|+| +.+++++
T Consensus       216 -------~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~-~~~~~~~~~~spdg-~~l~~~s  285 (415)
T 2hqs_A          216 -------RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTD-GRSNNTEPTWFPDS-QNLAFTS  285 (415)
T ss_dssp             -------EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCC-CSSCEEEEEECTTS-SEEEEEE
T ss_pred             -------EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcC-CCCcccceEECCCC-CEEEEEE
Confidence                   11223445789999999999888 445554  499999998876 45554 88899999999999 6777666


Q ss_pred             C-CC--cEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCC---CcEEEEEcCCCccccc--ccCeEEEEEC
Q 004969          614 F-DQ--DVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSG---TSMFVQSLRGDPFRDF--NMSILAAYTR  684 (721)
Q Consensus       614 ~-Dg--tIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~D---g~I~VWDl~g~~l~~~--~~~V~~v~fs  684 (721)
                      . ++  .|.+||+.+++..   .+..+...+ .++|+|+|++|++++.+   +.|++||+.+......  ...+..++|+
T Consensus       286 ~~~g~~~i~~~d~~~~~~~---~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~s  362 (415)
T 2hqs_A          286 DQAGRPQVYKVNINGGAPQ---RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLA  362 (415)
T ss_dssp             CTTSSCEEEEEETTSSCCE---ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEEC
T ss_pred             CCCCCcEEEEEECCCCCEE---EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCCCcCCeEEc
Confidence            5 45  6777899887532   233344455 89999999999988764   5899999985433222  2378999999


Q ss_pred             CCCCcccccccEEEEecCC
Q 004969          685 PSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       685 P~~~~~~v~v~lLASgs~~  703 (721)
                      |++       ..|++++..
T Consensus       363 pdg-------~~l~~~s~~  374 (415)
T 2hqs_A          363 PNG-------TMVIYSSSQ  374 (415)
T ss_dssp             TTS-------SEEEEEEEE
T ss_pred             CCC-------CEEEEEEcC
Confidence            999       666666643

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.75  E-value=3.2e-16  Score=164.63  Aligned_cols=221  Identities=11%  Similarity=0.157  Sum_probs=154.0

Q ss_pred             CeEEEEEeCCCCCEEEEEECC-CeEEEEECC--CCeE--EEEeecCCCCCCeEEEEEeeCCCCEEEEEe-CCCeEEEEEc
Q 004969          455 RPRQFEYHPSISCLMVFGTLD-GEIVVVNHE--NENI--VSYIPSFGAMNSVLGLCWLKKYPSKLIAGS-DNGSLKLYDI  528 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~D-G~I~IWdl~--tg~~--i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs-~DGtVrIWDi  528 (721)
                      .|.+++|+| +++++++++.+ +.|.+|++.  ++..  +..+.  .+ ..+..++|+ ++++++++++ .++.|.+||+
T Consensus        39 ~~~~~~~sp-dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~s-~dg~~l~~~~~~~~~i~~~d~  113 (343)
T 1ri6_A           39 QVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA--LP-GSLTHISTD-HQGQFVFVGSYNAGNVSVTRL  113 (343)
T ss_dssp             CCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE--CS-SCCSEEEEC-TTSSEEEEEETTTTEEEEEEE
T ss_pred             CCceEEECC-CCCEEEEeecCCCeEEEEEecCCCCceeeccccc--cC-CCCcEEEEc-CCCCEEEEEecCCCeEEEEEC
Confidence            477899999 89988888876 999999997  5653  33443  23 378899998 6777776655 5899999999


Q ss_pred             CCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCC-CcEEE----EEccccCCCeEEEEEc
Q 004969          529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINS-GRRLQ----VFADMHKEHINVVKFS  602 (721)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s-~~~v~----~l~~~h~~~V~sI~fs  602 (721)
                      ..+..       ............+.+++|+|++..+++++ .++.|++||+.+ ++...    .+.......+..++|+
T Consensus       114 ~~~~~-------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (343)
T 1ri6_A          114 EDGLP-------VGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFH  186 (343)
T ss_dssp             ETTEE-------EEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEEC
T ss_pred             CCCcc-------ccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEEC
Confidence            52211       01122233445688999999999888888 789999999987 65432    2232234578899999


Q ss_pred             CCCCcEEEEEECCCcEEEEECCC--CCceeEEEe---cCC----CCeEEEEEecCCCEEEEEe-CCCcEEEEEcC--CCc
Q 004969          603 NHSPSIFATSSFDQDVKLWDLRQ--KPIQPCYTA---SSS----KGNVMVCFSPDDHYLLGKG-SGTSMFVQSLR--GDP  670 (721)
Q Consensus       603 Pdg~~lLaSgs~DgtIrIWDlrs--~~~~~~~~~---~~~----~~~vsl~fSpdg~~Lasgs-~Dg~I~VWDl~--g~~  670 (721)
                      |++..+++++..++.|++||+..  +........   ...    .....++|+|+|++|+++. .++.|++|++.  +..
T Consensus       187 pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~  266 (343)
T 1ri6_A          187 PNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSV  266 (343)
T ss_dssp             TTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCC
T ss_pred             CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCc
Confidence            99943555566899999999954  433222222   111    1233799999999887554 78999999997  222


Q ss_pred             cc---cc--ccCeEEEEECCCC
Q 004969          671 FR---DF--NMSILAAYTRPSS  687 (721)
Q Consensus       671 l~---~~--~~~V~~v~fsP~~  687 (721)
                      ..   ..  ...+..++|+|++
T Consensus       267 ~~~~~~~~~~~~~~~~~~s~dg  288 (343)
T 1ri6_A          267 LSKEGFQPTETQPRGFNVDHSG  288 (343)
T ss_dssp             EEEEEEEECSSSCCCEEECTTS
T ss_pred             eEEeeeecCCCccceEEECCCC
Confidence            11   11  2347789999999

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.75  E-value=6.9e-17  Score=179.96  Aligned_cols=208  Identities=11%  Similarity=0.023  Sum_probs=148.6

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCC----------eEEEEee---cCCCCCCeEEEEEeeCCCCEEE----EE
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENE----------NIVSYIP---SFGAMNSVLGLCWLKKYPSKLI----AG  517 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg----------~~i~~l~---~~~H~~~V~sl~fsp~d~~~La----Sg  517 (721)
                      .+..+++++ ++.++++|+.+| |+||+....          .......   ...+...|.+++|+ +++++|+    +|
T Consensus        38 ~~n~lavs~-~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s-pdg~~lav~~~sg  114 (434)
T 2oit_A           38 RSSLLAVSN-KYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALS-CDNLTLSACMMSS  114 (434)
T ss_dssp             CCBCEEEET-TTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEEC-TTSCEEEEEEEET
T ss_pred             CccEEEEec-CCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEc-CCCCEEEEEEecc
Confidence            367899999 889999999998 999875310          0111110   01356789999998 6888888    78


Q ss_pred             eCCCeEEEEEcCCCCCcc-cccccCcceeE-eccCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCcEEEEEccccCC
Q 004969          518 SDNGSLKLYDIRHMPPSI-RGMHYGAGTVT-FDEFDQLTSVHVNSM-DELFLASGYSKNIALYDINSGRRLQVFADMHKE  594 (721)
Q Consensus       518 s~DGtVrIWDi~~~~~~~-~~~~~~~~~~~-~~~~~~V~sv~~sp~-~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~  594 (721)
                      +.|++|++||+.+..... ........... ..|...|.+++|+|+ +..+++++.||+|++||++++..+....+ |..
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~-~~~  193 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLP-STV  193 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEEC-GGG
T ss_pred             CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccC-CCC
Confidence            899999999997641000 00000000111 125678999999998 78899999999999999999977766665 899


Q ss_pred             CeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecC-----CCCeE-EEEEecCCCEEEEE-eCCC------cE
Q 004969          595 HINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASS-----SKGNV-MVCFSPDDHYLLGK-GSGT------SM  661 (721)
Q Consensus       595 ~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~-----~~~~v-sl~fSpdg~~Lasg-s~Dg------~I  661 (721)
                      .|.+++|+|+| .+|++|+.||+|++||++ +........+.     |...+ +++|++++.++++. +.+|      .+
T Consensus       194 ~v~~v~wspdg-~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v  271 (434)
T 2oit_A          194 AVTSVCWSPKG-KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDV  271 (434)
T ss_dssp             CEEEEEECTTS-SCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEE
T ss_pred             ceeEEEEcCCC-CEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCce
Confidence            99999999998 899999999999999998 43332222211     11234 89999999888654 3443      38


Q ss_pred             EEEEcCC
Q 004969          662 FVQSLRG  668 (721)
Q Consensus       662 ~VWDl~g  668 (721)
                      ++|+++.
T Consensus       272 ~i~~l~~  278 (434)
T 2oit_A          272 VMALLPK  278 (434)
T ss_dssp             EEEECCC
T ss_pred             EEEEecc
Confidence            9999984

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.73  E-value=1.5e-15  Score=160.58  Aligned_cols=217  Identities=10%  Similarity=0.051  Sum_probs=162.1

Q ss_pred             eEEEEEeCCCCC-EEEEEECCCeEEEEECCCCeEEEEeecCCCCC-------CeEEEEEeeCCCCEEEEEe--CCCeEEE
Q 004969          456 PRQFEYHPSISC-LMVFGTLDGEIVVVNHENENIVSYIPSFGAMN-------SVLGLCWLKKYPSKLIAGS--DNGSLKL  525 (721)
Q Consensus       456 V~~lafsP~dg~-~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~-------~V~sl~fsp~d~~~LaSgs--~DGtVrI  525 (721)
                      +..++|+| +++ +++++..++.|.+||..+++.+..+.......       .+.+++|+ ++++++++++  .++.|.+
T Consensus        91 ~~~~~~s~-dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~~i~~  168 (353)
T 3vgz_A           91 PFGATINN-TTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVAD-DATNTVYISGIGKESVIWV  168 (353)
T ss_dssp             CCSEEEET-TTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEE-TTTTEEEEEEESSSCEEEE
T ss_pred             cceEEECC-CCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEEC-CCCCEEEEEecCCCceEEE
Confidence            66789999 777 45555668999999999999988877421111       27889998 6777666665  5889999


Q ss_pred             EEcCCCCCcccccccCcceeEec-cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcc---ccCCCeEEEEE
Q 004969          526 YDIRHMPPSIRGMHYGAGTVTFD-EFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD---MHKEHINVVKF  601 (721)
Q Consensus       526 WDi~~~~~~~~~~~~~~~~~~~~-~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~---~h~~~V~sI~f  601 (721)
                      ||..+++.          ...+. +...+.+++|+|++..+++++.++.|.+||+.+++.+..+..   ++...+..++|
T Consensus       169 ~d~~~~~~----------~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (353)
T 3vgz_A          169 VDGGNIKL----------KTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISL  238 (353)
T ss_dssp             EETTTTEE----------EEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEE
T ss_pred             EcCCCCce----------EEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEE
Confidence            99987543          12222 233468889999999999999999999999999998887763   24556888999


Q ss_pred             cCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEe-CCCcEEEEEcCCC-ccccc--ccC
Q 004969          602 SNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKG-SGTSMFVQSLRGD-PFRDF--NMS  677 (721)
Q Consensus       602 sPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs-~Dg~I~VWDl~g~-~l~~~--~~~  677 (721)
                      +|++..++++...++.|.+||..+++.........   ...++|+|+|+++++++ .++.|.+||.... ....+  ...
T Consensus       239 s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~  315 (353)
T 3vgz_A          239 DTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE---SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTH  315 (353)
T ss_dssp             ETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS---CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSE
T ss_pred             CCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC---CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCC
Confidence            99995455555556999999999886644444322   24689999999776665 6899999999733 33222  346


Q ss_pred             eEEEEECCCC
Q 004969          678 ILAAYTRPSS  687 (721)
Q Consensus       678 V~~v~fsP~~  687 (721)
                      +..++|+|++
T Consensus       316 ~~~~~~s~dg  325 (353)
T 3vgz_A          316 PNSLALSADG  325 (353)
T ss_dssp             EEEEEECTTS
T ss_pred             CCeEEEcCCC
Confidence            7889999999

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.72  E-value=2e-16  Score=186.17  Aligned_cols=225  Identities=14%  Similarity=0.119  Sum_probs=165.8

Q ss_pred             CeEEEEEeCCCCCEEEEEEC-CC-----eEEEEECCCCeEEEEeecCCCC----------------------CCeEEEEE
Q 004969          455 RPRQFEYHPSISCLMVFGTL-DG-----EIVVVNHENENIVSYIPSFGAM----------------------NSVLGLCW  506 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~-DG-----~I~IWdl~tg~~i~~l~~~~H~----------------------~~V~sl~f  506 (721)
                      .|.+++|+| ||++|++++. ||     +|++||+.+++....+...++.                      ..|.+++|
T Consensus        38 ~~~~~~~Sp-dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  116 (741)
T 2ecf_A           38 TLMKPKVAP-DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW  116 (741)
T ss_dssp             CCEEEEECT-TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred             CCCCceEec-CCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence            488999999 9999999998 88     9999999999887777643332                      33789999


Q ss_pred             eeCCCCEEEEEeCCCeEEEEEcCCC---CCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 004969          507 LKKYPSKLIAGSDNGSLKLYDIRHM---PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR  583 (721)
Q Consensus       507 sp~d~~~LaSgs~DGtVrIWDi~~~---~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~  583 (721)
                      + +++++|++++. +.|.+||+.++   ..  ..+        ..+...+..++|+|+|..++.++ ++.|++||+.+++
T Consensus       117 S-pDg~~l~~~~~-~~i~~~d~~~~~~~~~--~~l--------~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~  183 (741)
T 2ecf_A          117 S-PDAQRLLFPLG-GELYLYDLKQEGKAAV--RQL--------THGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGR  183 (741)
T ss_dssp             C-TTSSEEEEEET-TEEEEEESSSCSTTSC--CBC--------CCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTE
T ss_pred             C-CCCCEEEEEeC-CcEEEEECCCCCcceE--EEc--------ccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCC
Confidence            8 78999998887 89999999886   32  111        12335689999999999998887 4689999999887


Q ss_pred             EEEEEccccCCC----------------eEEEEEcCCCCcEEEEEECCC-------------------------------
Q 004969          584 RLQVFADMHKEH----------------INVVKFSNHSPSIFATSSFDQ-------------------------------  616 (721)
Q Consensus       584 ~v~~l~~~h~~~----------------V~sI~fsPdg~~lLaSgs~Dg-------------------------------  616 (721)
                      ....... +...                +..++|+||| +.|++++.|+                               
T Consensus       184 ~~~~~~~-~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~  261 (741)
T 2ecf_A          184 QMQLTAD-GSTTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV  261 (741)
T ss_dssp             EEECCCC-CCSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred             EEEeccC-CccceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence            7655443 3322                4779999999 6777777665                               


Q ss_pred             --cEEEEECCC-CCceeEEEecCCCCeE-EEEEecCCCEEEEEeC-----CCcEEEEEcCCCccc----cccc----CeE
Q 004969          617 --DVKLWDLRQ-KPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGS-----GTSMFVQSLRGDPFR----DFNM----SIL  679 (721)
Q Consensus       617 --tIrIWDlrs-~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~-----Dg~I~VWDl~g~~l~----~~~~----~V~  679 (721)
                        .|++||+.+ ++...+.....+...+ .++| |||++|++++.     +..|++||+.+....    .+..    .+.
T Consensus       262 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~  340 (741)
T 2ecf_A          262 QVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHN  340 (741)
T ss_dssp             EEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCS
T ss_pred             eeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCC
Confidence              789999988 7654332221344455 8999 99999997754     467999999843321    1111    345


Q ss_pred             EEEECCCCCcccccccEEEEecCC
Q 004969          680 AAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       680 ~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      .++|+|++       .++++++..
T Consensus       341 ~~~~spdg-------~~~~~~~~~  357 (741)
T 2ecf_A          341 SLRFLDDG-------SILWSSERT  357 (741)
T ss_dssp             CCEECTTS-------CEEEEECTT
T ss_pred             ceEECCCC-------eEEEEecCC
Confidence            78999999       666666544

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.71  E-value=1.5e-15  Score=159.95  Aligned_cols=215  Identities=9%  Similarity=0.029  Sum_probs=152.4

Q ss_pred             eEEEEEeCCCCCEEEEEEC-CCeEEEEECCCCeE-EEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCC---eEEEEEcCC
Q 004969          456 PRQFEYHPSISCLMVFGTL-DGEIVVVNHENENI-VSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG---SLKLYDIRH  530 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~-DG~I~IWdl~tg~~-i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DG---tVrIWDi~~  530 (721)
                      + +++|+| +++++++++. ++.|.+||..+++. ...+.  .+..+..+++|+ +++++++++..++   .|.+||+.+
T Consensus        43 ~-~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~s-~dg~~l~~~~~~~~~~~i~v~d~~~  117 (331)
T 3u4y_A           43 V-DTAITS-DCSNVVVTSDFCQTLVQIETQLEPPKVVAIQ--EGQSSMADVDIT-PDDQFAVTVTGLNHPFNMQSYSFLK  117 (331)
T ss_dssp             E-EEEECS-SSCEEEEEESTTCEEEEEECSSSSCEEEEEE--ECSSCCCCEEEC-TTSSEEEECCCSSSSCEEEEEETTT
T ss_pred             c-eEEEcC-CCCEEEEEeCCCCeEEEEECCCCceeEEecc--cCCCCccceEEC-CCCCEEEEecCCCCcccEEEEECCC
Confidence            5 899999 8886665555 89999999999887 66655  444555559998 7888888555553   999999987


Q ss_pred             CCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-CCCc-EEEEECCCCcEE-----EEEccccCCCeEEEEEcC
Q 004969          531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKN-IALYDINSGRRL-----QVFADMHKEHINVVKFSN  603 (721)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~-IrlWDl~s~~~v-----~~l~~~h~~~V~sI~fsP  603 (721)
                      ++.          ...+.......+++|+|++..+++++ .++. |.+|++.....+     ..+.  ....+..++|+|
T Consensus       118 ~~~----------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~sp  185 (331)
T 3u4y_A          118 NKF----------ISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFIS--GGTRPFNITFTP  185 (331)
T ss_dssp             TEE----------EEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEEC--SSSSEEEEEECT
T ss_pred             CCe----------EEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCcccc--CCCCccceEECC
Confidence            543          12233344568999999998766665 5588 999999864332     2222  456689999999


Q ss_pred             CCCcEEEEEECCCcEEEEECCCCCc-eeEEEecCCCCeEEEEEecCCCEEEEEe-CCCcEEEEEcCCCccc---cc----
Q 004969          604 HSPSIFATSSFDQDVKLWDLRQKPI-QPCYTASSSKGNVMVCFSPDDHYLLGKG-SGTSMFVQSLRGDPFR---DF----  674 (721)
Q Consensus       604 dg~~lLaSgs~DgtIrIWDlrs~~~-~~~~~~~~~~~~vsl~fSpdg~~Lasgs-~Dg~I~VWDl~g~~l~---~~----  674 (721)
                      +|..+++++..++.|++||+.+++. ..+..+..+..+..++|+|+|+++++++ .++.|.+||+....+.   .+    
T Consensus       186 dg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~  265 (331)
T 3u4y_A          186 DGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGL  265 (331)
T ss_dssp             TSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCC
T ss_pred             CCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccccccc
Confidence            9944566666789999999998765 1133444444555799999999887665 4778999999843331   00    


Q ss_pred             ---c---cCeEEEEECCCC
Q 004969          675 ---N---MSILAAYTRPSS  687 (721)
Q Consensus       675 ---~---~~V~~v~fsP~~  687 (721)
                         .   .....++|+|++
T Consensus       266 ~~~~~~~~~~~~~~~spdg  284 (331)
T 3u4y_A          266 LIDPRPLFGANQMALNKTE  284 (331)
T ss_dssp             CCCCGGGTTCCCEEECTTS
T ss_pred             ccCCCCcccccceEECCCC
Confidence               1   122457999999

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.71  E-value=9.7e-16  Score=175.66  Aligned_cols=193  Identities=13%  Similarity=0.119  Sum_probs=155.2

Q ss_pred             EeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEc--CCCCCccccc
Q 004969          461 YHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDI--RHMPPSIRGM  538 (721)
Q Consensus       461 fsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi--~~~~~~~~~~  538 (721)
                      |+| ++.++++++.|++|.+||..+++++.++.. ++.  +.+++|+ +++++|++++.|++|++||+  .+++.     
T Consensus       145 ~~p-~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~-g~~--~~~v~~s-pdg~~l~v~~~d~~V~v~D~~~~t~~~-----  214 (543)
T 1nir_A          145 LDL-PNLFSVTLRDAGQIALVDGDSKKIVKVIDT-GYA--VHISRMS-ASGRYLLVIGRDARIDMIDLWAKEPTK-----  214 (543)
T ss_dssp             CCG-GGEEEEEEGGGTEEEEEETTTCCEEEEEEC-STT--EEEEEEC-TTSCEEEEEETTSEEEEEETTSSSCEE-----
T ss_pred             cCC-CCEEEEEEcCCCeEEEEECCCceEEEEEec-Ccc--cceEEEC-CCCCEEEEECCCCeEEEEECcCCCCcE-----
Confidence            678 788999999999999999999999998873 332  8899998 79999999999999999999  55332     


Q ss_pred             ccCcceeEeccCCCeEEEEEec----CCCEEEEEeC-CCcEEEEECCCCcEEEEEccc---------cC-CCeEEEEEcC
Q 004969          539 HYGAGTVTFDEFDQLTSVHVNS----MDELFLASGY-SKNIALYDINSGRRLQVFADM---------HK-EHINVVKFSN  603 (721)
Q Consensus       539 ~~~~~~~~~~~~~~V~sv~~sp----~~~~lls~g~-Dg~IrlWDl~s~~~v~~l~~~---------h~-~~V~sI~fsP  603 (721)
                           ...+.....+..++|+|    ++.++++++. +++|.+||..+++++..+...         |. ..+.++.++|
T Consensus       215 -----~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~  289 (543)
T 1nir_A          215 -----VAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASH  289 (543)
T ss_dssp             -----EEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECS
T ss_pred             -----EEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECC
Confidence                 22333445578999999    9999999885 899999999999999887631         22 3789999999


Q ss_pred             CCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEe-CCCcEEEEEcCC
Q 004969          604 HSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKG-SGTSMFVQSLRG  668 (721)
Q Consensus       604 dg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs-~Dg~I~VWDl~g  668 (721)
                      +++.++++...++.|.+||..+.+...+..+........++|+|+|+++++++ .+++|.+||+..
T Consensus       290 ~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t  355 (543)
T 1nir_A          290 EHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD  355 (543)
T ss_dssp             SSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred             CCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCC
Confidence            98788888899999999999886544333444333334789999999887665 588999999974

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.71  E-value=2.1e-15  Score=159.53  Aligned_cols=226  Identities=11%  Similarity=0.053  Sum_probs=163.1

Q ss_pred             CeEEEEEeCCCCCEEEEEEC-------CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCC-EEEEEeCCCeEEEE
Q 004969          455 RPRQFEYHPSISCLMVFGTL-------DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPS-KLIAGSDNGSLKLY  526 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~-------DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~-~LaSgs~DGtVrIW  526 (721)
                      .+..++|+| +++++++++.       ++.|.+||..+++.+..+..   ...+.+++|+ ++++ .++++..++.|.+|
T Consensus        42 ~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s-~dg~~l~v~~~~~~~v~~~  116 (353)
T 3vgz_A           42 GAYEMAYSQ-QENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN---DLKPFGATIN-NTTQTLWFGNTVNSAVTAI  116 (353)
T ss_dssp             SEEEEEEET-TTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE---SSCCCSEEEE-TTTTEEEEEETTTTEEEEE
T ss_pred             CccceEECC-CCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec---CCCcceEEEC-CCCCEEEEEecCCCEEEEE
Confidence            478899999 8888887774       56899999999998888764   2347788998 5666 55556668999999


Q ss_pred             EcCCCCCcccccccCcce-eEeccCCCeEEEEEecCCCEEEEEe--CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcC
Q 004969          527 DIRHMPPSIRGMHYGAGT-VTFDEFDQLTSVHVNSMDELFLASG--YSKNIALYDINSGRRLQVFADMHKEHINVVKFSN  603 (721)
Q Consensus       527 Di~~~~~~~~~~~~~~~~-~~~~~~~~V~sv~~sp~~~~lls~g--~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsP  603 (721)
                      |..+++.... ...+... ........+.+++|+|+++.+++++  .++.|.+||..+++.+..+.. +...+..++|+|
T Consensus       117 d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~s~  194 (353)
T 3vgz_A          117 DAKTGEVKGR-LVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQN-TGKMSTGLALDS  194 (353)
T ss_dssp             ETTTCCEEEE-EESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECC-CCTTCCCCEEET
T ss_pred             eCCCCeeEEE-EecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecC-CCCccceEEECC
Confidence            9988664211 1110000 0000011268899999999888876  478899999999999988874 556688999999


Q ss_pred             CCCcEEEEEECCCcEEEEECCCCCceeEEEecC--CCC-eEEEEEecCCCEEEEEeCC-CcEEEEEcC-CCcccccc-cC
Q 004969          604 HSPSIFATSSFDQDVKLWDLRQKPIQPCYTASS--SKG-NVMVCFSPDDHYLLGKGSG-TSMFVQSLR-GDPFRDFN-MS  677 (721)
Q Consensus       604 dg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~--~~~-~vsl~fSpdg~~Lasgs~D-g~I~VWDl~-g~~l~~~~-~~  677 (721)
                      +| ..+++++.++.|.+||+.+++.........  +.. ...++|+|+|+++++++.+ +.|++||+. +....... ..
T Consensus       195 dg-~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~  273 (353)
T 3vgz_A          195 EG-KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE  273 (353)
T ss_dssp             TT-TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS
T ss_pred             CC-CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC
Confidence            99 688888889999999999986544443311  222 3379999999988777654 899999997 33332221 12


Q ss_pred             eEEEEECCCCC
Q 004969          678 ILAAYTRPSSK  688 (721)
Q Consensus       678 V~~v~fsP~~~  688 (721)
                      ...+.|+|+++
T Consensus       274 ~~~~~~s~dg~  284 (353)
T 3vgz_A          274 SLAVLFNPARN  284 (353)
T ss_dssp             CCCEEEETTTT
T ss_pred             CceEEECCCCC
Confidence            35689999983

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.70  E-value=2.4e-15  Score=160.11  Aligned_cols=239  Identities=10%  Similarity=0.132  Sum_probs=153.6

Q ss_pred             CeEEEEEeCCCCCEEEEEEC--CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEe-CCCeEEEEEcCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTL--DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS-DNGSLKLYDIRHM  531 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~--DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs-~DGtVrIWDi~~~  531 (721)
                      .+..++|+| ++++++++..  ++.|++|++.++.....-....+...+..++|+ +++++|++++ .++.|.+|++...
T Consensus        41 ~p~~~a~sp-dg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~s-pdg~~l~~~~~~~~~v~v~~~~~~  118 (347)
T 3hfq_A           41 NPTYLALSA-KDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVD-EARQLVYSANYHKGTAEVMKIAAD  118 (347)
T ss_dssp             CCCCEEECT-TCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEE-TTTTEEEEEETTTTEEEEEEECTT
T ss_pred             CcceEEEcc-CCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEEC-CCCCEEEEEeCCCCEEEEEEeCCC
Confidence            367899999 8884444432  689999999877643222212456778899998 7888888877 7899999999642


Q ss_pred             CC-cc-ccccc-CcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC-CCcEEE--EEccccCCCeEEEEEcCCC
Q 004969          532 PP-SI-RGMHY-GAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDIN-SGRRLQ--VFADMHKEHINVVKFSNHS  605 (721)
Q Consensus       532 ~~-~~-~~~~~-~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~-s~~~v~--~l~~~h~~~V~sI~fsPdg  605 (721)
                      .. .. ..... ............+.+++|+|++..+++...++.|++||+. +++...  .+.......+..++|+|+|
T Consensus       119 g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg  198 (347)
T 3hfq_A          119 GALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDG  198 (347)
T ss_dssp             SCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTS
T ss_pred             CCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCC
Confidence            21 10 00000 0000000112347889999999944444458899999998 554332  2222133467889999999


Q ss_pred             CcEEEEEECCCcEEEEECCC--CCceeEEEecCC-------CCeEEEEEecCCCEEE-EEeCCCcEEEEEcC--CC--cc
Q 004969          606 PSIFATSSFDQDVKLWDLRQ--KPIQPCYTASSS-------KGNVMVCFSPDDHYLL-GKGSGTSMFVQSLR--GD--PF  671 (721)
Q Consensus       606 ~~lLaSgs~DgtIrIWDlrs--~~~~~~~~~~~~-------~~~vsl~fSpdg~~La-sgs~Dg~I~VWDl~--g~--~l  671 (721)
                      ..+++++..++.|++|++..  ++..........       ..+..++|+|||++|+ +...++.|.+|++.  +.  .+
T Consensus       199 ~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~  278 (347)
T 3hfq_A          199 QYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLI  278 (347)
T ss_dssp             SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEE
T ss_pred             CEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEe
Confidence            43556667789999999874  433223222211       2244799999999885 45568999999986  21  11


Q ss_pred             cc---cccCeEEEEECCCCCcccccccEEEEecC
Q 004969          672 RD---FNMSILAAYTRPSSKSEIVKVNLLASTDH  702 (721)
Q Consensus       672 ~~---~~~~V~~v~fsP~~~~~~v~v~lLASgs~  702 (721)
                      ..   +...+..++|+|++       ..|++++.
T Consensus       279 ~~~~~~~~~~~~~~~spdg-------~~l~v~~~  305 (347)
T 3hfq_A          279 QQISTEGDFPRDFDLDPTE-------AFVVVVNQ  305 (347)
T ss_dssp             EEEECSSSCCCEEEECTTS-------SEEEEEET
T ss_pred             EEEecCCCCcCeEEECCCC-------CEEEEEEc
Confidence            11   13357889999999       65555544

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.70  E-value=7.8e-15  Score=154.36  Aligned_cols=213  Identities=12%  Similarity=0.128  Sum_probs=153.4

Q ss_pred             EeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeC-CCeEEEEEcCCCCCcccccc
Q 004969          461 YHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD-NGSLKLYDIRHMPPSIRGMH  539 (721)
Q Consensus       461 fsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~-DGtVrIWDi~~~~~~~~~~~  539 (721)
                      |.+..+..+++++.++.|.+||..+++....+.  .+...+ +++|+ ++++++++++. ++.|.+||..+++..     
T Consensus         5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~-~~~~s-~dg~~l~~~~~~~~~i~~~d~~~~~~~-----   75 (331)
T 3u4y_A            5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQIT--LGYDFV-DTAIT-SDCSNVVVTSDFCQTLVQIETQLEPPK-----   75 (331)
T ss_dssp             --CCCCEEEEEEGGGTEEEEEETTTCCEEEEEE--CCCCEE-EEEEC-SSSCEEEEEESTTCEEEEEECSSSSCE-----
T ss_pred             EcCCCCEEEEEecCCCeEEEEeCcccceeeeEE--ccCCcc-eEEEc-CCCCEEEEEeCCCCeEEEEECCCCcee-----
Confidence            455345568888899999999999999988776  334556 99998 67776665554 899999999886531     


Q ss_pred             cCcceeEec-cCCCeEEEEEecCCCEEEEEeCC-C--cEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECC
Q 004969          540 YGAGTVTFD-EFDQLTSVHVNSMDELFLASGYS-K--NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD  615 (721)
Q Consensus       540 ~~~~~~~~~-~~~~V~sv~~sp~~~~lls~g~D-g--~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~D  615 (721)
                          ..... +..+..+++|+|++..++++..+ +  .|++||+.+++.+..+.  +...+.+++|+|+|..+++++..+
T Consensus        76 ----~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~  149 (331)
T 3u4y_A           76 ----VVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP--IPYDAVGIAISPNGNGLILIDRSS  149 (331)
T ss_dssp             ----EEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE--CCTTEEEEEECTTSSCEEEEEETT
T ss_pred             ----EEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE--CCCCccceEECCCCCEEEEEecCC
Confidence                11122 22333449999999999955444 3  89999999999988877  455679999999995567777777


Q ss_pred             Cc-EEEEECCCCCcee---EEEecCCCCeEEEEEecCCCEEEEEe-CCCcEEEEEcC-CCc---cccc--ccCeEEEEEC
Q 004969          616 QD-VKLWDLRQKPIQP---CYTASSSKGNVMVCFSPDDHYLLGKG-SGTSMFVQSLR-GDP---FRDF--NMSILAAYTR  684 (721)
Q Consensus       616 gt-IrIWDlrs~~~~~---~~~~~~~~~~vsl~fSpdg~~Lasgs-~Dg~I~VWDl~-g~~---l~~~--~~~V~~v~fs  684 (721)
                      +. |++|++.......   .........+..++|+|+|+++++++ .++.|++||+. +..   +..+  ...+..++|+
T Consensus       150 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~s  229 (331)
T 3u4y_A          150 ANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVS  229 (331)
T ss_dssp             TTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEEC
T ss_pred             CceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEEC
Confidence            88 9999998643211   12233344556899999999776555 68899999997 333   3222  3467789999


Q ss_pred             CCCC
Q 004969          685 PSSK  688 (721)
Q Consensus       685 P~~~  688 (721)
                      |+++
T Consensus       230 pdg~  233 (331)
T 3u4y_A          230 RDGS  233 (331)
T ss_dssp             TTSS
T ss_pred             CCCC
Confidence            9995

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.69  E-value=2.6e-15  Score=172.13  Aligned_cols=231  Identities=11%  Similarity=0.058  Sum_probs=165.7

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEEC--CCCeEEEEeecCCCCCCeEEEEEeeC----CCCEEEEEe-CCCeEEEEEc
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNH--ENENIVSYIPSFGAMNSVLGLCWLKK----YPSKLIAGS-DNGSLKLYDI  528 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl--~tg~~i~~l~~~~H~~~V~sl~fsp~----d~~~LaSgs-~DGtVrIWDi  528 (721)
                      +.+++|+| +++++++++.|++|++||+  .+++.+..+.   +...+.+++|+ +    +++++++++ .+++|.+||.
T Consensus       181 ~~~v~~sp-dg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~---~g~~p~~va~s-p~~~~dg~~l~v~~~~~~~v~v~D~  255 (543)
T 1nir_A          181 VHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPTKVAEIK---IGIEARSVESS-KFKGYEDRYTIAGAYWPPQFAIMDG  255 (543)
T ss_dssp             EEEEEECT-TSCEEEEEETTSEEEEEETTSSSCEEEEEEE---CCSEEEEEEEC-CSTTCTTTEEEEEEEESSEEEEEET
T ss_pred             cceEEECC-CCCEEEEECCCCeEEEEECcCCCCcEEEEEe---cCCCcceEEeC-CCcCCCCCEEEEEEccCCeEEEEec
Confidence            78999999 9999999999999999999  8898888886   23568999998 6    888888887 5899999999


Q ss_pred             CCCCCcccccccCcc---eeEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEE--EEccccCCCeEEEEEc
Q 004969          529 RHMPPSIRGMHYGAG---TVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQ--VFADMHKEHINVVKFS  602 (721)
Q Consensus       529 ~~~~~~~~~~~~~~~---~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~v~--~l~~~h~~~V~sI~fs  602 (721)
                      .+.+.. ..+.....   ...+.....+.++.++++++.++++. .++.|.+||..+++.+.  .+.  +...+..+.|+
T Consensus       256 ~t~~~~-~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~--~~~~~~~~~~s  332 (543)
T 1nir_A          256 ETLEPK-QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG--AAPFLHDGGWD  332 (543)
T ss_dssp             TTCCEE-EEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE--CCSSCCCEEEC
T ss_pred             cccccc-eeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec--cCcCccCceEC
Confidence            886542 11111100   00111223688999999888776665 58999999999866544  443  66778899999


Q ss_pred             CCCCcEEEEEECCCcEEEEECCCCCceeEEEec--CCCCeEEEEEecC-CCEEEEEe-CCCcEEEEEcCC--------Cc
Q 004969          603 NHSPSIFATSSFDQDVKLWDLRQKPIQPCYTAS--SSKGNVMVCFSPD-DHYLLGKG-SGTSMFVQSLRG--------DP  670 (721)
Q Consensus       603 Pdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~--~~~~~vsl~fSpd-g~~Lasgs-~Dg~I~VWDl~g--------~~  670 (721)
                      |+|..+++++..+++|.+||+.++++.......  .|.+.....++|+ |..+++++ .|++|.+||+..        +.
T Consensus       333 pdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~  412 (543)
T 1nir_A          333 SSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKK  412 (543)
T ss_dssp             TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSE
T ss_pred             CCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeE
Confidence            999434555667899999999998665444321  1322221125787 66666665 589999999873        11


Q ss_pred             ---ccccccCeEEEEECCCCCcccccccEEEEec
Q 004969          671 ---FRDFNMSILAAYTRPSSKSEIVKVNLLASTD  701 (721)
Q Consensus       671 ---l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs  701 (721)
                         +..+...+..+.+||++       +.|.+++
T Consensus       413 v~~l~~~g~~~~~v~~~pdg-------~~l~v~~  439 (543)
T 1nir_A          413 VAELQGQGGGSLFIKTHPKS-------SHLYVDT  439 (543)
T ss_dssp             EEEEECSCSCCCCEECCTTC-------CEEEECC
T ss_pred             EEEEEcCCCCceEEEcCCCC-------CcEEEec
Confidence               22334567789999999       6666665

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.69  E-value=4.4e-16  Score=173.44  Aligned_cols=160  Identities=13%  Similarity=0.061  Sum_probs=124.1

Q ss_pred             CeEEEEEeCCCCCEEE----EEECCCeEEEEECCCC--------eEEEEe-ecCCCCCCeEEEEEeeCCCCEEEEEeCCC
Q 004969          455 RPRQFEYHPSISCLMV----FGTLDGEIVVVNHENE--------NIVSYI-PSFGAMNSVLGLCWLKKYPSKLIAGSDNG  521 (721)
Q Consensus       455 ~V~~lafsP~dg~~La----sGs~DG~I~IWdl~tg--------~~i~~l-~~~~H~~~V~sl~fsp~d~~~LaSgs~DG  521 (721)
                      .|++++|+| ++++|+    +|+.||+|+|||+.++        +.+..+ ...+|...|.+++|+|.++.+|++++.||
T Consensus        94 ~v~~l~~sp-dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg  172 (434)
T 2oit_A           94 PIHHLALSC-DNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADG  172 (434)
T ss_dssp             CEEEEEECT-TSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTS
T ss_pred             cccEEEEcC-CCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCC
Confidence            599999999 899999    7889999999998654        221111 22378999999999966689999999999


Q ss_pred             eEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcc------ccCCC
Q 004969          522 SLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD------MHKEH  595 (721)
Q Consensus       522 tVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~------~h~~~  595 (721)
                      +|++||++++...         .....|...|.+++|+|++..+++|+.||+|++||++ ++....+..      .|...
T Consensus       173 ~v~iwD~~~~~~~---------~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~  242 (434)
T 2oit_A          173 SIAVLQVTETVKV---------CATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVR  242 (434)
T ss_dssp             CEEEEEESSSEEE---------EEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEE
T ss_pred             eEEEEEcCCCcce---------eeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCcee
Confidence            9999999885321         1123356689999999999999999999999999999 666666543      12338


Q ss_pred             eEEEEEcCCCCcEEE-EEECCCc------EEEEECCCC
Q 004969          596 INVVKFSNHSPSIFA-TSSFDQD------VKLWDLRQK  626 (721)
Q Consensus       596 V~sI~fsPdg~~lLa-Sgs~Dgt------IrIWDlrs~  626 (721)
                      |.+++|++++ .+++ .++.||.      +++||++..
T Consensus       243 v~~v~w~~~~-~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          243 VLDVLWIGTY-VFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEEEEEEETT-EEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             EEEEEEecCc-eEEEEEccCCCccCCCCceEEEEeccC
Confidence            9999999987 4443 3445543      899999865

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.69  E-value=1.8e-15  Score=154.45  Aligned_cols=208  Identities=13%  Similarity=0.068  Sum_probs=146.5

Q ss_pred             EEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCC-CCCcccccccCcceeEecc
Q 004969          471 FGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH-MPPSIRGMHYGAGTVTFDE  549 (721)
Q Consensus       471 sGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~-~~~~~~~~~~~~~~~~~~~  549 (721)
                      .++.|++|++||+.+++.....   .|...|.+++|+ +++++|++++ ++.|.+||+.+ ++.... ...       .+
T Consensus        17 ~~~~~~~i~~~d~~~~~~~~~~---~~~~~v~~~~~s-pdg~~l~~~~-~~~i~~~d~~~~~~~~~~-~~~-------~~   83 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMRVVW---QTPELFEAPNWS-PDGKYLLLNS-EGLLYRLSLAGDPSPEKV-DTG-------FA   83 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEEEEE---EESSCCEEEEEC-TTSSEEEEEE-TTEEEEEESSSCCSCEEC-CCT-------TC
T ss_pred             CCCcceeEEEEeCCCCceeeec---cCCcceEeeEEC-CCCCEEEEEc-CCeEEEEeCCCCCCceEe-ccc-------cc
Confidence            3567899999999998876544   567899999998 7888888876 78999999988 654211 110       11


Q ss_pred             CCCeEEEEEecCCCEEEEEeC--CCcEEE--EECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCC
Q 004969          550 FDQLTSVHVNSMDELFLASGY--SKNIAL--YDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQ  625 (721)
Q Consensus       550 ~~~V~sv~~sp~~~~lls~g~--Dg~Irl--WDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs  625 (721)
                      ...+.+++|+|++..+++++.  ++...+  ||..+++ ...+.  +...+..++|+|++..++++++.|+.+++|++..
T Consensus        84 ~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~  160 (297)
T 2ojh_A           84 TICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMT--KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDI  160 (297)
T ss_dssp             CCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECC--SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred             cccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEee--cCCCccceEECCCCCEEEEEECCCCceEEEEEEC
Confidence            245788999999999999983  344444  5555554 34444  3345899999999944455888999999999643


Q ss_pred             CCceeEEEecCCCCeE-EEEEecCCCEEEEEe-CCCcEEEEEcC--CCc---ccccccCeEEEEECCCCCcccccccEEE
Q 004969          626 KPIQPCYTASSSKGNV-MVCFSPDDHYLLGKG-SGTSMFVQSLR--GDP---FRDFNMSILAAYTRPSSKSEIVKVNLLA  698 (721)
Q Consensus       626 ~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs-~Dg~I~VWDl~--g~~---l~~~~~~V~~v~fsP~~~~~~v~v~lLA  698 (721)
                      .... ...+..+...+ .++|+|+|++++.++ .++.+.+|++.  +..   +..+...+..+.|+|++       ..|+
T Consensus       161 ~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-------~~l~  232 (297)
T 2ojh_A          161 DSGV-ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSG-------DKVV  232 (297)
T ss_dssp             TTCC-EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTS-------SEEE
T ss_pred             CCCc-ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCC-------CEEE
Confidence            2111 23344444444 899999999888766 58889999875  333   33345578889999999       5555


Q ss_pred             EecC
Q 004969          699 STDH  702 (721)
Q Consensus       699 Sgs~  702 (721)
                      +++.
T Consensus       233 ~~~~  236 (297)
T 2ojh_A          233 FVSY  236 (297)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            5443

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.67  E-value=6.8e-15  Score=154.45  Aligned_cols=207  Identities=12%  Similarity=0.126  Sum_probs=145.0

Q ss_pred             CEEEEEECCCeEEEEECC-CCe--EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC-CeEEEEEcC--CCCCccccccc
Q 004969          467 CLMVFGTLDGEIVVVNHE-NEN--IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN-GSLKLYDIR--HMPPSIRGMHY  540 (721)
Q Consensus       467 ~~LasGs~DG~I~IWdl~-tg~--~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D-GtVrIWDi~--~~~~~~~~~~~  540 (721)
                      .++++++.|+.|++|++. ++.  .+..+   .|...+.+++|+ +++++|++++.+ +.|.+|++.  ++...      
T Consensus         6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s-pdg~~l~~~~~~~~~v~~~~~~~~~~~~~------   75 (343)
T 1ri6_A            6 TVYIASPESQQIHVWNLNHEGALTLTQVV---DVPGQVQPMVVS-PDKRYLYVGVRPEFRVLAYRIAPDDGALT------   75 (343)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEE---ECSSCCCCEEEC-TTSSEEEEEETTTTEEEEEEECTTTCCEE------
T ss_pred             EEEEeCCCCCeEEEEEECCCCcEEEeeeE---ecCCCCceEEEC-CCCCEEEEeecCCCeEEEEEecCCCCcee------
Confidence            345555789999999995 343  23333   466788999998 688888888876 999999998  33321      


Q ss_pred             CcceeEeccCCCeEEEEEecCCCEEEEEeC-CCcEEEEECC---CCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE-CC
Q 004969          541 GAGTVTFDEFDQLTSVHVNSMDELFLASGY-SKNIALYDIN---SGRRLQVFADMHKEHINVVKFSNHSPSIFATSS-FD  615 (721)
Q Consensus       541 ~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-Dg~IrlWDl~---s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs-~D  615 (721)
                        ....+.....+..++|+|++..+++++. ++.|.+||+.   +++.+..+.  ....+.+++|+|+| ..+++++ .+
T Consensus        76 --~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~s~dg-~~l~~~~~~~  150 (343)
T 1ri6_A           76 --FAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE--GLDGCHSANISPDN-RTLWVPALKQ  150 (343)
T ss_dssp             --EEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC--CCTTBCCCEECTTS-SEEEEEEGGG
T ss_pred             --eccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc--CCCCceEEEECCCC-CEEEEecCCC
Confidence              1112222346789999999998888775 7889999994   444555555  34568899999999 5666665 89


Q ss_pred             CcEEEEECCC-CCceeEE----EecCCCCeEEEEEecCCCEEEEEe-CCCcEEEEEcCC--Ccc---ccc---------c
Q 004969          616 QDVKLWDLRQ-KPIQPCY----TASSSKGNVMVCFSPDDHYLLGKG-SGTSMFVQSLRG--DPF---RDF---------N  675 (721)
Q Consensus       616 gtIrIWDlrs-~~~~~~~----~~~~~~~~vsl~fSpdg~~Lasgs-~Dg~I~VWDl~g--~~l---~~~---------~  675 (721)
                      +.|++||+.+ ++.....    .......+..++|+|+|+++++++ .++.|.+|++..  ..+   ...         .
T Consensus       151 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~  230 (343)
T 1ri6_A          151 DRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDT  230 (343)
T ss_dssp             TEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSC
T ss_pred             CEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcccccc
Confidence            9999999987 5443322    222333455899999999876655 789999999952  111   111         1


Q ss_pred             cCeEEEEECCCCC
Q 004969          676 MSILAAYTRPSSK  688 (721)
Q Consensus       676 ~~V~~v~fsP~~~  688 (721)
                      ..+..++|+|+++
T Consensus       231 ~~~~~i~~s~dg~  243 (343)
T 1ri6_A          231 RWAADIHITPDGR  243 (343)
T ss_dssp             CCEEEEEECTTSS
T ss_pred             CCccceEECCCCC
Confidence            2456799999994

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.66  E-value=4.8e-14  Score=150.96  Aligned_cols=228  Identities=11%  Similarity=0.104  Sum_probs=150.7

Q ss_pred             CeEEEEEeCCCCCEEEEEECC----CeEEEEECCC--CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEe-CCCeEEEEE
Q 004969          455 RPRQFEYHPSISCLMVFGTLD----GEIVVVNHEN--ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS-DNGSLKLYD  527 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~D----G~I~IWdl~t--g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs-~DGtVrIWD  527 (721)
                      .+..++|+| ++++|++++.+    |.|.+|++..  |+.........+......+++   +++++++++ .++.|.+|+
T Consensus        51 ~p~~l~~sp-dg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~---dg~~l~~~~~~~~~v~~~~  126 (361)
T 3scy_A           51 NPSYLIPSA-DGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT---NGKNIVTANYSGGSITVFP  126 (361)
T ss_dssp             CCCSEEECT-TSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE---CSSEEEEEETTTTEEEEEE
T ss_pred             CCceEEECC-CCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE---CCCEEEEEECCCCEEEEEE
Confidence            477899999 89999998886    8999998865  544322222234556777776   567666665 689999999


Q ss_pred             cCCCCCccccc--ccCcc--ee-EeccCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCcE------E------EEEc
Q 004969          528 IRHMPPSIRGM--HYGAG--TV-TFDEFDQLTSVHVNSMDELFLASGY-SKNIALYDINSGRR------L------QVFA  589 (721)
Q Consensus       528 i~~~~~~~~~~--~~~~~--~~-~~~~~~~V~sv~~sp~~~~lls~g~-Dg~IrlWDl~s~~~------v------~~l~  589 (721)
                      +..........  .....  .. ...+...+.+++|+|++..+++++. ++.|++|++.....      +      ....
T Consensus       127 ~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~  206 (361)
T 3scy_A          127 IGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFK  206 (361)
T ss_dssp             BCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEE
T ss_pred             eCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccccee
Confidence            97543211100  00000  00 0011233688999999998877764 78999998875431      1      1222


Q ss_pred             cccCCCeEEEEEcCCCCcEEEEEE-CCCcEEEEECCCCCceeEEEecC---C-CCeEEEEEecCCCEEEEEeCC--CcEE
Q 004969          590 DMHKEHINVVKFSNHSPSIFATSS-FDQDVKLWDLRQKPIQPCYTASS---S-KGNVMVCFSPDDHYLLGKGSG--TSMF  662 (721)
Q Consensus       590 ~~h~~~V~sI~fsPdg~~lLaSgs-~DgtIrIWDlrs~~~~~~~~~~~---~-~~~vsl~fSpdg~~Lasgs~D--g~I~  662 (721)
                      ..+...+..++|+|+| +++++++ .++.|++||+.++..........   + .....++|+|||++|+++..+  +.|.
T Consensus       207 ~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~  285 (361)
T 3scy_A          207 VAPGSGPRHLIFNSDG-KFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA  285 (361)
T ss_dssp             CCTTCCEEEEEECTTS-SEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred             cCCCCCCeEEEEcCCC-CEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence            2255678899999999 5665555 68999999998775443333322   1 234489999999999777654  8999


Q ss_pred             EEEcC---CC--ccccc--ccCeEEEEECCCC
Q 004969          663 VQSLR---GD--PFRDF--NMSILAAYTRPSS  687 (721)
Q Consensus       663 VWDl~---g~--~l~~~--~~~V~~v~fsP~~  687 (721)
                      +|++.   +.  .+...  ...+..++|+|++
T Consensus       286 v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg  317 (361)
T 3scy_A          286 IFKVDETNGTLTKVGYQLTGIHPRNFIITPNG  317 (361)
T ss_dssp             EEEECTTTCCEEEEEEEECSSCCCEEEECTTS
T ss_pred             EEEEcCCCCcEEEeeEecCCCCCceEEECCCC
Confidence            99995   22  11111  2367789999999

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.66  E-value=3.6e-15  Score=174.70  Aligned_cols=228  Identities=11%  Similarity=-0.002  Sum_probs=156.5

Q ss_pred             CeEEEEEeCCCCCEEEEEECC---------CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEE
Q 004969          455 RPRQFEYHPSISCLMVFGTLD---------GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKL  525 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~D---------G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrI  525 (721)
                      .|.+++||| ||++|++++.+         +.|.+||+.+++........+|...+..++|+ ++++.|+.++. +.|++
T Consensus        62 ~v~~~~~Sp-Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~S-PdG~~la~~~~-~~i~~  138 (723)
T 1xfd_A           62 RAIRYEISP-DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWG-PKGQQLIFIFE-NNIYY  138 (723)
T ss_dssp             TCSEEEECT-TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBC-SSTTCEEEEET-TEEEE
T ss_pred             ccceEEECC-CCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEEC-CCCCEEEEEEC-CeEEE
Confidence            488999999 99999999874         78889999988763222223455568899998 78899998886 79999


Q ss_pred             EEcCCCCCcccccccCcceeEecc---------CCCeEEEEEecCCCEEEEEeCCC------------------------
Q 004969          526 YDIRHMPPSIRGMHYGAGTVTFDE---------FDQLTSVHVNSMDELFLASGYSK------------------------  572 (721)
Q Consensus       526 WDi~~~~~~~~~~~~~~~~~~~~~---------~~~V~sv~~sp~~~~lls~g~Dg------------------------  572 (721)
                      ||+.+++.......+....+....         ...+.+++|+|++..+++++.|+                        
T Consensus       139 ~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (723)
T 1xfd_A          139 CAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHY  218 (723)
T ss_dssp             ESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEEC
T ss_pred             EECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccC
Confidence            999886542111111111100000         11347899999999999887542                        


Q ss_pred             ----------cEEEEECCCCcEEEEEccc-----cCCCeEEEEEcCCCCcEEEEEEC----CCcEEEEECCCCCceeEEE
Q 004969          573 ----------NIALYDINSGRRLQVFADM-----HKEHINVVKFSNHSPSIFATSSF----DQDVKLWDLRQKPIQPCYT  633 (721)
Q Consensus       573 ----------~IrlWDl~s~~~v~~l~~~-----h~~~V~sI~fsPdg~~lLaSgs~----DgtIrIWDlrs~~~~~~~~  633 (721)
                                .|++||+.+++....+...     +...+..++|+||| +++++.+.    +..|++||+.+++...+..
T Consensus       219 ~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~  297 (723)
T 1xfd_A          219 PKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATST-KVAVTWLNRAQNVSILTLCDATTGVCTKKHE  297 (723)
T ss_dssp             CBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSS-EEEEEEEETTSCEEEEEEEETTTCCEEEEEE
T ss_pred             CCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCC-eEEEEEEcCCCCeEEEEEEeCCCCcceEEEE
Confidence                      7999999988865666531     25678999999999 67766543    3579999999987654443


Q ss_pred             ecCCCCe-----EEEEEecCCCEEEE--EeCCC------cEEEEE-cCCCc---cccc---ccCeEE-EEECCCC
Q 004969          634 ASSSKGN-----VMVCFSPDDHYLLG--KGSGT------SMFVQS-LRGDP---FRDF---NMSILA-AYTRPSS  687 (721)
Q Consensus       634 ~~~~~~~-----vsl~fSpdg~~Las--gs~Dg------~I~VWD-l~g~~---l~~~---~~~V~~-v~fsP~~  687 (721)
                      .. +.+.     ..++|+|||++|+.  +..++      .|++|| ..+..   .+..   ...+.. ++|+|++
T Consensus       298 ~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg  371 (723)
T 1xfd_A          298 DE-SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKG  371 (723)
T ss_dssp             EE-CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTT
T ss_pred             ec-cCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCC
Confidence            22 1121     25799999997775  44566      577788 44333   3322   234554 6899999

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.66  E-value=8.4e-15  Score=153.33  Aligned_cols=194  Identities=11%  Similarity=0.047  Sum_probs=145.3

Q ss_pred             eEEEEEeCCCCCEE-EEEECCCeEEEEECCCCeEEEEeecCC---CCCCeEEEEEeeCCCCEEEEEe------------C
Q 004969          456 PRQFEYHPSISCLM-VFGTLDGEIVVVNHENENIVSYIPSFG---AMNSVLGLCWLKKYPSKLIAGS------------D  519 (721)
Q Consensus       456 V~~lafsP~dg~~L-asGs~DG~I~IWdl~tg~~i~~l~~~~---H~~~V~sl~fsp~d~~~LaSgs------------~  519 (721)
                      +..++|+| +++++ +++..++.|.+||+.+++.+..+....   |...+.+++|+ ++++++++++            .
T Consensus        36 ~~~~~~s~-dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~~~~~~~~~  113 (337)
T 1pby_B           36 PMVPMVAP-GGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALS-PDGKTLAIYESPVRLELTHFEVQ  113 (337)
T ss_dssp             CCCEEECT-TSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEEC-TTSSEEEEEEEEEEECSSCEEEC
T ss_pred             ccceEEcC-CCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEEC-CCCCEEEEEeccccccccccccc
Confidence            67799999 77655 566678999999999999887776422   12257789998 6888888876            5


Q ss_pred             CCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcccc-------
Q 004969          520 NGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMH-------  592 (721)
Q Consensus       520 DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h-------  592 (721)
                      ++.|.+||+.+++.          ...+.....+.+++|+|++..++++  ++.|++||+.+++.+..+...+       
T Consensus       114 ~~~i~v~d~~~~~~----------~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~  181 (337)
T 1pby_B          114 PTRVALYDAETLSR----------RKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYA  181 (337)
T ss_dssp             CCEEEEEETTTTEE----------EEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBC
T ss_pred             CceEEEEECCCCcE----------EEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCcee
Confidence            79999999987543          1122223456788999999988887  6889999999887765554211       


Q ss_pred             ----------------------------------------------------------CCCeEEEEEcCCCCcEEEEEEC
Q 004969          593 ----------------------------------------------------------KEHINVVKFSNHSPSIFATSSF  614 (721)
Q Consensus       593 ----------------------------------------------------------~~~V~sI~fsPdg~~lLaSgs~  614 (721)
                                                                                ...+.+++|+|+| ..++++  
T Consensus       182 s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~--  258 (337)
T 1pby_B          182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK-TRAFGA--  258 (337)
T ss_dssp             CCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTS-SEEEEE--
T ss_pred             CCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCC-CEEEEe--
Confidence                                                                      1234568999999 677776  


Q ss_pred             CCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004969          615 DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRG  668 (721)
Q Consensus       615 DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g  668 (721)
                      ++.|++||+.+++...  .+.....+.+++|+|+|+++++++.++.|++||+..
T Consensus       259 ~~~v~~~d~~~~~~~~--~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~  310 (337)
T 1pby_B          259 YNVLESFDLEKNASIK--RVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAET  310 (337)
T ss_dssp             ESEEEEEETTTTEEEE--EEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred             CCeEEEEECCCCcCcc--eecCCCceeeEEECCCCCEEEEEcCCCcEEEEECcC
Confidence            7999999999875433  333334455899999999999999999999999973

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.66  E-value=2e-14  Score=150.49  Aligned_cols=208  Identities=12%  Similarity=0.060  Sum_probs=148.5

Q ss_pred             CEEEEEECCCeEEEEECCCCeEEEEeecCCCCC-CeEEEEEeeCCCCE-EEEEeCCCeEEEEEcCCCCCcccccccCcce
Q 004969          467 CLMVFGTLDGEIVVVNHENENIVSYIPSFGAMN-SVLGLCWLKKYPSK-LIAGSDNGSLKLYDIRHMPPSIRGMHYGAGT  544 (721)
Q Consensus       467 ~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~-~V~sl~fsp~d~~~-LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~  544 (721)
                      +++++++.++.|.+||..+++.+..+.. ++.. .+.+++|+ ++++. +++++.++.|.+||+.+++............
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~s-~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~   79 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITI-ADAGPTPMVPMVA-PGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE   79 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEEC-TTCTTCCCCEEEC-TTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEc-CCCCCCccceEEc-CCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc
Confidence            4789999999999999999998888764 2222 47889998 56655 4666678999999998865421100000000


Q ss_pred             eEeccCCCeEEEEEecCCCEEEEEe------------CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969          545 VTFDEFDQLTSVHVNSMDELFLASG------------YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS  612 (721)
Q Consensus       545 ~~~~~~~~V~sv~~sp~~~~lls~g------------~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg  612 (721)
                          +...+.+++|+|++..+++++            .++.|.+||+.+++.+..+.  ....+.+++|+|+| +.++++
T Consensus        80 ----~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg-~~l~~~  152 (337)
T 1pby_B           80 ----RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE--APRQITMLAWARDG-SKLYGL  152 (337)
T ss_dssp             ----EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE--CCSSCCCEEECTTS-SCEEEE
T ss_pred             ----ccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe--CCCCcceeEECCCC-CEEEEe
Confidence                011467889999999988886            57999999999998888776  34567889999999 556665


Q ss_pred             ECCCcEEEEECCCCCceeEEEecC--------------------------------------------------------
Q 004969          613 SFDQDVKLWDLRQKPIQPCYTASS--------------------------------------------------------  636 (721)
Q Consensus       613 s~DgtIrIWDlrs~~~~~~~~~~~--------------------------------------------------------  636 (721)
                        ++.|++||+.+++.........                                                        
T Consensus       153 --~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  230 (337)
T 1pby_B          153 --GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE  230 (337)
T ss_dssp             --SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC
T ss_pred             --CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCC
Confidence              6889999998764322211111                                                        


Q ss_pred             --------C-CCeEEEEEecCCCEEEEEeCCCcEEEEEcCCC-ccccc--ccCeEEEEECCCC
Q 004969          637 --------S-KGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGD-PFRDF--NMSILAAYTRPSS  687 (721)
Q Consensus       637 --------~-~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~-~l~~~--~~~V~~v~fsP~~  687 (721)
                              + .....++|+|+|++++++  ++.|++||+... ....+  ...+..++|+|++
T Consensus       231 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg  291 (337)
T 1pby_B          231 MAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDG  291 (337)
T ss_dssp             EEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTS
T ss_pred             ceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCC
Confidence                    0 012258999999999988  799999999743 22222  3467889999999

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.65  E-value=5.4e-16  Score=181.71  Aligned_cols=216  Identities=10%  Similarity=0.014  Sum_probs=157.0

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCC---CeEEEEEeeCCCCEEEEEeCC---------CeE
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMN---SVLGLCWLKKYPSKLIAGSDN---------GSL  523 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~---~V~sl~fsp~d~~~LaSgs~D---------GtV  523 (721)
                      +.+++|+| +++++++ +.||+|++||+.+++....+.  +|..   .|.+++|+ +++++|++++.+         +.+
T Consensus        19 ~~~~~~sp-dg~~~~~-~~dg~i~~~d~~~g~~~~~~~--~~~~~~~~v~~~~~S-pDg~~l~~~~~~~~~~~~~~~~~i   93 (723)
T 1xfd_A           19 DPEAKWIS-DTEFIYR-EQKGTVRLWNVETNTSTVLIE--GKKIESLRAIRYEIS-PDREYALFSYNVEPIYQHSYTGYY   93 (723)
T ss_dssp             CCCCCBSS-SSCBCCC-CSSSCEEEBCGGGCCCEEEEC--TTTTTTTTCSEEEEC-TTSSEEEEEESCCCCSSSCCCSEE
T ss_pred             ccccEEcC-CCcEEEE-eCCCCEEEEECCCCcEEEEec--cccccccccceEEEC-CCCCEEEEEecCccceeecceeeE
Confidence            66789999 8887766 789999999999998877765  4443   49999998 789999999874         788


Q ss_pred             EEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCC--------
Q 004969          524 KLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEH--------  595 (721)
Q Consensus       524 rIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~--------  595 (721)
                      .+||+.+++..  .+....     .+...+..++|+|+|..++.++. +.|++||+.+++..+.... +...        
T Consensus        94 ~~~d~~~~~~~--~l~~~~-----~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~-~~~~~~~~g~~~  164 (723)
T 1xfd_A           94 VLSKIPHGDPQ--SLDPPE-----VSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVST-GKEGVIYNGLSD  164 (723)
T ss_dssp             EEEESSSCCCE--ECCCTT-----CCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECC-CBTTTEEEEECC
T ss_pred             EEEECCCCceE--eccCCc-----cccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecC-CCCCceECcccc
Confidence            89999986541  111110     12234788999999999998886 7899999999887766654 3333        


Q ss_pred             ----------eEEEEEcCCCCcEEEEEECCC----------------------------------cEEEEECCCCCceeE
Q 004969          596 ----------INVVKFSNHSPSIFATSSFDQ----------------------------------DVKLWDLRQKPIQPC  631 (721)
Q Consensus       596 ----------V~sI~fsPdg~~lLaSgs~Dg----------------------------------tIrIWDlrs~~~~~~  631 (721)
                                +.+++|+||| +.|++++.|+                                  .|++||+.+++.  .
T Consensus       165 ~v~~ee~~~~~~~~~~SpDg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~--~  241 (723)
T 1xfd_A          165 WLYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH--D  241 (723)
T ss_dssp             HHHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC--C
T ss_pred             eeEEEEeccCcceEEECCCC-CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce--e
Confidence                      3789999999 7788776543                                  799999988753  2


Q ss_pred             EEecCC------CCeE-EEEEecCCCEEEEEeCC----CcEEEEEcCCCcccc-----cccCe----EEEEECCCCC
Q 004969          632 YTASSS------KGNV-MVCFSPDDHYLLGKGSG----TSMFVQSLRGDPFRD-----FNMSI----LAAYTRPSSK  688 (721)
Q Consensus       632 ~~~~~~------~~~v-sl~fSpdg~~Lasgs~D----g~I~VWDl~g~~l~~-----~~~~V----~~v~fsP~~~  688 (721)
                      ..+..+      ...+ .++|||||+++++....    ..|++||+.+.....     +...+    ..+.|+|+++
T Consensus       242 ~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~  318 (723)
T 1xfd_A          242 LEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGR  318 (723)
T ss_dssp             EECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSC
T ss_pred             EEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCC
Confidence            233322      3344 79999999999776533    478999997433221     12223    2789999993

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.65  E-value=3.3e-15  Score=171.34  Aligned_cols=227  Identities=11%  Similarity=0.062  Sum_probs=162.3

Q ss_pred             CeEEEEEeCCCCCEEEEEEC-CCeEEEEECCCCeEEEEeecCCCC-CCeEEEEEeeCCCCEEEEEeC---CCeEEEEEcC
Q 004969          455 RPRQFEYHPSISCLMVFGTL-DGEIVVVNHENENIVSYIPSFGAM-NSVLGLCWLKKYPSKLIAGSD---NGSLKLYDIR  529 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~-DG~I~IWdl~tg~~i~~l~~~~H~-~~V~sl~fsp~d~~~LaSgs~---DGtVrIWDi~  529 (721)
                      .|.+++|+| ||+.||+++. ||+++||++.+++..+ +.  .|. ..+..++|+ ++ ..+++++.   +...++|.+.
T Consensus        23 ~~~~~~~~~-DG~~la~~s~~~g~~~lw~~~~g~~~~-lt--~~~~~~~~~~~~s-pd-~~l~~~~~~~g~~~~~l~~~~   96 (582)
T 3o4h_A           23 EKYSLQGVV-DGDKLLVVGFSEGSVNAYLYDGGETVK-LN--REPINSVLDPHYG-VG-RVILVRDVSKGAEQHALFKVN   96 (582)
T ss_dssp             CEEEEEEEE-TTTEEEEEEEETTEEEEEEEETTEEEE-CC--SSCCSEECEECTT-CS-EEEEEEECSTTSCCEEEEEEE
T ss_pred             chheeecCC-CCCeEEEEEccCCceeEEEEcCCCcEe-ee--cccccccccccCC-CC-eEEEEeccCCCCcceEEEEEe
Confidence            589999999 9999999887 9999999997665543 33  344 678999998 45 67776664   4555665543


Q ss_pred             C----CCCccccccc---------Cc----------cee----------EeccCCCeEEEEEecCCCEEEEEeCC----C
Q 004969          530 H----MPPSIRGMHY---------GA----------GTV----------TFDEFDQLTSVHVNSMDELFLASGYS----K  572 (721)
Q Consensus       530 ~----~~~~~~~~~~---------~~----------~~~----------~~~~~~~V~sv~~sp~~~~lls~g~D----g  572 (721)
                      .    ....+....+         ..          ...          .+... +..+++|+|+|..+++++.+    +
T Consensus        97 ~~~~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~-~~~~~~~spDG~~la~~~~~~~~~~  175 (582)
T 3o4h_A           97 TSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARL-PGFGFVSDIRGDLIAGLGFFGGGRV  175 (582)
T ss_dssp             TTSTTCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEE-SSCEEEEEEETTEEEEEEEEETTEE
T ss_pred             ccCCCccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecC-CCceEEECCCCCEEEEEEEcCCCCe
Confidence            3    2111100000         00          000          00000 11678999999999988766    7


Q ss_pred             cEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCC--cEEEEECCCCCceeEEEecCCCCeE-EEE-----
Q 004969          573 NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQ--DVKLWDLRQKPIQPCYTASSSKGNV-MVC-----  644 (721)
Q Consensus       573 ~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~Dg--tIrIWDlrs~~~~~~~~~~~~~~~v-sl~-----  644 (721)
                      .|++||+.+++.. .+.. |...+..++|+||| +.++++..++  .|++||+.+++..   .+.++...+ .++     
T Consensus       176 ~i~~~d~~~g~~~-~l~~-~~~~~~~~~~SpDG-~~l~~~~~~~~~~i~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~  249 (582)
T 3o4h_A          176 SLFTSNLSSGGLR-VFDS-GEGSFSSASISPGM-KVTAGLETAREARLVTVDPRDGSVE---DLELPSKDFSSYRPTAIT  249 (582)
T ss_dssp             EEEEEETTTCCCE-EECC-SSCEEEEEEECTTS-CEEEEEECSSCEEEEEECTTTCCEE---ECCCSCSHHHHHCCSEEE
T ss_pred             EEEEEcCCCCCce-Eeec-CCCccccceECCCC-CEEEEccCCCeeEEEEEcCCCCcEE---EccCCCcChhhhhhcccc
Confidence            8999999988765 5554 88889999999999 7888888888  8999999988653   444554444 455     


Q ss_pred             ---EecCCCEEEEEeCCCcEEEEEcCCCcccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          645 ---FSPDDHYLLGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       645 ---fSpdg~~Lasgs~Dg~I~VWDl~g~~l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                         |+|||.++++++.++.+++|++ |+........+..++|+ ++       .++++++..
T Consensus       250 ~~~~spdg~~~~~~~~~g~~~l~~~-g~~~~~~~~~v~~~~~s-dg-------~~l~~~s~~  302 (582)
T 3o4h_A          250 WLGYLPDGRLAVVARREGRSAVFID-GERVEAPQGNHGRVVLW-RG-------KLVTSHTSL  302 (582)
T ss_dssp             EEEECTTSCEEEEEEETTEEEEEET-TEEECCCSSEEEEEEEE-TT-------EEEEEEEET
T ss_pred             ceeEcCCCcEEEEEEcCCcEEEEEE-CCeeccCCCceEEEEec-CC-------EEEEEEcCC
Confidence               9999999999999999999999 76655556678889999 88       566655543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.64  E-value=6.9e-15  Score=172.16  Aligned_cols=223  Identities=10%  Similarity=0.096  Sum_probs=158.7

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCC----
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH----  530 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~----  530 (721)
                      .|.+++|+| + +.++.+. +++|++||+.+++.....   .+...+.+++|+ ++++.|+++ .|+.|++||+.+    
T Consensus        83 ~v~~~~~sp-d-~~~~~~~-~~~i~~~d~~~~~~~~l~---~~~~~~~~~~~S-pdG~~la~~-~~~~i~v~~~~~~~~~  154 (706)
T 2z3z_A           83 PSFRTLDAG-R-GLVVLFT-QGGLVGFDMLARKVTYLF---DTNEETASLDFS-PVGDRVAYV-RNHNLYIARGGKLGEG  154 (706)
T ss_dssp             CCEEEEETT-T-TEEEEEE-TTEEEEEETTTTEEEEEE---CCTTCCTTCEEC-TTSSEEEEE-ETTEEEEEECBCTTSC
T ss_pred             CceeEEECC-C-CeEEEEE-CCEEEEEECCCCceEEcc---CCcccccCCcCC-CCCCEEEEE-ECCeEEEEecCccccc
Confidence            489999999 6 5555554 599999999988765544   455678889998 788888885 689999999988    


Q ss_pred             -CCCcccccccCcce-----eEeccCCCeEEEEEecCCCEEEEEe---------------------------------CC
Q 004969          531 -MPPSIRGMHYGAGT-----VTFDEFDQLTSVHVNSMDELFLASG---------------------------------YS  571 (721)
Q Consensus       531 -~~~~~~~~~~~~~~-----~~~~~~~~V~sv~~sp~~~~lls~g---------------------------------~D  571 (721)
                       ++.......+....     +.-.+...+.++.|+|++..+++++                                 .+
T Consensus       155 ~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~  234 (706)
T 2z3z_A          155 MSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHH  234 (706)
T ss_dssp             CCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCE
T ss_pred             CCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCe
Confidence             65421111111100     0001112358899999999999987                                 34


Q ss_pred             CcEEEEECCCCcEEEEEcc-ccCCCeEEEEEcCCCCcEEEEEECCC-----cEEEEECCCC-CceeEEEecCCCC---e-
Q 004969          572 KNIALYDINSGRRLQVFAD-MHKEHINVVKFSNHSPSIFATSSFDQ-----DVKLWDLRQK-PIQPCYTASSSKG---N-  640 (721)
Q Consensus       572 g~IrlWDl~s~~~v~~l~~-~h~~~V~sI~fsPdg~~lLaSgs~Dg-----tIrIWDlrs~-~~~~~~~~~~~~~---~-  640 (721)
                      ..|++||+.+++....... .|...+..++|+|+| +.+++++.++     .|++||+.++ ....+.... +..   . 
T Consensus       235 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~-~~~~~~~~  312 (706)
T 2z3z_A          235 VTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDE-NILYVAEVNRAQNECKVNAYDAETGRFVRTLFVET-DKHYVEPL  312 (706)
T ss_dssp             EEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTS-SEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEE-CSSCCCCC
T ss_pred             eEEEEEECCCCceEeeccCCCCceeEeeEEEECCC-CEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEcc-CCCeECcc
Confidence            6799999998886554432 367789999999999 7788877775     8999999988 333333221 221   1 


Q ss_pred             EEEEEec--CCCEEEEEeCCCcEEEEEcC--CCcc---cccccCeEE-EEECCCC
Q 004969          641 VMVCFSP--DDHYLLGKGSGTSMFVQSLR--GDPF---RDFNMSILA-AYTRPSS  687 (721)
Q Consensus       641 vsl~fSp--dg~~Lasgs~Dg~I~VWDl~--g~~l---~~~~~~V~~-v~fsP~~  687 (721)
                      ..++|+|  ||+++++++.++.+++|.+.  +...   ..+...+.. ++|+|++
T Consensus       313 ~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg  367 (706)
T 2z3z_A          313 HPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKG  367 (706)
T ss_dssp             SCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTS
T ss_pred             CCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCC
Confidence            2579999  99999999999988888764  4433   333445766 7999999

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.63  E-value=1.4e-14  Score=152.70  Aligned_cols=215  Identities=8%  Similarity=0.056  Sum_probs=149.0

Q ss_pred             EEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEE-EEEeCCCeEEEEEcCCCCCcccc
Q 004969          459 FEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKL-IAGSDNGSLKLYDIRHMPPSIRG  537 (721)
Q Consensus       459 lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~L-aSgs~DGtVrIWDi~~~~~~~~~  537 (721)
                      +++++ ++.++++++.+++|++||..+++.+..+.. +....+..++|+ ++++.+ +++..++.|.+||+.+++.....
T Consensus         5 ~~~~~-~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~s-~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~   81 (349)
T 1jmx_B            5 PALKA-GHEYMIVTNYPNNLHVVDVASDTVYKSCVM-PDKFGPGTAMMA-PDNRTAYVLNNHYGDIYGIDLDTCKNTFHA   81 (349)
T ss_dssp             CCCCT-TCEEEEEEETTTEEEEEETTTTEEEEEEEC-SSCCSSCEEEEC-TTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ccccC-CCEEEEEeCCCCeEEEEECCCCcEEEEEec-CCCCCCceeEEC-CCCCEEEEEeCCCCcEEEEeCCCCcEEEEE
Confidence            45666 788999999999999999999998888764 222257789998 677654 56667899999999875432110


Q ss_pred             cccCcceeEeccCCCeEEEEEecCCCEEEEEeCC------------CcEEEEECCCCc---EEEEEccccCCCeEEEEEc
Q 004969          538 MHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS------------KNIALYDINSGR---RLQVFADMHKEHINVVKFS  602 (721)
Q Consensus       538 ~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D------------g~IrlWDl~s~~---~v~~l~~~h~~~V~sI~fs  602 (721)
                      ........   ....+..++|+|++..+++++.+            +.|.+||+.+++   .+..+.  +...+.+++|+
T Consensus        82 ~~~~~~~~---~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~s  156 (349)
T 1jmx_B           82 NLSSVPGE---VGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP--MPRQVYLMRAA  156 (349)
T ss_dssp             ESCCSTTE---EEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE--CCSSCCCEEEC
T ss_pred             Eccccccc---ccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc--CCCcccceeEC
Confidence            00000000   01236789999999999998865            899999999844   334444  44568899999


Q ss_pred             CCCCcEEEEEECCCcEEEEECCCCCceeEEEecC----------------------------------------------
Q 004969          603 NHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASS----------------------------------------------  636 (721)
Q Consensus       603 Pdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~----------------------------------------------  636 (721)
                      |+| ++ ++++  +.|++||+.+++.........                                              
T Consensus       157 ~dg-~l-~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  232 (349)
T 1jmx_B          157 DDG-SL-YVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLL  232 (349)
T ss_dssp             TTS-CE-EEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEE
T ss_pred             CCC-cE-EEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccc
Confidence            999 54 4444  349999998876443322211                                              


Q ss_pred             ---------------------CCCeEEEEEec-CCCEEEEEeCCCcEEEEEcCCCc-ccc--cccCeEEEEECCCC
Q 004969          637 ---------------------SKGNVMVCFSP-DDHYLLGKGSGTSMFVQSLRGDP-FRD--FNMSILAAYTRPSS  687 (721)
Q Consensus       637 ---------------------~~~~vsl~fSp-dg~~Lasgs~Dg~I~VWDl~g~~-l~~--~~~~V~~v~fsP~~  687 (721)
                                           ......++|+| +|++++++  ++.|++||+.... ...  ....+..++|+|++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg  306 (349)
T 1jmx_B          233 YGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKG  306 (349)
T ss_dssp             EEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSS
T ss_pred             eeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCC
Confidence                                 00122567789 99999988  8899999998433 222  23457789999998

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.63  E-value=5.4e-15  Score=173.88  Aligned_cols=222  Identities=10%  Similarity=0.024  Sum_probs=158.7

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCCC---eEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENE---NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP  532 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg---~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~  532 (721)
                      |.+++|+| |+++|++++. +.|++||+.++   ... .+.  .|...+..++|+ +++++|+.++. +.|.+||+.+++
T Consensus       111 v~~~~~Sp-Dg~~l~~~~~-~~i~~~d~~~~~~~~~~-~l~--~~~~~~~~~~~S-PDG~~la~~~~-~~i~~~d~~~g~  183 (741)
T 2ecf_A          111 IVDYQWSP-DAQRLLFPLG-GELYLYDLKQEGKAAVR-QLT--HGEGFATDAKLS-PKGGFVSFIRG-RNLWVIDLASGR  183 (741)
T ss_dssp             SCCCEECT-TSSEEEEEET-TEEEEEESSSCSTTSCC-BCC--CSSSCEEEEEEC-TTSSEEEEEET-TEEEEEETTTTE
T ss_pred             cceeEECC-CCCEEEEEeC-CcEEEEECCCCCcceEE-Ecc--cCCcccccccCC-CCCCEEEEEeC-CcEEEEecCCCC
Confidence            67899999 9999999986 99999999987   433 333  667889999999 78999988874 699999998854


Q ss_pred             CcccccccCcceeEec--------cCCCeEEEEEecCCCEEEEEeCCC--------------------------------
Q 004969          533 PSIRGMHYGAGTVTFD--------EFDQLTSVHVNSMDELFLASGYSK--------------------------------  572 (721)
Q Consensus       533 ~~~~~~~~~~~~~~~~--------~~~~V~sv~~sp~~~~lls~g~Dg--------------------------------  572 (721)
                      ..... ..+...+...        ....+.+++|+|++..+++++.|+                                
T Consensus       184 ~~~~~-~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~  262 (741)
T 2ecf_A          184 QMQLT-ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQ  262 (741)
T ss_dssp             EEECC-CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred             EEEec-cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence            32111 1111101000        011257899999999999987665                                


Q ss_pred             -cEEEEECCC-CcEEEEEcc-ccCCCeEEEEEcCCCCcEEEEEEC-----CCcEEEEECCCCCceeEEEecCCCC--eE-
Q 004969          573 -NIALYDINS-GRRLQVFAD-MHKEHINVVKFSNHSPSIFATSSF-----DQDVKLWDLRQKPIQPCYTASSSKG--NV-  641 (721)
Q Consensus       573 -~IrlWDl~s-~~~v~~l~~-~h~~~V~sI~fsPdg~~lLaSgs~-----DgtIrIWDlrs~~~~~~~~~~~~~~--~v-  641 (721)
                       .|++||+.+ ++....... .|...+..++| |+| +.|++++.     +..|++||+.+++...+........  .+ 
T Consensus       263 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg-~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~  340 (741)
T 2ecf_A          263 VKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDP-QHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHN  340 (741)
T ss_dssp             EEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EET-TEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCS
T ss_pred             eEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCC-CEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCC
Confidence             789999998 876554432 37788999999 999 56665543     5679999999987655544322111  12 


Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEEcC--CC--cccccccCeEEE-EECCCC
Q 004969          642 MVCFSPDDHYLLGKGSGTSMFVQSLR--GD--PFRDFNMSILAA-YTRPSS  687 (721)
Q Consensus       642 sl~fSpdg~~Lasgs~Dg~I~VWDl~--g~--~l~~~~~~V~~v-~fsP~~  687 (721)
                      .++|+|||+++++++.+|.++||.+.  +.  .+..+...+..+ .|+|++
T Consensus       341 ~~~~spdg~~~~~~~~~g~~~l~~~~~~~~~~~l~~~~~~v~~~~~~s~dg  391 (741)
T 2ecf_A          341 SLRFLDDGSILWSSERTGFQHLYRIDSKGKAAALTHGNWSVDELLAVDEKA  391 (741)
T ss_dssp             CCEECTTSCEEEEECTTSSCEEEEECSSSCEEESCCSSSCEEEEEEEETTT
T ss_pred             ceEECCCCeEEEEecCCCccEEEEEcCCCCeeeeeecceEEEeEeEEeCCC
Confidence            68999999999999999977777654  44  223334567776 599999

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.62  E-value=3e-14  Score=150.09  Aligned_cols=196  Identities=13%  Similarity=0.060  Sum_probs=144.2

Q ss_pred             eEEEEEeCCCCCEE-EEEECCCeEEEEECCCCeEEEEeecCCC----CCCeEEEEEeeCCCCEEEEEeCC----------
Q 004969          456 PRQFEYHPSISCLM-VFGTLDGEIVVVNHENENIVSYIPSFGA----MNSVLGLCWLKKYPSKLIAGSDN----------  520 (721)
Q Consensus       456 V~~lafsP~dg~~L-asGs~DG~I~IWdl~tg~~i~~l~~~~H----~~~V~sl~fsp~d~~~LaSgs~D----------  520 (721)
                      +..++|+| +++++ +++..++.|.+||+.+++....+.....    ...+.+++|+ ++++++++++.+          
T Consensus        45 ~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~~~~  122 (349)
T 1jmx_B           45 PGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAIS-PDGKEVYATVNPTQRLNDHYVV  122 (349)
T ss_dssp             SCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEEC-TTSSEEEEEEEEEEECSSCEEE
T ss_pred             CceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEEC-CCCCEEEEEccccccccccccc
Confidence            67899999 77755 5556789999999999998877763211    2347789998 788888888865          


Q ss_pred             --CeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcccc------
Q 004969          521 --GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMH------  592 (721)
Q Consensus       521 --GtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h------  592 (721)
                        +.|.+||+.+++..       .....+.+...+.+++|+|++. +++++.  .|.+||+.+++.+..+....      
T Consensus       123 ~~~~i~~~d~~~~~~~-------~~~~~~~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~  192 (349)
T 1jmx_B          123 KPPRLEVFSTADGLEA-------KPVRTFPMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGY  192 (349)
T ss_dssp             CCCEEEEEEGGGGGGB-------CCSEEEECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTB
T ss_pred             CCCeEEEEECCCcccc-------ceeeeccCCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccc
Confidence              89999999874321       0112233444688899999998 666543  49999999998877665311      


Q ss_pred             -------------------------------------------------------------CCCeEEEEEcC-CCCcEEE
Q 004969          593 -------------------------------------------------------------KEHINVVKFSN-HSPSIFA  610 (721)
Q Consensus       593 -------------------------------------------------------------~~~V~sI~fsP-dg~~lLa  610 (721)
                                                                                   ...+..++|+| ++ .+++
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg-~~l~  271 (349)
T 1jmx_B          193 SAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP-NQIY  271 (349)
T ss_dssp             CCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT-TEEE
T ss_pred             cCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCC-CEEE
Confidence                                                                         01345677889 88 6777


Q ss_pred             EEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004969          611 TSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRG  668 (721)
Q Consensus       611 Sgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g  668 (721)
                      ++  ++.|++||+.+++.....  ........++|+|+|++|++++.++.|++||+..
T Consensus       272 ~~--~~~v~~~d~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~  325 (349)
T 1jmx_B          272 GV--LNRLAKYDLKQRKLIKAA--NLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT  325 (349)
T ss_dssp             EE--ESEEEEEETTTTEEEEEE--ECSSCCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred             EE--cCeEEEEECccCeEEEEE--cCCCCccceEECCCCCEEEEecCCCeEEEEeccc
Confidence            77  889999999987543333  3333445899999999999888899999999973

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.61  E-value=1.7e-14  Score=168.75  Aligned_cols=218  Identities=11%  Similarity=0.164  Sum_probs=154.8

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCC-----CeEEEEeecCCCCCC--------------eEEEEEeeCCCCEEEE
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHEN-----ENIVSYIPSFGAMNS--------------VLGLCWLKKYPSKLIA  516 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~t-----g~~i~~l~~~~H~~~--------------V~sl~fsp~d~~~LaS  516 (721)
                      +.+++|+| +|++|+++ .++.|++|++.+     ++......  .+...              +.++.|+ +++++|++
T Consensus       123 ~~~~~~Sp-dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~--~~~~~~~~g~~~~~ee~~~~~~~~~S-pDg~~la~  197 (706)
T 2z3z_A          123 TASLDFSP-VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTI--DGTETLVYGQAVHQREFGIEKGTFWS-PKGSCLAF  197 (706)
T ss_dssp             CTTCEECT-TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCS--CCBTTEEESSCCGGGCTTCCCSEEEC-TTSSEEEE
T ss_pred             ccCCcCCC-CCCEEEEE-ECCeEEEEecCcccccCCCcEEecc--CCCCCeEcccchhhhhcCCCceEEEC-CCCCEEEE
Confidence            66789999 99999985 689999999998     77655433  22222              4789998 78999999


Q ss_pred             Ee---------------------------------CCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCC
Q 004969          517 GS---------------------------------DNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDE  563 (721)
Q Consensus       517 gs---------------------------------~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~  563 (721)
                      ++                                 .++.|.+||+.+++......       ...+...+.+++|+|++.
T Consensus       198 ~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~-------~~~~~~~~~~~~~spdg~  270 (706)
T 2z3z_A          198 YRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT-------GEPKEKFLTNLSWSPDEN  270 (706)
T ss_dssp             EEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC-------CSCTTCEEEEEEECTTSS
T ss_pred             EEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc-------CCCCceeEeeEEEECCCC
Confidence            87                                 45789999998754311100       012334589999999999


Q ss_pred             EEEEEeCCC-----cEEEEECCCCcEEEEEc-cccCC---CeEEEEEcC--CCCcEEEEEECCCcEEEEECC-CCCceeE
Q 004969          564 LFLASGYSK-----NIALYDINSGRRLQVFA-DMHKE---HINVVKFSN--HSPSIFATSSFDQDVKLWDLR-QKPIQPC  631 (721)
Q Consensus       564 ~lls~g~Dg-----~IrlWDl~s~~~v~~l~-~~h~~---~V~sI~fsP--dg~~lLaSgs~DgtIrIWDlr-s~~~~~~  631 (721)
                      .+++++.++     .|++||+.+++....+. ..+..   .+..++|+|  +| .++++++.|+.+++|++. ++.  ..
T Consensus       271 ~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg-~~l~~~~~~g~~~l~~~~~~~~--~~  347 (706)
T 2z3z_A          271 ILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNN-QFIWQSRRDGWNHLYLYDTTGR--LI  347 (706)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSS-EEEEEECTTSSCEEEEEETTSC--EE
T ss_pred             EEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCC-EEEEEEccCCccEEEEEECCCC--EE
Confidence            999887665     89999999984433332 21222   246789999  98 789999999999999876 332  23


Q ss_pred             EEecCCCCeE-E-EEEecCCCEEEEEeCC-C----cEEEEEcCCCccc--ccccCeEEEEECCCCC
Q 004969          632 YTASSSKGNV-M-VCFSPDDHYLLGKGSG-T----SMFVQSLRGDPFR--DFNMSILAAYTRPSSK  688 (721)
Q Consensus       632 ~~~~~~~~~v-s-l~fSpdg~~Lasgs~D-g----~I~VWDl~g~~l~--~~~~~V~~v~fsP~~~  688 (721)
                      ..+..+...+ . ++|+|+|+.|+.++.+ +    .|+.||+.+....  .+...+..++|+|+++
T Consensus       348 ~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~  413 (706)
T 2z3z_A          348 RQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDLTPESGMHRTQLSPDGS  413 (706)
T ss_dssp             EECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEESCCSSSEEEEEECTTSS
T ss_pred             EecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceeccCCCceEEEEECCCCC
Confidence            4445555545 4 7999999988766544 3    5677777643322  2345788999999993

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.61  E-value=1.8e-14  Score=177.14  Aligned_cols=220  Identities=12%  Similarity=0.075  Sum_probs=166.1

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCC---------CCCCeEEEEEeeCCCCEEEEEeCCCeEEEE
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFG---------AMNSVLGLCWLKKYPSKLIAGSDNGSLKLY  526 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~---------H~~~V~sl~fsp~d~~~LaSgs~DGtVrIW  526 (721)
                      +...+|+| ++++++.+. ++.|.+|++..+... .+....         |...+.+++|+|+++..+++++ ++.|.+|
T Consensus       247 ~~~~~~Sp-DG~~la~~~-~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~  322 (1045)
T 1k32_A          247 YYPRHLNT-DGRRILFSK-GGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQ  322 (1045)
T ss_dssp             SCEEEEEE-SSSCEEEEE-TTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEE
T ss_pred             cceeeEcC-CCCEEEEEe-CCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEE
Confidence            45679999 889888874 899999999654443 444211         3446899999845778888777 7899999


Q ss_pred             EcCCCCCcccccccCcceeEeccCC-CeEEEEEecCCCEEEEEeCCCcEE-EEECCCCcEEEEEccccCCCeEEEEEcCC
Q 004969          527 DIRHMPPSIRGMHYGAGTVTFDEFD-QLTSVHVNSMDELFLASGYSKNIA-LYDINSGRRLQVFADMHKEHINVVKFSNH  604 (721)
Q Consensus       527 Di~~~~~~~~~~~~~~~~~~~~~~~-~V~sv~~sp~~~~lls~g~Dg~Ir-lWDl~s~~~v~~l~~~h~~~V~sI~fsPd  604 (721)
                      ++.++...  .        ...+.. .+..++|+ ++..+++++.++.+. +||+.+++... +.+ |...+..++|+|+
T Consensus       323 ~~~~~~~~--~--------~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~-~~~~~~~~~~SpD  389 (1045)
T 1k32_A          323 DVSGTYVL--K--------VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEE-NLGNVFAMGVDRN  389 (1045)
T ss_dssp             CTTSSBEE--E--------CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCC-CCCSEEEEEECTT
T ss_pred             cCCCCceE--E--------ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecC-CccceeeeEECCC
Confidence            99875321  1        112333 57889999 888999988888888 99998776543 444 8889999999999


Q ss_pred             CCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCC----------cEEEEEcCCCcc--
Q 004969          605 SPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGT----------SMFVQSLRGDPF--  671 (721)
Q Consensus       605 g~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg----------~I~VWDl~g~~l--  671 (721)
                      | ..+++++.++.|++||+.+++...+  ..++.+.+ .++|||||++|++++.++          .|++||+.+...  
T Consensus       390 G-~~la~~~~~~~v~~~d~~tg~~~~~--~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~  466 (1045)
T 1k32_A          390 G-KFAVVANDRFEIMTVDLETGKPTVI--ERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA  466 (1045)
T ss_dssp             S-SEEEEEETTSEEEEEETTTCCEEEE--EECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE
T ss_pred             C-CEEEEECCCCeEEEEECCCCceEEe--ccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEE
Confidence            9 7999999999999999998865433  33455554 799999999999887654          899999985433  


Q ss_pred             -cccccCeEEEEECCCCCcccccccEEEEecC
Q 004969          672 -RDFNMSILAAYTRPSSKSEIVKVNLLASTDH  702 (721)
Q Consensus       672 -~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~  702 (721)
                       ..+...+..++|+|++       ..|++++.
T Consensus       467 l~~~~~~~~~~~~spdG-------~~l~~~s~  491 (1045)
T 1k32_A          467 ATTENSHDYAPAFDADS-------KNLYYLSY  491 (1045)
T ss_dssp             CSCSSSBEEEEEECTTS-------CEEEEEES
T ss_pred             eeCCCcccCCceEcCCC-------CEEEEEec
Confidence             3345568889999999       66666654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.60  E-value=1.9e-13  Score=145.27  Aligned_cols=204  Identities=8%  Similarity=0.078  Sum_probs=140.4

Q ss_pred             CeEEEEEeCCCCCEEEEEE-CCCeEEEEECC-CCe--EEEEeecCC-------CCCCeEEEEEeeCCCCEEEEEeCCCeE
Q 004969          455 RPRQFEYHPSISCLMVFGT-LDGEIVVVNHE-NEN--IVSYIPSFG-------AMNSVLGLCWLKKYPSKLIAGSDNGSL  523 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs-~DG~I~IWdl~-tg~--~i~~l~~~~-------H~~~V~sl~fsp~d~~~LaSgs~DGtV  523 (721)
                      .+..++|+| +++++++++ .++.|.+|++. +|.  .+..+...+       +...+.+++|+ ++++++++...++.|
T Consensus        87 ~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~s-pdg~l~v~~~~~~~v  164 (347)
T 3hfq_A           87 PPAYVAVDE-ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLT-PDNRLAVIDLGSDKV  164 (347)
T ss_dssp             CCSEEEEET-TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEEC-TTSCEEEEETTTTEE
T ss_pred             CCEEEEECC-CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEEC-CCCcEEEEeCCCCEE
Confidence            478899999 899888887 78999999995 333  233332211       12358899998 577777777778999


Q ss_pred             EEEEcCC-CCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCC--CcE--EEEEccccC----
Q 004969          524 KLYDIRH-MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINS--GRR--LQVFADMHK----  593 (721)
Q Consensus       524 rIWDi~~-~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s--~~~--v~~l~~~h~----  593 (721)
                      .+|++.. +.....      ..........+..++|+|++..+++++ .++.|.+|++..  ++.  +..+.. ..    
T Consensus       165 ~~~~~~~~g~~~~~------~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~-~~~~~~  237 (347)
T 3hfq_A          165 YVYNVSDAGQLSEQ------SVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKT-IPADYT  237 (347)
T ss_dssp             EEEEECTTSCEEEE------EEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES-SCTTCC
T ss_pred             EEEEECCCCcEEEe------eeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeee-cCCCCC
Confidence            9999983 321100      011111223567899999999777765 578999999874  543  223322 22    


Q ss_pred             --CCeEEEEEcCCCCcEEEEEECCCcEEEEECCC-CCceeEEEecCCCC-eEEEEEecCCCEEEEEeCC-CcEEEEEcC
Q 004969          594 --EHINVVKFSNHSPSIFATSSFDQDVKLWDLRQ-KPIQPCYTASSSKG-NVMVCFSPDDHYLLGKGSG-TSMFVQSLR  667 (721)
Q Consensus       594 --~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs-~~~~~~~~~~~~~~-~vsl~fSpdg~~Lasgs~D-g~I~VWDl~  667 (721)
                        ..+..++|+|+|..+++++..++.|.+||+.. +....+.....+.. +..++|+|||++|++++.+ +.|.+|++.
T Consensus       238 ~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          238 AHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             SCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence              45889999999944556777899999999973 23334444444333 4489999999999888765 899999665

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.55  E-value=4.6e-14  Score=165.71  Aligned_cols=214  Identities=10%  Similarity=0.002  Sum_probs=150.6

Q ss_pred             EEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCC---CeEEEEEeeCCCCEEEEEeC---------CCeEEE
Q 004969          458 QFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMN---SVLGLCWLKKYPSKLIAGSD---------NGSLKL  525 (721)
Q Consensus       458 ~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~---~V~sl~fsp~d~~~LaSgs~---------DGtVrI  525 (721)
                      .++|+| ++.+++ .+.||+|++||+.+++....+.  +|..   .+.+++|+ +++++|++++.         ++.|++
T Consensus        20 ~~~~s~-dg~~~~-~~~d~~i~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~S-pDg~~la~~~~~~~~~~~s~~~~i~~   94 (719)
T 1z68_A           20 FPNWIS-GQEYLH-QSADNNIVLYNIETGQSYTILS--NRTMKSVNASNYGLS-PDRQFVYLESDYSKLWRYSYTATYYI   94 (719)
T ss_dssp             CCEESS-SSEEEE-ECTTSCEEEEESSSCCEEEEEC--HHHHHTTTCSEEEEC-TTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             ccEECC-CCeEEE-EcCCCCEEEEEcCCCcEEEEEc--cccccccceeeEEEC-CCCCeEEEEecCceeEEeecceEEEE
Confidence            678999 776554 4579999999999998877665  3322   48899998 79999998876         799999


Q ss_pred             EEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCe---------
Q 004969          526 YDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHI---------  596 (721)
Q Consensus       526 WDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V---------  596 (721)
                      ||+.+++....        ..+  ...+..++|+|+|..++.+. ++.|++||+.+++..+....++...|         
T Consensus        95 ~d~~~g~~~~~--------~~l--~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~  163 (719)
T 1z68_A           95 YDLSNGEFVRG--------NEL--PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVY  163 (719)
T ss_dssp             EETTTTEECCS--------SCC--CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHH
T ss_pred             EECCCCccccc--------eec--CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEccccccee
Confidence            99988643100        000  13578899999999998875 78999999998876554322233322         


Q ss_pred             --------EEEEEcCCCCcEEEEEECCC----------------------------------cEEEEECCCCCce---eE
Q 004969          597 --------NVVKFSNHSPSIFATSSFDQ----------------------------------DVKLWDLRQKPIQ---PC  631 (721)
Q Consensus       597 --------~sI~fsPdg~~lLaSgs~Dg----------------------------------tIrIWDlrs~~~~---~~  631 (721)
                              .+++|+||| +.|++++.|.                                  .|++||+.+++..   .+
T Consensus       164 ~ee~~~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~  242 (719)
T 1z68_A          164 EEEMLATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEV  242 (719)
T ss_dssp             HHHTTCSSCCEEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEEC
T ss_pred             eeecccCcccEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEc
Confidence                    489999999 7888877552                                  7889999887532   11


Q ss_pred             ---EEecCCCCeE-EEEEecCCCEEEEEeCCC----cEEEEE----cCCCc----c----cccccCeE-----EEEECCC
Q 004969          632 ---YTASSSKGNV-MVCFSPDDHYLLGKGSGT----SMFVQS----LRGDP----F----RDFNMSIL-----AAYTRPS  686 (721)
Q Consensus       632 ---~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg----~I~VWD----l~g~~----l----~~~~~~V~-----~v~fsP~  686 (721)
                         ..+.++...+ .++||||++++++....+    .|++||    +.+..    +    ..+...+.     .+.|+|+
T Consensus       243 ~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spd  322 (719)
T 1z68_A          243 PVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYD  322 (719)
T ss_dssp             CCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTT
T ss_pred             cCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCC
Confidence               1122455555 899999988777754332    488899    65322    2    12334454     7889999


Q ss_pred             CC
Q 004969          687 SK  688 (721)
Q Consensus       687 ~~  688 (721)
                      ++
T Consensus       323 g~  324 (719)
T 1z68_A          323 AI  324 (719)
T ss_dssp             SS
T ss_pred             CC
Confidence            94

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.54  E-value=3.9e-12  Score=131.48  Aligned_cols=225  Identities=11%  Similarity=0.152  Sum_probs=161.6

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeec----CCCCCCeEEEEEeeCCCCEEEEEeC-CCeEEEEEcC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPS----FGAMNSVLGLCWLKKYPSKLIAGSD-NGSLKLYDIR  529 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~----~~H~~~V~sl~fsp~d~~~LaSgs~-DGtVrIWDi~  529 (721)
                      .|.+++++| ++.++++...++.|.+||.. ++.+..+..    .+|...+.++++.++++.++++... ++.|.+||..
T Consensus        31 ~p~~v~~~~-~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~  108 (286)
T 1q7f_A           31 EPSGVAVNA-QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY  108 (286)
T ss_dssp             CEEEEEECT-TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred             CCceEEECC-CCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCC
Confidence            599999999 88988888899999999987 666666643    1345678999995456666666543 8899999943


Q ss_pred             CCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcc-ccCCCeEEEEEcCCCCcE
Q 004969          530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD-MHKEHINVVKFSNHSPSI  608 (721)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~-~h~~~V~sI~fsPdg~~l  608 (721)
                      . +.. ...       ...+...+.++++++++..+++...++.|.+||.. ++.+..+.. .+...+..++++|+| ++
T Consensus       109 g-~~~-~~~-------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g-~l  177 (286)
T 1q7f_A          109 G-QFV-RKF-------GATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQ-EI  177 (286)
T ss_dssp             S-CEE-EEE-------CTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSS-EE
T ss_pred             C-cEE-EEe-------cCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCC-CE
Confidence            3 221 110       01122457899999988877666678899999964 666666642 245678999999998 78


Q ss_pred             EEEEECCCcEEEEECCCCCceeEEEecCC-CCeEEEEEecCCCEEEEEeCCC-cEEEEEcCCCcccccc-----cCeEEE
Q 004969          609 FATSSFDQDVKLWDLRQKPIQPCYTASSS-KGNVMVCFSPDDHYLLGKGSGT-SMFVQSLRGDPFRDFN-----MSILAA  681 (721)
Q Consensus       609 LaSgs~DgtIrIWDlrs~~~~~~~~~~~~-~~~vsl~fSpdg~~Lasgs~Dg-~I~VWDl~g~~l~~~~-----~~V~~v  681 (721)
                      +++...++.|++||.... ....+...++ ..+..++++++|+++++...++ .|.+|+..+..+..+.     ..+..+
T Consensus       178 ~v~~~~~~~i~~~~~~g~-~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i  256 (286)
T 1q7f_A          178 FISDNRAHCVKVFNYEGQ-YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDV  256 (286)
T ss_dssp             EEEEGGGTEEEEEETTCC-EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEE
T ss_pred             EEEECCCCEEEEEcCCCC-EEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeE
Confidence            888888999999998543 2222222222 3455899999999988888776 9999998876544331     237789


Q ss_pred             EECCCCCcccccccEEEEe
Q 004969          682 YTRPSSKSEIVKVNLLAST  700 (721)
Q Consensus       682 ~fsP~~~~~~v~v~lLASg  700 (721)
                      +++|++       .++++.
T Consensus       257 ~~~~~g-------~l~vs~  268 (286)
T 1q7f_A          257 ALMDDG-------SVVLAS  268 (286)
T ss_dssp             EEETTT-------EEEEEE
T ss_pred             EECCCC-------cEEEEC
Confidence            999999       788774

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.53  E-value=3e-13  Score=145.91  Aligned_cols=231  Identities=9%  Similarity=0.012  Sum_probs=152.1

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECC-CCeEEEEeecCCCCCCeEEEEEeeCCCCE--EEEEe-------------
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHE-NENIVSYIPSFGAMNSVLGLCWLKKYPSK--LIAGS-------------  518 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~-tg~~i~~l~~~~H~~~V~sl~fsp~d~~~--LaSgs-------------  518 (721)
                      .+..++|+| +++++++++.+ .|.+|++. +|+.........+ +.+.+++|+ +++++  +++++             
T Consensus        41 ~~~~~a~sp-dg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~s-pdg~~l~~~~~~~~~~~~~~~~~~~  116 (365)
T 1jof_A           41 PISWMTFDH-ERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRANDAD-TNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             CCSEEEECT-TSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGGCTT-SCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCcEEEECC-CCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccEEEC-CCCCEEEEEEecCCcceeccceeec
Confidence            377899999 89999988888 99999997 7876544332111 234557887 67773  45553             


Q ss_pred             CCCeEEEEEcCC-CCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-CCcEEEEECC-CCcEE--EEEcc-cc
Q 004969          519 DNGSLKLYDIRH-MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-SKNIALYDIN-SGRRL--QVFAD-MH  592 (721)
Q Consensus       519 ~DGtVrIWDi~~-~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-Dg~IrlWDl~-s~~~v--~~l~~-~h  592 (721)
                      .+|++.+|++.. +.. ....    ......+...+.+++|+|++..++++.. ++.|++||+. +++..  ..+.. .|
T Consensus       117 ~~g~v~v~~~~~~g~~-~~~~----~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~  191 (365)
T 1jof_A          117 FAGYGNVFSVSETGKL-EKNV----QNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDP  191 (365)
T ss_dssp             SCCEEEEEEECTTCCE-EEEE----EEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSST
T ss_pred             CCceEEEEccCCCCcC-cceE----eeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCC
Confidence            689999999974 322 1100    0001123456899999999998887764 6899999998 77653  33331 14


Q ss_pred             CCCeEEEEEcCCCCcEEEEEE-CCCcEEEEECC--CCCcee----EEEecC----CC-------CeEEEE-EecCCCEEE
Q 004969          593 KEHINVVKFSNHSPSIFATSS-FDQDVKLWDLR--QKPIQP----CYTASS----SK-------GNVMVC-FSPDDHYLL  653 (721)
Q Consensus       593 ~~~V~sI~fsPdg~~lLaSgs-~DgtIrIWDlr--s~~~~~----~~~~~~----~~-------~~vsl~-fSpdg~~La  653 (721)
                      ...+..++|+|+| +++++++ .++.|.+|++.  +++...    +..+..    +.       ....++ |+|||++|+
T Consensus       192 g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~  270 (365)
T 1jof_A          192 GDHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMF  270 (365)
T ss_dssp             TCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEE
T ss_pred             CCCCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEE
Confidence            5679999999999 5666665 47899999875  454321    112221    12       234899 999999988


Q ss_pred             EEeCC-C-----cEEEEEcC-CCcccc-------cccCeEEEEECC---CCCcccccccEEEEecC
Q 004969          654 GKGSG-T-----SMFVQSLR-GDPFRD-------FNMSILAAYTRP---SSKSEIVKVNLLASTDH  702 (721)
Q Consensus       654 sgs~D-g-----~I~VWDl~-g~~l~~-------~~~~V~~v~fsP---~~~~~~v~v~lLASgs~  702 (721)
                      +++.+ +     .|.+|++. ...+..       +...+..++|+|   ++       ..|++++.
T Consensus       271 v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg-------~~l~v~~~  329 (365)
T 1jof_A          271 ASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD-------EWMAITDD  329 (365)
T ss_dssp             EEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT-------TEEEEECS
T ss_pred             EECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCC-------CEEEEEEc
Confidence            77543 2     89999985 222221       222455678888   67       56666554

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.52  E-value=3e-13  Score=166.30  Aligned_cols=211  Identities=12%  Similarity=0.155  Sum_probs=163.2

Q ss_pred             CeEEEEEe-CCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCC-CeEEEEEeeCCCCEEEEEeCCCeEE-EEEcCCC
Q 004969          455 RPRQFEYH-PSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMN-SVLGLCWLKKYPSKLIAGSDNGSLK-LYDIRHM  531 (721)
Q Consensus       455 ~V~~lafs-P~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~-~V~sl~fsp~d~~~LaSgs~DGtVr-IWDi~~~  531 (721)
                      .+.+++|+ | +++++++++ ++.|.+|+..++.... +.  .|.. .+..++|+  +++.+++++.++.+. +||+.++
T Consensus       297 ~v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~~~~~-~~--~~~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~~  369 (1045)
T 1k32_A          297 SKFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGTYVLK-VP--EPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTG  369 (1045)
T ss_dssp             GGGEEEEEEC-GGGCEEEEE-TTEEEEECTTSSBEEE-CS--CCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTC
T ss_pred             ccceeeecCC-CCCEEEEEE-cCEEEEEcCCCCceEE-cc--CCCcceEEeeeEc--CCCeEEEEECCCceEEEEECCCC
Confidence            47899999 9 899888888 8899999998877543 33  5666 89999997  788899998888888 9998875


Q ss_pred             CCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEE
Q 004969          532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFAT  611 (721)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaS  611 (721)
                      ...         ... .+...+..++|+|++..+++++.++.|++||+.+++....+.+ |...+.+++|+|+| +++++
T Consensus       370 ~~~---------~l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~-~~~~v~~~~~SpDG-~~la~  437 (1045)
T 1k32_A          370 KAE---------KFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS-REAMITDFTISDNS-RFIAY  437 (1045)
T ss_dssp             CEE---------ECC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-SSSCCCCEEECTTS-CEEEE
T ss_pred             Cce---------Eec-CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccC-CCCCccceEECCCC-CeEEE
Confidence            421         111 3345689999999999999999999999999999998877765 88999999999999 67777


Q ss_pred             EECCC----------cEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCcc-cccccCeE
Q 004969          612 SSFDQ----------DVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDPF-RDFNMSIL  679 (721)
Q Consensus       612 gs~Dg----------tIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l-~~~~~~V~  679 (721)
                      ++.++          .|++||+.+++   ...+..+.... .++|+|||++|+.++.++...+|+.....+ ......+.
T Consensus       438 ~~~~~~~~~~~~~~~~i~l~d~~~g~---~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~  514 (1045)
T 1k32_A          438 GFPLKHGETDGYVMQAIHVYDMEGRK---IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPF  514 (1045)
T ss_dssp             EEEECSSTTCSCCEEEEEEEETTTTE---EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEE
T ss_pred             EecCccccccCCCCCeEEEEECCCCc---EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeE
Confidence            76544          89999999874   34455555544 899999999999999999888998652211 11123444


Q ss_pred             EEEECCCC
Q 004969          680 AAYTRPSS  687 (721)
Q Consensus       680 ~v~fsP~~  687 (721)
                      .+.++++.
T Consensus       515 ~~~~~~~~  522 (1045)
T 1k32_A          515 VIPLIPGS  522 (1045)
T ss_dssp             EEESSTTC
T ss_pred             EEEeCCCC
Confidence            55555444

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.52  E-value=3.1e-13  Score=160.11  Aligned_cols=215  Identities=9%  Similarity=0.009  Sum_probs=148.4

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCC-----CeEEEEEeeCCCCEEEEEeCC---------C
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMN-----SVLGLCWLKKYPSKLIAGSDN---------G  521 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~-----~V~sl~fsp~d~~~LaSgs~D---------G  521 (721)
                      ..++.|+| ++.+++++  ||+|++||+.+|+....+.  +|..     ...+++|+ +++++|+.++.+         +
T Consensus        19 ~~~~~w~~-dg~~~~~~--~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~S-pdg~~l~~~~~~~~~~r~~~~~   92 (740)
T 4a5s_A           19 LYSLRWIS-DHEYLYKQ--ENNILVFNAEYGNSSVFLE--NSTFDEFGHSINDYSIS-PDGQFILLEYNYVKQWRHSYTA   92 (740)
T ss_dssp             CCCEEECS-SSEEEEEE--TTEEEEEETTTCCEEEEEC--TTTTTTCCSCCCEEEEC-TTSSEEEEEEEEEECSSSCEEE
T ss_pred             ccccEECC-CCcEEEEc--CCcEEEEECCCCceEEEEe--chhhhhhcccccceEEC-CCCCEEEEEECCeeeEEEccce
Confidence            45789999 88888886  9999999999999877766  4432     23457888 789999998886         5


Q ss_pred             eEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCe-----
Q 004969          522 SLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHI-----  596 (721)
Q Consensus       522 tVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V-----  596 (721)
                      .+.+||+.+++..  .+.        .+...+...+|+|+|..++.+. ++.|++||+.+++..+....++...+     
T Consensus        93 ~~~~~d~~~~~~~--~l~--------~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~  161 (740)
T 4a5s_A           93 SYDIYDLNKRQLI--TEE--------RIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGIT  161 (740)
T ss_dssp             EEEEEETTTTEEC--CSS--------CCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBC
T ss_pred             EEEEEECCCCcEE--Ecc--------cCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcc
Confidence            6679999986531  111        1334688999999999998874 68999999998875543222233222     


Q ss_pred             ------------EEEEEcCCCCcEEEEEECCC------------------------------------cEEEEECCC---
Q 004969          597 ------------NVVKFSNHSPSIFATSSFDQ------------------------------------DVKLWDLRQ---  625 (721)
Q Consensus       597 ------------~sI~fsPdg~~lLaSgs~Dg------------------------------------tIrIWDlrs---  625 (721)
                                  ..+.|+||| +.||.++.|.                                    +|++||+.+   
T Consensus       162 ~~v~~ee~~~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~  240 (740)
T 4a5s_A          162 DWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSS  240 (740)
T ss_dssp             CHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCS
T ss_pred             cccccchhcCCCcceEECCCC-CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCC
Confidence                        348999999 6777765332                                    478899887   


Q ss_pred             CCceeEEEec------CCCCeE-EEEEecCCCEEEEEeC----CCcEEEEEcCCCc-------cc-----ccccCe----
Q 004969          626 KPIQPCYTAS------SSKGNV-MVCFSPDDHYLLGKGS----GTSMFVQSLRGDP-------FR-----DFNMSI----  678 (721)
Q Consensus       626 ~~~~~~~~~~------~~~~~v-sl~fSpdg~~Lasgs~----Dg~I~VWDl~g~~-------l~-----~~~~~V----  678 (721)
                      +.......+.      ++...+ .++|+|||+.++....    +..|++||+.+..       ..     .+...+    
T Consensus       241 ~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~  320 (740)
T 4a5s_A          241 VTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFR  320 (740)
T ss_dssp             SSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSS
T ss_pred             CCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCc
Confidence            6321222332      244555 8999999997765533    2368999987432       22     233333    


Q ss_pred             -EEEEECCCCC
Q 004969          679 -LAAYTRPSSK  688 (721)
Q Consensus       679 -~~v~fsP~~~  688 (721)
                       ....|+|+++
T Consensus       321 ~~~p~fspDG~  331 (740)
T 4a5s_A          321 PSEPHFTLDGN  331 (740)
T ss_dssp             CCCCEECTTSS
T ss_pred             CCCceEcCCCC
Confidence             3678999994

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.52  E-value=3.9e-12  Score=135.40  Aligned_cols=237  Identities=12%  Similarity=0.116  Sum_probs=166.2

Q ss_pred             CeEEEEEeCCCCCEEEEEECC------------------------CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLD------------------------GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKY  510 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~D------------------------G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d  510 (721)
                      .|.+++++| +++++++...+                        ++|.+||..+|+.+..+.. ++.....++++. ++
T Consensus        25 ~v~~va~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-~~~~~p~gia~d-~~  101 (329)
T 3fvz_A           25 QVSGVALDS-KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGK-NLFYLPHGLSID-TD  101 (329)
T ss_dssp             CEEEEEECT-TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECT-TTCSSEEEEEEC-TT
T ss_pred             CceEEEECC-CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCC-CccCCceEEEEC-CC
Confidence            589999999 89999888877                        4799999999988766542 455688999998 68


Q ss_pred             CCEEEEEeCCCeEEEEEcCCCCCcccccccCcc-eeEeccCCCeEEEEEec-CCCEEEEEe-CCCcEEEEECCCCcEEEE
Q 004969          511 PSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAG-TVTFDEFDQLTSVHVNS-MDELFLASG-YSKNIALYDINSGRRLQV  587 (721)
Q Consensus       511 ~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~-~~~~~~~~~V~sv~~sp-~~~~lls~g-~Dg~IrlWDl~s~~~v~~  587 (721)
                      ++++++...++.|++||.......+..+..... -....+......++++| ++..+++.+ .++.|++|| .+++.+..
T Consensus       102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~  180 (329)
T 3fvz_A          102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQ  180 (329)
T ss_dssp             SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEE
T ss_pred             CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEE
Confidence            888888888999999998764211111110000 00011223578999999 566666665 589999999 56777777


Q ss_pred             Ecc---------ccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCe-EEEEEecCCCEEEE---
Q 004969          588 FAD---------MHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGN-VMVCFSPDDHYLLG---  654 (721)
Q Consensus       588 l~~---------~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~-vsl~fSpdg~~Las---  654 (721)
                      +..         ++-.....++++|+++.++++...++.|++||..+++.........+... ..++|+| +..+++   
T Consensus       181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~  259 (329)
T 3fvz_A          181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGK  259 (329)
T ss_dssp             ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECC
T ss_pred             eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCC
Confidence            752         12234899999999448888888999999999997765444433333333 3889999 433333   


Q ss_pred             ----EeCCCcEEEEEcC-CCcccc------cccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          655 ----KGSGTSMFVQSLR-GDPFRD------FNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       655 ----gs~Dg~I~VWDl~-g~~l~~------~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                          ...+..|++|+.. +..+..      +...+..++++|++       .++++....
T Consensus       260 ~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG-------~lyvad~~~  312 (329)
T 3fvz_A          260 PYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDG-------TVYIGDAHT  312 (329)
T ss_dssp             CCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTS-------EEEEEESSS
T ss_pred             EEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCC-------CEEEEECCC
Confidence                3334589999976 443332      23468899999999       788877665

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.50  E-value=5.3e-13  Score=143.52  Aligned_cols=234  Identities=10%  Similarity=0.034  Sum_probs=154.4

Q ss_pred             EEEEEeCCCCCEEEEEEC-CC--eEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969          457 RQFEYHPSISCLMVFGTL-DG--EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       457 ~~lafsP~dg~~LasGs~-DG--~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~  533 (721)
                      ...+|+| |+++|+.++. +|  .|.+||+.+++......  ++...+.++.|+ ++++.|+.++.++.|.+||+.+++.
T Consensus        39 ~~~~~Sp-Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~--~~~~~~~~~~~s-pdg~~l~~~~~~~~l~~~d~~~g~~  114 (388)
T 3pe7_A           39 YQKCFTR-DGSKLLFGGAFDGPWNYYLLDLNTQVATQLTE--GRGDNTFGGFLS-PDDDALFYVKDGRNLMRVDLATLEE  114 (388)
T ss_dssp             TSCCBCT-TSCEEEEEECTTSSCEEEEEETTTCEEEECCC--SSCBCSSSCEEC-TTSSEEEEEETTTEEEEEETTTCCE
T ss_pred             cCccCCC-CCCEEEEEEcCCCCceEEEEeCCCCceEEeee--CCCCCccceEEc-CCCCEEEEEeCCCeEEEEECCCCcc
Confidence            3467999 9999998887 67  48889999888766554  555555567898 7899999999999999999988654


Q ss_pred             cccc-cc-------------------------------------------cC-ccee-----------EeccCCCeEEEE
Q 004969          534 SIRG-MH-------------------------------------------YG-AGTV-----------TFDEFDQLTSVH  557 (721)
Q Consensus       534 ~~~~-~~-------------------------------------------~~-~~~~-----------~~~~~~~V~sv~  557 (721)
                      .... ..                                           .. ....           ...+...+..+.
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~  194 (388)
T 3pe7_A          115 NVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPI  194 (388)
T ss_dssp             EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEE
T ss_pred             eeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccE
Confidence            2100 00                                           00 0011           112334578899


Q ss_pred             Eec-CCCEEEEEeCC------CcEEEEECCCCcEEEEEccccC--CCeEEEEEcCCCCcEEEEEECCC----cEEEEECC
Q 004969          558 VNS-MDELFLASGYS------KNIALYDINSGRRLQVFADMHK--EHINVVKFSNHSPSIFATSSFDQ----DVKLWDLR  624 (721)
Q Consensus       558 ~sp-~~~~lls~g~D------g~IrlWDl~s~~~v~~l~~~h~--~~V~sI~fsPdg~~lLaSgs~Dg----tIrIWDlr  624 (721)
                      |+| ++..++.+..+      ..|.++|...++. ..+.. +.  ..+..++|+|+|..+++++..++    .|++||+.
T Consensus       195 ~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~  272 (388)
T 3pe7_A          195 YRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKT-HAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPE  272 (388)
T ss_dssp             EETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCC-CCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTT
T ss_pred             ECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeee-CCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecC
Confidence            999 88888877753      3788888876554 33433 33  35788999999944434443322    39999999


Q ss_pred             CCCceeEEEecCCCCeE----EEEEecCCCEEEEE---------eCCCcEEEEEcCCCccc---cccc-----------C
Q 004969          625 QKPIQPCYTASSSKGNV----MVCFSPDDHYLLGK---------GSGTSMFVQSLRGDPFR---DFNM-----------S  677 (721)
Q Consensus       625 s~~~~~~~~~~~~~~~v----sl~fSpdg~~Lasg---------s~Dg~I~VWDl~g~~l~---~~~~-----------~  677 (721)
                      +++...+....++....    ...|+|||++|+..         ..+..|++||+.+....   .+..           .
T Consensus       273 ~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~  352 (388)
T 3pe7_A          273 TLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVT  352 (388)
T ss_dssp             TCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTT
T ss_pred             CCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccC
Confidence            98765555544311111    13799999988854         44668999999865433   2222           3


Q ss_pred             eEEEEECCCCCcccccccEEEEecCC
Q 004969          678 ILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       678 V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      +..++|+|++       ..|+..+..
T Consensus       353 ~~~~~~spDg-------~~l~~~s~~  371 (388)
T 3pe7_A          353 HPHPSFTPDD-------KQILFTSDV  371 (388)
T ss_dssp             CCCCEECTTS-------SEEEEEECT
T ss_pred             CCCccCCCCC-------CEEEEEecC
Confidence            6778999999       666666544

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.49  E-value=7.1e-12  Score=134.02  Aligned_cols=207  Identities=11%  Similarity=0.087  Sum_probs=135.9

Q ss_pred             CeEEEEEeCCCCCEEEEEE-CCCeEEEEECCCCeEEE----EeecCC--------CCCCeEEEEEeeCCCCEEEEEe-CC
Q 004969          455 RPRQFEYHPSISCLMVFGT-LDGEIVVVNHENENIVS----YIPSFG--------AMNSVLGLCWLKKYPSKLIAGS-DN  520 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs-~DG~I~IWdl~tg~~i~----~l~~~~--------H~~~V~sl~fsp~d~~~LaSgs-~D  520 (721)
                      .+..+++   +++++++++ .++.|.+|++.....+.    .....+        +...+.+++|+ ++++++++++ .+
T Consensus       101 ~p~~~~~---dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s-pdg~~l~~~~~~~  176 (361)
T 3scy_A          101 DPCYLTT---NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRIT-PDGKYLLADDLGT  176 (361)
T ss_dssp             CEEEEEE---CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEEC-TTSSEEEEEETTT
T ss_pred             CcEEEEE---CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEEC-CCCCEEEEEeCCC
Confidence            3666777   556666665 68999999997543221    111111        22346889998 6787665544 58


Q ss_pred             CeEEEEEcCCCCC----c-ccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcE--EEEEcc--
Q 004969          521 GSLKLYDIRHMPP----S-IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRR--LQVFAD--  590 (721)
Q Consensus       521 GtVrIWDi~~~~~----~-~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~--v~~l~~--  590 (721)
                      +.|.+|++.....    . +... +...............++|+|++..+++++ .++.|.+||+.+++.  +..+..  
T Consensus       177 ~~v~v~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~  255 (361)
T 3scy_A          177 DQIHKFNINPNANADNKEKFLTK-GTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADT  255 (361)
T ss_dssp             TEEEEEEECTTCCTTTCCCCEEE-EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCS
T ss_pred             CEEEEEEEcCCCCcccccceeec-ccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCC
Confidence            9999999886432    0 1000 000122233344578999999999888887 589999999997754  233321  


Q ss_pred             ccCCCeEEEEEcCCCCcEEEEEE-C-CCcEEEEECC--CCCceeEEEecCCCCeEEEEEecCCCEEEEEe-CCCcEEEEE
Q 004969          591 MHKEHINVVKFSNHSPSIFATSS-F-DQDVKLWDLR--QKPIQPCYTASSSKGNVMVCFSPDDHYLLGKG-SGTSMFVQS  665 (721)
Q Consensus       591 ~h~~~V~sI~fsPdg~~lLaSgs-~-DgtIrIWDlr--s~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs-~Dg~I~VWD  665 (721)
                      .+...+..++|+|+| ++++++. . ++.|.+|++.  ++....+........+..++|+|+|++|++++ .++.|.+|+
T Consensus       256 ~~~~~~~~i~~spdg-~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~  334 (361)
T 3scy_A          256 VNAQGSGDIHLSPDG-KYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFE  334 (361)
T ss_dssp             SCCCCEEEEEECTTS-SEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred             CCCCCcccEEECCCC-CEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEE
Confidence            134557899999999 5665554 4 5899999996  45444444444433344899999999998887 578999976


Q ss_pred             cC
Q 004969          666 LR  667 (721)
Q Consensus       666 l~  667 (721)
                      +.
T Consensus       335 ~d  336 (361)
T 3scy_A          335 RD  336 (361)
T ss_dssp             EC
T ss_pred             EE
Confidence            65

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.48  E-value=1.6e-13  Score=161.05  Aligned_cols=223  Identities=10%  Similarity=0.038  Sum_probs=147.3

Q ss_pred             eEEEEEeCCCCCEEEEEEC---------CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEE
Q 004969          456 PRQFEYHPSISCLMVFGTL---------DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLY  526 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~---------DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIW  526 (721)
                      +.+++||| ||++|++++.         +++|++||+.+++.+...+   ....+..++|+ ++++.|+.++ ++.|++|
T Consensus        62 ~~~~~~Sp-Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~---l~~~~~~~~~S-PDG~~la~~~-~~~i~~~  135 (719)
T 1z68_A           62 ASNYGLSP-DRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE---LPRPIQYLCWS-PVGSKLAYVY-QNNIYLK  135 (719)
T ss_dssp             CSEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC---CCSSBCCEEEC-SSTTCEEEEE-TTEEEEE
T ss_pred             eeeEEECC-CCCeEEEEecCceeEEeecceEEEEEECCCCcccccee---cCcccccceEC-CCCCEEEEEE-CCeEEEE
Confidence            78999999 9999999876         7999999999887631111   12468889998 7888888875 7899999


Q ss_pred             EcCCCCCcccccccCcceeEeccC---------CCeEEEEEecCCCEEEEEeCCC-------------------------
Q 004969          527 DIRHMPPSIRGMHYGAGTVTFDEF---------DQLTSVHVNSMDELFLASGYSK-------------------------  572 (721)
Q Consensus       527 Di~~~~~~~~~~~~~~~~~~~~~~---------~~V~sv~~sp~~~~lls~g~Dg-------------------------  572 (721)
                      |+.+++.......++...+...+.         ....+++|+|+|..|++++.|.                         
T Consensus       136 ~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp  215 (719)
T 1z68_A          136 QRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYP  215 (719)
T ss_dssp             SSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECC
T ss_pred             eCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCC
Confidence            998876532111121111111111         1225899999999999987542                         


Q ss_pred             ---------cEEEEECCCCcEE--EE------EccccCCCeEEEEEcCCCCcEEEEEECC----CcEEEEE----CCCCC
Q 004969          573 ---------NIALYDINSGRRL--QV------FADMHKEHINVVKFSNHSPSIFATSSFD----QDVKLWD----LRQKP  627 (721)
Q Consensus       573 ---------~IrlWDl~s~~~v--~~------l~~~h~~~V~sI~fsPdg~~lLaSgs~D----gtIrIWD----lrs~~  627 (721)
                               .|++||+.+++..  ..      +.+ |...+..++|+||+ .++++....    ..|.+||    ..+++
T Consensus       216 ~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d~~~~~~~g~  293 (719)
T 1z68_A          216 KAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIAS-SDYYFSWLTWVTDE-RVCLQWLKRVQNVSVLSICDFREDWQTWD  293 (719)
T ss_dssp             BTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHT-SCEEEEEEEESSSS-EEEEEEEESSTTEEEEEEEEECSSSSSEE
T ss_pred             CCCCCCCeeEEEEEECCCCCccceeEccCCccCCC-CcceEEEeEEeCCC-eEEEEEeccccCeEEEEEEcccCCCCCCc
Confidence                     7889999987752  11      223 77889999999997 777775432    2488899    77765


Q ss_pred             ceeEEE--ecCCCCeE------EEEEecCCCEEEE--EeCCC--cEEEEEcCCCccc---ccccCeEEEEECCCC
Q 004969          628 IQPCYT--ASSSKGNV------MVCFSPDDHYLLG--KGSGT--SMFVQSLRGDPFR---DFNMSILAAYTRPSS  687 (721)
Q Consensus       628 ~~~~~~--~~~~~~~v------sl~fSpdg~~Las--gs~Dg--~I~VWDl~g~~l~---~~~~~V~~v~fsP~~  687 (721)
                      ...+..  ..++.+.+      .+.|+|||+.++.  +..+|  .|++||+.+...+   .....+..+.+. ++
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~  367 (719)
T 1z68_A          294 CPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQ  367 (719)
T ss_dssp             CCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CS
T ss_pred             eEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eC
Confidence            443321  02233322      5789999996554  44555  5677777654332   223356665555 54

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.44  E-value=4.8e-11  Score=125.84  Aligned_cols=220  Identities=10%  Similarity=0.101  Sum_probs=153.9

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC----CeEEEEEcCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN----GSLKLYDIRH  530 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D----GtVrIWDi~~  530 (721)
                      .+.+++|+| ++++++++..++.|.+||..+++......  .+...+.+++|. +++++++++..+    +.|.+||..+
T Consensus        46 ~~~~~~~~~-~g~l~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~i~~~-~dg~l~v~~~~~~~~~~~i~~~d~~~  121 (333)
T 2dg1_A           46 QLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFV--SHKANPAAIKIH-KDGRLFVCYLGDFKSTGGIFAATENG  121 (333)
T ss_dssp             CEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEE--CSSSSEEEEEEC-TTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred             cccCcEECC-CCCEEEEECCCCEEEEEeCCCCcEEEEee--CCCCCcceEEEC-CCCcEEEEeCCCCCCCceEEEEeCCC
Confidence            378899999 88888888899999999999887765543  345789999998 677877777666    6899999887


Q ss_pred             CCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC------CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCC
Q 004969          531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY------SKNIALYDINSGRRLQVFADMHKEHINVVKFSNH  604 (721)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~------Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPd  604 (721)
                      +..... ...      ......+.+++++|++..+++...      .+.|..||..+++......  +...+..++|+|+
T Consensus       122 ~~~~~~-~~~------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~i~~~~d  192 (333)
T 2dg1_A          122 DNLQDI-IED------LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ--NISVANGIALSTD  192 (333)
T ss_dssp             CSCEEE-ECS------SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE--EESSEEEEEECTT
T ss_pred             CEEEEE-Ecc------CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec--CCCcccceEECCC
Confidence            553200 000      012245789999998877766543      2556777766555443322  3456889999999


Q ss_pred             CCcEEEEEECCCcEEEEECCC-CCceeE------EEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCccccccc-
Q 004969          605 SPSIFATSSFDQDVKLWDLRQ-KPIQPC------YTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDFNM-  676 (721)
Q Consensus       605 g~~lLaSgs~DgtIrIWDlrs-~~~~~~------~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~~~~~-  676 (721)
                      +..++++.+.++.|.+||+.+ +.....      ....++..+..++++++|+++++...++.|.+||..+..+..+.. 
T Consensus       193 g~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~~~~~~~~~  272 (333)
T 2dg1_A          193 EKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIP  272 (333)
T ss_dssp             SSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEEEECT
T ss_pred             CCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCCCCEEEEEEcC
Confidence            843556666788999999964 222111      122222233479999999988888888999999987665443321 


Q ss_pred             --------CeEEEEECCCC
Q 004969          677 --------SILAAYTRPSS  687 (721)
Q Consensus       677 --------~V~~v~fsP~~  687 (721)
                              .+..++|+|++
T Consensus       273 ~~~~g~~~~~~~~~~~~dg  291 (333)
T 2dg1_A          273 GRDEGHMLRSTHPQFIPGT  291 (333)
T ss_dssp             TGGGTCSCBCCEEEECTTS
T ss_pred             CCccccccCcceEEECCCC
Confidence                    47889999987

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.42  E-value=3.8e-12  Score=145.79  Aligned_cols=185  Identities=7%  Similarity=-0.017  Sum_probs=138.1

Q ss_pred             eEEEEEeCCCC-CEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC----CeEEEEEcCC
Q 004969          456 PRQFEYHPSIS-CLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN----GSLKLYDIRH  530 (721)
Q Consensus       456 V~~lafsP~dg-~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D----GtVrIWDi~~  530 (721)
                      +...+|+| ++ ..+++.+.++.+.+||+.+++.......  + .  .+++|+ ++++++++++.|    +.|.+||+.+
T Consensus       112 ~~~~~~s~-dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~--~-~--~~~~~s-pDG~~la~~~~~~~~~~~i~~~d~~~  184 (582)
T 3o4h_A          112 MRILSGVD-TGEAVVFTGATEDRVALYALDGGGLRELARL--P-G--FGFVSD-IRGDLIAGLGFFGGGRVSLFTSNLSS  184 (582)
T ss_dssp             BEEEEEEE-CSSCEEEEEECSSCEEEEEEETTEEEEEEEE--S-S--CEEEEE-EETTEEEEEEEEETTEEEEEEEETTT
T ss_pred             ceeeeeCC-CCCeEEEEecCCCCceEEEccCCcEEEeecC--C-C--ceEEEC-CCCCEEEEEEEcCCCCeEEEEEcCCC
Confidence            34568888 54 3444444455566999998877655542  2 2  788998 689999988877    8899999988


Q ss_pred             CCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCC--cEEEEECCCCcEEEEEccccCCCeEEEE--------
Q 004969          531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSK--NIALYDINSGRRLQVFADMHKEHINVVK--------  600 (721)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg--~IrlWDl~s~~~v~~l~~~h~~~V~sI~--------  600 (721)
                      ++..          ....+...+..++|+|+|..++++..++  .|++||+.+++.. .+.+ |...+..++        
T Consensus       185 g~~~----------~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~  252 (582)
T 3o4h_A          185 GGLR----------VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLEL-PSKDFSSYRPTAITWLG  252 (582)
T ss_dssp             CCCE----------EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCC-SCSHHHHHCCSEEEEEE
T ss_pred             CCce----------EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccC-CCcChhhhhhcccccee
Confidence            6542          1122345578999999999999777788  8999999998877 5554 777777777        


Q ss_pred             EcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCC---cEEEEEcCC
Q 004969          601 FSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGT---SMFVQSLRG  668 (721)
Q Consensus       601 fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg---~I~VWDl~g  668 (721)
                      |+|+| .++++++.|+++++|++  ++...     ...+.+ +++|+ +|+++++++.+.   .+++|+..+
T Consensus       253 ~spdg-~~~~~~~~~g~~~l~~~--g~~~~-----~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          253 YLPDG-RLAVVARREGRSAVFID--GERVE-----APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE  315 (582)
T ss_dssp             ECTTS-CEEEEEEETTEEEEEET--TEEEC-----CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred             EcCCC-cEEEEEEcCCcEEEEEE--CCeec-----cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence            99999 89999999999999999  43322     122444 89999 999999888775   467777654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.41  E-value=8.4e-12  Score=134.57  Aligned_cols=205  Identities=13%  Similarity=0.102  Sum_probs=137.5

Q ss_pred             eEEEEEeCCCCCE--EEEEE-------------CCCeEEEEECC-CCeEEEEeec--CCCCCCeEEEEEeeCCCCEEEEE
Q 004969          456 PRQFEYHPSISCL--MVFGT-------------LDGEIVVVNHE-NENIVSYIPS--FGAMNSVLGLCWLKKYPSKLIAG  517 (721)
Q Consensus       456 V~~lafsP~dg~~--LasGs-------------~DG~I~IWdl~-tg~~i~~l~~--~~H~~~V~sl~fsp~d~~~LaSg  517 (721)
                      +..++|+| ++++  ++++.             .+|++.+|++. +|+....+..  ..+...+.+++|+ +++++++++
T Consensus        85 ~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s-pdG~~l~~~  162 (365)
T 1jof_A           85 PRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFD-PTETYLYSA  162 (365)
T ss_dssp             GGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEEC-TTSSEEEEE
T ss_pred             CccEEECC-CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEEC-CCCCEEEEE
Confidence            44578899 8884  44542             68999999997 4665544432  1245679999998 688888776


Q ss_pred             e-CCCeEEEEEcC-CCCCcccccccCcceeEec-cCCCeEEEEEecCCCEEEEEeC-CCcEEEEECC--CCcEE---EEE
Q 004969          518 S-DNGSLKLYDIR-HMPPSIRGMHYGAGTVTFD-EFDQLTSVHVNSMDELFLASGY-SKNIALYDIN--SGRRL---QVF  588 (721)
Q Consensus       518 s-~DGtVrIWDi~-~~~~~~~~~~~~~~~~~~~-~~~~V~sv~~sp~~~~lls~g~-Dg~IrlWDl~--s~~~v---~~l  588 (721)
                      . .++.|++||+. +++....      ...... +...+..++|+|++..+++++. ++.|.+|++.  +++..   ..+
T Consensus       163 ~~~~~~v~~~~~~~~g~~~~~------~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~  236 (365)
T 1jof_A          163 DLTANKLWTHRKLASGEVELV------GSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSF  236 (365)
T ss_dssp             ETTTTEEEEEEECTTSCEEEE------EEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred             cCCCCEEEEEEECCCCCEEEe------eeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceE
Confidence            5 46899999998 5442110      011111 2345789999999999988875 7899999865  56543   222


Q ss_pred             cc------ccCC------CeEEEE-EcCCCCcEEEEEEC-CC-----cEEEEECC-CCCceeEEE-ecCC-CCeEEEEEe
Q 004969          589 AD------MHKE------HINVVK-FSNHSPSIFATSSF-DQ-----DVKLWDLR-QKPIQPCYT-ASSS-KGNVMVCFS  646 (721)
Q Consensus       589 ~~------~h~~------~V~sI~-fsPdg~~lLaSgs~-Dg-----tIrIWDlr-s~~~~~~~~-~~~~-~~~vsl~fS  646 (721)
                      ..      +|..      .+..++ |+|+| ++++++.. +.     +|++|++. +++...+.. ...+ .....++|+
T Consensus       237 ~~~~~~~~g~~~~~~~~~~~~~i~~~spdG-~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~s  315 (365)
T 1jof_A          237 PLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVS  315 (365)
T ss_dssp             ESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEE
T ss_pred             EcCCCCcCCcccccccccccccEEEECCCC-CEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceec
Confidence            21      0222      588999 99999 56655543 33     89999996 554433221 2222 223368999


Q ss_pred             c---CCCEEEEEeCC-CcEEEEEcCCC
Q 004969          647 P---DDHYLLGKGSG-TSMFVQSLRGD  669 (721)
Q Consensus       647 p---dg~~Lasgs~D-g~I~VWDl~g~  669 (721)
                      |   ||++|++++.+ +.|.+|++...
T Consensus       316 p~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          316 PCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             ECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            9   89999998864 89999999755

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.40  E-value=4.6e-11  Score=124.29  Aligned_cols=216  Identities=10%  Similarity=0.035  Sum_probs=149.6

Q ss_pred             CeEEEEEeCCCCC-EEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969          455 RPRQFEYHPSISC-LMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       455 ~V~~lafsP~dg~-~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~  533 (721)
                      .+.+++|+| +++ +++++..++.|..|+..++  ...+.  .+...+.++++. +++.++++...++.|.+||..+++.
T Consensus        29 ~~eg~~~d~-~g~~l~~~~~~~~~i~~~~~~~~--~~~~~--~~~~~~~~l~~~-~dg~l~v~~~~~~~i~~~d~~~g~~  102 (296)
T 3e5z_A           29 WTEGPVYVP-ARSAVIFSDVRQNRTWAWSDDGQ--LSPEM--HPSHHQNGHCLN-KQGHLIACSHGLRRLERQREPGGEW  102 (296)
T ss_dssp             SEEEEEEEG-GGTEEEEEEGGGTEEEEEETTSC--EEEEE--SSCSSEEEEEEC-TTCCEEEEETTTTEEEEECSTTCCE
T ss_pred             cccCCeEeC-CCCEEEEEeCCCCEEEEEECCCC--eEEEE--CCCCCcceeeEC-CCCcEEEEecCCCeEEEEcCCCCcE
Confidence            378899999 777 8888999999999999877  45555  456789999998 6788887777789999999977653


Q ss_pred             cccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-----------------CCCcEEEEECCCCcEEEEEccccCCCe
Q 004969          534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-----------------YSKNIALYDINSGRRLQVFADMHKEHI  596 (721)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-----------------~Dg~IrlWDl~s~~~v~~l~~~h~~~V  596 (721)
                      .... .....    .....+..++++|+|..+++.+                 ..+.|..+|.. ++.. .+.. +....
T Consensus       103 ~~~~-~~~~~----~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~~-~~~~~  174 (296)
T 3e5z_A          103 ESIA-DSFEG----KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS-APIR-DRVKP  174 (296)
T ss_dssp             EEEE-CEETT----EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE-EEEC-CCSSE
T ss_pred             EEEe-eccCC----CCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEE-Eeec-CCCCC
Confidence            2110 00000    0113467899999988777632                 13456666655 5443 3333 66778


Q ss_pred             EEEEEcCCCCcEEEEEECCCcEEEEECC-CCCc-eeEEEecCCCC-eEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccc
Q 004969          597 NVVKFSNHSPSIFATSSFDQDVKLWDLR-QKPI-QPCYTASSSKG-NVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRD  673 (721)
Q Consensus       597 ~sI~fsPdg~~lLaSgs~DgtIrIWDlr-s~~~-~~~~~~~~~~~-~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~~  673 (721)
                      ..++|+|++ +.+++.+.++.|++||+. ++.. .....+..+.. +..++++++|+++++.  ++.|.+|+..|+.+..
T Consensus       175 ~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g~~~~~  251 (296)
T 3e5z_A          175 NGLAFLPSG-NLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPDGDELGR  251 (296)
T ss_dssp             EEEEECTTS-CEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTTSCEEEE
T ss_pred             ccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCCCCEEEE
Confidence            999999999 566778888999999997 4443 11122222222 2378999999977766  8899999998766544


Q ss_pred             cc--cCeEEEEE-CCCC
Q 004969          674 FN--MSILAAYT-RPSS  687 (721)
Q Consensus       674 ~~--~~V~~v~f-sP~~  687 (721)
                      +.  ..+.+++| .|++
T Consensus       252 ~~~~~~~~~~~f~~~d~  268 (296)
T 3e5z_A          252 VLTPQTTSNLCFGGPEG  268 (296)
T ss_dssp             EECSSCCCEEEEESTTS
T ss_pred             EECCCCceeEEEECCCC
Confidence            32  12788888 6887

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.40  E-value=9.7e-11  Score=120.90  Aligned_cols=198  Identities=10%  Similarity=0.150  Sum_probs=141.3

Q ss_pred             CeEEEEEeCCCCCEEEEEEC-CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTL-DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~-DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~  533 (721)
                      .+..+++++.++.++++... ++.|++|| .+++.+..+.. .+...+.++++. ++++++++...++.|.+||.... .
T Consensus        78 ~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~-~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~~g~-~  153 (286)
T 1q7f_A           78 YPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGA-TILQHPRGVTVD-NKGRIIVVECKVMRVIIFDQNGN-V  153 (286)
T ss_dssp             SEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECT-TTCSCEEEEEEC-TTSCEEEEETTTTEEEEECTTSC-E
T ss_pred             CceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecC-ccCCCceEEEEe-CCCCEEEEECCCCEEEEEcCCCC-E
Confidence            58899996437776666643 89999999 56777766643 345678999998 67788888888899999996542 1


Q ss_pred             cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcc-ccCCCeEEEEEcCCCCcEEEEE
Q 004969          534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD-MHKEHINVVKFSNHSPSIFATS  612 (721)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~-~h~~~V~sI~fsPdg~~lLaSg  612 (721)
                       .....      ...+...+.++++++++..+++...++.|++||.. ++.+..+.. ++...+..++++|+| +++++.
T Consensus       154 -~~~~~------~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G-~l~v~~  224 (286)
T 1q7f_A          154 -LHKFG------CSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNG-EILIAD  224 (286)
T ss_dssp             -EEEEE------CTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTC-CEEEEE
T ss_pred             -EEEeC------CCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCC-CEEEEe
Confidence             11000      00122457899999988766666678999999974 666666653 123678999999999 788888


Q ss_pred             ECCC-cEEEEECCCCCceeEEEecCCC-CeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          613 SFDQ-DVKLWDLRQKPIQPCYTASSSK-GNVMVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       613 s~Dg-tIrIWDlrs~~~~~~~~~~~~~-~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                      ..++ .|++||... +....+...... .+..++++|+|+++++ +.++.|++|++.
T Consensus       225 ~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~  279 (286)
T 1q7f_A          225 NHNNFNLTIFTQDG-QLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYV  279 (286)
T ss_dssp             CSSSCEEEEECTTS-CEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECS
T ss_pred             CCCCEEEEEECCCC-CEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcc
Confidence            8776 999999654 333333332222 3458999999987776 679999999986

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.37  E-value=7.9e-12  Score=134.11  Aligned_cols=217  Identities=10%  Similarity=-0.032  Sum_probs=142.5

Q ss_pred             EEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEE-------------------EEEeeCCCCEEEEE--
Q 004969          459 FEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLG-------------------LCWLKKYPSKLIAG--  517 (721)
Q Consensus       459 lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~s-------------------l~fsp~d~~~LaSg--  517 (721)
                      +.|+| ++++|+.++.++.|++||+.+++......  .+......                   +.|+ ++++.++.+  
T Consensus        86 ~~~sp-dg~~l~~~~~~~~l~~~d~~~~~~~~~~~--~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~s-pdg~~~~~~~~  161 (396)
T 3c5m_A           86 GFIST-DERAFFYVKNELNLMKVDLETLEEQVIYT--VDEEWKGYGTWVANSDCTKLVGIEILKRDWQ-PLTSWEKFAEF  161 (396)
T ss_dssp             CEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEE--CCTTEEEEEEEEECTTSSEEEEEEEEGGGCC-CCCSHHHHHHH
T ss_pred             ceECC-CCCEEEEEEcCCcEEEEECCCCCcEEEEe--cccccCCCCCEEEeccCCccccccccccccC-CCCcceeeeee
Confidence            67999 99999999999999999999887765554  22222222                   2344 344444433  


Q ss_pred             ---eCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEec-CCCEEEEEeCC------CcEEEEECCCCcEEEE
Q 004969          518 ---SDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNS-MDELFLASGYS------KNIALYDINSGRRLQV  587 (721)
Q Consensus       518 ---s~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp-~~~~lls~g~D------g~IrlWDl~s~~~v~~  587 (721)
                         ..+..|.+||+.+++..          ....+...+..+.|+| ++..++.++.+      ..|.+||+..++.. .
T Consensus       162 ~~~~~~~~l~~~d~~~g~~~----------~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~  230 (396)
T 3c5m_A          162 YHTNPTCRLIKVDIETGELE----------VIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-K  230 (396)
T ss_dssp             HHTCCCEEEEEEETTTCCEE----------EEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-E
T ss_pred             ccCCCcceEEEEECCCCcEE----------eeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-E
Confidence               45678999999875431          1123445678999999 67777766543      46899998765533 3


Q ss_pred             Ecccc-CCCeEEEEEcCCCCcEEEEEECC-----CcEEEEECCCCCceeEEEecCCCCeEEEEEec-CCCEEEEEe----
Q 004969          588 FADMH-KEHINVVKFSNHSPSIFATSSFD-----QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSP-DDHYLLGKG----  656 (721)
Q Consensus       588 l~~~h-~~~V~sI~fsPdg~~lLaSgs~D-----gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSp-dg~~Lasgs----  656 (721)
                      +.... ...+..++|+|+| ..|+.++.+     +.|++||+.+++...+....+   . .+.|+| +|+++++++    
T Consensus       231 l~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~---~-~~~~s~~dg~~l~~~~~~~p  305 (396)
T 3c5m_A          231 IKEHAEGESCTHEFWIPDG-SAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP---C-SHLMSNFDGSLMVGDGCDAP  305 (396)
T ss_dssp             SSCCCTTEEEEEEEECTTS-SCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS---E-EEEEECSSSSEEEEEECCC-
T ss_pred             eeccCCCccccceEECCCC-CEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC---C-CCCccCCCCceEEEecCCcc
Confidence            33211 2357889999999 555544433     449999999886554443332   2 289999 999888765    


Q ss_pred             ------------CCCcEEEEEcCCCccc---cccc-----------CeEEEEECCCCCcccccccEEEEecC
Q 004969          657 ------------SGTSMFVQSLRGDPFR---DFNM-----------SILAAYTRPSSKSEIVKVNLLASTDH  702 (721)
Q Consensus       657 ------------~Dg~I~VWDl~g~~l~---~~~~-----------~V~~v~fsP~~~~~~v~v~lLASgs~  702 (721)
                                  .++.|++||+.+....   .+..           .+....|+|++       ..|+.++.
T Consensus       306 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg-------~~l~~~s~  370 (396)
T 3c5m_A          306 VDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPND-------DGVLFTSD  370 (396)
T ss_dssp             ---------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTS-------SEEEEEEC
T ss_pred             eeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCC-------CeEEEEec
Confidence                        3468999998754332   2222           14557899999       55665554

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.37  E-value=1.1e-11  Score=146.86  Aligned_cols=209  Identities=7%  Similarity=0.019  Sum_probs=140.4

Q ss_pred             EEEEEeCCCCCEEEEEECC---------CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEE
Q 004969          457 RQFEYHPSISCLMVFGTLD---------GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYD  527 (721)
Q Consensus       457 ~~lafsP~dg~~LasGs~D---------G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWD  527 (721)
                      ..++||| |+++|+.++.+         +.+.+||+.+++... +.  .|...+...+|+ ++++.|+.++ |+.|.+|+
T Consensus        65 ~~~~~Sp-dg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~--~~~~~~~~~~~S-PdG~~la~~~-~~~i~~~~  138 (740)
T 4a5s_A           65 NDYSISP-DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EE--RIPNNTQWVTWS-PVGHKLAYVW-NNDIYVKI  138 (740)
T ss_dssp             CEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SS--CCCTTEEEEEEC-SSTTCEEEEE-TTEEEEES
T ss_pred             cceEECC-CCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-cc--cCCCcceeeEEC-CCCCEEEEEE-CCeEEEEE
Confidence            4589999 99999999876         667799999987643 33  667889999999 7888888874 68999999


Q ss_pred             cCCCCCcccccccCcceeEeccC---------CCeEEEEEecCCCEEEEEeCCC--------------------------
Q 004969          528 IRHMPPSIRGMHYGAGTVTFDEF---------DQLTSVHVNSMDELFLASGYSK--------------------------  572 (721)
Q Consensus       528 i~~~~~~~~~~~~~~~~~~~~~~---------~~V~sv~~sp~~~~lls~g~Dg--------------------------  572 (721)
                      +.++........+....+...+.         .....+.|+|+|..|+.++.|.                          
T Consensus       139 ~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~y  218 (740)
T 4a5s_A          139 EPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPY  218 (740)
T ss_dssp             STTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEEC
T ss_pred             CCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecC
Confidence            98876532222222211111111         2234589999999998875321                          


Q ss_pred             ----------cEEEEECCC---Cc--EEEEEcc-----ccCCCeEEEEEcCCCCcEEEEEEC----CCcEEEEECCCCC-
Q 004969          573 ----------NIALYDINS---GR--RLQVFAD-----MHKEHINVVKFSNHSPSIFATSSF----DQDVKLWDLRQKP-  627 (721)
Q Consensus       573 ----------~IrlWDl~s---~~--~v~~l~~-----~h~~~V~sI~fsPdg~~lLaSgs~----DgtIrIWDlrs~~-  627 (721)
                                +|++||+.+   ++  ....+..     .|...+..++|+|+| ++++....    +..|++||+.+++ 
T Consensus       219 p~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg-~~~~~~~~r~~~~~~i~~~d~~tg~~  297 (740)
T 4a5s_A          219 PKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQE-RISLQWLRRIQNYSVMDICDYDESSG  297 (740)
T ss_dssp             CBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETT-EEEEEEEESSTTEEEEEEEEEETTTT
T ss_pred             CCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCC-eEEEEEeCCCCCEEEEEEEECCCCcc
Confidence                      588899988   73  2233331     267789999999999 55554432    3479999999886 


Q ss_pred             ---ceeEEEe--cCCCCe------EEEEEecCCCEEE-EEeC-CC--cEEEEEcCCCccc
Q 004969          628 ---IQPCYTA--SSSKGN------VMVCFSPDDHYLL-GKGS-GT--SMFVQSLRGDPFR  672 (721)
Q Consensus       628 ---~~~~~~~--~~~~~~------vsl~fSpdg~~La-sgs~-Dg--~I~VWDl~g~~l~  672 (721)
                         +..+..+  ..+...      ...+|+|||+.++ ..+. +|  .|++||+.+...+
T Consensus       298 ~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~  357 (740)
T 4a5s_A          298 RWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT  357 (740)
T ss_dssp             EEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE
T ss_pred             ccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE
Confidence               2221111  223322      2578999999877 6653 33  6888998865433

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.35  E-value=3.1e-11  Score=128.46  Aligned_cols=210  Identities=6%  Similarity=0.039  Sum_probs=145.3

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe-EEEEeec-------CCCCCCeEEEEEeeCCCCEEEEEe-CCCeEEE
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN-IVSYIPS-------FGAMNSVLGLCWLKKYPSKLIAGS-DNGSLKL  525 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~-~i~~l~~-------~~H~~~V~sl~fsp~d~~~LaSgs-~DGtVrI  525 (721)
                      .+..++++| +++++++...++.|++|+..... .+..+..       .++.....+|++.|.++.++++.+ .++.|++
T Consensus        92 ~p~gia~d~-~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~  170 (329)
T 3fvz_A           92 LPHGLSIDT-DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQ  170 (329)
T ss_dssp             SEEEEEECT-TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEE
T ss_pred             CceEEEECC-CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEE
Confidence            589999999 88999999999999999986442 4444421       244557899999844788888886 6999999


Q ss_pred             EEcCCCCCcccccc--cCcceeEeccCCCeEEEEEecCCCEEEEE-eCCCcEEEEECCCCcEEEEEcc-ccCCCeEEEEE
Q 004969          526 YDIRHMPPSIRGMH--YGAGTVTFDEFDQLTSVHVNSMDELFLAS-GYSKNIALYDINSGRRLQVFAD-MHKEHINVVKF  601 (721)
Q Consensus       526 WDi~~~~~~~~~~~--~~~~~~~~~~~~~V~sv~~sp~~~~lls~-g~Dg~IrlWDl~s~~~v~~l~~-~h~~~V~sI~f  601 (721)
                      ||... ... ....  +........+......++++|+++.++++ ..++.|++||..+++.+..+.. .+...+..++|
T Consensus       171 ~~~~g-~~~-~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~  248 (329)
T 3fvz_A          171 FSPSG-KFV-TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISY  248 (329)
T ss_dssp             ECTTS-CEE-EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEE
T ss_pred             EcCCC-CEE-EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeee
Confidence            99543 221 1110  00000000011236899999985555554 4688999999999999888852 25678899999


Q ss_pred             cCCCCcEEEEEE-------CCCcEEEEECCCCCceeEEEe-cCC-CCeEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004969          602 SNHSPSIFATSS-------FDQDVKLWDLRQKPIQPCYTA-SSS-KGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGD  669 (721)
Q Consensus       602 sPdg~~lLaSgs-------~DgtIrIWDlrs~~~~~~~~~-~~~-~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~  669 (721)
                      +| + ..+++.+       .+..|++||..+++....+.. ..+ ..+..++++|+|..+++...++.|++|++.+.
T Consensus       249 ~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          249 IP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             ET-T-EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred             cC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence            99 4 4444443       345899999998865433211 122 33458999999988888888999999998753

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.32  E-value=7.7e-12  Score=134.19  Aligned_cols=220  Identities=9%  Similarity=0.006  Sum_probs=138.3

Q ss_pred             eEEEEEeCCCCCEEEEEECC---CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969          456 PRQFEYHPSISCLMVFGTLD---GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP  532 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~D---G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~  532 (721)
                      +..++|+| +|++|+.+...   ..|.+||+.+++......  ++......+.|+ ++++.|+.++.++.|.+||+.+++
T Consensus        38 ~~~~~~Sp-dG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~--~~~~~~~~~~~s-pdg~~l~~~~~~~~l~~~d~~~~~  113 (396)
T 3c5m_A           38 FYQKCFTQ-DGKKLLFAGDFDGNRNYYLLNLETQQAVQLTE--GKGDNTFGGFIS-TDERAFFYVKNELNLMKVDLETLE  113 (396)
T ss_dssp             TTSCCBCT-TSCEEEEEECTTSSCEEEEEETTTTEEEECCC--SSCBCTTTCEEC-TTSSEEEEEETTTEEEEEETTTCC
T ss_pred             eecCcCCC-CCCEEEEEEecCCCceEEEEECCCCcEEEeec--CCCCccccceEC-CCCCEEEEEEcCCcEEEEECCCCC
Confidence            55678999 89988877553   478899999887654332  222223337788 789999999999999999998865


Q ss_pred             CcccccccCccee------EeccCCCeE-----EEEEecCCCEEEEE-----eCCCcEEEEECCCCcEEEEEccccCCCe
Q 004969          533 PSIRGMHYGAGTV------TFDEFDQLT-----SVHVNSMDELFLAS-----GYSKNIALYDINSGRRLQVFADMHKEHI  596 (721)
Q Consensus       533 ~~~~~~~~~~~~~------~~~~~~~V~-----sv~~sp~~~~lls~-----g~Dg~IrlWDl~s~~~v~~l~~~h~~~V  596 (721)
                      ..... .......      .+.......     .+.|+|++..++.+     ..+..|++||+.+++......  +...+
T Consensus       114 ~~~~~-~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~--~~~~~  190 (396)
T 3c5m_A          114 EQVIY-TVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ--DTAWL  190 (396)
T ss_dssp             EEEEE-ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE--ESSCE
T ss_pred             cEEEE-ecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeecc--CCccc
Confidence            32111 0010000      000000000     02456666665544     346689999999888765553  67789


Q ss_pred             EEEEEcC-CCCcEEEEEECC------CcEEEEECCCCCceeEEEecCCC-C-eE-EEEEecCCCEEEEEeCC-----CcE
Q 004969          597 NVVKFSN-HSPSIFATSSFD------QDVKLWDLRQKPIQPCYTASSSK-G-NV-MVCFSPDDHYLLGKGSG-----TSM  661 (721)
Q Consensus       597 ~sI~fsP-dg~~lLaSgs~D------gtIrIWDlrs~~~~~~~~~~~~~-~-~v-sl~fSpdg~~Lasgs~D-----g~I  661 (721)
                      ..+.|+| ++ ..++..+.+      ..|.+||+.++....+   ..+. . .+ .++|+|+|++|+.++.+     +.|
T Consensus       191 ~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l---~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l  266 (396)
T 3c5m_A          191 GHPIYRPFDD-STVGFCHEGPHDLVDARMWLVNEDGSNVRKI---KEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVI  266 (396)
T ss_dssp             EEEEEETTEE-EEEEEEECSCSSSCSCCCEEEETTSCCCEES---SCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEE
T ss_pred             ccceECCCCC-CEEEEEecCCCCCCCceEEEEECCCCceeEe---eccCCCccccceEECCCCCEEEEEecCCCCccceE
Confidence            9999999 67 555555443      3688899876643222   2222 2 23 78999999988776543     349


Q ss_pred             EEEEcCCCccccc-cc-CeEEEEECC-CC
Q 004969          662 FVQSLRGDPFRDF-NM-SILAAYTRP-SS  687 (721)
Q Consensus       662 ~VWDl~g~~l~~~-~~-~V~~v~fsP-~~  687 (721)
                      ++||+.+...... .. ... ..|+| ++
T Consensus       267 ~~~d~~~g~~~~l~~~~~~~-~~~s~~dg  294 (396)
T 3c5m_A          267 YKANPETLENEEVMVMPPCS-HLMSNFDG  294 (396)
T ss_dssp             EEECTTTCCEEEEEECCSEE-EEEECSSS
T ss_pred             EEEECCCCCeEEeeeCCCCC-CCccCCCC
Confidence            9999974332221 11 223 88999 98

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.31  E-value=5e-11  Score=138.24  Aligned_cols=230  Identities=8%  Similarity=-0.005  Sum_probs=146.5

Q ss_pred             CeEEEEEeCCCCCEEEEE--ECCCeEEEEECCCCeEEEEeecCCCCCCeE---------EEEEee-CCCCE-EEEEeC-C
Q 004969          455 RPRQFEYHPSISCLMVFG--TLDGEIVVVNHENENIVSYIPSFGAMNSVL---------GLCWLK-KYPSK-LIAGSD-N  520 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasG--s~DG~I~IWdl~tg~~i~~l~~~~H~~~V~---------sl~fsp-~d~~~-LaSgs~-D  520 (721)
                      .+..++|++ +.-+++++  +.++...||....+.....+.  .|...+.         ...|+. ++++. |+.++. +
T Consensus        25 ~~~~~~~s~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~  101 (662)
T 3azo_A           25 RPACVGAVG-DEVWWVAPRPAEAGRATLVRRRADGAEESAL--PAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGD  101 (662)
T ss_dssp             CCEEEEEET-TEEEEEEEETTTTTEEEEEEECTTSCEEESS--CTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTT
T ss_pred             ccceeEEcC-CeEEEEecCcccCCcEEEEEECCCCCcceeC--CCCccccccccccCCccceeeeecCCCeEEEEEECCC
Confidence            588999998 66666666  458899999965455455554  4555555         666762 67777 665543 5


Q ss_pred             CeEEEEEcC--C-CCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC----------CcEEEEECCC------
Q 004969          521 GSLKLYDIR--H-MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS----------KNIALYDINS------  581 (721)
Q Consensus       521 GtVrIWDi~--~-~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D----------g~IrlWDl~s------  581 (721)
                      ..|.+|++.  + +..  ..+....   ...+...+.+++|+|++..+++++.+          ..|++||+.+      
T Consensus       102 ~~l~~~~~~~~g~~~~--~~l~~~~---~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  176 (662)
T 3azo_A          102 QRLYAFEPDAPGGAVP--RPLTPVS---AVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADR  176 (662)
T ss_dssp             CCEEEECTTSTTCCCC--EECSCCC---CSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCG
T ss_pred             CeEEEEcCCCCCCCCC--EeccCCc---cCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccC
Confidence            566666665  2 222  1111100   00022346889999999999998876          5899999987      


Q ss_pred             CcEEEEEc-cccCCCeEEEEEcCCCCcEEEEEECC--------CcEEEEECC-CCCceeEEE-ecCCCCe-EEEEEecCC
Q 004969          582 GRRLQVFA-DMHKEHINVVKFSNHSPSIFATSSFD--------QDVKLWDLR-QKPIQPCYT-ASSSKGN-VMVCFSPDD  649 (721)
Q Consensus       582 ~~~v~~l~-~~h~~~V~sI~fsPdg~~lLaSgs~D--------gtIrIWDlr-s~~~~~~~~-~~~~~~~-vsl~fSpdg  649 (721)
                      ++. ..+. . +...+..++|+||| +.|+.++.+        ..|++||+. ++....... ..++... ..++|+|||
T Consensus       177 ~~~-~~l~~~-~~~~~~~~~~SpDG-~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg  253 (662)
T 3azo_A          177 SAV-RELSDD-AHRFVTGPRLSPDG-RQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDG  253 (662)
T ss_dssp             GGS-EESSCS-CSSEECCCEECTTS-SEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTS
T ss_pred             Cce-eEEEec-CCCcccCceECCCC-CEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCC
Confidence            554 3444 3 55678889999999 677766644        379999998 452111122 2233333 489999999


Q ss_pred             CEEEEEeCCC--cEEEEEcCCCccc---ccccC---------eEEEEECCCCCcccccccEEEEecC
Q 004969          650 HYLLGKGSGT--SMFVQSLRGDPFR---DFNMS---------ILAAYTRPSSKSEIVKVNLLASTDH  702 (721)
Q Consensus       650 ~~Lasgs~Dg--~I~VWDl~g~~l~---~~~~~---------V~~v~fsP~~~~~~v~v~lLASgs~  702 (721)
                      +++++++.++  .|++||+.+...+   .+...         +..++|+|++       .++++++.
T Consensus       254 ~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~-------~~~~~~~~  313 (662)
T 3azo_A          254 SLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANG-------LIAVVHGK  313 (662)
T ss_dssp             CEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTS-------CEEEEEBS
T ss_pred             eEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCC-------EEEEEEEc
Confidence            9888888788  5666776433221   11111         4567888888       66666543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.30  E-value=3.2e-10  Score=115.48  Aligned_cols=225  Identities=9%  Similarity=0.077  Sum_probs=153.8

Q ss_pred             CeEEEEEeCCCCCEEE-EEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969          455 RPRQFEYHPSISCLMV-FGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       455 ~V~~lafsP~dg~~La-sGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~  533 (721)
                      .+.+++++| ++.+++ +.+.++.|.+|+..++... .+. ..+...+.++++. ++++++++.. ++.|.+||..+...
T Consensus        25 ~p~~i~~~~-~g~l~v~~~~~~~~i~~~~~~~~~~~-~~~-~~~~~~p~~i~~~-~~g~l~v~~~-~~~i~~~d~~~~~~   99 (270)
T 1rwi_B           25 SPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTT-VLP-FNGLYQPQGLAVD-GAGTVYVTDF-NNRVVTLAAGSNNQ   99 (270)
T ss_dssp             CEEEEEECT-TCCEEEEECSSSCEEEEECC-----E-ECC-CCSCCSCCCEEEC-TTCCEEEEET-TTEEEEECTTCSCC
T ss_pred             CccceEECC-CCCEEEEccCCCCcEEEecCCCcccc-eEe-eCCcCCcceeEEC-CCCCEEEEcC-CCEEEEEeCCCceE
Confidence            588999999 888777 5477899999997655432 222 1334567889997 5677666655 88999999876433


Q ss_pred             cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969          534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS  613 (721)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs  613 (721)
                      ...         .......+.++++++++..+++...++.|.+||..+......... ....+.+++++|+| +++++..
T Consensus       100 ~~~---------~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~-~~~~p~~i~~~~~g-~l~v~~~  168 (270)
T 1rwi_B          100 TVL---------PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT-GLNDPDGVAVDNSG-NVYVTDT  168 (270)
T ss_dssp             EEC---------CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCC-SCCSCCCEEECTTC-CEEEEEG
T ss_pred             eee---------ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccc-cCCCceeEEEeCCC-CEEEEEC
Confidence            110         111224578999999888666666788999998766544332222 33467889999998 6777777


Q ss_pred             CCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCccccc----ccCeEEEEECCCCCc
Q 004969          614 FDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDF----NMSILAAYTRPSSKS  689 (721)
Q Consensus       614 ~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~~~----~~~V~~v~fsP~~~~  689 (721)
                      .++.|.+||....... .........+..++++++|..+++...++.|.+|+..+......    ...+..++++|++  
T Consensus       169 ~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g--  245 (270)
T 1rwi_B          169 DNNRVVKLEAESNNQV-VLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDR--  245 (270)
T ss_dssp             GGTEEEEECTTTCCEE-ECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTC--
T ss_pred             CCCEEEEEecCCCceE-eecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCC--
Confidence            7889999998876432 11112224455899999998888777788999999886543221    1368889999999  


Q ss_pred             ccccccEEEEecCC
Q 004969          690 EIVKVNLLASTDHC  703 (721)
Q Consensus       690 ~~v~v~lLASgs~~  703 (721)
                           .++++....
T Consensus       246 -----~l~v~~~~~  254 (270)
T 1rwi_B          246 -----TVYVADRGN  254 (270)
T ss_dssp             -----CEEEEEGGG
T ss_pred             -----CEEEEECCC
Confidence                 777776554

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.30  E-value=5.4e-11  Score=137.98  Aligned_cols=208  Identities=8%  Similarity=0.035  Sum_probs=138.5

Q ss_pred             EEEEe--CCCCCE-EEEEEC-CCeEEEEECC--C-CeEEEEeecCC---CCCCeEEEEEeeCCCCEEEEEeCC-------
Q 004969          458 QFEYH--PSISCL-MVFGTL-DGEIVVVNHE--N-ENIVSYIPSFG---AMNSVLGLCWLKKYPSKLIAGSDN-------  520 (721)
Q Consensus       458 ~lafs--P~dg~~-LasGs~-DG~I~IWdl~--t-g~~i~~l~~~~---H~~~V~sl~fsp~d~~~LaSgs~D-------  520 (721)
                      .+.|+  | |++. |+.++. +..|.+|++.  + +. ...+....   |...+.+++|+ ++++.|++++.|       
T Consensus        81 ~~~~~~SP-Dg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~s-pDg~~l~~~~~~~~~~~~~  157 (662)
T 3azo_A           81 PWAGVPRP-AGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLL-PERGEVWCMAEEFTGEGPS  157 (662)
T ss_dssp             CEEEECCS-SSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEE-TTTTEEEEEEEEECSSSTT
T ss_pred             cceeeeec-CCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEEC-CCCCEEEEEEecccCCCCC
Confidence            34555  8 7777 666554 5667777765  3 43 33444211   56778999999 789999988877       


Q ss_pred             ---CeEEEEEcCC------CCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC--------CcEEEEECC-CC
Q 004969          521 ---GSLKLYDIRH------MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS--------KNIALYDIN-SG  582 (721)
Q Consensus       521 ---GtVrIWDi~~------~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D--------g~IrlWDl~-s~  582 (721)
                         ..|.+||+.+      +..  ..+.       ..+...+..++|+|+|..++.++.+        ..|++||+. ++
T Consensus       158 ~~~~~i~~~~~~~~~~~~~~~~--~~l~-------~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g  228 (662)
T 3azo_A          158 DVRRFLAAVPLDGSAAADRSAV--RELS-------DDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDG  228 (662)
T ss_dssp             CEEEEEEEEETTSTTTTCGGGS--EESS-------CSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTS
T ss_pred             CceeEEEEEECCCCccccCCce--eEEE-------ecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCC
Confidence               6899999987      332  1111       0123456778999999999988754        379999999 57


Q ss_pred             --cEEEEEccccCCCeEEEEEcCCCCcEEEEEECCC--cEEEEECCCCCceeEEEecCCCC---------eEEEEEecCC
Q 004969          583 --RRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQ--DVKLWDLRQKPIQPCYTASSSKG---------NVMVCFSPDD  649 (721)
Q Consensus       583 --~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~Dg--tIrIWDlrs~~~~~~~~~~~~~~---------~vsl~fSpdg  649 (721)
                        .....+...|...+..+.|+|+| +++++++.++  .|.+||+.+++...+.  ..+..         ...++|+|++
T Consensus       229 ~~~~~~~l~~~~~~~~~~~~~spdg-~l~~~~~~~~~~~l~~~~~~~~~~~~l~--~~~~~~~~p~w~~~~~~~~~~~~~  305 (662)
T 3azo_A          229 RFADTRTLLGGPEEAIAQAEWAPDG-SLIVATDRTGWWNLHRVDPATGAATQLC--RREEEFAGPLWTPGMRWFAPLANG  305 (662)
T ss_dssp             CEEEEEEEEEETTBCEEEEEECTTS-CEEEEECTTSSCEEEEECTTTCCEEESS--CCSSBSSCCCCSTTCCSEEECTTS
T ss_pred             cccccEEeCCCCCceEcceEECCCC-eEEEEECCCCCeEEEEEECCCCceeecc--cccccccCccccccCceEeEeCCC
Confidence              13333433267889999999999 5888888888  5666666566433222  12211         1258899999


Q ss_pred             CEEEEEeCCCcEEEE--EcCCCcccc---cccCeEEE
Q 004969          650 HYLLGKGSGTSMFVQ--SLRGDPFRD---FNMSILAA  681 (721)
Q Consensus       650 ~~Lasgs~Dg~I~VW--Dl~g~~l~~---~~~~V~~v  681 (721)
                      +++++++. +.+++|  |+.+...+.   +...+..+
T Consensus       306 ~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~  341 (662)
T 3azo_A          306 LIAVVHGK-GAAVLGILDPESGELVDAAGPWTEWAAT  341 (662)
T ss_dssp             CEEEEEBS-SSCEEEEEETTTTEEEECCSSCCEEEEE
T ss_pred             EEEEEEEc-CccEEEEEECCCCcEEEecCCCCeEEEE
Confidence            99999998 999998  555443332   23345544

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.29  E-value=9.7e-10  Score=117.04  Aligned_cols=222  Identities=7%  Similarity=0.020  Sum_probs=152.7

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI  535 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~  535 (721)
                      +..+.+..  +.++++...++.|.+||..+++.+..+..   ......++++ +++..+++...++.|.+||..+++...
T Consensus        46 ~~~i~~~~--~~lyv~~~~~~~v~viD~~t~~~~~~i~~---~~~p~~i~~~-~~g~lyv~~~~~~~v~~iD~~t~~~~~  119 (328)
T 3dsm_A           46 AQSMVIRD--GIGWIVVNNSHVIFAIDINTFKEVGRITG---FTSPRYIHFL-SDEKAYVTQIWDYRIFIINPKTYEITG  119 (328)
T ss_dssp             EEEEEEET--TEEEEEEGGGTEEEEEETTTCCEEEEEEC---CSSEEEEEEE-ETTEEEEEEBSCSEEEEEETTTTEEEE
T ss_pred             ceEEEEEC--CEEEEEEcCCCEEEEEECcccEEEEEcCC---CCCCcEEEEe-CCCeEEEEECCCCeEEEEECCCCeEEE
Confidence            67777754  45666666789999999999999888852   3568899997 455444444489999999998854311


Q ss_pred             cccccCcceeEeccCCCeEEEEEecCCCEEEEEe--CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969          536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG--YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS  613 (721)
Q Consensus       536 ~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g--~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs  613 (721)
                      . ......   .........+++  +++.++++.  .++.|.+||+.+++.+..+..  ......+.++|+| ++++++.
T Consensus       120 ~-i~~g~~---~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~--g~~p~~i~~~~dG-~l~v~~~  190 (328)
T 3dsm_A          120 Y-IECPDM---DMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTI--GIQPTSLVMDKYN-KMWTITD  190 (328)
T ss_dssp             E-EECTTC---CTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC--SSCBCCCEECTTS-EEEEEBC
T ss_pred             E-EEcCCc---cccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc--CCCccceEEcCCC-CEEEEEC
Confidence            1 100000   000013455666  456666665  388999999999998888763  3456789999998 6777665


Q ss_pred             CC----------CcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCccc--cc----ccC
Q 004969          614 FD----------QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFR--DF----NMS  677 (721)
Q Consensus       614 ~D----------gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~--~~----~~~  677 (721)
                      .+          +.|.+||..+++............+..++|+|++++++++..  .|++||.....+.  .+    ...
T Consensus       191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~  268 (328)
T 3dsm_A          191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTK  268 (328)
T ss_dssp             CBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSC
T ss_pred             CCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCc
Confidence            54          789999999886544444433345668999999999988764  8999998743321  11    246


Q ss_pred             eEEEEECCCCCcccccccEEEEe
Q 004969          678 ILAAYTRPSSKSEIVKVNLLAST  700 (721)
Q Consensus       678 V~~v~fsP~~~~~~v~v~lLASg  700 (721)
                      ...++++|++.      .+.++.
T Consensus       269 p~gi~vdp~~g------~lyva~  285 (328)
T 3dsm_A          269 YYGLTVNPNNG------EVYVAD  285 (328)
T ss_dssp             EEEEEECTTTC------CEEEEE
T ss_pred             eEEEEEcCCCC------eEEEEc
Confidence            88899999442      566665

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.29  E-value=6.9e-10  Score=120.05  Aligned_cols=224  Identities=9%  Similarity=-0.005  Sum_probs=143.4

Q ss_pred             eEEEEEeCCCCCEEEEEE----------CCCeEEEEECCCCeEEEEeecCC----CCCCeEEEEEeeCCCCEEEEEeC--
Q 004969          456 PRQFEYHPSISCLMVFGT----------LDGEIVVVNHENENIVSYIPSFG----AMNSVLGLCWLKKYPSKLIAGSD--  519 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs----------~DG~I~IWdl~tg~~i~~l~~~~----H~~~V~sl~fsp~d~~~LaSgs~--  519 (721)
                      + .++|+| ++++++++.          .+++|.+||..+++.+..+....    +......++++ +++++|+++..  
T Consensus        53 p-~i~~sp-dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~s-pdg~~l~v~n~~~  129 (361)
T 2oiz_A           53 G-HVQVSN-DGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQT-TDGKFIVLQNASP  129 (361)
T ss_dssp             E-EEEECT-TSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEEC-TTSSEEEEEEESS
T ss_pred             C-ceEECC-CCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEEC-CCCCEEEEECCCC
Confidence            5 899999 999988886          36789999999999888876421    22456678898 78898888864  


Q ss_pred             CCeEEEEEcCCCCCcccc-cccCcc------------eeEeccCCCeEEEEE---------------------------e
Q 004969          520 NGSLKLYDIRHMPPSIRG-MHYGAG------------TVTFDEFDQLTSVHV---------------------------N  559 (721)
Q Consensus       520 DGtVrIWDi~~~~~~~~~-~~~~~~------------~~~~~~~~~V~sv~~---------------------------s  559 (721)
                      +++|.+||+.+++.. .. +.....            .+.....+.+..+.+                           .
T Consensus       130 ~~~v~v~d~~~~~~~-~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  208 (361)
T 2oiz_A          130 ATSIGIVDVAKGDYV-EDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPA  208 (361)
T ss_dssp             SEEEEEEETTTTEEE-EEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCE
T ss_pred             CCeEEEEECCCCcEE-EEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEec
Confidence            689999999986542 11 111000            011111111111111                           2


Q ss_pred             cCCCEEEEEeCCCcEEEEECCCCcE--EEEEcc-----cc----CCCeEEEEEcCCCCcEEEEEEC----------CCcE
Q 004969          560 SMDELFLASGYSKNIALYDINSGRR--LQVFAD-----MH----KEHINVVKFSNHSPSIFATSSF----------DQDV  618 (721)
Q Consensus       560 p~~~~lls~g~Dg~IrlWDl~s~~~--v~~l~~-----~h----~~~V~sI~fsPdg~~lLaSgs~----------DgtI  618 (721)
                      +++..++..+.++.+.++|+..+..  +..+.-     .+    ......++|+|++..++++.+.          .++|
T Consensus       209 ~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v  288 (361)
T 2oiz_A          209 LDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEI  288 (361)
T ss_dssp             ECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEE
T ss_pred             ccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceE
Confidence            3344455555667788888765432  122110     00    0111237899998555555441          3479


Q ss_pred             EEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC---Ccccc---cccCeEEEEECCCC
Q 004969          619 KLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRG---DPFRD---FNMSILAAYTRPSS  687 (721)
Q Consensus       619 rIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g---~~l~~---~~~~V~~v~fsP~~  687 (721)
                      .+||+.+++.  +..+..+. +..++|+|||++|++++. +.|.+||...   +.+..   .......+.++|++
T Consensus       289 ~viD~~t~~~--v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G  359 (361)
T 2oiz_A          289 WVMDTKTKQR--VARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVG  359 (361)
T ss_dssp             EEEETTTTEE--EEEEECTT-CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCS
T ss_pred             EEEECCCCcE--EEEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCC
Confidence            9999999854  44555555 669999999999998886 9999999884   33333   34567889999987

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.28  E-value=3.9e-10  Score=132.69  Aligned_cols=219  Identities=9%  Similarity=0.035  Sum_probs=149.0

Q ss_pred             CeEEEEEeCCCCCEEEEEECCC-----eEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCe-------
Q 004969          455 RPRQFEYHPSISCLMVFGTLDG-----EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGS-------  522 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG-----~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGt-------  522 (721)
                      .+..++||| ||++||.+..++     +|++||+.+|+......  .+ ..+.+++|+ ++++.|+.++.++.       
T Consensus       126 ~~~~~~~SP-Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~--~~-~~~~~~~ws-pDg~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          126 ALRGYAFSE-DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL--ER-VKFSCMAWT-HDGKGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             EEEEEEECT-TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE--EE-ECSCCEEEC-TTSSEEEEEECCCCSSCCSSS
T ss_pred             EEEEEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc--cC-cccceEEEE-eCCCEEEEEEECCcccccccc
Confidence            478899999 999998776644     89999999998766432  11 236679998 78899988888766       


Q ss_pred             ---------EEEEEcCCCCCcccccccCcceeEec---cCCCeEEEEEecCCCEEEEEeC-----CCcEEEEECCC----
Q 004969          523 ---------LKLYDIRHMPPSIRGMHYGAGTVTFD---EFDQLTSVHVNSMDELFLASGY-----SKNIALYDINS----  581 (721)
Q Consensus       523 ---------VrIWDi~~~~~~~~~~~~~~~~~~~~---~~~~V~sv~~sp~~~~lls~g~-----Dg~IrlWDl~s----  581 (721)
                               |++|++.+++...        ...+.   +...+.++.|+|++..++.++.     +..|++||+.+    
T Consensus       201 ~~~~~~~~~v~~~~l~t~~~~~--------~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~  272 (710)
T 2xdw_A          201 ETSTNLHQKLYYHVLGTDQSED--------ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNG  272 (710)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGC--------EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred             ccccCCCCEEEEEECCCCcccc--------eEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccc
Confidence                     9999998754210        11111   2234678999999999888764     56899999986    


Q ss_pred             --Cc-EEEEEccccCCCeEEEEEcCCCCcEEEEEECC---CcEEEEECCCCCceeEEEecCC-C-CeE-EEEEecCCCEE
Q 004969          582 --GR-RLQVFADMHKEHINVVKFSNHSPSIFATSSFD---QDVKLWDLRQKPIQPCYTASSS-K-GNV-MVCFSPDDHYL  652 (721)
Q Consensus       582 --~~-~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~D---gtIrIWDlrs~~~~~~~~~~~~-~-~~v-sl~fSpdg~~L  652 (721)
                        +. ....+.. +...+.. .|+|+|..+++.+..+   +.|.+||+.++.......+..+ . ..+ .++|++++.++
T Consensus       273 ~~~~~~~~~l~~-~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv  350 (710)
T 2xdw_A          273 ITGILKWVKLID-NFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLV  350 (710)
T ss_dssp             SCSSCCCEEEEC-SSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEE
T ss_pred             cCCccceEEeeC-CCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEE
Confidence              53 3455554 5555555 4888884444444433   3699999987642111222223 2 244 68899888888


Q ss_pred             EEEeCCCc--EEEEEc-CCCcccc---cccCeEEEEECCCCC
Q 004969          653 LGKGSGTS--MFVQSL-RGDPFRD---FNMSILAAYTRPSSK  688 (721)
Q Consensus       653 asgs~Dg~--I~VWDl-~g~~l~~---~~~~V~~v~fsP~~~  688 (721)
                      ++...++.  |++|++ .|...+.   ....+..+.++|++.
T Consensus       351 ~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~  392 (710)
T 2xdw_A          351 LCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDT  392 (710)
T ss_dssp             EEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCS
T ss_pred             EEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCC
Confidence            88888884  567787 4543332   245677888999873

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.25  E-value=7.5e-10  Score=115.48  Aligned_cols=209  Identities=12%  Similarity=0.059  Sum_probs=156.1

Q ss_pred             CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCC-CCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcc
Q 004969          465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAM-NSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAG  543 (721)
Q Consensus       465 dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~-~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~  543 (721)
                      .+++|++++.++.|++||.++|+.+..+..  +. ..+.++.+. +++++++  +.++.|..||. +++..         
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~--~~~~~~~~~~~~-pdG~ilv--s~~~~V~~~d~-~G~~~---------   68 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPL--EKGWECNSVAAT-KAGEILF--SYSKGAKMITR-DGREL---------   68 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEEC--CTTCCCCEEEEC-TTSCEEE--ECBSEEEEECT-TSCEE---------
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCC--CccCCCcCeEEC-CCCCEEE--eCCCCEEEECC-CCCEE---------
Confidence            358899999999999999999999998874  33 467888887 6888888  45778999998 55432         


Q ss_pred             eeEecc--CCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCcEEEEEcc-----ccCCCeEEEEEcCCCCcEEEEEECC
Q 004969          544 TVTFDE--FDQLTSVHVNSMDELFLASGY-SKNIALYDINSGRRLQVFAD-----MHKEHINVVKFSNHSPSIFATSSFD  615 (721)
Q Consensus       544 ~~~~~~--~~~V~sv~~sp~~~~lls~g~-Dg~IrlWDl~s~~~v~~l~~-----~h~~~V~sI~fsPdg~~lLaSgs~D  615 (721)
                       ..+..  ...+.++.+.+++..+++.+. ++.+..+|. +|+.++.+..     .+......+++.++| +++++...+
T Consensus        69 -W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G-~~lv~~~~~  145 (276)
T 3no2_A           69 -WNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKG-NYLVPLFAT  145 (276)
T ss_dssp             -EEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTS-CEEEEETTT
T ss_pred             -EEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCC-CEEEEecCC
Confidence             12221  235778889899999998887 778888886 6888877652     122245567789998 799999999


Q ss_pred             CcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC-CCcccccc---------cCeEEEEECC
Q 004969          616 QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR-GDPFRDFN---------MSILAAYTRP  685 (721)
Q Consensus       616 gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~l~~~~---------~~V~~v~fsP  685 (721)
                      +.|..||.. ++.  +.++.....+.++...++|+++++++.++.|..+|.. |+.+..+.         ..+..+...|
T Consensus       146 ~~v~~~d~~-G~~--~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~  222 (276)
T 3no2_A          146 SEVREIAPN-GQL--LNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQ  222 (276)
T ss_dssp             TEEEEECTT-SCE--EEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECT
T ss_pred             CEEEEECCC-CCE--EEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcC
Confidence            999999998 755  3444433344467888999999998888899999988 77644432         1267788888


Q ss_pred             CCCcccccccEEEEec
Q 004969          686 SSKSEIVKVNLLASTD  701 (721)
Q Consensus       686 ~~~~~~v~v~lLASgs  701 (721)
                      ++       +++++..
T Consensus       223 ~G-------~i~v~~~  231 (276)
T 3no2_A          223 NG-------GLYICNW  231 (276)
T ss_dssp             TS-------CEEEEEE
T ss_pred             CC-------CEEEEec
Confidence            88       7777774

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.21  E-value=1.8e-09  Score=114.02  Aligned_cols=200  Identities=11%  Similarity=0.046  Sum_probs=131.6

Q ss_pred             CeEEEEEeCCCCCEEEEEECC---C--eEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC---------
Q 004969          455 RPRQFEYHPSISCLMVFGTLD---G--EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN---------  520 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~D---G--~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D---------  520 (721)
                      .+..++|+| +|++|+.++.+   +  .|.+|++.+++......  . .. +..++|+ ++++.|+.++.+         
T Consensus        60 ~~~~~~~Sp-Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~--~-~~-~~~~~ws-pdg~~l~~~~~~~~~~~~~~~  133 (347)
T 2gop_A           60 NATMPRISP-DGKKIAFMRANEEKKVSEIWVADLETLSSKKILE--A-KN-IRSLEWN-EDSRKLLIVGFKRREDEDFIF  133 (347)
T ss_dssp             SCEEEEECT-TSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEE--E-SE-EEEEEEC-TTSSEEEEEEECCCC------
T ss_pred             cCCCeEECC-CCCEEEEEEeccCCCcceEEEEECCCCceEEEEc--C-CC-ccceeEC-CCCCEEEEEEccCCCcCCcEE
Confidence            377899999 99988887754   3  48888998887665544  2 23 9999998 688888877642         


Q ss_pred             ------------------CeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC------C-cEE
Q 004969          521 ------------------GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS------K-NIA  575 (721)
Q Consensus       521 ------------------GtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D------g-~Ir  575 (721)
                                        ..|.+||+.+++.. .       ....  . .+..+.|+|++ .++++..+      . ...
T Consensus       134 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~-~-------~l~~--~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~  201 (347)
T 2gop_A          134 EDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI-E-------EFEK--P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWD  201 (347)
T ss_dssp             ---CCCC---------CEEEEEEEETTTTEEE-E-------EEEE--E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEE
T ss_pred             EcccceeecCcccccCccceEEEEECCCCeEE-e-------eecC--C-CcccccCCCCe-EEEEEeccccccccccccc
Confidence                              57889999875420 1       1111  2 57889999998 66666543      2 334


Q ss_pred             EEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECC--------CcEEEEECCCCCceeEEEecCCCCeE-E-EEE
Q 004969          576 LYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD--------QDVKLWDLRQKPIQPCYTASSSKGNV-M-VCF  645 (721)
Q Consensus       576 lWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~D--------gtIrIWDlrs~~~~~~~~~~~~~~~v-s-l~f  645 (721)
                      +|.+.+++. ..+.. + ..+..+  +|+| ..++.++.+        ..|.+||  +++.  ......+...+ . +.|
T Consensus       202 l~~~d~~~~-~~l~~-~-~~~~~~--spdg-~~l~~~~~~~~~~~~~~~~l~~~d--~~~~--~~l~~~~~~~~~~~~~~  271 (347)
T 2gop_A          202 IYIWEDGKE-EKMFE-K-VSFYAV--DSDG-ERILLYGKPEKKYMSEHNKLYIYD--GKEV--MGILDEVDRGVGQAKIK  271 (347)
T ss_dssp             EEEEETTEE-EEEEE-E-ESEEEE--EECS-SCEEEEECCSSSCCCSSCEEEEEC--SSCE--EESSTTCCSEEEEEEEE
T ss_pred             EEEeCCCce-EEecc-C-cceeeE--CCCC-CEEEEEEccccCCccccceEEEEC--CCce--EeccccCCcccCCccEE
Confidence            444445543 44443 4 455544  9999 566655543        3688888  4432  22233444555 4 899


Q ss_pred             ecCCCEEEEEeCCCcEEEEEcC-CCc--ccccccCeEEEEECC
Q 004969          646 SPDDHYLLGKGSGTSMFVQSLR-GDP--FRDFNMSILAAYTRP  685 (721)
Q Consensus       646 Spdg~~Lasgs~Dg~I~VWDl~-g~~--l~~~~~~V~~v~fsP  685 (721)
                      + +| ++++++.++.+++| +. +..  +......|..++|+|
T Consensus       272 s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~  311 (347)
T 2gop_A          272 D-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE  311 (347)
T ss_dssp             T-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS
T ss_pred             c-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC
Confidence            9 88 88889999999999 76 332  222355788899998

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.21  E-value=1.5e-08  Score=103.83  Aligned_cols=214  Identities=10%  Similarity=0.063  Sum_probs=152.0

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|.+++++| ++.++++...++.|.+||.. +.... +....+...+.++++. +++.++++...++.|..||... .. 
T Consensus        16 ~~~~i~~d~-~g~l~v~~~~~~~v~~~d~~-~~~~~-~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~~g-~~-   89 (299)
T 2z2n_A           16 GPYGITVSD-KGKVWITQHKANMISCINLD-GKITE-YPLPTPDAKVMCLTIS-SDGEVWFTENAANKIGRITKKG-II-   89 (299)
T ss_dssp             CEEEEEECT-TSCEEEEETTTTEEEEECTT-CCEEE-EECSSTTCCEEEEEEC-TTSCEEEEETTTTEEEEECTTS-CE-
T ss_pred             CccceEECC-CCCEEEEecCCCcEEEEcCC-CCeEE-ecCCcccCceeeEEEC-CCCCEEEeCCCCCeEEEECCCC-cE-
Confidence            589999999 88888776668999999988 65433 3322345779999997 6778777777788999999763 21 


Q ss_pred             ccccccCcceeEec-cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969          535 IRGMHYGAGTVTFD-EFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS  613 (721)
Q Consensus       535 ~~~~~~~~~~~~~~-~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs  613 (721)
                       .       ..... ....+.++++.+++..+++...++.|..||. +++........+...+..+++.++| +++++..
T Consensus        90 -~-------~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~  159 (299)
T 2z2n_A           90 -K-------EYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDN-ALWFTEN  159 (299)
T ss_dssp             -E-------EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS-CEEEEET
T ss_pred             -E-------EEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCC-CEEEEeC
Confidence             1       11111 2345788999888877776667889999998 5654433222245678999999998 7777777


Q ss_pred             CCCcEEEEECCCCCceeEEEecC-CCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCccccc-----ccCeEEEEECCCC
Q 004969          614 FDQDVKLWDLRQKPIQPCYTASS-SKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDF-----NMSILAAYTRPSS  687 (721)
Q Consensus       614 ~DgtIrIWDlrs~~~~~~~~~~~-~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~~~-----~~~V~~v~fsP~~  687 (721)
                      .++.|..||. +++... ..... ...+..++++++|...++...++.|.+|+..+. +..+     ...+..++++|++
T Consensus       160 ~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~~~~~~~~~~~~~~i~~~~~g  236 (299)
T 2z2n_A          160 QNNAIGRITE-SGDITE-FKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITTSGE-ITEFKIPTPNARPHAITAGAGI  236 (299)
T ss_dssp             TTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCC-EEEEECSSTTCCEEEEEECSTT
T ss_pred             CCCEEEEEcC-CCcEEE-eeCCCCCCcceeEEECCCCCEEEEccCCceEEEECCCCc-EEEEECCCCCCCceeEEECCCC
Confidence            7889999999 654332 22332 233458999999998777767889999998543 2222     2468889999998

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.19  E-value=1.9e-09  Score=114.74  Aligned_cols=203  Identities=11%  Similarity=0.040  Sum_probs=137.7

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCC---CCCCeEEEEEeeCCCCEEEEEe--CCCeEEEEEcC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFG---AMNSVLGLCWLKKYPSKLIAGS--DNGSLKLYDIR  529 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~---H~~~V~sl~fsp~d~~~LaSgs--~DGtVrIWDi~  529 (721)
                      .+..++++| ++.++++...++.|.+||..+++....+....   .......+++  .+ ..++.+.  .++.|.+||..
T Consensus        85 ~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~-~~lyv~~~~~~~~v~viD~~  160 (328)
T 3dsm_A           85 SPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YG-KYVYVNCWSYQNRILKIDTE  160 (328)
T ss_dssp             SEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ET-TEEEEEECTTCCEEEEEETT
T ss_pred             CCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--EC-CEEEEEcCCCCCEEEEEECC
Confidence            488999999 67555555489999999999999887776422   1114556776  23 4444444  48999999998


Q ss_pred             CCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC----------CcEEEEECCCCcEEEEEccccCCCeEEE
Q 004969          530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS----------KNIALYDINSGRRLQVFADMHKEHINVV  599 (721)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D----------g~IrlWDl~s~~~v~~l~~~h~~~V~sI  599 (721)
                      +++...          .+........+.+++++..++++..+          +.|.+||..+++....+..........+
T Consensus       161 t~~~~~----------~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~l  230 (328)
T 3dsm_A          161 TDKVVD----------ELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEV  230 (328)
T ss_dssp             TTEEEE----------EEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEE
T ss_pred             CCeEEE----------EEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeE
Confidence            864311          11112234677888887765555444          7899999999988877653123478999


Q ss_pred             EEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecC-CCCeEEEEEec-CCCEEEEE----eCCCcEEEEEcCCCcccc
Q 004969          600 KFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASS-SKGNVMVCFSP-DDHYLLGK----GSGTSMFVQSLRGDPFRD  673 (721)
Q Consensus       600 ~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~-~~~~vsl~fSp-dg~~Lasg----s~Dg~I~VWDl~g~~l~~  673 (721)
                      +|+|++ ..+.++..  .|.+||..+++......... ...+..++++| ++..+++.    ..++.|.+||..|+.+..
T Consensus       231 a~~~d~-~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~  307 (328)
T 3dsm_A          231 QLNGTR-DTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDE  307 (328)
T ss_dssp             EECTTS-CEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEE
T ss_pred             EEecCC-CEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEE
Confidence            999998 56655544  89999998875422111121 23455899999 55555655    568899999999776554


Q ss_pred             c
Q 004969          674 F  674 (721)
Q Consensus       674 ~  674 (721)
                      +
T Consensus       308 i  308 (328)
T 3dsm_A          308 F  308 (328)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.19  E-value=8.6e-10  Score=116.20  Aligned_cols=214  Identities=11%  Similarity=0.040  Sum_probs=147.5

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|.++.|+| ++..++..+.++.++.|   .+.....+.  ++...+.+++|. +++++++++..++.|.+||..+++..
T Consensus         7 ~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~-~~g~l~~~~~~~~~i~~~d~~~~~~~   79 (333)
T 2dg1_A            7 DLPTLFYSG-KSNSAVPIISESELQTI---TAEPWLEIS--KKGLQLEGLNFD-RQGQLFLLDVFEGNIFKINPETKEIK   79 (333)
T ss_dssp             CCCBCCSCG-GGGCSSCCCCGGGSCEE---ECEEEEEEE--SSCCCEEEEEEC-TTSCEEEEETTTCEEEEECTTTCCEE
T ss_pred             ccceeeecC-CccceeEEeecccCccc---ccceeEEEe--ccCccccCcEEC-CCCCEEEEECCCCEEEEEeCCCCcEE
Confidence            366778888 66666666788999999   355555555  556678999998 67888888889999999999875431


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC----CcEEEEECCCCcEEEEEcc-ccCCCeEEEEEcCCCCcEE
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS----KNIALYDINSGRRLQVFAD-MHKEHINVVKFSNHSPSIF  609 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D----g~IrlWDl~s~~~v~~l~~-~h~~~V~sI~fsPdg~~lL  609 (721)
                               .....+...+.++++++++..++++..+    +.|.+||..+++....+.. .+...+..++++|+| +++
T Consensus        80 ---------~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~  149 (333)
T 2dg1_A           80 ---------RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG-GFY  149 (333)
T ss_dssp             ---------EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS-CEE
T ss_pred             ---------EEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCC-CEE
Confidence                     1111234568999999998877766655    6899999988776544431 245678999999998 677


Q ss_pred             EEEEC------CCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEE-eCCCcEEEEEcC--CCcccc-------
Q 004969          610 ATSSF------DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGK-GSGTSMFVQSLR--GDPFRD-------  673 (721)
Q Consensus       610 aSgs~------DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasg-s~Dg~I~VWDl~--g~~l~~-------  673 (721)
                      ++...      .+.|..||..+++.....  ........++|+|+|++++.+ +.++.|++|++.  +..+..       
T Consensus       150 v~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~  227 (333)
T 2dg1_A          150 FTDFRGYSTNPLGGVYYVSPDFRTVTPII--QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPY  227 (333)
T ss_dssp             EEECCCBTTBCCEEEEEECTTSCCEEEEE--EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEE
T ss_pred             EEeccccccCCCceEEEEeCCCCEEEEee--cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEE
Confidence            76653      355666666655433222  112234579999999866544 557899999995  333211       


Q ss_pred             -cc--cCeEEEEECCCC
Q 004969          674 -FN--MSILAAYTRPSS  687 (721)
Q Consensus       674 -~~--~~V~~v~fsP~~  687 (721)
                       +.  ..+..++++|++
T Consensus       228 ~~~~~~~~~~i~~d~~G  244 (333)
T 2dg1_A          228 YFTGHEGPDSCCIDSDD  244 (333)
T ss_dssp             ECCSSSEEEEEEEBTTC
T ss_pred             ecCCCCCCCceEECCCC
Confidence             11  256778899988

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.18  E-value=1.4e-09  Score=110.62  Aligned_cols=197  Identities=9%  Similarity=0.109  Sum_probs=140.5

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .+.+++++| ++.++++.. ++.|.+||..++... .+.. .....+.++++. +++.++++...++.|.+|+..+....
T Consensus        68 ~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~-~~~~~p~~i~~~-~~g~l~v~~~~~~~i~~~~~~~~~~~  142 (270)
T 1rwi_B           68 QPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQT-VLPF-DGLNYPEGLAVD-TQGAVYVADRGNNRVVKLAAGSKTQT  142 (270)
T ss_dssp             SCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCE-ECCC-CSCSSEEEEEEC-TTCCEEEEEGGGTEEEEECTTCCSCE
T ss_pred             CcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEe-eeec-CCcCCCcceEEC-CCCCEEEEECCCCEEEEEECCCceeE
Confidence            478899999 788666665 889999998765433 3321 233578999997 57787777778899999976553321


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF  614 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~  614 (721)
                      ..         .......+.++++++++..+++...++.|.+||...+........ +...+.+++++++| +++++...
T Consensus       143 ~~---------~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~g-~l~v~~~~  211 (270)
T 1rwi_B          143 VL---------PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFT-DITAPWGIAVDEAG-TVYVTEHN  211 (270)
T ss_dssp             EC---------CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCS-SCCSEEEEEECTTC-CEEEEETT
T ss_pred             ee---------ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeeccc-CCCCceEEEECCCC-CEEEEECC
Confidence            10         111223467899988888666666678999999987665443322 44678999999998 78888888


Q ss_pred             CCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004969          615 DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRG  668 (721)
Q Consensus       615 DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g  668 (721)
                      ++.|.+||....... .....+...+..++++++|+.+++...++.|+++++..
T Consensus       212 ~~~v~~~~~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~  264 (270)
T 1rwi_B          212 TNQVVKLLAGSTTST-VLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE  264 (270)
T ss_dssp             TSCEEEECTTCSCCE-ECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred             CCcEEEEcCCCCcce-eeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCC
Confidence            899999999765322 11112223455899999999888888899999999874

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.18  E-value=5e-10  Score=122.59  Aligned_cols=171  Identities=9%  Similarity=0.091  Sum_probs=125.7

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe-----------EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeE
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN-----------IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSL  523 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~-----------~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtV  523 (721)
                      ++..+++++ ...++++|+.++ +++|+++..+           .....   .+.+ |+.|+|   ++++|+++ .+|.|
T Consensus        39 ~~nlLais~-~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~---~lp~-V~~l~f---d~~~L~v~-~~~~l  108 (388)
T 1xip_A           39 SLQNLDISN-SKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK---EIPD-VIFVCF---HGDQVLVS-TRNAL  108 (388)
T ss_dssp             CCBCEEEET-TTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE---ECTT-EEEEEE---ETTEEEEE-ESSEE
T ss_pred             cccEEEEcC-CCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe---eCCC-eeEEEE---CCCEEEEE-cCCcE
Confidence            478899999 889999999986 6679865332           11122   3455 999999   67888888 88999


Q ss_pred             EEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcC
Q 004969          524 KLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSN  603 (721)
Q Consensus       524 rIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsP  603 (721)
                      ++||+.+....         .....+..++.++.+.+.  .++++..||.+.+||+.++....     +...|++++|+|
T Consensus       109 ~v~dv~sl~~~---------~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-----~~~~Vs~v~WSp  172 (388)
T 1xip_A          109 YSLDLEELSEF---------RTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-----LAQNVTSFDVTN  172 (388)
T ss_dssp             EEEESSSTTCE---------EEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-----EEESEEEEEECS
T ss_pred             EEEEchhhhcc---------CccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-----ccCCceEEEEcC
Confidence            99999885421         112233445777766543  48889999999999999887653     345799999999


Q ss_pred             CCCcEEEEEECCCcEEEEECCCCCceeEEEe------c---CCCCeE-EEEEecCCCEEEE
Q 004969          604 HSPSIFATSSFDQDVKLWDLRQKPIQPCYTA------S---SSKGNV-MVCFSPDDHYLLG  654 (721)
Q Consensus       604 dg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~------~---~~~~~v-sl~fSpdg~~Las  654 (721)
                      +|   ++.|..||++++|+...........+      .   +|...+ ++.|.+++.++++
T Consensus       173 kG---~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          173 SQ---LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             SE---EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             Cc---eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            98   67799999999999887653212223      1   234445 9999999999986

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.17  E-value=9.4e-09  Score=106.76  Aligned_cols=222  Identities=11%  Similarity=0.089  Sum_probs=147.2

Q ss_pred             CeEEEEEeCCCCCEEEE-------EECCCeEEEEECCCCeEEEEeec--CCCCCCeEEEEEeeCC-CCEEEEEeCCCeEE
Q 004969          455 RPRQFEYHPSISCLMVF-------GTLDGEIVVVNHENENIVSYIPS--FGAMNSVLGLCWLKKY-PSKLIAGSDNGSLK  524 (721)
Q Consensus       455 ~V~~lafsP~dg~~Las-------Gs~DG~I~IWdl~tg~~i~~l~~--~~H~~~V~sl~fsp~d-~~~LaSgs~DGtVr  524 (721)
                      .+.+++|++ ++.++++       +..++.|.+||..+++.......  .++...+.++++. ++ +.++++. ..+.|.
T Consensus        19 ~~~~~~~~~-~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~-~~~g~l~v~~-~~~~l~   95 (314)
T 1pjx_A           19 GAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCD-RDANQLFVAD-MRLGLL   95 (314)
T ss_dssp             TCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEEC-SSSSEEEEEE-TTTEEE
T ss_pred             CccCceECC-CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEe-cCCCcEEEEE-CCCCEE
Confidence            478899998 8888888       67789999999888876433210  1245678999997 55 5545444 444788


Q ss_pred             EEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC---------------CcEEEEECCCCcEEEEEc
Q 004969          525 LYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS---------------KNIALYDINSGRRLQVFA  589 (721)
Q Consensus       525 IWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D---------------g~IrlWDl~s~~~v~~l~  589 (721)
                      +||.. ++...........    .....+.++++++++..+++...+               +.|..||.. ++......
T Consensus        96 ~~d~~-g~~~~~~~~~~~~----~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~  169 (314)
T 1pjx_A           96 VVQTD-GTFEEIAKKDSEG----RRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT  169 (314)
T ss_dssp             EEETT-SCEEECCSBCTTS----CBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE
T ss_pred             EEeCC-CCEEEEEeccCCC----ccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc
Confidence            99987 4431110000000    011347899999988777766554               567778776 55443332


Q ss_pred             cccCCCeEEEEEc----CCCCcEEEEEECCCcEEEEECC-CCCce---eEEEecCC--CCeEEEEEecCCCEEEEEeCCC
Q 004969          590 DMHKEHINVVKFS----NHSPSIFATSSFDQDVKLWDLR-QKPIQ---PCYTASSS--KGNVMVCFSPDDHYLLGKGSGT  659 (721)
Q Consensus       590 ~~h~~~V~sI~fs----Pdg~~lLaSgs~DgtIrIWDlr-s~~~~---~~~~~~~~--~~~vsl~fSpdg~~Lasgs~Dg  659 (721)
                        +......++|+    |++..++++...++.|.+||.. ++...   ....+..+  ..+..++++++|+++++...++
T Consensus       170 --~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~  247 (314)
T 1pjx_A          170 --AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS  247 (314)
T ss_dssp             --EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred             --CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCC
Confidence              44567889999    9983345555678999999986 33221   12233333  2344899999999999888889


Q ss_pred             cEEEEEcC-CCccccc---ccCeEEEEECCCC
Q 004969          660 SMFVQSLR-GDPFRDF---NMSILAAYTRPSS  687 (721)
Q Consensus       660 ~I~VWDl~-g~~l~~~---~~~V~~v~fsP~~  687 (721)
                      .|.+||.. +..+...   ...+.+++++|++
T Consensus       248 ~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg  279 (314)
T 1pjx_A          248 HIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQT  279 (314)
T ss_dssp             EEEEECTTCBSCSEEEECSSSCEEEEEECTTS
T ss_pred             EEEEEcCCCCcEeEEEeCCCCCceeEEECCCC
Confidence            99999988 5543332   3568899999998

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.15  E-value=2.3e-09  Score=114.89  Aligned_cols=193  Identities=14%  Similarity=0.118  Sum_probs=132.0

Q ss_pred             EEECCCCeEEEEeecCCCCCCeEE-----EEEeeCCCCEEEEEeC-CC--eEEEEEcCCCCCcccccccCcceeEeccCC
Q 004969          480 VVNHENENIVSYIPSFGAMNSVLG-----LCWLKKYPSKLIAGSD-NG--SLKLYDIRHMPPSIRGMHYGAGTVTFDEFD  551 (721)
Q Consensus       480 IWdl~tg~~i~~l~~~~H~~~V~s-----l~fsp~d~~~LaSgs~-DG--tVrIWDi~~~~~~~~~~~~~~~~~~~~~~~  551 (721)
                      .++..+|..+..+.  .|......     .+|+ +++++|+.++. +|  .|.+||+.+++...  +       ...+..
T Consensus        14 ~~~~~~g~~~~~lt--~~~~~~~~~~~~~~~~S-pDg~~l~~~~~~~g~~~l~~~d~~~g~~~~--l-------t~~~~~   81 (388)
T 3pe7_A           14 YQDASTGAQVTRLT--PPDVTCHRNYFYQKCFT-RDGSKLLFGGAFDGPWNYYLLDLNTQVATQ--L-------TEGRGD   81 (388)
T ss_dssp             EECTTTCCEEEECS--CTTSCEECCCTTSCCBC-TTSCEEEEEECTTSSCEEEEEETTTCEEEE--C-------CCSSCB
T ss_pred             EecCCCCcceEEec--CCcccccchhhcCccCC-CCCCEEEEEEcCCCCceEEEEeCCCCceEE--e-------eeCCCC
Confidence            45667777777766  55555555     7898 78898888887 77  47888887754311  1       111112


Q ss_pred             CeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEE--EcCCCCcEEEEE-----------------
Q 004969          552 QLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVK--FSNHSPSIFATS-----------------  612 (721)
Q Consensus       552 ~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~--fsPdg~~lLaSg-----------------  612 (721)
                      .+..+.|+|++..++.++.++.|++||+.+++....+.. +...+....  ++|++ ..++..                 
T Consensus        82 ~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~-~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~~~~~~~~  159 (388)
T 3pe7_A           82 NTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV-PAEWVGYGTWVANSDC-TKLVGIEIRREDWVPLTDWKKFH  159 (388)
T ss_dssp             CSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC-CTTEEEEEEEEECTTS-SEEEEEEEEGGGCCCCCSHHHHH
T ss_pred             CccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec-hhhcccccceeECCCC-CeeccccccCcccccccccchhh
Confidence            234568999999999999999999999999987766664 555554444  48988 566532                 


Q ss_pred             -----ECCCcEEEEECCCCCceeEEEecCCCCeEEEEEec-CCCEEEEEeCC------CcEEEEEcCCCccccc---c--
Q 004969          613 -----SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSP-DDHYLLGKGSG------TSMFVQSLRGDPFRDF---N--  675 (721)
Q Consensus       613 -----s~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSp-dg~~Lasgs~D------g~I~VWDl~g~~l~~~---~--  675 (721)
                           ..+..|.+||+.+++...+...  ......+.|+| ||+.|+....+      ..|+++|..+...+..   .  
T Consensus       160 ~~~~~~~~~~l~~~d~~~g~~~~l~~~--~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~  237 (388)
T 3pe7_A          160 EFYFTKPCCRLMRVDLKTGESTVILQE--NQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEG  237 (388)
T ss_dssp             HHGGGCCCEEEEEEETTTCCEEEEEEE--SSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTT
T ss_pred             hhhccCCcceEEEEECCCCceEEeecC--CccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCC
Confidence                 2346799999999865444322  22234799999 99999877653      3788888875443322   2  


Q ss_pred             cCeEEEEECCCCC
Q 004969          676 MSILAAYTRPSSK  688 (721)
Q Consensus       676 ~~V~~v~fsP~~~  688 (721)
                      ..+....|+|+++
T Consensus       238 ~~~~~~~~spdg~  250 (388)
T 3pe7_A          238 ESCTHEFWVPDGS  250 (388)
T ss_dssp             EEEEEEEECTTSS
T ss_pred             cccccceECCCCC
Confidence            2477789999994

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.13  E-value=5e-08  Score=99.99  Aligned_cols=221  Identities=5%  Similarity=-0.059  Sum_probs=153.7

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .+.++++++ ++.++++...++.|..|+.. ++. ..+........+.++++. +++.++++...++.|.+||. ++...
T Consensus        58 ~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~d~-~g~~~  132 (299)
T 2z2n_A           58 KVMCLTISS-DGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEG-PNGDIWFTEMNGNRIGRITD-DGKIR  132 (299)
T ss_dssp             CEEEEEECT-TSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEEC-TTSCEEEEETTTTEEEEECT-TCCEE
T ss_pred             ceeeEEECC-CCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEEC-CCCCEEEEecCCceEEEECC-CCCEE
Confidence            488999999 88888887778999999986 443 333322345678999997 57777777777889999998 43321


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF  614 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~  614 (721)
                      ...        .......+..+++.+++..+++...++.|..||. +++........+...+..++++++| .++++...
T Consensus       133 ~~~--------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~  202 (299)
T 2z2n_A          133 EYE--------LPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDD-ALWFVEII  202 (299)
T ss_dssp             EEE--------CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS-SEEEEETT
T ss_pred             Eec--------CCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCC-CEEEEccC
Confidence            000        0012245789999888876666656789999999 6665543222245678899999998 67777767


Q ss_pred             CCcEEEEECCCCCceeEEEecC-CCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCccccc-----ccCeEEEEECCCCC
Q 004969          615 DQDVKLWDLRQKPIQPCYTASS-SKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDF-----NMSILAAYTRPSSK  688 (721)
Q Consensus       615 DgtIrIWDlrs~~~~~~~~~~~-~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~~~-----~~~V~~v~fsP~~~  688 (721)
                      ++.|.+||. ++... .+.... ...+..++++++|+.+++...++.|..||..+. +..+     ...+.++.+ +++ 
T Consensus       203 ~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~-~~~~~~~~~~~~~~~i~~-~~g-  277 (299)
T 2z2n_A          203 GNKIGRITT-SGEIT-EFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSNNI-IEEYPIQIKSAEPHGICF-DGE-  277 (299)
T ss_dssp             TTEEEEECT-TCCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETTTE-EEEEECSSSSCCEEEEEE-CSS-
T ss_pred             CceEEEECC-CCcEE-EEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCCCc-eEEEeCCCCCCccceEEe-cCC-
Confidence            889999999 65433 233332 234458999999997777667889999998643 2222     246788888 888 


Q ss_pred             cccccccEEEEec
Q 004969          689 SEIVKVNLLASTD  701 (721)
Q Consensus       689 ~~~v~v~lLASgs  701 (721)
                            .+.++.+
T Consensus       278 ------~l~v~~~  284 (299)
T 2z2n_A          278 ------TIWFAME  284 (299)
T ss_dssp             ------CEEEEET
T ss_pred             ------CEEEEec
Confidence                  6666643

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.12  E-value=9.2e-09  Score=106.77  Aligned_cols=199  Identities=11%  Similarity=0.076  Sum_probs=133.2

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecC-C-CCCCeEEEEEeeCCCCEEEEEeC-------------
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSF-G-AMNSVLGLCWLKKYPSKLIAGSD-------------  519 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~-~-H~~~V~sl~fsp~d~~~LaSgs~-------------  519 (721)
                      .+.+++++| ++.++++...++.|.+||..+|+........ + ....+.++++. ++++++++.+.             
T Consensus        70 ~~~~l~~~~-dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d-~~G~l~vtd~~~g~~~~~~~~~~~  147 (296)
T 3e5z_A           70 HQNGHCLNK-QGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLA-PDGSLWFSDPTYGIDKPEEGYGGE  147 (296)
T ss_dssp             SEEEEEECT-TCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEEC-TTSCEEEEECSHHHHCGGGSSCCC
T ss_pred             CcceeeECC-CCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEEC-CCCCEEEECCcccccccccccccc
Confidence            488999999 8898888777889999999888765443211 1 12356788997 68888887321             


Q ss_pred             ----CCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC-CCcE---EEEEccc
Q 004969          520 ----NGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDIN-SGRR---LQVFADM  591 (721)
Q Consensus       520 ----DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~-s~~~---v~~l~~~  591 (721)
                          .+.|..++.. +..          .....+......++|+|++..+++.+.++.|.+||+. +++.   ...+ ..
T Consensus       148 ~~~~~~~l~~~~~~-g~~----------~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~  215 (296)
T 3e5z_A          148 MELPGRWVFRLAPD-GTL----------SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TV  215 (296)
T ss_dssp             CCSSSCEEEEECTT-SCE----------EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CC
T ss_pred             ccCCCcEEEEECCC-CCE----------EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eC
Confidence                2344444443 211          1112233456889999999988655668899999997 5554   3444 33


Q ss_pred             cCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEE-ecCCCEEEEEeCCCcEEEEEcCCCc
Q 004969          592 HKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCF-SPDDHYLLGKGSGTSMFVQSLRGDP  670 (721)
Q Consensus       592 h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~f-Spdg~~Lasgs~Dg~I~VWDl~g~~  670 (721)
                      +...+.+++++++| +++++.  ++.|.+||.. ++....+  ..+..+.+++| +|+++.|++++.+ .+.-++...+.
T Consensus       216 ~~~~p~~i~~d~~G-~l~v~~--~~~v~~~~~~-g~~~~~~--~~~~~~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~  288 (296)
T 3e5z_A          216 EPGKTDGLRVDAGG-LIWASA--GDGVHVLTPD-GDELGRV--LTPQTTSNLCFGGPEGRTLYMTVST-EFWSIETNVRG  288 (296)
T ss_dssp             SSSCCCSEEEBTTS-CEEEEE--TTEEEEECTT-SCEEEEE--ECSSCCCEEEEESTTSCEEEEEETT-EEEEEECSCCB
T ss_pred             CCCCCCeEEECCCC-CEEEEc--CCeEEEECCC-CCEEEEE--ECCCCceeEEEECCCCCEEEEEcCC-eEEEEEccccc
Confidence            56677889999999 666655  7889999987 4333333  33333458889 5899999988865 55556666555


Q ss_pred             cccc
Q 004969          671 FRDF  674 (721)
Q Consensus       671 l~~~  674 (721)
                      ++.|
T Consensus       289 ~~~~  292 (296)
T 3e5z_A          289 LEHH  292 (296)
T ss_dssp             CCC-
T ss_pred             cccc
Confidence            5544

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.12  E-value=2.6e-08  Score=109.72  Aligned_cols=228  Identities=7%  Similarity=0.030  Sum_probs=154.3

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCC--eEEEEEcCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG--SLKLYDIRHMP  532 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DG--tVrIWDi~~~~  532 (721)
                      .+..++|+| ++.++++...++.|++||..++........  . .... ++|. ++++.|+++..++  .|.+|+...+.
T Consensus       132 ~P~~la~d~-~g~lyv~d~~~~~I~~id~~~g~~~~~~~~--~-~~~~-ia~~-~~g~~l~~~d~~~~~~I~~~d~~~~~  205 (409)
T 3hrp_A          132 YMWGIAAVG-NNTVLAYQRDDPRVRLISVDDNKVTTVHPG--F-KGGK-PAVT-KDKQRVYSIGWEGTHTVYVYMKASGW  205 (409)
T ss_dssp             CEEEEEECS-TTEEEEEETTTTEEEEEETTTTEEEEEEET--C-CBCB-CEEC-TTSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred             CceEEEEeC-CCCEEEEecCCCcEEEEECCCCEEEEeecc--C-CCCc-eeEe-cCCCcEEEEecCCCceEEEEEcCCCc
Confidence            589999999 888888888889999999998877665542  2 2233 8887 6788888888766  78888887643


Q ss_pred             CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEE----EccccCCCe-E-EEEEcCCCC
Q 004969          533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQV----FADMHKEHI-N-VVKFSNHSP  606 (721)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~----l~~~h~~~V-~-sI~fsPdg~  606 (721)
                      .. ...    ..........+.+++++|+++.++++..++.|+.||..++.....    ..+ +...- . .++|+|+++
T Consensus       206 ~~-~~~----g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g-~~~~~P~~~ia~~p~~g  279 (409)
T 3hrp_A          206 AP-TRI----GQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSG-SLGTNPGPYLIYYFVDS  279 (409)
T ss_dssp             CE-EEE----EECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCS-CCCCSSCCEEEEETTTT
T ss_pred             ee-EEe----eeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccC-CCCCCccccEEEeCCCC
Confidence            21 000    000000224467899999777777777788999999987764322    121 22222 3 999999654


Q ss_pred             cEEEEEECCCcEEEEECCCCCceeEEEecC--------------CCCeEEEEEecCCCEEEEEe-CCCcEEEEEcCCCcc
Q 004969          607 SIFATSSFDQDVKLWDLRQKPIQPCYTASS--------------SKGNVMVCFSPDDHYLLGKG-SGTSMFVQSLRGDPF  671 (721)
Q Consensus       607 ~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~--------------~~~~vsl~fSpdg~~Lasgs-~Dg~I~VWDl~g~~l  671 (721)
                      .++++-..++.|+.||....  ........              -..+..++++|+|+++++-. .++.|+.|++....+
T Consensus       280 ~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v  357 (409)
T 3hrp_A          280 NFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV  357 (409)
T ss_dssp             EEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE
T ss_pred             EEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE
Confidence            78888888899999998754  21221111              12355899999999777777 788999999542222


Q ss_pred             ccc------------------ccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          672 RDF------------------NMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       672 ~~~------------------~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      ..+                  -.....++++|++       .++++....
T Consensus       358 ~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g-------~lyVad~~n  400 (409)
T 3hrp_A          358 STVAGQVDVASQIDGTPLEATFNYPYDICYDGEG-------GYWIAEAWG  400 (409)
T ss_dssp             EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSS-------EEEEEESTT
T ss_pred             EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCC-------CEEEEECCC
Confidence            211                  1257889999988       777766544

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.11  E-value=2e-09  Score=126.36  Aligned_cols=215  Identities=7%  Similarity=-0.018  Sum_probs=143.0

Q ss_pred             CeEEEEEeCCCCCEEE-----EEECCCeEEEEECCCCeEEEEeecCCCCCCe--EEEEEeeCCCCEEEEEeCCCe-----
Q 004969          455 RPRQFEYHPSISCLMV-----FGTLDGEIVVVNHENENIVSYIPSFGAMNSV--LGLCWLKKYPSKLIAGSDNGS-----  522 (721)
Q Consensus       455 ~V~~lafsP~dg~~La-----sGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V--~sl~fsp~d~~~LaSgs~DGt-----  522 (721)
                      .+.+++||| ||++||     .|+.+.+|++||+.+|+.+.  .  .+...+  .+++|+ ++++.|+.++.|..     
T Consensus       122 ~~~~~~~SP-DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~--~~~~~~~~~~~~ws-pDg~~l~~~~~d~~~~~~~  195 (695)
T 2bkl_A          122 SLGTWAVSW-DGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--V--DVIEGGKYATPKWT-PDSKGFYYEWLPTDPSIKV  195 (695)
T ss_dssp             EEEEEEECT-TSSEEEEEEEETTCSCCEEEEEETTTCCBCS--S--CCBSCCTTCCCEEC-TTSSEEEEEECCCCTTSCG
T ss_pred             EEEEEEECC-CCCEEEEEECCCCCceEEEEEEECCCCCCcC--C--cccCcccccceEEe-cCCCEEEEEEecCCCCCcc
Confidence            588999999 999998     44455789999999987641  1  122222  678998 78899999988776     


Q ss_pred             --------EEEEEcCCCCCcccccccCcceeEec---cCCCeEEEEEecCCCEEEEEeCCC----cEEEEECCCCcEEEE
Q 004969          523 --------LKLYDIRHMPPSIRGMHYGAGTVTFD---EFDQLTSVHVNSMDELFLASGYSK----NIALYDINSGRRLQV  587 (721)
Q Consensus       523 --------VrIWDi~~~~~~~~~~~~~~~~~~~~---~~~~V~sv~~sp~~~~lls~g~Dg----~IrlWDl~s~~~v~~  587 (721)
                              |++|++.++....        ...+.   +...+.++.|+|+|..++.++.++    .|++||..+++.. .
T Consensus       196 ~~~~~~~~v~~~~l~t~~~~~--------~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~  266 (695)
T 2bkl_A          196 DERPGYTTIRYHTLGTEPSKD--------TVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-L  266 (695)
T ss_dssp             GGGGGGCEEEEEETTSCGGGC--------EEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-E
T ss_pred             ccCCCCCEEEEEECCCCchhc--------eEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-E
Confidence                    9999998865310        11111   224578999999999998887655    6777876666543 3


Q ss_pred             EccccCCCeEEEEEcCCCCcEEEEEE---CCCcEEEEECCCCCcee-EEEecCC-CCeE-EEEEecCCCEEEEEeCCCcE
Q 004969          588 FADMHKEHINVVKFSNHSPSIFATSS---FDQDVKLWDLRQKPIQP-CYTASSS-KGNV-MVCFSPDDHYLLGKGSGTSM  661 (721)
Q Consensus       588 l~~~h~~~V~sI~fsPdg~~lLaSgs---~DgtIrIWDlrs~~~~~-~~~~~~~-~~~v-sl~fSpdg~~Lasgs~Dg~I  661 (721)
                      +.. +...+....+ ++|. +++++.   .++.|.+||+.++.... ...+..+ ...+ .++|+ ++.++++...|+..
T Consensus       267 l~~-~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~  342 (695)
T 2bkl_A          267 LVK-GVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATS  342 (695)
T ss_dssp             EEE-CSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEE
T ss_pred             eec-CCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEE
Confidence            433 5556666666 6774 555544   25889999998764311 1122222 3334 67888 77788888889887


Q ss_pred             EEEEc--CCCccccc----ccCeEEEEECCCCC
Q 004969          662 FVQSL--RGDPFRDF----NMSILAAYTRPSSK  688 (721)
Q Consensus       662 ~VWDl--~g~~l~~~----~~~V~~v~fsP~~~  688 (721)
                      ++|.+  .|...+..    ...+..++++|+++
T Consensus       343 ~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~  375 (695)
T 2bkl_A          343 EVRVATLKGKPVRTVQLPGVGAASNLMGLEDLD  375 (695)
T ss_dssp             EEEEEETTCCEEEECCCSSSSEECCCBSCTTCS
T ss_pred             EEEEEeCCCCeeEEecCCCCeEEEEeecCCCCC
Confidence            77754  45433322    33466677788773

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.10  E-value=1.7e-08  Score=116.13  Aligned_cols=191  Identities=12%  Similarity=0.087  Sum_probs=145.2

Q ss_pred             CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcC--CCCCcccccccCc
Q 004969          465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIR--HMPPSIRGMHYGA  542 (721)
Q Consensus       465 dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~--~~~~~~~~~~~~~  542 (721)
                      .+.++++...+++|.++|..+++.+..+..   ...+..+.|+ ++++++++++.|+.|.+||+.  +.+. +       
T Consensus       166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~---g~~p~~v~~S-pDGr~lyv~~~dg~V~viD~~~~t~~~-v-------  233 (567)
T 1qks_A          166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDT---GYAVHISRLS-ASGRYLFVIGRDGKVNMIDLWMKEPTT-V-------  233 (567)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEEEEEC---SSCEEEEEEC-TTSCEEEEEETTSEEEEEETTSSSCCE-E-------
T ss_pred             CceEEEEeCCCCeEEEEECCCCeEEEEEeC---CCCccceEEC-CCCCEEEEEcCCCeEEEEECCCCCCcE-e-------
Confidence            445677778899999999999999988863   2357789998 799999999999999999996  4322 1       


Q ss_pred             ceeEeccCCCeEEEEEe----cCCCEEEEEeC-CCcEEEEECCCCcEEEEEccc---------cCC-CeEEEEEcCCCCc
Q 004969          543 GTVTFDEFDQLTSVHVN----SMDELFLASGY-SKNIALYDINSGRRLQVFADM---------HKE-HINVVKFSNHSPS  607 (721)
Q Consensus       543 ~~~~~~~~~~V~sv~~s----p~~~~lls~g~-Dg~IrlWDl~s~~~v~~l~~~---------h~~-~V~sI~fsPdg~~  607 (721)
                        ...........++++    |++.+++++.. +++|.++|..+.+.+..+...         |.. .+..+..+++++.
T Consensus       234 --~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~  311 (567)
T 1qks_A          234 --AEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPE  311 (567)
T ss_dssp             --EEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSE
T ss_pred             --EEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCE
Confidence              122222235789999    69999988875 699999999999998876521         112 6788999999877


Q ss_pred             EEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEe-CCCcEEEEEcCCC
Q 004969          608 IFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKG-SGTSMFVQSLRGD  669 (721)
Q Consensus       608 lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs-~Dg~I~VWDl~g~  669 (721)
                      ++++...+|.|.++|........+..+......-.+.|+|+|++++++. .++.|.++|+...
T Consensus       312 ~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~  374 (567)
T 1qks_A          312 FIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG  374 (567)
T ss_dssp             EEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             EEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCC
Confidence            7777777899999999876544444444333344789999999987765 5789999999843

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.06  E-value=1.7e-07  Score=95.94  Aligned_cols=215  Identities=7%  Similarity=-0.004  Sum_probs=151.3

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .+.++++.+ ++.+.++...++.|.+||.. ++... +....+...+.++++. +++.++++...++.|..||.. ++..
T Consensus        21 ~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~v~~~d~~-g~~~   95 (300)
T 2qc5_A           21 GPYGITSSE-DGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVS-SLGDIWFTENGANKIGKLSKK-GGFT   95 (300)
T ss_dssp             CEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEEC-TTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred             CcceeeECC-CCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEEC-CCCCEEEEecCCCeEEEECCC-CCeE
Confidence            589999999 88888877778999999988 65543 3332444678999987 677777777778899999987 3321


Q ss_pred             ccccccCcceeEec-cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969          535 IRGMHYGAGTVTFD-EFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS  613 (721)
Q Consensus       535 ~~~~~~~~~~~~~~-~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs  613 (721)
                      .         .... ....+.++++.+++..+++...++.|..||.. ++............+..+++.++| +++++..
T Consensus        96 ~---------~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~  164 (300)
T 2qc5_A           96 E---------YPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDN-ALWFTEN  164 (300)
T ss_dssp             E---------EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTS-SEEEEET
T ss_pred             E---------ecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCC-CEEEEec
Confidence            0         1111 12457889998888777666667899999988 655432221145678999999998 6777776


Q ss_pred             CCCcEEEEECCCCCceeEEEecCC-CCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCccc----ccccCeEEEEECCCC
Q 004969          614 FDQDVKLWDLRQKPIQPCYTASSS-KGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFR----DFNMSILAAYTRPSS  687 (721)
Q Consensus       614 ~DgtIrIWDlrs~~~~~~~~~~~~-~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~----~~~~~V~~v~fsP~~  687 (721)
                      .++.|..||. ++.... +..... ..+..++++++|...++....+.|.+|+..+....    .....+..+++.|++
T Consensus       165 ~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g  241 (300)
T 2qc5_A          165 QNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGKNS  241 (300)
T ss_dssp             TTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTT
T ss_pred             CCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCcEEEEECCCCCCCceEEEECCCC
Confidence            6889999998 544332 333322 33448999999988887777788999998644221    113457889999998

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.05  E-value=6.4e-08  Score=101.08  Aligned_cols=218  Identities=8%  Similarity=0.087  Sum_probs=142.8

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI  535 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~  535 (721)
                      .-+..|+|.++.++++...++.|..||..++... .+.   ....+.++++. ++++++++ . ++.|.+||..+++...
T Consensus        15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~---~~~~~~~i~~~-~dG~l~v~-~-~~~l~~~d~~~g~~~~   87 (297)
T 3g4e_A           15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT---MDAPVSSVALR-QSGGYVAT-I-GTKFCALNWKEQSAVV   87 (297)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE---CSSCEEEEEEB-TTSSEEEE-E-TTEEEEEETTTTEEEE
T ss_pred             ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe---CCCceEEEEEC-CCCCEEEE-E-CCeEEEEECCCCcEEE
Confidence            5678899966777888888999999999887653 333   34679999998 67775554 4 5689999988754311


Q ss_pred             cccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC---------CcEEEEECCC-CcEEEEEccccCCCeEEEEEcCCC
Q 004969          536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS---------KNIALYDINS-GRRLQVFADMHKEHINVVKFSNHS  605 (721)
Q Consensus       536 ~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D---------g~IrlWDl~s-~~~v~~l~~~h~~~V~sI~fsPdg  605 (721)
                      .......     .....+..++++|++..+++....         ....+|.+.. ++......  +....+.++|+|++
T Consensus        88 ~~~~~~~-----~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~--~~~~pngi~~spdg  160 (297)
T 3g4e_A           88 LATVDND-----KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFD--QVDISNGLDWSLDH  160 (297)
T ss_dssp             EEECCTT-----CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEE--EESBEEEEEECTTS
T ss_pred             EEecCCC-----CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEee--ccccccceEEcCCC
Confidence            1000000     011236889999988866654321         2334554442 44333222  44567899999999


Q ss_pred             CcEEEEEECCCcEEEEEC--CCCCcee---EEEecCCCC-eEEEEEecCCCEEEEEeCCCcEEEEEcC-CCcccccc---
Q 004969          606 PSIFATSSFDQDVKLWDL--RQKPIQP---CYTASSSKG-NVMVCFSPDDHYLLGKGSGTSMFVQSLR-GDPFRDFN---  675 (721)
Q Consensus       606 ~~lLaSgs~DgtIrIWDl--rs~~~~~---~~~~~~~~~-~vsl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~l~~~~---  675 (721)
                      ..++++.+.++.|.+||+  .++....   ...+....+ +-.++++++|++.++...++.|.+||.. |+.+..+.   
T Consensus       161 ~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~  240 (297)
T 3g4e_A          161 KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPV  240 (297)
T ss_dssp             CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSS
T ss_pred             CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCC
Confidence            545566777899999997  4443321   222222222 3379999999988888888899999997 66544432   


Q ss_pred             cCeEEEEEC-CCC
Q 004969          676 MSILAAYTR-PSS  687 (721)
Q Consensus       676 ~~V~~v~fs-P~~  687 (721)
                      ..+.+++|. |++
T Consensus       241 ~~~t~~~f~g~d~  253 (297)
T 3g4e_A          241 DKTTSCCFGGKNY  253 (297)
T ss_dssp             SBEEEEEEESGGG
T ss_pred             CCceEEEEeCCCC
Confidence            468899998 877

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.05  E-value=2.1e-08  Score=108.39  Aligned_cols=186  Identities=12%  Similarity=0.101  Sum_probs=125.7

Q ss_pred             CeEEEEEeCCCCCEEEEEEC--CCeEEEEECCCCeEEEE-eecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTL--DGEIVVVNHENENIVSY-IPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM  531 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~--DG~I~IWdl~tg~~i~~-l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~  531 (721)
                      .+..++++| ++++++++..  +++|.+||+.+++.+.. +...    ....+.+.|.....+++.+.||.+.+|+....
T Consensus       109 ~p~~i~~sp-dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~----~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~  183 (361)
T 2oiz_A          109 YDGLFRQTT-DGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA----GCWSVIPQPNRPRSFMTICGDGGLLTINLGED  183 (361)
T ss_dssp             CGGGEEECT-TSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT----TEEEEEECTTSSSEEEEEETTSSEEEEEECTT
T ss_pred             CcceEEECC-CCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC----CcceeEEcCCCCeeEEEECCCCcEEEEEECCC
Confidence            477899999 9999988864  68999999999998887 6531    12234445444466777777777777776542


Q ss_pred             CCcc-c-----cccc------------C--------cc-eeEecc------------------------CCCeEEEEEec
Q 004969          532 PPSI-R-----GMHY------------G--------AG-TVTFDE------------------------FDQLTSVHVNS  560 (721)
Q Consensus       532 ~~~~-~-----~~~~------------~--------~~-~~~~~~------------------------~~~V~sv~~sp  560 (721)
                      .... .     ....            .        .. ...+..                        ......++++|
T Consensus       184 g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~  263 (361)
T 2oiz_A          184 GKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR  263 (361)
T ss_dssp             SSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET
T ss_pred             CcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec
Confidence            1111 0     0000            0        00 000000                        00111267889


Q ss_pred             CCCEEEEEeC-----------CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCce
Q 004969          561 MDELFLASGY-----------SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQ  629 (721)
Q Consensus       561 ~~~~lls~g~-----------Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~  629 (721)
                      +++.++++..           ++.|.+||+.+++.+..+.. +.  +.+++|+|+| +++++++. ++|.+||..+++.+
T Consensus       264 dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~-~~--p~~ia~spdg-~~l~v~n~-~~v~v~D~~t~~l~  338 (361)
T 2oiz_A          264 ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPG-RD--ALSMTIDQQR-NLMLTLDG-GNVNVYDISQPEPK  338 (361)
T ss_dssp             TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEEC-TT--CCEEEEETTT-TEEEEECS-SCEEEEECSSSSCE
T ss_pred             CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEec-CC--eeEEEECCCC-CEEEEeCC-CeEEEEECCCCcce
Confidence            8888887643           34799999999999999985 44  9999999999 67777776 99999999998444


Q ss_pred             eEEEe-cCCCCeEEEEEecCCC
Q 004969          630 PCYTA-SSSKGNVMVCFSPDDH  650 (721)
Q Consensus       630 ~~~~~-~~~~~~vsl~fSpdg~  650 (721)
                      .+..+ .....+..++++|+|+
T Consensus       339 ~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          339 LLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             EEEEETTSCSSEEEEEECCCSC
T ss_pred             eeEEeccCCCCcEEEEecCCCC
Confidence            45554 3445666899999986

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.03  E-value=6.4e-09  Score=113.82  Aligned_cols=171  Identities=13%  Similarity=0.043  Sum_probs=124.0

Q ss_pred             CeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCccc-ccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 004969          500 SVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIR-GMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYD  578 (721)
Q Consensus       500 ~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~-~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWD  578 (721)
                      ++..++++ +...++++|+.+ .+.+|++........ ............... |+.++|  ++..++++ .++.|++||
T Consensus        39 ~~nlLais-~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDIS-NSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEE-TTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEc-CCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            68889998 678889999988 455699765321000 000011112334455 999999  78888887 889999999


Q ss_pred             CCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCC
Q 004969          579 INSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG  658 (721)
Q Consensus       579 l~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D  658 (721)
                      +++......... |...+.++.+.+.   .+++++.||.+.+||+.++.....     .....+++|||+|  ++.|..|
T Consensus       113 v~sl~~~~~~~~-~~~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~~~~~~-----~~~Vs~v~WSpkG--~~vg~~d  181 (388)
T 1xip_A          113 LEELSEFRTVTS-FEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQL-----AQNVTSFDVTNSQ--LAVLLKD  181 (388)
T ss_dssp             SSSTTCEEEEEE-CSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEEE-----EESEEEEEECSSE--EEEEETT
T ss_pred             chhhhccCccce-eecceeeEEecCC---CEEEEECCCCEEEEEccCCccccc-----cCCceEEEEcCCc--eEEEEcC
Confidence            987665555554 7778888877653   388899999999999998754321     1244599999999  6789999


Q ss_pred             CcEEEEEcCCCcc------------c---ccccCeEEEEECCCC
Q 004969          659 TSMFVQSLRGDPF------------R---DFNMSILAAYTRPSS  687 (721)
Q Consensus       659 g~I~VWDl~g~~l------------~---~~~~~V~~v~fsP~~  687 (721)
                      |.+++|+..+...            .   .+...|.++.|.+++
T Consensus       182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~  225 (388)
T 1xip_A          182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ  225 (388)
T ss_dssp             SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS
T ss_pred             CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCC
Confidence            9999998876553            1   245789999999988

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.03  E-value=1.6e-07  Score=99.75  Aligned_cols=216  Identities=12%  Similarity=0.061  Sum_probs=141.5

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI  535 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~  535 (721)
                      ..+..|+|.++.+++++..++.|..||..+++.. .+.   ....+.+++|. ++++++++. .+ .|.+||..+++...
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~---~~~~v~~i~~~-~dg~l~v~~-~~-gl~~~d~~~g~~~~  123 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA---LPFMGSALAKI-SDSKQLIAS-DD-GLFLRDTATGVLTL  123 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE---CSSCEEEEEEE-ETTEEEEEE-TT-EEEEEETTTCCEEE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE---CCCcceEEEEe-CCCeEEEEE-CC-CEEEEECCCCcEEE
Confidence            5678899955667777778899999999887653 333   23579999998 566666554 44 48999987765311


Q ss_pred             cccccCcceeEeccCCCeEEEEEecCCCEEEEEeC------CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEE
Q 004969          536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY------SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIF  609 (721)
Q Consensus       536 ~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~------Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lL  609 (721)
                        +......   .....+.++++++++..+++...      .+.|..+|  +++... +.. +....+.++|+|++..++
T Consensus       124 --~~~~~~~---~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~-~~~~~~~i~~s~dg~~ly  194 (326)
T 2ghs_A          124 --HAELESD---LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFA-DISIPNSICFSPDGTTGY  194 (326)
T ss_dssp             --EECSSTT---CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEE-EESSEEEEEECTTSCEEE
T ss_pred             --EeeCCCC---CCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeC-CCcccCCeEEcCCCCEEE
Confidence              1000000   01124788999999886665432      24566666  455433 322 345678999999994345


Q ss_pred             EEEECCCcEEEEECC--CC-Cce---eEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCccccc---ccCeE
Q 004969          610 ATSSFDQDVKLWDLR--QK-PIQ---PCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDF---NMSIL  679 (721)
Q Consensus       610 aSgs~DgtIrIWDlr--s~-~~~---~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~~~---~~~V~  679 (721)
                      ++.+.++.|.+||+.  ++ ...   ....+....... .++++++|.+.++...++.|.+|+..++.+..+   ...+.
T Consensus       195 v~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g~~~~~i~~~~~~~~  274 (326)
T 2ghs_A          195 FVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVPGKQTT  274 (326)
T ss_dssp             EEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEECSCSBEE
T ss_pred             EEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCCCEEEEEECCCCCcE
Confidence            555667899999986  44 321   122232222333 799999999888877778999999877654443   23588


Q ss_pred             EEEEC-CCC
Q 004969          680 AAYTR-PSS  687 (721)
Q Consensus       680 ~v~fs-P~~  687 (721)
                      +++|. |++
T Consensus       275 ~~af~g~d~  283 (326)
T 2ghs_A          275 CPAFIGPDA  283 (326)
T ss_dssp             EEEEESTTS
T ss_pred             EEEEecCCC
Confidence            89998 887

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.02  E-value=1.5e-08  Score=119.02  Aligned_cols=179  Identities=6%  Similarity=-0.007  Sum_probs=119.9

Q ss_pred             CCCCCeEEEEEeeCCCCEEEEEeCCC-----eEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC
Q 004969          496 GAMNSVLGLCWLKKYPSKLIAGSDNG-----SLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY  570 (721)
Q Consensus       496 ~H~~~V~sl~fsp~d~~~LaSgs~DG-----tVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~  570 (721)
                      +|...+.+++|+ +++++|+.++.++     .|++||+.+++....         ... ...+.+++|+|++..|+.++.
T Consensus       122 ~~~~~~~~~~~S-PDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~---------~~~-~~~~~~~~wspDg~~l~~~~~  190 (710)
T 2xdw_A          122 DGTVALRGYAFS-EDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD---------VLE-RVKFSCMAWTHDGKGMFYNAY  190 (710)
T ss_dssp             TSCEEEEEEEEC-TTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE---------EEE-EECSCCEEECTTSSEEEEEEC
T ss_pred             CCCEEEEEEEEC-CCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc---------ccc-CcccceEEEEeCCCEEEEEEE
Confidence            344568899999 7888888766543     899999998654210         111 112567999999999999987


Q ss_pred             CCc----------------EEEEECCCCcE--EEEEcc-ccCCCeEEEEEcCCCCcEEEEEEC-----CCcEEEEECCC-
Q 004969          571 SKN----------------IALYDINSGRR--LQVFAD-MHKEHINVVKFSNHSPSIFATSSF-----DQDVKLWDLRQ-  625 (721)
Q Consensus       571 Dg~----------------IrlWDl~s~~~--v~~l~~-~h~~~V~sI~fsPdg~~lLaSgs~-----DgtIrIWDlrs-  625 (721)
                      ++.                |++|++.+++.  ...+.. .|...+..+.|+|+| +.++.++.     +..|++||+.+ 
T Consensus       191 ~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~~l~~~d~~~~  269 (710)
T 2xdw_A          191 PQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDG-RYVLLSIREGCDPVNRLWYCDLQQE  269 (710)
T ss_dssp             CCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS-CEEEEEEECSSSSCCEEEEEEGGGS
T ss_pred             CCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCC-CEEEEEEEccCCCccEEEEEECccc
Confidence            765                99999998762  233332 145668899999999 56655543     56899999976 


Q ss_pred             -----CCceeEEEecCCCCeEEEEEecCCCEEEEEeCCC----cEEEEEcCCC------ccccccc--CeEEEEECCCC
Q 004969          626 -----KPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGT----SMFVQSLRGD------PFRDFNM--SILAAYTRPSS  687 (721)
Q Consensus       626 -----~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg----~I~VWDl~g~------~l~~~~~--~V~~v~fsP~~  687 (721)
                           +.. ....+..+.......|+|+|..|+..+..+    .|.+||+.+.      .+..+..  .+..+.|+|++
T Consensus       270 ~~~~~~~~-~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  347 (710)
T 2xdw_A          270 SNGITGIL-KWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSN  347 (710)
T ss_dssp             SSSSCSSC-CCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTT
T ss_pred             ccccCCcc-ceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCC
Confidence                 421 122233333333346899999887766533    5999998742      2333322  56678888776

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.01  E-value=2.1e-07  Score=95.35  Aligned_cols=214  Identities=5%  Similarity=-0.034  Sum_probs=148.3

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .+.++++.+ ++.+.++...++.|..||.. ++.. .+........+.++++. +++.++++...++.|..||.. ++..
T Consensus        63 ~~~~i~~~~-~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~~-g~~~  137 (300)
T 2qc5_A           63 KVMCLIVSS-LGDIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSGPYGITEG-LNGDIWFTQLNGDRIGKLTAD-GTIY  137 (300)
T ss_dssp             CEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEEC-STTCEEEEETTTTEEEEECTT-SCEE
T ss_pred             cceeEEECC-CCCEEEEecCCCeEEEECCC-CCeE-EecCCCCCCCCccceEC-CCCCEEEEccCCCeEEEECCC-CCEE
Confidence            588999999 88888877778899999988 6553 33322344678999987 577777777778899999987 3321


Q ss_pred             ccccccCcceeEec-cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969          535 IRGMHYGAGTVTFD-EFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS  613 (721)
Q Consensus       535 ~~~~~~~~~~~~~~-~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs  613 (721)
                      .         .... ....+.++++.+++..+++...++.|..||. +++........+...+..+++.++| +++++..
T Consensus       138 ~---------~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~  206 (300)
T 2qc5_A          138 E---------YDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDG-ALWFVEI  206 (300)
T ss_dssp             E---------EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS-SEEEEET
T ss_pred             E---------ccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCC-CEEEEcc
Confidence            0         0111 2245788999888886665555788999998 5655432221245678999999988 7777776


Q ss_pred             CCCcEEEEECCCCCceeEEEec-CCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCccccc-----ccCeEEEEECCCC
Q 004969          614 FDQDVKLWDLRQKPIQPCYTAS-SSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDF-----NMSILAAYTRPSS  687 (721)
Q Consensus       614 ~DgtIrIWDlrs~~~~~~~~~~-~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~~~-----~~~V~~v~fsP~~  687 (721)
                      ..+.|.+||. ++... ..... ....+..++++++|+..++...++.|..|+..+.. ..+     ...+.+++..|++
T Consensus       207 ~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~-~~~~~~~~~~~~~~i~~~~~g  283 (300)
T 2qc5_A          207 MGNKIGRITT-TGEIS-EYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITNDNTI-QEYQLQTENAEPHGITFGKDG  283 (300)
T ss_dssp             TTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCE-EEEECCSTTCCCCCEEECTTS
T ss_pred             CCCEEEEEcC-CCcEE-EEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCCCcE-EEEECCccCCccceeEeCCCC
Confidence            7788999998 44332 22233 23345589999999977776667899999986432 221     2356777888887

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.99  E-value=8.5e-08  Score=110.23  Aligned_cols=232  Identities=11%  Similarity=0.056  Sum_probs=150.4

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECC--CCeEEEEeecCCCCCCeEEEEEee---CCCCEEEEEe-CCCeEEEEEc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHE--NENIVSYIPSFGAMNSVLGLCWLK---KYPSKLIAGS-DNGSLKLYDI  528 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~--tg~~i~~l~~~~H~~~V~sl~fsp---~d~~~LaSgs-~DGtVrIWDi  528 (721)
                      .+..+.|+| +++++++++.||.|.+||+.  +++.+..+.. +  .....++|++   ++++++++++ .+++|.++|.
T Consensus       198 ~p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G--~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~  273 (567)
T 1qks_A          198 AVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-G--SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDG  273 (567)
T ss_dssp             CEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-C--SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEET
T ss_pred             CccceEECC-CCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-C--CCCceeEEccccCCCCCEEEEEEccCCeEEEEEC
Confidence            477899999 99999999999999999995  8888888763 2  3467899985   5888777766 4599999998


Q ss_pred             CCCCCcccccccCcc---eeEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCC
Q 004969          529 RHMPPSIRGMHYGAG---TVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNH  604 (721)
Q Consensus       529 ~~~~~~~~~~~~~~~---~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPd  604 (721)
                      .+.+.. ........   ...+.....+..+..++++..+++.- .+|.|.++|..+.+...............+.|+|+
T Consensus       274 ~t~~~~-~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pd  352 (567)
T 1qks_A          274 ETLEPK-KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGS  352 (567)
T ss_dssp             TTCCEE-EEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTT
T ss_pred             CCCcEE-EEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCC
Confidence            876542 11110000   00001112467788888777766655 46999999998764332222114556778999999


Q ss_pred             CCcEEEEEECCCcEEEEECCCCCceeEEEe-c--CCCC-eEEEEEecCCCEE-EEEe-CCCcEEEEEcCC--C------c
Q 004969          605 SPSIFATSSFDQDVKLWDLRQKPIQPCYTA-S--SSKG-NVMVCFSPDDHYL-LGKG-SGTSMFVQSLRG--D------P  670 (721)
Q Consensus       605 g~~lLaSgs~DgtIrIWDlrs~~~~~~~~~-~--~~~~-~vsl~fSpdg~~L-asgs-~Dg~I~VWDl~g--~------~  670 (721)
                      |..++++...++.|.++|+.+++....... .  .|.+ ... -++|++..+ +++. .++.|.++|...  +      .
T Consensus       353 gr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kv  431 (567)
T 1qks_A          353 HRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKI  431 (567)
T ss_dssp             SCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSE
T ss_pred             CCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEE
Confidence            954555566789999999999865444433 1  1221 212 268875444 4553 468999999873  1      1


Q ss_pred             ccccc---cCeEEEEECCCCCcccc
Q 004969          671 FRDFN---MSILAAYTRPSSKSEIV  692 (721)
Q Consensus       671 l~~~~---~~V~~v~fsP~~~~~~v  692 (721)
                      ++...   ..-..+..||+++..++
T Consensus       432 v~~i~~~g~g~~~i~~~p~~~~l~v  456 (567)
T 1qks_A          432 LDSFPALGGGSLFIKTHPNSQYLYV  456 (567)
T ss_dssp             EEEEECSCSCCCCEECCTTCSEEEE
T ss_pred             EEEEecCCCCCEEEEeCCCCCeEEE
Confidence            12211   12233667898864444

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.98  E-value=3.9e-08  Score=116.31  Aligned_cols=216  Identities=13%  Similarity=0.068  Sum_probs=140.4

Q ss_pred             CeEEEEEeCCCCCEEEEEECC-----CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCe-------
Q 004969          455 RPRQFEYHPSISCLMVFGTLD-----GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGS-------  522 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~D-----G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGt-------  522 (721)
                      .+..++||| ||++||.++.+     .+|++||+.+|+.+....   +...+..++|+ ++ +.|+.++.|+.       
T Consensus       164 ~~~~~~~SP-DG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~---~~~~~~~~~ws-pD-~~l~~~~~~~~~~~~~~~  237 (741)
T 1yr2_A          164 ALDAWAASD-DGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL---KWVKFSGLAWL-GN-DALLYSRFAEPKEGQAFQ  237 (741)
T ss_dssp             EEEEEEECT-TSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE---EEEESCCCEES-TT-SEEEEEECCCC-------
T ss_pred             EEEeEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC---CCceeccEEEE-CC-CEEEEEEecCcccccccc
Confidence            478899999 99999887654     469999999998765321   11223578898 56 77877776654       


Q ss_pred             -------EEEEEcCCCCCcccccccCcceeEecc---CCCeEEEEEecCCCEEEEEeCCC-----cEEEEECCCC--cEE
Q 004969          523 -------LKLYDIRHMPPSIRGMHYGAGTVTFDE---FDQLTSVHVNSMDELFLASGYSK-----NIALYDINSG--RRL  585 (721)
Q Consensus       523 -------VrIWDi~~~~~~~~~~~~~~~~~~~~~---~~~V~sv~~sp~~~~lls~g~Dg-----~IrlWDl~s~--~~v  585 (721)
                             |.+|++.++...        ....+..   ...+.++.|+|+|..++.++.++     .|++||+.++  +..
T Consensus       238 ~~~~~~~v~~~~lgt~~~~--------~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~  309 (741)
T 1yr2_A          238 ALNYNQTVWLHRLGTPQSA--------DQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPV  309 (741)
T ss_dssp             -CCCCCEEEEEETTSCGGG--------CEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCC
T ss_pred             cCCCCCEEEEEECCCCchh--------CEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCccc
Confidence                   889998775421        1112221   12478999999999988877543     7999999877  414


Q ss_pred             EEEccccCCCeEEEEEcCCCCcEEEEEEC----CCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCc
Q 004969          586 QVFADMHKEHINVVKFSNHSPSIFATSSF----DQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTS  660 (721)
Q Consensus       586 ~~l~~~h~~~V~sI~fsPdg~~lLaSgs~----DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~  660 (721)
                      ..+.. +...+.... .|+| ..|+..+.    ++.|.+||+.++.......+..+...+ .++|+ ++.++++...|+.
T Consensus       310 ~~l~~-~~~~~~~~~-~~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~  385 (741)
T 1yr2_A          310 TALIP-DLKAQWDFV-DGVG-DQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAK  385 (741)
T ss_dssp             EEEEC-SSSSCEEEE-EEET-TEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTE
T ss_pred             EEecC-CCCceEEEE-eccC-CEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCE
Confidence            45544 444455543 4888 45555554    345999999874201122224444445 67777 5667778888887


Q ss_pred             EEEE--EcCCCccccc----ccCeEEEEECCCCC
Q 004969          661 MFVQ--SLRGDPFRDF----NMSILAAYTRPSSK  688 (721)
Q Consensus       661 I~VW--Dl~g~~l~~~----~~~V~~v~fsP~~~  688 (721)
                      .+||  ++.|...+..    ...+..+.++|+++
T Consensus       386 ~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~  419 (741)
T 1yr2_A          386 SQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDR  419 (741)
T ss_dssp             EEEEEEETTSCEEEECBCSSSCEEEEEECCBTCS
T ss_pred             EEEEEEeCCCCceeeccCCCCeEEEEeecCCCCC
Confidence            6666  4445543322    34677888999874

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.94  E-value=3.7e-08  Score=103.96  Aligned_cols=180  Identities=13%  Similarity=0.144  Sum_probs=120.8

Q ss_pred             eEEEEEeCCCCCEEEEEECC---------------------------CeEEEEECCCCeEEEEeecCCCCCCeEEEEEee
Q 004969          456 PRQFEYHPSISCLMVFGTLD---------------------------GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLK  508 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~D---------------------------G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp  508 (721)
                      +..++|+| +++.|+.++.+                           ..|.+||+.+++.+..+..   . .+..+.|+ 
T Consensus       106 ~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~---~-~~~~~~~s-  179 (347)
T 2gop_A          106 IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK---P-RFSSGIWH-  179 (347)
T ss_dssp             EEEEEECT-TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE---E-TTCEEEEE-
T ss_pred             ccceeECC-CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC---C-CcccccCC-
Confidence            67899999 88888887632                           5799999998887455553   2 68889998 


Q ss_pred             CCCCEEEEEeCCC-------eEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC--------Cc
Q 004969          509 KYPSKLIAGSDNG-------SLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS--------KN  573 (721)
Q Consensus       509 ~d~~~LaSgs~DG-------tVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D--------g~  573 (721)
                      +++ ++++++.++       ...||.+.+++.  ..+        ..+ ..+..+  +|++..++.++.+        ..
T Consensus       180 pdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~--~~l--------~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~  245 (347)
T 2gop_A          180 RDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE--EKM--------FEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNK  245 (347)
T ss_dssp             TTE-EEEEEECCCSSCCSSCCEEEEEEETTEE--EEE--------EEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCE
T ss_pred             CCe-EEEEEecccccccccccccEEEeCCCce--EEe--------ccC-cceeeE--CCCCCEEEEEEccccCCccccce
Confidence            677 777776542       445555543221  111        111 233443  8999988887753        36


Q ss_pred             EEEEECCCCcEEEEEccccCCCeEE-EEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCE
Q 004969          574 IALYDINSGRRLQVFADMHKEHINV-VKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHY  651 (721)
Q Consensus       574 IrlWDl~s~~~v~~l~~~h~~~V~s-I~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~  651 (721)
                      |.+||  +++......+ +...+.. +.|+ ++  ++++++.++.+++| +.+++.  .....+ .+.+ +++|+|  .+
T Consensus       246 l~~~d--~~~~~~l~~~-~~~~~~~~~~~s-dg--~~~~~~~~~~~~l~-~~~g~~--~~~~~~-~~~v~~~~~s~--~~  313 (347)
T 2gop_A          246 LYIYD--GKEVMGILDE-VDRGVGQAKIKD-GK--VYFTLFEEGSVNLY-IWDGEI--KPIAKG-RHWIMGFDVDE--IV  313 (347)
T ss_dssp             EEEEC--SSCEEESSTT-CCSEEEEEEEET-TE--EEEEEEETTEEEEE-EESSSE--EEEECS-SSEEEEEEESS--SE
T ss_pred             EEEEC--CCceEecccc-CCcccCCccEEc-Cc--EEEEEecCCcEEEE-EcCCce--EEEecC-CCeEEeeeeeC--cE
Confidence            88888  5554433333 6778886 9999 76  88899999999999 875543  222233 4455 899999  67


Q ss_pred             EEEEeCCCcE-EEEEcC
Q 004969          652 LLGKGSGTSM-FVQSLR  667 (721)
Q Consensus       652 Lasgs~Dg~I-~VWDl~  667 (721)
                      +++++.++.. .+|.+.
T Consensus       314 ~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          314 VYLKETATRLRELFTWD  330 (347)
T ss_dssp             EEEEECSSSCCEEEEES
T ss_pred             EEEEcCCCChHHheEeC
Confidence            7777767654 666654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.92  E-value=1.8e-07  Score=97.30  Aligned_cols=187  Identities=8%  Similarity=-0.003  Sum_probs=133.9

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeC-CCeEEEEEcCCCCCc
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD-NGSLKLYDIRHMPPS  534 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~-DGtVrIWDi~~~~~~  534 (721)
                      +.++.++| ++++++  +.++.|+.||. +|+.+..+.. ++...+.++.+. ++++.+++.+. ++.|..+|.. ++..
T Consensus        39 ~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~-~~~~~~~~~~~~-~dG~~lv~~~~~~~~v~~vd~~-Gk~l  111 (276)
T 3no2_A           39 CNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAA-PAGCEMQTARIL-PDGNALVAWCGHPSTILEVNMK-GEVL  111 (276)
T ss_dssp             CCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEEC-CTTCEEEEEEEC-TTSCEEEEEESTTEEEEEECTT-SCEE
T ss_pred             CcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcC-CCCccccccEEC-CCCCEEEEecCCCCEEEEEeCC-CCEE
Confidence            67889999 899888  45788999999 7999988874 223468888887 78899998887 7788777763 3321


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF  614 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~  614 (721)
                      .. .......  ..+......+++.++++.+++...++.|..||.. |+.++++..  ...+.++...++| +++++++.
T Consensus       112 ~~-~~~~~~~--~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~--~~~~~~~~~~~~g-~~~v~~~~  184 (276)
T 3no2_A          112 SK-TEFETGI--ERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKL--SGTPFSSAFLDNG-DCLVACGD  184 (276)
T ss_dssp             EE-EEECCSC--SSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEEC--SSCCCEEEECTTS-CEEEECBT
T ss_pred             EE-EeccCCC--CcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEEC--CCCccceeEcCCC-CEEEEeCC
Confidence            11 1100000  0111234455677889999888889999999998 999999984  3456678888988 78888888


Q ss_pred             CCcEEEEECCCCCceeEEEecC----CCC-eEEEEEecCCCEEEEEe
Q 004969          615 DQDVKLWDLRQKPIQPCYTASS----SKG-NVMVCFSPDDHYLLGKG  656 (721)
Q Consensus       615 DgtIrIWDlrs~~~~~~~~~~~----~~~-~vsl~fSpdg~~Lasgs  656 (721)
                      ++.|..+|..+++..-.+....    ... +..+...++|..+++..
T Consensus       185 ~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          185 AHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             TSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             CCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            8899999999886543333211    111 23788889999888874

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.92  E-value=3.9e-08  Score=115.52  Aligned_cols=217  Identities=11%  Similarity=0.127  Sum_probs=140.3

Q ss_pred             CeEEEEEeCCCCCEEEEE-----ECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCC--------
Q 004969          455 RPRQFEYHPSISCLMVFG-----TLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG--------  521 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasG-----s~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DG--------  521 (721)
                      .+..++||| |++++|-+     +...+|++||+.+|+.+.... .+  ....+++|+  +++.|+.++.+.        
T Consensus       130 ~l~~~~~Sp-Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~--~k~~~~~Ws--Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          130 ALDQLSFSR-DGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KD--VKFSGISWL--GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             EEEEEEECT-TSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EE--EESCCCEEE--TTTEEEEEESSCCC------
T ss_pred             EEEEEEECC-CCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CC--ceeccEEEe--CCCEEEEEEecCcccccccc
Confidence            588899999 99988843     334689999999998654321 01  112467897  778888877774        


Q ss_pred             -----eEEEEEcCCCCCcccccccCcceeEecc----CCCeEEEEEecCCCEEEEEeC----CCcEEEEECCCCc-EEEE
Q 004969          522 -----SLKLYDIRHMPPSIRGMHYGAGTVTFDE----FDQLTSVHVNSMDELFLASGY----SKNIALYDINSGR-RLQV  587 (721)
Q Consensus       522 -----tVrIWDi~~~~~~~~~~~~~~~~~~~~~----~~~V~sv~~sp~~~~lls~g~----Dg~IrlWDl~s~~-~v~~  587 (721)
                           .|++|++.++...        ....+..    ...+.++.|+|++..++....    ...|+++|+.++. ....
T Consensus       204 ~~~~~~v~~~~lgt~~~~--------~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~  275 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQED--------DRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLT  275 (693)
T ss_dssp             -CCCCEEEEEETTSCGGG--------CEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEE
T ss_pred             cCCCcEEEEEECCCCccc--------ceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEE
Confidence                 3999998875431        1111211    223678899999998866543    2589999998764 3445


Q ss_pred             EccccCCCeEEEEEcCCCCcEEEEEECC---CcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCC---cE
Q 004969          588 FADMHKEHINVVKFSNHSPSIFATSSFD---QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGT---SM  661 (721)
Q Consensus       588 l~~~h~~~V~sI~fsPdg~~lLaSgs~D---gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg---~I  661 (721)
                      +.. +....... ++++|..+++++..+   +.|..||+.++.......+..+...+. .|++++++|+....++   .|
T Consensus       276 l~~-~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~-~~s~~g~~lv~~~~~~g~~~l  352 (693)
T 3iuj_A          276 VQG-DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL-TVHSGSGYLFAEYMVDATARV  352 (693)
T ss_dssp             EEC-SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE-EEEEETTEEEEEEEETTEEEE
T ss_pred             EeC-CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE-EEEEECCEEEEEEEECCeeEE
Confidence            554 55555555 666675666666554   679999998865421122222333333 8999999888776544   68


Q ss_pred             EEEEcCCCccccc----ccCeEEEEECCCCC
Q 004969          662 FVQSLRGDPFRDF----NMSILAAYTRPSSK  688 (721)
Q Consensus       662 ~VWDl~g~~l~~~----~~~V~~v~fsP~~~  688 (721)
                      ++|++.|...+..    ...+..+.++|++.
T Consensus       353 ~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~  383 (693)
T 3iuj_A          353 EQFDYEGKRVREVALPGLGSVSGFNGKHDDP  383 (693)
T ss_dssp             EEECTTSCEEEEECCSSSSEEEECCCCTTCS
T ss_pred             EEEECCCCeeEEeecCCCceEEeeecCCCCC
Confidence            8999886554332    23455666777763

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.89  E-value=3.4e-07  Score=94.83  Aligned_cols=195  Identities=9%  Similarity=0.085  Sum_probs=129.4

Q ss_pred             CeEEEEEeCCC-CCEEEEEECCCeEEEEECCCCeEEEE-eecC--CCCCCeEEEEEeeCCCCEEEEEeCC----------
Q 004969          455 RPRQFEYHPSI-SCLMVFGTLDGEIVVVNHENENIVSY-IPSF--GAMNSVLGLCWLKKYPSKLIAGSDN----------  520 (721)
Q Consensus       455 ~V~~lafsP~d-g~~LasGs~DG~I~IWdl~tg~~i~~-l~~~--~H~~~V~sl~fsp~d~~~LaSgs~D----------  520 (721)
                      .+.++++++ + +.++++. ..+.|.+||.. ++.... ....  .....+.++++. ++++++++...+          
T Consensus        72 ~~~~i~~~~-~~g~l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d-~~g~l~v~~~~~~~~~~~~~~~  147 (314)
T 1pjx_A           72 IPAGCQCDR-DANQLFVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFD-YEGNLWITAPAGEVAPADYTRS  147 (314)
T ss_dssp             CEEEEEECS-SSSEEEEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEEC-TTSCEEEEECBCBCTTSCCCBT
T ss_pred             CCceEEEec-CCCcEEEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEEC-CCCCEEEEecCccccccccccc
Confidence            488999999 6 6655544 44579999998 765433 2211  112458899997 677777776655          


Q ss_pred             -----CeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEe----cCCCEEEEEe-CCCcEEEEECC-CCcE-----
Q 004969          521 -----GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVN----SMDELFLASG-YSKNIALYDIN-SGRR-----  584 (721)
Q Consensus       521 -----GtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s----p~~~~lls~g-~Dg~IrlWDl~-s~~~-----  584 (721)
                           +.|..||.. ++.  .        ....+......++++    ++++.++++. .++.|.+||.. +++.     
T Consensus       148 ~~~~~~~l~~~~~~-g~~--~--------~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~  216 (314)
T 1pjx_A          148 MQEKFGSIYCFTTD-GQM--I--------QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKV  216 (314)
T ss_dssp             TSSSCEEEEEECTT-SCE--E--------EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEE
T ss_pred             ccCCCCeEEEECCC-CCE--E--------EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceE
Confidence                 566666654 221  1        111122345788998    8887666665 57899999986 4542     


Q ss_pred             EEEEccccC-CCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEE-eCCCcEE
Q 004969          585 LQVFADMHK-EHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGK-GSGTSMF  662 (721)
Q Consensus       585 v~~l~~~h~-~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasg-s~Dg~I~  662 (721)
                      ...+.+ +. ..+..++++++| +++++...++.|.+||..+++........ ...+.+++|+|+|++|+++ ..++.|.
T Consensus       217 ~~~~~~-~~~~~p~~i~~d~~G-~l~v~~~~~~~i~~~d~~~g~~~~~~~~~-~~~~~~i~~~~dg~~l~v~~~~~~~l~  293 (314)
T 1pjx_A          217 WGHIPG-THEGGADGMDFDEDN-NLLVANWGSSHIEVFGPDGGQPKMRIRCP-FEKPSNLHFKPQTKTIFVTEHENNAVW  293 (314)
T ss_dssp             EEECCC-CSSCEEEEEEEBTTC-CEEEEEETTTEEEEECTTCBSCSEEEECS-SSCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             EEECCC-CCCCCCCceEECCCC-CEEEEEcCCCEEEEEcCCCCcEeEEEeCC-CCCceeEEECCCCCEEEEEeCCCCeEE
Confidence            222322 33 568899999999 78888888899999999866543333322 2344589999999966544 4567899


Q ss_pred             EEEcC
Q 004969          663 VQSLR  667 (721)
Q Consensus       663 VWDl~  667 (721)
                      .|++.
T Consensus       294 ~~~~~  298 (314)
T 1pjx_A          294 KFEWQ  298 (314)
T ss_dssp             EEECS
T ss_pred             EEeCC
Confidence            99986

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.87  E-value=4e-08  Score=115.29  Aligned_cols=194  Identities=11%  Similarity=-0.033  Sum_probs=128.6

Q ss_pred             EEEEEeCCCCCEEEEEECCCe-------------EEEEECCCCe--EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCC
Q 004969          457 RQFEYHPSISCLMVFGTLDGE-------------IVVVNHENEN--IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG  521 (721)
Q Consensus       457 ~~lafsP~dg~~LasGs~DG~-------------I~IWdl~tg~--~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DG  521 (721)
                      ..++|+| |++.|+.++.|..             |++|++.++.  ....+....|...+.++.|+ +++++|+.++.++
T Consensus       171 ~~~~wsp-Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~S-pDG~~l~~~~~~~  248 (695)
T 2bkl_A          171 ATPKWTP-DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLS-RDGKYLFVYILRG  248 (695)
T ss_dssp             CCCEECT-TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEEC-TTSCCEEEEEEET
T ss_pred             cceEEec-CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEEC-CCCCEEEEEEeCC
Confidence            5789999 9999999998876             9999999876  23334434566789999998 6888887777665


Q ss_pred             ----eEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC----CCcEEEEECCCCcE---EEEEcc
Q 004969          522 ----SLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY----SKNIALYDINSGRR---LQVFAD  590 (721)
Q Consensus       522 ----tVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~----Dg~IrlWDl~s~~~---v~~l~~  590 (721)
                          .|.+|+..++..  .        ....+...+....+ ++++ ++..+.    ++.|.+||+.+++.   ...+..
T Consensus       249 ~~~~~l~~~~~~~~~~--~--------~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~  316 (695)
T 2bkl_A          249 WSENDVYWKRPGEKDF--R--------LLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPE  316 (695)
T ss_dssp             TTEEEEEEECTTCSSC--E--------EEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECC
T ss_pred             CCceEEEEEcCCCCce--E--------EeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecC
Confidence                566665443321  1        11122334455556 5666 555553    57899999987753   333332


Q ss_pred             ccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC-CCCceeEEEecCC-CCeE-EEEEecCCCEEEEEe----CCCcEEE
Q 004969          591 MHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLR-QKPIQPCYTASSS-KGNV-MVCFSPDDHYLLGKG----SGTSMFV  663 (721)
Q Consensus       591 ~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlr-s~~~~~~~~~~~~-~~~v-sl~fSpdg~~Lasgs----~Dg~I~V  663 (721)
                      .....+..++|+ ++ .++++...|+..++|.+. ++..  ...+..+ .+.+ .++++|++..++...    ..+.|++
T Consensus       317 ~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g~~--~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~  392 (695)
T 2bkl_A          317 DSSASLLSVSIV-GG-HLSLEYLKDATSEVRVATLKGKP--VRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYK  392 (695)
T ss_dssp             CSSCEEEEEEEE-TT-EEEEEEEETTEEEEEEEETTCCE--EEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEE
T ss_pred             CCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCCCe--eEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEE
Confidence            114567888888 45 789999999998888654 2322  2333333 4444 688899998776433    2468999


Q ss_pred             EEcCC
Q 004969          664 QSLRG  668 (721)
Q Consensus       664 WDl~g  668 (721)
                      ||+.+
T Consensus       393 ~d~~~  397 (695)
T 2bkl_A          393 TSVST  397 (695)
T ss_dssp             EETTT
T ss_pred             EECCC
Confidence            99874

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.82  E-value=4.1e-07  Score=95.19  Aligned_cols=214  Identities=7%  Similarity=0.028  Sum_probs=137.5

Q ss_pred             eEEEEEeCCCCC-EEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          456 PRQFEYHPSISC-LMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       456 V~~lafsP~dg~-~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      +....|+| +++ +++++..++.|..|+. +++. ..+.  .+...+.++++. ++++++++...++.|.+|+.. +...
T Consensus        47 ~egp~~~~-~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~--~~~~~~~gl~~d-~dG~l~v~~~~~~~v~~~~~~-g~~~  119 (305)
T 3dr2_A           47 SEGPAWWE-AQRTLVWSDLVGRRVLGWRE-DGTV-DVLL--DATAFTNGNAVD-AQQRLVHCEHGRRAITRSDAD-GQAH  119 (305)
T ss_dssp             EEEEEEEG-GGTEEEEEETTTTEEEEEET-TSCE-EEEE--ESCSCEEEEEEC-TTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred             ccCCeEeC-CCCEEEEEECCCCEEEEEeC-CCCE-EEEe--CCCCccceeeEC-CCCCEEEEECCCCEEEEECCC-CCEE
Confidence            66789999 776 7778888899999998 4553 3333  344678999997 677766665566889999986 3321


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEE----EeC-------------CCcEEEEECCCCcEEEEEccccCCCeE
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLA----SGY-------------SKNIALYDINSGRRLQVFADMHKEHIN  597 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls----~g~-------------Dg~IrlWDl~s~~~v~~l~~~h~~~V~  597 (721)
                        .+......   .....+.++++++++..+++    +..             .+.|..||..+++.....   .....+
T Consensus       120 --~~~~~~~~---~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---~~~~p~  191 (305)
T 3dr2_A          120 --LLVGRYAG---KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---DLDHPN  191 (305)
T ss_dssp             --EEECEETT---EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---EESSEE
T ss_pred             --EEEeccCC---CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---cCCCCc
Confidence              11000000   01134678899998887775    221             256888888777654433   234568


Q ss_pred             EEEEcCCCCcEEEEEECC------CcEEEEECCCCCcee--EEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004969          598 VVKFSNHSPSIFATSSFD------QDVKLWDLRQKPIQP--CYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGD  669 (721)
Q Consensus       598 sI~fsPdg~~lLaSgs~D------gtIrIWDlrs~~~~~--~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~  669 (721)
                      .++|+|++ ..++.+...      +.|++||+..+....  .+.......+-.++++++|++.++.  .+.|.+|+..|+
T Consensus       192 gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~--~~gv~~~~~~g~  268 (305)
T 3dr2_A          192 GLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS--GTGVCVFDSDGQ  268 (305)
T ss_dssp             EEEECTTS-SEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC--SSEEEEECTTSC
T ss_pred             ceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec--CCcEEEECCCCC
Confidence            89999999 556555554      789999987643111  1111111122268999999965544  345999999877


Q ss_pred             ccccc--ccCeEEEEECCCC
Q 004969          670 PFRDF--NMSILAAYTRPSS  687 (721)
Q Consensus       670 ~l~~~--~~~V~~v~fsP~~  687 (721)
                      .+..+  ...+..++|.|++
T Consensus       269 ~~~~~~~~~~~~~~~f~~d~  288 (305)
T 3dr2_A          269 LLGHIPTPGTASNCTFDQAQ  288 (305)
T ss_dssp             EEEEEECSSCCCEEEECTTS
T ss_pred             EEEEEECCCceeEEEEeCCC
Confidence            65443  2257788999887

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.81  E-value=2.9e-09  Score=102.97  Aligned_cols=100  Identities=22%  Similarity=0.305  Sum_probs=76.8

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhcc
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM  179 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (721)
                      .+|+.++|+++.+..  +.++...--.-+.|+|++|+|..+..++.+.+|.+|+|+ .|.|+.++.+.|..+|+|+.|++
T Consensus        19 ~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~L   95 (176)
T 1a9n_A           19 VRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVN-NNRICRIGEGLDQALPDLTELIL   95 (176)
T ss_dssp             TSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECC-SSCCCEECSCHHHHCTTCCEEEC
T ss_pred             CCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECC-CCcccccCcchhhcCCCCCEEEC
Confidence            367888888877653  233333222567899999999999888899999999999 78899998899999999999999


Q ss_pred             ccccchhhhHHHHHhhcCCcchhh
Q 004969          180 CETRVGNLWTTIAALSKLPSLAEL  203 (721)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~  203 (721)
                      .+|+|..+ ..+..+.++++|++|
T Consensus        96 ~~N~i~~~-~~~~~l~~l~~L~~L  118 (176)
T 1a9n_A           96 TNNSLVEL-GDLDPLASLKSLTYL  118 (176)
T ss_dssp             CSCCCCCG-GGGGGGGGCTTCCEE
T ss_pred             CCCcCCcc-hhhHhhhcCCCCCEE
Confidence            99998754 334456677777555

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.76  E-value=6.6e-07  Score=95.50  Aligned_cols=233  Identities=11%  Similarity=0.050  Sum_probs=145.3

Q ss_pred             CeEEEEEeCCCCCEEEEEE--CCCeEEEEECCCCeEEEEeec-----CCCCCCeEEEEEeeCCCCEEEEEeC-----CCe
Q 004969          455 RPRQFEYHPSISCLMVFGT--LDGEIVVVNHENENIVSYIPS-----FGAMNSVLGLCWLKKYPSKLIAGSD-----NGS  522 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs--~DG~I~IWdl~tg~~i~~l~~-----~~H~~~V~sl~fsp~d~~~LaSgs~-----DGt  522 (721)
                      .|..++++| +++++++..  .+|.++||.+.+++.. .++.     .+|...+.++++. +++.++++-..     ++.
T Consensus        18 ~p~~va~~~-~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d-~~g~L~v~D~g~~~~~~~~   94 (343)
T 2qe8_A           18 APGNITLTP-DGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSD-GNGIVWMLDNGNQSKSVPK   94 (343)
T ss_dssp             CEEEEEECT-TSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEEC-SSSEEEEEECHHHHTSCCE
T ss_pred             CcceEEECC-CCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEc-CCCcEEEEcCCCCcCCCCe
Confidence            488999999 888888864  2343566655556533 3321     2355789999997 55665555433     578


Q ss_pred             EEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe----CCCcEEEEECCCCcEEEEEccccC-----
Q 004969          523 LKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG----YSKNIALYDINSGRRLQVFADMHK-----  593 (721)
Q Consensus       523 VrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g----~Dg~IrlWDl~s~~~v~~l~~~h~-----  593 (721)
                      |.+||+.+++.. .........  ..+...+..++++++++.++.+.    .++.|.+||+.+++..+.+.+ |.     
T Consensus        95 i~~~d~~tg~~~-~~~~~~~~~--~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~-~~~~~~~  170 (343)
T 2qe8_A           95 LVAWDTLNNQLS-RVIYLPPPI--TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQG-YPGIAPE  170 (343)
T ss_dssp             EEEEETTTTEEE-EEEECCTTT--SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTT-CTTTSCC
T ss_pred             EEEEECCCCeEE-EEEECChhh--cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecC-CCccccc
Confidence            999999876531 111000000  01123468899988766665554    468899999998887665532 21     


Q ss_pred             ------------------------CCeEEEEEcCCCCcEEEEEECCC-cEEEEECC---CCCc-----eeEEEecCCC-C
Q 004969          594 ------------------------EHINVVKFSNHSPSIFATSSFDQ-DVKLWDLR---QKPI-----QPCYTASSSK-G  639 (721)
Q Consensus       594 ------------------------~~V~sI~fsPdg~~lLaSgs~Dg-tIrIWDlr---s~~~-----~~~~~~~~~~-~  639 (721)
                                              ..++.|+|+|+| +.++.+..++ .+..++..   .+..     .......++. .
T Consensus       171 ~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg-~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~  249 (343)
T 2qe8_A          171 DIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAEN-EWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPI  249 (343)
T ss_dssp             SCCCEETTEECBEECTTSCEECCCCCEEEEEECTTS-CEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCS
T ss_pred             ccceeECCEEEEeccCCCceeceecccceeEeccCC-CEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCC
Confidence                                    236889999999 6677766655 44444432   1110     0000111111 2


Q ss_pred             eEEEEEecCCCEEEEEeCCCcEEEEEc-CCCccccc-----ccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          640 NVMVCFSPDDHYLLGKGSGTSMFVQSL-RGDPFRDF-----NMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       640 ~vsl~fSpdg~~Lasgs~Dg~I~VWDl-~g~~l~~~-----~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      +..++++++|.++++...++.|.+||. .|.. ...     -..+..+++.|++       .++++.+..
T Consensus       250 pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~-~~~~~~~~~~~p~~va~~~~g-------~l~v~~~~~  311 (343)
T 2qe8_A          250 CDGISIDKDHNIYVGDLAHSAIGVITSADRAY-KLLVTDEKLSWTDSFNFGSDG-------YLYFDCNQL  311 (343)
T ss_dssp             CSCEEECTTCCEEEEEGGGTEEEEEETTTTEE-EEEEECGGGSCEEEEEECTTS-------CEEEEECCG
T ss_pred             CceEEECCCCCEEEEccCCCeEEEEECCCCCE-EEEEECCceecCCeeEECCCC-------cEEEEeCcc
Confidence            226899999999999888999999999 5542 211     2357889999988       777777654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.72  E-value=5.3e-07  Score=106.60  Aligned_cols=195  Identities=9%  Similarity=0.071  Sum_probs=126.7

Q ss_pred             EEEEEeCCCCCEEEEEECCCe--------------EEEEECCCCeE--EEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC
Q 004969          457 RQFEYHPSISCLMVFGTLDGE--------------IVVVNHENENI--VSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN  520 (721)
Q Consensus       457 ~~lafsP~dg~~LasGs~DG~--------------I~IWdl~tg~~--i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D  520 (721)
                      ..++|+| | +.|+.++.++.              |++|++.++..  ...+....+...+.++.|+ +++++|+..+.+
T Consensus       212 ~~~~wsp-D-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~S-pDG~~l~~~~~~  288 (741)
T 1yr2_A          212 SGLAWLG-N-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVS-SDGRWVVITSSE  288 (741)
T ss_dssp             CCCEEST-T-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEEC-TTSCEEEEEEEC
T ss_pred             ccEEEEC-C-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEEC-CCCCEEEEEEEc
Confidence            4688999 7 88888877654              89999987652  3334433444568899998 788888877755


Q ss_pred             C-----eEEEEEcCCCCCc-ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC----CCcEEEEECCCC--cEEEEE
Q 004969          521 G-----SLKLYDIRHMPPS-IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY----SKNIALYDINSG--RRLQVF  588 (721)
Q Consensus       521 G-----tVrIWDi~~~~~~-~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~----Dg~IrlWDl~s~--~~v~~l  588 (721)
                      +     .|.+||+.++... ...+        ..+...+.... +++++.++..+.    .+.|.+||+.++  +....+
T Consensus       289 ~~~~~~~l~~~d~~~~~~~~~~~l--------~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~  359 (741)
T 1yr2_A          289 GTDPVNTVHVARVTNGKIGPVTAL--------IPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVV  359 (741)
T ss_dssp             TTCSCCEEEEEEEETTEECCCEEE--------ECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEE
T ss_pred             cCCCcceEEEEECCCCCCcccEEe--------cCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEe
Confidence            4     8999999875111 1111        11222333333 378888888875    345999999875  333334


Q ss_pred             ccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC-CCCceeEEEecC-CCCeE-EEEEecCCCEEEEEe----CCCcE
Q 004969          589 ADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLR-QKPIQPCYTASS-SKGNV-MVCFSPDDHYLLGKG----SGTSM  661 (721)
Q Consensus       589 ~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlr-s~~~~~~~~~~~-~~~~v-sl~fSpdg~~Lasgs----~Dg~I  661 (721)
                      .. +...+..++|. ++ .++++...|+..+||.+. ++..  ...+.. ..+.+ .++++|++..++...    ..+.|
T Consensus       360 ~~-~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g~~--~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i  434 (741)
T 1yr2_A          360 PE-SKDNLESVGIA-GN-RLFASYIHDAKSQVLAFDLDGKP--AGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATV  434 (741)
T ss_dssp             CC-CSSEEEEEEEE-BT-EEEEEEEETTEEEEEEEETTSCE--EEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEE
T ss_pred             cC-CCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCCCc--eeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEE
Confidence            33 55567778887 34 688999999988877654 2322  233332 23444 788999988665332    24689


Q ss_pred             EEEEcCC
Q 004969          662 FVQSLRG  668 (721)
Q Consensus       662 ~VWDl~g  668 (721)
                      ++||+.+
T Consensus       435 ~~~d~~t  441 (741)
T 1yr2_A          435 LALDPAT  441 (741)
T ss_dssp             EEEETTT
T ss_pred             EEEECCC
Confidence            9999864

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.71  E-value=8.8e-09  Score=111.81  Aligned_cols=185  Identities=14%  Similarity=0.106  Sum_probs=101.8

Q ss_pred             CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcce
Q 004969          465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGT  544 (721)
Q Consensus       465 dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~  544 (721)
                      ++..+++|+.||.|+.||..+|+.+..+..    +.+.+..+. .++..+++++.||.|+.||..+++............
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~----~~~~s~p~~-~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~   82 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE----DPVLQVPTH-VEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPEL   82 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC----CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC----CCceecceE-cCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccc
Confidence            568899999999999999999999988764    334443343 456677888899999999998876532211100000


Q ss_pred             eEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC
Q 004969          545 VTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLR  624 (721)
Q Consensus       545 ~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlr  624 (721)
                      .   ...++.     ..++.+++++.|+.++.||..+|+.++.+.. +.    ...++|++ ..+++++.|+.|+.||.+
T Consensus        83 ~---~~sp~~-----~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~-~~----~~~~~p~~-~~v~~~~~dg~v~a~d~~  148 (369)
T 2hz6_A           83 V---QASPCR-----SSDGILYMGKKQDIWYVIDLLTGEKQQTLSS-AF----ADSLSPST-SLLYLGRTEYTITMYDTK  148 (369)
T ss_dssp             H---TTCSCC----------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSS
T ss_pred             c---ccCceE-----ecCCEEEEEeCCCEEEEEECCCCcEEEEecC-CC----cccccccC-CEEEEEecCCEEEEEECC
Confidence            0   011111     1356777788899999999999999988874 32    23456766 688889999999999999


Q ss_pred             CCCceeEEEecCCCCeEEEEEecCC---CEEEEEeCCCcEEEEEcC-CCcc
Q 004969          625 QKPIQPCYTASSSKGNVMVCFSPDD---HYLLGKGSGTSMFVQSLR-GDPF  671 (721)
Q Consensus       625 s~~~~~~~~~~~~~~~vsl~fSpdg---~~Lasgs~Dg~I~VWDl~-g~~l  671 (721)
                      +++..-.+.....   ...++++++   ..+++++.+|.++.||.+ |+.+
T Consensus       149 tG~~~W~~~~~~~---~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~  196 (369)
T 2hz6_A          149 TRELRWNATYFDY---AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVL  196 (369)
T ss_dssp             SSSCCCEEEEEEE---CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEE
T ss_pred             CCCEEEeEecccc---cCccccCCccccceEEEECCCCEEEEEECCCCcEE
Confidence            9865433332211   122333332   556778889999999986 5543

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.70  E-value=4.6e-06  Score=86.87  Aligned_cols=187  Identities=9%  Similarity=0.022  Sum_probs=123.5

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCC--CCCCeEEEEEeeCCCCEEEEEeCC---------CeE
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFG--AMNSVLGLCWLKKYPSKLIAGSDN---------GSL  523 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~--H~~~V~sl~fsp~d~~~LaSgs~D---------GtV  523 (721)
                      .|.+++++| +++++++ . ++.|.+||..+++.........  ....+.++++. ++++++++....         ..-
T Consensus        55 ~~~~i~~~~-dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d-~dG~l~~~~~~~~~~~~~~~~~~~  130 (297)
T 3g4e_A           55 PVSSVALRQ-SGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVD-PAGRYFAGTMAEETAPAVLERHQG  130 (297)
T ss_dssp             CEEEEEEBT-TSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEEC-TTSCEEEEEEECCSBTTBCCTTCE
T ss_pred             ceEEEEECC-CCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEEC-CCCCEEEecCCcccccccccCCCc
Confidence            588999999 8885554 4 5679999999887654333211  22457889997 677766654322         234


Q ss_pred             EEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEEC--CCCcEE--E---EEccccCCC
Q 004969          524 KLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDI--NSGRRL--Q---VFADMHKEH  595 (721)
Q Consensus       524 rIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl--~s~~~v--~---~l~~~h~~~  595 (721)
                      .+|.+......         ............++|+|++..++.+. .++.|.+||+  .++...  +   .+.. +...
T Consensus       131 ~l~~~d~~g~~---------~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~-~~~~  200 (297)
T 3g4e_A          131 ALYSLFPDHHV---------KKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEK-EEQI  200 (297)
T ss_dssp             EEEEECTTSCE---------EEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCG-GGCE
T ss_pred             EEEEEECCCCE---------EEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCC-CCCC
Confidence            55655432111         11112223457899999998776665 4788999997  455432  2   2222 3457


Q ss_pred             eEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEe-cCCCEEEEEeC
Q 004969          596 INVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFS-PDDHYLLGKGS  657 (721)
Q Consensus       596 V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fS-pdg~~Lasgs~  657 (721)
                      +..+++.++| ++.++....+.|..||..+++.......+ ...+.+++|. |+++.|++++.
T Consensus       201 p~g~~~d~~G-~lwva~~~~~~v~~~d~~tG~~~~~i~~p-~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          201 PDGMCIDAEG-KLWVACYNGGRVIRLDPVTGKRLQTVKLP-VDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             EEEEEEBTTS-CEEEEEETTTEEEEECTTTCCEEEEEECS-SSBEEEEEEESGGGCEEEEEEB
T ss_pred             CCeeEECCCC-CEEEEEcCCCEEEEEcCCCceEEEEEECC-CCCceEEEEeCCCCCEEEEEcC
Confidence            8899999999 78888888889999999887654444333 2345589998 89888776654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.70  E-value=3.4e-06  Score=91.61  Aligned_cols=199  Identities=13%  Similarity=0.046  Sum_probs=129.0

Q ss_pred             CeEEEEEeCCCCCEEEEEEC--CCeEEEEECCCCeEEEE-eecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTL--DGEIVVVNHENENIVSY-IPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM  531 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~--DG~I~IWdl~tg~~i~~-l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~  531 (721)
                      .+..+.|+| ++++++++..  ++.|.++| .+++.+.. +...   ..   +.+.|.....+++.+.||.+.++|. ++
T Consensus       126 ~p~~~~~sp-DG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~---~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g  196 (373)
T 2mad_H          126 YSWMNANTP-NNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP---TC---YHIHPGAPSTFYLLCAQGGLAKTDH-AG  196 (373)
T ss_pred             CccceEECC-CCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC---ce---EEEEeCCCceEEEEcCCCCEEEEEC-CC
Confidence            367899999 9999998874  57899999 99998887 6532   22   3344455667788889999999999 65


Q ss_pred             CCcccccccCcceeEeccCCCe-EEEEEecCCCEEEEEeCCCcEEEEECCCCc--EEEEEcc---------ccCCCeEEE
Q 004969          532 PPSIRGMHYGAGTVTFDEFDQL-TSVHVNSMDELFLASGYSKNIALYDINSGR--RLQVFAD---------MHKEHINVV  599 (721)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~V-~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~--~v~~l~~---------~h~~~V~sI  599 (721)
                      +.......  . .. +....++ ....+.++++.++..+..+.+.+.|+.++.  .+..+.-         ........+
T Consensus       197 ~~~~~~~~--~-~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~  272 (373)
T 2mad_H          197 GAAGAGLV--G-AM-LTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQV  272 (373)
T ss_pred             cEEEEEec--c-cc-ccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeE
Confidence            43211000  0 00 0111121 223455666666666678899999997653  2222210         012334457


Q ss_pred             EEcCCCCcEEEEEE---------CCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCC-EEEEEe-CCCcEEEEEcCC
Q 004969          600 KFSNHSPSIFATSS---------FDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDH-YLLGKG-SGTSMFVQSLRG  668 (721)
Q Consensus       600 ~fsPdg~~lLaSgs---------~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~-~Lasgs-~Dg~I~VWDl~g  668 (721)
                      .++|++..++++..         ..+.|.++|..+.+..  ..+.....+..++|+|||+ .++++. .++.|.+||...
T Consensus       273 ~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv--~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t  350 (373)
T 2mad_H          273 AYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS--SQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA  350 (373)
T ss_pred             EECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEE--EEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence            89999854444433         2357999999988553  3444444566899999999 777776 589999999983

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.63  E-value=1.8e-05  Score=85.91  Aligned_cols=214  Identities=8%  Similarity=-0.081  Sum_probs=135.6

Q ss_pred             EEEEeCCCCCEEEEEE----------CCCeEEEEECCCCeEEEEeecCCC-----CCCeEEEEEeeCCCCEEEEEeC--C
Q 004969          458 QFEYHPSISCLMVFGT----------LDGEIVVVNHENENIVSYIPSFGA-----MNSVLGLCWLKKYPSKLIAGSD--N  520 (721)
Q Consensus       458 ~lafsP~dg~~LasGs----------~DG~I~IWdl~tg~~i~~l~~~~H-----~~~V~sl~fsp~d~~~LaSgs~--D  520 (721)
                      .++++| ++++++++.          .++.|.+||..+.+.+..+...+.     ......+.|+ +++++|++++.  +
T Consensus        70 ~i~~sp-Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~s-pDG~~l~v~n~~~~  147 (373)
T 2mad_H           70 NPVAAH-SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANT-PNNADLLFFQFAAG  147 (373)
T ss_pred             CeEECC-CCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEEC-CCCCEEEEEecCCC
Confidence            799999 888888875          367899999999888887764200     1234578898 78888888774  5


Q ss_pred             CeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCcEEEEEcc----ccCCC
Q 004969          521 GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD-ELFLASGYSKNIALYDINSGRRLQVFAD----MHKEH  595 (721)
Q Consensus       521 GtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~-~~lls~g~Dg~IrlWDl~s~~~v~~l~~----~h~~~  595 (721)
                      +.|.++| .+++.. ..      .  .....   ++.+.+.+ ..+++.+.||.+.++|. +++.+.....    ....+
T Consensus       148 ~~v~viD-~t~~~~-~~------~--i~~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p  213 (373)
T 2mad_H          148 PAVGLVV-QGGSSD-DQ------L--LSSPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQN  213 (373)
T ss_pred             CeEEEEE-CCCCEE-eE------E--cCCCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcc
Confidence            7899999 876531 11      0  11111   13334554 34555667999999999 8877633220    01122


Q ss_pred             -eEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecC-----------CCCeEEEEEecCCCEEEEEeC------
Q 004969          596 -INVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASS-----------SKGNVMVCFSPDDHYLLGKGS------  657 (721)
Q Consensus       596 -V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~-----------~~~~vsl~fSpdg~~Lasgs~------  657 (721)
                       .....+.+++..++++. ..+.+.+.|+.+........+..           ..+...++++|++..++++..      
T Consensus       214 ~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~  292 (373)
T 2mad_H          214 LLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWK  292 (373)
T ss_pred             eeecceeEecCCEEEEEc-CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCccc
Confidence             12345666664444444 67899999997653222222110           111223788999998887653      


Q ss_pred             ----CCcEEEEEcCCCc-cccc--ccCeEEEEECCCCC
Q 004969          658 ----GTSMFVQSLRGDP-FRDF--NMSILAAYTRPSSK  688 (721)
Q Consensus       658 ----Dg~I~VWDl~g~~-l~~~--~~~V~~v~fsP~~~  688 (721)
                          .+.|.++|..... ++..  ......++|+|+++
T Consensus       293 ~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~  330 (373)
T 2mad_H          293 LHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGG  330 (373)
T ss_pred             ccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCC
Confidence                3579999987433 3333  34588999999994

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.63  E-value=9.4e-07  Score=94.31  Aligned_cols=205  Identities=9%  Similarity=-0.004  Sum_probs=131.8

Q ss_pred             CeEEEEEeCCCCCEEEEEEC-----CCeEEEEECCCCeEEEEeecC----CCCCCeEEEEEeeCCCCEEEEEe---CCCe
Q 004969          455 RPRQFEYHPSISCLMVFGTL-----DGEIVVVNHENENIVSYIPSF----GAMNSVLGLCWLKKYPSKLIAGS---DNGS  522 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~-----DG~I~IWdl~tg~~i~~l~~~----~H~~~V~sl~fsp~d~~~LaSgs---~DGt  522 (721)
                      .|..++++| ++.++++-..     ++.|.+||+.+++.+..+...    .+...+..+++.+.++..+++..   .++.
T Consensus        68 ~p~gv~~d~-~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~  146 (343)
T 2qe8_A           68 TVLGIKSDG-NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAA  146 (343)
T ss_dssp             CEEEEEECS-SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCE
T ss_pred             EeeEEEEcC-CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCe
Confidence            699999999 7777766544     578999999999987777542    12345688999744455556655   6889


Q ss_pred             EEEEEcCCCCCcccccccCc------ceeEec---------------cCCCeEEEEEecCCCEEEEEeCCC-cEEEEECC
Q 004969          523 LKLYDIRHMPPSIRGMHYGA------GTVTFD---------------EFDQLTSVHVNSMDELFLASGYSK-NIALYDIN  580 (721)
Q Consensus       523 VrIWDi~~~~~~~~~~~~~~------~~~~~~---------------~~~~V~sv~~sp~~~~lls~g~Dg-~IrlWDl~  580 (721)
                      |.+||..+++. .....++.      ......               ....+..++++|++..++++..++ .+..++..
T Consensus       147 i~v~d~~~g~~-~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~  225 (343)
T 2qe8_A          147 LIRVDLQTGLA-ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSA  225 (343)
T ss_dssp             EEEEETTTCCE-EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHH
T ss_pred             EEEEECCCCCE-EEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHH
Confidence            99999987543 11111100      000000               012368899999998888887655 45555432


Q ss_pred             ---CCc--------EEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCC
Q 004969          581 ---SGR--------RLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDD  649 (721)
Q Consensus       581 ---s~~--------~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg  649 (721)
                         .+.        .+..+ + +......++++++| +++++...++.|.+||..+++...+........+..++|.++|
T Consensus       226 ~~~~~~~~~~~~~~~~~~~-g-~~g~pdgia~d~~G-~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g  302 (343)
T 2qe8_A          226 DLSNLQLTDAELGSKIERY-S-EKPICDGISIDKDH-NIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDG  302 (343)
T ss_dssp             HHTCTTCCHHHHHTTCEEE-E-ECCSCSCEEECTTC-CEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTS
T ss_pred             HhcCCCCChhhhhcceEec-c-cCCCCceEEECCCC-CEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCC
Confidence               111        01111 2 34456779999998 8999988999999999855543333332212334589999999


Q ss_pred             CEEEEEeCCCcEEEE
Q 004969          650 HYLLGKGSGTSMFVQ  664 (721)
Q Consensus       650 ~~Lasgs~Dg~I~VW  664 (721)
                      .++++.+..+.+.+|
T Consensus       303 ~l~v~~~~~~~~~~f  317 (343)
T 2qe8_A          303 YLYFDCNQLHHSAPL  317 (343)
T ss_dssp             CEEEEECCGGGSGGG
T ss_pred             cEEEEeCcccccccc
Confidence            888887755554333

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.62  E-value=2.9e-06  Score=93.27  Aligned_cols=201  Identities=7%  Similarity=0.003  Sum_probs=131.3

Q ss_pred             eEEEEEeCCCCCEEEEEECCC--eEEEEECCCCeEEEEee-c-CCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 004969          456 PRQFEYHPSISCLMVFGTLDG--EIVVVNHENENIVSYIP-S-FGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM  531 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG--~I~IWdl~tg~~i~~l~-~-~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~  531 (721)
                      +. ++|+| +++.++++..++  .|.+|+..++.....+. . ..+...+.+++++|.++ .|+.+..++.|..||..++
T Consensus       174 ~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g-~lyv~d~~~~I~~~d~~~~  250 (409)
T 3hrp_A          174 GK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEE-WLYFVDSNKNFGRFNVKTQ  250 (409)
T ss_dssp             CB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSS-EEEEECTTCEEEEEETTTC
T ss_pred             Cc-eeEec-CCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCC-eEEEEECCCcEEEEECCCC
Confidence            44 89999 888888888766  79999987665443331 1 11345678899984344 4555777899999999875


Q ss_pred             CCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEcccc---------------CCC
Q 004969          532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMH---------------KEH  595 (721)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~v~~l~~~h---------------~~~  595 (721)
                      .............   ....+...++|+|+++.++++. ..+.|+.||....  +..+.+ +               -..
T Consensus       251 ~~~~~~~~~~~g~---~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g-~~~~~g~~dg~~~~~~~~~  324 (409)
T 3hrp_A          251 EVTLIKQLELSGS---LGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCG-SATQKTVQDGLREEALFAQ  324 (409)
T ss_dssp             CEEEEEECCCCSC---CCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEE-CTTCCSCBCEEGGGCBCSS
T ss_pred             CEEEEecccccCC---CCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEe-CCCCCCcCCCcccccEeCC
Confidence            4311100000000   0001123899999766666665 5788999997643  333332 2               245


Q ss_pred             eEEEEEcCCCCcEEEEEE-CCCcEEEEECCCCCceeEEEecC-------------CCCeEEEEEecCCCEEEEEeCCCcE
Q 004969          596 INVVKFSNHSPSIFATSS-FDQDVKLWDLRQKPIQPCYTASS-------------SKGNVMVCFSPDDHYLLGKGSGTSM  661 (721)
Q Consensus       596 V~sI~fsPdg~~lLaSgs-~DgtIrIWDlrs~~~~~~~~~~~-------------~~~~vsl~fSpdg~~Lasgs~Dg~I  661 (721)
                      ...++++|+| +++++-+ .++.|+.||+.++....+.-..+             -..+..++++++|.++++-..++.|
T Consensus       325 P~gia~d~dG-~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~I  403 (409)
T 3hrp_A          325 PNGMTVDEDG-NFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAI  403 (409)
T ss_dssp             EEEEEECTTC-CEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEE
T ss_pred             CeEEEEeCCC-CEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeE
Confidence            7899999999 6888877 88999999987764322221100             1235589999998888888888888


Q ss_pred             EEEEc
Q 004969          662 FVQSL  666 (721)
Q Consensus       662 ~VWDl  666 (721)
                      +.+++
T Consensus       404 r~i~~  408 (409)
T 3hrp_A          404 RKYAV  408 (409)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            88765

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.58  E-value=1.1e-05  Score=83.53  Aligned_cols=195  Identities=9%  Similarity=0.031  Sum_probs=133.4

Q ss_pred             eEEEEEeCCCCCEEEEEEC--CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969          456 PRQFEYHPSISCLMVFGTL--DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~--DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~  533 (721)
                      +..++|+| ++.++++.+.  ++.|.++|+.+++.+..+....+ ....++++.  .+...++.-.++.+.++|..+.+.
T Consensus        23 ~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~-~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v   98 (266)
T 2iwa_A           23 TQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDS-YFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSN   98 (266)
T ss_dssp             EEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTT-CCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEE
T ss_pred             cccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCC-cceEEEEEe--CCEEEEEEecCCEEEEEECCCCcE
Confidence            67899999 6655555443  68999999999999998875332 233456664  334445555789999999988554


Q ss_pred             cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccc-cC---CCeEEEEEcCCCCcEE
Q 004969          534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADM-HK---EHINVVKFSNHSPSIF  609 (721)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~-h~---~~V~sI~fsPdg~~lL  609 (721)
                      . ..       +... ...  ...+++++..++++..++.|.++|..+.+.+..+.-+ +.   ..++.+.|. +| .++
T Consensus        99 ~-~~-------i~~g-~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg-~ly  165 (266)
T 2iwa_A           99 I-KN-------FTHQ-MKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NG-EVW  165 (266)
T ss_dssp             E-EE-------EECC-SSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEE
T ss_pred             E-EE-------EECC-CCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CC-EEE
Confidence            2 11       1111 011  1224457888887777889999999999888877631 11   246788888 66 677


Q ss_pred             EEEECCCcEEEEECCCCCceeEEEecCC------------CCeEEEEEecCCCEEE-EEeCCCcEEEEEcC
Q 004969          610 ATSSFDQDVKLWDLRQKPIQPCYTASSS------------KGNVMVCFSPDDHYLL-GKGSGTSMFVQSLR  667 (721)
Q Consensus       610 aSgs~DgtIrIWDlrs~~~~~~~~~~~~------------~~~vsl~fSpdg~~La-sgs~Dg~I~VWDl~  667 (721)
                      +....++.|.+.|..+++......+.+-            .....++|+|+++.++ ++...+.+++-++.
T Consensus       166 vn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~  236 (266)
T 2iwa_A          166 ANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH  236 (266)
T ss_dssp             EEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred             EecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence            6666789999999999977655554311            2335899999987555 55567888888876

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.56  E-value=1.9e-05  Score=83.46  Aligned_cols=184  Identities=11%  Similarity=0.002  Sum_probs=117.5

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCC-C-CCCeEEEEEeeCCCCEEEEEeC------CCeEEEE
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFG-A-MNSVLGLCWLKKYPSKLIAGSD------NGSLKLY  526 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~-H-~~~V~sl~fsp~d~~~LaSgs~------DGtVrIW  526 (721)
                      .|.+++|+| +++++++. .+ .|.+||..+++......... . ...+.++++. ++++++++...      .+.|..+
T Consensus        91 ~v~~i~~~~-dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d-~~G~l~v~~~~~~~~~~~~~l~~~  166 (326)
T 2ghs_A           91 MGSALAKIS-DSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMH-PSGALWIGTMGRKAETGAGSIYHV  166 (326)
T ss_dssp             CEEEEEEEE-TTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEEC-TTSCEEEEEEETTCCTTCEEEEEE
T ss_pred             cceEEEEeC-CCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEEC-CCCCEEEEeCCCcCCCCceEEEEE
Confidence            488999999 77776654 44 49999998887654332211 1 2468899998 57776665542      2445555


Q ss_pred             EcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECC--CC-c-----EEEEEccccCCCeE
Q 004969          527 DIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDIN--SG-R-----RLQVFADMHKEHIN  597 (721)
Q Consensus       527 Di~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~--s~-~-----~v~~l~~~h~~~V~  597 (721)
                      +  +++.  ..+        .........++|++++..++.+. .++.|.+||+.  ++ +     ....+.. ....+.
T Consensus       167 ~--~g~~--~~~--------~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~-~~~~p~  233 (326)
T 2ghs_A          167 A--KGKV--TKL--------FADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTG-IKGGMD  233 (326)
T ss_dssp             E--TTEE--EEE--------EEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTT-SSSEEE
T ss_pred             e--CCcE--EEe--------eCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCC-CCCCCC
Confidence            5  3221  110        11123457899999998776665 46889999986  55 3     1222322 345678


Q ss_pred             EEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEe-cCCCEEEEEeCC
Q 004969          598 VVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFS-PDDHYLLGKGSG  658 (721)
Q Consensus       598 sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fS-pdg~~Lasgs~D  658 (721)
                      .+++.++| ++.++...++.|.+||.. ++........ ...+.+++|+ ++++.|++++..
T Consensus       234 gi~~d~~G-~lwva~~~~~~v~~~d~~-g~~~~~i~~~-~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          234 GSVCDAEG-HIWNARWGEGAVDRYDTD-GNHIARYEVP-GKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             EEEECTTS-CEEEEEETTTEEEEECTT-CCEEEEEECS-CSBEEEEEEESTTSCEEEEEEBC
T ss_pred             eeEECCCC-CEEEEEeCCCEEEEECCC-CCEEEEEECC-CCCcEEEEEecCCCCEEEEEecC
Confidence            89999999 777777777899999984 4433333322 2234589998 898877665543

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.56  E-value=3.8e-05  Score=78.33  Aligned_cols=217  Identities=8%  Similarity=0.014  Sum_probs=135.8

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .+..++|+|.++.++++-..++.|.+++..++.....+.  .......++++.+..+..+++-...+.|.+++.......
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~--~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~  114 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR--QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR  114 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC--TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEE--CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEE
Confidence            478899999445555566667899999998665443332  223467899997434555556566789999998753321


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC---CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEE
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY---SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFAT  611 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~---Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaS  611 (721)
                      .         ...........++++|+++.++.+..   .+.|..+++.. +....+..........++++|++..++++
T Consensus       115 ~---------~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~~~~P~gia~d~~~~~lyv~  184 (267)
T 1npe_A          115 V---------LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDNLGLPNGLTFDAFSSQLCWV  184 (267)
T ss_dssp             E---------EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECTTCSCEEEEEEETTTTEEEEE
T ss_pred             E---------EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEECCCCCCcEEEEcCCCCEEEEE
Confidence            0         10011134588999997777776664   36888888863 33333321133568899999987566677


Q ss_pred             EECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEe-CCCcEEEEEcC-CCcccccc----cCeEEEEECC
Q 004969          612 SSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKG-SGTSMFVQSLR-GDPFRDFN----MSILAAYTRP  685 (721)
Q Consensus       612 gs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs-~Dg~I~VWDl~-g~~l~~~~----~~V~~v~fsP  685 (721)
                      -...+.|.++|.........  ......+..++..  +..++.+. ..+.|.++|.. ++....+.    .....+++.|
T Consensus       185 d~~~~~I~~~~~~g~~~~~~--~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~  260 (267)
T 1npe_A          185 DAGTHRAECLNPAQPGRRKV--LEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIAL  260 (267)
T ss_dssp             ETTTTEEEEEETTEEEEEEE--EECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred             ECCCCEEEEEecCCCceEEE--ecCCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecC
Confidence            77788999999976432222  2333445566654  45555554 56799999987 44333321    1245566666


Q ss_pred             CC
Q 004969          686 SS  687 (721)
Q Consensus       686 ~~  687 (721)
                      ++
T Consensus       261 ~~  262 (267)
T 1npe_A          261 SQ  262 (267)
T ss_dssp             SC
T ss_pred             cc
Confidence            64

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.54  E-value=3.4e-06  Score=92.04  Aligned_cols=204  Identities=14%  Similarity=0.160  Sum_probs=131.7

Q ss_pred             CeEEEEEeCCCCCEEEEEEC--CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCC-C
Q 004969          455 RPRQFEYHPSISCLMVFGTL--DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH-M  531 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~--DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~-~  531 (721)
                      .+..++|+| ||+++.++..  ++.|.++|+.+++.+.++...+    .. .. .|.....+++.+.||.+.+.++.. +
T Consensus       138 ~P~~~a~sp-DGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g----~~-~~-~P~g~~~~~~~~~DG~~~~v~~~~~g  210 (386)
T 3sjl_D          138 YPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD----CY-HI-FPTAPDTFFMHCRDGSLAKVAFGTEG  210 (386)
T ss_dssp             CGGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EE-EE-EEEETTEEEEEETTSCEEEEECCSSS
T ss_pred             CCceEEEcC-CCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC----cc-ee-ecCCCceeEEECCCCCEEEEECCCCC
Confidence            477899999 8998888764  6899999999999999987532    21 22 356677888999999999999976 3


Q ss_pred             CCcccccccCcceeEeccCCCeE-EEEEecCCCEEEEEeCCCcEEEEECCCCcE--EEEEc---------cccCCCeEEE
Q 004969          532 PPSIRGMHYGAGTVTFDEFDQLT-SVHVNSMDELFLASGYSKNIALYDINSGRR--LQVFA---------DMHKEHINVV  599 (721)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~V~-sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~--v~~l~---------~~h~~~V~sI  599 (721)
                      +.. ....   .... ....++. ...|.+.++.++..+.+|.|.+.|..++..  +..+.         +-.......+
T Consensus       211 ~v~-~~~~---~~~~-~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~  285 (386)
T 3sjl_D          211 TPE-ITHT---EVFH-PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQV  285 (386)
T ss_dssp             CCE-EEEC---CCCS-CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCE
T ss_pred             eEE-Eeec---ceec-cccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCccee
Confidence            331 1110   0000 0111221 235544445555567789999999986542  22221         1012334457


Q ss_pred             EEcCCCCcEEEEEEC---------CCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCC-EEEEEe-CCCcEEEEEcC-
Q 004969          600 KFSNHSPSIFATSSF---------DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDH-YLLGKG-SGTSMFVQSLR-  667 (721)
Q Consensus       600 ~fsPdg~~lLaSgs~---------DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~-~Lasgs-~Dg~I~VWDl~-  667 (721)
                      +++|++.+++++-..         .+.|-+.|+.+++........  ....++++++|++ +|+++. .++.|.++|.. 
T Consensus       286 a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg--~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t  363 (386)
T 3sjl_D          286 AYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG--HEIDSINVSQDEKPLLYALSTGDKTLYIHDAES  363 (386)
T ss_dssp             EEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECSSSSCEEEEEETTTTEEEEEETTT
T ss_pred             eECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC--CCcceEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence            789998555554331         256999999998765444332  2344899999997 677654 58999999987 


Q ss_pred             CCccc
Q 004969          668 GDPFR  672 (721)
Q Consensus       668 g~~l~  672 (721)
                      ++.++
T Consensus       364 ~k~~~  368 (386)
T 3sjl_D          364 GEELR  368 (386)
T ss_dssp             CCEEE
T ss_pred             CcEEE
Confidence            44333

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.48  E-value=3.1e-06  Score=93.70  Aligned_cols=207  Identities=8%  Similarity=-0.063  Sum_probs=130.3

Q ss_pred             eEEEEEeCCCCCEEEEEE----------CCCeEEEEECCCCeEEEEeecCCC-----CCCeEEEEEeeCCCCEEEEEeC-
Q 004969          456 PRQFEYHPSISCLMVFGT----------LDGEIVVVNHENENIVSYIPSFGA-----MNSVLGLCWLKKYPSKLIAGSD-  519 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs----------~DG~I~IWdl~tg~~i~~l~~~~H-----~~~V~sl~fsp~d~~~LaSgs~-  519 (721)
                      + .++++| ++++++++.          .++.|.++|..+++.+..+...+.     ......+.++ +++++++.+.. 
T Consensus       121 P-gia~Sp-Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~s-pDGk~lyV~n~~  197 (426)
T 3c75_H          121 P-HPVAAE-DGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALT-PDNKNLLFYQFS  197 (426)
T ss_dssp             C-EEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEEC-TTSSEEEEEECS
T ss_pred             C-ceEECC-CCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEc-CCCCEEEEEecC
Confidence            5 899999 888777765          467899999999999888764211     1234567887 78888888764 


Q ss_pred             -CCeEEEEEcCCCCCcccccccCcc----------eeEeccCC----------CeE----------------EEEEecCC
Q 004969          520 -NGSLKLYDIRHMPPSIRGMHYGAG----------TVTFDEFD----------QLT----------------SVHVNSMD  562 (721)
Q Consensus       520 -DGtVrIWDi~~~~~~~~~~~~~~~----------~~~~~~~~----------~V~----------------sv~~sp~~  562 (721)
                       ++.|.+.|+.+.+.. ..+.....          .+.+...+          .+.                .+.+.+++
T Consensus       198 ~~~~VsVID~~t~kvv-~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg  276 (426)
T 3c75_H          198 PAPAVGVVDLEGKTFD-RMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRS  276 (426)
T ss_dssp             SSCEEEEEETTTTEEE-EEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTT
T ss_pred             CCCeEEEEECCCCeEE-EEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCC
Confidence             589999999986542 11111000          00110011          111                12345556


Q ss_pred             CEEEEEeCCCcEEEEECCCCcEEE--EEcc---------ccCCCeEEEEEcCCCCcEEEEEE---------CCCcEEEEE
Q 004969          563 ELFLASGYSKNIALYDINSGRRLQ--VFAD---------MHKEHINVVKFSNHSPSIFATSS---------FDQDVKLWD  622 (721)
Q Consensus       563 ~~lls~g~Dg~IrlWDl~s~~~v~--~l~~---------~h~~~V~sI~fsPdg~~lLaSgs---------~DgtIrIWD  622 (721)
                      ..++.....+.+.+.|...+....  .+.-         ........++++|++.+++++..         .++.|.++|
T Consensus       277 ~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID  356 (426)
T 3c75_H          277 GRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLN  356 (426)
T ss_dssp             CEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred             CEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEE
Confidence            666666667778888876543211  1110         00112223789999855555543         135799999


Q ss_pred             CCCCCceeEEEecCCCCeEEEEEecCCC-EEEEEe-CCCcEEEEEcCC
Q 004969          623 LRQKPIQPCYTASSSKGNVMVCFSPDDH-YLLGKG-SGTSMFVQSLRG  668 (721)
Q Consensus       623 lrs~~~~~~~~~~~~~~~vsl~fSpdg~-~Lasgs-~Dg~I~VWDl~g  668 (721)
                      ..+.+.......  ...+..+.|+|||+ +++++. .++.|.|+|+..
T Consensus       357 ~~T~kvv~~I~v--g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t  402 (426)
T 3c75_H          357 AETGERINKIEL--GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAAT  402 (426)
T ss_dssp             TTTCCEEEEEEE--EEEECEEEECCSSSCEEEEEETTTTEEEEEETTT
T ss_pred             CCCCeEEEEEEC--CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCC
Confidence            999865443333  23455899999999 888887 589999999983

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.43  E-value=6.1e-06  Score=91.19  Aligned_cols=195  Identities=13%  Similarity=0.124  Sum_probs=125.4

Q ss_pred             CCCCCE-EEEEECCCeEEEEECCCC----eEEEEeec------CCCCCCeEEEEEeeCCCCEEEEEeCC------CeEEE
Q 004969          463 PSISCL-MVFGTLDGEIVVVNHENE----NIVSYIPS------FGAMNSVLGLCWLKKYPSKLIAGSDN------GSLKL  525 (721)
Q Consensus       463 P~dg~~-LasGs~DG~I~IWdl~tg----~~i~~l~~------~~H~~~V~sl~fsp~d~~~LaSgs~D------GtVrI  525 (721)
                      + +.++ ++.|..+++|.|+|+.+.    +..+++..      .+ ...-..+... +++ .++++..+      |.|.+
T Consensus        93 ~-~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g-~s~Ph~~~~~-pdG-i~Vs~~g~~~g~~~g~v~v  168 (462)
T 2ece_A           93 I-ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSG-YSRLHTVHCG-PDA-IYISALGNEEGEGPGGILM  168 (462)
T ss_dssp             C-CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHC-EEEEEEEEEC-SSC-EEEEEEEETTSCSCCEEEE
T ss_pred             c-cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccC-CCcccceeEC-CCe-EEEEcCCCcCCCCCCeEEE
Confidence            5 4444 555667899999999755    66666630      01 1234456666 566 77777666      78999


Q ss_pred             EEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-------------------CCCcEEEEECCCCcEEE
Q 004969          526 YDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-------------------YSKNIALYDINSGRRLQ  586 (721)
Q Consensus       526 WDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-------------------~Dg~IrlWDl~s~~~v~  586 (721)
                      .|..+.+.. ..+.....     ...--+.+.|+|+++.++++.                   .+.+|.+||+.+++.+.
T Consensus       169 lD~~T~~v~-~~~~~~~~-----~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~  242 (462)
T 2ece_A          169 LDHYSFEPL-GKWEIDRG-----DQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH  242 (462)
T ss_dssp             ECTTTCCEE-EECCSBCT-----TCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE
T ss_pred             EECCCCeEE-EEEccCCC-----CccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee
Confidence            999986542 11110000     011134688899999888874                   36889999999998888


Q ss_pred             EEccc-cCCCeEEEEE--cCCCCcEEEEEE-----CCCcEEEEECCCCCceeEEE--ecC-----------------CCC
Q 004969          587 VFADM-HKEHINVVKF--SNHSPSIFATSS-----FDQDVKLWDLRQKPIQPCYT--ASS-----------------SKG  639 (721)
Q Consensus       587 ~l~~~-h~~~V~sI~f--sPdg~~lLaSgs-----~DgtIrIWDlrs~~~~~~~~--~~~-----------------~~~  639 (721)
                      ++.-+ .......+.|  +|++...++++-     .+++|.+|....+.......  +..                 ...
T Consensus       243 tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~  322 (462)
T 2ece_A          243 SLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPL  322 (462)
T ss_dssp             EEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCC
T ss_pred             EEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCc
Confidence            87742 1234456666  999954555555     67788877665443222221  111                 122


Q ss_pred             eEEEEEecCCCEEEEEeC-CCcEEEEEcC
Q 004969          640 NVMVCFSPDDHYLLGKGS-GTSMFVQSLR  667 (721)
Q Consensus       640 ~vsl~fSpdg~~Lasgs~-Dg~I~VWDl~  667 (721)
                      +..+.+||||++|+++.. .+.|.+||+.
T Consensus       323 pa~I~lS~DGrfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          323 VTDIDISLDDKFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             CCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred             eeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence            336899999999988765 6799999985

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.43  E-value=1.4e-05  Score=83.49  Aligned_cols=190  Identities=11%  Similarity=0.071  Sum_probs=121.1

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeec-CC-CCCCeEEEEEeeCCCCEEEE----EeC---------
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPS-FG-AMNSVLGLCWLKKYPSKLIA----GSD---------  519 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~-~~-H~~~V~sl~fsp~d~~~LaS----gs~---------  519 (721)
                      .+..++++| +++++++...++.|.+|+.. |+....... .+ ....+.++++. +++.+.+|    |..         
T Consensus        87 ~~~gl~~d~-dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d-~dG~l~~td~~~g~~~~~~~~~~~  163 (305)
T 3dr2_A           87 FTNGNAVDA-QQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVA-RDGAIWFTDPPFGLRKPSQGCPAD  163 (305)
T ss_dssp             CEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEEC-TTSCEEEECCSGGGSCGGGSCCCC
T ss_pred             ccceeeECC-CCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEEC-CCCCEEEeCcCCCccccccccccc
Confidence            478899999 88877766667899999986 654332211 11 12456788887 67887776    332         


Q ss_pred             ----CCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC------CcEEEEECCCCcE--EEE
Q 004969          520 ----NGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS------KNIALYDINSGRR--LQV  587 (721)
Q Consensus       520 ----DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D------g~IrlWDl~s~~~--v~~  587 (721)
                          .+.|..||..+++...         ..  .......++|+|++..++++...      +.|++||+..+..  ...
T Consensus       164 ~~~~~~~v~~~d~~~g~~~~---------~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~  232 (305)
T 3dr2_A          164 PELAHHSVYRLPPDGSPLQR---------MA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRH  232 (305)
T ss_dssp             CSSSCEEEEEECSSSCCCEE---------EE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEE
T ss_pred             cccCCCeEEEEcCCCCcEEE---------Ee--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeE
Confidence                2567777765544311         11  22345789999999988877664      6899999876541  122


Q ss_pred             EccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 004969          588 FADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQS  665 (721)
Q Consensus       588 l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWD  665 (721)
                      +..........+++.++| ++.++. .++ |.+||... +....+..  .....+++|+|+++.|..++.+ .++.++
T Consensus       233 ~~~~~~~~pdgi~~d~~G-~lwv~~-~~g-v~~~~~~g-~~~~~~~~--~~~~~~~~f~~d~~~L~it~~~-~l~~~~  303 (305)
T 3dr2_A          233 FASVPDGLPDGFCVDRGG-WLWSSS-GTG-VCVFDSDG-QLLGHIPT--PGTASNCTFDQAQQRLFITGGP-CLWMLP  303 (305)
T ss_dssp             EECCSSSCCCSEEECTTS-CEEECC-SSE-EEEECTTS-CEEEEEEC--SSCCCEEEECTTSCEEEEEETT-EEEEEE
T ss_pred             EEECCCCCCCeEEECCCC-CEEEec-CCc-EEEECCCC-CEEEEEEC--CCceeEEEEeCCCCEEEEEcCC-eEEEEE
Confidence            221123455678999999 555443 444 99999854 33333333  3345588999999998888865 444333

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.42  E-value=1e-05  Score=95.07  Aligned_cols=210  Identities=7%  Similarity=0.036  Sum_probs=128.5

Q ss_pred             CCCeEEEEECCCCeEEEEeecCCCC-----------------------------CCeEEEEEeeCCCCEEEEEeCCCe--
Q 004969          474 LDGEIVVVNHENENIVSYIPSFGAM-----------------------------NSVLGLCWLKKYPSKLIAGSDNGS--  522 (721)
Q Consensus       474 ~DG~I~IWdl~tg~~i~~l~~~~H~-----------------------------~~V~sl~fsp~d~~~LaSgs~DGt--  522 (721)
                      .+|.|+.||..+|+.+..+....+.                             .....+++. ++.+.++.++.++.  
T Consensus       181 ~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d-~~~~~vy~~~~~g~~w  259 (689)
T 1yiq_A          181 VRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYD-PELNLLYIGVGNGSLW  259 (689)
T ss_dssp             CBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEE-TTTTEEEEECCCEESS
T ss_pred             CCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEc-CCCCEEEEeCCCCCcc
Confidence            3789999999999998776531100                             011245666 56678888888764  


Q ss_pred             -----------------EEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCC---EEEEEeCCCcEEEEECCCC
Q 004969          523 -----------------LKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDE---LFLASGYSKNIALYDINSG  582 (721)
Q Consensus       523 -----------------VrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~---~lls~g~Dg~IrlWDl~s~  582 (721)
                                       |..||..+++........+.....+....++.......++.   .++.++.+|.++++|.++|
T Consensus       260 ~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG  339 (689)
T 1yiq_A          260 DPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATG  339 (689)
T ss_dssp             CHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred             ccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCC
Confidence                             99999999876432211111000111111222222222443   5777788999999999999


Q ss_pred             cEEEEEccccCCC--------------------------------------eEEEEEcCCCCcEEEEEEC----------
Q 004969          583 RRLQVFADMHKEH--------------------------------------INVVKFSNHSPSIFATSSF----------  614 (721)
Q Consensus       583 ~~v~~l~~~h~~~--------------------------------------V~sI~fsPdg~~lLaSgs~----------  614 (721)
                      +.+..........                                      -..++|+|+. .++++...          
T Consensus       340 ~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~-~~~yv~~~~~~~~~~~~~  418 (689)
T 1yiq_A          340 ELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDT-GLVYIPAHIMSAYYEHIP  418 (689)
T ss_dssp             CEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTT-TEEEEEEEECCEEEECCS
T ss_pred             CEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCC-CEEEEeccccceeeeecc
Confidence            9885443111001                                      1126888887 46665422          


Q ss_pred             -----------------------------------CCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCC
Q 004969          615 -----------------------------------DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGT  659 (721)
Q Consensus       615 -----------------------------------DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg  659 (721)
                                                         +|.|+.||+.+++..  .....+.......+...+..++.|+.||
T Consensus       419 ~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~--W~~~~~~~~~~g~~~tagglvf~gt~dg  496 (689)
T 1yiq_A          419 EAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAA--WEVPYVTIFNGGTLSTAGNLVFEGSADG  496 (689)
T ss_dssp             SCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEE--EEEEESSSCCCCEEEETTTEEEEECTTS
T ss_pred             ccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeE--eEccCCCCccCccceECCCEEEEECCCC
Confidence                                               377999999998653  3333333333335667888999999999


Q ss_pred             cEEEEEcC-CCcccccccC----eEEEEECCCC
Q 004969          660 SMFVQSLR-GDPFRDFNMS----ILAAYTRPSS  687 (721)
Q Consensus       660 ~I~VWDl~-g~~l~~~~~~----V~~v~fsP~~  687 (721)
                      .++.||.+ |+.+..+...    ...+.|.+++
T Consensus       497 ~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G  529 (689)
T 1yiq_A          497 RVIAYAADTGEKLWEQPAASGVMAAPVTYSVDG  529 (689)
T ss_dssp             EEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred             cEEEEECCCCccceeeeCCCCcccCceEEEECC
Confidence            99999987 7665544321    2235556666

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.37  E-value=2e-05  Score=92.42  Aligned_cols=192  Identities=8%  Similarity=-0.017  Sum_probs=128.0

Q ss_pred             EEEEeCCCCCEEEEEECCC-------------------eEEEEECCCCeEEEEeecCCCC-------CCeEEEEEeeCCC
Q 004969          458 QFEYHPSISCLMVFGTLDG-------------------EIVVVNHENENIVSYIPSFGAM-------NSVLGLCWLKKYP  511 (721)
Q Consensus       458 ~lafsP~dg~~LasGs~DG-------------------~I~IWdl~tg~~i~~l~~~~H~-------~~V~sl~fsp~d~  511 (721)
                      .++++| ++++++.++.++                   .|..+|..+|+.+..++...|.       ....-+... .++
T Consensus       247 ~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~-~dG  324 (677)
T 1kb0_A          247 SMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIK-IAG  324 (677)
T ss_dssp             CEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEE-ETT
T ss_pred             ceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecc-cCC
Confidence            578899 778888887664                   5999999999999888764442       122222322 355


Q ss_pred             ---CEEEEEeCCCeEEEEEcCCCCCcccccccCcc---------eeEe--------------c---cCCCeEEEEEecCC
Q 004969          512 ---SKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAG---------TVTF--------------D---EFDQLTSVHVNSMD  562 (721)
Q Consensus       512 ---~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~---------~~~~--------------~---~~~~V~sv~~sp~~  562 (721)
                         ..++.++.+|.+.++|..+++...........         ...+              .   ....-..++++|+.
T Consensus       325 ~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~  404 (677)
T 1kb0_A          325 KPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT  404 (677)
T ss_dssp             EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT
T ss_pred             cEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC
Confidence               67899999999999999998764322111100         0000              0   00001256788888


Q ss_pred             CEEEEEeC-------------------------------------------CCcEEEEECCCCcEEEEEccccCCCeEEE
Q 004969          563 ELFLASGY-------------------------------------------SKNIALYDINSGRRLQVFADMHKEHINVV  599 (721)
Q Consensus       563 ~~lls~g~-------------------------------------------Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI  599 (721)
                      +.+++...                                           .|.|..||+.+++.+..+.  +...+...
T Consensus       405 ~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~--~~~~~~~g  482 (677)
T 1kb0_A          405 GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE--HVSPWNGG  482 (677)
T ss_dssp             TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE--ESSSCCCC
T ss_pred             CEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC--CCCCCcCc
Confidence            88877543                                           2789999999999999887  44455555


Q ss_pred             EEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEE
Q 004969          600 KFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLG  654 (721)
Q Consensus       600 ~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Las  654 (721)
                      .+...+ .+++.++.||.+++||.++++....+.........-+.|.++|+.+++
T Consensus       483 ~~~~~g-~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~  536 (677)
T 1kb0_A          483 TLTTAG-NVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS  536 (677)
T ss_dssp             EEEETT-TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             ceEeCC-CEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence            566677 578888999999999999997654444433222224778888875543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.36  E-value=2.3e-05  Score=91.89  Aligned_cols=204  Identities=9%  Similarity=0.054  Sum_probs=127.6

Q ss_pred             CEEEEEEC------CCeEEEEECCCCeEEEEeecCCCC------------------------------CCeEEEEEeeCC
Q 004969          467 CLMVFGTL------DGEIVVVNHENENIVSYIPSFGAM------------------------------NSVLGLCWLKKY  510 (721)
Q Consensus       467 ~~LasGs~------DG~I~IWdl~tg~~i~~l~~~~H~------------------------------~~V~sl~fsp~d  510 (721)
                      ..+++++.      +|.|+.||..+|+.+..+......                              .....+++. ++
T Consensus       175 ~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d-~~  253 (677)
T 1kb0_A          175 GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFD-AE  253 (677)
T ss_dssp             TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEE-TT
T ss_pred             CEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEc-CC
Confidence            45555543      799999999999998877642211                              011245665 56


Q ss_pred             CCEEEEEeCCC-------------------eEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCC---CEEEEE
Q 004969          511 PSKLIAGSDNG-------------------SLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD---ELFLAS  568 (721)
Q Consensus       511 ~~~LaSgs~DG-------------------tVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~---~~lls~  568 (721)
                      .+.++.++.++                   +|..+|..+++........+.....+.......-+....++   ..++.+
T Consensus       254 ~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~  333 (677)
T 1kb0_A          254 LNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHA  333 (677)
T ss_dssp             TTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEEC
T ss_pred             CCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEE
Confidence            77888777664                   58999999887643221111100001111112222333356   567788


Q ss_pred             eCCCcEEEEECCCCcEEEEEccccCC----------Ce------------------------EEEEEcCCCCcEEEEEEC
Q 004969          569 GYSKNIALYDINSGRRLQVFADMHKE----------HI------------------------NVVKFSNHSPSIFATSSF  614 (721)
Q Consensus       569 g~Dg~IrlWDl~s~~~v~~l~~~h~~----------~V------------------------~sI~fsPdg~~lLaSgs~  614 (721)
                      +.+|.++++|..+|+.+..+......          .+                        ..++++|++ .++++...
T Consensus       334 ~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~-~~~yv~~~  412 (677)
T 1kb0_A          334 PKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT-GLVYLPAQ  412 (677)
T ss_dssp             CTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT-TEEEEEEE
T ss_pred             CCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC-CEEEEeCh
Confidence            88999999999999998876521111          11                        146889987 46655432


Q ss_pred             -------------------------------------------CCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCE
Q 004969          615 -------------------------------------------DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHY  651 (721)
Q Consensus       615 -------------------------------------------DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~  651 (721)
                                                                 .|.|..||+.+++..  .............+..++..
T Consensus       413 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~--W~~~~~~~~~~g~~~~~g~~  490 (677)
T 1kb0_A          413 NVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAA--WSVEHVSPWNGGTLTTAGNV  490 (677)
T ss_dssp             ECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEE--EEEEESSSCCCCEEEETTTE
T ss_pred             hcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEE--eecCCCCCCcCcceEeCCCE
Confidence                                                       278999999998653  33332222234456678888


Q ss_pred             EEEEeCCCcEEEEEcC-CCccccc
Q 004969          652 LLGKGSGTSMFVQSLR-GDPFRDF  674 (721)
Q Consensus       652 Lasgs~Dg~I~VWDl~-g~~l~~~  674 (721)
                      ++.++.||.+++||.+ |+.+..+
T Consensus       491 v~~g~~dg~l~a~D~~tG~~lw~~  514 (677)
T 1kb0_A          491 VFQGTADGRLVAYHAATGEKLWEA  514 (677)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEE
T ss_pred             EEEECCCCcEEEEECCCCceeeee
Confidence            9999999999999987 6655544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.32  E-value=1.2e-07  Score=93.40  Aligned_cols=137  Identities=23%  Similarity=0.326  Sum_probs=104.8

Q ss_pred             cceEeecccccccccccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhcc
Q 004969          126 MCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRF  205 (721)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (721)
                      ..+.|+|++|+|..+..++.+++|++|+|+ .|.|+.++. .|..||+|+.|.+.+|++..+    .++.++++|++|++
T Consensus        49 ~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~-~n~l~~l~~-~~~~~~~L~~L~L~~N~l~~l----~~~~~l~~L~~L~l  122 (198)
T 1ds9_A           49 ACKHLALSTNNIEKISSLSGMENLRILSLG-RNLIKKIEN-LDAVADTLEELWISYNQIASL----SGIEKLVNLRVLYM  122 (198)
T ss_dssp             TCSEEECSEEEESCCCCHHHHTTCCEEEEE-EEEECSCSS-HHHHHHHCSEEEEEEEECCCH----HHHHHHHHSSEEEE
T ss_pred             CCCEEECCCCCCccccccccCCCCCEEECC-CCCcccccc-hhhcCCcCCEEECcCCcCCcC----CccccCCCCCEEEC
Confidence            467899999999999888899999999999 788998875 677789999999999999876    56888888888865


Q ss_pred             ceeeecCCCCCCCCCCCCCCcccccccccCCCCCCCcceeecCCCcccccCCCCCccchhcccccchhhhhhhccCCcCC
Q 004969          206 QNWLCCDDTGNSSGSSDQDDKTDFSQLNICSSFGAYGNVVINPDSQILVEDSSDDSEVDFSIQHREYDYLELLSNLVPQL  285 (721)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (721)
                      ..+--                                                                           
T Consensus       123 ~~N~i---------------------------------------------------------------------------  127 (198)
T 1ds9_A          123 SNNKI---------------------------------------------------------------------------  127 (198)
T ss_dssp             SEEEC---------------------------------------------------------------------------
T ss_pred             CCCcC---------------------------------------------------------------------------
Confidence            54310                                                                           


Q ss_pred             CcccccccccccccccCcccCCchHHHHhhhcccccccccccCCCCccch-------HHHHHHHHHhCccccccCCCCcC
Q 004969          286 DGEIDLWNEVSFDAFSNQNEEESSAGVLARCTADVSLKYISCHASPICFE-------KHYRDYMIASLPKLKFLDNLPIR  358 (721)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pi~~~-------~~yRe~~I~~Lp~Lk~Ldn~~I~  358 (721)
                                         .+.....++.   .-..|+++....+|++..       ..|+..++..+|+|+.+|..++.
T Consensus       128 -------------------~~~~~~~~l~---~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~~i~  185 (198)
T 1ds9_A          128 -------------------TNWGEIDKLA---ALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVD  185 (198)
T ss_dssp             -------------------CCHHHHHHHT---TTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCGGGT
T ss_pred             -------------------CchhHHHHHh---cCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECCcccC
Confidence                               0000001111   123467777777888766       78999999999999999999998


Q ss_pred             hHHHHhh
Q 004969          359 KVDRERA  365 (721)
Q Consensus       359 k~ere~a  365 (721)
                      ..++..+
T Consensus       186 ~~e~~~a  192 (198)
T 1ds9_A          186 VDEREQA  192 (198)
T ss_dssp             TTTTTHH
T ss_pred             HHHHHHH
Confidence            8877766

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.31  E-value=9.1e-06  Score=88.24  Aligned_cols=206  Identities=7%  Similarity=-0.091  Sum_probs=122.9

Q ss_pred             eEEEEEeCCCCCEEEEEE----------CCCeEEEEECCCCeEEEEeecCCC-----CCCeEEEEEeeCCCCEEEEEeC-
Q 004969          456 PRQFEYHPSISCLMVFGT----------LDGEIVVVNHENENIVSYIPSFGA-----MNSVLGLCWLKKYPSKLIAGSD-  519 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs----------~DG~I~IWdl~tg~~i~~l~~~~H-----~~~V~sl~fsp~d~~~LaSgs~-  519 (721)
                      + .+.++| +++++.++.          .++.|.+||..+++.+..+...+.     ......++++ +++++++++.. 
T Consensus        68 P-~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~S-pDGk~lyVan~~  144 (368)
T 1mda_H           68 S-LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNC-ASSACLLFFLFG  144 (368)
T ss_dssp             C-EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEEC-TTSSCEEEEECS
T ss_pred             C-ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEc-CCCCEEEEEccC
Confidence            5 799999 887777775          378999999999999999874211     1234578888 78888888764 


Q ss_pred             -CCeEEE--EEcCCCCCcccc------cc-cCcceeEeccCCCeEEEE--------------------------EecCCC
Q 004969          520 -NGSLKL--YDIRHMPPSIRG------MH-YGAGTVTFDEFDQLTSVH--------------------------VNSMDE  563 (721)
Q Consensus       520 -DGtVrI--WDi~~~~~~~~~------~~-~~~~~~~~~~~~~V~sv~--------------------------~sp~~~  563 (721)
                       +..|.+  +|..+ ...+..      .. +..........+.+..+.                          ..++++
T Consensus       145 ~~~~v~V~~iD~~t-v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~  223 (368)
T 1mda_H          145 SSAAAGLSVPGASD-DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPG  223 (368)
T ss_dssp             SSCEEEEEETTTEE-EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTT
T ss_pred             CCCeEEEEEEchhh-ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCC
Confidence             467888  88865 111100      00 000000000000000010                          135566


Q ss_pred             EEEEEeCCCcEEEEECCCCc--EEEEEcc---------ccCCCeEEEEEcCCCCcEEEEEE---C-----CCcEEEEECC
Q 004969          564 LFLASGYSKNIALYDINSGR--RLQVFAD---------MHKEHINVVKFSNHSPSIFATSS---F-----DQDVKLWDLR  624 (721)
Q Consensus       564 ~lls~g~Dg~IrlWDl~s~~--~v~~l~~---------~h~~~V~sI~fsPdg~~lLaSgs---~-----DgtIrIWDlr  624 (721)
                      .++..+. +.+.+.|..++.  .+..+.-         ........++++|++.+++++..   .     ++.+.++|+.
T Consensus       224 ~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~  302 (368)
T 1mda_H          224 MLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS  302 (368)
T ss_dssp             EEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESS
T ss_pred             EEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECC
Confidence            6666666 888899986532  2222210         01111222689999955554444   2     2356699999


Q ss_pred             CCCceeEEEecCCCCeEEEEEecCCCE-EEEEe-CCCcEEEEEcCC
Q 004969          625 QKPIQPCYTASSSKGNVMVCFSPDDHY-LLGKG-SGTSMFVQSLRG  668 (721)
Q Consensus       625 s~~~~~~~~~~~~~~~vsl~fSpdg~~-Lasgs-~Dg~I~VWDl~g  668 (721)
                      +.+..  ..+.....+..++|+|||++ +++.. .++.|.++|+..
T Consensus       303 t~~vv--~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t  346 (368)
T 1mda_H          303 VGQTS--GPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS  346 (368)
T ss_dssp             SCCEE--ECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred             CCeEE--EEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence            98653  33333334558999999984 55556 589999999983

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.30  E-value=0.00012  Score=76.99  Aligned_cols=205  Identities=10%  Similarity=0.090  Sum_probs=125.5

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCC-----------------CCCCeEEEEEeeCCCCEEEEE
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFG-----------------AMNSVLGLCWLKKYPSKLIAG  517 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~-----------------H~~~V~sl~fsp~d~~~LaSg  517 (721)
                      .+.+++|++ +++++.++..++.|..|+..++..........                 ....+.++++.+.++ .|+.+
T Consensus        20 ~p~~i~~d~-~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~l~v~   97 (322)
T 2fp8_A           20 APNSFTFDS-TNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-QLYIV   97 (322)
T ss_dssp             CCCCEECCT-TCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-EEEEE
T ss_pred             CceEEEEcC-CCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCC-cEEEE
Confidence            367789999 78878888899999999988665432211000                 013578899873244 45555


Q ss_pred             eCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEec-CCCEEEEEeC-----------------CCcEEEEEC
Q 004969          518 SDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNS-MDELFLASGY-----------------SKNIALYDI  579 (721)
Q Consensus       518 s~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp-~~~~lls~g~-----------------Dg~IrlWDl  579 (721)
                      ...+.|..+|..++....  +......   ........+++.+ ++..+++...                 ++.|..||.
T Consensus        98 d~~~~i~~~d~~~g~~~~--~~~~~~~---~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~  172 (322)
T 2fp8_A           98 DCYYHLSVVGSEGGHATQ--LATSVDG---VPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP  172 (322)
T ss_dssp             ETTTEEEEECTTCEECEE--EESEETT---EECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEET
T ss_pred             ECCCCEEEEeCCCCEEEE--ecccCCC---CcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeC
Confidence            555558888876543211  1000000   0112357899988 7766655432                 367889998


Q ss_pred             CCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCC---ceeEEEecCCCCeEEEEEecCCCEEEEEe
Q 004969          580 NSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKP---IQPCYTASSSKGNVMVCFSPDDHYLLGKG  656 (721)
Q Consensus       580 ~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~---~~~~~~~~~~~~~vsl~fSpdg~~Lasgs  656 (721)
                      .+++......  .....+.++++|++..++++-...+.|.+|++....   ........   ++-.++++++|.+.++..
T Consensus       173 ~~~~~~~~~~--~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~---gP~gi~~d~~G~l~va~~  247 (322)
T 2fp8_A          173 STKETTLLLK--ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIP---NPGNIKRNADGHFWVSSS  247 (322)
T ss_dssp             TTTEEEEEEE--EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECS---SEEEEEECTTSCEEEEEE
T ss_pred             CCCEEEEecc--CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCC---CCCCeEECCCCCEEEEec
Confidence            7776433322  223456799999983355555667899999987532   11112222   255789999999777665


Q ss_pred             C----------CCcEEEEEcCCCcc
Q 004969          657 S----------GTSMFVQSLRGDPF  671 (721)
Q Consensus       657 ~----------Dg~I~VWDl~g~~l  671 (721)
                      .          .+.|..+|..|+.+
T Consensus       248 ~~~~~~~~~~~~~~v~~~d~~G~~~  272 (322)
T 2fp8_A          248 EELDGNMHGRVDPKGIKFDEFGNIL  272 (322)
T ss_dssp             EETTSSTTSCEEEEEEEECTTSCEE
T ss_pred             CcccccccCCCccEEEEECCCCCEE
Confidence            4          45677887766544

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.30  E-value=4e-05  Score=83.57  Aligned_cols=195  Identities=9%  Similarity=0.052  Sum_probs=128.9

Q ss_pred             EeCCCCCEEEEEEC-----CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEe----------CCCeEEE
Q 004969          461 YHPSISCLMVFGTL-----DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS----------DNGSLKL  525 (721)
Q Consensus       461 fsP~dg~~LasGs~-----DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs----------~DGtVrI  525 (721)
                      ..| +++.+.+...     ++.|.+.|..+++.+..++. +. .+  .++++ ++++++++++          .+++|.+
T Consensus        40 ~~p-d~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~v-G~-~P--~va~s-pDG~~lyVan~~~~r~~~G~~~~~Vsv  113 (386)
T 3sjl_D           40 PAP-DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG-GF-LP--NPVVA-DDGSFIAHASTVFSRIARGERTDYVEV  113 (386)
T ss_dssp             CCC-CTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE-CS-SC--EEEEC-TTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred             cCC-CCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEEC-CC-CC--cEEEC-CCCCEEEEEcccccccccCCCCCEEEE
Confidence            356 7777777765     68999999999999998874 32 33  38998 6788776665          4678999


Q ss_pred             EEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC--CCcEEEEECCCCcEEEEEccccCCCeEEEEEcC
Q 004969          526 YDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY--SKNIALYDINSGRRLQVFADMHKEHINVVKFSN  603 (721)
Q Consensus       526 WDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~--Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsP  603 (721)
                      ||..+.+.. ..+....+. .......-..+.++|++.+++++..  ++.|.++|+.+++.+.++..  .+.   ....|
T Consensus       114 iD~~t~~v~-~~I~v~~g~-r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v--~g~---~~~~P  186 (386)
T 3sjl_D          114 FDPVTLLPT-ADIELPDAP-RFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV--PDC---YHIFP  186 (386)
T ss_dssp             ECTTTCCEE-EEEEETTCC-CCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC--CSE---EEEEE
T ss_pred             EECCCCeEE-EEEECCCcc-ccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC--CCc---ceeec
Confidence            999986542 111000000 0000113456889999999998864  68999999999999998863  221   22346


Q ss_pred             CCCcEEEEEECCCcEEEEECCC-CCceeEEE--ecCCCCeE--EEEEe-cCCCEEEEEeCCCcEEEEEcCCC
Q 004969          604 HSPSIFATSSFDQDVKLWDLRQ-KPIQPCYT--ASSSKGNV--MVCFS-PDDHYLLGKGSGTSMFVQSLRGD  669 (721)
Q Consensus       604 dg~~lLaSgs~DgtIrIWDlrs-~~~~~~~~--~~~~~~~v--sl~fS-pdg~~Lasgs~Dg~I~VWDl~g~  669 (721)
                      .+.+.+++.+.||.+-+.++.+ ++......  +......+  ...|. ++|++++ .+.+|.+++.|+.+.
T Consensus       187 ~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~  257 (386)
T 3sjl_D          187 TAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSG  257 (386)
T ss_dssp             EETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTS
T ss_pred             CCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCC
Confidence            5657788889999999999976 44321111  11111222  24665 6776665 455899999998754

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.28  E-value=1.8e-05  Score=92.90  Aligned_cols=192  Identities=15%  Similarity=0.045  Sum_probs=125.2

Q ss_pred             EEEEeCCCCCEEEEEECCCe-------------------EEEEECCCCeEEEEeecCCCC-------CCeEEEEEeeCCC
Q 004969          458 QFEYHPSISCLMVFGTLDGE-------------------IVVVNHENENIVSYIPSFGAM-------NSVLGLCWLKKYP  511 (721)
Q Consensus       458 ~lafsP~dg~~LasGs~DG~-------------------I~IWdl~tg~~i~~l~~~~H~-------~~V~sl~fsp~d~  511 (721)
                      .++++| +.++++.++.++.                   |..||..+|+.+..++...|.       .++...... .++
T Consensus       239 ~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~-~~G  316 (689)
T 1yiq_A          239 SFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELP-IDG  316 (689)
T ss_dssp             CEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEE-ETT
T ss_pred             ceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeec-cCC
Confidence            578899 7788899888764                   999999999999888754332       122222221 244


Q ss_pred             C---EEEEEeCCCeEEEEEcCCCCCcccccccC---------------------------cceeEec---cCCCeEEEEE
Q 004969          512 S---KLIAGSDNGSLKLYDIRHMPPSIRGMHYG---------------------------AGTVTFD---EFDQLTSVHV  558 (721)
Q Consensus       512 ~---~LaSgs~DGtVrIWDi~~~~~~~~~~~~~---------------------------~~~~~~~---~~~~V~sv~~  558 (721)
                      .   .++.++.+|.++++|..+++.........                           .....+.   ....-..+++
T Consensus       317 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~  396 (689)
T 1yiq_A          317 KPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSY  396 (689)
T ss_dssp             EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEE
T ss_pred             cEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceE
Confidence            3   78899999999999999987642111100                           0000000   0001223678


Q ss_pred             ecCCCEEEEEeC---------------------------------------------CCcEEEEECCCCcEEEEEccccC
Q 004969          559 NSMDELFLASGY---------------------------------------------SKNIALYDINSGRRLQVFADMHK  593 (721)
Q Consensus       559 sp~~~~lls~g~---------------------------------------------Dg~IrlWDl~s~~~v~~l~~~h~  593 (721)
                      +|+.+.+++...                                             +|.|+.||+.+|+.+..+..  .
T Consensus       397 dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~--~  474 (689)
T 1yiq_A          397 NPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY--V  474 (689)
T ss_dssp             ETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE--S
T ss_pred             CCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC--C
Confidence            888787776532                                             37799999999999998873  3


Q ss_pred             CCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEE
Q 004969          594 EHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLG  654 (721)
Q Consensus       594 ~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Las  654 (721)
                      ..+..-.+...+ .+++.|+.||.++.||.++++..-.+.........-+.|..+|+..++
T Consensus       475 ~~~~~g~~~tag-glvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~  534 (689)
T 1yiq_A          475 TIFNGGTLSTAG-NLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT  534 (689)
T ss_dssp             SSCCCCEEEETT-TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             CCccCccceECC-CEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence            333434555566 588889999999999999997644444332222224778888875443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.26  E-value=4.8e-07  Score=84.46  Aligned_cols=31  Identities=26%  Similarity=0.486  Sum_probs=19.1

Q ss_pred             cccccCCCCccchHHHHHHHHHhCccccccC
Q 004969          323 KYISCHASPICFEKHYRDYMIASLPKLKFLD  353 (721)
Q Consensus       323 ~~~~~~~~Pi~~~~~yRe~~I~~Lp~Lk~Ld  353 (721)
                      +++....++++....|+...+..+|+|+.++
T Consensus       116 ~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~  146 (149)
T 2je0_A          116 KSLDLFNCEVTNLNDYRENVFKLLPQLTYLD  146 (149)
T ss_dssp             CEEECTTCGGGGSTTHHHHHHHHCTTCCEET
T ss_pred             CEEeCcCCcccchHHHHHHHHHHCCCccccc
Confidence            4444555566656666666667777776665

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.25  E-value=0.00025  Score=72.96  Aligned_cols=183  Identities=15%  Similarity=0.108  Sum_probs=123.3

Q ss_pred             eEEEEEeCCCCCEEEEEECCC--eEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969          456 PRQFEYHPSISCLMVFGTLDG--EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG--~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~  533 (721)
                      ...+.|+  ++.++.+.+.+|  .|+++|+++|+.+..+.... ..---+++..  .+...++.-.++.+.+||..+.+.
T Consensus        45 tqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~  119 (262)
T 3nol_A           45 TEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQ  119 (262)
T ss_dssp             EEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCE
T ss_pred             cceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcE
Confidence            5678887  357777777776  99999999999999887532 1122345543  334444445689999999998664


Q ss_pred             cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccc-cC---CCeEEEEEcCCCCcEE
Q 004969          534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADM-HK---EHINVVKFSNHSPSIF  609 (721)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~-h~---~~V~sI~fsPdg~~lL  609 (721)
                      .          .++.....=..++  +++..++.+..++.|.++|..+.+.+..+.-. ..   ..++.+.|. +| .++
T Consensus       120 ~----------~ti~~~~eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G-~ly  185 (262)
T 3nol_A          120 V----------RSFNYDGEGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DG-EIF  185 (262)
T ss_dssp             E----------EEEECSSCCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TT-EEE
T ss_pred             E----------EEEECCCCceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CC-EEE
Confidence            2          1121111112333  47777777766788999999999988876631 11   345567776 66 677


Q ss_pred             EEEECCCcEEEEECCCCCceeEEEecCC-----------CCeEEEEEecCCCEEEEEeC
Q 004969          610 ATSSFDQDVKLWDLRQKPIQPCYTASSS-----------KGNVMVCFSPDDHYLLGKGS  657 (721)
Q Consensus       610 aSgs~DgtIrIWDlrs~~~~~~~~~~~~-----------~~~vsl~fSpdg~~Lasgs~  657 (721)
                      +..-.+..|.+.|.++++......+.+-           .....++|+|+++.|++.+.
T Consensus       186 an~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          186 ANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             EEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            6666788999999999987666555311           12248999998888777763

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.25  E-value=4.5e-05  Score=89.37  Aligned_cols=195  Identities=11%  Similarity=0.087  Sum_probs=122.0

Q ss_pred             EEEEEeCCCCCEEEEEECCC-------------eEEEEECCCCeE--EEEeecCC-CCCCeEEEEEeeCCCCEEEEEeC-
Q 004969          457 RQFEYHPSISCLMVFGTLDG-------------EIVVVNHENENI--VSYIPSFG-AMNSVLGLCWLKKYPSKLIAGSD-  519 (721)
Q Consensus       457 ~~lafsP~dg~~LasGs~DG-------------~I~IWdl~tg~~--i~~l~~~~-H~~~V~sl~fsp~d~~~LaSgs~-  519 (721)
                      ..++|+  |++.|+.++.+.             .|++|++.++..  ...+.... |...+.++.|+ +++++|+.... 
T Consensus       178 ~~~~Ws--Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~S-pDg~~l~~~~~~  254 (693)
T 3iuj_A          178 SGISWL--GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVT-EDDRFLLISAAN  254 (693)
T ss_dssp             CCCEEE--TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEEC-TTSCEEEEEEES
T ss_pred             ccEEEe--CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEc-CCCCEEEEEEcc
Confidence            457888  677788777774             399999987642  33444334 55567889998 67877644332 


Q ss_pred             ---CCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-C---CcEEEEECCCCcE--EEEEcc
Q 004969          520 ---NGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-S---KNIALYDINSGRR--LQVFAD  590 (721)
Q Consensus       520 ---DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-D---g~IrlWDl~s~~~--v~~l~~  590 (721)
                         ++.|.+||+.++......+        ..+....... ++++++.++..+. +   +.|..+|+.++..  .+.+..
T Consensus       255 ~~~~~~i~~~d~~~~~~~~~~l--------~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~  325 (693)
T 3iuj_A          255 STSGNRLYVKDLSQENAPLLTV--------QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIP  325 (693)
T ss_dssp             SSSCCEEEEEETTSTTCCCEEE--------ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC
T ss_pred             CCCCcEEEEEECCCCCCceEEE--------eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEec
Confidence               2589999998754211111        1122223333 5567777766653 2   6799999987654  344554


Q ss_pred             ccCCCeEEEEEcCCCCcEEEEEECCC--cEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCC----CcEEE
Q 004969          591 MHKEHINVVKFSNHSPSIFATSSFDQ--DVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSG----TSMFV  663 (721)
Q Consensus       591 ~h~~~V~sI~fsPdg~~lLaSgs~Dg--tIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~D----g~I~V  663 (721)
                       |...+.  .|++++..++++...++  .|++||+..+.. ....+.. .+.+ .+.+++++..++....+    +.++.
T Consensus       326 -~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~-~~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~  400 (693)
T 3iuj_A          326 -ERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRV-REVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPTLYR  400 (693)
T ss_dssp             -CCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEE-EEECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCEEEE
T ss_pred             -CCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCee-EEeecCC-CceEEeeecCCCCCEEEEEecCCCCCCEEEE
Confidence             555555  88998854555555565  688999886532 2222332 2333 67788888877665544    78999


Q ss_pred             EEcCC
Q 004969          664 QSLRG  668 (721)
Q Consensus       664 WDl~g  668 (721)
                      ||+.+
T Consensus       401 ~d~~~  405 (693)
T 3iuj_A          401 FEPKS  405 (693)
T ss_dssp             ECTTT
T ss_pred             EECCC
Confidence            99864

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.24  E-value=0.00031  Score=72.18  Aligned_cols=206  Identities=9%  Similarity=0.086  Sum_probs=135.7

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .+..++|+|.++.++++...++.|...|.. |+.+..++..+. ...-+|++. .++.++++.-.++.+.++++......
T Consensus        28 ~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~-~D~EGIa~~-~~g~~~vs~E~~~~l~~~~v~~~~~i  104 (255)
T 3qqz_A           28 NISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV-KDLETIEYI-GDNQFVISDERDYAIYVISLTPNSEV  104 (255)
T ss_dssp             CEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSC-SSEEEEEEC-STTEEEEEETTTTEEEEEEECTTCCE
T ss_pred             CcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC-CChHHeEEe-CCCEEEEEECCCCcEEEEEcCCCCee
Confidence            488999999555667778889999999998 888888875443 457788887 56666666667789999988764421


Q ss_pred             ccccccCc-ceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC---CCcEEEEEc------cccCCCeEEEEEcCC
Q 004969          535 IRGMHYGA-GTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDIN---SGRRLQVFA------DMHKEHINVVKFSNH  604 (721)
Q Consensus       535 ~~~~~~~~-~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~---s~~~v~~l~------~~h~~~V~sI~fsPd  604 (721)
                       ....... .............++|+|.++.++++.......+|.+.   ....+..+.      ..+...+.+++++|.
T Consensus       105 -~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~  183 (255)
T 3qqz_A          105 -KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQ  183 (255)
T ss_dssp             -EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETT
T ss_pred             -eeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCC
Confidence             1000000 00011223447899999999888887754444444443   111222221      113456789999999


Q ss_pred             CCcEEEEEECCCcEEEEECCCCCceeEEEecCC--------CCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004969          605 SPSIFATSSFDQDVKLWDLRQKPIQPCYTASSS--------KGNVMVCFSPDDHYLLGKGSGTSMFVQSL  666 (721)
Q Consensus       605 g~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~--------~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl  666 (721)
                      .+++++.....+.+.++|.... ......+...        ..+-.++|.++|+..+ .+.-+.++++.-
T Consensus       184 tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyI-vsE~n~~y~f~~  251 (255)
T 3qqz_A          184 KNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYI-VSEPNRFYRFTP  251 (255)
T ss_dssp             TTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEE-EETTTEEEEEEC
T ss_pred             CCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEE-EcCCceEEEEEe
Confidence            8778888888889999997754 5555666532        2344799999998554 576777776643

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.24  E-value=4.1e-05  Score=84.62  Aligned_cols=193  Identities=11%  Similarity=0.039  Sum_probs=129.5

Q ss_pred             CCCEEEEEEC-C----CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEe----------CCCeEEEEEcC
Q 004969          465 ISCLMVFGTL-D----GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS----------DNGSLKLYDIR  529 (721)
Q Consensus       465 dg~~LasGs~-D----G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs----------~DGtVrIWDi~  529 (721)
                      ++.++++... +    +.|.++|..+++.+..++. +. .+  .+.++ +++++++++.          .++.|.++|..
T Consensus        83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~v-G~-~P--gia~S-pDgk~lyVan~~~~~~~~G~~~~~VsviD~~  157 (426)
T 3c75_H           83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDG-GF-LP--HPVAA-EDGSFFAQASTVFERIARGKRTDYVEVFDPV  157 (426)
T ss_dssp             CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE-CS-SC--EEEEC-TTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred             CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEEC-CC-CC--ceEEC-CCCCEEEEEeccccccccCCCCCEEEEEECC
Confidence            5565555544 2    6999999999999999885 32 34  89998 6777776665          46799999999


Q ss_pred             CCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC--CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCc
Q 004969          530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY--SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPS  607 (721)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~--Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~  607 (721)
                      +.+..-....+...  .+........+.++|++.+++++..  ++.|.++|+.+++.+..+.-  .+.   ....|++..
T Consensus       158 t~~vv~~I~v~g~~--r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v--~g~---~~~~p~g~~  230 (426)
T 3c75_H          158 TFLPIADIELPDAP--RFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV--PDC---YHIFPASPT  230 (426)
T ss_dssp             TCCEEEEEEETTCC--CCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC--CSE---EEEEEEETT
T ss_pred             CCcEEEEEECCCcc--ccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEc--CCc---eeeccCCCc
Confidence            86542111000000  0000122356789999999999874  57899999999999988873  121   345566656


Q ss_pred             EEEEEECCCcEEEEECCCCCceeEE--EecCCCCeE--EEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004969          608 IFATSSFDQDVKLWDLRQKPIQPCY--TASSSKGNV--MVCFSPDDHYLLGKGSGTSMFVQSLRGD  669 (721)
Q Consensus       608 lLaSgs~DgtIrIWDlrs~~~~~~~--~~~~~~~~v--sl~fSpdg~~Lasgs~Dg~I~VWDl~g~  669 (721)
                      .+++.+.||.+.+.+..+++.....  .+......+  .+.|++++..++..+..+.+++.|+.+.
T Consensus       231 ~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~  296 (426)
T 3c75_H          231 VFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAE  296 (426)
T ss_dssp             EEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSS
T ss_pred             EEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCC
Confidence            7788888999888888555432111  111112222  4678999988877788899999998643

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.24  E-value=4e-07  Score=86.81  Aligned_cols=102  Identities=19%  Similarity=0.270  Sum_probs=47.8

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhcc
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM  179 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (721)
                      .+|+.++|+++.+...-+......=-.-+.|+|++|++..+..++.+++|++|+|. .|.|+..-...|..||+|+.|.|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELS-ENRIFGGLDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEE-SCCCCSCCCHHHHHCTTCCEEEC
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECc-CCcCchHHHHHHhhCCCCCEEec
Confidence            45666666655443111111111112334555555555555555555555555555 44555543444555555555555


Q ss_pred             ccccchhhhHHHHHhhcCCcchhh
Q 004969          180 CETRVGNLWTTIAALSKLPSLAEL  203 (721)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~  203 (721)
                      .+|++..+ ..+.++.+|++|++|
T Consensus       103 s~N~l~~~-~~~~~l~~l~~L~~L  125 (168)
T 2ell_A          103 SGNKLKDI-STLEPLKKLECLKSL  125 (168)
T ss_dssp             BSSSCCSS-GGGGGGSSCSCCCEE
T ss_pred             cCCccCcc-hhHHHHhcCCCCCEE
Confidence            55555443 112344444444444

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.16  E-value=0.00014  Score=80.34  Aligned_cols=191  Identities=12%  Similarity=0.107  Sum_probs=123.7

Q ss_pred             CeEEEEEeCCCCCEEEEEECC------CeEEEEECCCCeEEEEeecCCCC-CCeEEEEEeeCCCCEEEEEe---------
Q 004969          455 RPRQFEYHPSISCLMVFGTLD------GEIVVVNHENENIVSYIPSFGAM-NSVLGLCWLKKYPSKLIAGS---------  518 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~D------G~I~IWdl~tg~~i~~l~~~~H~-~~V~sl~fsp~d~~~LaSgs---------  518 (721)
                      ++..+...| ++ ++++...+      |.|.++|.++++.+..+...... .--..+-|+ ++.+.+++..         
T Consensus       139 ~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~-p~~~~mvsS~wg~p~~~~~  215 (462)
T 2ece_A          139 RLHTVHCGP-DA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWN-LPNEVLVSSEWAVPNTIED  215 (462)
T ss_dssp             EEEEEEECS-SC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEE-TTTTEEEECBCCCHHHHTT
T ss_pred             cccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEEC-CCCCEEEEccCcCcccccc
Confidence            467788889 77 77776555      78999999999999998743222 223457777 6778888874         


Q ss_pred             ----------CCCeEEEEEcCCCCCcccccccCcceeEeccC-CCeEEEEE--ecCCCEEEEEeC------CCcEEEEEC
Q 004969          519 ----------DNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEF-DQLTSVHV--NSMDELFLASGY------SKNIALYDI  579 (721)
Q Consensus       519 ----------~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~-~~V~sv~~--sp~~~~lls~g~------Dg~IrlWDl  579 (721)
                                .+.+|.+||+.+++. ...+       ..... .....+.|  +|++.+.+++..      +++|.+|..
T Consensus       216 g~~~~~~~~~~~d~V~v~D~~~~k~-~~tI-------~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~  287 (462)
T 2ece_A          216 GLKLEHLKDRYGNRIHFWDLRKRKR-IHSL-------TLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFY  287 (462)
T ss_dssp             CCCTTTHHHHSCCEEEEEETTTTEE-EEEE-------ESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEE
T ss_pred             ccchhhhhhccCCEEEEEECCCCcE-eeEE-------ecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEe
Confidence                      368999999997532 1111       11100 11244545  899998888774      567877766


Q ss_pred             CCCcE--EEEE--ccc---------------cCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCC-CceeEEEecCC--
Q 004969          580 NSGRR--LQVF--ADM---------------HKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQK-PIQPCYTASSS--  637 (721)
Q Consensus       580 ~s~~~--v~~l--~~~---------------h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~-~~~~~~~~~~~--  637 (721)
                      ..++.  .+.+  ...               -......|.++|||..+.++.-..+.|.+||+... ....+..+...  
T Consensus       288 d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~  367 (462)
T 2ece_A          288 EDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGI  367 (462)
T ss_dssp             ETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTT
T ss_pred             cCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCe
Confidence            54432  1111  100               02457789999999555555566889999998632 22333332221  


Q ss_pred             ---------C----CeEEEEEecCCCEEEEEe
Q 004969          638 ---------K----GNVMVCFSPDDHYLLGKG  656 (721)
Q Consensus       638 ---------~----~~vsl~fSpdg~~Lasgs  656 (721)
                               .    ++..+.++|||++|+++.
T Consensus       368 ~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          368 FHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             TTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             eccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence                     1    345789999999999887

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.16  E-value=0.00076  Score=70.32  Aligned_cols=216  Identities=11%  Similarity=0.026  Sum_probs=130.1

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeC-CC-eEEEEEcCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD-NG-SLKLYDIRHMP  532 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~-DG-tVrIWDi~~~~  532 (721)
                      .+..++|+| ++.++++-..++.|..||... .....+..   ...+.++++. ++++++++... ++ .|..+|..+++
T Consensus        33 ~pegia~~~-~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~---~~~p~gia~~-~dG~l~vad~~~~~~~v~~~d~~~g~  106 (306)
T 2p4o_A           33 FLENLASAP-DGTIFVTNHEVGEIVSITPDG-NQQIHATV---EGKVSGLAFT-SNGDLVATGWNADSIPVVSLVKSDGT  106 (306)
T ss_dssp             CEEEEEECT-TSCEEEEETTTTEEEEECTTC-CEEEEEEC---SSEEEEEEEC-TTSCEEEEEECTTSCEEEEEECTTSC
T ss_pred             CcceEEECC-CCCEEEEeCCCCeEEEECCCC-ceEEEEeC---CCCceeEEEc-CCCcEEEEeccCCcceEEEEcCCCCe
Confidence            378899999 888877777889999999875 44444432   2468899997 56776555433 22 46666766544


Q ss_pred             CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcE-EEEEcc--------ccCCCeEEEEEc
Q 004969          533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRR-LQVFAD--------MHKEHINVVKFS  602 (721)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~-v~~l~~--------~h~~~V~sI~fs  602 (721)
                      ...  +      ...........++..+ +..++++. .++.|..+|..+++. +....+        ..-...+.+  +
T Consensus       107 ~~~--~------~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s  175 (306)
T 2p4o_A          107 VET--L------LTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--K  175 (306)
T ss_dssp             EEE--E------EECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--E
T ss_pred             EEE--E------EeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--C
Confidence            311  0      0011111123444433 44555554 578999999876532 221110        011234556  7


Q ss_pred             CCCCcEEEEEECCCcEEEEECCC-CCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCc--ccccc---c
Q 004969          603 NHSPSIFATSSFDQDVKLWDLRQ-KPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDP--FRDFN---M  676 (721)
Q Consensus       603 Pdg~~lLaSgs~DgtIrIWDlrs-~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~--l~~~~---~  676 (721)
                      |++..++++-...+.|..||+.. +.......+.....+-.++++++|+++++....+.|.+++..|..  +....   .
T Consensus       176 ~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G~~~~~~~~~~~~~  255 (306)
T 2p4o_A          176 RFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVI  255 (306)
T ss_dssp             EETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCT
T ss_pred             cCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCCCCEEEEeecccccC
Confidence            88755666777788999999875 322111111111122358999999988877778899999987654  21222   3


Q ss_pred             CeEEEEEC---CCC
Q 004969          677 SILAAYTR---PSS  687 (721)
Q Consensus       677 ~V~~v~fs---P~~  687 (721)
                      .+.+++|.   |++
T Consensus       256 ~p~~~a~~g~~~d~  269 (306)
T 2p4o_A          256 GSTAVAFGQTEGDC  269 (306)
T ss_dssp             TEEEEEECCSTTTT
T ss_pred             CceEEEEecccCCC
Confidence            57889998   886

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.16  E-value=0.00021  Score=73.54  Aligned_cols=181  Identities=13%  Similarity=0.025  Sum_probs=123.0

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI  535 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~  535 (721)
                      ...+.|+.  +.++++.+.+|.|+++|+++|+.+..+ ... ..---+++.  ..+...++.-.++.+.+||..+.+.. 
T Consensus        57 tqGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~~~-  129 (268)
T 3nok_A           57 TQGLVFHQ--GHFFESTGHQGTLRQLSLESAQPVWME-RLG-NIFAEGLAS--DGERLYQLTWTEGLLFTWSGMPPQRE-  129 (268)
T ss_dssp             EEEEEEET--TEEEEEETTTTEEEECCSSCSSCSEEE-ECT-TCCEEEEEE--CSSCEEEEESSSCEEEEEETTTTEEE-
T ss_pred             cceEEEEC--CEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-CcceeEEEE--eCCEEEEEEccCCEEEEEECCcCcEE-
Confidence            56788874  577888888999999999999988777 422 222234554  34455556667899999999986542 


Q ss_pred             cccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccc-cC---CCeEEEEEcCCCCcEEEE
Q 004969          536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADM-HK---EHINVVKFSNHSPSIFAT  611 (721)
Q Consensus       536 ~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~-h~---~~V~sI~fsPdg~~lLaS  611 (721)
                               .++.....-..++  +++..++.+..++.|+++|..+.+.+..+.-. +.   ..++.+.|. +| .+++.
T Consensus       130 ---------~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG-~lyan  196 (268)
T 3nok_A          130 ---------RTTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NG-VIYAN  196 (268)
T ss_dssp             ---------EEEECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEE
T ss_pred             ---------EEEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CC-EEEEE
Confidence                     1111111113444  46788888877899999999999988877621 11   245677777 66 67766


Q ss_pred             EECCCcEEEEECCCCCceeEEEecC-----------C-CCeEEEEEecCCCEEEEEe
Q 004969          612 SSFDQDVKLWDLRQKPIQPCYTASS-----------S-KGNVMVCFSPDDHYLLGKG  656 (721)
Q Consensus       612 gs~DgtIrIWDlrs~~~~~~~~~~~-----------~-~~~vsl~fSpdg~~Lasgs  656 (721)
                      .-.+..|.+.|.++++......+.+           . .....++|+|+++.|+..+
T Consensus       197 vw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          197 IWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             ETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             ECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            6678899999999997765555431           1 1223899999776555554

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.14  E-value=0.00075  Score=68.69  Aligned_cols=183  Identities=13%  Similarity=0.080  Sum_probs=122.4

Q ss_pred             CeEEEEEeCCCCCEEEEEECCC--eEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDG--EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP  532 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG--~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~  532 (721)
                      ....+.|++  +.++.+.+.+|  .|+++|+++|+.+..+....+. ---+++..  .+...+..-.++.+.+||..+.+
T Consensus        22 ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~-fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~   96 (243)
T 3mbr_X           22 FTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPY-FGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT   96 (243)
T ss_dssp             CEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTC-CEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred             ccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCc-ceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence            366788987  45666666654  9999999999999988753321 22344543  34455555678999999999855


Q ss_pred             CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccc-cC---CCeEEEEEcCCCCcE
Q 004969          533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADM-HK---EHINVVKFSNHSPSI  608 (721)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~-h~---~~V~sI~fsPdg~~l  608 (721)
                      ..          .++.....=..++  +++..++++..++.|.++|..+.+.+..+.-. +.   ..++.+.+. +| .+
T Consensus        97 ~~----------~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G-~l  162 (243)
T 3mbr_X           97 PR----------ARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NG-EL  162 (243)
T ss_dssp             EE----------EEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EE
T ss_pred             EE----------EEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CC-EE
Confidence            42          1222111123444  46777777777889999999999888877631 11   345667765 55 66


Q ss_pred             EEEEECCCcEEEEECCCCCceeEEEecC----------CC--CeEEEEEecCCCEEEEEe
Q 004969          609 FATSSFDQDVKLWDLRQKPIQPCYTASS----------SK--GNVMVCFSPDDHYLLGKG  656 (721)
Q Consensus       609 LaSgs~DgtIrIWDlrs~~~~~~~~~~~----------~~--~~vsl~fSpdg~~Lasgs  656 (721)
                      ++..-.+..|.+.|.++++......+.+          ..  ....++|+|+++.|+..+
T Consensus       163 yanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          163 LANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             EEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             EEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            6666578899999999997765555431          11  223899999877776666

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.13  E-value=0.00025  Score=73.33  Aligned_cols=194  Identities=7%  Similarity=-0.010  Sum_probs=119.8

Q ss_pred             eEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeC--CCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCE
Q 004969          487 NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD--NGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDEL  564 (721)
Q Consensus       487 ~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~--DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~  564 (721)
                      +.+.+++. +......++.|+ +++.++++.+.  ++.|+++|..+++....        +..........+++  .++.
T Consensus        10 ~vv~~~p~-~~~~f~~Gl~~~-~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~--------i~l~~~~fgeGi~~--~g~~   77 (266)
T 2iwa_A           10 EVLNEFPH-DPYAFTQGLVYA-ENDTLFESTGLYGRSSVRQVALQTGKVENI--------HKMDDSYFGEGLTL--LNEK   77 (266)
T ss_dssp             EEEEEEEC-CTTCCEEEEEEC-STTEEEEEECSTTTCEEEEEETTTCCEEEE--------EECCTTCCEEEEEE--ETTE
T ss_pred             eEEEEEEC-CCCCCcccEEEe-CCCeEEEECCCCCCCEEEEEECCCCCEEEE--------EecCCCcceEEEEE--eCCE
Confidence            45566642 222346899998 45555555443  68999999999764211        11111111234555  4567


Q ss_pred             EEEEe-CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCC----C
Q 004969          565 FLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSK----G  639 (721)
Q Consensus       565 lls~g-~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~----~  639 (721)
                      ++.+. .++.+.++|..+.+.+.++..+ ...  ...++++|..++++ ..++.|.++|..+.+...........    .
T Consensus        78 lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~~--g~glt~Dg~~l~vs-~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~  153 (266)
T 2iwa_A           78 LYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MKD--GWGLATDGKILYGS-DGTSILYEIDPHTFKLIKKHNVKYNGHRVIR  153 (266)
T ss_dssp             EEEEETTCSEEEEEETTTTEEEEEEECC-SSS--CCEEEECSSSEEEE-CSSSEEEEECTTTCCEEEEEECEETTEECCC
T ss_pred             EEEEEecCCEEEEEECCCCcEEEEEECC-CCC--eEEEEECCCEEEEE-CCCCeEEEEECCCCcEEEEEEECCCCccccc
Confidence            77666 4789999999999999988742 121  23355677555554 56889999999987654443332221    2


Q ss_pred             eEEEEEecCCCEEEEEeCCCcEEEEEcC-CCcccccc----------------cCeEEEEECCCCCcccccccEEEEecC
Q 004969          640 NVMVCFSPDDHYLLGKGSGTSMFVQSLR-GDPFRDFN----------------MSILAAYTRPSSKSEIVKVNLLASTDH  702 (721)
Q Consensus       640 ~vsl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~l~~~~----------------~~V~~v~fsP~~~~~~v~v~lLASgs~  702 (721)
                      ...+.|. +|...+....++.|.+-|.. ++......                .....++|+|+++      .+++++..
T Consensus       154 ~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~------~lfVTgk~  226 (266)
T 2iwa_A          154 LNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENK------RIFVTGKL  226 (266)
T ss_dssp             EEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTT------EEEEEETT
T ss_pred             ceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCC------EEEEECCC
Confidence            3367777 77555555567899999987 33322221                2458899999985      45566554


Q ss_pred             C
Q 004969          703 C  703 (721)
Q Consensus       703 ~  703 (721)
                      .
T Consensus       227 ~  227 (266)
T 2iwa_A          227 W  227 (266)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.09  E-value=0.00024  Score=72.99  Aligned_cols=190  Identities=9%  Similarity=0.007  Sum_probs=117.0

Q ss_pred             EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCC--eEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEE
Q 004969          488 IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG--SLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELF  565 (721)
Q Consensus       488 ~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DG--tVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~l  565 (721)
                      .+.+++. ....-..++.|+  ++.++.+++.+|  .|+++|+.+++....          ..-........+.+.++.+
T Consensus        33 vv~~~ph-d~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~----------~~l~~~~FgeGit~~g~~l   99 (262)
T 3nol_A           33 IVHSYPH-DTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQ----------IELGKRYFGEGISDWKDKI   99 (262)
T ss_dssp             EEEEEEC-CTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEE----------EECCTTCCEEEEEEETTEE
T ss_pred             EEEEecC-CCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEE----------EecCCccceeEEEEeCCEE
Confidence            4556642 333446889996  567777888776  999999999765211          1111222232223356677


Q ss_pred             EEEe-CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCe----
Q 004969          566 LASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGN----  640 (721)
Q Consensus       566 ls~g-~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~----  640 (721)
                      +... .++.+.+||..+.+.+.++..  ...-..++  +++..++++ ..++.|.++|..+.+.............    
T Consensus       100 y~ltw~~~~v~v~D~~t~~~~~ti~~--~~eG~glt--~dg~~L~~S-dGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~l  174 (262)
T 3nol_A          100 VGLTWKNGLGFVWNIRNLRQVRSFNY--DGEGWGLT--HNDQYLIMS-DGTPVLRFLDPESLTPVRTITVTAHGEELPEL  174 (262)
T ss_dssp             EEEESSSSEEEEEETTTCCEEEEEEC--SSCCCCEE--ECSSCEEEC-CSSSEEEEECTTTCSEEEEEECEETTEECCCE
T ss_pred             EEEEeeCCEEEEEECccCcEEEEEEC--CCCceEEe--cCCCEEEEE-CCCCeEEEEcCCCCeEEEEEEeccCCcccccc
Confidence            7666 488999999999999999984  22222333  566444444 4578899999998765544444322222    


Q ss_pred             EEEEEecCCCEEEEEeCCCcEEEEEcC-CCccccc---------------ccCeEEEEECCCCCcccccccEEEEecC
Q 004969          641 VMVCFSPDDHYLLGKGSGTSMFVQSLR-GDPFRDF---------------NMSILAAYTRPSSKSEIVKVNLLASTDH  702 (721)
Q Consensus       641 vsl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~l~~~---------------~~~V~~v~fsP~~~~~~v~v~lLASgs~  702 (721)
                      ..+.|. +|+..+..-.++.|.+.|.+ |+.....               ....+.++|+|+.+      .++++|-.
T Consensus       175 NELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~------~lfVTGK~  245 (262)
T 3nol_A          175 NELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHH------RLFVTGKL  245 (262)
T ss_dssp             EEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTT------EEEEEETT
T ss_pred             ceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCC------EEEEECCC
Confidence            246776 67655555567788888876 3321111               12568899999874      55666543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.09  E-value=0.00011  Score=83.87  Aligned_cols=191  Identities=6%  Similarity=0.047  Sum_probs=131.0

Q ss_pred             CCCEEEEEE-CCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEee-CCCCEEEEEe------------------CCCeEE
Q 004969          465 ISCLMVFGT-LDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLK-KYPSKLIAGS------------------DNGSLK  524 (721)
Q Consensus       465 dg~~LasGs-~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp-~d~~~LaSgs------------------~DGtVr  524 (721)
                      ||+++.... .+++|.+.|+.+.++...+.. .....+.++++.. +++.++++++                  .++.+.
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~i-p~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEI-PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEEC-SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeC-CCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            556666655 466899999999998885543 2234588888854 6788888874                  356899


Q ss_pred             EEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCC--------------------------------
Q 004969          525 LYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSK--------------------------------  572 (721)
Q Consensus       525 IWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg--------------------------------  572 (721)
                      +.|..+.+...+.        ...  ..-..++++|++.++++++.+.                                
T Consensus       179 vID~~t~~v~~qI--------~Vg--g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~G  248 (595)
T 1fwx_A          179 AVDADKWEVAWQV--------LVS--GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG  248 (595)
T ss_dssp             EEETTTTEEEEEE--------EES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred             EEECCCCeEEEEE--------EeC--CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCC
Confidence            9999875432111        110  1224566777888877777432                                


Q ss_pred             ------cEEEEECCC--CcE-EEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCc----------eeEEE
Q 004969          573 ------NIALYDINS--GRR-LQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPI----------QPCYT  633 (721)
Q Consensus       573 ------~IrlWDl~s--~~~-v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~----------~~~~~  633 (721)
                            .|.+.|.++  ++. +..+.  -.....++.++|||..+++++..+.+|.++|+.+.+.          .....
T Consensus       249 k~~~i~~V~VID~~~~~~~~~~~~Ip--vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~  326 (595)
T 1fwx_A          249 DYQELNGVKVVDGRKEASSLFTRYIP--IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE  326 (595)
T ss_dssp             CSEEETTEEEEECSGGGCCSSEEEEE--EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC
T ss_pred             CeeEECcEEEEeCcccCCceeEEEEe--cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE
Confidence                  478888887  544 45554  3345678999999966777777899999999986420          12345


Q ss_pred             ecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004969          634 ASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRG  668 (721)
Q Consensus       634 ~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g  668 (721)
                      .....++..++|+|+|...++.-.|+.|.+|++..
T Consensus       327 v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          327 PELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             CBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             cCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence            56667788899999994334556789999999863

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.09  E-value=0.00042  Score=71.37  Aligned_cols=189  Identities=7%  Similarity=-0.044  Sum_probs=120.0

Q ss_pred             eEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEE
Q 004969          487 NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFL  566 (721)
Q Consensus       487 ~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~ll  566 (721)
                      +.+.+++. ....-..++.|.  ++.+.++.+.+|.|+++|+.+++.....         +....--..+++  .++.++
T Consensus        44 ~Vv~~~ph-d~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~---------l~~~~FgeGit~--~g~~Ly  109 (268)
T 3nok_A           44 HIIREYPH-ATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME---------RLGNIFAEGLAS--DGERLY  109 (268)
T ss_dssp             EEEEEEEC-CTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE---------ECTTCCEEEEEE--CSSCEE
T ss_pred             EEEEEEcC-CCccccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE---------CCCCcceeEEEE--eCCEEE
Confidence            34555542 333456899986  5678888889999999999998763221         111111123444  555665


Q ss_pred             EEe-CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCe----E
Q 004969          567 ASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGN----V  641 (721)
Q Consensus       567 s~g-~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~----v  641 (721)
                      ... .++.+.+||..+.+.+.++..  ...-..++  +++ ..++.+..++.|.++|..+.+.............    .
T Consensus       110 ~ltw~~~~v~V~D~~Tl~~~~ti~~--~~eGwGLt--~Dg-~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lN  184 (268)
T 3nok_A          110 QLTWTEGLLFTWSGMPPQRERTTRY--SGEGWGLC--YWN-GKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELIN  184 (268)
T ss_dssp             EEESSSCEEEEEETTTTEEEEEEEC--SSCCCCEE--EET-TEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred             EEEccCCEEEEEECCcCcEEEEEeC--CCceeEEe--cCC-CEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccccccc
Confidence            555 589999999999999999984  22223444  456 4555555689999999999766544444332222    2


Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEEcC-CCccccc----------------ccCeEEEEECCCCCcccccccEEEEec
Q 004969          642 MVCFSPDDHYLLGKGSGTSMFVQSLR-GDPFRDF----------------NMSILAAYTRPSSKSEIVKVNLLASTD  701 (721)
Q Consensus       642 sl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~l~~~----------------~~~V~~v~fsP~~~~~~v~v~lLASgs  701 (721)
                      .+.|. +|+..+....++.|.+.|.+ |+.....                ....+.++++|+++      .++++|-
T Consensus       185 eLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~------rlfVTGK  254 (268)
T 3nok_A          185 ELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSG------RIFMTGK  254 (268)
T ss_dssp             EEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTC------CEEEEET
T ss_pred             ccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCC------EEEEeCC
Confidence            46676 77655544467788888876 3321111                13568899999874      6666663

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.05  E-value=3.2e-06  Score=85.20  Aligned_cols=102  Identities=21%  Similarity=0.318  Sum_probs=72.5

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccc--cccccceeeEEecccccccccccccccccccccchh
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL  177 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  177 (721)
                      .+|+.++|+++.+..-. .+.+..=-.-+.|+|++|+|..+.  .++.+++|++|+|. .|.|+.+..+.|..||+|+.|
T Consensus        40 ~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls-~N~l~~l~~~~~~~l~~L~~L  117 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLE-PGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG-TNQLTVLPSAVFDRLVHLKEL  117 (229)
T ss_dssp             TTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCEEEcCCCccCccC-HHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC-CCcCCccChhHhCcchhhCeE
Confidence            67888888887665311 011111124567888888888874  36788888888888 678888888888888888888


Q ss_pred             ccccccchhhhHHHHHhhcCCcchhhccc
Q 004969          178 SMCETRVGNLWTTIAALSKLPSLAELRFQ  206 (721)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (721)
                      .|.+|++..+   -.++.++++|+.|.++
T Consensus       118 ~Ls~N~l~~l---p~~~~~l~~L~~L~L~  143 (229)
T 3e6j_A          118 FMCCNKLTEL---PRGIERLTHLTHLALD  143 (229)
T ss_dssp             ECCSSCCCSC---CTTGGGCTTCSEEECC
T ss_pred             eccCCccccc---CcccccCCCCCEEECC
Confidence            8888888754   2456777888777543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.01  E-value=0.00048  Score=73.50  Aligned_cols=187  Identities=10%  Similarity=0.013  Sum_probs=117.1

Q ss_pred             CCCEEEEEECCCeEEEEECCCCeEEEEeecCCC-------CCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccc
Q 004969          465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGA-------MNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRG  537 (721)
Q Consensus       465 dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H-------~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~  537 (721)
                      .+..+++++.+|.|..+|..+|+.+........       ...+.+.-.  ..+..++.++.++.|..+|..+++.....
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~v~~~~g~l~a~d~~tG~~~W~~  129 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVT--VSGGHVYIGSEKAQVYALNTSDGTVAWQT  129 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEE--EETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCce--EeCCEEEEEcCCCEEEEEECCCCCEEEEE
Confidence            357788888899999999999998877664221       122322211  24577888999999999999987653221


Q ss_pred             cccCcceeEeccCCCe-EEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCe------EEEEEcCCCCcEEE
Q 004969          538 MHYGAGTVTFDEFDQL-TSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHI------NVVKFSNHSPSIFA  610 (721)
Q Consensus       538 ~~~~~~~~~~~~~~~V-~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V------~sI~fsPdg~~lLa  610 (721)
                      ..          ...+ .....  .++.+++++.++.+..+|..+|+.+..+.. . ..+      ...... ++  .++
T Consensus       130 ~~----------~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~-~-~~~~~~~~~~~~~~~-~~--~v~  192 (376)
T 3q7m_A          130 KV----------AGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNL-D-MPSLSLRGESAPTTA-FG--AAV  192 (376)
T ss_dssp             EC----------SSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEEC-C-C-----CCCCCCEEE-TT--EEE
T ss_pred             eC----------CCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeC-C-CCceeecCCCCcEEE-CC--EEE
Confidence            11          1111 11112  256888888899999999999999988763 1 111      122222 33  677


Q ss_pred             EEECCCcEEEEECCCCCceeEEEecCCCCeE------EEEEec--CCCEEEEEeCCCcEEEEEcC-CCc
Q 004969          611 TSSFDQDVKLWDLRQKPIQPCYTASSSKGNV------MVCFSP--DDHYLLGKGSGTSMFVQSLR-GDP  670 (721)
Q Consensus       611 Sgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v------sl~fSp--dg~~Lasgs~Dg~I~VWDl~-g~~  670 (721)
                      .++.++.+..+|..+++..-........+..      .+.-.|  .+..++.++.++.+..+|.+ |+.
T Consensus       193 ~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~  261 (376)
T 3q7m_A          193 VGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQI  261 (376)
T ss_dssp             ECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCE
T ss_pred             EEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcE
Confidence            7888999999999988654333322111100      000111  35667777788899999986 443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.99  E-value=0.00023  Score=76.10  Aligned_cols=178  Identities=13%  Similarity=0.076  Sum_probs=116.8

Q ss_pred             CCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCC--------eE-EEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCccc
Q 004969          466 SCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNS--------VL-GLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIR  536 (721)
Q Consensus       466 g~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~--------V~-sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~  536 (721)
                      +..++.|+.+|.|..+|..+|+.+...........        +. ....   .+..++.++.+|.+..+|..+++....
T Consensus       188 ~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~v~~~~~~g~l~~~d~~tG~~~w~  264 (376)
T 3q7m_A          188 FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV---VNGVVFALAYNGNLTALDLRSGQIMWK  264 (376)
T ss_dssp             TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE---ETTEEEEECTTSCEEEEETTTCCEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE---ECCEEEEEecCcEEEEEECCCCcEEee
Confidence            35788888999999999999998877653211100        10 1111   246788888899999999988765322


Q ss_pred             ccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCC
Q 004969          537 GMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQ  616 (721)
Q Consensus       537 ~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~Dg  616 (721)
                      ..           ......+..  .++.+++++.++.+..+|..+++.+..........+......  + ..++.++.+|
T Consensus       265 ~~-----------~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~-~~l~v~~~~g  328 (376)
T 3q7m_A          265 RE-----------LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--N-GNLVVGDSEG  328 (376)
T ss_dssp             EC-----------CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--T-TEEEEECTTS
T ss_pred             cc-----------CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--C-CEEEEEeCCC
Confidence            11           112233333  578888888999999999999999887762122223333332  3 4788888999


Q ss_pred             cEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEE
Q 004969          617 DVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQS  665 (721)
Q Consensus       617 tIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWD  665 (721)
                      .+..+|.++++......... .... ....  .+..|+.++.+|.++.|+
T Consensus       329 ~l~~~d~~tG~~~~~~~~~~-~~~~~~~~~--~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          329 YLHWINVEDGRFVAQQKVDS-SGFQTEPVA--ADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             EEEEEETTTCCEEEEEECCT-TCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred             eEEEEECCCCcEEEEEecCC-CcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence            99999999987644444322 1221 2222  256777888899999887

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.98  E-value=0.00017  Score=78.20  Aligned_cols=98  Identities=11%  Similarity=-0.031  Sum_probs=67.7

Q ss_pred             eEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEe----------CCCeEEEEEcCCCCCcccccccCcceeE
Q 004969          477 EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS----------DNGSLKLYDIRHMPPSIRGMHYGAGTVT  546 (721)
Q Consensus       477 ~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs----------~DGtVrIWDi~~~~~~~~~~~~~~~~~~  546 (721)
                      +|.++|..+++.+.++.. +. .+  .+.++ +++++++++.          .+++|.+||..+.+.. ..+...... .
T Consensus        47 ~vsvID~~t~~v~~~i~v-G~-~P--~i~~s-pDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv-~~I~v~~~~-~  119 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLG-AF-LS--LAVAG-HSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI-ADIELPDAP-R  119 (368)
T ss_dssp             EEEEEETTTTEEEEEEEE-CT-TC--EEEEC-TTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE-EEEEETTSC-S
T ss_pred             eEEEEECCCCeEEEEEeC-CC-CC--ceEEC-CCCCEEEEEcccccccccCCCCCEEEEEECCCCCEE-EEEECCCcc-c
Confidence            889999999999999885 33 34  79998 6777777775          4789999999997652 111100000 0


Q ss_pred             eccCCCeEEEEEecCCCEEEEEeC--CCcEEE--EECCC
Q 004969          547 FDEFDQLTSVHVNSMDELFLASGY--SKNIAL--YDINS  581 (721)
Q Consensus       547 ~~~~~~V~sv~~sp~~~~lls~g~--Dg~Irl--WDl~s  581 (721)
                      +........+.++|++.+++++..  +..+.+  +|..+
T Consensus       120 ~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t  158 (368)
T 1mda_H          120 FSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             CCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             cccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence            000012357889999999998874  467888  99876

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.97  E-value=0.0018  Score=70.33  Aligned_cols=202  Identities=8%  Similarity=0.088  Sum_probs=128.9

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .+..++|++.++.++++-...+.|..++...+.....+.  .......++++.+..+.+.++-...+.|.+.++......
T Consensus       117 ~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~--~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~  194 (386)
T 3v65_B          117 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS--TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK  194 (386)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC--SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE
T ss_pred             ccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe--CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE
Confidence            478999998566666666678899999998665444333  222345667776445566666667788888888754321


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-C-CcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-S-KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS  612 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-D-g~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg  612 (721)
                               ............++++|.++.++.+.. . +.|..+++........... .-...+.|+++|++.+++++-
T Consensus       195 ---------~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~-~~~~PnGlavd~~~~~lY~aD  264 (386)
T 3v65_B          195 ---------VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT-HLFWPNGLTIDYAGRRMYWVD  264 (386)
T ss_dssp             ---------EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS-SCSCEEEEEEEGGGTEEEEEE
T ss_pred             ---------EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEEC-CCCCeeeEEEeCCCCEEEEEE
Confidence                     111112234688999988888777764 3 6788888874333322222 345678999998775677777


Q ss_pred             ECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEE-cCCCc
Q 004969          613 SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQS-LRGDP  670 (721)
Q Consensus       613 s~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWD-l~g~~  670 (721)
                      +..+.|..+|+...... .....+...+..+++ ..+..+++-...+.|..++ ..|..
T Consensus       265 ~~~~~I~~~d~dG~~~~-~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~  321 (386)
T 3v65_B          265 AKHHVIERANLDGSHRK-AVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKN  321 (386)
T ss_dssp             TTTTEEEEECTTSCSCE-EEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCS
T ss_pred             CCCCEEEEEeCCCCeeE-EEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcc
Confidence            77788999998754322 222223334557777 3445555555677888888 44544

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.97  E-value=0.0015  Score=66.35  Aligned_cols=191  Identities=8%  Similarity=0.026  Sum_probs=116.7

Q ss_pred             eEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCC--eEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCE
Q 004969          487 NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG--SLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDEL  564 (721)
Q Consensus       487 ~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DG--tVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~  564 (721)
                      +.+..++. ....-..++.|.  ++.++.+.+.+|  .|+.+|+.+++...          ...-........+...++.
T Consensus        10 ~v~~~~ph-d~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~tgkv~~----------~~~l~~~~fgeGi~~~~~~   76 (243)
T 3mbr_X           10 RVVKRYPH-DTTAFTEGLFYL--RGHLYESTGETGRSSVRKVDLETGRILQ----------RAEVPPPYFGAGIVAWRDR   76 (243)
T ss_dssp             EEEEEEEC-CTTCCEEEEEEE--TTEEEEEECCTTSCEEEEEETTTCCEEE----------EEECCTTCCEEEEEEETTE
T ss_pred             EEEEEcCC-CCccccccEEEE--CCEEEEECCCCCCceEEEEECCCCCEEE----------EEeCCCCcceeEEEEeCCE
Confidence            34556642 334567799997  356667777754  99999999976521          1111122222222234566


Q ss_pred             EEEEe-CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCe---
Q 004969          565 FLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGN---  640 (721)
Q Consensus       565 lls~g-~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~---  640 (721)
                      ++... .++.+.+||..+.+.+.++..  ...-..++  +++..++++ ..++.|.++|..+.+.........+...   
T Consensus        77 ly~ltw~~~~v~v~D~~tl~~~~ti~~--~~~Gwglt--~dg~~L~vS-dgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~  151 (243)
T 3mbr_X           77 LIQLTWRNHEGFVYDLATLTPRARFRY--PGEGWALT--SDDSHLYMS-DGTAVIRKLDPDTLQQVGSIKVTAGGRPLDN  151 (243)
T ss_dssp             EEEEESSSSEEEEEETTTTEEEEEEEC--SSCCCEEE--ECSSCEEEE-CSSSEEEEECTTTCCEEEEEECEETTEECCC
T ss_pred             EEEEEeeCCEEEEEECCcCcEEEEEeC--CCCceEEe--eCCCEEEEE-CCCCeEEEEeCCCCeEEEEEEEccCCccccc
Confidence            66665 589999999999999999984  22223444  466445554 5588999999998765544443322222   


Q ss_pred             -EEEEEecCCCEEEEEeCCCcEEEEEcC-CCccc----------------ccccCeEEEEECCCCCcccccccEEEEecC
Q 004969          641 -VMVCFSPDDHYLLGKGSGTSMFVQSLR-GDPFR----------------DFNMSILAAYTRPSSKSEIVKVNLLASTDH  702 (721)
Q Consensus       641 -vsl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~l~----------------~~~~~V~~v~fsP~~~~~~v~v~lLASgs~  702 (721)
                       ..+.|. +|+..+....++.|.+.|.+ |+...                .-....+.++++|.++      .++++|-.
T Consensus       152 lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~------~lfVTGK~  224 (243)
T 3mbr_X          152 LNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHD------RLFVTGKR  224 (243)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTT------EEEEEETT
T ss_pred             ceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCC------EEEEECCC
Confidence             245555 66655544467788888775 32211                1123568899999874      66666644

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.95  E-value=0.0045  Score=65.03  Aligned_cols=203  Identities=9%  Similarity=0.049  Sum_probs=126.1

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCC----CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHEN----ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH  530 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~t----g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~  530 (721)
                      .+..++|++.++.++++-...+.|..+++.+    ......+.  .......++++.+.+++..++-...+.|.+.+...
T Consensus        31 ~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~--~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g  108 (316)
T 1ijq_A           31 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (316)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC--SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             ceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEe--CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence            4789999995555666666679999999875    22222222  22234567887634555556666788999999875


Q ss_pred             CCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC--CcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcE
Q 004969          531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS--KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSI  608 (721)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D--g~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~l  608 (721)
                      ....         ............++++|.++.++.+...  +.|..+++. |+....+....-...+.++++|++.++
T Consensus       109 ~~~~---------~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~l  178 (316)
T 1ijq_A          109 VKRK---------TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRL  178 (316)
T ss_dssp             SSEE---------EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEE
T ss_pred             CceE---------EEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEE
Confidence            3221         1111122346889999888877777643  678888886 444444432134568899999987566


Q ss_pred             EEEEECCCcEEEEECCCCCceeEEEec-CCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC-CCc
Q 004969          609 FATSSFDQDVKLWDLRQKPIQPCYTAS-SSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR-GDP  670 (721)
Q Consensus       609 LaSgs~DgtIrIWDlrs~~~~~~~~~~-~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~  670 (721)
                      +++-+..+.|..+|+.......+.... .-..+..+++. .+..+++-...+.|..++.. |..
T Consensus       179 Y~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~  241 (316)
T 1ijq_A          179 YWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD  241 (316)
T ss_dssp             EEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCC
T ss_pred             EEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcc
Confidence            666667789999999864433333321 12345577775 35555555567788888863 443

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.93  E-value=0.0032  Score=67.33  Aligned_cols=202  Identities=9%  Similarity=0.109  Sum_probs=128.7

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .+..++|++.++.++.+-...+.|..++...+.....+.  .......++++.+..+.+.++-...+.|.+.++......
T Consensus        74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~--~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~  151 (349)
T 3v64_C           74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS--TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK  151 (349)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             ceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe--CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE
Confidence            478999998566666666678899999998665444333  222345677776445566666667789999998764321


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-C-CcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-S-KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS  612 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-D-g~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg  612 (721)
                      .         ...........++++|.++.++.+.. . +.|..+++... ....+....-...+.++++|++..+.++-
T Consensus       152 ~---------l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~~~~PnGla~d~~~~~lY~aD  221 (349)
T 3v64_C          152 V---------LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIADTHLFWPNGLTIDYAGRRMYWVD  221 (349)
T ss_dssp             E---------EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEESCCSSCSCEEEEEEETTTTEEEEEE
T ss_pred             E---------EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-CcEEEEECCCCCcceEEEeCCCCEEEEEE
Confidence            1         11112234588999988887777664 4 77888888743 33333221345678999998775667776


Q ss_pred             ECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEE-cCCCc
Q 004969          613 SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQS-LRGDP  670 (721)
Q Consensus       613 s~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWD-l~g~~  670 (721)
                      ...+.|..+|+...... .........+..+++. .+..+++-...+.|..++ ..|..
T Consensus       222 ~~~~~I~~~~~dG~~~~-~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~  278 (349)
T 3v64_C          222 AKHHVIERANLDGSHRK-AVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKN  278 (349)
T ss_dssp             TTTTEEEEEETTSCSCE-EEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred             CCCCEEEEEeCCCCceE-EEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCc
Confidence            77788999998764322 2222223345567773 445555555677888887 44543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.92  E-value=1.3e-06  Score=94.69  Aligned_cols=142  Identities=16%  Similarity=0.087  Sum_probs=75.6

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEc
Q 004969          510 YPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFA  589 (721)
Q Consensus       510 d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~  589 (721)
                      ++..+++++.||.|..||..+++....          +.. ..+.+..+..++..+++++.|+.|+.||..+|+.+..+.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~----------~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~   76 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWT----------LKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLP   76 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEE----------EEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECS
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEE----------ecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeee
Confidence            467899999999999999999876322          111 233333333456667777789999999999998877765


Q ss_pred             cccC-CCeE-EEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          590 DMHK-EHIN-VVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       590 ~~h~-~~V~-sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                      . +. ..+. +..+. .+ ..+++|+.|+.|+.||.++++...  ....+.   ...++|++..+++++.++.|+.||.+
T Consensus        77 ~-~~~~~~~~sp~~~-~~-~~v~~g~~dg~v~a~D~~tG~~~w--~~~~~~---~~~~~p~~~~v~~~~~dg~v~a~d~~  148 (369)
T 2hz6_A           77 F-TIPELVQASPCRS-SD-GILYMGKKQDIWYVIDLLTGEKQQ--TLSSAF---ADSLSPSTSLLYLGRTEYTITMYDTK  148 (369)
T ss_dssp             C-CHHHHHTTCSCC-------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSS
T ss_pred             c-cCccccccCceEe-cC-CEEEEEeCCCEEEEEECCCCcEEE--EecCCC---cccccccCCEEEEEecCCEEEEEECC
Confidence            3 21 1110 01111 23 367788889999999999986533  332222   23556788999999999999999986


Q ss_pred             -CCc
Q 004969          668 -GDP  670 (721)
Q Consensus       668 -g~~  670 (721)
                       |+.
T Consensus       149 tG~~  152 (369)
T 2hz6_A          149 TREL  152 (369)
T ss_dssp             SSSC
T ss_pred             CCCE
Confidence             443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.91  E-value=0.0022  Score=65.00  Aligned_cols=180  Identities=8%  Similarity=0.001  Sum_probs=110.6

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeC---CCeEEEEEcCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD---NGSLKLYDIRHM  531 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~---DGtVrIWDi~~~  531 (721)
                      .+..++++|..+.++++-...+.|.+++...........  .......++++. +++..|+.+..   .+.|..+++...
T Consensus        80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~--~~~~~P~~i~vd-~~~g~lyv~~~~~~~~~I~~~~~dg~  156 (267)
T 1npe_A           80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFD--TGLVNPRGIVTD-PVRGNLYWTDWNRDNPKIETSHMDGT  156 (267)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--SSCSSEEEEEEE-TTTTEEEEEECCSSSCEEEEEETTSC
T ss_pred             CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEE--CCCCCccEEEEe-eCCCEEEEEECCCCCcEEEEEecCCC
Confidence            588999999445555565667899999987443322222  122457899998 44444444443   468888888653


Q ss_pred             CCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEE
Q 004969          532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFA  610 (721)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLa  610 (721)
                      ....         ...........++++++++.++.+.. .+.|..+|.........+.  .......++..  +..+++
T Consensus       157 ~~~~---------~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~--~~~~P~gi~~d--~~~lyv  223 (267)
T 1npe_A          157 NRRI---------LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE--GLQYPFAVTSY--GKNLYY  223 (267)
T ss_dssp             CCEE---------EECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE--CCCSEEEEEEE--TTEEEE
T ss_pred             CcEE---------EEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec--CCCCceEEEEe--CCEEEE
Confidence            2210         10011234688999998887777764 6889999998544333333  22344667664  335666


Q ss_pred             EEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCC
Q 004969          611 TSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDH  650 (721)
Q Consensus       611 Sgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~  650 (721)
                      +....+.|..+|..+++............+..+++.|++.
T Consensus       224 a~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          224 TDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             EETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             EECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence            6667789999999987543333222112345678888764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=97.88  E-value=5.6e-06  Score=81.13  Aligned_cols=101  Identities=15%  Similarity=0.182  Sum_probs=66.9

Q ss_pred             cceEeeccCCchhh-HHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhcc
Q 004969          101 KLRVVDLHDSSFGK-DFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM  179 (721)
Q Consensus       101 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (721)
                      +|+.++|+++.+.. +.+..+    -.-+.|+|++|.+..+..++.+++|++|+|. .+.|+......|..||+|+.|.|
T Consensus        45 ~L~~L~l~~n~i~~l~~l~~l----~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~-~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           45 SLTYITLANINVTDLTGIEYA----HNIKDLTINNIHATNYNPISGLSNLERLRIM-GKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             TCCEEEEESSCCSCCTTGGGC----TTCSEEEEESCCCSCCGGGTTCTTCCEEEEE-CTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             CccEEeccCCCccChHHHhcC----CCCCEEEccCCCCCcchhhhcCCCCCEEEeE-CCccCcccChhhcCCCCCCEEEe
Confidence            46666666654431 112222    1346677777777777777777888888887 67777755566777888888888


Q ss_pred             ccccchhhhHHHHHhhcCCcchhhcccee
Q 004969          180 CETRVGNLWTTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (721)
                      .+|++...  ...++.++++|++|.+..|
T Consensus       120 s~n~i~~~--~~~~l~~l~~L~~L~L~~n  146 (197)
T 4ezg_A          120 SHSAHDDS--ILTKINTLPKVNSIDLSYN  146 (197)
T ss_dssp             CSSBCBGG--GHHHHTTCSSCCEEECCSC
T ss_pred             cCCccCcH--hHHHHhhCCCCCEEEccCC
Confidence            88877651  2366777788887776654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.87  E-value=6.7e-06  Score=79.06  Aligned_cols=130  Identities=18%  Similarity=0.215  Sum_probs=93.2

Q ss_pred             CCCcceeeEeecCCccccchHHHHHHHHHhcccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccc--ccccc
Q 004969           69 GATEIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN--MIGEF  146 (721)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  146 (721)
                      +.+.+..+|+.+-.-..+.+      +...-.+|+.++|.++.+..-   +-...--.-+.|+|++|+|..+.  +++.+
T Consensus        17 ~~~~L~~L~l~~n~l~~i~~------~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l   87 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVIEN------LGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRICRIGEGLDQAL   87 (176)
T ss_dssp             CTTSCEEEECTTSCCCSCCC------GGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred             CcCCceEEEeeCCCCchhHH------hhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCcccccCcchhhcC
Confidence            44566677774322222211      222234899999999887652   22222235788999999999885  35889


Q ss_pred             ceeeEEecccccccccccc-cccccccccchhccccccchhhhHH-HHHhhcCCcchhhcccee
Q 004969          147 KRIHTLNLDYSTSLTSFKE-DCFSCMPNLICLSMCETRVGNLWTT-IAALSKLPSLAELRFQNW  208 (721)
Q Consensus       147 ~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  208 (721)
                      ++|++|+|+ +|.|+.++. +.|..+|+|+.|++.+|.+..+=.. ..++.++|+|+.|.+..+
T Consensus        88 ~~L~~L~L~-~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           88 PDLTELILT-NNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             TTCCEEECC-SCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             CCCCEEECC-CCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence            999999999 889999987 6899999999999999999865221 235888999999976543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.87  E-value=0.00092  Score=78.10  Aligned_cols=194  Identities=12%  Similarity=0.051  Sum_probs=120.4

Q ss_pred             EEEEeCCCCCEEEEEECCCe-------------------EEEEECCCCeEEEEeecCCCC-------CCeEEEEEeeCCC
Q 004969          458 QFEYHPSISCLMVFGTLDGE-------------------IVVVNHENENIVSYIPSFGAM-------NSVLGLCWLKKYP  511 (721)
Q Consensus       458 ~lafsP~dg~~LasGs~DG~-------------------I~IWdl~tg~~i~~l~~~~H~-------~~V~sl~fsp~d~  511 (721)
                      .+++.| ...+++.++.++.                   |.-+|..+|+.+..++...|.       .+....... .++
T Consensus       234 ~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~-~~G  311 (668)
T 1kv9_A          234 SMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELN-IDG  311 (668)
T ss_dssp             CEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEE-ETT
T ss_pred             ceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEec-cCC
Confidence            468888 6778888887764                   999999999999888754343       222222222 244


Q ss_pred             C---EEEEEeCCCeEEEEEcCCCCCcccccccC----------c-cee-------------EeccC---CCeEEEEEecC
Q 004969          512 S---KLIAGSDNGSLKLYDIRHMPPSIRGMHYG----------A-GTV-------------TFDEF---DQLTSVHVNSM  561 (721)
Q Consensus       512 ~---~LaSgs~DGtVrIWDi~~~~~~~~~~~~~----------~-~~~-------------~~~~~---~~V~sv~~sp~  561 (721)
                      +   .++.++.+|.+.++|..+++.........          . ..+             .+...   ..-..++++|+
T Consensus       312 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~  391 (668)
T 1kv9_A          312 KPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPG  391 (668)
T ss_dssp             EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETT
T ss_pred             cEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCC
Confidence            3   68899999999999999987642111000          0 000             00000   00112567777


Q ss_pred             CCEEEEEe------------------------------------CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCC
Q 004969          562 DELFLASG------------------------------------YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHS  605 (721)
Q Consensus       562 ~~~lls~g------------------------------------~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg  605 (721)
                      .+.+++..                                    .+|.|..||+.+++.+.....  ........+...+
T Consensus       392 ~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~~~~~t~g  469 (668)
T 1kv9_A          392 TGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY--PTHWNGGTLSTAG  469 (668)
T ss_dssp             TTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETT
T ss_pred             CCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC--CCCCcCceeEeCC
Confidence            66665421                                    237899999999999988773  3333333344455


Q ss_pred             CcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCC-EEEEEe
Q 004969          606 PSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDH-YLLGKG  656 (721)
Q Consensus       606 ~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~-~Lasgs  656 (721)
                       .++++++.|+.++.||.++++..-.+.........-+.+..+|+ |++.++
T Consensus       470 -g~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~  520 (668)
T 1kv9_A          470 -NLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA  520 (668)
T ss_dssp             -TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             -CEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence             58888999999999999999764444443211111355666776 454443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.86  E-value=6e-06  Score=85.11  Aligned_cols=103  Identities=15%  Similarity=0.301  Sum_probs=79.1

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhcc
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM  179 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (721)
                      .+|+.++|+.+.+..  +..+..  -.=+.|+|++|+|..+.-++.+.+|++|+|+ .|.|+.++  .|..||+|+.|.|
T Consensus        85 ~~L~~L~L~~N~l~~--l~~~~~--~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls-~N~i~~~~--~l~~l~~L~~L~L  157 (263)
T 1xeu_A           85 TKLEELSVNRNRLKN--LNGIPS--ACLSRLFLDNNELRDTDSLIHLKNLEILSIR-NNKLKSIV--MLGFLSKLEVLDL  157 (263)
T ss_dssp             SSCCEEECCSSCCSC--CTTCCC--SSCCEEECCSSCCSBSGGGTTCTTCCEEECT-TSCCCBCG--GGGGCTTCCEEEC
T ss_pred             CCCCEEECCCCccCC--cCcccc--CcccEEEccCCccCCChhhcCcccccEEECC-CCcCCCCh--HHccCCCCCEEEC
Confidence            578888888876654  222222  4556788888888888888888888888888 77888884  6888888888888


Q ss_pred             ccccchhhhHHHHHhhcCCcchhhccceeeecCC
Q 004969          180 CETRVGNLWTTIAALSKLPSLAELRFQNWLCCDD  213 (721)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (721)
                      .+|++..+    .++.++++|+.|.+..+.+...
T Consensus       158 ~~N~i~~~----~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          158 HGNEITNT----GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             TTSCCCBC----TTSTTCCCCCEEEEEEEEEECC
T ss_pred             CCCcCcch----HHhccCCCCCEEeCCCCcccCC
Confidence            88888877    7788888888888887766543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.86  E-value=0.00068  Score=77.29  Aligned_cols=208  Identities=9%  Similarity=0.035  Sum_probs=136.4

Q ss_pred             eEEEEE-e-CCCCCEEEEEE------------------CCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEE
Q 004969          456 PRQFEY-H-PSISCLMVFGT------------------LDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLI  515 (721)
Q Consensus       456 V~~laf-s-P~dg~~LasGs------------------~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~La  515 (721)
                      +..+++ + | ++.++++++                  .++.+.++|.++.+....+...+   .-..++.+ +++++++
T Consensus       136 phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg---~pd~~~~s-pdGk~~~  210 (595)
T 1fwx_A          136 IHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG---NLDNCDAD-YEGKWAF  210 (595)
T ss_dssp             EEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS---CCCCEEEC-SSSSEEE
T ss_pred             CcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC---CccceEEC-CCCCEEE
Confidence            778887 4 8 888888884                  35689999999999988887533   23456676 6788888


Q ss_pred             EEeCCC---------------eEEEEEcCCCC-------Cc----ccccccC----cc-eeEeccCCCeEEEEEecCCCE
Q 004969          516 AGSDNG---------------SLKLYDIRHMP-------PS----IRGMHYG----AG-TVTFDEFDQLTSVHVNSMDEL  564 (721)
Q Consensus       516 Sgs~DG---------------tVrIWDi~~~~-------~~----~~~~~~~----~~-~~~~~~~~~V~sv~~sp~~~~  564 (721)
                      +++.+.               .|.+.|.....       ..    +..+...    .. ...........++.++|+|.+
T Consensus       211 vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~  290 (595)
T 1fwx_A          211 STSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKH  290 (595)
T ss_dssp             EEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSE
T ss_pred             EEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCE
Confidence            887553               34444433210       00    0000000    01 112222234578899999999


Q ss_pred             EEEEeC-CCcEEEEECCCCc------------EEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCC-----
Q 004969          565 FLASGY-SKNIALYDINSGR------------RLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQK-----  626 (721)
Q Consensus       565 lls~g~-Dg~IrlWDl~s~~------------~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~-----  626 (721)
                      +++++. +.+|.++|+.+.+            .+....  -......++|+|+| +..++.-.|++|.+||+...     
T Consensus       291 v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~--vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~  367 (595)
T 1fwx_A          291 LCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE--LGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYA  367 (595)
T ss_dssp             EEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB--CCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHH
T ss_pred             EEEeCCCCCeEEEEECcccccccccccCcccceEEEcC--CCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhc
Confidence            998884 7899999999653            334443  45678899999999 88888888999999998761     


Q ss_pred             ---CceeEEEecCCCCe--E----EEEEecCCCEEEEEeCC--CcE-----------EEEEcCCCcc
Q 004969          627 ---PIQPCYTASSSKGN--V----MVCFSPDDHYLLGKGSG--TSM-----------FVQSLRGDPF  671 (721)
Q Consensus       627 ---~~~~~~~~~~~~~~--v----sl~fSpdg~~Lasgs~D--g~I-----------~VWDl~g~~l  671 (721)
                         ....+.++..+..+  .    ....+|||++|+++..-  ..+           .++|+.+..+
T Consensus       368 g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m  434 (595)
T 1fwx_A          368 GEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM  434 (595)
T ss_dssp             TCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred             ccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence               12334455555443  1    23568999999987542  233           7888876543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.83  E-value=4.9e-06  Score=81.66  Aligned_cols=103  Identities=17%  Similarity=0.238  Sum_probs=79.1

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeeccccccccccc--ccccceeeEEecccccccccccccccccccccchh
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL  177 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  177 (721)
                      .+|+.++|.++.+..  +..-+..=-.=+.|+|++|+|..+..  ++.+.+|++|+|+ .|.|+.+..+.|..||+|+.|
T Consensus        31 ~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls-~N~l~~i~~~~f~~l~~L~~L  107 (193)
T 2wfh_A           31 RDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS-YNRLRCIPPRTFDGLKSLRLL  107 (193)
T ss_dssp             TTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCBCCTTTTTTCTTCCEE
T ss_pred             CCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC-CCccCEeCHHHhCCCCCCCEE
Confidence            468888888876652  11112222245779999999998864  7888999999999 888999999999999999999


Q ss_pred             ccccccchhhhHHHHHhhcCCcchhhccce
Q 004969          178 SMCETRVGNLWTTIAALSKLPSLAELRFQN  207 (721)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (721)
                      +|.+|++..+  .-.++..|++|+.|+++.
T Consensus       108 ~L~~N~l~~~--~~~~~~~l~~L~~L~L~~  135 (193)
T 2wfh_A          108 SLHGNDISVV--PEGAFNDLSALSHLAIGA  135 (193)
T ss_dssp             ECCSSCCCBC--CTTTTTTCTTCCEEECCS
T ss_pred             ECCCCCCCee--ChhhhhcCccccEEEeCC
Confidence            9999998855  112477888898888763

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.82  E-value=0.00052  Score=71.12  Aligned_cols=196  Identities=9%  Similarity=0.035  Sum_probs=120.3

Q ss_pred             CCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCccee
Q 004969          466 SCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTV  545 (721)
Q Consensus       466 g~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~  545 (721)
                      +..+..|+.+|.|..+|.. |+.......  +...+.++... .++ .+..++.++.|..+|.. ++......       
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~--~~~~~~~~~~~-~~g-~l~vgt~~~~l~~~d~~-g~~~~~~~-------  173 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKT--KKAIYATPIVS-EDG-TIYVGSNDNYLYAINPD-GTEKWRFK-------  173 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEEC--SSCCCSCCEEC-TTS-CEEEECTTSEEEEECTT-SCEEEEEE-------
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcC--CCceeeeeEEc-CCC-EEEEEcCCCEEEEECCC-CCEeEEEe-------
Confidence            4667888889999999998 777666552  33344555543 344 46678888999999988 44311110       


Q ss_pred             EeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCC
Q 004969          546 TFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQ  625 (721)
Q Consensus       546 ~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs  625 (721)
                        .....+.++...+++. +.+++  +.+..|| .+++....+.. ....+.++...++|  .+..++.++.+..+|.. 
T Consensus       174 --~~~~~~~~~~~d~~g~-l~v~t--~~l~~~d-~~g~~~~~~~~-~~~~~~~~~~~~~g--~l~v~t~~~gl~~~~~~-  243 (330)
T 3hxj_A          174 --TNDAITSAASIGKDGT-IYFGS--DKVYAIN-PDGTEKWNFYA-GYWTVTRPAISEDG--TIYVTSLDGHLYAINPD-  243 (330)
T ss_dssp             --CSSCCCSCCEECTTCC-EEEES--SSEEEEC-TTSCEEEEECC-SSCCCSCCEECTTS--CEEEEETTTEEEEECTT-
T ss_pred             --cCCCceeeeEEcCCCE-EEEEe--CEEEEEC-CCCcEEEEEcc-CCcceeceEECCCC--eEEEEcCCCeEEEECCC-
Confidence              0112345555645555 44455  8899999 77888777764 55668888888887  35556778888888853 


Q ss_pred             CCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCcccccc---cCeEEEEECCCC
Q 004969          626 KPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDFN---MSILAAYTRPSS  687 (721)
Q Consensus       626 ~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~~~~---~~V~~v~fsP~~  687 (721)
                      +...  .......... ++...++|. |..++.+|.++.+|..++.+..+.   ..+.++...+++
T Consensus       244 g~~~--~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~~g~~~~~~~~~~~~~~~~~~d~~g  306 (330)
T 3hxj_A          244 GTEK--WRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINPDGTEKWNFETGSWIIATPVIDENG  306 (330)
T ss_dssp             SCEE--EEEECSSCCCSCCEECTTSC-EEEECTTCEEEEECTTSCEEEEEECSSCCCSCCEECTTC
T ss_pred             CCEe--EEeeCCCCccccceEcCCCe-EEEecCCCCEEEECCCCcEEEEEEcCCccccceEEcCCC
Confidence            3332  2222222222 455555665 555777889999987655433322   223334444555

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.82  E-value=0.01  Score=64.65  Aligned_cols=203  Identities=9%  Similarity=0.055  Sum_probs=126.9

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCC----eEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENE----NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH  530 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg----~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~  530 (721)
                      .+..++|++.++.++.+-...+.|+.+++...    .....+.  .......++++.+..+++.++-...+.|.+.++++
T Consensus       113 ~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~--~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g  190 (400)
T 3p5b_L          113 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  190 (400)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred             cceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe--CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence            48899999955555555566789999998752    2222232  23356778888644566666666778999999876


Q ss_pred             CCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC--CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcE
Q 004969          531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY--SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSI  608 (721)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~--Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~l  608 (721)
                      ....         ............++++|.++.++.+..  .+.|...++........... .-...+.|+++|++.++
T Consensus       191 ~~~~---------~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~-~l~~P~glavd~~~~~l  260 (400)
T 3p5b_L          191 VKRK---------TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE-NIQWPNGITLDLLSGRL  260 (400)
T ss_dssp             CSEE---------EEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECS-SCSCEEEEEEETTTTEE
T ss_pred             CceE---------EEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEEC-CCCceEEEEEEeCCCEE
Confidence            4321         111112234688999998888877763  37899999874333333332 34678999999887566


Q ss_pred             EEEEECCCcEEEEECCCCCceeEEEecC-CCCeEEEEEecCCCEEEEEeCCCcEEEEE-cCCCc
Q 004969          609 FATSSFDQDVKLWDLRQKPIQPCYTASS-SKGNVMVCFSPDDHYLLGKGSGTSMFVQS-LRGDP  670 (721)
Q Consensus       609 LaSgs~DgtIrIWDlrs~~~~~~~~~~~-~~~~vsl~fSpdg~~Lasgs~Dg~I~VWD-l~g~~  670 (721)
                      .++-...+.|..+|+.......+..... -..+..+++. .+..+.+-...+.|..++ ..|..
T Consensus       261 Y~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~  323 (400)
T 3p5b_L          261 YWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD  323 (400)
T ss_dssp             EEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCC
T ss_pred             EEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCc
Confidence            6666667889999997654433333221 2344566663 334444555667888888 34544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.81  E-value=4.4e-06  Score=95.96  Aligned_cols=89  Identities=18%  Similarity=0.292  Sum_probs=73.4

Q ss_pred             chhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhccccccchhhhHH
Q 004969          111 SFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTT  190 (721)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (721)
                      .++.+-+..+....  -+.|+|++|+|..+.-++.+.+|.+|+|+ .|.|+.|+. .|..||+|+.|.+.+|++..+   
T Consensus       429 ~l~~n~i~~l~~~~--L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls-~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l---  501 (567)
T 1dce_A          429 FLLENSVLKMEYAD--VRVLHLAHKDLTVLCHLEQLLLVTHLDLS-HNRLRALPP-ALAALRCLEVLQASDNALENV---  501 (567)
T ss_dssp             HHHHHHHHHHHHTT--CSEEECTTSCCSSCCCGGGGTTCCEEECC-SSCCCCCCG-GGGGCTTCCEEECCSSCCCCC---
T ss_pred             hhhcccccccCccC--ceEEEecCCCCCCCcCccccccCcEeecC-cccccccch-hhhcCCCCCEEECCCCCCCCC---
Confidence            34444444444433  46799999999999889999999999999 889999976 899999999999999999976   


Q ss_pred             HHHhhcCCcchhhccce
Q 004969          191 IAALSKLPSLAELRFQN  207 (721)
Q Consensus       191 ~~~~~~~~~~~~~~~~~  207 (721)
                       .++.+|++|++|.+..
T Consensus       502 -p~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          502 -DGVANLPRLQELLLCN  517 (567)
T ss_dssp             -GGGTTCSSCCEEECCS
T ss_pred             -cccCCCCCCcEEECCC
Confidence             5899999999996543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=97.79  E-value=1.1e-05  Score=76.74  Aligned_cols=105  Identities=19%  Similarity=0.190  Sum_probs=82.1

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccc-ccc-ccccceeeEEecccccccccccc-cccccccccch
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRK-LNM-IGEFKRIHTLNLDYSTSLTSFKE-DCFSCMPNLIC  176 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~  176 (721)
                      .+|++++|..+.+..-   .-...--.-+.|+|++|+|.. +.. ++.+++|++|+|. .|.|+.++. ..|..||+|+.
T Consensus        49 ~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~l~~l~~L~~  124 (168)
T 2ell_A           49 VNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS-GNKLKDISTLEPLKKLECLKS  124 (168)
T ss_dssp             GGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB-SSSCCSSGGGGGGSSCSCCCE
T ss_pred             CCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc-CCccCcchhHHHHhcCCCCCE
Confidence            5799999999877643   222233356889999999998 433 3358999999999 779999976 78999999999


Q ss_pred             hccccccchhhhHH-HHHhhcCCcchhhcccee
Q 004969          177 LSMCETRVGNLWTT-IAALSKLPSLAELRFQNW  208 (721)
Q Consensus       177 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  208 (721)
                      |.+.+|++..+-.. ..++.+||+|++|.+..|
T Consensus       125 L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A          125 LDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             EECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred             EEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence            99999999876321 247889999999976654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=97.79  E-value=1.6e-05  Score=83.19  Aligned_cols=102  Identities=19%  Similarity=0.343  Sum_probs=61.7

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhcc
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM  179 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (721)
                      .+|+.++|.++.+..-  ..+. .--.=+.|+|++|++..+..++.+++|++|+|+ .|.|+.+..  |..+|+|+.|.+
T Consensus       112 ~~L~~L~L~~n~i~~~--~~l~-~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~-~N~l~~~~~--l~~l~~L~~L~L  185 (291)
T 1h6t_A          112 KKLKSLSLEHNGISDI--NGLV-HLPQLESLYLGNNKITDITVLSRLTKLDTLSLE-DNQISDIVP--LAGLTKLQNLYL  185 (291)
T ss_dssp             TTCCEEECTTSCCCCC--GGGG-GCTTCCEEECCSSCCCCCGGGGGCTTCSEEECC-SSCCCCCGG--GTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCCCC--hhhc-CCCCCCEEEccCCcCCcchhhccCCCCCEEEcc-CCccccchh--hcCCCccCEEEC
Confidence            4566666666554431  1111 112245566777776666666666777777776 566666654  666777777777


Q ss_pred             ccccchhhhHHHHHhhcCCcchhhccceeeec
Q 004969          180 CETRVGNLWTTIAALSKLPSLAELRFQNWLCC  211 (721)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (721)
                      .+|++..+    .++.++++|+.|.+..+-+.
T Consensus       186 ~~N~i~~l----~~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          186 SKNHISDL----RALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             CSSCCCBC----GGGTTCTTCSEEEEEEEEEE
T ss_pred             CCCcCCCC----hhhccCCCCCEEECcCCccc
Confidence            77766654    55677777777776666543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=97.76  E-value=7.2e-06  Score=80.33  Aligned_cols=99  Identities=20%  Similarity=0.333  Sum_probs=52.5

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccc--cccccccceeeEEecccccccccccccccccccccchh
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRK--LNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL  177 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  177 (721)
                      .+|+.++|..+.+.......++. =-.=+.|+|++|++..  ...++.+++|++|+|.+|..|+.++  -|..||+|+.|
T Consensus        88 ~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L  164 (197)
T 4ezg_A           88 SNLERLRIMGKDVTSDKIPNLSG-LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSL  164 (197)
T ss_dssp             TTCCEEEEECTTCBGGGSCCCTT-CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEE
T ss_pred             CCCCEEEeECCccCcccChhhcC-CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEE
Confidence            45666666655554322222211 0123456666666655  4555566666666666433366654  35666666666


Q ss_pred             ccccccchhhhHHHHHhhcCCcchhhcc
Q 004969          178 SMCETRVGNLWTTIAALSKLPSLAELRF  205 (721)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (721)
                      .+.+|+|..+    .++.++|+|++|.+
T Consensus       165 ~l~~n~i~~~----~~l~~l~~L~~L~l  188 (197)
T 4ezg_A          165 NIQFDGVHDY----RGIEDFPKLNQLYA  188 (197)
T ss_dssp             ECTTBCCCCC----TTGGGCSSCCEEEE
T ss_pred             ECCCCCCcCh----HHhccCCCCCEEEe
Confidence            6666666543    35566666666544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.75  E-value=8.2e-06  Score=78.73  Aligned_cols=98  Identities=17%  Similarity=0.274  Sum_probs=68.9

Q ss_pred             eEeeccCCchhhHHHHHhhcCCccceEeeccccccccc--ccccccceeeEEecccccccccccccccccccccchhccc
Q 004969          103 RVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKL--NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMC  180 (721)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (721)
                      +.|+++++.++. +=..+   +-.-+.|+|++|+|..+  ..++.+++|++|+|+ .|.|+.++.+-|..||+|+.|.|.
T Consensus        15 ~~l~~~~n~l~~-iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           15 TLVNCQNIRLAS-VPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFN-SNKLTAIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SEEECCSSCCSS-CCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             cEEEeCCCCCCc-cCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECC-CCCCCccChhHhCCcchhhEEECC
Confidence            456666654432 00111   13446788888888887  347788888888888 778888888888888888888888


Q ss_pred             cccchhhhHHHHHhhcCCcchhhccce
Q 004969          181 ETRVGNLWTTIAALSKLPSLAELRFQN  207 (721)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (721)
                      +|++..+=  -.++.+|++|+.|++..
T Consensus        90 ~N~l~~l~--~~~~~~l~~L~~L~L~~  114 (174)
T 2r9u_A           90 DNHLKSIP--RGAFDNLKSLTHIYLYN  114 (174)
T ss_dssp             SSCCCCCC--TTTTTTCTTCSEEECCS
T ss_pred             CCccceeC--HHHhccccCCCEEEeCC
Confidence            88887551  12477788888887653

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.75  E-value=1.6e-05  Score=82.33  Aligned_cols=93  Identities=20%  Similarity=0.321  Sum_probs=62.5

Q ss_pred             cccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccc----cc-cccceeeEEecccccccccccc--cccccc
Q 004969           99 DQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN----MI-GEFKRIHTLNLDYSTSLTSFKE--DCFSCM  171 (721)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~~~~~--~~~~~~  171 (721)
                      |.--+..||..  |..|  .+|..+|+.+     ..|+...+.    .+ ..|++|++|+|. +|.|+.+..  +.|..+
T Consensus       126 n~~~~~LdLs~--l~~d--p~L~~~~l~l-----~~N~~~~~~~~l~i~~~~l~~L~~L~Ls-~N~l~~l~~l~~~~~~l  195 (267)
T 3rw6_A          126 DGSQQALDLKG--LRSD--PDLVAQNIDV-----VLNRRSCMAATLRIIEENIPELLSLNLS-NNRLYRLDDMSSIVQKA  195 (267)
T ss_dssp             ETTTTEEECTT--GGGC--HHHHHTTCCC-----CTTSHHHHHHHHHHHHHHCTTCCEEECT-TSCCCCCGGGTTHHHHS
T ss_pred             chhccccCHHH--cCCC--cchhhcCccc-----cCCHHHHHHHHHHHHHhhCCCCCEEECC-CCCCCCCccchhHHhhC
Confidence            44467788877  5544  3566666543     344322221    22 358899999999 889999875  778899


Q ss_pred             cccchhccccccchhhhHHHHHhhcCCcchhh
Q 004969          172 PNLICLSMCETRVGNLWTTIAALSKLPSLAEL  203 (721)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (721)
                      |+|+.|.+.+|+|..+ ..+..|..| +|++|
T Consensus       196 ~~L~~L~Ls~N~i~~~-~~l~~l~~l-~L~~L  225 (267)
T 3rw6_A          196 PNLKILNLSGNELKSE-RELDKIKGL-KLEEL  225 (267)
T ss_dssp             TTCCEEECTTSCCCSG-GGGGGGTTS-CCSEE
T ss_pred             CCCCEEECCCCccCCc-hhhhhcccC-CcceE
Confidence            9999999999999976 334444433 55444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.74  E-value=7.2e-06  Score=80.83  Aligned_cols=78  Identities=22%  Similarity=0.334  Sum_probs=44.2

Q ss_pred             ceEeeccccccccccc--ccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhc
Q 004969          127 CEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELR  204 (721)
Q Consensus       127 ~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (721)
                      =+.|+|++|+|..+..  ++.+++|++|+|. .|.|+.+....|..+|+|+.|.|.+|++..+=  -.++.++++|++|+
T Consensus        54 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~  130 (208)
T 2o6s_A           54 LTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS-TNQLQSLPNGVFDKLTQLKELALNTNQLQSLP--DGVFDKLTQLKDLR  130 (208)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEE
T ss_pred             CcEEECCCCccCccChhhcCCCCCcCEEECC-CCcCCccCHhHhcCccCCCEEEcCCCcCcccC--HhHhccCCcCCEEE
Confidence            3556666666665543  4455666666666 55566666666666666666666666655431  12245566666665


Q ss_pred             cce
Q 004969          205 FQN  207 (721)
Q Consensus       205 ~~~  207 (721)
                      ++.
T Consensus       131 l~~  133 (208)
T 2o6s_A          131 LYQ  133 (208)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.73  E-value=9e-06  Score=78.03  Aligned_cols=77  Identities=23%  Similarity=0.402  Sum_probs=55.9

Q ss_pred             ceEeecccccccccc--cccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhc
Q 004969          127 CEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELR  204 (721)
Q Consensus       127 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (721)
                      -+.|+|++|+|..+.  .++.+.+|++|+|+ .|.|+.+..+-|..||+|+.|.+.+|++..+=.  .++.+|++|++|.
T Consensus        32 l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls-~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~  108 (170)
T 3g39_A           32 TQVLYLYDNQITKLEPGVFDRLTQLTRLDLD-NNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPR--GAFDNLKSLTHIW  108 (170)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCSEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEE
T ss_pred             CcEEEcCCCcCCccChhhhcCcccCCEEECC-CCCcCccChhhccCCCCCCEEECCCCccCEeCH--HHhcCCCCCCEEE
Confidence            366888888887773  36777788888888 677888888888888888888888887775411  2466777777776


Q ss_pred             cc
Q 004969          205 FQ  206 (721)
Q Consensus       205 ~~  206 (721)
                      +.
T Consensus       109 L~  110 (170)
T 3g39_A          109 LL  110 (170)
T ss_dssp             CC
T ss_pred             eC
Confidence            54

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.72  E-value=6.6e-06  Score=82.36  Aligned_cols=104  Identities=13%  Similarity=0.197  Sum_probs=76.3

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeeccccccccc--ccccccceeeEEecccccccccccccccccccccchh
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKL--NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL  177 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  177 (721)
                      ..|+.++|+++.+..-.- +.+..=-.=+.|+|++|+|..+  +.++.+.+|++|+|. .|.|+.++...|..||+|+.|
T Consensus        32 ~~l~~L~l~~n~i~~i~~-~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls-~N~l~~l~~~~f~~l~~L~~L  109 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPP-GAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY-GNKITELPKSLFEGLFSLQLL  109 (220)
T ss_dssp             TTCCEEECCSSCCCEECT-TSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC-SSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCEEECCCCcCCCcCH-hHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC-CCcCCccCHhHccCCCCCCEE
Confidence            467888888876542100 0111112347799999999888  667888999999999 788999999999999999999


Q ss_pred             ccccccchhhhHHHHHhhcCCcchhhccce
Q 004969          178 SMCETRVGNLWTTIAALSKLPSLAELRFQN  207 (721)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (721)
                      .|.+|+|..+=  ..++.+|++|++|.+..
T Consensus       110 ~L~~N~l~~~~--~~~~~~l~~L~~L~L~~  137 (220)
T 2v9t_B          110 LLNANKINCLR--VDAFQDLHNLNLLSLYD  137 (220)
T ss_dssp             ECCSSCCCCCC--TTTTTTCTTCCEEECCS
T ss_pred             ECCCCCCCEeC--HHHcCCCCCCCEEECCC
Confidence            99999887651  24677888888887654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=97.72  E-value=8.5e-06  Score=82.96  Aligned_cols=77  Identities=19%  Similarity=0.344  Sum_probs=37.2

Q ss_pred             eEeecccccccccc--cccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhcc
Q 004969          128 EVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRF  205 (721)
Q Consensus       128 ~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (721)
                      +.|+|++|+|..+.  .++.+++|++|+|. .|.|+.+....|..+++|+.|.|.+|++..+=.  .++.++++|++|.+
T Consensus        86 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L  162 (251)
T 3m19_A           86 GTLGLANNQLASLPLGVFDHLTQLDKLYLG-GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA--GAFDKLTNLQTLSL  162 (251)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEEC
T ss_pred             CEEECCCCcccccChhHhcccCCCCEEEcC-CCcCCCcChhHhccCCcccEEECcCCcCCccCH--HHcCcCcCCCEEEC
Confidence            44555555555443  33445555555555 445555555555555555555555555543310  13444555555544


Q ss_pred             ce
Q 004969          206 QN  207 (721)
Q Consensus       206 ~~  207 (721)
                      +.
T Consensus       163 ~~  164 (251)
T 3m19_A          163 ST  164 (251)
T ss_dssp             CS
T ss_pred             CC
Confidence            43

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.71  E-value=9e-06  Score=80.14  Aligned_cols=105  Identities=15%  Similarity=0.262  Sum_probs=82.8

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeeccccccccccc--ccccceeeEEecccccccccccccccccccccchh
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL  177 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  177 (721)
                      .+|+.++|.++.+.. .....+..=-.=+.|+|++|+|..+..  ++.+.+|++|+|. .|.|+.+....|..+|+|+.|
T Consensus        52 ~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L  129 (208)
T 2o6s_A           52 TSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN-TNQLQSLPDGVFDKLTQLKDL  129 (208)
T ss_dssp             TTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCcEEECCCCccCc-cChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC-CCcCcccCHhHhccCCcCCEE
Confidence            579999999887652 112222222345789999999998865  6789999999999 789999999999999999999


Q ss_pred             ccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969          178 SMCETRVGNLWTTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (721)
                      .|.+|++..+=.  .++.++++|++|.+..+
T Consensus       130 ~l~~N~l~~~~~--~~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A          130 RLYQNQLKSVPD--GVFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             ECCSSCCSCCCT--TTTTTCTTCCEEECCSC
T ss_pred             ECCCCccceeCH--HHhccCCCccEEEecCC
Confidence            999999885411  34788999999988765

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=97.71  E-value=1.8e-05  Score=82.66  Aligned_cols=74  Identities=19%  Similarity=0.438  Sum_probs=40.7

Q ss_pred             eEeecccccccccccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhccce
Q 004969          128 EVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQN  207 (721)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (721)
                      +.|+|++|++..+.-++.+++|++|+|. .|.|+.+  ..|..||+|+.|.|.+|++..+    .++.+|++|++|.+..
T Consensus        93 ~~L~l~~n~l~~~~~l~~l~~L~~L~L~-~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~L~~  165 (291)
T 1h6t_A           93 GWLFLDENKVKDLSSLKDLKKLKSLSLE-HNGISDI--NGLVHLPQLESLYLGNNKITDI----TVLSRLTKLDTLSLED  165 (291)
T ss_dssp             CEEECCSSCCCCGGGGTTCTTCCEEECT-TSCCCCC--GGGGGCTTCCEEECCSSCCCCC----GGGGGCTTCSEEECCS
T ss_pred             CEEECCCCcCCCChhhccCCCCCEEECC-CCcCCCC--hhhcCCCCCCEEEccCCcCCcc----hhhccCCCCCEEEccC
Confidence            4455555555555555555555555555 4455555  3355555555555555555544    4455555555555544


Q ss_pred             e
Q 004969          208 W  208 (721)
Q Consensus       208 ~  208 (721)
                      |
T Consensus       166 N  166 (291)
T 1h6t_A          166 N  166 (291)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.70  E-value=2.2e-05  Score=90.87  Aligned_cols=104  Identities=19%  Similarity=0.370  Sum_probs=80.6

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhcc
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM  179 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (721)
                      .+|+.++|.++.+..  +..+. .=-.-+.|+|++|+|..+..++.+++|++|+|+ .|.|+.+..  |..||+|+.|.|
T Consensus       109 ~~L~~L~Ls~N~l~~--l~~l~-~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls-~N~l~~~~~--l~~l~~L~~L~L  182 (605)
T 1m9s_A          109 KKLKSLSLEHNGISD--INGLV-HLPQLESLYLGNNKITDITVLSRLTKLDTLSLE-DNQISDIVP--LAGLTKLQNLYL  182 (605)
T ss_dssp             TTCCEEECTTSCCCC--CGGGG-GCTTCSEEECCSSCCCCCGGGGSCTTCSEEECC-SSCCCCCGG--GTTCTTCCEEEC
T ss_pred             CCCCEEEecCCCCCC--Ccccc-CCCccCEEECCCCccCCchhhcccCCCCEEECc-CCcCCCchh--hccCCCCCEEEC
Confidence            568888888776653  11111 112356788888888888888888899999998 778888866  888999999999


Q ss_pred             ccccchhhhHHHHHhhcCCcchhhccceeeecCC
Q 004969          180 CETRVGNLWTTIAALSKLPSLAELRFQNWLCCDD  213 (721)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (721)
                      .+|++..+    .+|.+|++|+.|++..|-+...
T Consensus       183 s~N~i~~l----~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          183 SKNHISDL----RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CSSCCCBC----GGGTTCTTCSEEECCSEEEECC
T ss_pred             cCCCCCCC----hHHccCCCCCEEEccCCcCcCC
Confidence            99988876    6788999999999988877654

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.70  E-value=0.0085  Score=66.11  Aligned_cols=201  Identities=8%  Similarity=0.028  Sum_probs=118.2

Q ss_pred             CeEEEEEeCC-CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC---Ce-EEEEEcC
Q 004969          455 RPRQFEYHPS-ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN---GS-LKLYDIR  529 (721)
Q Consensus       455 ~V~~lafsP~-dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D---Gt-VrIWDi~  529 (721)
                      .+..++|+|. +...|..+...+.|+.++..++.......   ......+++|. ++++++++....   .. +...+..
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~---~~~~P~giavd-~dG~lyVad~~~~~~~~gv~~~~~~  215 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT---NIGQCADVNFT-LNGDMVVVDDQSSDTNTGIYLFTRA  215 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC---CCSCEEEEEEC-TTCCEEEEECCSCTTSEEEEEECGG
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec---CCCCccEEEEC-CCCCEEEEcCCCCcccceEEEEECC
Confidence            5889999993 23444444444899999998887665443   34568899998 677744444311   11 2223322


Q ss_pred             CCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEE-ccccCCCeEEEEEcCCCCc
Q 004969          530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVF-ADMHKEHINVVKFSNHSPS  607 (721)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~v~~l-~~~h~~~V~sI~fsPdg~~  607 (721)
                      .+..         .............+++++.++.++.+. .++.|+.+|..++.....+ ..........++|+|++..
T Consensus       216 ~~~~---------~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~  286 (433)
T 4hw6_A          216 SGFT---------ERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDW  286 (433)
T ss_dssp             GTTC---------CEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSE
T ss_pred             CCee---------ccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCE
Confidence            2111         001111223346788888555555554 5788999999877763333 2112233457999999943


Q ss_pred             EEEEEECCCcEEEEECCC--CCcee--EEEec-CC-------------CCeEEEEE---------ecCCCEEEEEeCCCc
Q 004969          608 IFATSSFDQDVKLWDLRQ--KPIQP--CYTAS-SS-------------KGNVMVCF---------SPDDHYLLGKGSGTS  660 (721)
Q Consensus       608 lLaSgs~DgtIrIWDlrs--~~~~~--~~~~~-~~-------------~~~vsl~f---------Spdg~~Lasgs~Dg~  660 (721)
                      ++++-...+.|+.++...  +....  .+... +.             ..+..+++         .++|.+.++-...+.
T Consensus       287 LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~  366 (433)
T 4hw6_A          287 AYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHT  366 (433)
T ss_dssp             EEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTE
T ss_pred             EEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCE
Confidence            666666778999988652  32111  11111 11             12346888         677777777666778


Q ss_pred             EEEEEcCC
Q 004969          661 MFVQSLRG  668 (721)
Q Consensus       661 I~VWDl~g  668 (721)
                      |+.++..|
T Consensus       367 I~~~~~~G  374 (433)
T 4hw6_A          367 VRVLTPEG  374 (433)
T ss_dssp             EEEECTTS
T ss_pred             EEEECCCC
Confidence            88887654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.69  E-value=0.0009  Score=77.82  Aligned_cols=231  Identities=10%  Similarity=-0.015  Sum_probs=128.1

Q ss_pred             EEEEEeCCCCCEEEEEEC-CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEe-CC-----CeEEEEEcC
Q 004969          457 RQFEYHPSISCLMVFGTL-DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS-DN-----GSLKLYDIR  529 (721)
Q Consensus       457 ~~lafsP~dg~~LasGs~-DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs-~D-----GtVrIWDi~  529 (721)
                      .++++.+ ++.+++.|+. ++.+.+||..+++....-....... -.+++.. +++..++.|+ .+     ..+.+||..
T Consensus       246 ~~~~~~~-~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~-~~s~~~~-~dg~iyv~GG~~~~~~~~~~~e~yd~~  322 (656)
T 1k3i_A          246 PGISMDG-NGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARG-YQSSATM-SDGRVFTIGGSWSGGVFEKNGEVYSPS  322 (656)
T ss_dssp             CEEEECT-TSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCS-SCEEEEC-TTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred             ccccCCC-CCCEEEeCCCCCCceEEecCcCCceeECCCCCcccc-ccceEEe-cCCeEEEEeCcccCCcccccceEeCCC
Confidence            3466777 8899999984 5689999998876544322111111 2233443 4788888888 44     578999998


Q ss_pred             CCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC---------CCcEEEEECCCCcEEEEEccccC-------
Q 004969          530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY---------SKNIALYDINSGRRLQVFADMHK-------  593 (721)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~---------Dg~IrlWDl~s~~~v~~l~~~h~-------  593 (721)
                      +..................+.     ..+..++..++.++.         ...+..||..+......... +.       
T Consensus       323 t~~W~~~~~~~~~p~~~~~~~-----~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~-~~~~~~~~~  396 (656)
T 1k3i_A          323 SKTWTSLPNAKVNPMLTADKQ-----GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGK-RQSNRGVAP  396 (656)
T ss_dssp             TTEEEEETTSCSGGGCCCCTT-----GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEE-CEETTEECC
T ss_pred             CCcceeCCCcccccccccccc-----ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCc-cccccccCC
Confidence            754321100000000000000     001122333344433         34678899987764433321 21       


Q ss_pred             --CCeEEEEEcCCCCcEEEEEECCC-----------cEEEEECCCCCceeEE--EecCCCCeEEEEEecCCCEEEEEeCC
Q 004969          594 --EHINVVKFSNHSPSIFATSSFDQ-----------DVKLWDLRQKPIQPCY--TASSSKGNVMVCFSPDDHYLLGKGSG  658 (721)
Q Consensus       594 --~~V~sI~fsPdg~~lLaSgs~Dg-----------tIrIWDlrs~~~~~~~--~~~~~~~~vsl~fSpdg~~Lasgs~D  658 (721)
                        ..-.++.|...+..+++.|+.++           .|.+||..+.....+.  .+.......+++..|+|+.++.|+.+
T Consensus       397 ~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~  476 (656)
T 1k3i_A          397 DAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR  476 (656)
T ss_dssp             CCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred             CCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcc
Confidence              12345555443337888888543           6888998876543332  22221122256777899999998854


Q ss_pred             -----------CcEEEEEcCCCccccc------ccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          659 -----------TSMFVQSLRGDPFRDF------NMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       659 -----------g~I~VWDl~g~~l~~~------~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                                 ..+.+||.........      ......+...|++       .+++.||..
T Consensus       477 ~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg-------~v~v~GG~~  531 (656)
T 1k3i_A          477 RGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDG-------RVFNGGGGL  531 (656)
T ss_dssp             BCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTS-------CEEEEECCC
T ss_pred             cCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCc-------EEEecCCCC
Confidence                       4678999764332111      1122344556888       889998864

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=97.69  E-value=1e-05  Score=82.32  Aligned_cols=106  Identities=19%  Similarity=0.218  Sum_probs=79.3

Q ss_pred             cccceEeeccCCchhhHHHHHhhcCCccceEeeccccccccccc--ccccceeeEEecccccccccccccccccccccch
Q 004969           99 DQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLIC  176 (721)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  176 (721)
                      ...|+.++|+++.+..-.- ..+..=-.=+.|+|++|+|..+.-  ++.+++|++|+|. .|.|+.+..+.|..||+|+.
T Consensus        34 ~~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~  111 (251)
T 3m19_A           34 PADTEKLDLQSTGLATLSD-ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA-NNQLASLPLGVFDHLTQLDK  111 (251)
T ss_dssp             CTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT-TSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCCEEEccCCCcCccCH-hHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC-CCcccccChhHhcccCCCCE
Confidence            3578888888876643211 111111245779999999988765  6788999999999 88899999999999999999


Q ss_pred             hccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969          177 LSMCETRVGNLWTTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (721)
                      |.|.+|++..+-  ..++.++++|++|.+..+
T Consensus       112 L~L~~N~l~~~~--~~~~~~l~~L~~L~Ls~N  141 (251)
T 3m19_A          112 LYLGGNQLKSLP--SGVFDRLTKLKELRLNTN  141 (251)
T ss_dssp             EECCSSCCCCCC--TTTTTTCTTCCEEECCSS
T ss_pred             EEcCCCcCCCcC--hhHhccCCcccEEECcCC
Confidence            999999988551  123678899999988765

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=97.68  E-value=8.5e-05  Score=80.34  Aligned_cols=135  Identities=13%  Similarity=0.200  Sum_probs=86.6

Q ss_pred             CCcceeeEeecCCccccchHHHHHHHH--HhcccceEeeccCCchhhHHHHHhhcC--C----------ccceEeecccc
Q 004969           70 ATEIEAVDVRSGTSCMLTGEFALSLMH--AIDQKLRVVDLHDSSFGKDFIRNLSQR--G----------LMCEVLNLRSS  135 (721)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----------~~~~~~~~~~~  135 (721)
                      -..+..+|+.+   +.+..+-+..+..  .-+.+|+.++|.++.++......+...  .          -.=+.|+|++|
T Consensus        93 ~~~L~~L~Ls~---n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n  169 (386)
T 2ca6_A           93 CPKLHTVRLSD---NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN  169 (386)
T ss_dssp             CTTCCEEECCS---CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred             CCcccEEECCC---CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence            36677777733   3455543333322  235789999999988875444433321  0          23456888888


Q ss_pred             cccccc------cccccceeeEEeccccccccc-----ccccccccccccchhccccccchhh--hHHHHHhhcCCcchh
Q 004969          136 RFRKLN------MIGEFKRIHTLNLDYSTSLTS-----FKEDCFSCMPNLICLSMCETRVGNL--WTTIAALSKLPSLAE  202 (721)
Q Consensus       136 ~~~~~~------~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  202 (721)
                      ++..-.      .++.+++|++|+|. .|.|+.     +....|..+|+|+.|.|.+|++..-  -.-..+|.++++|++
T Consensus       170 ~l~~~~~~~l~~~l~~~~~L~~L~L~-~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~  248 (386)
T 2ca6_A          170 RLENGSMKEWAKTFQSHRLLHTVKMV-QNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE  248 (386)
T ss_dssp             CCTGGGHHHHHHHHHHCTTCCEEECC-SSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred             CCCcHHHHHHHHHHHhCCCcCEEECc-CCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCE
Confidence            886332      44567788999998 667772     3334778889999999999988532  112346788888888


Q ss_pred             hcccee
Q 004969          203 LRFQNW  208 (721)
Q Consensus       203 ~~~~~~  208 (721)
                      |.++.|
T Consensus       249 L~L~~n  254 (386)
T 2ca6_A          249 LGLNDC  254 (386)
T ss_dssp             EECTTC
T ss_pred             EECCCC
Confidence            876654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.68  E-value=0.0011  Score=77.35  Aligned_cols=196  Identities=10%  Similarity=0.061  Sum_probs=117.0

Q ss_pred             CCeEEEEECCCCeEEEEeecCC-CC----------------------------CCeEEEEEeeCCCCEEEEEeCCCe---
Q 004969          475 DGEIVVVNHENENIVSYIPSFG-AM----------------------------NSVLGLCWLKKYPSKLIAGSDNGS---  522 (721)
Q Consensus       475 DG~I~IWdl~tg~~i~~l~~~~-H~----------------------------~~V~sl~fsp~d~~~LaSgs~DGt---  522 (721)
                      +|.|..+|..+|+.+..+.... ..                            .....+++. +..+.++.++.++.   
T Consensus       177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d-~~~~~vy~~~~~g~~w~  255 (668)
T 1kv9_A          177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYD-PELDLLYVGTGNGSPWN  255 (668)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEE-TTTTEEEEECCCEESSC
T ss_pred             CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEc-CCCCEEEEeCCCCCccc
Confidence            5899999999999988775311 10                            011135665 45678888877764   


Q ss_pred             ----------------EEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCC---EEEEEeCCCcEEEEECCCCc
Q 004969          523 ----------------LKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDE---LFLASGYSKNIALYDINSGR  583 (721)
Q Consensus       523 ----------------VrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~---~lls~g~Dg~IrlWDl~s~~  583 (721)
                                      |..+|..+++........+.....+....+.....+..++.   .++.++.+|.++++|..+|+
T Consensus       256 ~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~  335 (668)
T 1kv9_A          256 REVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK  335 (668)
T ss_dssp             HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             cCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence                            88999998876433221111100111112222222323453   57777889999999999999


Q ss_pred             EEEEEccccC-----------CCe------------------------EEEEEcCCCCcEEEEE----------------
Q 004969          584 RLQVFADMHK-----------EHI------------------------NVVKFSNHSPSIFATS----------------  612 (721)
Q Consensus       584 ~v~~l~~~h~-----------~~V------------------------~sI~fsPdg~~lLaSg----------------  612 (721)
                      .+........           .++                        ..++++|+.+ ++...                
T Consensus       336 ~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g-~~yv~~~~~~~~~~~~~~~~~  414 (668)
T 1kv9_A          336 LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTG-LVYIPYQEVPGVYRNEGKDFV  414 (668)
T ss_dssp             EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTT-EEEEEEEECCEEECCCGGGCC
T ss_pred             EeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCC-EEEEeccccceEeeeeccccc
Confidence            8854432010           000                        1267788763 43331                


Q ss_pred             --------------------ECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC-CCcc
Q 004969          613 --------------------SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR-GDPF  671 (721)
Q Consensus       613 --------------------s~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~l  671 (721)
                                          ..+|.|..||+.+++..-....  ........+...+.++++++.|+.++.||.+ |+.+
T Consensus       415 ~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l  492 (668)
T 1kv9_A          415 TRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY--PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL  492 (668)
T ss_dssp             CCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC--CCCCcCceeEeCCCEEEEECCcccchhhhhhcChhh
Confidence                                1247899999999865333322  2222233455578889999999999999987 5554


Q ss_pred             ccc
Q 004969          672 RDF  674 (721)
Q Consensus       672 ~~~  674 (721)
                      ..+
T Consensus       493 ~~~  495 (668)
T 1kv9_A          493 WQF  495 (668)
T ss_dssp             EEE
T ss_pred             eEe
Confidence            433

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=97.67  E-value=1.1e-05  Score=82.91  Aligned_cols=105  Identities=25%  Similarity=0.337  Sum_probs=76.5

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccc--cccccceeeEEecccccccccccccccccccccchh
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL  177 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  177 (721)
                      .+||.++|.++.+.. .-...+..=-.=+.|+|++|++..+.  .++.+++|++|+|. .+.|+.+....|..||+|+.|
T Consensus        61 ~~L~~L~l~~n~l~~-i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L  138 (270)
T 2o6q_A           61 TKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD-RNQLKSLPPRVFDSLTKLTYL  138 (270)
T ss_dssp             TTCCEEECCSSCCSC-CCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC-SSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCEEECCCCccCe-eChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC-CCccCeeCHHHhCcCcCCCEE
Confidence            578888888876541 11112222224577889888888776  45778889999998 788888888888999999999


Q ss_pred             ccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969          178 SMCETRVGNLWTTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (721)
                      .+.+|++..+-  ..++.++++|++|++..+
T Consensus       139 ~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n  167 (270)
T 2o6q_A          139 SLGYNELQSLP--KGVFDKLTSLKELRLYNN  167 (270)
T ss_dssp             ECCSSCCCCCC--TTTTTTCTTCCEEECCSS
T ss_pred             ECCCCcCCccC--HhHccCCcccceeEecCC
Confidence            99998887552  234778888888887654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.67  E-value=1.1e-05  Score=77.52  Aligned_cols=105  Identities=13%  Similarity=0.226  Sum_probs=66.0

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeeccccccccccc--ccccceeeEEecccccccccccccccccccccchh
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL  177 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  177 (721)
                      .+|+.++|.++.+.. .....+..=-.=+.|+|++|+|..+..  ++.+.+|++|+|. .|.|+.+....|..||+|+.|
T Consensus        28 ~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~N~l~~~~~~~~~~l~~L~~L  105 (177)
T 2o6r_A           28 SSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH-ENKLQSLPNGVFDKLTQLKEL  105 (177)
T ss_dssp             TTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCcEEEeCCCcccE-eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC-CCCccccCHHHhhCCcccCEE
Confidence            466777777665542 111111111234667777777777654  5677777778877 667777777777777888888


Q ss_pred             ccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969          178 SMCETRVGNLWTTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (721)
                      .|.+|++..+=.  .++.++++|++|.++..
T Consensus       106 ~l~~N~l~~~~~--~~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A          106 ALDTNQLKSVPD--GIFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             ECCSSCCSCCCT--TTTTTCTTCCEEECCSS
T ss_pred             ECcCCcceEeCH--HHhcCCcccCEEEecCC
Confidence            887777765411  23566777777766543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=97.66  E-value=2.1e-05  Score=82.79  Aligned_cols=99  Identities=22%  Similarity=0.290  Sum_probs=70.5

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhcc
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM  179 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (721)
                      .+|+.++|+++.+..-  .. ...=-.=+.|+|+.|++..+.-++.+++|++|+|. .+.|+.+..  |..||+|+.|.|
T Consensus        63 ~~L~~L~L~~n~i~~~--~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~-~n~l~~~~~--l~~l~~L~~L~l  136 (308)
T 1h6u_A           63 NNLIGLELKDNQITDL--AP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLT-STQITDVTP--LAGLSNLQVLYL  136 (308)
T ss_dssp             TTCCEEECCSSCCCCC--GG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECT-TSCCCCCGG--GTTCTTCCEEEC
T ss_pred             CCCCEEEccCCcCCCC--hh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECC-CCCCCCchh--hcCCCCCCEEEC
Confidence            5688888887755421  11 11222456788888888888877888888888888 677888754  888888888888


Q ss_pred             ccccchhhhHHHHHhhcCCcchhhcccee
Q 004969          180 CETRVGNLWTTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (721)
                      .+|++..+    .++.++++|++|.+..|
T Consensus       137 ~~n~l~~~----~~l~~l~~L~~L~l~~n  161 (308)
T 1h6u_A          137 DLNQITNI----SPLAGLTNLQYLSIGNA  161 (308)
T ss_dssp             CSSCCCCC----GGGGGCTTCCEEECCSS
T ss_pred             CCCccCcC----ccccCCCCccEEEccCC
Confidence            88887765    45778888888876544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.66  E-value=7.4e-06  Score=80.13  Aligned_cols=98  Identities=16%  Similarity=0.285  Sum_probs=69.6

Q ss_pred             eEeeccCCchhhHHHHHhhcCCccceEeeccccccccccc---ccccceeeEEecccccccccccccccccccccchhcc
Q 004969          103 RVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNM---IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM  179 (721)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (721)
                      +.|++.++.++. +=.++..   .-+.|+|++|+|..+..   ++.+.+|++|+|+ .|.|+.+..+.|..|++|+.|.|
T Consensus        11 ~~l~~s~~~l~~-ip~~~~~---~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~L   85 (192)
T 1w8a_A           11 TTVDCTGRGLKE-IPRDIPL---HTTELLLNDNELGRISSDGLFGRLPHLVKLELK-RNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TEEECTTSCCSS-CCSCCCT---TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECC-SSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CEEEcCCCCcCc-CccCCCC---CCCEEECCCCcCCccCCccccccCCCCCEEECC-CCCCCCcCHhHcCCcccCCEEEC
Confidence            566777655431 1111221   55778888888888753   6788888888888 77888888888888888888888


Q ss_pred             ccccchhhhHHHHHhhcCCcchhhccce
Q 004969          180 CETRVGNLWTTIAALSKLPSLAELRFQN  207 (721)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (721)
                      .+|++..+-  ..++.+|++|++|+++.
T Consensus        86 s~N~l~~~~--~~~~~~l~~L~~L~L~~  111 (192)
T 1w8a_A           86 GENKIKEIS--NKMFLGLHQLKTLNLYD  111 (192)
T ss_dssp             CSCCCCEEC--SSSSTTCTTCCEEECCS
T ss_pred             CCCcCCccC--HHHhcCCCCCCEEECCC
Confidence            888887652  13367788888887654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.65  E-value=7.6e-06  Score=80.06  Aligned_cols=105  Identities=17%  Similarity=0.246  Sum_probs=79.6

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeeccccccccc--ccccccceeeEEecccccccccccccccccccccchh
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKL--NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL  177 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  177 (721)
                      .+|+.++|+++.++.-.-..++..=-.=+.|+|++|+|..+  ..++.+.+|++|+|. .|.|+.+...-|..||+|+.|
T Consensus        29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L  107 (192)
T 1w8a_A           29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG-ENKIKEISNKMFLGLHQLKTL  107 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC-SCCCCEECSSSSTTCTTCCEE
T ss_pred             CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC-CCcCCccCHHHhcCCCCCCEE
Confidence            37888888887764311111111112357899999999988  567889999999999 889999999999999999999


Q ss_pred             ccccccchhhhHHHHHhhcCCcchhhccce
Q 004969          178 SMCETRVGNLWTTIAALSKLPSLAELRFQN  207 (721)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (721)
                      .+.+|++..+-  -.++.++++|++|+++.
T Consensus       108 ~L~~N~l~~~~--~~~~~~l~~L~~L~L~~  135 (192)
T 1w8a_A          108 NLYDNQISCVM--PGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             ECCSSCCCEEC--TTSSTTCTTCCEEECTT
T ss_pred             ECCCCcCCeeC--HHHhhcCCCCCEEEeCC
Confidence            99999988652  24577888999887754

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.65  E-value=0.031  Score=58.56  Aligned_cols=186  Identities=10%  Similarity=0.025  Sum_probs=115.4

Q ss_pred             CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeE
Q 004969          475 DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLT  554 (721)
Q Consensus       475 DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~  554 (721)
                      ...|+..|+.++.....+.   ....+.+++|.+.++..+++-...+.|..+++.+.... .    ......-.......
T Consensus         9 ~~~I~~i~~~~~~~~~~~~---~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~-~----~~~~~~~~~~~~p~   80 (316)
T 1ijq_A            9 RHEVRKMTLDRSEYTSLIP---NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-S----SYDTVISRDIQAPD   80 (316)
T ss_dssp             BSSEEEEETTSCCCEEEEC---SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-------------CEEEECSSCSCCC
T ss_pred             CCeEEEEECCCcceEehhc---CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCC-c----ccEEEEeCCCCCcC
Confidence            3569999998876655553   23568899998545556666667789999998762100 0    00001001113457


Q ss_pred             EEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECC-CcEEEEECCCCCceeEE
Q 004969          555 SVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD-QDVKLWDLRQKPIQPCY  632 (721)
Q Consensus       555 sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~D-gtIrIWDlrs~~~~~~~  632 (721)
                      .+++.+.++.++.+. ..+.|.++|+........+.. .......++++|.++.++++.... +.|..+++..... ...
T Consensus        81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~-~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~-~~~  158 (316)
T 1ijq_A           81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE-NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSL  158 (316)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC-TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEE
T ss_pred             EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEEC-CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe-EEE
Confidence            888877677666664 578899999875443333332 345678999999764566665444 7888888865432 222


Q ss_pred             EecCCCCeEEEEEecCCCEEEEEe-CCCcEEEEEcCCCc
Q 004969          633 TASSSKGNVMVCFSPDDHYLLGKG-SGTSMFVQSLRGDP  670 (721)
Q Consensus       633 ~~~~~~~~vsl~fSpdg~~Lasgs-~Dg~I~VWDl~g~~  670 (721)
                      ....-..+..++++|++..|+.+. ..+.|..+|+.|..
T Consensus       159 ~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~  197 (316)
T 1ijq_A          159 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  197 (316)
T ss_dssp             ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             EECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc
Confidence            212233455899999877776655 45689999988643

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=97.64  E-value=1.7e-05  Score=73.74  Aligned_cols=108  Identities=19%  Similarity=0.253  Sum_probs=69.7

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhcc
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM  179 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (721)
                      .+|+.++|.++.+....+......=-.-+.|+|++|++..+..++.+++|.+|+|. .|.|+..-...|..||+|+.|.|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELS-DNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECC-SSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECC-CCcccchHHHHhhhCCCCCEEEC
Confidence            56777777776654212222222223456777777777777777777777777777 66777744456666777777777


Q ss_pred             ccccchhhhHHHHHhhcCCcchhhccceee
Q 004969          180 CETRVGNLWTTIAALSKLPSLAELRFQNWL  209 (721)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (721)
                      .+|++..+ ....++..+++|++|++..|-
T Consensus        96 s~N~i~~~-~~~~~~~~l~~L~~L~l~~N~  124 (149)
T 2je0_A           96 SGNKIKDL-STIEPLKKLENLKSLDLFNCE  124 (149)
T ss_dssp             TTSCCCSH-HHHGGGGGCTTCCEEECTTCG
T ss_pred             CCCcCCCh-HHHHHHhhCCCCCEEeCcCCc
Confidence            77777654 233566777777777776653

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.63  E-value=0.0065  Score=63.43  Aligned_cols=196  Identities=14%  Similarity=0.093  Sum_probs=115.6

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeec-CC-CCCCeEEEEEeeC-CCCEEEEEeC------------
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPS-FG-AMNSVLGLCWLKK-YPSKLIAGSD------------  519 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~-~~-H~~~V~sl~fsp~-d~~~LaSgs~------------  519 (721)
                      .+..+++.+.++ .|..+...+.|..+|..++........ .+ .......+++. + +++..++-..            
T Consensus        81 ~p~gi~~~~~~g-~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d-~~~G~l~v~d~~~~~~~~~~~~~~  158 (322)
T 2fp8_A           81 RTYDISYNLQNN-QLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVD-QRTGIVYFTDVSTLYDDRGVQQIM  158 (322)
T ss_dssp             CEEEEEEETTTT-EEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEEC-TTTCCEEEEESCSSCCTTCHHHHH
T ss_pred             CCceEEEcCCCC-cEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEe-cCCCEEEEECCcccccccccceeh
Confidence            488999997344 455555555688898776543221111 01 12356788886 5 6766665432            


Q ss_pred             -----CCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCc--EEEEEccc
Q 004969          520 -----NGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGR--RLQVFADM  591 (721)
Q Consensus       520 -----DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~--~v~~l~~~  591 (721)
                           +|.|..||..+++..          ...........+++++++..++++. ..+.|..||+....  ....+.. 
T Consensus       159 ~~~~~~g~v~~~d~~~~~~~----------~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-  227 (322)
T 2fp8_A          159 DTSDKTGRLIKYDPSTKETT----------LLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-  227 (322)
T ss_dssp             HHTCCCEEEEEEETTTTEEE----------EEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-
T ss_pred             cccCCCceEEEEeCCCCEEE----------EeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-
Confidence                 367888887654321          0011112346789999988776664 46889999987521  1222221 


Q ss_pred             cCCCeEEEEEcCCCCcEEEEEEC----------CCcEEEEECCCCCceeEEEecCC---CCeEEEEEecCCCEEEEEeCC
Q 004969          592 HKEHINVVKFSNHSPSIFATSSF----------DQDVKLWDLRQKPIQPCYTASSS---KGNVMVCFSPDDHYLLGKGSG  658 (721)
Q Consensus       592 h~~~V~sI~fsPdg~~lLaSgs~----------DgtIrIWDlrs~~~~~~~~~~~~---~~~vsl~fSpdg~~Lasgs~D  658 (721)
                      ..+ ...+++.++| ++.++...          .+.|..+|.. ++....+.....   .....+++ .+++.+++....
T Consensus       228 ~~g-P~gi~~d~~G-~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~  303 (322)
T 2fp8_A          228 IPN-PGNIKRNADG-HFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFH  303 (322)
T ss_dssp             CSS-EEEEEECTTS-CEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSC
T ss_pred             CCC-CCCeEECCCC-CEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCC
Confidence            223 7889999999 66666544          4668888875 443333333321   12225555 466666665667


Q ss_pred             CcEEEEEcC
Q 004969          659 TSMFVQSLR  667 (721)
Q Consensus       659 g~I~VWDl~  667 (721)
                      +.|.++++.
T Consensus       304 ~~i~~~~~~  312 (322)
T 2fp8_A          304 GSVGILVYD  312 (322)
T ss_dssp             SEEEEEEC-
T ss_pred             CceEEEecc
Confidence            889999886

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=97.63  E-value=3.1e-05  Score=81.53  Aligned_cols=121  Identities=17%  Similarity=0.283  Sum_probs=91.6

Q ss_pred             CcceeeEeecCCccccchHHHHHHHHHhcccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceee
Q 004969           71 TEIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIH  150 (721)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (721)
                      ..+..+|+.+-.-..+..      + .--.+|+.++|+.+.+..-  ..+ ..=-.=+.|+|++|++..+..++.+++|+
T Consensus        63 ~~L~~L~L~~n~i~~~~~------~-~~l~~L~~L~L~~n~l~~~--~~~-~~l~~L~~L~l~~n~l~~~~~l~~l~~L~  132 (308)
T 1h6u_A           63 NNLIGLELKDNQITDLAP------L-KNLTKITELELSGNPLKNV--SAI-AGLQSIKTLDLTSTQITDVTPLAGLSNLQ  132 (308)
T ss_dssp             TTCCEEECCSSCCCCCGG------G-TTCCSCCEEECCSCCCSCC--GGG-TTCTTCCEEECTTSCCCCCGGGTTCTTCC
T ss_pred             CCCCEEEccCCcCCCChh------H-ccCCCCCEEEccCCcCCCc--hhh-cCCCCCCEEECCCCCCCCchhhcCCCCCC
Confidence            566777774432222222      1 1236899999999876542  221 11234578999999999999999999999


Q ss_pred             EEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969          151 TLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       151 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (721)
                      +|+|+ .|.|+.+..  |..+|+|+.|.|.+|++..+    .++.++++|++|++..|
T Consensus       133 ~L~l~-~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~l~~n  183 (308)
T 1h6u_A          133 VLYLD-LNQITNISP--LAGLTNLQYLSIGNAQVSDL----TPLANLSKLTTLKADDN  183 (308)
T ss_dssp             EEECC-SSCCCCCGG--GGGCTTCCEEECCSSCCCCC----GGGTTCTTCCEEECCSS
T ss_pred             EEECC-CCccCcCcc--ccCCCCccEEEccCCcCCCC----hhhcCCCCCCEEECCCC
Confidence            99999 789999876  99999999999999999876    56999999999987654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.63  E-value=1.3e-05  Score=83.83  Aligned_cols=103  Identities=21%  Similarity=0.285  Sum_probs=64.5

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeeccccccccc--ccccccceeeEEecccccccccccccccccccccchh
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKL--NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL  177 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  177 (721)
                      .+|+.++|+++.+..  +-.....--+=+.|+|++|+|..+  +.++.+.+|++|+|. .|.|+.+..+.|..+++|+.|
T Consensus        77 ~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L  153 (290)
T 1p9a_G           77 PVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK-GNELKTLPPGLLTPTPKLEKL  153 (290)
T ss_dssp             TTCCEEECCSSCCSS--CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECT-TSCCCCCCTTTTTTCTTCCEE
T ss_pred             CcCCEEECCCCcCCc--CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECC-CCCCCccChhhcccccCCCEE
Confidence            457777777765541  111111112336677777777777  346677777777777 667777777777777777777


Q ss_pred             ccccccchhhhHHHHHhhcCCcchhhccce
Q 004969          178 SMCETRVGNLWTTIAALSKLPSLAELRFQN  207 (721)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (721)
                      .+.+|++..+-.  .++.+|++|++|.++.
T Consensus       154 ~L~~N~l~~l~~--~~~~~l~~L~~L~L~~  181 (290)
T 1p9a_G          154 SLANNNLTELPA--GLLNGLENLDTLLLQE  181 (290)
T ss_dssp             ECTTSCCSCCCT--TTTTTCTTCCEEECCS
T ss_pred             ECCCCcCCccCH--HHhcCcCCCCEEECCC
Confidence            777777765421  2356677777776554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.62  E-value=0.0091  Score=65.77  Aligned_cols=157  Identities=10%  Similarity=0.158  Sum_probs=97.3

Q ss_pred             CeEEEEEeC-CCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeC-CC----eEEEEEc
Q 004969          455 RPRQFEYHP-SISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD-NG----SLKLYDI  528 (721)
Q Consensus       455 ~V~~lafsP-~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~-DG----tVrIWDi  528 (721)
                      .+..++++| .++.++++ ...+.|+.+|..++.......   ......+|+|. ++++.|+.+.. .+    .+.+.+.
T Consensus       138 ~P~~lavdp~~~g~Lyv~-d~~~~I~~id~~~~~v~~~~~---~~~~P~~ia~d-~~G~~lyvad~~~~~~~~~v~~~~~  212 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLV-GEQHPTRLIDFEKEYVSTVYS---GLSKVRTICWT-HEADSMIITNDQNNNDRPNNYILTR  212 (430)
T ss_dssp             CCCEEEEETTEEEEEEEE-EBTEEEEEEETTTTEEEEEEC---CCSCEEEEEEC-TTSSEEEEEECCSCTTSEEEEEEEG
T ss_pred             CCCEEEECCCCCCeEEEE-eCCCcEEEEECCCCEEEEEec---CCCCcceEEEe-CCCCEEEEEeCCCCcccceEEEEeC
Confidence            588999998 24554444 444889999998776554443   34568899998 67775555544 22    3333443


Q ss_pred             CCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCc
Q 004969          529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPS  607 (721)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~  607 (721)
                      .. ....        ...+........++++|+++.++++. ..+.|..+|...+................++|+|+|..
T Consensus       213 ~g-~~~~--------~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~  283 (430)
T 3tc9_A          213 ES-GFKV--------ITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNY  283 (430)
T ss_dssp             GG-TSCS--------EEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSE
T ss_pred             CC-ceee--------eeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCE
Confidence            32 2110        01111223357788989555555554 57889999998766533332212345789999999943


Q ss_pred             EEEEEECCCcEEEEECCC
Q 004969          608 IFATSSFDQDVKLWDLRQ  625 (721)
Q Consensus       608 lLaSgs~DgtIrIWDlrs  625 (721)
                      ++++-...+.|..++...
T Consensus       284 lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          284 AYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             EEEEETTTTEEEEEEEET
T ss_pred             EEEEECCCCEEEEEeCCc
Confidence            666666788899987653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.61  E-value=1.5e-05  Score=79.85  Aligned_cols=101  Identities=20%  Similarity=0.355  Sum_probs=82.0

Q ss_pred             ccceEeeccCCchhh---HHHHHhhcCCccceEeeccccccccccc--ccccceeeEEeccccccccccccccccccccc
Q 004969          100 QKLRVVDLHDSSFGK---DFIRNLSQRGLMCEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNL  174 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  174 (721)
                      .+|+.++|+++.+..   +.+..|    -.=+.|+|++|+|..+..  ++.+.+|++|+|+ .|.|+.+..+.|..||+|
T Consensus        56 ~~L~~L~Ls~N~i~~~~~~~~~~l----~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L  130 (220)
T 2v9t_B           56 KKLRRIDLSNNQISELAPDAFQGL----RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN-ANKINCLRVDAFQDLHNL  130 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTC----SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTC
T ss_pred             CCCCEEECCCCcCCCcCHHHhhCC----cCCCEEECCCCcCCccCHhHccCCCCCCEEECC-CCCCCEeCHHHcCCCCCC
Confidence            579999999987643   222222    235789999999998865  6789999999999 889999999999999999


Q ss_pred             chhccccccchhhhHHHHHhhcCCcchhhccce
Q 004969          175 ICLSMCETRVGNLWTTIAALSKLPSLAELRFQN  207 (721)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (721)
                      +.|.|.+|++..+-.  .++..+++|++|.++.
T Consensus       131 ~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~  161 (220)
T 2v9t_B          131 NLLSLYDNKLQTIAK--GTFSPLRAIQTMHLAQ  161 (220)
T ss_dssp             CEEECCSSCCSCCCT--TTTTTCTTCCEEECCS
T ss_pred             CEEECCCCcCCEECH--HHHhCCCCCCEEEeCC
Confidence            999999999987632  3577889999988764

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.61  E-value=0.0024  Score=73.36  Aligned_cols=194  Identities=12%  Similarity=0.044  Sum_probs=115.6

Q ss_pred             EEEEeCCCCCEEEEEEC--------------------C----CeEEEEECCCCeEEEEeecCCCC--------CCeEEEE
Q 004969          458 QFEYHPSISCLMVFGTL--------------------D----GEIVVVNHENENIVSYIPSFGAM--------NSVLGLC  505 (721)
Q Consensus       458 ~lafsP~dg~~LasGs~--------------------D----G~I~IWdl~tg~~i~~l~~~~H~--------~~V~sl~  505 (721)
                      ..++.| ...+++.+..                    |    +.|.-+|..+|+.+..++...|.        .++. +.
T Consensus       250 ~~a~d~-~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~  327 (582)
T 1flg_A          250 SASFDA-ETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FD  327 (582)
T ss_dssp             CCEEET-TTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EE
T ss_pred             CceEcC-CCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Ee
Confidence            356777 5666776663                    2    68999999999999888754442        2222 12


Q ss_pred             EeeCCC---CEEEEEeCCCeEEEEEcCCCCCcccccccC------------ccee---------------------Eecc
Q 004969          506 WLKKYP---SKLIAGSDNGSLKLYDIRHMPPSIRGMHYG------------AGTV---------------------TFDE  549 (721)
Q Consensus       506 fsp~d~---~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~------------~~~~---------------------~~~~  549 (721)
                      ....++   ..++.++.+|.+.++|..+++.........            ...+                     .+..
T Consensus       328 ~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~  407 (582)
T 1flg_A          328 YKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPP  407 (582)
T ss_dssp             EECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSC
T ss_pred             eecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcC
Confidence            110245   378889999999999999887643221111            0000                     0000


Q ss_pred             ---CCCeEEEEEecCCCEEEEEe---------------------------------CCCcEEEEECCCCcEEEEEccccC
Q 004969          550 ---FDQLTSVHVNSMDELFLASG---------------------------------YSKNIALYDINSGRRLQVFADMHK  593 (721)
Q Consensus       550 ---~~~V~sv~~sp~~~~lls~g---------------------------------~Dg~IrlWDl~s~~~v~~l~~~h~  593 (721)
                         ...-..++++|..+.+++..                                 .+|.|..||+.+++.+.....  .
T Consensus       408 ~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~--~  485 (582)
T 1flg_A          408 FLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKE--H  485 (582)
T ss_dssp             TTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEE--S
T ss_pred             CccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecC--C
Confidence               00012345666555555432                                 257899999999999988763  2


Q ss_pred             CCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCC-EEEEEe
Q 004969          594 EHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDH-YLLGKG  656 (721)
Q Consensus       594 ~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~-~Lasgs  656 (721)
                      ..+..-.....+ .+++.|+.|+.++.||.++++..-.+.........-+.|..+|+ |+++.+
T Consensus       486 ~~~~~g~~~tag-glvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~  548 (582)
T 1flg_A          486 LPLWAGVLATAG-NLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTV  548 (582)
T ss_dssp             SCCCSCCEEETT-TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             CCCcccceEeCC-CEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEEc
Confidence            222221112234 47778999999999999999765444443221111367778887 444433

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=97.61  E-value=1.5e-05  Score=82.20  Aligned_cols=78  Identities=22%  Similarity=0.331  Sum_probs=41.2

Q ss_pred             eEeeccccccccccc--ccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhcc
Q 004969          128 EVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRF  205 (721)
Q Consensus       128 ~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (721)
                      +.|+|++|+|..+..  ++.+++|++|+|. .|.|+.+....|..||+|+.|.|.+|++..+=  -.++.++++|++|.+
T Consensus        88 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l  164 (272)
T 3rfs_A           88 TYLILTGNQLQSLPNGVFDKLTNLKELVLV-ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP--KGVFDKLTNLTELDL  164 (272)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECT-TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEEC
T ss_pred             CEEECCCCccCccChhHhcCCcCCCEEECC-CCcCCccCHHHhccCCCCCEEECCCCccCccC--HHHhccCccCCEEEC
Confidence            445555555555443  4455555555555 45555555555555555555555555554331  112445555555555


Q ss_pred             cee
Q 004969          206 QNW  208 (721)
Q Consensus       206 ~~~  208 (721)
                      ..|
T Consensus       165 ~~n  167 (272)
T 3rfs_A          165 SYN  167 (272)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.60  E-value=1.1e-05  Score=80.87  Aligned_cols=76  Identities=14%  Similarity=0.222  Sum_probs=38.7

Q ss_pred             eEeeccccccccccc--ccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhcc
Q 004969          128 EVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRF  205 (721)
Q Consensus       128 ~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (721)
                      +.|+|++|+|..+..  ++.+.+|++|+|. .|.|+.+..+.|..||+|+.|.|.+|++..+-  -.++.+|++|++|++
T Consensus        60 ~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L  136 (220)
T 2v70_A           60 RKINFSNNKITDIEEGAFEGASGVNEILLT-SNRLENVQHKMFKGLESLKTLMLRSNRITCVG--NDSFIGLSSVRLLSL  136 (220)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECC-SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBC--TTSSTTCTTCSEEEC
T ss_pred             CEEECCCCcCCEECHHHhCCCCCCCEEECC-CCccCccCHhHhcCCcCCCEEECCCCcCCeEC--HhHcCCCccCCEEEC
Confidence            445555555555442  4455555555555 45555555555555555555555555554331  123444555555544


Q ss_pred             c
Q 004969          206 Q  206 (721)
Q Consensus       206 ~  206 (721)
                      +
T Consensus       137 ~  137 (220)
T 2v70_A          137 Y  137 (220)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.59  E-value=3.1e-05  Score=79.67  Aligned_cols=98  Identities=20%  Similarity=0.236  Sum_probs=77.4

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhcc
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM  179 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (721)
                      .+|+.++|.++.+..--  . ...=-.-+.|+|++|++..+.-+.. .+|.+|+|+ .|.|+.++  .|..||+|+.|.+
T Consensus        63 ~~L~~L~L~~N~i~~~~--~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~-~N~l~~~~--~l~~l~~L~~L~L  135 (263)
T 1xeu_A           63 TNLKELHLSHNQISDLS--P-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLD-NNELRDTD--SLIHLKNLEILSI  135 (263)
T ss_dssp             TTCCEEECCSSCCCCCG--G-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECC-SSCCSBSG--GGTTCTTCCEEEC
T ss_pred             CCCCEEECCCCccCCCh--h-hccCCCCCEEECCCCccCCcCcccc-CcccEEEcc-CCccCCCh--hhcCcccccEEEC
Confidence            57899999987664311  1 1122345789999999999877666 999999999 78999984  5999999999999


Q ss_pred             ccccchhhhHHHHHhhcCCcchhhcccee
Q 004969          180 CETRVGNLWTTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (721)
                      .+|++..+    .++.+|++|++|++..|
T Consensus       136 s~N~i~~~----~~l~~l~~L~~L~L~~N  160 (263)
T 1xeu_A          136 RNNKLKSI----VMLGFLSKLEVLDLHGN  160 (263)
T ss_dssp             TTSCCCBC----GGGGGCTTCCEEECTTS
T ss_pred             CCCcCCCC----hHHccCCCCCEEECCCC
Confidence            99999877    58999999999987654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.57  E-value=2.1e-05  Score=77.09  Aligned_cols=79  Identities=19%  Similarity=0.338  Sum_probs=69.3

Q ss_pred             cceEeeccccccccc-ccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhc
Q 004969          126 MCEVLNLRSSRFRKL-NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELR  204 (721)
Q Consensus       126 ~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (721)
                      .-+.|+|++|+|..+ ..++.+.+|++|+|+ .|.|+.+..+-|..|++|+.|.|.+|++..+=  -.++.+|++|+.|.
T Consensus        32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls-~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~--~~~f~~l~~L~~L~  108 (193)
T 2wfh_A           32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLS-NNRISTLSNQSFSNMTQLLTLILSYNRLRCIP--PRTFDGLKSLRLLS  108 (193)
T ss_dssp             TCCEEECCSSCCCSCCGGGGGCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC--TTTTTTCTTCCEEE
T ss_pred             CCCEEECCCCcCchhHHHhhcccCCCEEECC-CCcCCEeCHhHccCCCCCCEEECCCCccCEeC--HHHhCCCCCCCEEE
Confidence            457899999999988 577888999999999 89999999999999999999999999998762  23688999999997


Q ss_pred             cce
Q 004969          205 FQN  207 (721)
Q Consensus       205 ~~~  207 (721)
                      ++.
T Consensus       109 L~~  111 (193)
T 2wfh_A          109 LHG  111 (193)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.57  E-value=0.019  Score=60.51  Aligned_cols=201  Identities=9%  Similarity=0.055  Sum_probs=126.1

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEE-EEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIV-SYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i-~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      +.+++|++.++.++.+-...+.|..++...+... ..+.  .......++++.+..+.++++-...+.|.+++.......
T Consensus        37 ~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~--~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~  114 (318)
T 3sov_A           37 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV--SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK  114 (318)
T ss_dssp             EEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEE--ECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             cEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEc--CCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence            6789999955666666667789999998765321 1121  112345677776445566666667789999998764321


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC--CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY--SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS  612 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~--Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg  612 (721)
                      .         ...........++++|.++.++.+..  .+.|...++.. +....+....-...+.++++|++..+.++-
T Consensus       115 ~---------l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~l~~Pnglavd~~~~~lY~aD  184 (318)
T 3sov_A          115 V---------LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINSEIYWPNGLTLDYEEQKLYWAD  184 (318)
T ss_dssp             E---------EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred             E---------EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEEEEECCCCCccEEEEeccCCEEEEEE
Confidence            1         11122234588999988888777763  57888888863 333333211345678999999775666666


Q ss_pred             ECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC-CCc
Q 004969          613 SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR-GDP  670 (721)
Q Consensus       613 s~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~  670 (721)
                      +..+.|..+|+.......+. ......+..+++.. +..+.+-...+.|..++.. |..
T Consensus       185 ~~~~~I~~~d~dG~~~~~~~-~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~  241 (318)
T 3sov_A          185 AKLNFIHKSNLDGTNRQAVV-KGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEG  241 (318)
T ss_dssp             TTTTEEEEEETTSCSCEEEE-CSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred             CCCCEEEEEcCCCCceEEEe-cCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCc
Confidence            77889999998754332222 12233455677753 3444444556788888874 543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=97.56  E-value=3.2e-05  Score=79.65  Aligned_cols=79  Identities=22%  Similarity=0.317  Sum_probs=54.7

Q ss_pred             ceEeecccccccccccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhccc
Q 004969          127 CEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQ  206 (721)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (721)
                      -+.|+|+.|++..+..++.+++|++|+|. .+.|+.+....|..||+|+.|.|.+|++..+-  -.++.++++|++|.++
T Consensus        65 L~~L~l~~n~l~~~~~l~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~  141 (272)
T 3rfs_A           65 VRYLALGGNKLHDISALKELTNLTYLILT-GNQLQSLPNGVFDKLTNLKELVLVENQLQSLP--DGVFDKLTNLTYLNLA  141 (272)
T ss_dssp             CCEEECTTSCCCCCGGGTTCTTCCEEECT-TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECC
T ss_pred             CcEEECCCCCCCCchhhcCCCCCCEEECC-CCccCccChhHhcCCcCCCEEECCCCcCCccC--HHHhccCCCCCEEECC
Confidence            35677777777777777777777777777 66777777777777777777777777776441  1225677777777776


Q ss_pred             ee
Q 004969          207 NW  208 (721)
Q Consensus       207 ~~  208 (721)
                      .|
T Consensus       142 ~n  143 (272)
T 3rfs_A          142 HN  143 (272)
T ss_dssp             SS
T ss_pred             CC
Confidence            65

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=97.54  E-value=3.8e-05  Score=81.56  Aligned_cols=103  Identities=13%  Similarity=0.226  Sum_probs=73.6

Q ss_pred             cccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhc
Q 004969           99 DQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLS  178 (721)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (721)
                      ..+|+.++|.++.+..---   ...--.=+.|+|++|++..+..++.+++|++|+|+ .+.|+.+  ..|..+|+|+.|.
T Consensus       220 ~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~-~n~l~~~--~~~~~l~~L~~L~  293 (347)
T 4fmz_A          220 MTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVG-SNQISDI--SVLNNLSQLNSLF  293 (347)
T ss_dssp             CTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECC-SSCCCCC--GGGGGCTTCSEEE
T ss_pred             CCcCCEEEccCCccCCCcc---hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEcc-CCccCCC--hhhcCCCCCCEEE
Confidence            3678888888876543211   12222346788888888888878888888888888 6678887  4588888888888


Q ss_pred             cccccchhhhHHHHHhhcCCcchhhccceee
Q 004969          179 MCETRVGNLWTTIAALSKLPSLAELRFQNWL  209 (721)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (721)
                      +.+|++...  ...++.++++|++|.++.|-
T Consensus       294 L~~n~l~~~--~~~~l~~l~~L~~L~L~~n~  322 (347)
T 4fmz_A          294 LNNNQLGNE--DMEVIGGLTNLTTLFLSQNH  322 (347)
T ss_dssp             CCSSCCCGG--GHHHHHTCTTCSEEECCSSS
T ss_pred             CcCCcCCCc--ChhHhhccccCCEEEccCCc
Confidence            888887654  33567788888888877663

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.54  E-value=0.022  Score=60.75  Aligned_cols=197  Identities=7%  Similarity=0.025  Sum_probs=123.7

Q ss_pred             EEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCccc
Q 004969          457 RQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIR  536 (721)
Q Consensus       457 ~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~  536 (721)
                      +|.+..+ ++ +|+.+ ....|+..++........+.   ....+.+++|.+.++.++++-...+.|..+++.+....  
T Consensus        37 ~C~~~~~-~~-~ll~~-~~~~I~~i~~~g~~~~~~~~---~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~--  108 (349)
T 3v64_C           37 SCKALGP-EP-VLLFA-NRIDIRQVLPHRSEYTLLLN---NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE--  108 (349)
T ss_dssp             CEEESSS-CC-EEEEE-CBSCEEEECTTSCCEEEEEC---SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--
T ss_pred             ccccccc-Cc-eeEee-cccceEEEeCCCCeeEEeec---CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCce--
Confidence            3444444 33 34433 34568888887655544443   23458899998555555566667789999998875421  


Q ss_pred             ccccCcceeEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECC
Q 004969          537 GMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD  615 (721)
Q Consensus       537 ~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~D  615 (721)
                             .+..........+++.+.++.++.+. ..+.|.+.++........+.. .......++++|.++.++.+-...
T Consensus       109 -------~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~-~l~~P~~iavdp~~g~ly~td~~~  180 (349)
T 3v64_C          109 -------EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQ-SLEKPRAIALHPMEGTIYWTDWGN  180 (349)
T ss_dssp             -------EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECT-TCSCEEEEEEETTTTEEEEEECSS
T ss_pred             -------EEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeC-CCCCcceEEEecCcCeEEEeccCC
Confidence                   11111122346788887777776665 467899999875443333332 445678999999765677776666


Q ss_pred             -CcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEe-CCCcEEEEEcCCCc
Q 004969          616 -QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKG-SGTSMFVQSLRGDP  670 (721)
Q Consensus       616 -gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs-~Dg~I~VWDl~g~~  670 (721)
                       +.|..+++.......+ ...+-..+..++++|++..|+.+. ..+.|..+++.|..
T Consensus       181 ~~~I~r~~~dG~~~~~~-~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~  236 (349)
T 3v64_C          181 TPRIEASSMDGSGRRII-ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH  236 (349)
T ss_dssp             SCEEEEEETTSCSCEES-CCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             CCEEEEEeCCCCCcEEE-EECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCc
Confidence             8899999876432211 112233456899999777776654 45689999988643

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.54  E-value=0.004  Score=71.33  Aligned_cols=190  Identities=12%  Similarity=-0.025  Sum_probs=114.1

Q ss_pred             EEEeCCCCCEEEEEECC----------------CeEEEEECCCCeEEEEeecCCCC--------CCeEEEEEeeCCC---
Q 004969          459 FEYHPSISCLMVFGTLD----------------GEIVVVNHENENIVSYIPSFGAM--------NSVLGLCWLKKYP---  511 (721)
Q Consensus       459 lafsP~dg~~LasGs~D----------------G~I~IWdl~tg~~i~~l~~~~H~--------~~V~sl~fsp~d~---  511 (721)
                      +++.+ ....+..++.+                +.|..+|..+|+.+..++...|.        .++. +... .++   
T Consensus       240 ~a~d~-~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~-~~G~~~  316 (571)
T 2ad6_A          240 YAYDP-KLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQP-VNGKMT  316 (571)
T ss_dssp             CEEET-TTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEE-ETTEEE
T ss_pred             EEEcC-CCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-Eecc-cCCcEE
Confidence            55677 44556655532                36999999999998888754332        2222 2211 245   


Q ss_pred             CEEEEEeCCCeEEEEEcCCCCCcccccccC-c-----------ceeE-------------eccC-----CCeEEEEEecC
Q 004969          512 SKLIAGSDNGSLKLYDIRHMPPSIRGMHYG-A-----------GTVT-------------FDEF-----DQLTSVHVNSM  561 (721)
Q Consensus       512 ~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~-~-----------~~~~-------------~~~~-----~~V~sv~~sp~  561 (721)
                      ..++.++.+|.+.++|..+++......... .           ..+.             ....     ..-..++++|+
T Consensus       317 ~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~  396 (571)
T 2ad6_A          317 PLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPE  396 (571)
T ss_dssp             EEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred             EEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCC
Confidence            357788999999999999887643221111 0           0000             0000     00134567777


Q ss_pred             CCEEEEEe-------------------------------------CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCC
Q 004969          562 DELFLASG-------------------------------------YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNH  604 (721)
Q Consensus       562 ~~~lls~g-------------------------------------~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPd  604 (721)
                      .+.+++..                                     .+|.+..||+.+++.+.++..  ...+.+..+...
T Consensus       397 ~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~--~~~~~~~~~~t~  474 (571)
T 2ad6_A          397 SRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWE--KFAAWGGTLYTK  474 (571)
T ss_dssp             TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEE--SSCCCSBCEEET
T ss_pred             CCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecC--CCCccceeEEEC
Confidence            77776653                                     247899999999999988863  333333223333


Q ss_pred             CCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEE
Q 004969          605 SPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLG  654 (721)
Q Consensus       605 g~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Las  654 (721)
                      + .+++.++.|+.++.||.++++..-.+..........+.+..+|+.+++
T Consensus       475 g-g~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~  523 (571)
T 2ad6_A          475 G-GLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG  523 (571)
T ss_dssp             T-TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             C-CEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence            4 467779999999999999997654444332211113456677765543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.53  E-value=2.2e-05  Score=78.55  Aligned_cols=104  Identities=18%  Similarity=0.262  Sum_probs=81.1

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeeccccccccccc--ccccceeeEEecccccccccccccccccccccchh
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL  177 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  177 (721)
                      .+|+.++|.++.+..-. ..-+..=-.=+.|+|++|+|..+..  ++.+.+|++|+|. .|.|+.+..+.|..|++|+.|
T Consensus        57 ~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L  134 (220)
T 2v70_A           57 PQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR-SNRITCVGNDSFIGLSSVRLL  134 (220)
T ss_dssp             TTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT-TSCCCCBCTTSSTTCTTCSEE
T ss_pred             CCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC-CCcCCeECHhHcCCCccCCEE
Confidence            47999999988654210 0111122235789999999998865  7889999999999 899999999999999999999


Q ss_pred             ccccccchhhhHHHHHhhcCCcchhhccce
Q 004969          178 SMCETRVGNLWTTIAALSKLPSLAELRFQN  207 (721)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (721)
                      .+.+|++..+=  -.++.+|++|++|.++.
T Consensus       135 ~L~~N~l~~~~--~~~~~~l~~L~~L~L~~  162 (220)
T 2v70_A          135 SLYDNQITTVA--PGAFDTLHSLSTLNLLA  162 (220)
T ss_dssp             ECTTSCCCCBC--TTTTTTCTTCCEEECCS
T ss_pred             ECCCCcCCEEC--HHHhcCCCCCCEEEecC
Confidence            99999998651  14577888999887764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=97.52  E-value=2.4e-05  Score=80.43  Aligned_cols=105  Identities=17%  Similarity=0.244  Sum_probs=82.7

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeeccccccccccc--ccccceeeEEecccccccccccccccccccccchh
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL  177 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  177 (721)
                      .+|+.++|.++.+..-- ...+..=-.=+.|+|++|++..+..  ++.+.+|++|+|. .|.|+.+....|..+|+|+.|
T Consensus        85 ~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L  162 (270)
T 2o6q_A           85 KNLETLWVTDNKLQALP-IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLG-YNELQSLPKGVFDKLTSLKEL  162 (270)
T ss_dssp             TTCCEEECCSSCCCCCC-TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCEEECCCCcCCcCC-HhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECC-CCcCCccCHhHccCCccccee
Confidence            58999999988765311 1111222345789999999998865  6789999999999 789999999999999999999


Q ss_pred             ccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969          178 SMCETRVGNLWTTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (721)
                      .|.+|++..+  ...++.++++|++|.+..+
T Consensus       163 ~L~~n~l~~~--~~~~~~~l~~L~~L~L~~N  191 (270)
T 2o6q_A          163 RLYNNQLKRV--PEGAFDKLTELKTLKLDNN  191 (270)
T ss_dssp             ECCSSCCSCC--CTTTTTTCTTCCEEECCSS
T ss_pred             EecCCcCcEe--ChhHhccCCCcCEEECCCC
Confidence            9999999865  1235788999999987654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.51  E-value=0.00017  Score=77.47  Aligned_cols=161  Identities=16%  Similarity=0.209  Sum_probs=80.0

Q ss_pred             EEEeeccccCCCchhHHHHHhhcCCCcceeeEeecCCccccchHHHHHHHHHhcccceEeeccCCchhhHHHHHhhcC--
Q 004969           46 LEIILEYLKDIDFQPLLEVCMQIGATEIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKDFIRNLSQR--  123 (721)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  123 (721)
                      +.+-=.++.+.....+.+++... ...++.+|+.+-.-.....+.....++..+.+|+.++|.++.++......+.+.  
T Consensus        56 L~Ls~N~l~~~~~~~l~~~l~~~-~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~  134 (362)
T 3goz_A           56 LNLSGNSLGFKNSDELVQILAAI-PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFS  134 (362)
T ss_dssp             EECCSSCGGGSCHHHHHHHHHTS-CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHT
T ss_pred             EECcCCCCCHHHHHHHHHHHhcc-CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHH
Confidence            33333445555555555544332 245666666332222222222333333333667777777776665544443321  


Q ss_pred             --CccceEeeccccccccccc------ccccc-eeeEEeccccccccccccc----cccccc-ccchhccccccchhhh-
Q 004969          124 --GLMCEVLNLRSSRFRKLNM------IGEFK-RIHTLNLDYSTSLTSFKED----CFSCMP-NLICLSMCETRVGNLW-  188 (721)
Q Consensus       124 --~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~l~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~-  188 (721)
                        .-.=+.|+|++|+|...+.      ++.++ +|++|+|. .|.|+.....    .+..+| +|+.|.|.+|+|...= 
T Consensus       135 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls-~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~  213 (362)
T 3goz_A          135 NLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLR-GNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSY  213 (362)
T ss_dssp             TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT-TSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH
T ss_pred             hCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeec-CCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHH
Confidence              1234557777776663221      12333 67777777 5566655542    333443 7777777777766410 


Q ss_pred             -HHHHHhhcCC-cchhhcccee
Q 004969          189 -TTIAALSKLP-SLAELRFQNW  208 (721)
Q Consensus       189 -~~~~~~~~~~-~~~~~~~~~~  208 (721)
                       .-..++.+++ +|++|.+..|
T Consensus       214 ~~l~~~l~~~~~~L~~L~Ls~N  235 (362)
T 3goz_A          214 AELAYIFSSIPNHVVSLNLCLN  235 (362)
T ss_dssp             HHHHHHHHHSCTTCCEEECCSS
T ss_pred             HHHHHHHhcCCCCceEEECcCC
Confidence             0123444433 6666666554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.50  E-value=2.7e-05  Score=78.30  Aligned_cols=126  Identities=14%  Similarity=0.164  Sum_probs=89.7

Q ss_pred             CcceeeEeecCCccccchHHHHHHHHHhcccceEeeccCCchhhHHHHHhhcCCccceEeeccccccccccc--ccccce
Q 004969           71 TEIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNM--IGEFKR  148 (721)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  148 (721)
                      ..++.+|+.+-.-..+... ++   . --.+|+.++|..+.++.- -.+.+..=-.=+.|+|++|+|..+.-  ++.+++
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~-~~---~-~l~~L~~L~L~~N~l~~i-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~  113 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPG-VF---D-SLINLKELYLGSNQLGAL-PVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVH  113 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTT-TT---T-TCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCCCEEEcCCCccCccCHH-Hh---h-CccCCcEEECCCCCCCCc-ChhhcccCCCcCEEECCCCcCCccChhHhCcchh
Confidence            6677888854332222211 11   1 125899999999887431 11122222345889999999999865  678999


Q ss_pred             eeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhccc
Q 004969          149 IHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQ  206 (721)
Q Consensus       149 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (721)
                      |++|+|. +|.|+.++.. |..||+|+.|.+.+|++..+=.  .++.++++|++|.+.
T Consensus       114 L~~L~Ls-~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~  167 (229)
T 3e6j_A          114 LKELFMC-CNKLTELPRG-IERLTHLTHLALDQNQLKSIPH--GAFDRLSSLTHAYLF  167 (229)
T ss_dssp             CCEEECC-SSCCCSCCTT-GGGCTTCSEEECCSSCCCCCCT--TTTTTCTTCCEEECT
T ss_pred             hCeEecc-CCcccccCcc-cccCCCCCEEECCCCcCCccCH--HHHhCCCCCCEEEee
Confidence            9999999 8899999765 5899999999999999986511  467889999998765

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.50  E-value=4.3e-05  Score=88.40  Aligned_cols=73  Identities=19%  Similarity=0.458  Sum_probs=40.1

Q ss_pred             eEeecccccccccccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhccce
Q 004969          128 EVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQN  207 (721)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (721)
                      +.|+|++|+|..+..++.+++|++|+|. .|.|+.++  -|..||+|+.|.|.+|++..+    .+|.+|++|++|.+..
T Consensus        90 ~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls-~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l----~~l~~l~~L~~L~Ls~  162 (605)
T 1m9s_A           90 GWLFLDENKIKDLSSLKDLKKLKSLSLE-HNGISDIN--GLVHLPQLESLYLGNNKITDI----TVLSRLTKLDTLSLED  162 (605)
T ss_dssp             CEEECCSSCCCCCTTSTTCTTCCEEECT-TSCCCCCG--GGGGCTTCSEEECCSSCCCCC----GGGGSCTTCSEEECCS
T ss_pred             CEEECcCCCCCCChhhccCCCCCEEEec-CCCCCCCc--cccCCCccCEEECCCCccCCc----hhhcccCCCCEEECcC
Confidence            4455555555555555555555555555 45555552  255555555555555555544    4555555555555443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.50  E-value=0.0019  Score=66.86  Aligned_cols=184  Identities=7%  Similarity=-0.025  Sum_probs=113.5

Q ss_pred             EEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCccc
Q 004969          457 RQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIR  536 (721)
Q Consensus       457 ~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~  536 (721)
                      .++...+ ++. +..|+.++.|..||.. |+....+..  ....+.++... .++. +..++  +.|..+| .++.....
T Consensus       140 ~~~~~~~-~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~--~~~~~~~~~~d-~~g~-l~v~t--~~l~~~d-~~g~~~~~  209 (330)
T 3hxj_A          140 ATPIVSE-DGT-IYVGSNDNYLYAINPD-GTEKWRFKT--NDAITSAASIG-KDGT-IYFGS--DKVYAIN-PDGTEKWN  209 (330)
T ss_dssp             SCCEECT-TSC-EEEECTTSEEEEECTT-SCEEEEEEC--SSCCCSCCEEC-TTCC-EEEES--SSEEEEC-TTSCEEEE
T ss_pred             eeeEEcC-CCE-EEEEcCCCEEEEECCC-CCEeEEEec--CCCceeeeEEc-CCCE-EEEEe--CEEEEEC-CCCcEEEE
Confidence            3444555 555 6668888999999998 877766653  23445556653 3444 44555  7888899 55433111


Q ss_pred             ccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCC
Q 004969          537 GMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQ  616 (721)
Q Consensus       537 ~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~Dg  616 (721)
                      ..         .....+.++...+++ .+.+++.++.+..+|. +++.+..+.. ....+..+.+.+++  .+..++.+|
T Consensus       210 ~~---------~~~~~~~~~~~~~~g-~l~v~t~~~gl~~~~~-~g~~~~~~~~-~~~~~~~~~~~~~g--~l~v~t~~g  275 (330)
T 3hxj_A          210 FY---------AGYWTVTRPAISEDG-TIYVTSLDGHLYAINP-DGTEKWRFKT-GKRIESSPVIGNTD--TIYFGSYDG  275 (330)
T ss_dssp             EC---------CSSCCCSCCEECTTS-CEEEEETTTEEEEECT-TSCEEEEEEC-SSCCCSCCEECTTS--CEEEECTTC
T ss_pred             Ec---------cCCcceeceEECCCC-eEEEEcCCCeEEEECC-CCCEeEEeeC-CCCccccceEcCCC--eEEEecCCC
Confidence            10         111346666775554 5666777788888884 5676666663 33444456666666  466788888


Q ss_pred             cEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004969          617 DVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG  668 (721)
Q Consensus       617 tIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g  668 (721)
                      .+..+|. +++....+..  ....+ ++..+++|...+ |+.+|.+++...+.
T Consensus       276 gl~~~d~-~g~~~~~~~~--~~~~~~~~~~d~~g~l~~-gt~~G~~~~~~~~~  324 (330)
T 3hxj_A          276 HLYAINP-DGTEKWNFET--GSWIIATPVIDENGTIYF-GTRNGKFYALFNLE  324 (330)
T ss_dssp             EEEEECT-TSCEEEEEEC--SSCCCSCCEECTTCCEEE-ECTTSCEEEEEC--
T ss_pred             CEEEECC-CCcEEEEEEc--CCccccceEEcCCCEEEE-EcCCCeEEEEeccc
Confidence            8999996 5544333333  22333 566777777554 78899999887763

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=97.49  E-value=2.9e-05  Score=81.59  Aligned_cols=99  Identities=13%  Similarity=0.177  Sum_probs=48.5

Q ss_pred             ccchHHHHHHHHHhc-ccceEeeccCCchhhHHHHHhh-cCCccceEeeccccccccc------ccccccceeeEEeccc
Q 004969           85 MLTGEFALSLMHAID-QKLRVVDLHDSSFGKDFIRNLS-QRGLMCEVLNLRSSRFRKL------NMIGEFKRIHTLNLDY  156 (721)
Q Consensus        85 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~  156 (721)
                      .+.+.....+++.++ .+|+.++|.++.+....-..++ ..--.=+.|+|++|+|...      ..++.+++|.+|+|. 
T Consensus        75 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls-  153 (310)
T 4glp_A           75 QVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIA-  153 (310)
T ss_dssp             CCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEE-
T ss_pred             cCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEee-
Confidence            344444444444433 2466666666554432222221 2222334556665555541      111245556666665 


Q ss_pred             ccccccccccccccccccchhccccccc
Q 004969          157 STSLTSFKEDCFSCMPNLICLSMCETRV  184 (721)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (721)
                      .|.|+.+...-|..||+|+.|.+.+|++
T Consensus       154 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  181 (310)
T 4glp_A          154 QAHSPAFSCEQVRAFPALTSLDLSDNPG  181 (310)
T ss_dssp             CCSSCCCCTTSCCCCTTCCEEECCSCTT
T ss_pred             CCCcchhhHHHhccCCCCCEEECCCCCC
Confidence            5555555555555666666666666554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.48  E-value=2e-05  Score=84.84  Aligned_cols=105  Identities=16%  Similarity=0.181  Sum_probs=77.6

Q ss_pred             ccceEeeccCCchhhHHHHHhhc-CCccceEeecccccccccc--cccccceeeEEecccccccccccccccccccccch
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQ-RGLMCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLIC  176 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  176 (721)
                      ..++.++|+++.+..-.- +.+. .=-.=+.|+|++|+|..+.  .++.+++|++|+|+ .|.|+.+..+.|..|++|+.
T Consensus        39 ~~l~~L~Ls~N~l~~l~~-~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~  116 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRA-EWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS-SNHLHTLDEFLFSDLQALEV  116 (361)
T ss_dssp             TTCSEEECCSSCCCEECT-TSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC-SSCCCEECTTTTTTCTTCCE
T ss_pred             CCCCEEECCCCCCCccCh-hhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC-CCcCCcCCHHHhCCCcCCCE
Confidence            457788888876543111 1111 1223477999999998886  47788999999999 77899999999999999999


Q ss_pred             hccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969          177 LSMCETRVGNLWTTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (721)
                      |.|.+|+|..+  .-.++.+|++|++|.++.+
T Consensus       117 L~L~~N~i~~~--~~~~~~~l~~L~~L~L~~N  146 (361)
T 2xot_A          117 LLLYNNHIVVV--DRNAFEDMAQLQKLYLSQN  146 (361)
T ss_dssp             EECCSSCCCEE--CTTTTTTCTTCCEEECCSS
T ss_pred             EECCCCcccEE--CHHHhCCcccCCEEECCCC
Confidence            99999998765  2246778888888876654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=97.48  E-value=2.6e-05  Score=82.21  Aligned_cols=102  Identities=18%  Similarity=0.224  Sum_probs=54.8

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhcc
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM  179 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (721)
                      .+|+.++|.++.+..-....+...--.=+.|+|++|+|..+.-...+++|++|+|+ .|.|+.+... |..+|+|+.|.+
T Consensus       144 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls-~N~l~~l~~~-~~~l~~L~~L~L  221 (317)
T 3o53_A          144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLS-SNKLAFMGPE-FQSAAGVTWISL  221 (317)
T ss_dssp             SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECC-SSCCCEECGG-GGGGTTCSEEEC
T ss_pred             CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECC-CCcCCcchhh-hcccCcccEEEC
Confidence            45666666655544322222222112335566666666665544456666666666 5566666555 556666666666


Q ss_pred             ccccchhhhHHHHHhhcCCcchhhccc
Q 004969          180 CETRVGNLWTTIAALSKLPSLAELRFQ  206 (721)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (721)
                      .+|++..+   -.++..+++|++|.+.
T Consensus       222 ~~N~l~~l---~~~~~~l~~L~~L~l~  245 (317)
T 3o53_A          222 RNNKLVLI---EKALRFSQNLEHFDLR  245 (317)
T ss_dssp             TTSCCCEE---CTTCCCCTTCCEEECT
T ss_pred             cCCcccch---hhHhhcCCCCCEEEcc
Confidence            66666543   1234555666666544

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.47  E-value=0.014  Score=60.46  Aligned_cols=196  Identities=14%  Similarity=0.132  Sum_probs=113.9

Q ss_pred             CeEEEEEeCCCCCEEEEEECC--CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLD--GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP  532 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~D--G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~  532 (721)
                      .+..+++.| +++++++....  ..|..++..+++....... ........++.. .++..+++-..+|.|.++|..++.
T Consensus        73 ~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~-~~~~~~~g~~~~-~~~~~~v~d~~~g~i~~~d~~~~~  149 (306)
T 2p4o_A           73 KVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVETLLTL-PDAIFLNGITPL-SDTQYLTADSYRGAIWLIDVVQPS  149 (306)
T ss_dssp             EEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEEEEEC-TTCSCEEEEEES-SSSEEEEEETTTTEEEEEETTTTE
T ss_pred             CceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeEEEEEeC-CCccccCccccc-CCCcEEEEECCCCeEEEEeCCCCc
Confidence            488999999 78877665443  2477778788876543332 222334455543 344445554468888888876532


Q ss_pred             CcccccccCcce-eEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCC-CcE--EEEEccccCCCeEEEEEcCCCCc
Q 004969          533 PSIRGMHYGAGT-VTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINS-GRR--LQVFADMHKEHINVVKFSNHSPS  607 (721)
Q Consensus       533 ~~~~~~~~~~~~-~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s-~~~--v~~l~~~h~~~V~sI~fsPdg~~  607 (721)
                      ..+......... ...........+  +++++.++++. ..+.|..||+.. ++.  ...+.  .......+++.++| +
T Consensus       150 ~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~--~~~~P~gi~vd~dG-~  224 (306)
T 2p4o_A          150 GSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV--EQTNIDDFAFDVEG-N  224 (306)
T ss_dssp             EEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE--ESCCCSSEEEBTTC-C
T ss_pred             EeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe--ccCCCCCeEECCCC-C
Confidence            111000000000 000011123455  67887777766 468899999874 331  12222  11345678999999 7


Q ss_pred             EEEEEECCCcEEEEECCCCCceeEEEecCC-CCeEEEEEe---cCCCEEEEEeCCC
Q 004969          608 IFATSSFDQDVKLWDLRQKPIQPCYTASSS-KGNVMVCFS---PDDHYLLGKGSGT  659 (721)
Q Consensus       608 lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~-~~~vsl~fS---pdg~~Lasgs~Dg  659 (721)
                      ++++....+.|.+||.. ++...+...... ..+.+++|.   |++..|++++..+
T Consensus       225 l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          225 LYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             EEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             EEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence            87777778899999976 433223233322 456689998   8988887776543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.46  E-value=0.005  Score=72.79  Aligned_cols=194  Identities=9%  Similarity=0.081  Sum_probs=111.8

Q ss_pred             CeEEEEEe-CCCCCEEEEEEC-CC----eEEEEECCCC-eEEE-EeecCCCCCCeEEEEEeeCCCCEEEEEeCC-----C
Q 004969          455 RPRQFEYH-PSISCLMVFGTL-DG----EIVVVNHENE-NIVS-YIPSFGAMNSVLGLCWLKKYPSKLIAGSDN-----G  521 (721)
Q Consensus       455 ~V~~lafs-P~dg~~LasGs~-DG----~I~IWdl~tg-~~i~-~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D-----G  521 (721)
                      .+...+|| | ||++||.+.. +|    +|+++|+.+| +.+. .+.     ....++.|+ ++++.|+....|     .
T Consensus       175 ~~~~~~~S~P-DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~-----~~~~~~~Ws-pDg~~l~y~~~d~~~~~~  247 (751)
T 2xe4_A          175 DVMEVKPAPP-EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS-----GTNGEIVWG-PDHTSLFYVTKDETLREN  247 (751)
T ss_dssp             EEEEEEECTT-TTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE-----EECSCCEEC-SSTTEEEEEEECTTCCEE
T ss_pred             EEeeeEecCC-CCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc-----CceeeEEEe-cCCCEEEEEEECCCCCCC
Confidence            47789999 9 8988886543 23    5999999988 6321 111     113467898 677767666654     3


Q ss_pred             eEEEEEcCCCCCcccccccCcceeEec--cCCCeEEEEEecCCCEEEEEeC---CCcEEEEECCCCc-EE--EEEccccC
Q 004969          522 SLKLYDIRHMPPSIRGMHYGAGTVTFD--EFDQLTSVHVNSMDELFLASGY---SKNIALYDINSGR-RL--QVFADMHK  593 (721)
Q Consensus       522 tVrIWDi~~~~~~~~~~~~~~~~~~~~--~~~~V~sv~~sp~~~~lls~g~---Dg~IrlWDl~s~~-~v--~~l~~~h~  593 (721)
                      .|.++++.++...        ....+.  ......++.|+|++..++..+.   ...|+++|+.++. ..  ..+.....
T Consensus       248 ~v~~~~lgt~~~~--------~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~  319 (751)
T 2xe4_A          248 KVWRHVMGKLQSE--------DVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREK  319 (751)
T ss_dssp             EEEEEETTSCGGG--------CEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCT
T ss_pred             EEEEEECCCCchh--------cEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCC
Confidence            6777888764321        111121  1223567899999998887663   3468899998762 22  44443244


Q ss_pred             CCeEEEEEcCCCCcEEEEEECC----CcEEEEECCC-CCcee-EEEecCCCCeEEEEEecCCCEE-EEEeCCCc--EEEE
Q 004969          594 EHINVVKFSNHSPSIFATSSFD----QDVKLWDLRQ-KPIQP-CYTASSSKGNVMVCFSPDDHYL-LGKGSGTS--MFVQ  664 (721)
Q Consensus       594 ~~V~sI~fsPdg~~lLaSgs~D----gtIrIWDlrs-~~~~~-~~~~~~~~~~vsl~fSpdg~~L-asgs~Dg~--I~VW  664 (721)
                      ....++.|+..+ .+++....+    ..|..+|+.+ +.... +.  .......--.+++.+.+| ++...++.  ++++
T Consensus       320 ~~~~s~~~~~g~-~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li--~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~  396 (751)
T 2xe4_A          320 GVRYDVQMHGTS-HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLV--DHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTM  396 (751)
T ss_dssp             TCCEEEEEETTT-EEEEEECTTTCTTCEEEEEETTSTTCCCCEEE--CCCSSEEEEEEEECSSEEEEEEEETTEEEEEEE
T ss_pred             CceEEEeeeeCC-EEEEEeCCCCCCCcEEEEEcCCCcccceeeEE--CCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEE
Confidence            566667665444 556665554    3566677764 22222 22  222222212344445555 45556664  5566


Q ss_pred             Ec
Q 004969          665 SL  666 (721)
Q Consensus       665 Dl  666 (721)
                      ++
T Consensus       397 dl  398 (751)
T 2xe4_A          397 MA  398 (751)
T ss_dssp             EC
T ss_pred             ec
Confidence            65

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=97.45  E-value=6.1e-05  Score=79.19  Aligned_cols=100  Identities=18%  Similarity=0.252  Sum_probs=75.6

Q ss_pred             cccceEeeccCCchhh--HHHHHhhcCCccceEeecccccccccc---cccccceeeEEecccccccccccccccccccc
Q 004969           99 DQKLRVVDLHDSSFGK--DFIRNLSQRGLMCEVLNLRSSRFRKLN---MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPN  173 (721)
Q Consensus        99 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  173 (721)
                      -.+|+.++|+++.+..  .....++..--.=+.|+|++|+|....   .+..+.+|++|+|+ .|.|+.++...|   |+
T Consensus       200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls-~N~l~~ip~~~~---~~  275 (312)
T 1wwl_A          200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS-FTGLKQVPKGLP---AK  275 (312)
T ss_dssp             CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECT-TSCCSSCCSSCC---SE
T ss_pred             CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECC-CCccChhhhhcc---CC
Confidence            3678888888887762  445555554445677999999888844   44456789999999 788888887666   89


Q ss_pred             cchhccccccchhhhHHHHHhhcCCcchhhccc
Q 004969          174 LICLSMCETRVGNLWTTIAALSKLPSLAELRFQ  206 (721)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (721)
                      |+.|.+.+|++..+    ..+.++++|++|++.
T Consensus       276 L~~L~Ls~N~l~~~----p~~~~l~~L~~L~L~  304 (312)
T 1wwl_A          276 LSVLDLSYNRLDRN----PSPDELPQVGNLSLK  304 (312)
T ss_dssp             EEEEECCSSCCCSC----CCTTTSCEEEEEECT
T ss_pred             ceEEECCCCCCCCC----hhHhhCCCCCEEecc
Confidence            99999999998876    347888888888764

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.45  E-value=0.022  Score=58.29  Aligned_cols=183  Identities=10%  Similarity=0.090  Sum_probs=107.5

Q ss_pred             CCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEE
Q 004969          496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIA  575 (721)
Q Consensus       496 ~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~Ir  575 (721)
                      +-.+.+.+++|.|..+.++++...++.|...|.. ++. ..       ...+........+++.+++.++++.-.++.+.
T Consensus        24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v-~~-------~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~   94 (255)
T 3qqz_A           24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDL-IR-------TIPLDFVKDLETIEYIGDNQFVISDERDYAIY   94 (255)
T ss_dssp             TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCE-EE-------EEECSSCSSEEEEEECSTTEEEEEETTTTEEE
T ss_pred             CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCE-EE-------EEecCCCCChHHeEEeCCCEEEEEECCCCcEE
Confidence            5556799999995444455567778889888987 332 11       12222334567888876665444444577899


Q ss_pred             EEECCCCcE---EEEEc-----cccCCCeEEEEEcCCCCcEEEEEECCC-cEEEEECC-CCCceeEEEe-----cCCC-C
Q 004969          576 LYDINSGRR---LQVFA-----DMHKEHINVVKFSNHSPSIFATSSFDQ-DVKLWDLR-QKPIQPCYTA-----SSSK-G  639 (721)
Q Consensus       576 lWDl~s~~~---v~~l~-----~~h~~~V~sI~fsPdg~~lLaSgs~Dg-tIrIWDlr-s~~~~~~~~~-----~~~~-~  639 (721)
                      ++++.....   +....     .........++|+|.+.+++++.-.+. .|..|+-. ......+...     .... .
T Consensus        95 ~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d  174 (255)
T 3qqz_A           95 VISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDD  174 (255)
T ss_dssp             EEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSC
T ss_pred             EEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCC
Confidence            998875442   22221     113445689999999854555444444 44455410 1111112110     0111 2


Q ss_pred             eEEEEEecCC-CEEEEEeCCCcEEEEEcCCCcccccc------------cCeEEEEECCCC
Q 004969          640 NVMVCFSPDD-HYLLGKGSGTSMFVQSLRGDPFRDFN------------MSILAAYTRPSS  687 (721)
Q Consensus       640 ~vsl~fSpdg-~~Lasgs~Dg~I~VWDl~g~~l~~~~------------~~V~~v~fsP~~  687 (721)
                      .-.++++|.. ++++.+.....+.++|..|+....+.            .....++|.|++
T Consensus       175 ~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G  235 (255)
T 3qqz_A          175 VSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASG  235 (255)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTC
T ss_pred             ceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCC
Confidence            2379999954 45555566677888998877533221            156789999999

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.41  E-value=3.2e-05  Score=85.45  Aligned_cols=53  Identities=21%  Similarity=0.325  Sum_probs=27.2

Q ss_pred             eEeeccccccccccc--ccccceeeEEecccccccccccccccccccccchhcccc
Q 004969          128 EVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCE  181 (721)
Q Consensus       128 ~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (721)
                      +.|+|++|+|..+..  ++.+.+|++|+|. .|.|+.+....|..+|+|+.|.+.+
T Consensus       115 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~N~i~~~~~~~~~~l~~L~~L~l~~  169 (440)
T 3zyj_A          115 NTLELFDNRLTTIPNGAFVYLSKLKELWLR-NNPIESIPSYAFNRIPSLRRLDLGE  169 (440)
T ss_dssp             CEEECCSSCCSSCCTTTSCSCSSCCEEECC-SCCCCEECTTTTTTCTTCCEEECCC
T ss_pred             CEEECCCCcCCeeCHhHhhccccCceeeCC-CCcccccCHHHhhhCcccCEeCCCC
Confidence            445555555555432  4445555555555 4445555555555555555555544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.40  E-value=0.00016  Score=79.72  Aligned_cols=133  Identities=17%  Similarity=0.180  Sum_probs=85.7

Q ss_pred             cceeeEeecCCccccchHHHHHHHHHh--cccceEeeccCCchhhHHHHHhhcCCc----cceEeecccccccc------
Q 004969           72 EIEAVDVRSGTSCMLTGEFALSLMHAI--DQKLRVVDLHDSSFGKDFIRNLSQRGL----MCEVLNLRSSRFRK------  139 (721)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~------  139 (721)
                      .+..+|+.   .|.+....+-.+-.++  +.+|+.+||+++.++...+..++..=-    .=+.|+|++|+|..      
T Consensus        29 ~L~~L~L~---~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l  105 (461)
T 1z7x_W           29 QCQVVRLD---DCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL  105 (461)
T ss_dssp             TCSEEEEE---SSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CccEEEcc---CCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence            45566664   3446655443333333  467888888888887766666554322    35678888888775      


Q ss_pred             cccccccceeeEEeccccccccc-----ccccccccccccchhccccccchhhh--HHHHHhhcCCcchhhcccee
Q 004969          140 LNMIGEFKRIHTLNLDYSTSLTS-----FKEDCFSCMPNLICLSMCETRVGNLW--TTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       140 ~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  208 (721)
                      ...++.+++|++|+|. .+.|+.     +.+.++.+.++|+.|.+.+|++....  .-..++.++++|++|.+..|
T Consensus       106 ~~~l~~~~~L~~L~Ls-~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n  180 (461)
T 1z7x_W          106 SSTLRTLPTLQELHLS-DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN  180 (461)
T ss_dssp             HHHTTSCTTCCEEECC-SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred             HHHHccCCceeEEECC-CCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCC
Confidence            3455677888888888 555653     44455666778888888888777532  12355677788888876654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.39  E-value=0.028  Score=60.74  Aligned_cols=189  Identities=7%  Similarity=0.027  Sum_probs=120.4

Q ss_pred             CEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeE
Q 004969          467 CLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVT  546 (721)
Q Consensus       467 ~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~  546 (721)
                      .+|+.+ ....|+.+++..+.....+.   ....+.+++|.+.++.++++-...+.|..+++.+....         .+.
T Consensus        88 ~~l~~~-~~~~I~~i~~~~~~~~~~~~---~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~---------~~~  154 (386)
T 3v65_B           88 PVLLFA-NRIDIRQVLPHRSEYTLLLN---NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE---------EVV  154 (386)
T ss_dssp             CEEEEE-CBSCEEEECTTSCCCEEEEC---SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEE---------EEE
T ss_pred             ceeEee-cCccceeeccCCCcEEEEec---CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcE---------EEE
Confidence            344443 34568889988665544443   23568899998555556666667789999998874321         111


Q ss_pred             eccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECC-CcEEEEECC
Q 004969          547 FDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD-QDVKLWDLR  624 (721)
Q Consensus       547 ~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~D-gtIrIWDlr  624 (721)
                      .........+++.+.++.++.+. ..+.|.+.++........+.. .......+++.|.++.++++-... +.|..+++.
T Consensus       155 ~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~-~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d  233 (386)
T 3v65_B          155 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQ-SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD  233 (386)
T ss_dssp             CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECS-SCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecC-CCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC
Confidence            11112346778877777776665 467899988875443333332 445678999999775666666555 789999987


Q ss_pred             CCCceeEEEecCCCCeEEEEEecCCCEEEEEe-CCCcEEEEEcCCCc
Q 004969          625 QKPIQPCYTASSSKGNVMVCFSPDDHYLLGKG-SGTSMFVQSLRGDP  670 (721)
Q Consensus       625 s~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs-~Dg~I~VWDl~g~~  670 (721)
                      ..... .....+-..+..++|+|++..|+.+. ..+.|..+++.|..
T Consensus       234 G~~~~-~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~  279 (386)
T 3v65_B          234 GSGRR-IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH  279 (386)
T ss_dssp             SCSCE-EEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCS
T ss_pred             CCCcE-EEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCe
Confidence            64322 22222333456899998777766654 45678999987643

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=97.38  E-value=4.3e-05  Score=78.97  Aligned_cols=76  Identities=22%  Similarity=0.322  Sum_probs=35.4

Q ss_pred             eEeeccccccccccc--ccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhcc
Q 004969          128 EVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRF  205 (721)
Q Consensus       128 ~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (721)
                      +.|+|++|++..+..  ++.+++|++|+|. .|.|+.+....|..||+|+.|.|.+|++..+-  ..++.++++|++|.+
T Consensus       108 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l  184 (285)
T 1ozn_A          108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQ-DNALQALPDDTFRDLGNLTHLFLHGNRISSVP--ERAFRGLHSLDRLLL  184 (285)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEEC
T ss_pred             CEEECCCCcCCEECHhHhhCCcCCCEEECC-CCcccccCHhHhccCCCccEEECCCCcccccC--HHHhcCccccCEEEC
Confidence            345555555544422  3444555555555 44455555555555555555555555444320  012444455555544


Q ss_pred             c
Q 004969          206 Q  206 (721)
Q Consensus       206 ~  206 (721)
                      .
T Consensus       185 ~  185 (285)
T 1ozn_A          185 H  185 (285)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.37  E-value=8.8e-05  Score=80.51  Aligned_cols=133  Identities=18%  Similarity=0.155  Sum_probs=96.5

Q ss_pred             cceeeEeecCCccccchHHHHHHHHHh---cccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccc-----
Q 004969           72 EIEAVDVRSGTSCMLTGEFALSLMHAI---DQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMI-----  143 (721)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  143 (721)
                      .+..+|+   +.|.+....+-.+...+   +..|+.++|.++.++..-++.++..=-.++.|||++|+|...+..     
T Consensus        73 ~L~~L~L---s~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~  149 (372)
T 3un9_A           73 SLRQLNL---AGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL  149 (372)
T ss_dssp             TCCEEEC---TTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred             hCCEEEe---cCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence            4566666   44566666655555553   378999999999998887777765434689999999988654322     


Q ss_pred             --cccceeeEEeccccccccccccccc----ccccccchhccccccchhhh--HHHHHhhcCCcchhhcccee
Q 004969          144 --GEFKRIHTLNLDYSTSLTSFKEDCF----SCMPNLICLSMCETRVGNLW--TTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       144 --~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  208 (721)
                        ....+|.+|+|. .|.|+......+    ..+|+|+.|.|.+|+|.+.=  .-..+|.++++|++|.++.|
T Consensus       150 L~~~~~~L~~L~Ls-~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N  221 (372)
T 3un9_A          150 LLHDQCQITTLRLS-NNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN  221 (372)
T ss_dssp             HHSTTCCCCEEECC-SSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred             HHhcCCccceeeCC-CCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence              134779999999 667887544333    67899999999999998631  22467888999999987765

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=97.37  E-value=3.1e-05  Score=81.34  Aligned_cols=144  Identities=15%  Similarity=0.158  Sum_probs=98.2

Q ss_pred             HHHHHhhcCCCcceeeEeecCCccccchHHHHHHHHHhcccceEeeccCCchhhHH--HHHhhcCCc-cceEeecccccc
Q 004969           61 LLEVCMQIGATEIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKDF--IRNLSQRGL-MCEVLNLRSSRF  137 (721)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~  137 (721)
                      +.+++..+..+.++.+|+.+-   .+.+.....++.+-..+|+.++|+++.+...+  +..+...++ .=+.|+|++|+|
T Consensus        81 ~~~~~~~~~~~~L~~L~l~~n---~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l  157 (310)
T 4glp_A           81 LVGALRVLAYSRLKELTLEDL---KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHS  157 (310)
T ss_dssp             HHHHHHHHHHSCCCEEEEESC---CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSS
T ss_pred             HHHHHHhcccCceeEEEeeCC---EeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCc
Confidence            445555555566888998432   22221111111134678999999999887521  222222233 557899999999


Q ss_pred             cccc--cccccceeeEEeccccccccc---c-cccccccccccchhccccccchhhhHHHHH-hhcCCcchhhcccee
Q 004969          138 RKLN--MIGEFKRIHTLNLDYSTSLTS---F-KEDCFSCMPNLICLSMCETRVGNLWTTIAA-LSKLPSLAELRFQNW  208 (721)
Q Consensus       138 ~~~~--~~~~~~~~~~l~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  208 (721)
                      ..+.  .++.+++|++|+|. .|.++.   + ...|+..+|+|+.|.|.+|++..+=....+ +..+++|++|.+..+
T Consensus       158 ~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N  234 (310)
T 4glp_A          158 PAFSCEQVRAFPALTSLDLS-DNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHN  234 (310)
T ss_dssp             CCCCTTSCCCCTTCCEEECC-SCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS
T ss_pred             chhhHHHhccCCCCCEEECC-CCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCC
Confidence            8774  56789999999999 566553   3 247889999999999999999765333344 478899999987654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.35  E-value=0.00032  Score=75.28  Aligned_cols=84  Identities=18%  Similarity=0.210  Sum_probs=35.8

Q ss_pred             cceEeeccCCchhhHHHHHhhc---C-CccceEeeccccccccccc------cccc-ceeeEEecccccccccccccccc
Q 004969          101 KLRVVDLHDSSFGKDFIRNLSQ---R-GLMCEVLNLRSSRFRKLNM------IGEF-KRIHTLNLDYSTSLTSFKEDCFS  169 (721)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~l~~~~~~~~~~~~~~~~~  169 (721)
                      +|+.++|.++.++......+++   . .-.=+.|+|++|++.....      +..+ .+|++|+|. .|.|+......|.
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls-~N~l~~~~~~~l~  130 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLG-WNDFSSKSSSEFK  130 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECC-SSCGGGSCHHHHH
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECc-CCcCCcHHHHHHH
Confidence            4555555555554433332222   1 1222345555555543331      1222 455555555 4445544433322


Q ss_pred             cc-----cccchhccccccch
Q 004969          170 CM-----PNLICLSMCETRVG  185 (721)
Q Consensus       170 ~~-----~~~~~~~~~~~~~~  185 (721)
                      .+     ++|+.|.|.+|++.
T Consensus       131 ~~l~~~~~~L~~L~Ls~N~l~  151 (362)
T 3goz_A          131 QAFSNLPASITSLNLRGNDLG  151 (362)
T ss_dssp             HHHTTSCTTCCEEECTTSCGG
T ss_pred             HHHHhCCCceeEEEccCCcCC
Confidence            21     25555555555554

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.34  E-value=0.0091  Score=68.76  Aligned_cols=193  Identities=14%  Similarity=0.063  Sum_probs=113.8

Q ss_pred             EEEeCCCCCEEEEEECC----------------CeEEEEECCCCeEEEEeecCCCCC--------CeEEEEEeeCCC---
Q 004969          459 FEYHPSISCLMVFGTLD----------------GEIVVVNHENENIVSYIPSFGAMN--------SVLGLCWLKKYP---  511 (721)
Q Consensus       459 lafsP~dg~~LasGs~D----------------G~I~IWdl~tg~~i~~l~~~~H~~--------~V~sl~fsp~d~---  511 (721)
                      .++.+ ...++..++.+                +.|.-+|..+|+.+..++...|..        ++. +.....++   
T Consensus       246 ~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~  323 (599)
T 1w6s_A          246 YAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKAR  323 (599)
T ss_dssp             CEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEE
T ss_pred             eeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEE
Confidence            45667 55677777655                489999999999998888654422        222 22211345   


Q ss_pred             CEEEEEeCCCeEEEEEcCCCCCcccccccC-----------cc-ee---------------Eec---cCCCeEEEEEecC
Q 004969          512 SKLIAGSDNGSLKLYDIRHMPPSIRGMHYG-----------AG-TV---------------TFD---EFDQLTSVHVNSM  561 (721)
Q Consensus       512 ~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~-----------~~-~~---------------~~~---~~~~V~sv~~sp~  561 (721)
                      ..++.++.+|.+.++|..+++.........           .+ .+               .+.   ....-..++++|+
T Consensus       324 ~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~  403 (599)
T 1w6s_A          324 KLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPK  403 (599)
T ss_dssp             EEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred             EEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCC
Confidence            467778999999999999987643221110           00 00               000   0000123455555


Q ss_pred             CCEEEEE---------------------------------e------CCCcEEEEECCCCcEEEEEccccCCCeEEEEEc
Q 004969          562 DELFLAS---------------------------------G------YSKNIALYDINSGRRLQVFADMHKEHINVVKFS  602 (721)
Q Consensus       562 ~~~lls~---------------------------------g------~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fs  602 (721)
                      .+.+++.                                 +      ..|.+.-||+.+++.+.....  ..+...-...
T Consensus       404 ~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~--~~~~~~g~~~  481 (599)
T 1w6s_A          404 RELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME--RFAVWGGTMA  481 (599)
T ss_dssp             TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE--SSCCCSBCEE
T ss_pred             CCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecC--CCCccCcceE
Confidence            5444432                                 1      347899999999999988762  2222211122


Q ss_pred             CCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCC-EEEEEe
Q 004969          603 NHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDH-YLLGKG  656 (721)
Q Consensus       603 Pdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~-~Lasgs  656 (721)
                      ..+ .+++.++.|+.++.||.++++..-.+.+.......-+.|..+|+ |+++.+
T Consensus       482 tag-g~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~~  535 (599)
T 1w6s_A          482 TAG-DLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYY  535 (599)
T ss_dssp             ETT-TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             ecC-CEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEEc
Confidence            234 47777999999999999999765444443222111366777886 444433

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.34  E-value=0.00017  Score=75.94  Aligned_cols=109  Identities=19%  Similarity=0.234  Sum_probs=52.3

Q ss_pred             cccceEeeccCC-chhhHHHHHhhcCCccceEeecccc-cccc---cccccccc-eeeEEeccccc-cccc-cccccccc
Q 004969           99 DQKLRVVDLHDS-SFGKDFIRNLSQRGLMCEVLNLRSS-RFRK---LNMIGEFK-RIHTLNLDYST-SLTS-FKEDCFSC  170 (721)
Q Consensus        99 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~-~~~~l~~~~~~-~~~~-~~~~~~~~  170 (721)
                      ..+|+.++|..+ .++...+..+...=-.=+.|+|+.| .+..   ...++.++ +|++|+|.+|. .++. --...+..
T Consensus       141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~  220 (336)
T 2ast_B          141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR  220 (336)
T ss_dssp             CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH
T ss_pred             CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh
Confidence            356666666665 3443333333222223345666655 5543   22344555 66666666433 3331 11124445


Q ss_pred             ccccchhcccccc-chhhhHHHHHhhcCCcchhhccceee
Q 004969          171 MPNLICLSMCETR-VGNLWTTIAALSKLPSLAELRFQNWL  209 (721)
Q Consensus       171 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (721)
                      +|+|+.|.+.+|. +.+  ....++.++++|++|.+..|-
T Consensus       221 ~~~L~~L~l~~~~~l~~--~~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          221 CPNLVHLDLSDSVMLKN--DCFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             CTTCSEEECTTCTTCCG--GGGGGGGGCTTCCEEECTTCT
T ss_pred             CCCCCEEeCCCCCcCCH--HHHHHHhCCCCCCEeeCCCCC
Confidence            5666666666655 332  122355555666666555553

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.34  E-value=3.9e-05  Score=84.75  Aligned_cols=80  Identities=20%  Similarity=0.310  Sum_probs=69.0

Q ss_pred             cceEeecccccccccccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhcc
Q 004969          126 MCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRF  205 (721)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (721)
                      +=+.|+|++|++..+..++.+.+|++|+|+ .|.|+.+..+.|..|++|+.|.|.+|++..+-  ..++.+|++|++|.+
T Consensus       186 ~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L  262 (440)
T 3zyj_A          186 NLRYLNLAMCNLREIPNLTPLIKLDELDLS-GNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE--RNAFDNLQSLVEINL  262 (440)
T ss_dssp             SCCEEECTTSCCSSCCCCTTCSSCCEEECT-TSCCCEECTTTTTTCTTCCEEECTTCCCCEEC--TTSSTTCTTCCEEEC
T ss_pred             ccCeecCCCCcCccccccCCCcccCEEECC-CCccCccChhhhccCccCCEEECCCCceeEEC--hhhhcCCCCCCEEEC
Confidence            346799999999999888999999999999 77999999999999999999999999998662  356888999999977


Q ss_pred             cee
Q 004969          206 QNW  208 (721)
Q Consensus       206 ~~~  208 (721)
                      ..+
T Consensus       263 ~~N  265 (440)
T 3zyj_A          263 AHN  265 (440)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.33  E-value=2.4e-05  Score=78.75  Aligned_cols=104  Identities=13%  Similarity=0.145  Sum_probs=74.7

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeeccccc-ccccc--cccccceeeEEecccccccccccccccccccccch
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSR-FRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLIC  176 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  176 (721)
                      .+|+.++|+++.+..-. ...+..=-.=+.|+|+.|+ +..+.  .++.+++|++|+|.++|.|+.+..+.|..||+|+.
T Consensus        31 ~~l~~L~l~~n~l~~i~-~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIP-SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             TTCCEEEEESCCCSEEC-TTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CcccEEEEeCCcceEEC-HHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            36777777776543210 0011111235779999997 88776  56788999999999669999999999999999999


Q ss_pred             hccccccchhhhHHHHHhhcCCcch---hhcccee
Q 004969          177 LSMCETRVGNLWTTIAALSKLPSLA---ELRFQNW  208 (721)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  208 (721)
                      |.|.+|++..+    .++.++++|+   +|.++.+
T Consensus       110 L~l~~n~l~~l----p~~~~l~~L~~L~~L~l~~N  140 (239)
T 2xwt_C          110 LGIFNTGLKMF----PDLTKVYSTDIFFILEITDN  140 (239)
T ss_dssp             EEEEEECCCSC----CCCTTCCBCCSEEEEEEESC
T ss_pred             EeCCCCCCccc----cccccccccccccEEECCCC
Confidence            99999988764    4466777776   7776654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.32  E-value=6.4e-05  Score=72.01  Aligned_cols=80  Identities=21%  Similarity=0.358  Sum_probs=66.9

Q ss_pred             cceEeeccccccccccc--ccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhh
Q 004969          126 MCEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAEL  203 (721)
Q Consensus       126 ~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (721)
                      .-+.|+|++|+|..+..  ++.+.+|++|+|. .|.|+.+....|..+++|+.|.|.+|++..+=  -.++.++++|++|
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~--~~~~~~l~~L~~L  105 (177)
T 2o6r_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLS-QNQIQSLPDGVFDKLTKLTILYLHENKLQSLP--NGVFDKLTQLKEL  105 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEE
T ss_pred             CCcEEEeCCCcccEeCHHHhcCcccccEEECC-CCcceEeChhHccCCCccCEEECCCCCccccC--HHHhhCCcccCEE
Confidence            44789999999998764  6788999999999 78999999999999999999999999988551  1246788999999


Q ss_pred             cccee
Q 004969          204 RFQNW  208 (721)
Q Consensus       204 ~~~~~  208 (721)
                      ++..+
T Consensus       106 ~l~~N  110 (177)
T 2o6r_A          106 ALDTN  110 (177)
T ss_dssp             ECCSS
T ss_pred             ECcCC
Confidence            77654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=97.32  E-value=3.7e-05  Score=80.25  Aligned_cols=105  Identities=19%  Similarity=0.232  Sum_probs=77.3

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccc---cccccccceeeEEecccccccccccccccccccccch
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRK---LNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLIC  176 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  176 (721)
                      .+|+.++|.++.+....-.. +..=-+=+.|+|++|++..   -..++.+++|++|+|. .+.|+.+....|..+|+|+.
T Consensus       126 ~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~  203 (306)
T 2z66_A          126 RNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS-QCQLEQLSPTAFNSLSSLQV  203 (306)
T ss_dssp             TTCCEEECTTSCCEECSTTT-TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT-TSCCCEECTTTTTTCTTCCE
T ss_pred             cCCCEEECCCCcCCccchhh-cccCcCCCEEECCCCccccccchhHHhhCcCCCEEECC-CCCcCCcCHHHhcCCCCCCE
Confidence            57889999887665322111 1111234678999888875   4567788899999999 77888888888999999999


Q ss_pred             hccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969          177 LSMCETRVGNLWTTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (721)
                      |.|.+|++..+=  ..++.++++|++|.+..+
T Consensus       204 L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N  233 (306)
T 2z66_A          204 LNMSHNNFFSLD--TFPYKCLNSLQVLDYSLN  233 (306)
T ss_dssp             EECTTSCCSBCC--SGGGTTCTTCCEEECTTS
T ss_pred             EECCCCccCccC--hhhccCcccCCEeECCCC
Confidence            999999887651  124778888999888776

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.32  E-value=0.0057  Score=70.03  Aligned_cols=203  Identities=8%  Similarity=-0.044  Sum_probs=116.5

Q ss_pred             CEEEEEEC------CCeEEEEECCCCeEEEEeecCCCC-----------------------------------CCe-EEE
Q 004969          467 CLMVFGTL------DGEIVVVNHENENIVSYIPSFGAM-----------------------------------NSV-LGL  504 (721)
Q Consensus       467 ~~LasGs~------DG~I~IWdl~tg~~i~~l~~~~H~-----------------------------------~~V-~sl  504 (721)
                      ..+++++.      +|.|..+|..+|+.+..+......                                   ..+ ..+
T Consensus       161 g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~  240 (571)
T 2ad6_A          161 DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWY  240 (571)
T ss_dssp             TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCC
T ss_pred             CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeE
Confidence            45566654      799999999999998877642211                                   000 123


Q ss_pred             EEeeCCCCEEEEEeCC----------------CeEEEEEcCCCCCcccccccCcceeEec-cCCCeEEEEEecCCC---E
Q 004969          505 CWLKKYPSKLIAGSDN----------------GSLKLYDIRHMPPSIRGMHYGAGTVTFD-EFDQLTSVHVNSMDE---L  564 (721)
Q Consensus       505 ~fsp~d~~~LaSgs~D----------------GtVrIWDi~~~~~~~~~~~~~~~~~~~~-~~~~V~sv~~sp~~~---~  564 (721)
                      ++. +....++.++.+                +.|..+|..+++........+.....+. ...++. +....++.   .
T Consensus       241 a~d-~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~  318 (571)
T 2ad6_A          241 AYD-PKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPL  318 (571)
T ss_dssp             EEE-TTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEE
T ss_pred             EEc-CCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEE
Confidence            444 334555555432                3688899988775322111100000000 011221 22223553   4


Q ss_pred             EEEEeCCCcEEEEECCCCcEEEEEcccc-C-----------CCe--------------------------EEEEEcCCCC
Q 004969          565 FLASGYSKNIALYDINSGRRLQVFADMH-K-----------EHI--------------------------NVVKFSNHSP  606 (721)
Q Consensus       565 lls~g~Dg~IrlWDl~s~~~v~~l~~~h-~-----------~~V--------------------------~sI~fsPdg~  606 (721)
                      ++.++.+|.+.++|..+|+.+..+.-.. .           .++                          ..++++|++ 
T Consensus       319 v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~-  397 (571)
T 2ad6_A          319 LSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES-  397 (571)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT-
T ss_pred             EEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC-
Confidence            5667789999999999999988765311 0           111                          235788877 


Q ss_pred             cEEEEEE-------------------------------------CCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCC
Q 004969          607 SIFATSS-------------------------------------FDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDD  649 (721)
Q Consensus       607 ~lLaSgs-------------------------------------~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg  649 (721)
                      .++++..                                     .+|.|..||..+++..-.+....  ...+......+
T Consensus       398 g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~--~~~~~~~~t~g  475 (571)
T 2ad6_A          398 RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF--AAWGGTLYTKG  475 (571)
T ss_dssp             TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS--CCCSBCEEETT
T ss_pred             CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC--CccceeEEECC
Confidence            3554442                                     35789999999986543333321  22222233456


Q ss_pred             CEEEEEeCCCcEEEEEcC-CCccccc
Q 004969          650 HYLLGKGSGTSMFVQSLR-GDPFRDF  674 (721)
Q Consensus       650 ~~Lasgs~Dg~I~VWDl~-g~~l~~~  674 (721)
                      ..++.++.||.++.||.+ |+.+..+
T Consensus       476 g~v~~g~~dg~l~a~D~~tG~~lw~~  501 (571)
T 2ad6_A          476 GLVWYATLDGYLKALDNKDGKELWNF  501 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CEEEEEcCCCeEEEEECCCCCEEEEE
Confidence            777789999999999987 5554433

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.32  E-value=5.8e-05  Score=86.31  Aligned_cols=100  Identities=20%  Similarity=0.258  Sum_probs=60.6

Q ss_pred             cceEeeccCCchhh---HHHHHhhcCCccceEeecccccccccc--cccccceeeEEecccccccccccccccccccccc
Q 004969          101 KLRVVDLHDSSFGK---DFIRNLSQRGLMCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLI  175 (721)
Q Consensus       101 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  175 (721)
                      .+++.||+.+.+-.   +.+.+|.    .=++|||++|+|+.+.  .++.+.+|++|+|. .|+|+.++.+.|..+++|+
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~----~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls-~N~l~~l~~~~f~~L~~L~  127 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFP----ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT-GNPIQSLALGAFSGLSSLQ  127 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCT----TCCEEECTTCCCCEECTTTTTTCTTCCEEECT-TCCCCEECGGGGTTCTTCC
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCC----CCCEEECCCCcCCCcChhHhcCCCCCCEEEcc-CCcCCCCCHHHhcCCCCCC
Confidence            46677777654421   1111111    2356777777777664  35666777777777 5667777777777777777


Q ss_pred             hhccccccchhhhHHHHHhhcCCcchhhccce
Q 004969          176 CLSMCETRVGNLWTTIAALSKLPSLAELRFQN  207 (721)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (721)
                      .|.+.+|++..+=  -.++.+|++|++|.+..
T Consensus       128 ~L~Ls~N~l~~l~--~~~~~~L~~L~~L~Ls~  157 (635)
T 4g8a_A          128 KLVAVETNLASLE--NFPIGHLKTLKELNVAH  157 (635)
T ss_dssp             EEECTTSCCCCST--TCCCTTCTTCCEEECCS
T ss_pred             EEECCCCcCCCCC--hhhhhcCcccCeecccc
Confidence            7777777766541  12356677777776544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=97.31  E-value=7.3e-05  Score=77.22  Aligned_cols=105  Identities=18%  Similarity=0.193  Sum_probs=59.5

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeeccccccccccc--ccccceeeEEecccccccccccccccccccccchh
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL  177 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  177 (721)
                      .+|+.++|..+.+..-. .+.+..=-+=+.|+|++|++..+..  ++.+++|++|+|. .|.|+.+....|..+|+|+.|
T Consensus       105 ~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L  182 (285)
T 1ozn_A          105 GRLHTLHLDRCGLQELG-PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH-GNRISSVPERAFRGLHSLDRL  182 (285)
T ss_dssp             TTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCEECTTTTTTCTTCCEE
T ss_pred             cCCCEEECCCCcCCEEC-HhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECC-CCcccccCHHHhcCccccCEE
Confidence            46777777665543210 0111111123556677666666543  5566667777776 556666666666666777777


Q ss_pred             ccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969          178 SMCETRVGNLWTTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (721)
                      .|.+|++..+-  ..++.++++|++|.+..+
T Consensus       183 ~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n  211 (285)
T 1ozn_A          183 LLHQNRVAHVH--PHAFRDLGRLMTLYLFAN  211 (285)
T ss_dssp             ECCSSCCCEEC--TTTTTTCTTCCEEECCSS
T ss_pred             ECCCCcccccC--HhHccCcccccEeeCCCC
Confidence            77666665441  234556666666665553

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=97.31  E-value=4.1e-05  Score=81.79  Aligned_cols=106  Identities=19%  Similarity=0.230  Sum_probs=61.2

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccc--cccccceeeEEecccccccccccccccccccccchh
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL  177 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  177 (721)
                      .+|+.++|+++.+..--- +-+..=-.=+.|+|++|++..+.  .++.+.+|++|+|. .|.|+.+..+.|..+|+|+.|
T Consensus        52 ~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L  129 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISN-SDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS-YNYLSNLSSSWFKPLSSLTFL  129 (353)
T ss_dssp             TTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC-SSCCSSCCHHHHTTCTTCSEE
T ss_pred             ccCcEEECCCCcCcccCH-HHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC-CCcCCcCCHhHhCCCccCCEE
Confidence            456666666655432100 00111123456777777776663  36666777777777 566777776667777777777


Q ss_pred             ccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969          178 SMCETRVGNLWTTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (721)
                      .+.+|++..+- ...++.++++|++|++..|
T Consensus       130 ~L~~n~l~~l~-~~~~~~~l~~L~~L~l~~n  159 (353)
T 2z80_A          130 NLLGNPYKTLG-ETSLFSHLTKLQILRVGNM  159 (353)
T ss_dssp             ECTTCCCSSSC-SSCSCTTCTTCCEEEEEES
T ss_pred             ECCCCCCcccC-chhhhccCCCCcEEECCCC
Confidence            77777666431 0123566677777766654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=97.30  E-value=0.00016  Score=78.10  Aligned_cols=153  Identities=14%  Similarity=0.187  Sum_probs=73.8

Q ss_pred             eccccCCCchhHHHHHhhcCCCcceeeEeecCCccccchHHHHHHHHHh--cccceEeeccCCchhh------HHHHHhh
Q 004969           50 LEYLKDIDFQPLLEVCMQIGATEIEAVDVRSGTSCMLTGEFALSLMHAI--DQKLRVVDLHDSSFGK------DFIRNLS  121 (721)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~------~~~~~~~  121 (721)
                      ++++.+.++.++.+.+....  .+..+|+.   .|.+...-+-.+-.++  ..+|+.++|.++..++      +.++.|.
T Consensus        13 ~~~l~~~~~~~l~~~l~~~~--~L~~L~L~---~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~   87 (386)
T 2ca6_A           13 LDAITTEDEKSVFAVLLEDD--SVKEIVLS---GNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL   87 (386)
T ss_dssp             ESSCCSHHHHTTSHHHHHCS--CCCEEECT---TSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHhcCC--CccEEECC---CCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHH
Confidence            34555556666666555442  25555553   3445554443333322  4566666666643321      1222221


Q ss_pred             ---cCCccceEeeccccccccc------ccccccceeeEEecccccccccccccccccc-------------cccchhcc
Q 004969          122 ---QRGLMCEVLNLRSSRFRKL------NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCM-------------PNLICLSM  179 (721)
Q Consensus       122 ---~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~  179 (721)
                         ..--.=+.|+|+.|+|..-      ..++.+++|++|+|. .|.|+.....-|..+             |+|+.|.+
T Consensus        88 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~-~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L  166 (386)
T 2ca6_A           88 QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLH-NNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC  166 (386)
T ss_dssp             HHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECC-SSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEC
T ss_pred             HHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECc-CCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEEC
Confidence               1222335566666666551      133455666666666 455553332222222             66666666


Q ss_pred             ccccchhh-hHH-HHHhhcCCcchhhcccee
Q 004969          180 CETRVGNL-WTT-IAALSKLPSLAELRFQNW  208 (721)
Q Consensus       180 ~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~  208 (721)
                      .+|++.+- ... ..+|.++++|++|++..|
T Consensus       167 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n  197 (386)
T 2ca6_A          167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQN  197 (386)
T ss_dssp             CSSCCTGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred             CCCCCCcHHHHHHHHHHHhCCCcCEEECcCC
Confidence            66666421 111 134556666666655543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.30  E-value=0.12  Score=56.20  Aligned_cols=193  Identities=10%  Similarity=0.040  Sum_probs=120.4

Q ss_pred             CEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeE
Q 004969          467 CLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVT  546 (721)
Q Consensus       467 ~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~  546 (721)
                      .+++.+. ...|+..++........+.   ....+.+|+|.+.++.++++-...+.|..+++.+....     .....+.
T Consensus        84 ~~ll~~~-~~~I~~i~l~~~~~~~~~~---~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~-----~~~~~~~  154 (400)
T 3p5b_L           84 AYLFFTN-RHEVRKMTLDRSEYTSLIP---NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-----SSYDTVI  154 (400)
T ss_dssp             CEEEEEE-TTEEEEECTTSCSCEEEEC---SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----------CCCEEEE
T ss_pred             ceeEEec-cceeEEEccCCcceeEecc---ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCC-----CcceEEE
Confidence            3444444 4679999998765554443   34678899998545555555566788999998763210     0001111


Q ss_pred             eccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC-CCcEEEEECC
Q 004969          547 FDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF-DQDVKLWDLR  624 (721)
Q Consensus       547 ~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~-DgtIrIWDlr  624 (721)
                      .........+++.+.++.++.+. ..+.|.+.|+........+.. .......|++.|.++.++.+-.. .+.|...++.
T Consensus       155 ~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~-~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d  233 (400)
T 3p5b_L          155 SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE-NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN  233 (400)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEEC-SSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT
T ss_pred             eCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeC-CCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC
Confidence            11223467888887666666665 468899999886554444432 44568899999976456555433 4789999987


Q ss_pred             CCCceeEEEecCCCCeEEEEEecCCCEEEEEe-CCCcEEEEEcCCCc
Q 004969          625 QKPIQPCYTASSSKGNVMVCFSPDDHYLLGKG-SGTSMFVQSLRGDP  670 (721)
Q Consensus       625 s~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs-~Dg~I~VWDl~g~~  670 (721)
                      ..... ......-..+..+++++++..|+.+. ..+.|..+|+.|..
T Consensus       234 G~~~~-~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~  279 (400)
T 3p5b_L          234 GVDIY-SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  279 (400)
T ss_dssp             SCSCE-EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC
T ss_pred             CCccE-EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc
Confidence            64332 22222334556899999888777665 45689999988643

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=97.30  E-value=5e-05  Score=84.16  Aligned_cols=105  Identities=17%  Similarity=0.208  Sum_probs=59.3

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeeccccccccccc--ccccceeeEEecccccccccccccccccccccchh
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL  177 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  177 (721)
                      .+|+.++|.++.+..-.. +.+.+=-.=+.|+|++|+|..+..  ++.+++|++|+|+ .|.|+.+....|..+|+|+.|
T Consensus        99 ~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L  176 (452)
T 3zyi_A           99 HHLEVLQLGRNSIRQIEV-GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR-NNPIESIPSYAFNRVPSLMRL  176 (452)
T ss_dssp             TTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC-SCCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCEEECCCCccCCcCh-hhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC-CCCcceeCHhHHhcCCcccEE
Confidence            467777777765432110 011111234567777777766643  5566677777777 566777666666666666666


Q ss_pred             cccc-ccchhhhHHHHHhhcCCcchhhcccee
Q 004969          178 SMCE-TRVGNLWTTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       178 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (721)
                      .+.+ +.+..+  ...++.+|++|++|.+..|
T Consensus       177 ~l~~~~~l~~i--~~~~~~~l~~L~~L~L~~n  206 (452)
T 3zyi_A          177 DLGELKKLEYI--SEGAFEGLFNLKYLNLGMC  206 (452)
T ss_dssp             ECCCCTTCCEE--CTTTTTTCTTCCEEECTTS
T ss_pred             eCCCCCCcccc--ChhhccCCCCCCEEECCCC
Confidence            6666 333322  1124556666666665544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.28  E-value=1.6e-05  Score=77.91  Aligned_cols=77  Identities=19%  Similarity=0.262  Sum_probs=45.6

Q ss_pred             eEeeccccccccccc-ccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhccc
Q 004969          128 EVLNLRSSRFRKLNM-IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQ  206 (721)
Q Consensus       128 ~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (721)
                      +.|+|++|+|..+.- ++.+++|++|+|. .|.|+.++  -|..||+|+.|.|.+|++..+ ..+..+.++++|++|++.
T Consensus        73 ~~L~l~~n~l~~l~~~~~~~~~L~~L~L~-~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~-~~~~~l~~l~~L~~L~l~  148 (198)
T 1ds9_A           73 RILSLGRNLIKKIENLDAVADTLEELWIS-YNQIASLS--GIEKLVNLRVLYMSNNKITNW-GEIDKLAALDKLEDLLLA  148 (198)
T ss_dssp             CEEEEEEEEECSCSSHHHHHHHCSEEEEE-EEECCCHH--HHHHHHHSSEEEESEEECCCH-HHHHHHTTTTTCSEEEEC
T ss_pred             CEEECCCCCcccccchhhcCCcCCEEECc-CCcCCcCC--ccccCCCCCEEECCCCcCCch-hHHHHHhcCCCCCEEEec
Confidence            456666666665532 2334566666666 55666664  366666666666666666643 333456666666666655


Q ss_pred             ee
Q 004969          207 NW  208 (721)
Q Consensus       207 ~~  208 (721)
                      .|
T Consensus       149 ~N  150 (198)
T 1ds9_A          149 GN  150 (198)
T ss_dssp             SC
T ss_pred             CC
Confidence            44

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.27  E-value=0.034  Score=59.44  Aligned_cols=194  Identities=9%  Similarity=0.153  Sum_probs=117.2

Q ss_pred             CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEee---CCCC---EEEEEe-C--CCeEEEEEcCCCCCcc
Q 004969          465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLK---KYPS---KLIAGS-D--NGSLKLYDIRHMPPSI  535 (721)
Q Consensus       465 dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp---~d~~---~LaSgs-~--DGtVrIWDi~~~~~~~  535 (721)
                      ...+++.....+-+.+||+ +|+.++.++.    +.++.|..-|   -.+.   ++++.. .  +++|++|++......+
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~----g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l  113 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT----GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL  113 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC----SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC----CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCce
Confidence            3456666677888999999 7999888862    4566666543   1122   223333 3  5799999885322222


Q ss_pred             cccccCcceeEeccCCCeEEEEE--ecCCC--EEEEEeCCCcEEEEECC-------CCcEEEEEccccCCCeEEEEEcCC
Q 004969          536 RGMHYGAGTVTFDEFDQLTSVHV--NSMDE--LFLASGYSKNIALYDIN-------SGRRLQVFADMHKEHINVVKFSNH  604 (721)
Q Consensus       536 ~~~~~~~~~~~~~~~~~V~sv~~--sp~~~--~lls~g~Dg~IrlWDl~-------s~~~v~~l~~~h~~~V~sI~fsPd  604 (721)
                      .........+ -.....+..+++  ++..+  ++++...+|.+..|++.       +.+.+++|.  -.+.+..+...+.
T Consensus       114 ~~i~~~~~pv-~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~--lgsq~EgcvvDd~  190 (355)
T 3amr_A          114 QSMTDPDHPI-ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK--MNSQTEGMAADDE  190 (355)
T ss_dssp             EECSCTTSCE-ECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE--CSSCEEEEEEETT
T ss_pred             eeccccccCc-CCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec--CCCCcceEEEcCC
Confidence            2221100000 001144667777  66444  57777788999999883       346678887  4567888889887


Q ss_pred             CCcEEEEEECCCcEEEEECCCC---CceeEEEecCC--CCeE-EEEE--ecCCC-EEEEEe-CCCcEEEEEcC
Q 004969          605 SPSIFATSSFDQDVKLWDLRQK---PIQPCYTASSS--KGNV-MVCF--SPDDH-YLLGKG-SGTSMFVQSLR  667 (721)
Q Consensus       605 g~~lLaSgs~DgtIrIWDlrs~---~~~~~~~~~~~--~~~v-sl~f--Spdg~-~Lasgs-~Dg~I~VWDl~  667 (721)
                      . ..|..+-.+.-|..+|.+-.   ....+......  ...+ .++.  .++|+ ||++++ .+++..|||..
T Consensus       191 ~-g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          191 Y-GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             T-TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             C-CeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            7 57888888866666674421   11223333211  1123 4555  56666 777776 56689999996

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.27  E-value=5.4e-05  Score=79.06  Aligned_cols=102  Identities=18%  Similarity=0.203  Sum_probs=64.3

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeeccccccccccc-ccccceeeEEecccccccccccccccccccccchhc
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNM-IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLS  178 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (721)
                      .+|+.++|+.+.+..-.  .. ..--.=+.|+|++|+|..+.. ++.+++|++|+|. .|.|+.+..+.|..|++|+.|.
T Consensus        55 ~~L~~L~L~~n~l~~~~--~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~-~N~l~~l~~~~~~~l~~L~~L~  130 (290)
T 1p9a_G           55 TRLTQLNLDRAELTKLQ--VD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSLPLGALRGLGELQELY  130 (290)
T ss_dssp             TTCCEEECTTSCCCEEE--CC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECC-SSCCCCCCSSTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCccCccc--CC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECC-CCcCcccCHHHHcCCCCCCEEE
Confidence            46777777766543210  00 111233567777777776654 3466777777777 6777777777777777777777


Q ss_pred             cccccchhhhHHHHHhhcCCcchhhccce
Q 004969          179 MCETRVGNLWTTIAALSKLPSLAELRFQN  207 (721)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (721)
                      |.+|++..+  ...++.++++|++|.++.
T Consensus       131 L~~N~l~~~--~~~~~~~l~~L~~L~L~~  157 (290)
T 1p9a_G          131 LKGNELKTL--PPGLLTPTPKLEKLSLAN  157 (290)
T ss_dssp             CTTSCCCCC--CTTTTTTCTTCCEEECTT
T ss_pred             CCCCCCCcc--ChhhcccccCCCEEECCC
Confidence            777777654  123356777777776654

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.27  E-value=0.091  Score=62.05  Aligned_cols=216  Identities=10%  Similarity=0.085  Sum_probs=133.9

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecC------CCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSF------GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDI  528 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~------~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi  528 (721)
                      .|.++...+ ++.+ -.|+.++-|..|+..++.........      -....|.++... .++..|..|+.++-|..||.
T Consensus       358 ~V~~i~~d~-~g~l-WiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d-~~g~~lWigt~~~Gl~~~d~  434 (795)
T 4a2l_A          358 VVSCIVEDK-DKNL-WIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVD-EKKSLVYIGTHAGGLSILHR  434 (795)
T ss_dssp             SEEEEEECT-TSCE-EEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEE-TTTTEEEEEETTTEEEEEET
T ss_pred             eeEEEEECC-CCCE-EEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEc-CCCCEEEEEeCcCceeEEeC
Confidence            589998888 6664 45777777999999877655433211      123678898875 55664667777778999998


Q ss_pred             CCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEc-----cccCCCeEEEEEcC
Q 004969          529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFA-----DMHKEHINVVKFSN  603 (721)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~-----~~h~~~V~sI~fsP  603 (721)
                      .+++....  ......   .....|.++...+++...+. +. +.+.+||..+++......     ......|.++...+
T Consensus       435 ~~~~~~~~--~~~~~~---l~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~  507 (795)
T 4a2l_A          435 NSGQVENF--NQRNSQ---LVNENVYAILPDGEGNLWLG-TL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDS  507 (795)
T ss_dssp             TTCCEEEE--CTTTSC---CSCSCEEEEEECSSSCEEEE-ES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECT
T ss_pred             CCCcEEEe--ecCCCC---cCCCeeEEEEECCCCCEEEE-ec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECC
Confidence            87543111  100000   12345888888776665554 44 458899988775433221     11236789999998


Q ss_pred             CCCcEEEEEECCCcEEEEECCCCCceeEEEe--c---CCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCccccc---
Q 004969          604 HSPSIFATSSFDQDVKLWDLRQKPIQPCYTA--S---SSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDF---  674 (721)
Q Consensus       604 dg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~--~---~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~~~---  674 (721)
                      +| .+.+ |+. +-+..||..++..  .+..  .   .....+ ++..+++|...+++. . .+..||.....+..+   
T Consensus       508 ~g-~lWi-gt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~~~~~~  580 (795)
T 4a2l_A          508 HK-RLWI-GGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIKRYNTT  580 (795)
T ss_dssp             TC-CEEE-EES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEEEECGG
T ss_pred             CC-CEEE-EeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEEEeCCC
Confidence            88 4444 444 4588899877643  2110  0   111233 788889998776544 3 688898765544332   


Q ss_pred             ----ccCeEEEEECCCC
Q 004969          675 ----NMSILAAYTRPSS  687 (721)
Q Consensus       675 ----~~~V~~v~fsP~~  687 (721)
                          ...|.++...+++
T Consensus       581 ~gl~~~~i~~i~~d~~g  597 (795)
T 4a2l_A          581 NGLPNNVVYGILEDSFG  597 (795)
T ss_dssp             GTCSCSCEEEEEECTTS
T ss_pred             CCCchhheEEEEECCCC
Confidence                2357778787777

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=97.25  E-value=0.00014  Score=77.12  Aligned_cols=100  Identities=11%  Similarity=0.184  Sum_probs=62.7

Q ss_pred             cccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhc
Q 004969           99 DQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLS  178 (721)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (721)
                      -.+|+.++|.++.+..-.  . ...--.=+.|+++.|++..+..++.+++|++|+|. .+.++.+..  |..+|+|+.|.
T Consensus       176 l~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~-~n~l~~~~~--~~~l~~L~~L~  249 (347)
T 4fmz_A          176 LTDLYSLSLNYNQIEDIS--P-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIG-NNKITDLSP--LANLSQLTWLE  249 (347)
T ss_dssp             CTTCSEEECTTSCCCCCG--G-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECC-SSCCCCCGG--GTTCTTCCEEE
T ss_pred             CCCCCEEEccCCcccccc--c-ccCCCccceeecccCCCCCCchhhcCCcCCEEEcc-CCccCCCcc--hhcCCCCCEEE
Confidence            356788888776554211  1 11122335577777777766666677777777777 566666654  66777777777


Q ss_pred             cccccchhhhHHHHHhhcCCcchhhcccee
Q 004969          179 MCETRVGNLWTTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (721)
                      +.+|++..+    .++..+++|++|.+..|
T Consensus       250 l~~n~l~~~----~~~~~l~~L~~L~l~~n  275 (347)
T 4fmz_A          250 IGTNQISDI----NAVKDLTKLKMLNVGSN  275 (347)
T ss_dssp             CCSSCCCCC----GGGTTCTTCCEEECCSS
T ss_pred             CCCCccCCC----hhHhcCCCcCEEEccCC
Confidence            777766654    55666777777766654

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.25  E-value=0.073  Score=63.20  Aligned_cols=198  Identities=8%  Similarity=0.027  Sum_probs=122.7

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCC----eEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENE----NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH  530 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg----~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~  530 (721)
                      .+..|+|++.++.++++-...+.|+.+++...    .....+.  .......+|++.+..++++++-...+.|.+.++.+
T Consensus       425 ~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~--~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG  502 (791)
T 3m0c_C          425 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  502 (791)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC--SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             ceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe--cCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence            47899999955566666666788999998742    2222232  22345667777644456666667788999999886


Q ss_pred             CCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC--CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcE
Q 004969          531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY--SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSI  608 (721)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~--Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~l  608 (721)
                      ....         .+..........|+++|.++.|+.+..  .+.|...++.... ...+....-...+.|++.+.++++
T Consensus       503 ~~~~---------~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~-~~~lv~~~l~~P~GLavD~~~~~L  572 (791)
T 3m0c_C          503 VKRK---------TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRL  572 (791)
T ss_dssp             SSEE---------EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEECSSCSCEEEEEEETTTTEE
T ss_pred             CeEE---------EEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc-eEEEEeCCCCCceEEEEecCCCeE
Confidence            4321         111122234689999998888877764  3679999987443 334432244678999999877566


Q ss_pred             EEEEECCCcEEEEECCCCCceeEEEecC-CCCeEEEEEecCCCEEEEEe-CCCcEEEEEc
Q 004969          609 FATSSFDQDVKLWDLRQKPIQPCYTASS-SKGNVMVCFSPDDHYLLGKG-SGTSMFVQSL  666 (721)
Q Consensus       609 LaSgs~DgtIrIWDlrs~~~~~~~~~~~-~~~~vsl~fSpdg~~Lasgs-~Dg~I~VWDl  666 (721)
                      +++-...+.|..+|+.......+..... -..+..+++.  +.+|+.+. ..+.|...+.
T Consensus       573 YwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk  630 (791)
T 3m0c_C          573 YWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANR  630 (791)
T ss_dssp             EEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEET
T ss_pred             EEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeC
Confidence            6665667889999997654433332211 2234466664  34555444 4567777764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.25  E-value=6.4e-05  Score=77.28  Aligned_cols=76  Identities=24%  Similarity=0.338  Sum_probs=35.4

Q ss_pred             eEeeccccccccccc--ccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhcc
Q 004969          128 EVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRF  205 (721)
Q Consensus       128 ~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (721)
                      +.|+|++|++..+..  ++.+++|++|+|. .|.|+.+..+.|..|++|+.|.+.+|++..+-.  .++.++++|++|.+
T Consensus        55 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l  131 (276)
T 2z62_A           55 QVLDLSRCEIQTIEDGAYQSLSHLSTLILT-GNPIQSLALGAFSGLSSLQKLVAVETNLASLEN--FPIGHLKTLKELNV  131 (276)
T ss_dssp             SEEECTTCCCCEECTTTTTTCTTCCEEECT-TCCCCEECTTTTTTCTTCCEEECTTSCCCCSTT--CCCTTCTTCCEEEC
T ss_pred             cEEECCCCcCCccCHHHccCCcCCCEEECC-CCccCccChhhhcCCccccEEECCCCCccccCc--hhcccCCCCCEEEC
Confidence            445555555444432  4444555555555 444555544555555555555555554443311  02444445555443


Q ss_pred             c
Q 004969          206 Q  206 (721)
Q Consensus       206 ~  206 (721)
                      .
T Consensus       132 ~  132 (276)
T 2z62_A          132 A  132 (276)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.23  E-value=0.0099  Score=68.20  Aligned_cols=151  Identities=7%  Similarity=-0.016  Sum_probs=85.4

Q ss_pred             CeEEEEEcCCCCCcccccccCcceeEecc-CCCeEEEEEe-cCCC---EEEEEeCCCcEEEEECCCCcEEEEEcccc-CC
Q 004969          521 GSLKLYDIRHMPPSIRGMHYGAGTVTFDE-FDQLTSVHVN-SMDE---LFLASGYSKNIALYDINSGRRLQVFADMH-KE  594 (721)
Q Consensus       521 GtVrIWDi~~~~~~~~~~~~~~~~~~~~~-~~~V~sv~~s-p~~~---~lls~g~Dg~IrlWDl~s~~~v~~l~~~h-~~  594 (721)
                      +.|.-+|..+++........+.....+.. ..++. +... .++.   .++.++.+|.++++|..+|+.+..+.... ..
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~  369 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT  369 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence            68999999988764332111100000100 01221 1221 3453   56777889999999999999988765311 00


Q ss_pred             Ce-------------------------------------------EEEEEcCCCCcEEEEEE------------------
Q 004969          595 HI-------------------------------------------NVVKFSNHSPSIFATSS------------------  613 (721)
Q Consensus       595 ~V-------------------------------------------~sI~fsPdg~~lLaSgs------------------  613 (721)
                      ..                                           ..++++|+...+++...                  
T Consensus       370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~  449 (582)
T 1flg_A          370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA  449 (582)
T ss_dssp             SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred             ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence            00                                           13456666533333221                  


Q ss_pred             --------------CCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC-CCccccc
Q 004969          614 --------------FDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR-GDPFRDF  674 (721)
Q Consensus       614 --------------~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~l~~~  674 (721)
                                    .+|.|.-||+.+++..-.....  .....-.....+..++.|+.||.++.||.+ |+.+..+
T Consensus       450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~  523 (582)
T 1flg_A          450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH--LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKF  523 (582)
T ss_dssp             CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES--SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             eeccceeecCCCCCCcceEEEEECCCCCEEEEecCC--CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEe
Confidence                          2578999999998654333322  111111122356778889999999999987 6665444

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=97.22  E-value=7.3e-05  Score=82.84  Aligned_cols=79  Identities=18%  Similarity=0.264  Sum_probs=67.2

Q ss_pred             ceEeecccccccccccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhccc
Q 004969          127 CEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQ  206 (721)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (721)
                      =+.|+|++|++..+..++.+.+|++|+|+ .|.|+.+..+.|..+|+|+.|.+.+|++..+-  ..++.+|++|++|.+.
T Consensus       198 L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~  274 (452)
T 3zyi_A          198 LKYLNLGMCNIKDMPNLTPLVGLEELEMS-GNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE--RNAFDGLASLVELNLA  274 (452)
T ss_dssp             CCEEECTTSCCSSCCCCTTCTTCCEEECT-TSCCSEECGGGGTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECC
T ss_pred             CCEEECCCCcccccccccccccccEEECc-CCcCcccCcccccCccCCCEEEeCCCcCceEC--HHHhcCCCCCCEEECC
Confidence            46789999999999888899999999999 78899999999999999999999999987652  2567888999999776


Q ss_pred             ee
Q 004969          207 NW  208 (721)
Q Consensus       207 ~~  208 (721)
                      .+
T Consensus       275 ~N  276 (452)
T 3zyi_A          275 HN  276 (452)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=97.20  E-value=8.4e-05  Score=80.45  Aligned_cols=129  Identities=17%  Similarity=0.227  Sum_probs=87.4

Q ss_pred             cCCCcceeeEeecCCccccchHHHHHHHHHhcccceEeeccCCchhhH---HHHHhhcCCccceEeecccccccccc--c
Q 004969           68 IGATEIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKD---FIRNLSQRGLMCEVLNLRSSRFRKLN--M  142 (721)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--~  142 (721)
                      +.-+.+..+|+.+..-..+....    +.. -.+||+++|+++.+..-   .+..+    -.=+.|+|+.|++..+.  .
T Consensus        42 ~~l~~l~~l~l~~~~l~~l~~~~----~~~-l~~L~~L~L~~n~i~~~~~~~~~~l----~~L~~L~L~~n~l~~~~~~~  112 (390)
T 3o6n_A           42 ITLNNQKIVTFKNSTMRKLPAAL----LDS-FRQVELLNLNDLQIEEIDTYAFAYA----HTIQKLYMGFNAIRYLPPHV  112 (390)
T ss_dssp             GGGCCCSEEEEESCEESEECTHH----HHH-CCCCSEEECTTSCCCEECTTTTTTC----TTCCEEECCSSCCCCCCTTT
T ss_pred             cccCCceEEEecCCchhhCChhH----hcc-cccCcEEECCCCcccccChhhccCC----CCcCEEECCCCCCCcCCHHH
Confidence            44566777777654444444322    111 25688888888765421   11111    23467888888888873  4


Q ss_pred             ccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969          143 IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       143 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (721)
                      ++.+++|++|+|. .+.|+.++.+.|..+|+|+.|.+.+|++..+-  ..++.++++|++|.+..+
T Consensus       113 ~~~l~~L~~L~L~-~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n  175 (390)
T 3o6n_A          113 FQNVPLLTVLVLE-RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE--DDTFQATTSLQNLQLSSN  175 (390)
T ss_dssp             TTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC--TTTTSSCTTCCEEECCSS
T ss_pred             hcCCCCCCEEECC-CCccCcCCHHHhcCCCCCcEEECCCCccCccC--hhhccCCCCCCEEECCCC
Confidence            6788888888888 77888888888888888888888888887541  234778888888876654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=97.19  E-value=8.5e-05  Score=79.32  Aligned_cols=54  Identities=22%  Similarity=0.292  Sum_probs=25.1

Q ss_pred             eEeeccccccccccc--ccccceeeEEecccccccccccc-cccccccccchhccccc
Q 004969          128 EVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKE-DCFSCMPNLICLSMCET  182 (721)
Q Consensus       128 ~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  182 (721)
                      +.|+|++|++..+..  ++.+.+|++|+|. .|.|+.++. ..|..+|+|+.|.+.+|
T Consensus       103 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~l~~~~~~~~l~~L~~L~l~~n  159 (353)
T 2z80_A          103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLL-GNPYKTLGETSLFSHLTKLQILRVGNM  159 (353)
T ss_dssp             CEEECCSSCCSSCCHHHHTTCTTCSEEECT-TCCCSSSCSSCSCTTCTTCCEEEEEES
T ss_pred             CEEECCCCcCCcCCHhHhCCCccCCEEECC-CCCCcccCchhhhccCCCCcEEECCCC
Confidence            344444444444432  3344444444444 444444444 44444444444444444

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.19  E-value=0.19  Score=59.23  Aligned_cols=221  Identities=11%  Similarity=0.096  Sum_probs=136.3

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecC-----CCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSF-----GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIR  529 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~-----~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~  529 (721)
                      .|+++...+ ++.+. .|+.+| |.+|+..++.........     -....|.++... .++ .|-.|+.++-|..|+..
T Consensus       264 ~i~~i~~d~-~g~lW-igt~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D-~~g-~lWigt~~~Gl~~~~~~  338 (795)
T 4a2l_A          264 YIRSLAMDS-QNRLW-IGTFND-LNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMD-SQG-GMWLGTYFGGLNYYHPI  338 (795)
T ss_dssp             BEEEEEECT-TSCEE-EEESSC-EEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEEC-TTS-CEEEEESSSCEEEECGG
T ss_pred             eEEEEEEcC-CCCEE-EEeCCh-hheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEe-CCc-CEEEEECCCCeEEeCCC
Confidence            589998888 66654 455555 899998877655433211     123579999874 444 45667777788889876


Q ss_pred             CCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcc-------ccCCCeEEEEEc
Q 004969          530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD-------MHKEHINVVKFS  602 (721)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~-------~h~~~V~sI~fs  602 (721)
                      +......  ...... .-.....|.++...+++. +.+|+.++-+..||..+++.......       .....|.++...
T Consensus       339 ~~~~~~~--~~~~~~-~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d  414 (795)
T 4a2l_A          339 RNRFKNI--RNIPYK-NSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVD  414 (795)
T ss_dssp             GGSSEEE--CCCTTS-SSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEE
T ss_pred             cccceEE--cCCCCC-CCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEc
Confidence            5432110  000000 001124588888866555 55577777799999887764432211       124678999998


Q ss_pred             CCCCcEEEEEECCCcEEEEECCCCCceeEEEec--CCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCccccc-----
Q 004969          603 NHSPSIFATSSFDQDVKLWDLRQKPIQPCYTAS--SSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDF-----  674 (721)
Q Consensus       603 Pdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~--~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~~~-----  674 (721)
                      ++| .++..|+.++-+..||..+++........  .....+ ++...++|...+++.  +.+.+|+.....+..+     
T Consensus       415 ~~g-~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~~  491 (795)
T 4a2l_A          415 EKK-SLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL--SALVRFNPEQRSFTTIEKEKD  491 (795)
T ss_dssp             TTT-TEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES--SCEEEEETTTTEEEECCBCTT
T ss_pred             CCC-CEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec--CceeEEeCCCCeEEEcccccc
Confidence            888 54666777777999999887543221100  112234 788888888776543  5688898764433222     


Q ss_pred             -----ccCeEEEEECCCC
Q 004969          675 -----NMSILAAYTRPSS  687 (721)
Q Consensus       675 -----~~~V~~v~fsP~~  687 (721)
                           ...|.++...+++
T Consensus       492 ~~~~~~~~i~~i~~d~~g  509 (795)
T 4a2l_A          492 GTPVVSKQITTLFRDSHK  509 (795)
T ss_dssp             CCBCCCCCEEEEEECTTC
T ss_pred             ccccCCceEEEEEECCCC
Confidence                 2457788888777

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=97.16  E-value=0.00016  Score=78.24  Aligned_cols=102  Identities=17%  Similarity=0.314  Sum_probs=83.0

Q ss_pred             ccceEeeccCCchh---hHHHHHhhcCCccceEeecccccccccc--cccccceeeEEeccccccccccccccccccccc
Q 004969          100 QKLRVVDLHDSSFG---KDFIRNLSQRGLMCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNL  174 (721)
Q Consensus       100 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  174 (721)
                      .+||+++|+++.++   ..++..+.    .=++|+|+.|++..+.  .++.+++|++|+|. .+.|+.+..+.|..||+|
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~----~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L  119 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFR----QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMG-FNAIRYLPPHVFQNVPLL  119 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCC----CCSEEECTTSCCCEECTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTC
T ss_pred             CCceEEEecCCchhhCChhHhcccc----cCcEEECCCCcccccChhhccCCCCcCEEECC-CCCCCcCCHHHhcCCCCC
Confidence            57899999887654   34455543    3577999999999884  57899999999999 788999999999999999


Q ss_pred             chhccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969          175 ICLSMCETRVGNLWTTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (721)
                      +.|.+.+|++..+-.  .++.++++|++|.+..|
T Consensus       120 ~~L~L~~n~l~~l~~--~~~~~l~~L~~L~L~~n  151 (390)
T 3o6n_A          120 TVLVLERNDLSSLPR--GIFHNTPKLTTLSMSNN  151 (390)
T ss_dssp             CEEECCSSCCCCCCT--TTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCccCcCCH--HHhcCCCCCcEEECCCC
Confidence            999999999986522  23678999999988764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.15  E-value=0.00014  Score=83.37  Aligned_cols=105  Identities=23%  Similarity=0.389  Sum_probs=81.1

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeeccccccccc-ccccccceeeEEecccccccccccccccccccccchhc
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKL-NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLS  178 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (721)
                      ..|++++|..+.+..  +.++. .=-.=+.|+|++|+|..| ..++.+++|++|+|+ .|.|+.++  -|..||+|+.|.
T Consensus       441 ~~L~~L~Ls~n~l~~--lp~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls-~N~l~~lp--~l~~l~~L~~L~  514 (567)
T 1dce_A          441 ADVRVLHLAHKDLTV--LCHLE-QLLLVTHLDLSHNRLRALPPALAALRCLEVLQAS-DNALENVD--GVANLPRLQELL  514 (567)
T ss_dssp             TTCSEEECTTSCCSS--CCCGG-GGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECC-SSCCCCCG--GGTTCSSCCEEE
T ss_pred             cCceEEEecCCCCCC--CcCcc-ccccCcEeecCcccccccchhhhcCCCCCEEECC-CCCCCCCc--ccCCCCCCcEEE
Confidence            368999999987653  22211 111347799999999988 678899999999999 88999997  699999999999


Q ss_pred             cccccchhhhHHHHHhhcCCcchhhccceeeec
Q 004969          179 MCETRVGNLWTTIAALSKLPSLAELRFQNWLCC  211 (721)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (721)
                      +.+|++..+= ...++.+|++|+.|.+..+.-+
T Consensus       515 Ls~N~l~~~~-~p~~l~~l~~L~~L~L~~N~l~  546 (567)
T 1dce_A          515 LCNNRLQQSA-AIQPLVSCPRLVLLNLQGNSLC  546 (567)
T ss_dssp             CCSSCCCSSS-TTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCCCCCCCC-CcHHHhcCCCCCEEEecCCcCC
Confidence            9999998651 1356788999999988776443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.13  E-value=0.0001  Score=75.75  Aligned_cols=80  Identities=20%  Similarity=0.334  Sum_probs=69.2

Q ss_pred             cceEeecccccccccc--cccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhh
Q 004969          126 MCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAEL  203 (721)
Q Consensus       126 ~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (721)
                      .-+.|+|++|++..+.  .++.+++|++|+|. .+.|+.+..+.|..+++|+.|.+.+|++..+  ...++.++++|++|
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L  105 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLS-RCEIQTIEDGAYQSLSHLSTLILTGNPIQSL--ALGAFSGLSSLQKL  105 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECT-TCCCCEECTTTTTTCTTCCEEECTTCCCCEE--CTTTTTTCTTCCEE
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECC-CCcCCccCHHHccCCcCCCEEECCCCccCcc--ChhhhcCCccccEE
Confidence            3578999999999887  57889999999999 7799999999999999999999999999866  22468899999999


Q ss_pred             cccee
Q 004969          204 RFQNW  208 (721)
Q Consensus       204 ~~~~~  208 (721)
                      .+..+
T Consensus       106 ~l~~n  110 (276)
T 2z62_A          106 VAVET  110 (276)
T ss_dssp             ECTTS
T ss_pred             ECCCC
Confidence            87654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=97.13  E-value=7.9e-05  Score=78.35  Aligned_cols=108  Identities=20%  Similarity=0.263  Sum_probs=59.7

Q ss_pred             ccceEeeccCCchhhHHHHHhh-cCCccceEeecccccccccc-ccccc-----ceeeEEeccccccccccccccccccc
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLS-QRGLMCEVLNLRSSRFRKLN-MIGEF-----KRIHTLNLDYSTSLTSFKEDCFSCMP  172 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~  172 (721)
                      .+|+.++|.++.+....-..++ ..--.=+.|+|++|+|..+. .++.+     ++|++|+|. .|.|+.+..+-|..||
T Consensus        95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~-~N~l~~~~~~~~~~l~  173 (312)
T 1wwl_A           95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA-QAHSLNFSCEQVRVFP  173 (312)
T ss_dssp             SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEE-SCSCCCCCTTTCCCCS
T ss_pred             CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEee-CCCCccchHHHhccCC
Confidence            4677777777655432222221 11123356777777666541 12222     667777777 6667777666677777


Q ss_pred             ccchhccccccchhhhHHHHHh--hcCCcchhhcccee
Q 004969          173 NLICLSMCETRVGNLWTTIAAL--SKLPSLAELRFQNW  208 (721)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  208 (721)
                      +|+.|.|.+|++...-.-..++  .++++|++|.++.|
T Consensus       174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N  211 (312)
T 1wwl_A          174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA  211 (312)
T ss_dssp             SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS
T ss_pred             CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC
Confidence            7777777777643221222334  66666766665543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.11  E-value=0.00088  Score=72.59  Aligned_cols=133  Identities=18%  Similarity=0.190  Sum_probs=99.3

Q ss_pred             CcceeeEeecCCccccchHHHHHHHHHhcccceEeeccCCchhhHHHHHhhc----CCccceEeeccccccccccc----
Q 004969           71 TEIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKDFIRNLSQ----RGLMCEVLNLRSSRFRKLNM----  142 (721)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~----  142 (721)
                      ..++.+|+   +.|.+..+-+..+..++. +|+.++|.++.++..-++.|+.    ..-.=+.|+|++|+|...+.    
T Consensus       101 ~~L~~L~L---s~n~l~~~~~~~l~~~L~-~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~  176 (372)
T 3un9_A          101 HALDEVNL---ASCQLDPAGLRTLLPVFL-RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLM  176 (372)
T ss_dssp             SCEEEEEC---TTCCCCHHHHHHTHHHHH-TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHH
T ss_pred             CCceEEEe---cCCCCCHHHHHHHHHHHH-hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHH
Confidence            47888887   445677777666666654 7999999999998877776653    23445789999999876332    


Q ss_pred             --ccccceeeEEeccccccccccc----ccccccccccchhccccccchhhh--HHHHHhhcCCcchhhcccee
Q 004969          143 --IGEFKRIHTLNLDYSTSLTSFK----EDCFSCMPNLICLSMCETRVGNLW--TTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       143 --~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  208 (721)
                        +...+.|++|+|. .|.|+...    ...+..+++|+.|.|.+|+|.+.-  .-..+|.+.++|++|++..|
T Consensus       177 ~~L~~~~~L~~L~Ls-~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N  249 (372)
T 3un9_A          177 EGLAGNTSVTHLSLL-HTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN  249 (372)
T ss_dssp             HHHHTCSSCCEEECT-TSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred             HHHhcCCCcCEEeCC-CCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence              2457889999999 67788654    355677899999999999998632  22356778899999987654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=97.10  E-value=7.3e-05  Score=79.43  Aligned_cols=130  Identities=20%  Similarity=0.225  Sum_probs=80.0

Q ss_pred             cCCCcceeeEeecCCccccchHHHHHHHHHhcccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccc-ccccc
Q 004969           68 IGATEIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN-MIGEF  146 (721)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  146 (721)
                      .....+..+|+.+..-..+..+.     .. =.+|+.++|.++.+. ..-..+ ..=-.=+.|+|++|+|..+- -++.+
T Consensus        78 ~~~~~l~~L~L~~n~l~~lp~~l-----~~-l~~L~~L~L~~n~l~-~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l  149 (328)
T 4fcg_A           78 ATQPGRVALELRSVPLPQFPDQA-----FR-LSHLQHMTIDAAGLM-ELPDTM-QQFAGLETLTLARNPLRALPASIASL  149 (328)
T ss_dssp             HTSTTCCEEEEESSCCSSCCSCG-----GG-GTTCSEEEEESSCCC-CCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGC
T ss_pred             ccccceeEEEccCCCchhcChhh-----hh-CCCCCEEECCCCCcc-chhHHH-hccCCCCEEECCCCccccCcHHHhcC
Confidence            34566777777543322332221     01 236788888777655 211111 11123466888888887664 45677


Q ss_pred             ceeeEEecccccccccccccc--------cccccccchhccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969          147 KRIHTLNLDYSTSLTSFKEDC--------FSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       147 ~~~~~l~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (721)
                      ++|++|+|.+|+.++.++...        |..||+|+.|.+.+|++..+-   ..+.+|++|++|.+..|
T Consensus       150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp---~~l~~l~~L~~L~L~~N  216 (328)
T 4fcg_A          150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP---ASIANLQNLKSLKIRNS  216 (328)
T ss_dssp             TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCC---GGGGGCTTCCEEEEESS
T ss_pred             cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcch---HhhcCCCCCCEEEccCC
Confidence            888888888777777776643        556888888888888877442   34777888888877654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=97.09  E-value=0.00015  Score=80.57  Aligned_cols=77  Identities=21%  Similarity=0.329  Sum_probs=42.5

Q ss_pred             eEeeccccccccc--ccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhcc
Q 004969          128 EVLNLRSSRFRKL--NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRF  205 (721)
Q Consensus       128 ~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (721)
                      +.|+|++|++..+  ..++.+.+|++|+|. .|.|+.+....|..+|+|+.|.+.+|++..+.  ..++.++++|++|++
T Consensus       107 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~l  183 (477)
T 2id5_A          107 TKLDISENKIVILLDYMFQDLYNLKSLEVG-DNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP--TEALSHLHGLIVLRL  183 (477)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEEEC-CTTCCEECTTSSTTCTTCCEEEEESCCCSSCC--HHHHTTCTTCCEEEE
T ss_pred             CEEECCCCccccCChhHccccccCCEEECC-CCccceeChhhccCCCCCCEEECCCCcCcccC--hhHhcccCCCcEEeC
Confidence            4455555555554  234455556666665 55555555555666666666666666555442  234555666666655


Q ss_pred             ce
Q 004969          206 QN  207 (721)
Q Consensus       206 ~~  207 (721)
                      +.
T Consensus       184 ~~  185 (477)
T 2id5_A          184 RH  185 (477)
T ss_dssp             ES
T ss_pred             CC
Confidence            44

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=97.09  E-value=0.00021  Score=79.43  Aligned_cols=98  Identities=16%  Similarity=0.272  Sum_probs=76.7

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhcc
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM  179 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (721)
                      .+||++||.++.+..-.  . ...=-.=+.|+|++|++..+.-++.+.+|++|+|. .+.|+.+..  |..+|+|+.|.+
T Consensus        68 ~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~-~n~l~~~~~--~~~l~~L~~L~l  141 (466)
T 1o6v_A           68 NNLTQINFSNNQLTDIT--P-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF-NNQITDIDP--LKNLTNLNRLEL  141 (466)
T ss_dssp             TTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECC-SSCCCCCGG--GTTCTTCSEEEE
T ss_pred             cCCCEEECCCCccCCch--h-hhccccCCEEECCCCccccChhhcCCCCCCEEECC-CCCCCCChH--HcCCCCCCEEEC
Confidence            57899999887654321  1 11112346799999999988888899999999999 678888865  899999999999


Q ss_pred             ccccchhhhHHHHHhhcCCcchhhccce
Q 004969          180 CETRVGNLWTTIAALSKLPSLAELRFQN  207 (721)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (721)
                      .+|++..+    .++.+|++|++|++.+
T Consensus       142 ~~n~l~~~----~~~~~l~~L~~L~l~~  165 (466)
T 1o6v_A          142 SSNTISDI----SALSGLTSLQQLSFGN  165 (466)
T ss_dssp             EEEEECCC----GGGTTCTTCSEEEEEE
T ss_pred             CCCccCCC----hhhccCCcccEeecCC
Confidence            99998876    6788999999998754

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=97.07  E-value=0.00014  Score=75.80  Aligned_cols=107  Identities=18%  Similarity=0.238  Sum_probs=79.9

Q ss_pred             cccceEeeccCCchhhHHHHHhhcCCccceEeeccccccccc--ccccccceeeEEeccccccccc-ccccccccccccc
Q 004969           99 DQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKL--NMIGEFKRIHTLNLDYSTSLTS-FKEDCFSCMPNLI  175 (721)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~  175 (721)
                      -.+|+.++|+++.+..--.-..+..=-+=+.|+|++|++...  ..++.+++|++|+|. .+.++. +....|..+|+|+
T Consensus       100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~~l~~L~  178 (306)
T 2z66_A          100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA-GNSFQENFLPDIFTELRNLT  178 (306)
T ss_dssp             CTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECT-TCEEGGGEECSCCTTCTTCC
T ss_pred             CCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECC-CCccccccchhHHhhCcCCC
Confidence            368999999987654321101111112346799999998865  346788999999999 778876 5668899999999


Q ss_pred             hhccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969          176 CLSMCETRVGNLWTTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (721)
                      .|.|.+|++..+  ...++.++++|++|.+..+
T Consensus       179 ~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~N  209 (306)
T 2z66_A          179 FLDLSQCQLEQL--SPTAFNSLSSLQVLNMSHN  209 (306)
T ss_dssp             EEECTTSCCCEE--CTTTTTTCTTCCEEECTTS
T ss_pred             EEECCCCCcCCc--CHHHhcCCCCCCEEECCCC
Confidence            999999998765  1246788999999998875

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.07  E-value=0.0001  Score=74.03  Aligned_cols=81  Identities=16%  Similarity=0.272  Sum_probs=68.6

Q ss_pred             cceEeeccccccccccc--ccccceeeEEecccccccccccccccccccccchhcccc-ccchhhhHHHHHhhcCCcchh
Q 004969          126 MCEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCE-TRVGNLWTTIAALSKLPSLAE  202 (721)
Q Consensus       126 ~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  202 (721)
                      .=+.|+|++|+|..+.-  ++.+++|++|+|..+..|+.+..+.|..+|+|+.|.|.+ |++..+  ...++.++++|++
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i--~~~~f~~l~~L~~  109 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI--DPDALKELPLLKF  109 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE--CTTSEECCTTCCE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc--CHHHhCCCCCCCE
Confidence            45689999999999864  788999999999944459999999999999999999998 888755  1236778999999


Q ss_pred             hcccee
Q 004969          203 LRFQNW  208 (721)
Q Consensus       203 ~~~~~~  208 (721)
                      |.+..+
T Consensus       110 L~l~~n  115 (239)
T 2xwt_C          110 LGIFNT  115 (239)
T ss_dssp             EEEEEE
T ss_pred             EeCCCC
Confidence            988775

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.07  E-value=0.00016  Score=81.29  Aligned_cols=102  Identities=18%  Similarity=0.218  Sum_probs=47.9

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhcc
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM  179 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (721)
                      .+|+.++|.++.+.......++..=-.=+.|+|++|+|..+.-...+++|.+|+|+ .|.|+.++.+ |..+|+|+.|.+
T Consensus       144 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~-~~~l~~L~~L~L  221 (487)
T 3oja_A          144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLS-SNKLAFMGPE-FQSAAGVTWISL  221 (487)
T ss_dssp             SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECC-SSCCCEECGG-GGGGTTCSEEEC
T ss_pred             CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECC-CCCCCCCCHh-HcCCCCccEEEe
Confidence            34555555555443322222221111234455555555555444445555555555 4555555544 555555555555


Q ss_pred             ccccchhhhHHHHHhhcCCcchhhccc
Q 004969          180 CETRVGNLWTTIAALSKLPSLAELRFQ  206 (721)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (721)
                      .+|++..+=   .++..+++|..|.+.
T Consensus       222 s~N~l~~lp---~~l~~l~~L~~L~l~  245 (487)
T 3oja_A          222 RNNKLVLIE---KALRFSQNLEHFDLR  245 (487)
T ss_dssp             TTSCCCEEC---TTCCCCTTCCEEECT
T ss_pred             cCCcCcccc---hhhccCCCCCEEEcC
Confidence            555555321   124444555555444

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.06  E-value=0.0001  Score=84.17  Aligned_cols=104  Identities=18%  Similarity=0.314  Sum_probs=65.2

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccc--cccccceeeEEecccccccccccccccccccccchh
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL  177 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  177 (721)
                      .+|++.+|.++.+...+..+.++.--+=+.|||++|++..+.  .++.+.+|++|+|. .|+|+++....|..+|+|+.|
T Consensus       469 ~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls-~N~l~~l~~~~~~~l~~L~~L  547 (635)
T 4g8a_A          469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS-HNNFFSLDTFPYKCLNSLQVL  547 (635)
T ss_dssp             TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT-TSCCCBCCCGGGTTCTTCCEE
T ss_pred             hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECC-CCcCCCCChhHHhCCCCCCEE
Confidence            456666776665444333333333334466777777777763  46667777777777 667777777777777777777


Q ss_pred             ccccccchhhhHHHHHhhcC-Ccchhhccc
Q 004969          178 SMCETRVGNLWTTIAALSKL-PSLAELRFQ  206 (721)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  206 (721)
                      .+.+|++..+-  -.++..+ ++|+.|++.
T Consensus       548 ~Ls~N~l~~~~--~~~l~~l~~~L~~L~L~  575 (635)
T 4g8a_A          548 DYSLNHIMTSK--KQELQHFPSSLAFLNLT  575 (635)
T ss_dssp             ECTTSCCCBCC--SSCTTCCCTTCCEEECT
T ss_pred             ECCCCcCCCCC--HHHHHhhhCcCCEEEee
Confidence            77777776441  1345555 357766654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.04  E-value=0.18  Score=58.33  Aligned_cols=196  Identities=7%  Similarity=0.027  Sum_probs=126.3

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .+..|+|++.++.++.+-..++.|..+++........+.. + .....++++.+..+++.++-...+.|.+.++.+....
T Consensus        38 ~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~-g-~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~  115 (628)
T 4a0p_A           38 EASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEF-G-LDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQ  115 (628)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS-S-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCE
T ss_pred             ceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeC-C-CCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEE
Confidence            4789999996666666666789999999875544433331 2 2345677775345556666666789999998764321


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC--CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY--SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS  612 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~--Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg  612 (721)
                      .         ...........++++|..+.++.+..  .+.|...++..... ..+.. .-...+.+++++++.++.++-
T Consensus       116 ~---------l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l~~-~~~~P~GlalD~~~~~LY~aD  184 (628)
T 4a0p_A          116 V---------LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTLVP-NVGRANGLTIDYAKRRLYWTD  184 (628)
T ss_dssp             E---------EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEEC-SCSSEEEEEEETTTTEEEEEE
T ss_pred             E---------EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EEEEC-CCCCcceEEEccccCEEEEEE
Confidence            1         11112234589999998888877763  46788888874433 33332 456788999999875666666


Q ss_pred             ECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004969          613 SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSL  666 (721)
Q Consensus       613 s~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl  666 (721)
                      ...+.|..+|+...... +. ......+..+++.. +..+++-...+.|...|.
T Consensus       185 ~~~~~I~~~d~dG~~~~-v~-~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk  235 (628)
T 4a0p_A          185 LDTNLIESSNMLGLNRE-VI-ADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANK  235 (628)
T ss_dssp             TTTTEEEEEETTSCSCE-EE-EECCSCEEEEEEET-TEEEEEETTTTEEEEEET
T ss_pred             CCCCEEEEEcCCCCceE-Ee-eccCCCceEEEEEC-CEEEEecCCCCEEEEEEC
Confidence            77889999999765432 22 22334455777764 333344444677887774

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.04  E-value=0.077  Score=56.19  Aligned_cols=211  Identities=12%  Similarity=0.123  Sum_probs=122.7

Q ss_pred             cCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCC----CC--CCeEEEEEe--eCCCCEEEEEe-------
Q 004969          454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFG----AM--NSVLGLCWL--KKYPSKLIAGS-------  518 (721)
Q Consensus       454 ~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~----H~--~~V~sl~fs--p~d~~~LaSgs-------  518 (721)
                      .++-++.|++.++.++++.-..|+|..|+...+..... ...+    ..  ..+.+|.|.  .+++.++++..       
T Consensus        13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~   91 (334)
T 2p9w_A           13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF   91 (334)
T ss_dssp             CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred             cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence            36788999995555555555899999999986654433 2211    11  146799993  24456666433       


Q ss_pred             ------CCCeEEEEEcC---CCCCccc-ccccCcce-eEe-c-cCCCeEEEEEecCCCEEEEEeCC-CcEEEEECCCCcE
Q 004969          519 ------DNGSLKLYDIR---HMPPSIR-GMHYGAGT-VTF-D-EFDQLTSVHVNSMDELFLASGYS-KNIALYDINSGRR  584 (721)
Q Consensus       519 ------~DGtVrIWDi~---~~~~~~~-~~~~~~~~-~~~-~-~~~~V~sv~~sp~~~~lls~g~D-g~IrlWDl~s~~~  584 (721)
                            .+..|..+|+.   +++.... .+...... ... . .......++..++|+..++.+.. +.|..++.... .
T Consensus        92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~  170 (334)
T 2p9w_A           92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-T  170 (334)
T ss_dssp             TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-C
T ss_pred             cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-E
Confidence                  26789999998   5554211 11000000 000 0 01236889999999999988877 88888887633 3


Q ss_pred             EEEEc-c----ccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEec--CC----CCeEE-EEEecCCCE-
Q 004969          585 LQVFA-D----MHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTAS--SS----KGNVM-VCFSPDDHY-  651 (721)
Q Consensus       585 v~~l~-~----~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~--~~----~~~vs-l~fSpdg~~-  651 (721)
                      +..+. .    ......+.|+++|+| ++|++....|.+..+|+++.... .....  +.    ...-. +.--.+|+. 
T Consensus       171 ~~~~~~~~~~~~~~~G~nGIv~~pdg-~~Liv~~~~g~L~~fD~~~pv~~-~v~~~~~G~~~~~~~~dgilp~~~~G~vl  248 (334)
T 2p9w_A          171 VSTFAWESGNGGQRPGYSGITFDPHS-NKLIAFGGPRALTAFDVSKPYAW-PEPVKINGDFGTLSGTEKIVTVPVGNESV  248 (334)
T ss_dssp             EEEEEECCCCSSSCCSCSEEEEETTT-TEEEEESSSSSEEEEECSSSSCC-CEECEESSCCCCCTTEEEEEEEEETTEEE
T ss_pred             EeeeeecCCCcccccCcceEEEeCCC-CEEEEEcCCCeEEEEcCCCCcce-eecccccCCcccccCcccccccccCCEEE
Confidence            33221 1    112246799999999 66666655999999999853220 12221  21    11223 333347877 


Q ss_pred             EEEEeCCCcEEEEEcCC
Q 004969          652 LLGKGSGTSMFVQSLRG  668 (721)
Q Consensus       652 Lasgs~Dg~I~VWDl~g  668 (721)
                      +++.+..+.+.+.+-.+
T Consensus       249 lV~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          249 LVGARAPYAISFRSWDN  265 (334)
T ss_dssp             EEEEETTEEEEEECSST
T ss_pred             EEEcCCCCEEEEECCCC
Confidence            44445555555555443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.01  E-value=0.00028  Score=67.78  Aligned_cols=87  Identities=11%  Similarity=0.160  Sum_probs=68.2

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeeccccccccccc--ccccceeeEEecccccccccccccccccccccchh
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL  177 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  177 (721)
                      ..|+.++|.++.+..-. .+.+..=-.=+.|+|++|+|..+.-  ++.+.+|++|+|. .|.|+.+..+.|..||+|+.|
T Consensus        33 ~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~-~N~l~~l~~~~~~~l~~L~~L  110 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLE-PGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN-DNHLKSIPRGAFDNLKSLTHI  110 (174)
T ss_dssp             TTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCSEE
T ss_pred             CCCcEEEeCCCCccccC-HHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC-CCccceeCHHHhccccCCCEE
Confidence            57888999887764321 1111111235779999999999854  6789999999999 899999999999999999999


Q ss_pred             ccccccchhhh
Q 004969          178 SMCETRVGNLW  188 (721)
Q Consensus       178 ~~~~~~~~~~~  188 (721)
                      .|.+|.+.-..
T Consensus       111 ~L~~N~~~c~~  121 (174)
T 2r9u_A          111 YLYNNPWDCEC  121 (174)
T ss_dssp             ECCSSCBCTTB
T ss_pred             EeCCCCccccc
Confidence            99999877443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=97.01  E-value=0.00015  Score=79.93  Aligned_cols=103  Identities=16%  Similarity=0.260  Sum_probs=57.7

Q ss_pred             ccceEeeccCCchhh----HHHHHhhcCCccceEeeccccccccc--ccccccceeeEEeccccccccc--ccccccccc
Q 004969          100 QKLRVVDLHDSSFGK----DFIRNLSQRGLMCEVLNLRSSRFRKL--NMIGEFKRIHTLNLDYSTSLTS--FKEDCFSCM  171 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~  171 (721)
                      .+||.++|+++.+..    +.+..|    -.=+.|+|++|+|..+  ..++.+.+|++|+|. .+.|+.  +..+.|..+
T Consensus        54 ~~L~~L~L~~n~~~~~i~~~~~~~l----~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~~~l  128 (455)
T 3v47_A           54 QDLQFLKVEQQTPGLVIRNNTFRGL----SSLIILKLDYNQFLQLETGAFNGLANLEVLTLT-QCNLDGAVLSGNFFKPL  128 (455)
T ss_dssp             TTCCEEECCCCSTTCEECTTTTTTC----TTCCEEECTTCTTCEECTTTTTTCTTCCEEECT-TSCCBTHHHHSSTTTTC
T ss_pred             ccccEEECcCCcccceECccccccc----ccCCEEeCCCCccCccChhhccCcccCCEEeCC-CCCCCccccCcccccCc
Confidence            356677776664431    222222    1235567777766655  245666677777776 556655  444556667


Q ss_pred             cccchhccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969          172 PNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (721)
                      ++|+.|.+.+|++..+- ..+.+.++++|++|.+..+
T Consensus       129 ~~L~~L~L~~n~l~~~~-~~~~~~~l~~L~~L~L~~n  164 (455)
T 3v47_A          129 TSLEMLVLRDNNIKKIQ-PASFFLNMRRFHVLDLTFN  164 (455)
T ss_dssp             TTCCEEECCSSBCCSCC-CCGGGGGCTTCCEEECTTC
T ss_pred             ccCCEEECCCCccCccC-cccccCCCCcccEEeCCCC
Confidence            77777777777665431 0111566666666665443

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.00  E-value=0.096  Score=55.06  Aligned_cols=183  Identities=8%  Similarity=0.042  Sum_probs=115.1

Q ss_pred             CCeEEEEECCCCe--EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCC
Q 004969          475 DGEIVVVNHENEN--IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQ  552 (721)
Q Consensus       475 DG~I~IWdl~tg~--~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~  552 (721)
                      ...|+.+++....  ....+.   ....+.+++|.+.++.++.+-...+.|..++..+....        ..+.......
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~---~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~--------~~~~~~~l~~   80 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVG---GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV--------QNVVVSGLLS   80 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEE---EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCC--------CEEEEECCSC
T ss_pred             cCeEEEEECCCCceEEEEEec---CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCce--------EEEEcCCCCC
Confidence            4679999998653  222221   12356789998556666666667889999998775321        0111112234


Q ss_pred             eEEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE-CCCcEEEEECCCCCcee
Q 004969          553 LTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS-FDQDVKLWDLRQKPIQP  630 (721)
Q Consensus       553 V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs-~DgtIrIWDlrs~~~~~  630 (721)
                      ...+++.+.++.++.+. ..+.|.++++........+.. .......+++.|.++.++.+-. ..+.|...++...... 
T Consensus        81 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~-~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-  158 (318)
T 3sov_A           81 PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQ-ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF-  158 (318)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS-SCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCE-
T ss_pred             ccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeC-CCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeE-
Confidence            56788877677666665 467899999875433333322 4556789999997645555542 3578888888754322 


Q ss_pred             EEEecCCCCeEEEEEecCCCEEEEEe-CCCcEEEEEcCCCc
Q 004969          631 CYTASSSKGNVMVCFSPDDHYLLGKG-SGTSMFVQSLRGDP  670 (721)
Q Consensus       631 ~~~~~~~~~~vsl~fSpdg~~Lasgs-~Dg~I~VWDl~g~~  670 (721)
                      ......-..+..++++|++..|+.+. ..+.|..+++.|..
T Consensus       159 ~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~  199 (318)
T 3sov_A          159 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN  199 (318)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             EEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc
Confidence            22222334456899999777776654 46789999988643

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=96.99  E-value=0.00018  Score=77.29  Aligned_cols=79  Identities=23%  Similarity=0.323  Sum_probs=67.5

Q ss_pred             ceEeeccccccccccc--cc-ccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhh
Q 004969          127 CEVLNLRSSRFRKLNM--IG-EFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAEL  203 (721)
Q Consensus       127 ~~~~~~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (721)
                      -+.|+|++|+|..+..  ++ .+.+|++|+|. .|.|+.+..+.|..||+|+.|.|.+|++..+-  -.++..|++|++|
T Consensus        41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~-~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L  117 (361)
T 2xot_A           41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLS-HNHLNFISSEAFVPVPNLRYLDLSSNHLHTLD--EFLFSDLQALEVL  117 (361)
T ss_dssp             CSEEECCSSCCCEECTTSSSSCCTTCCEEECC-SSCCCEECTTTTTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEE
T ss_pred             CCEEECCCCCCCccChhhhhhcccccCEEECC-CCcCCccChhhccCCCCCCEEECCCCcCCcCC--HHHhCCCcCCCEE
Confidence            4789999999998864  44 88999999999 88999999999999999999999999998661  2347889999999


Q ss_pred             cccee
Q 004969          204 RFQNW  208 (721)
Q Consensus       204 ~~~~~  208 (721)
                      .+..+
T Consensus       118 ~L~~N  122 (361)
T 2xot_A          118 LLYNN  122 (361)
T ss_dssp             ECCSS
T ss_pred             ECCCC
Confidence            87643

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=96.99  E-value=0.00036  Score=76.73  Aligned_cols=79  Identities=16%  Similarity=0.342  Sum_probs=59.0

Q ss_pred             ceEeeccccccccc--ccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhc
Q 004969          127 CEVLNLRSSRFRKL--NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELR  204 (721)
Q Consensus       127 ~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (721)
                      -+.|+|+.|++..+  ..++.+++|++|+|. .|.|+.+....|..||+|+.|.|.+|++..+  ...++.++++|++|.
T Consensus       277 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~  353 (455)
T 3v47_A          277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLA-QNEINKIDDNAFWGLTHLLKLNLSQNFLGSI--DSRMFENLDKLEVLD  353 (455)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECCSSCCCEE--CGGGGTTCTTCCEEE
T ss_pred             ceEEEecCccccccchhhcccCCCCCEEECC-CCcccccChhHhcCcccCCEEECCCCccCCc--ChhHhcCcccCCEEE
Confidence            45677777777665  336677888888888 7788888888888888888888888887543  124567788888887


Q ss_pred             ccee
Q 004969          205 FQNW  208 (721)
Q Consensus       205 ~~~~  208 (721)
                      ++.|
T Consensus       354 Ls~N  357 (455)
T 3v47_A          354 LSYN  357 (455)
T ss_dssp             CCSS
T ss_pred             CCCC
Confidence            7654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=96.99  E-value=0.00035  Score=73.54  Aligned_cols=96  Identities=23%  Similarity=0.352  Sum_probs=54.5

Q ss_pred             cceEeeccCCchhhHHHHHhhcCCccceEeecccccccccc--cccccceeeEEecccccccccccccccccccccchhc
Q 004969          101 KLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLS  178 (721)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (721)
                      ++.+.++.++.+ ...+..+++.--.=+.|+|++|+|..+.  .++.+++|++|+|. .|.|+.+..  |..||+|+.|.
T Consensus        11 ~l~i~~ls~~~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~--~~~l~~L~~L~   86 (317)
T 3o53_A           11 RYKIEKVTDSSL-KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS-SNVLYETLD--LESLSTLRTLD   86 (317)
T ss_dssp             EEEEESCCTTTH-HHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECT-TSCCEEEEE--ETTCTTCCEEE
T ss_pred             ceeEeeccccch-hhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECC-CCcCCcchh--hhhcCCCCEEE
Confidence            455556666555 3344555554445556666666666654  35566666666666 555655543  66666666666


Q ss_pred             cccccchhhhHHHHHhhcCCcchhhccce
Q 004969          179 MCETRVGNLWTTIAALSKLPSLAELRFQN  207 (721)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (721)
                      +.+|++..+       ..+++|++|.+..
T Consensus        87 Ls~n~l~~l-------~~~~~L~~L~l~~  108 (317)
T 3o53_A           87 LNNNYVQEL-------LVGPSIETLHAAN  108 (317)
T ss_dssp             CCSSEEEEE-------EECTTCCEEECCS
T ss_pred             CcCCccccc-------cCCCCcCEEECCC
Confidence            666666543       2335555555443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=96.98  E-value=0.0006  Score=75.01  Aligned_cols=85  Identities=19%  Similarity=0.225  Sum_probs=38.8

Q ss_pred             ccceEeeccCCchhhHHHHHhhc---CCccceEeecccccccccc-------cccccceeeEEeccccccccccc----c
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQ---RGLMCEVLNLRSSRFRKLN-------MIGEFKRIHTLNLDYSTSLTSFK----E  165 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~----~  165 (721)
                      .+|+.++|.++.++...+..+..   .--.=+.|+|+.|++...+       +.+.+++|++|+|. .+.|+...    .
T Consensus       199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~-~n~l~~~~~~~l~  277 (461)
T 1z7x_W          199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIW-ECGITAKGCGDLC  277 (461)
T ss_dssp             CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT-TSCCCHHHHHHHH
T ss_pred             CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECc-CCCCCHHHHHHHH
Confidence            35666666665555443222221   1122234555555554432       11234555555555 33555421    1


Q ss_pred             cccccccccchhccccccch
Q 004969          166 DCFSCMPNLICLSMCETRVG  185 (721)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~  185 (721)
                      ..|..+|+|+.|.+.+|++.
T Consensus       278 ~~l~~~~~L~~L~Ls~n~i~  297 (461)
T 1z7x_W          278 RVLRAKESLKELSLAGNELG  297 (461)
T ss_dssp             HHHHHCTTCCEEECTTCCCH
T ss_pred             HHHhhCCCcceEECCCCCCc
Confidence            22444555555555555554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=96.93  E-value=0.00021  Score=82.23  Aligned_cols=129  Identities=17%  Similarity=0.236  Sum_probs=87.4

Q ss_pred             cCCCcceeeEeecCCccccchHHHHHHHHHhcccceEeeccCCchhhH---HHHHhhcCCccceEeecccccccccc--c
Q 004969           68 IGATEIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKD---FIRNLSQRGLMCEVLNLRSSRFRKLN--M  142 (721)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--~  142 (721)
                      ++-+.+..+|+.+..-..+....    +.. -.+||+++|.++.+..-   .+..+    -.=+.|+|++|+|..+.  .
T Consensus        48 l~l~~l~~l~l~~~~l~~lp~~~----~~~-l~~L~~L~L~~n~l~~~~~~~~~~l----~~L~~L~L~~n~l~~~~~~~  118 (597)
T 3oja_B           48 ITLNNQKIVTFKNSTMRKLPAAL----LDS-FRQVELLNLNDLQIEEIDTYAFAYA----HTIQKLYMGFNAIRYLPPHV  118 (597)
T ss_dssp             GGGCCCSEEEESSCEESEECTHH----HHH-CCCCSEEECTTSCCCEECTTTTTTC----TTCCEEECCSSCCCCCCTTT
T ss_pred             ccCCCceEEEeeCCCCCCcCHHH----Hcc-CCCCcEEECCCCCCCCCChHHhcCC----CCCCEEECCCCcCCCCCHHH
Confidence            34456666776554433343322    111 25788888888765431   11111    13467889888888876  3


Q ss_pred             ccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969          143 IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       143 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (721)
                      ++.+++|.+|+|+ .|.|+.++...|..||+|+.|.+.+|++..+-.  .++.+|++|++|.+..|
T Consensus       119 ~~~l~~L~~L~L~-~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L~~N  181 (597)
T 3oja_B          119 FQNVPLLTVLVLE-RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED--DTFQATTSLQNLQLSSN  181 (597)
T ss_dssp             TTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT--TTTTTCTTCCEEECTTS
T ss_pred             HcCCCCCCEEEee-CCCCCCCCHHHhccCCCCCEEEeeCCcCCCCCh--hhhhcCCcCcEEECcCC
Confidence            6788889999998 778888888888999999999999888875521  25778888888876654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=96.93  E-value=0.00013  Score=81.20  Aligned_cols=80  Identities=11%  Similarity=0.140  Sum_probs=61.6

Q ss_pred             cceEeecccccccccc--cccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhh
Q 004969          126 MCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAEL  203 (721)
Q Consensus       126 ~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (721)
                      +=+.|+|++|++..+.  .++.+++|++|+|. .|.|+.+....|..+|+|+.|.|.+|++..+  ...++.+|++|++|
T Consensus       225 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L  301 (477)
T 2id5_A          225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLS-YNPISTIEGSMLHELLRLQEIQLVGGQLAVV--EPYAFRGLNYLRVL  301 (477)
T ss_dssp             CCSEEEEESSCCCSCCHHHHTTCTTCCEEECC-SSCCCEECTTSCTTCTTCCEEECCSSCCSEE--CTTTBTTCTTCCEE
T ss_pred             cccEEECcCCcccccCHHHhcCccccCeeECC-CCcCCccChhhccccccCCEEECCCCccceE--CHHHhcCcccCCEE
Confidence            5567888888887776  46678888888888 6778888888888888888888888888764  22467788888888


Q ss_pred             cccee
Q 004969          204 RFQNW  208 (721)
Q Consensus       204 ~~~~~  208 (721)
                      .+..+
T Consensus       302 ~L~~N  306 (477)
T 2id5_A          302 NVSGN  306 (477)
T ss_dssp             ECCSS
T ss_pred             ECCCC
Confidence            76554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=96.93  E-value=0.00022  Score=84.28  Aligned_cols=76  Identities=22%  Similarity=0.263  Sum_probs=35.3

Q ss_pred             eEeecccccccccc-cccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhccc
Q 004969          128 EVLNLRSSRFRKLN-MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQ  206 (721)
Q Consensus       128 ~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (721)
                      +.|+|++|+|..|. .++.+.+|.+|+|. .|.|+.|+ ..|..|++|+.|.|.+|++..|=   ..+.+|++|++|.+.
T Consensus       227 ~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls-~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~lp---~~~~~l~~L~~L~L~  301 (727)
T 4b8c_D          227 HALDLSNLQIFNISANIFKYDFLTRLYLN-GNSLTELP-AEIKNLSNLRVLDLSHNRLTSLP---AELGSCFQLKYFYFF  301 (727)
T ss_dssp             CEEECTTSCCSCCCGGGGGCCSCSCCBCT-TSCCSCCC-GGGGGGTTCCEEECTTSCCSSCC---SSGGGGTTCSEEECC
T ss_pred             cEEECCCCCCCCCChhhcCCCCCCEEEee-CCcCcccC-hhhhCCCCCCEEeCcCCcCCccC---hhhcCCCCCCEEECC
Confidence            44555555554442 23344555555555 44455444 33445555555555555554331   223444445555444


Q ss_pred             ee
Q 004969          207 NW  208 (721)
Q Consensus       207 ~~  208 (721)
                      .|
T Consensus       302 ~N  303 (727)
T 4b8c_D          302 DN  303 (727)
T ss_dssp             SS
T ss_pred             CC
Confidence            43

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=96.92  E-value=0.00026  Score=67.65  Aligned_cols=76  Identities=16%  Similarity=0.260  Sum_probs=64.0

Q ss_pred             eEeecccccccccccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhccce
Q 004969          128 EVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQN  207 (721)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (721)
                      +.|++++|++..+-- +-+.+|++|+|. .|.|+.+..+-|..|++|+.|.|.+|++..+=.  .++.+|++|++|.+..
T Consensus        12 ~~l~~s~n~l~~ip~-~~~~~l~~L~L~-~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~--~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           12 TTVDCSGKSLASVPT-GIPTTTQVLYLY-DNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA--GVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TEEECTTSCCSSCCS-CCCTTCSEEECC-SSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT--TTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCccCc-cCCCCCcEEEcC-CCcCCccChhhhcCcccCCEEECCCCCcCccCh--hhccCCCCCCEEECCC
Confidence            468999999888752 346899999999 899999999999999999999999999986622  3467899999997654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.89  E-value=0.018  Score=63.37  Aligned_cols=156  Identities=11%  Similarity=0.105  Sum_probs=97.1

Q ss_pred             CeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-CC----cE
Q 004969          500 SVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-SK----NI  574 (721)
Q Consensus       500 ~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-Dg----~I  574 (721)
                      ....|+|.|.+...|+.+...+.|+.+|..++...  .        ..........++++++++.++++.. ++    .+
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~--~--------~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v  207 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS--T--------VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNN  207 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE--E--------EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEE
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE--E--------EecCCCCcceEEEeCCCCEEEEEeCCCCcccceE
Confidence            45678887423445555555588889998774321  1        1112244688999999997777664 22    23


Q ss_pred             EEEECCCCcEE--EEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEE
Q 004969          575 ALYDINSGRRL--QVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYL  652 (721)
Q Consensus       575 rlWDl~s~~~v--~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~L  652 (721)
                      ..++.. +...  ..+.  .......++++|+++.++++-..++.|..||...+.............+..++|+|+|++|
T Consensus       208 ~~~~~~-g~~~~~~~l~--~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~l  284 (430)
T 3tc9_A          208 YILTRE-SGFKVITELT--KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYA  284 (430)
T ss_dssp             EEEEGG-GTSCSEEEEE--ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEE
T ss_pred             EEEeCC-Cceeeeeeec--cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEE
Confidence            334432 3221  2222  2234567889994337777777788999999987643234444343446689999999966


Q ss_pred             EEE-eCCCcEEEEEcCC
Q 004969          653 LGK-GSGTSMFVQSLRG  668 (721)
Q Consensus       653 asg-s~Dg~I~VWDl~g  668 (721)
                      +.+ ...+.|+.++..+
T Consensus       285 yv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          285 YIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             EEEETTTTEEEEEEEET
T ss_pred             EEEECCCCEEEEEeCCc
Confidence            555 4567899888664

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=96.87  E-value=0.00024  Score=75.15  Aligned_cols=78  Identities=18%  Similarity=0.263  Sum_probs=48.2

Q ss_pred             ceEeecccccccccccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhccc
Q 004969          127 CEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQ  206 (721)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (721)
                      =+.|+|+.|++..+.. +-+.+|.+|+|+ .|.|+.+....|..+|+|+.|.+.+|++..+-  ..++.++++|++|.+.
T Consensus       174 L~~L~l~~n~l~~l~~-~~~~~L~~L~l~-~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~  249 (332)
T 2ft3_A          174 LNYLRISEAKLTGIPK-DLPETLNELHLD-HNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE--NGSLSFLPTLRELHLD  249 (332)
T ss_dssp             CSCCBCCSSBCSSCCS-SSCSSCSCCBCC-SSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC--TTGGGGCTTCCEEECC
T ss_pred             cCEEECcCCCCCccCc-cccCCCCEEECC-CCcCCccCHHHhcCCCCCCEEECCCCcCCcCC--hhHhhCCCCCCEEECC
Confidence            3445555555444322 133567777777 66777777777777777777777777776541  1246677777777665


Q ss_pred             ee
Q 004969          207 NW  208 (721)
Q Consensus       207 ~~  208 (721)
                      .|
T Consensus       250 ~N  251 (332)
T 2ft3_A          250 NN  251 (332)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=96.86  E-value=0.00022  Score=81.71  Aligned_cols=77  Identities=21%  Similarity=0.332  Sum_probs=40.6

Q ss_pred             eEeecccccccccc--cccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhcc
Q 004969          128 EVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRF  205 (721)
Q Consensus       128 ~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (721)
                      ++|+|++|+|..+.  .++.+++|++|+|. .|.|+.+..+.|..+++|+.|.+.+|++..+..  .++.+|++|++|.+
T Consensus        59 ~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls-~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L  135 (606)
T 3vq2_A           59 QWLDLSRCEIETIEDKAWHGLHHLSNLILT-GNPIQSFSPGSFSGLTSLENLVAVETKLASLES--FPIGQLITLKKLNV  135 (606)
T ss_dssp             CEEECTTCCCCEECTTTTTTCTTCCEEECT-TCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSS--SCCTTCTTCCEEEC
T ss_pred             cEEeCCCCcccccCHHHhhchhhcCEeECC-CCcccccChhhcCCcccCCEEEccCCccccccc--cccCCCCCCCEEeC
Confidence            44555555555552  34555555555555 445555555555555555555555555544321  12455555555554


Q ss_pred             ce
Q 004969          206 QN  207 (721)
Q Consensus       206 ~~  207 (721)
                      ..
T Consensus       136 ~~  137 (606)
T 3vq2_A          136 AH  137 (606)
T ss_dssp             CS
T ss_pred             CC
Confidence            43

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=96.85  E-value=0.00031  Score=74.05  Aligned_cols=103  Identities=16%  Similarity=0.231  Sum_probs=73.1

Q ss_pred             ccceEeeccCCchhhH---HHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccch
Q 004969          100 QKLRVVDLHDSSFGKD---FIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLIC  176 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  176 (721)
                      .+|+.++|.++.+..-   .+..|    -.=+.|+|++|++..+.. +-+.+|.+|+|. .+.|+.+....|..||+|+.
T Consensus        76 ~~L~~L~L~~n~l~~~~~~~~~~l----~~L~~L~Ls~n~l~~l~~-~~~~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~  149 (330)
T 1xku_A           76 KNLHTLILINNKISKISPGAFAPL----VKLERLYLSKNQLKELPE-KMPKTLQELRVH-ENEITKVRKSVFNGLNQMIV  149 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTC----TTCCEEECCSSCCSBCCS-SCCTTCCEEECC-SSCCCBBCHHHHTTCTTCCE
T ss_pred             CCCCEEECCCCcCCeeCHHHhcCC----CCCCEEECCCCcCCccCh-hhcccccEEECC-CCcccccCHhHhcCCccccE
Confidence            5688888887765421   12221    234678888888876643 245788888888 77888888888888888888


Q ss_pred             hccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969          177 LSMCETRVGNLWTTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (721)
                      |.|.+|++...-....++.++++|++|++..|
T Consensus       150 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n  181 (330)
T 1xku_A          150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADT  181 (330)
T ss_dssp             EECCSSCCCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred             EECCCCcCCccCcChhhccCCCCcCEEECCCC
Confidence            88888888654444567788888888876543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=96.84  E-value=0.052  Score=62.43  Aligned_cols=196  Identities=9%  Similarity=0.035  Sum_probs=120.8

Q ss_pred             CCEEEEEEC-CCeEEEEEC-CCCeEEEEeecCCCCC---------CeEEEEEeeCCCCE----EEEEeCCCeEEEEEcCC
Q 004969          466 SCLMVFGTL-DGEIVVVNH-ENENIVSYIPSFGAMN---------SVLGLCWLKKYPSK----LIAGSDNGSLKLYDIRH  530 (721)
Q Consensus       466 g~~LasGs~-DG~I~IWdl-~tg~~i~~l~~~~H~~---------~V~sl~fsp~d~~~----LaSgs~DGtVrIWDi~~  530 (721)
                      +..+++++. ++.|.-+|. .+|+.+-.+.......         ....++..| .+..    ++.++.|+.+.-+|..+
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p-~~g~~~~rV~v~t~dg~l~AlDa~T  140 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWP-GDGKTPALILKTQLDGNVAALNAET  140 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEEC-CCSSSCCEEEEECTTSEEEEEETTT
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEe-cCCcceeEEEEEcCCCEEEEEECCC
Confidence            456777777 899999999 8999988776422110         012344432 3334    88889999999999999


Q ss_pred             CCCcccccccCcceeEeccCCCeEE-EEEecCCCEEEEEeC------CCcEEEEECCCCcEEEEEccccCC---------
Q 004969          531 MPPSIRGMHYGAGTVTFDEFDQLTS-VHVNSMDELFLASGY------SKNIALYDINSGRRLQVFADMHKE---------  594 (721)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~~~~V~s-v~~sp~~~~lls~g~------Dg~IrlWDl~s~~~v~~l~~~h~~---------  594 (721)
                      ++...........     ....+.+ -.+  .++.+++++.      ++.|+-+|.++|+.+..+......         
T Consensus       141 G~~~W~~~~~~~~-----~~~~~~ssP~v--~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~  213 (599)
T 1w6s_A          141 GETVWKVENSDIK-----VGSTLTIAPYV--VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDF  213 (599)
T ss_dssp             CCEEEEEECCCGG-----GTCBCCSCCEE--ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTT
T ss_pred             CCEEEeecCCCCC-----ccceeecCCEE--ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccc
Confidence            8764332111100     0001111 011  1456666553      799999999999999887631110         


Q ss_pred             ---------------------------Ce-EEEEEcCCCCcEEEEEECC----------------CcEEEEECCCCCcee
Q 004969          595 ---------------------------HI-NVVKFSNHSPSIFATSSFD----------------QDVKLWDLRQKPIQP  630 (721)
Q Consensus       595 ---------------------------~V-~sI~fsPdg~~lLaSgs~D----------------gtIrIWDlrs~~~~~  630 (721)
                                                 .+ ..+++.+.. .++..+..+                +.|.-+|.++++..-
T Consensus       214 ~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~-g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W  292 (599)
T 1w6s_A          214 NIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGT-NLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKF  292 (599)
T ss_dssp             TTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEE
T ss_pred             ccccccccccccccccCCCcceecCCCccccceeEeCCC-CEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceee
Confidence                                       00 134566666 466666654                379999999997765


Q ss_pred             EEEecCCCC--------eEEEEEe-cCC---CEEEEEeCCCcEEEEEcC-CCc
Q 004969          631 CYTASSSKG--------NVMVCFS-PDD---HYLLGKGSGTSMFVQSLR-GDP  670 (721)
Q Consensus       631 ~~~~~~~~~--------~vsl~fS-pdg---~~Lasgs~Dg~I~VWDl~-g~~  670 (721)
                      .+....|..        ++-+... .+|   ..++.++.+|.+++.|.+ |+.
T Consensus       293 ~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  345 (599)
T 1w6s_A          293 GYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGAL  345 (599)
T ss_dssp             EEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred             EeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCE
Confidence            565554422        2222332 577   567778899999999976 544

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=96.84  E-value=0.00025  Score=78.94  Aligned_cols=94  Identities=18%  Similarity=0.196  Sum_probs=69.3

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCC-ccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhc
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRG-LMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLS  178 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (721)
                      .+||.++|+++.+..-     ...+ -.=+.|+|++|+|..+. ++.+++|++|+|+ .|.|+.++   |..+|+|+.|.
T Consensus        64 ~~L~~L~Ls~n~l~~~-----~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~-~N~l~~l~---~~~l~~L~~L~  133 (457)
T 3bz5_A           64 TGLTKLICTSNNITTL-----DLSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCD-TNKLTKLD---VSQNPLLTYLN  133 (457)
T ss_dssp             TTCSEEECCSSCCSCC-----CCTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECC-SSCCSCCC---CTTCTTCCEEE
T ss_pred             CCCCEEEccCCcCCeE-----ccccCCCCCEEECcCCCCceee-cCCCCcCCEEECC-CCcCCeec---CCCCCcCCEEE
Confidence            5788888888766542     1112 23467888888888886 6788888888888 66788874   78888888888


Q ss_pred             cccccchhhhHHHHHhhcCCcchhhcccee
Q 004969          179 MCETRVGNLWTTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (721)
                      +.+|++..+     .+.++++|++|.+..|
T Consensus       134 l~~N~l~~l-----~l~~l~~L~~L~l~~n  158 (457)
T 3bz5_A          134 CARNTLTEI-----DVSHNTQLTELDCHLN  158 (457)
T ss_dssp             CTTSCCSCC-----CCTTCTTCCEEECTTC
T ss_pred             CCCCcccee-----ccccCCcCCEEECCCC
Confidence            888888765     3777888888877665

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.83  E-value=0.11  Score=58.33  Aligned_cols=209  Identities=8%  Similarity=0.041  Sum_probs=120.8

Q ss_pred             CeEEEEEeCC-CCCEEEEEECCCeEEEEECCCCeEEEEeecC-CCCCCeEEEEE-------eeCCCCEEEEEeCCC----
Q 004969          455 RPRQFEYHPS-ISCLMVFGTLDGEIVVVNHENENIVSYIPSF-GAMNSVLGLCW-------LKKYPSKLIAGSDNG----  521 (721)
Q Consensus       455 ~V~~lafsP~-dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~-~H~~~V~sl~f-------sp~d~~~LaSgs~DG----  521 (721)
                      .+..|+|+|. ++.++++-...+.|++.|.+++......... +.......++|       . ++++.|+.+...+    
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d-~~G~~lyvad~~~~~~~  218 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYA-DEAEYMIVAIDYDGKGD  218 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTB-CTTCEEEEEECCCTTGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccC-CCCCEEEEEeCCCCCcc
Confidence            4788999993 4566666666678999999987776555421 12346899999       8 6777666665543    


Q ss_pred             ---eEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECC-------CCcE------
Q 004969          522 ---SLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDIN-------SGRR------  584 (721)
Q Consensus       522 ---tVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~-------s~~~------  584 (721)
                         .|.+.+...... +...........+.   ....++++|.++.|+++. .++.|..+|+.       ++..      
T Consensus       219 ~~~~V~~i~r~~~G~-~~~~~~~~~v~~~~---~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~  294 (496)
T 3kya_A          219 ESPSVYIIKRNADGT-FDDRSDIQLIAAYK---QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK  294 (496)
T ss_dssp             GEEEEEEEECCTTSC-CSTTSCEEEEEEES---CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred             cCceEEEEecCCCCc-eeecccceeeccCC---CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence               255555333111 11000000111222   346778899777766665 57889999997       5543      


Q ss_pred             -----EEE-EccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC--CCCce--eEEEec-CC-------------CCe
Q 004969          585 -----LQV-FADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLR--QKPIQ--PCYTAS-SS-------------KGN  640 (721)
Q Consensus       585 -----v~~-l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlr--s~~~~--~~~~~~-~~-------------~~~  640 (721)
                           ... +........+.++|+|+|..++++-+..+.|+.+|..  .+...  .++... +.             ..+
T Consensus       295 ~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P  374 (496)
T 3kya_A          295 NNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNP  374 (496)
T ss_dssp             GCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSE
T ss_pred             ccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCC
Confidence                 112 2211345578999999993355665677889986653  32110  111111 11             123


Q ss_pred             E-EEEEe-------cCCCEEEEEeCCCcEEEEEcCC
Q 004969          641 V-MVCFS-------PDDHYLLGKGSGTSMFVQSLRG  668 (721)
Q Consensus       641 v-sl~fS-------pdg~~Lasgs~Dg~I~VWDl~g  668 (721)
                      . .++..       ++|.++++=...+.|+.++..|
T Consensus       375 ~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G  410 (496)
T 3kya_A          375 CQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEG  410 (496)
T ss_dssp             EEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTC
T ss_pred             eEEEEEccccccccCCCeEEEEECCCCEEEEEeCCC
Confidence            3 34444       4566666666677888887554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=96.83  E-value=0.00016  Score=81.18  Aligned_cols=100  Identities=16%  Similarity=0.173  Sum_probs=72.8

Q ss_pred             ccceEeeccCCchhh---HHHHHhhcCCccceEeeccccccccc--ccccccceeeEEeccccccccccccccccccccc
Q 004969          100 QKLRVVDLHDSSFGK---DFIRNLSQRGLMCEVLNLRSSRFRKL--NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNL  174 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  174 (721)
                      .+|+.++|+++.+..   +.+..|    -.=++|+|++|+|..+  ..++.+++|++|+|. .|.|+.++..   .+++|
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l----~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~lp~~---~l~~L   92 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSL----SKLRILIISHNRIQYLDISVFKFNQELEYLDLS-HNKLVKISCH---PTVNL   92 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTC----TTCCEEECCSSCCCEEEGGGGTTCTTCCEEECC-SSCCCEEECC---CCCCC
T ss_pred             ccccEEECCCCcccccChhhcccc----ccccEEecCCCccCCcChHHhhcccCCCEEecC-CCceeecCcc---ccCCc
Confidence            788888888876643   233333    2356788888888887  457788888888888 6788888776   78888


Q ss_pred             chhccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969          175 ICLSMCETRVGNLWTTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (721)
                      +.|.+.+|++..+- --.++.+|++|++|.+..+
T Consensus        93 ~~L~L~~N~l~~~~-~p~~~~~l~~L~~L~L~~n  125 (520)
T 2z7x_B           93 KHLDLSFNAFDALP-ICKEFGNMSQLKFLGLSTT  125 (520)
T ss_dssp             SEEECCSSCCSSCC-CCGGGGGCTTCCEEEEEES
T ss_pred             cEEeccCCcccccc-chhhhccCCcceEEEecCc
Confidence            88888888876431 1146778888888877663

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.82  E-value=0.34  Score=57.52  Aligned_cols=187  Identities=10%  Similarity=0.019  Sum_probs=116.4

Q ss_pred             CCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCe
Q 004969          474 LDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQL  553 (721)
Q Consensus       474 ~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V  553 (721)
                      ....|+..++..+.....+.   ....+.+|+|.+.++.++++-...+.|+.+++......     .....+........
T Consensus       402 n~~~Ir~i~l~~~~~~~l~~---~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~-----~~~~~vi~~~l~~P  473 (791)
T 3m0c_C          402 NRHEVRKMTLDRSEYTSLIP---NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-----SSYDTVISRDIQAP  473 (791)
T ss_dssp             CBSSEEEECTTSCCCEEEEC---SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-------------CEEEECSSCSCC
T ss_pred             cccceeEeeccCCcceeeec---CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCC-----cceeEEEecCCCCc
Confidence            34568888887665544443   34568899998545556666667788999998763210     00011111122345


Q ss_pred             EEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECC-CcEEEEECCCCCceeE
Q 004969          554 TSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD-QDVKLWDLRQKPIQPC  631 (721)
Q Consensus       554 ~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~D-gtIrIWDlrs~~~~~~  631 (721)
                      ..|++.+.++.|+.+. ..+.|.+.++........+.. .......|++.|.++.++++-... +.|...++...... +
T Consensus       474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~-~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~-~  551 (791)
T 3m0c_C          474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE-NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-S  551 (791)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC-TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE-E
T ss_pred             ceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeC-CCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE-E
Confidence            7888887787777766 468899999985443333332 445688999999864566655443 78999998765332 2


Q ss_pred             EEecCCCCeEEEEEecCCCEEEEEe-CCCcEEEEEcCCCc
Q 004969          632 YTASSSKGNVMVCFSPDDHYLLGKG-SGTSMFVQSLRGDP  670 (721)
Q Consensus       632 ~~~~~~~~~vsl~fSpdg~~Lasgs-~Dg~I~VWDl~g~~  670 (721)
                      .....-..+..|++++.+..|+.+. ..+.|...++.|..
T Consensus       552 lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~  591 (791)
T 3m0c_C          552 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  591 (791)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             EEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc
Confidence            2222234566899998777777664 45678888888654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=96.82  E-value=0.00048  Score=76.70  Aligned_cols=96  Identities=21%  Similarity=0.219  Sum_probs=77.8

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhcc
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM  179 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (721)
                      .+||.+||.++.+..-  ..+. .=-.=+.|+|+.|+|..+. ++.+.+|++|+|. .|.|+.++   |..||+|+.|.+
T Consensus        42 ~~L~~L~Ls~n~l~~~--~~l~-~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls-~N~l~~~~---~~~l~~L~~L~L  113 (457)
T 3bz5_A           42 ATLTSLDCHNSSITDM--TGIE-KLTGLTKLICTSNNITTLD-LSQNTNLTYLACD-SNKLTNLD---VTPLTKLTYLNC  113 (457)
T ss_dssp             TTCCEEECCSSCCCCC--TTGG-GCTTCSEEECCSSCCSCCC-CTTCTTCSEEECC-SSCCSCCC---CTTCTTCCEEEC
T ss_pred             CCCCEEEccCCCcccC--hhhc-ccCCCCEEEccCCcCCeEc-cccCCCCCEEECc-CCCCceee---cCCCCcCCEEEC
Confidence            5789999999766531  1111 1123467999999999997 8899999999999 78899984   899999999999


Q ss_pred             ccccchhhhHHHHHhhcCCcchhhcccee
Q 004969          180 CETRVGNLWTTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (721)
                      .+|++..+.     +.++++|++|.+..|
T Consensus       114 ~~N~l~~l~-----~~~l~~L~~L~l~~N  137 (457)
T 3bz5_A          114 DTNKLTKLD-----VSQNPLLTYLNCARN  137 (457)
T ss_dssp             CSSCCSCCC-----CTTCTTCCEEECTTS
T ss_pred             CCCcCCeec-----CCCCCcCCEEECCCC
Confidence            999999872     889999999987654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=96.81  E-value=0.00028  Score=79.94  Aligned_cols=105  Identities=17%  Similarity=0.170  Sum_probs=58.7

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccc--cccccceeeEEecccccccccccccccccccccchh
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL  177 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  177 (721)
                      .+||++||.++.+..-. .+.+..=-.=+.|+|++|++..+.  .++.+.+|++|+|. .+.|+.+....|..+++|+.|
T Consensus        52 ~~L~~L~Ls~n~i~~i~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~l~~~~~~~l~~L~~L  129 (570)
T 2z63_A           52 PELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV-ETNLASLENFPIGHLKTLKEL  129 (570)
T ss_dssp             SSCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT-TSCCCCSTTCSCTTCTTCCEE
T ss_pred             CCceEEECCCCcCCccC-cccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc-ccccccCCCccccccccccEE
Confidence            35667777665433210 011111113355677777666663  45666677777776 556666666667777777777


Q ss_pred             ccccccchhhhHHHHHhhcCCcchhhccce
Q 004969          178 SMCETRVGNLWTTIAALSKLPSLAELRFQN  207 (721)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (721)
                      .+.+|++..+ .--+++.+|++|++|.+..
T Consensus       130 ~L~~n~l~~~-~lp~~~~~l~~L~~L~l~~  158 (570)
T 2z63_A          130 NVAHNLIQSF-KLPEYFSNLTNLEHLDLSS  158 (570)
T ss_dssp             ECCSSCCCCC-CCCGGGGGCTTCCEEECTT
T ss_pred             ecCCCcccee-cChhhhcccCCCCEEeCcC
Confidence            7777666531 0013456666666666543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=96.80  E-value=0.00052  Score=76.23  Aligned_cols=99  Identities=9%  Similarity=0.244  Sum_probs=78.8

Q ss_pred             cceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhccc
Q 004969          101 KLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMC  180 (721)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (721)
                      +||.++|+++.+..  +..+. .=-.-++|+|++|++..+.-++.+.+|++|+|. .+.++.+..  |..||+|+.|.+.
T Consensus        47 ~l~~L~l~~~~i~~--l~~~~-~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~-~n~l~~~~~--~~~l~~L~~L~L~  120 (466)
T 1o6v_A           47 QVTTLQADRLGIKS--IDGVE-YLNNLTQINFSNNQLTDITPLKNLTKLVDILMN-NNQIADITP--LANLTNLTGLTLF  120 (466)
T ss_dssp             TCCEEECCSSCCCC--CTTGG-GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECC-SSCCCCCGG--GTTCTTCCEEECC
T ss_pred             cccEEecCCCCCcc--Ccchh-hhcCCCEEECCCCccCCchhhhccccCCEEECC-CCccccChh--hcCCCCCCEEECC
Confidence            57777777754321  11111 112347899999999999889999999999999 788999876  9999999999999


Q ss_pred             cccchhhhHHHHHhhcCCcchhhccceee
Q 004969          181 ETRVGNLWTTIAALSKLPSLAELRFQNWL  209 (721)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (721)
                      +|++..+    .++.+|++|++|.+..|-
T Consensus       121 ~n~l~~~----~~~~~l~~L~~L~l~~n~  145 (466)
T 1o6v_A          121 NNQITDI----DPLKNLTNLNRLELSSNT  145 (466)
T ss_dssp             SSCCCCC----GGGTTCTTCSEEEEEEEE
T ss_pred             CCCCCCC----hHHcCCCCCCEEECCCCc
Confidence            9999877    569999999999988764

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.79  E-value=0.0017  Score=76.27  Aligned_cols=200  Identities=8%  Similarity=0.008  Sum_probs=114.8

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCC----CeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHEN----ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH  530 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~t----g~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~  530 (721)
                      .+..++|++..+.++++-...+.|+.+++.+    ......+.  .......+|++.+..+.++++-...+.|.++++.+
T Consensus       407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~--~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg  484 (699)
T 1n7d_A          407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  484 (699)
T ss_dssp             TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCC--SCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSS
T ss_pred             ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEe--CCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCC
Confidence            4678999994444444445568899999875    12211111  11123445666534555556656678899999876


Q ss_pred             CCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC--CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcE
Q 004969          531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY--SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSI  608 (721)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~--Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~l  608 (721)
                      .......         .........++++|.++.|+.+..  .+.|..+++.. .....+....-...+.|+|+|++.++
T Consensus       485 ~~~~~l~---------~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG-~~~~~l~~~~l~~PnGlavd~~~~~L  554 (699)
T 1n7d_A          485 VKRKTLF---------REQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRL  554 (699)
T ss_dssp             CCEEEEC---------CCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS-CCCCEESCSSCSSCCCEEECTTTCCE
T ss_pred             CceEEEE---------eCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC-CCeeEEEeCCCCCccEEEEeccCCEE
Confidence            4321100         011123467788887777666653  26788887763 32233321123456789999987677


Q ss_pred             EEEEECCCcEEEEECCCCCceeEEEecC-CCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          609 FATSSFDQDVKLWDLRQKPIQPCYTASS-SKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       609 LaSgs~DgtIrIWDlrs~~~~~~~~~~~-~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                      +++-+..+.|..+|+.......+..... ...+..+++..+ ..+++....+.|..++..
T Consensus       555 Y~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~  613 (699)
T 1n7d_A          555 YWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRL  613 (699)
T ss_dssp             EEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETT
T ss_pred             EEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEcc
Confidence            7777778899999997543322222111 122335666544 333444556789888864

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.78  E-value=0.011  Score=68.66  Aligned_cols=227  Identities=10%  Similarity=0.039  Sum_probs=123.0

Q ss_pred             EEEEeCCCCCEEEEEECCC-----------eEEEEECCCCeEE--EEeecCCCCCCeEEEEEeeCCCCEEEEEeC-CCeE
Q 004969          458 QFEYHPSISCLMVFGTLDG-----------EIVVVNHENENIV--SYIPSFGAMNSVLGLCWLKKYPSKLIAGSD-NGSL  523 (721)
Q Consensus       458 ~lafsP~dg~~LasGs~DG-----------~I~IWdl~tg~~i--~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~-DGtV  523 (721)
                      ..++.|.++++++.|+.++           .+.+||..+++..  ..+.. .+.....++++. .++..++.|+. ++.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~-~~~~~~~~~~~~-~~g~lyv~GG~~~~~v  267 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVT-KHDMFCPGISMD-GNGQIVVTGGNDAKKT  267 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEEC-SCCCSSCEEEEC-TTSCEEEECSSSTTCE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCC-CCCCccccccCC-CCCCEEEeCCCCCCce
Confidence            4566665778888887643           6889999887642  22221 223334455665 67888888884 5689


Q ss_pred             EEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-CC-----CcEEEEECCCCcEEEEE----ccccC
Q 004969          524 KLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YS-----KNIALYDINSGRRLQVF----ADMHK  593 (721)
Q Consensus       524 rIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~D-----g~IrlWDl~s~~~v~~l----~~~h~  593 (721)
                      .+||..+....  ...      .+.....-.+++..+++..++.|| .+     ..+.+||..+++....-    .....
T Consensus       268 ~~yd~~t~~W~--~~~------~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~  339 (656)
T 1k3i_A          268 SLYDSSSDSWI--PGP------DMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLT  339 (656)
T ss_dssp             EEEEGGGTEEE--ECC------CCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCC
T ss_pred             EEecCcCCcee--ECC------CCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccc
Confidence            99998875321  110      011111113444546788888888 34     57999999887644320    00000


Q ss_pred             CCeEEEEEcCCCCcEEEEEECC---------CcEEEEECCCCCceeEEEecCC--------CCeEEEEEec-CCCEEEEE
Q 004969          594 EHINVVKFSNHSPSIFATSSFD---------QDVKLWDLRQKPIQPCYTASSS--------KGNVMVCFSP-DDHYLLGK  655 (721)
Q Consensus       594 ~~V~sI~fsPdg~~lLaSgs~D---------gtIrIWDlrs~~~~~~~~~~~~--------~~~vsl~fSp-dg~~Lasg  655 (721)
                      ..- ...+..++ .+++.|+.+         ..+..||..+............        ....++.|.. +++.++.|
T Consensus       340 ~~~-~~~~~~~~-~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~G  417 (656)
T 1k3i_A          340 ADK-QGLYRSDN-HAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFG  417 (656)
T ss_dssp             CCT-TGGGTTTC-SCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEEC
T ss_pred             ccc-cceeecCC-ceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEe
Confidence            000 01122333 455555444         3578899887653322111110        1122455544 77788888


Q ss_pred             eCCC-----------cEEEEEcCCCccc-----cc--ccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          656 GSGT-----------SMFVQSLRGDPFR-----DF--NMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       656 s~Dg-----------~I~VWDl~g~~l~-----~~--~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      +.++           .+.+||.....-.     ..  ...-..+...|++       .+++.|+..
T Consensus       418 G~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g-------~i~v~GG~~  476 (656)
T 1k3i_A          418 GSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDG-------STFITGGQR  476 (656)
T ss_dssp             CBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTS-------CEEEECCBS
T ss_pred             CCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCC-------CEEEECCcc
Confidence            7532           5677776532211     11  1112234556777       788888754

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=96.78  E-value=0.071  Score=62.90  Aligned_cols=156  Identities=9%  Similarity=0.027  Sum_probs=90.1

Q ss_pred             CeEEEEEeeCCCCEEEEEe-CC----CeEEEEEcCCC-CCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC--
Q 004969          500 SVLGLCWLKKYPSKLIAGS-DN----GSLKLYDIRHM-PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS--  571 (721)
Q Consensus       500 ~V~sl~fsp~d~~~LaSgs-~D----GtVrIWDi~~~-~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D--  571 (721)
                      .+...+|+|+++++|+-+. .+    .+|+++|+.++ +....       ...    ....++.|+|++..|+.+..|  
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-------~~~----~~~~~~~WspDg~~l~y~~~d~~  243 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-------KVS----GTNGEIVWGPDHTSLFYVTKDET  243 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-------CEE----EECSCCEECSSTTEEEEEEECTT
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-------ccc----CceeeEEEecCCCEEEEEEECCC
Confidence            6778899735777666443 33    35999999987 52100       010    013467899999888887754  


Q ss_pred             ---CcEEEEECCCCc--EEEEEccccCCCeEEEEEcCCCCcEEEEEEC--CCcEEEEECCCCCcee--EEEecCCCCe-E
Q 004969          572 ---KNIALYDINSGR--RLQVFADMHKEHINVVKFSNHSPSIFATSSF--DQDVKLWDLRQKPIQP--CYTASSSKGN-V  641 (721)
Q Consensus       572 ---g~IrlWDl~s~~--~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~--DgtIrIWDlrs~~~~~--~~~~~~~~~~-v  641 (721)
                         ..|.++++.++.  ....+..........+.|+|+|..++++...  ...|.++|+.++....  .......... .
T Consensus       244 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~  323 (751)
T 2xe4_A          244 LRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRY  323 (751)
T ss_dssp             CCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCE
T ss_pred             CCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceE
Confidence               358888988764  2333332233456788999999444444432  3458888988752222  1112222222 2


Q ss_pred             EEEEecCCCEEE-EEeCC----CcEEEEEcC
Q 004969          642 MVCFSPDDHYLL-GKGSG----TSMFVQSLR  667 (721)
Q Consensus       642 sl~fSpdg~~La-sgs~D----g~I~VWDl~  667 (721)
                      ++.|+. |..|+ .+..+    ..|..+++.
T Consensus       324 s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~  353 (751)
T 2xe4_A          324 DVQMHG-TSHLVILTNEGGAVNHKLLIAPRG  353 (751)
T ss_dssp             EEEEET-TTEEEEEECTTTCTTCEEEEEETT
T ss_pred             EEeeee-CCEEEEEeCCCCCCCcEEEEEcCC
Confidence            444443 55544 44433    266777775

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=96.77  E-value=0.00032  Score=74.37  Aligned_cols=105  Identities=15%  Similarity=0.231  Sum_probs=72.9

Q ss_pred             ccceEeeccCCchhhHHHHHhh--------cCCccceEeeccccccccc-ccccccceeeEEeccccccccccccccccc
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLS--------QRGLMCEVLNLRSSRFRKL-NMIGEFKRIHTLNLDYSTSLTSFKEDCFSC  170 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  170 (721)
                      .+|+.++|.++.+-...-..+.        +.=-.-+.|+|++|+|..+ ..++.+++|++|+|. .|.++.+... |..
T Consensus       150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~-~N~l~~l~~~-l~~  227 (328)
T 4fcg_A          150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIR-NSPLSALGPA-IHH  227 (328)
T ss_dssp             TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEE-SSCCCCCCGG-GGG
T ss_pred             cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEcc-CCCCCcCchh-hcc
Confidence            5789999987433222211111        1122457789998888866 346788889999998 7788888774 888


Q ss_pred             ccccchhccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969          171 MPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (721)
                      ||+|+.|.+.+|++....  -.++.++++|++|.+..|
T Consensus       228 l~~L~~L~Ls~n~~~~~~--p~~~~~l~~L~~L~L~~n  263 (328)
T 4fcg_A          228 LPKLEELDLRGCTALRNY--PPIFGGRAPLKRLILKDC  263 (328)
T ss_dssp             CTTCCEEECTTCTTCCBC--CCCTTCCCCCCEEECTTC
T ss_pred             CCCCCEEECcCCcchhhh--HHHhcCCCCCCEEECCCC
Confidence            899999999887765432  235778888888888765

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.69  E-value=0.43  Score=56.08  Aligned_cols=201  Identities=11%  Similarity=0.022  Sum_probs=118.0

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|.++...+ ++.+. .|+.++-+..++..+++.............|.++... .++ .|..|+. +-|..||..++...
T Consensus       408 ~v~~i~~d~-~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d-~~g-~lwigt~-~Gl~~~~~~~~~~~  482 (781)
T 3v9f_A          408 SVLCSLKDS-EGNLW-FGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYED-KNK-KIWIGTH-AGVFVIDLASKKVI  482 (781)
T ss_dssp             BEEEEEECT-TSCEE-EEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEEC-TTS-EEEEEET-TEEEEEESSSSSCC
T ss_pred             ceEEEEECC-CCCEE-EEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEEC-CCC-CEEEEEC-CceEEEeCCCCeEE
Confidence            588888887 66654 4777777999998877654322111134678888764 344 4555555 56888998765431


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcc---ccCCCeEEEEEcCCCCcEEEE
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD---MHKEHINVVKFSNHSPSIFAT  611 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~---~h~~~V~sI~fsPdg~~lLaS  611 (721)
                      .........    .....|.++...+++...+ ++.++-+..||..+++.. .+..   .....|.++...++| .+.+ 
T Consensus       483 ~~~~~~~~~----~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g-~lWi-  554 (781)
T 3v9f_A          483 HHYDTSNSQ----LLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKG-QMWL-  554 (781)
T ss_dssp             EEECTTTSS----CSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTS-CEEE-
T ss_pred             ecccCcccc----cccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCC-CEEE-
Confidence            110000000    0124588888877666554 554444778998766543 3331   124578999998888 4444 


Q ss_pred             EECCCcEEEEECCCCCceeEEEecCC-CCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCc
Q 004969          612 SSFDQDVKLWDLRQKPIQPCYTASSS-KGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDP  670 (721)
Q Consensus       612 gs~DgtIrIWDlrs~~~~~~~~~~~~-~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~  670 (721)
                      |+.+|.|..||..+++........+- ...+ ++..+++|.+.+++ .+ .|..++.....
T Consensus       555 ~T~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t-~~-Gl~~~~~~~~~  613 (781)
T 3v9f_A          555 ATGEGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWAST-NT-GISCYITSKKC  613 (781)
T ss_dssp             EETTEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEEC-SS-CEEEEETTTTE
T ss_pred             EECCCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEEc-CC-ceEEEECCCCc
Confidence            44467658899887654322111111 1123 78888888877754 34 46677766443

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.69  E-value=0.33  Score=51.61  Aligned_cols=230  Identities=10%  Similarity=0.093  Sum_probs=124.0

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEE--EEeec-CCCCCCeEEEEEeeCC---CCEEEEE-eCC-----Ce
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIV--SYIPS-FGAMNSVLGLCWLKKY---PSKLIAG-SDN-----GS  522 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i--~~l~~-~~H~~~V~sl~fsp~d---~~~LaSg-s~D-----Gt  522 (721)
                      .++.++|.| ++.++++ ..+|.|++++  +++..  ..+.. ........+|+|+ ++   +..|+.+ ...     +.
T Consensus        32 ~P~~ia~~p-dG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~-pdf~~~g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           32 VPWALAFLP-DGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALH-PRFPQEPYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             CEEEEEECT-TSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEEC-TTTTTSCEEEEEEEECTTSSEEE
T ss_pred             CceEEEEcC-CCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEEC-CCCCCCCEEEEEEecCCCCCccE
Confidence            488999999 8885554 5679999998  45432  22211 1123568899998 44   3444443 332     67


Q ss_pred             EEEEEcCCCCCcccccccCcceeE-ec----cCCCeEEEEEecCCCEEEEEeCC-------------CcEEEEECCCC--
Q 004969          523 LKLYDIRHMPPSIRGMHYGAGTVT-FD----EFDQLTSVHVNSMDELFLASGYS-------------KNIALYDINSG--  582 (721)
Q Consensus       523 VrIWDi~~~~~~~~~~~~~~~~~~-~~----~~~~V~sv~~sp~~~~lls~g~D-------------g~IrlWDl~s~--  582 (721)
                      |..|+...+..  .   ....... +.    .......++|.|++..+++.+..             |.|.-+|....  
T Consensus       107 v~r~~~~~~~~--~---~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p  181 (352)
T 2ism_A          107 VVRLRHLGERG--V---LDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPA  181 (352)
T ss_dssp             EEEEEECSSCE--E---EEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBC
T ss_pred             EEEEEeCCCCc--C---ceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCC
Confidence            77788764321  0   0000111 11    01123678999988766665431             45666665420  


Q ss_pred             ----------cEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcE------EEEECCCCC----------------cee
Q 004969          583 ----------RRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDV------KLWDLRQKP----------------IQP  630 (721)
Q Consensus       583 ----------~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtI------rIWDlrs~~----------------~~~  630 (721)
                                .....+..++ .....++|+|+++.++++-.....+      +|.-+..+.                ..+
T Consensus       182 ~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p  260 (352)
T 2ism_A          182 PGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDP  260 (352)
T ss_dssp             TTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCC
T ss_pred             CCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCC
Confidence                      0111111113 2356789999433666654433331      233322221                123


Q ss_pred             EEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCc-------cccc---ccCeEEEEECCCCCcccccccEEEEe
Q 004969          631 CYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDP-------FRDF---NMSILAAYTRPSSKSEIVKVNLLAST  700 (721)
Q Consensus       631 ~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~-------l~~~---~~~V~~v~fsP~~~~~~v~v~lLASg  700 (721)
                      ...+..+..+..++| .+|..+++.-..+.|...++.+..       ...+   ...+..+++.|++       .++++.
T Consensus       261 ~~~~~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG-------~lyv~~  332 (352)
T 2ism_A          261 LYFWPQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDG-------ALYVTT  332 (352)
T ss_dssp             SEECTTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTS-------CEEEEE
T ss_pred             eEecCCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCC-------cEEEEE
Confidence            445555555667777 467776666666777777665221       1111   2467889999999       777776


Q ss_pred             cCC
Q 004969          701 DHC  703 (721)
Q Consensus       701 s~~  703 (721)
                      ...
T Consensus       333 ~~~  335 (352)
T 2ism_A          333 SNR  335 (352)
T ss_dssp             CST
T ss_pred             eCC
Confidence            543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=96.69  E-value=0.00045  Score=72.83  Aligned_cols=105  Identities=17%  Similarity=0.229  Sum_probs=59.6

Q ss_pred             ccceEeeccCCchhhH-HHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhc
Q 004969          100 QKLRVVDLHDSSFGKD-FIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLS  178 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (721)
                      .+|+.++|.++.+... .....+..=-.=+.|+|++|++..+.. +.+.+|++|+|+ .+.|+.+....|..||+|+.|.
T Consensus       145 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~  222 (330)
T 1xku_A          145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ-GLPPSLTELHLD-GNKITKVDAASLKGLNNLAKLG  222 (330)
T ss_dssp             TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS-SCCTTCSEEECT-TSCCCEECTGGGTTCTTCCEEE
T ss_pred             ccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc-cccccCCEEECC-CCcCCccCHHHhcCCCCCCEEE
Confidence            4566666666655321 000111111133567777777666542 234667777777 5567776666777777777777


Q ss_pred             cccccchhhhHHHHHhhcCCcchhhcccee
Q 004969          179 MCETRVGNLWTTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (721)
                      +.+|++..+-  ..++.++++|++|.+..|
T Consensus       223 Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N  250 (330)
T 1xku_A          223 LSFNSISAVD--NGSLANTPHLRELHLNNN  250 (330)
T ss_dssp             CCSSCCCEEC--TTTGGGSTTCCEEECCSS
T ss_pred             CCCCcCceeC--hhhccCCCCCCEEECCCC
Confidence            7777666431  124666677777766655

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=96.69  E-value=0.00058  Score=78.50  Aligned_cols=102  Identities=18%  Similarity=0.228  Sum_probs=80.9

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeeccccccccccc--ccccceeeEEecccccccccccccccccccccchh
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL  177 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  177 (721)
                      .+|+.++|.++.+..-- ...+..=-.=+.|+|++|+|..+.-  ++.+.+|++|+|. .|.|+.+..+.|..||+|+.|
T Consensus        99 ~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L  176 (597)
T 3oja_B           99 HTIQKLYMGFNAIRYLP-PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS-NNNLERIEDDTFQATTSLQNL  176 (597)
T ss_dssp             TTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCBCCTTTTTTCTTCCEE
T ss_pred             CCCCEEECCCCcCCCCC-HHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEee-CCcCCCCChhhhhcCCcCcEE
Confidence            58999999998765411 0111111235789999999998864  6889999999999 789999999999999999999


Q ss_pred             ccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969          178 SMCETRVGNLWTTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (721)
                      .|.+|++..+     .+..+++|..|.+..+
T Consensus       177 ~L~~N~l~~~-----~~~~l~~L~~L~l~~n  202 (597)
T 3oja_B          177 QLSSNRLTHV-----DLSLIPSLFHANVSYN  202 (597)
T ss_dssp             ECTTSCCSBC-----CGGGCTTCSEEECCSS
T ss_pred             ECcCCCCCCc-----ChhhhhhhhhhhcccC
Confidence            9999999876     4778888988877654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=96.68  E-value=0.0018  Score=68.05  Aligned_cols=134  Identities=17%  Similarity=0.198  Sum_probs=92.1

Q ss_pred             CCcceeeEeecCCcc-ccchHHHHHHHHHhcccceEeeccCC-chhhHHHHHhhcCCc-cceEeecccccc----ccc-c
Q 004969           70 ATEIEAVDVRSGTSC-MLTGEFALSLMHAIDQKLRVVDLHDS-SFGKDFIRNLSQRGL-MCEVLNLRSSRF----RKL-N  141 (721)
Q Consensus        70 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~-~  141 (721)
                      -..++.+|+.   .| .+.++-.-.++... .+|+.++|.++ .+....+..+...=- .=+.|+|+.|++    ..+ .
T Consensus       141 ~~~L~~L~L~---~~~~l~~~~l~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~  216 (336)
T 2ast_B          141 NSNLVRLNLS---GCSGFSEFALQTLLSSC-SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST  216 (336)
T ss_dssp             CTTCSEEECT---TCBSCCHHHHHHHHHHC-TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH
T ss_pred             CCCCCEEECC---CCCCCCHHHHHHHHhcC-CCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH
Confidence            3556666663   33 46655444445443 57999999988 777655555444433 567799998853    222 3


Q ss_pred             cccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969          142 MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       142 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (721)
                      .++.+++|++|+|.+|..|+.-.-..|..+|+|+.|.+.+|. .-....+.+|.++|+|++|++..|
T Consensus       217 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          217 LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY-DIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT-TCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC-CCCHHHHHHHhcCCCCCEEeccCc
Confidence            556788999999996655776555678888999999999885 112334467888999999998877

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=96.68  E-value=0.00063  Score=76.35  Aligned_cols=56  Identities=20%  Similarity=0.327  Sum_probs=26.0

Q ss_pred             ceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhccc
Q 004969          147 KRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQ  206 (721)
Q Consensus       147 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (721)
                      .+|++|+|+ .|.|+.+++..| .||+|+.|.|.+|++..+=..  ++.++++|++|.+.
T Consensus       421 ~~L~~L~Ls-~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~--~~~~l~~L~~L~l~  476 (520)
T 2z7x_B          421 PRIKVLDLH-SNKIKSIPKQVV-KLEALQELNVASNQLKSVPDG--IFDRLTSLQKIWLH  476 (520)
T ss_dssp             TTCCEEECC-SSCCCCCCGGGG-GCTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECC
T ss_pred             ccCCEEECC-CCcccccchhhh-cCCCCCEEECCCCcCCccCHH--HhccCCcccEEECc
Confidence            344555555 444555544444 455555555555555433111  24445555555443

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.67  E-value=0.078  Score=56.16  Aligned_cols=165  Identities=8%  Similarity=0.069  Sum_probs=103.4

Q ss_pred             CeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEE---ecCCCEEEEEe-------
Q 004969          500 SVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHV---NSMDELFLASG-------  569 (721)
Q Consensus       500 ~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~---sp~~~~lls~g-------  569 (721)
                      ---+..|.+.++.++++.-..|+|..||...+........+..  ........+..+.|   .+++..+++..       
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s--~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~   91 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGAS--SNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF   91 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTC--CSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCcc--ccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence            3446789744455555555899999999975432111111000  00000113578999   57755555433       


Q ss_pred             ------CCCcEEEEECC---CCcEEEEEccc-c-----------CCCeEEEEEcCCCCcEEEEEECC-CcEEEEECCCCC
Q 004969          570 ------YSKNIALYDIN---SGRRLQVFADM-H-----------KEHINVVKFSNHSPSIFATSSFD-QDVKLWDLRQKP  627 (721)
Q Consensus       570 ------~Dg~IrlWDl~---s~~~v~~l~~~-h-----------~~~V~sI~fsPdg~~lLaSgs~D-gtIrIWDlrs~~  627 (721)
                            .+..+..||+.   +++.+....-. .           ......++..++| +..++++.- +.|..++.....
T Consensus        92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G-naYVt~s~~~~~I~rV~pdG~~  170 (334)
T 2p9w_A           92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG-NSYVAFALGMPAIARVSADGKT  170 (334)
T ss_dssp             TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS-CEEEEEEESSCEEEEECTTSCC
T ss_pred             cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCC-CEEEeCCCCCCeEEEEeCCCCE
Confidence                  15779999999   88776655410 1           1247899999999 888888888 887777776543


Q ss_pred             ceeEEEecC----CCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          628 IQPCYTASS----SKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       628 ~~~~~~~~~----~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                      ......-..    ..+...++++|+|..|++....|.+..+|+.
T Consensus       171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred             EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence            222221110    1123378999999999988779999999987

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=96.66  E-value=0.00056  Score=72.22  Aligned_cols=76  Identities=17%  Similarity=0.230  Sum_probs=38.6

Q ss_pred             eEeecccccccccccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhccc
Q 004969          128 EVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQ  206 (721)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (721)
                      +.|+|+.|++..+... -+.+|++|+|. .|.|+.+..+.|..||+|+.|.|.+|++...-....++..+ +|++|++.
T Consensus       105 ~~L~L~~n~l~~l~~~-~~~~L~~L~l~-~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~  180 (332)
T 2ft3_A          105 QKLYISKNHLVEIPPN-LPSSLVELRIH-DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS  180 (332)
T ss_dssp             CEEECCSSCCCSCCSS-CCTTCCEEECC-SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred             CEEECCCCcCCccCcc-ccccCCEEECC-CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence            4455555555544321 23555555555 55555555555555666666666655554332333344444 55555443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=96.65  E-value=0.00067  Score=76.51  Aligned_cols=103  Identities=21%  Similarity=0.274  Sum_probs=64.7

Q ss_pred             ccceEeeccCCchhhH---HHHHhhcCCccceEeecccccccccc--cccccceeeEEeccccccccccccccccccccc
Q 004969          100 QKLRVVDLHDSSFGKD---FIRNLSQRGLMCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNL  174 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  174 (721)
                      .+||++||+.+.+..-   .+..+    -.=+.|+|++|+|..+.  .++.+.+|++|+|. .|.|+.+....|..|++|
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l----~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L  100 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRAC----ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS-DNHLSSLSSSWFGPLSSL  100 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSC----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECT-TSCCCSCCHHHHTTCTTC
T ss_pred             CCccEEECcCCccCccChhhhhcC----CcccEEECCCCCcCccChhhccccccCCEEECC-CCccCccCHHHhccCCCC
Confidence            4677777777655421   11111    12356777777777664  36667777777777 667777777777777777


Q ss_pred             chhccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969          175 ICLSMCETRVGNLWTTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (721)
                      +.|.+.+|++..+- ...++.+|++|++|++..|
T Consensus       101 ~~L~Ls~n~l~~~~-~~~~~~~l~~L~~L~L~~n  133 (549)
T 2z81_A          101 KYLNLMGNPYQTLG-VTSLFPNLTNLQTLRIGNV  133 (549)
T ss_dssp             CEEECTTCCCSSSC-SSCSCTTCTTCCEEEEEES
T ss_pred             cEEECCCCcccccc-hhhhhhccCCccEEECCCC
Confidence            77777777766431 1134666777777766554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=96.65  E-value=0.0008  Score=75.51  Aligned_cols=99  Identities=17%  Similarity=0.254  Sum_probs=63.2

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhcc
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM  179 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (721)
                      .+|+.++|.++.+..     +. .+..=+.|+|++|+|..+.. +.|++|.+|+|+ +|.|+.+....|..||+|+.|.|
T Consensus        80 ~~L~~L~Ls~N~l~~-----l~-~~~~L~~L~L~~N~l~~~~~-~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L~L  151 (487)
T 3oja_A           80 STLRTLDLNNNYVQE-----LL-VGPSIETLHAANNNISRVSC-SRGQGKKNIYLA-NNKITMLRDLDEGCRSRVQYLDL  151 (487)
T ss_dssp             TTCCEEECCSSEEEE-----EE-ECTTCCEEECCSSCCCCEEE-CCCSSCEEEECC-SSCCCSGGGBCGGGGSSEEEEEC
T ss_pred             CCCCEEEecCCcCCC-----CC-CCCCcCEEECcCCcCCCCCc-cccCCCCEEECC-CCCCCCCCchhhcCCCCCCEEEC
Confidence            456666666655431     11 11334556666666666554 357778888887 77788877777788888888888


Q ss_pred             ccccchhhhHHHHHhh-cCCcchhhcccee
Q 004969          180 CETRVGNLWTTIAALS-KLPSLAELRFQNW  208 (721)
Q Consensus       180 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  208 (721)
                      .+|++..+  ...++. +|++|++|.++.|
T Consensus       152 s~N~l~~~--~~~~l~~~l~~L~~L~Ls~N  179 (487)
T 3oja_A          152 KLNEIDTV--NFAELAASSDTLEHLNLQYN  179 (487)
T ss_dssp             TTSCCCEE--EGGGGGGGTTTCCEEECTTS
T ss_pred             CCCCCCCc--ChHHHhhhCCcccEEecCCC
Confidence            88877653  123343 6777777776655

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=96.64  E-value=0.00048  Score=81.35  Aligned_cols=100  Identities=19%  Similarity=0.182  Sum_probs=71.2

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccc-cccccceeeEEecccccccccccccccccccccchhc
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN-MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLS  178 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (721)
                      .+|++++|..+.+. ..-.+++ .--.=+.|+|++|+|..|- -++.+.+|.+|+|+ .|.|+.|++ .|..|++|+.|.
T Consensus       224 ~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls-~N~l~~lp~-~~~~l~~L~~L~  299 (727)
T 4b8c_D          224 QLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLS-HNRLTSLPA-ELGSCFQLKYFY  299 (727)
T ss_dssp             CCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECT-TSCCSSCCS-SGGGGTTCSEEE
T ss_pred             CCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCc-CCcCCccCh-hhcCCCCCCEEE
Confidence            57888888887664 2112233 2223467888888888774 36788889999999 777888854 478889999999


Q ss_pred             cccccchhhhHHHHHhhcCCcchhhccc
Q 004969          179 MCETRVGNLWTTIAALSKLPSLAELRFQ  206 (721)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (721)
                      |.+|++..|=   ..+.+|++|++|.+.
T Consensus       300 L~~N~l~~lp---~~~~~l~~L~~L~L~  324 (727)
T 4b8c_D          300 FFDNMVTTLP---WEFGNLCNLQFLGVE  324 (727)
T ss_dssp             CCSSCCCCCC---SSTTSCTTCCCEECT
T ss_pred             CCCCCCCccC---hhhhcCCCccEEeCC
Confidence            9998887552   237788888888644

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=96.64  E-value=0.00029  Score=79.51  Aligned_cols=105  Identities=20%  Similarity=0.216  Sum_probs=61.1

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeeccccccccccc--ccccceeeEEecccccccccccc-cccccccccch
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKE-DCFSCMPNLIC  176 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~  176 (721)
                      .+||+++|+++.+..-.-.. +..=-.=+.|+|++|++..+.-  ++.+.+|++|+|+ .|.++.+.. ..|..|++|+.
T Consensus        50 ~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~~l~~L~~  127 (549)
T 2z81_A           50 ANLQVLILKSSRINTIEGDA-FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM-GNPYQTLGVTSLFPNLTNLQT  127 (549)
T ss_dssp             TTCCEEECTTSCCCEECTTT-TTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT-TCCCSSSCSSCSCTTCTTCCE
T ss_pred             CcccEEECCCCCcCccChhh-ccccccCCEEECCCCccCccCHHHhccCCCCcEEECC-CCcccccchhhhhhccCCccE
Confidence            46777777776554211000 0111123567777777776654  5667777777777 566666543 46777777777


Q ss_pred             hcccccc-chhhhHHHHHhhcCCcchhhcccee
Q 004969          177 LSMCETR-VGNLWTTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       177 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  208 (721)
                      |.+.+|+ +..+  ...++.+|++|++|.++.|
T Consensus       128 L~L~~n~~~~~~--~~~~~~~l~~L~~L~L~~n  158 (549)
T 2z81_A          128 LRIGNVETFSEI--RRIDFAGLTSLNELEIKAL  158 (549)
T ss_dssp             EEEEESSSCCEE--CTTTTTTCCEEEEEEEEET
T ss_pred             EECCCCcccccc--CHhhhhcccccCeeeccCC
Confidence            7777776 3322  0135666777777766643

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=96.64  E-value=0.00053  Score=79.69  Aligned_cols=65  Identities=17%  Similarity=0.360  Sum_probs=49.0

Q ss_pred             ccccceeeEEecccccccccccccccccccccchhccccccchhhhHHH------HHhhcCCcchhhcccee
Q 004969          143 IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTI------AALSKLPSLAELRFQNW  208 (721)
Q Consensus       143 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~  208 (721)
                      ++.+.+|++|+|. .|.|+.+..+.|..+++|+.|.+.+|++..+|...      ..+..|++|++|.+..+
T Consensus       476 ~~~l~~L~~L~Ls-~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N  546 (680)
T 1ziw_A          476 FQPLRNLTILDLS-NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN  546 (680)
T ss_dssp             TTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS
T ss_pred             cccCCCCCEEECC-CCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC
Confidence            4456778888888 67888888888888888888888888888776532      23677788888876543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.61  E-value=0.0019  Score=62.59  Aligned_cols=108  Identities=16%  Similarity=0.223  Sum_probs=47.8

Q ss_pred             hcccceEeeccCC-chhhHHHHHhhc---CCccceEeecccccccccc------cccccceeeEEeccccccccccc---
Q 004969           98 IDQKLRVVDLHDS-SFGKDFIRNLSQ---RGLMCEVLNLRSSRFRKLN------MIGEFKRIHTLNLDYSTSLTSFK---  164 (721)
Q Consensus        98 ~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~---  164 (721)
                      -+.+|+.++|.++ .+|.+-++.|+.   .--.-+.|+|+.|+|..-+      ++...+.|++|+|. .|.|+.-.   
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~-~N~i~~~g~~~  112 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVE-SNFISGSGILA  112 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECC-SSCCCHHHHHH
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECc-CCcCCHHHHHH
Confidence            3455555555554 554444443332   1122334555555544321      11222445556665 44555421   


Q ss_pred             -ccccccccccchhcc--ccccchhhh--HHHHHhhcCCcchhhccc
Q 004969          165 -EDCFSCMPNLICLSM--CETRVGNLW--TTIAALSKLPSLAELRFQ  206 (721)
Q Consensus       165 -~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~  206 (721)
                       .......++|+.|.|  .+|.|.+-=  .-..+|.+.++|++|.++
T Consensus       113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~  159 (185)
T 1io0_A          113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYH  159 (185)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred             HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEecc
Confidence             122334455666666  555555310  012344555566666543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=96.60  E-value=0.0005  Score=78.66  Aligned_cols=105  Identities=19%  Similarity=0.200  Sum_probs=69.1

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccc---cccccccceeeEEecccccccccccccccccccccch
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRK---LNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLIC  176 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  176 (721)
                      .+|+.++|.++.+....-..+ ..=-+=+.|+|++|++..   -..++.+++|++|+|. .+.|+.+....|..||+|+.
T Consensus       424 ~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~  501 (606)
T 3vq2_A          424 EKLLYLDISYTNTKIDFDGIF-LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLS-KCQLEQISWGVFDTLHRLQL  501 (606)
T ss_dssp             TTCCEEECTTSCCEECCTTTT-TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT-TSCCCEECTTTTTTCTTCCE
T ss_pred             ccCCEEECcCCCCCccchhhh-cCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECC-CCcCCccChhhhcccccCCE
Confidence            578888888776544221111 111234667888887765   2345677788888888 66777777777888888888


Q ss_pred             hccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969          177 LSMCETRVGNLWTTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (721)
                      |.+.+|++..+  .-.++.+|++|++|.+..|
T Consensus       502 L~Ls~N~l~~~--~~~~~~~l~~L~~L~l~~N  531 (606)
T 3vq2_A          502 LNMSHNNLLFL--DSSHYNQLYSLSTLDCSFN  531 (606)
T ss_dssp             EECCSSCCSCE--EGGGTTTCTTCCEEECTTS
T ss_pred             EECCCCcCCCc--CHHHccCCCcCCEEECCCC
Confidence            88888877654  1245667777777777654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=96.59  E-value=0.00086  Score=80.65  Aligned_cols=103  Identities=9%  Similarity=0.181  Sum_probs=72.3

Q ss_pred             ccceEeeccCCc-hhh----HHHHHhh---cCCccceEeeccccccccccc---ccccceeeEEeccccccccccccccc
Q 004969          100 QKLRVVDLHDSS-FGK----DFIRNLS---QRGLMCEVLNLRSSRFRKLNM---IGEFKRIHTLNLDYSTSLTSFKEDCF  168 (721)
Q Consensus       100 ~~~~~~~~~~~~-~~~----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~  168 (721)
                      .+|+.++|.++. +..    +.+.+|.   ..-..=+.|+|++|+|..+--   ++.+++|++|+|. .|.|+.|+  .|
T Consensus       515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls-~N~l~~lp--~~  591 (876)
T 4ecn_A          515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCV-HNKVRHLE--AF  591 (876)
T ss_dssp             SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECT-TSCCCBCC--CC
T ss_pred             CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECC-CCCcccch--hh
Confidence            478888888875 443    2334443   222245678888888887654   7788888888888 67788777  78


Q ss_pred             ccccccchhccccccchhhhHHHHHhhcCCc-chhhcccee
Q 004969          169 SCMPNLICLSMCETRVGNLWTTIAALSKLPS-LAELRFQNW  208 (721)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  208 (721)
                      ..||+|+.|.+.+|++..+-   +.+.++++ |++|.+..|
T Consensus       592 ~~L~~L~~L~Ls~N~l~~lp---~~l~~l~~~L~~L~Ls~N  629 (876)
T 4ecn_A          592 GTNVKLTDLKLDYNQIEEIP---EDFCAFTDQVEGLGFSHN  629 (876)
T ss_dssp             CTTSEESEEECCSSCCSCCC---TTSCEECTTCCEEECCSS
T ss_pred             cCCCcceEEECcCCccccch---HHHhhccccCCEEECcCC
Confidence            88888888888888877442   34777777 888877665

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=96.57  E-value=0.00046  Score=78.95  Aligned_cols=56  Identities=18%  Similarity=0.261  Sum_probs=28.1

Q ss_pred             eEeeccccccccc-ccccccceeeEEecccccccccccccccccccccchhccccccc
Q 004969          128 EVLNLRSSRFRKL-NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRV  184 (721)
Q Consensus       128 ~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (721)
                      +.|+|++|++..+ ..++.+++|++|+|. .+.|+.+....|..+|+|+.|.+.+|++
T Consensus       281 ~~L~l~~n~l~~lp~~l~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n~~  337 (606)
T 3t6q_A          281 QELDLTATHLSELPSGLVGLSTLKKLVLS-ANKFENLCQISASNFPSLTHLSIKGNTK  337 (606)
T ss_dssp             SEEECTTSCCSCCCSSCCSCTTCCEEECT-TCCCSBGGGGCGGGCTTCSEEECCSCSS
T ss_pred             CEEeccCCccCCCChhhcccccCCEEECc-cCCcCcCchhhhhccCcCCEEECCCCCc
Confidence            4455555555544 223445555555555 4455555444455555555555555443

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.57  E-value=0.66  Score=53.51  Aligned_cols=189  Identities=8%  Similarity=0.008  Sum_probs=122.2

Q ss_pred             CEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeE
Q 004969          467 CLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVT  546 (721)
Q Consensus       467 ~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~  546 (721)
                      .+|+.+ ..+.|+..++.+......++. .....+.+|+|.+.++..+++-..++.|..+++......         .+.
T Consensus         7 ~~Ll~s-~~~~I~~i~l~~~~~~~~~~~-~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~---------~v~   75 (628)
T 4a0p_A            7 AFLLFS-RRADIRRISLETNNNNVAIPL-TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALE---------HVV   75 (628)
T ss_dssp             CEEEEE-ETTEEEEEESSCTTCEEECCC-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---------EEE
T ss_pred             cEEEEE-eCCcEEEEECCCCCcceEEEc-CCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcE---------EEE
Confidence            344444 467899999987655444443 224568899998555555666667899999998764321         111


Q ss_pred             eccCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE-ECCCcEEEEECC
Q 004969          547 FDEFDQLTSVHVNSMDELFLASGY-SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS-SFDQDVKLWDLR  624 (721)
Q Consensus       547 ~~~~~~V~sv~~sp~~~~lls~g~-Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg-s~DgtIrIWDlr  624 (721)
                      .........+++...++.++.+.. .+.|.+.++........+.. .-.....|++.|..+.++.+- +..+.|...++.
T Consensus        76 ~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~-~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~d  154 (628)
T 4a0p_A           76 EFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWK-DLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMD  154 (628)
T ss_dssp             CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECS-SCCCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             eCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeC-CCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCC
Confidence            111123567888777777776654 67899999875433222322 445678999999654555554 235778888887


Q ss_pred             CCCceeEEEecCCCCeEEEEEecCCCEEEEEe-CCCcEEEEEcCCC
Q 004969          625 QKPIQPCYTASSSKGNVMVCFSPDDHYLLGKG-SGTSMFVQSLRGD  669 (721)
Q Consensus       625 s~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs-~Dg~I~VWDl~g~  669 (721)
                      ......+.  ..-..+..+++++++..|+.+. ..+.|...++.|.
T Consensus       155 G~~~~~l~--~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~  198 (628)
T 4a0p_A          155 GSERTTLV--PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGL  198 (628)
T ss_dssp             SCSCEEEE--CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCceEEEE--CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCC
Confidence            65433332  3445666899999877777665 4568889998764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=96.55  E-value=0.00064  Score=71.45  Aligned_cols=103  Identities=9%  Similarity=0.121  Sum_probs=48.4

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeeccccccccc--ccccccceeeEEecccccccccccccccccccccchh
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKL--NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL  177 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  177 (721)
                      .+|+.++|..+.+....-..++.---.=+.|+|++|++...  ..++.+. |.+|+|. .|.|+......|..+|+|+.|
T Consensus       149 ~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L  226 (313)
T 1ogq_A          149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS-RNMLEGDASVLFGSDKNTQKI  226 (313)
T ss_dssp             TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECC-SSEEEECCGGGCCTTSCCSEE
T ss_pred             CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECc-CCcccCcCCHHHhcCCCCCEE
Confidence            46666666666554222222221111234566666655421  1222222 5555555 445555555555555555555


Q ss_pred             ccccccchhhhHHHHHhhcCCcchhhccce
Q 004969          178 SMCETRVGNLWTTIAALSKLPSLAELRFQN  207 (721)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (721)
                      .|.+|++...   +..+..+++|++|.++.
T Consensus       227 ~L~~N~l~~~---~~~~~~l~~L~~L~Ls~  253 (313)
T 1ogq_A          227 HLAKNSLAFD---LGKVGLSKNLNGLDLRN  253 (313)
T ss_dssp             ECCSSEECCB---GGGCCCCTTCCEEECCS
T ss_pred             ECCCCceeee---cCcccccCCCCEEECcC
Confidence            5555555422   22244455555555544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=96.55  E-value=0.00065  Score=76.85  Aligned_cols=105  Identities=19%  Similarity=0.164  Sum_probs=78.7

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccc--cccccceeeEEecccccccccccccccccccccchh
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL  177 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  177 (721)
                      ..+|.+||+++.+..--- .-+.+=-.=++|+|++|++..+.  .++.+.+|++|+|. .|.|+.+..+.|..+++|+.|
T Consensus        28 ~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L  105 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT-GNPIQSLALGAFSGLSSLQKL  105 (570)
T ss_dssp             SSCCEEECCSCCCCEECT-TTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECT-TCCCCEECTTTTTTCTTCCEE
T ss_pred             ccccEEEccCCccCccCh-hHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCc-CCcCCccCHhhhcCccccccc
Confidence            467888888875432100 00111123478999999998875  47889999999999 778999999999999999999


Q ss_pred             ccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969          178 SMCETRVGNLWTTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (721)
                      .+.+|++..+-.  .++.+|++|++|.+..|
T Consensus       106 ~L~~n~l~~l~~--~~~~~l~~L~~L~L~~n  134 (570)
T 2z63_A          106 VAVETNLASLEN--FPIGHLKTLKELNVAHN  134 (570)
T ss_dssp             ECTTSCCCCSTT--CSCTTCTTCCEEECCSS
T ss_pred             cccccccccCCC--ccccccccccEEecCCC
Confidence            999999887622  13788999999987764

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.54  E-value=0.16  Score=59.78  Aligned_cols=216  Identities=13%  Similarity=0.125  Sum_probs=127.0

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEee-cCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIP-SFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~-~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~  533 (721)
                      .|.++...+ ++.+ -.|+.++-|..|+..++....... .......|.++... .++. |..|+.++-+..+|..+++.
T Consensus       364 ~v~~i~~d~-~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d-~~g~-lWigt~~~Gl~~~~~~~~~~  439 (781)
T 3v9f_A          364 VVSSVCDDG-QGKL-WIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKD-SEGN-LWFGTYLGNISYYNTRLKKF  439 (781)
T ss_dssp             CEEEEEECT-TSCE-EEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEEC-TTSC-EEEEETTEEEEEECSSSCEE
T ss_pred             ceEEEEEcC-CCCE-EEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEEC-CCCC-EEEEeccCCEEEEcCCCCcE
Confidence            588898887 6664 456656669999987554332111 01234678888864 3444 55577777788888876432


Q ss_pred             cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcc----ccCCCeEEEEEcCCCCcEE
Q 004969          534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD----MHKEHINVVKFSNHSPSIF  609 (721)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~----~h~~~V~sI~fsPdg~~lL  609 (721)
                      .  .....     ......|.++...+++. +.+++. +-+..||..+++.......    .....|.++...++| .+.
T Consensus       440 ~--~~~~~-----~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g-~lW  509 (781)
T 3v9f_A          440 Q--IIELE-----KNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEG-RFW  509 (781)
T ss_dssp             E--ECCST-----TTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTC-CEE
T ss_pred             E--EeccC-----CCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCC-CEE
Confidence            1  11000     01224578888765554 555555 5689999887765443321    014678999999888 444


Q ss_pred             EEEECCCcEEEEECCCCCceeEEEecC--CCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCccccc-------ccCeE
Q 004969          610 ATSSFDQDVKLWDLRQKPIQPCYTASS--SKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDF-------NMSIL  679 (721)
Q Consensus       610 aSgs~DgtIrIWDlrs~~~~~~~~~~~--~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~~~-------~~~V~  679 (721)
                       .|+.++-+..||..+++... +....  ....+ ++...++|...+++. +|.+..||.....+..+       ...|.
T Consensus       510 -igt~~~Gl~~~~~~~~~~~~-~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~~~~~~~gl~~~~i~  586 (781)
T 3v9f_A          510 -IGTFGGGVGIYTPDMQLVRK-FNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQVFQRKEGLPNTHIR  586 (781)
T ss_dssp             -EEESSSCEEEECTTCCEEEE-ECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCCEEECGGGTCSCCCCC
T ss_pred             -EEEcCCCEEEEeCCCCeEEE-ccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcEEEccccCCCCCceEE
Confidence             45553447778987764322 11111  12233 788888998777544 55548888765444332       12466


Q ss_pred             EEEECCCC
Q 004969          680 AAYTRPSS  687 (721)
Q Consensus       680 ~v~fsP~~  687 (721)
                      ++...+++
T Consensus       587 ~i~~d~~g  594 (781)
T 3v9f_A          587 AISEDKNG  594 (781)
T ss_dssp             EEEECSSS
T ss_pred             EEEECCCC
Confidence            67676666

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=96.50  E-value=0.00046  Score=82.74  Aligned_cols=103  Identities=23%  Similarity=0.371  Sum_probs=55.6

Q ss_pred             ccceEeeccCCchh----hHHHHHhhcCCccceEeeccccccccc--ccccccceeeEEeccccccccc--ccccccccc
Q 004969          100 QKLRVVDLHDSSFG----KDFIRNLSQRGLMCEVLNLRSSRFRKL--NMIGEFKRIHTLNLDYSTSLTS--FKEDCFSCM  171 (721)
Q Consensus       100 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~  171 (721)
                      .+||++||..+.+.    .+.+++|.    .=++|+|++|+|..+  ..++.+.+|++|+|. .|.++.  ...+.|..+
T Consensus        48 ~~L~~LdLs~n~~~~~i~~~~f~~L~----~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~~~L  122 (844)
T 3j0a_A           48 EQLQLLELGSQYTPLTIDKEAFRNLP----NLRILDLGSSKIYFLHPDAFQGLFHLFELRLY-FCGLSDAVLKDGYFRNL  122 (844)
T ss_dssp             CSCSEEEECTTCCCCEECTTTTSSCT----TCCEEECTTCCCCEECTTSSCSCSSCCCEECT-TCCCSSCCSTTCCCSSC
T ss_pred             ccCeEEeCCCCCCccccCHHHhcCCC----CCCEEECCCCcCcccCHhHccCCcccCEeeCc-CCCCCcccccCcccccc
Confidence            45666666665221    11222221    234566666666665  445566666666666 445554  334456666


Q ss_pred             cccchhccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969          172 PNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (721)
                      ++|+.|.+.+|.+..+- -...+.+|++|++|.+..+
T Consensus       123 ~~L~~L~Ls~N~l~~~~-~~~~~~~L~~L~~L~Ls~N  158 (844)
T 3j0a_A          123 KALTRLDLSKNQIRSLY-LHPSFGKLNSLKSIDFSSN  158 (844)
T ss_dssp             SSCCEEEEESCCCCCCC-CCGGGGTCSSCCEEEEESS
T ss_pred             CCCCEEECCCCcccccc-cchhHhhCCCCCEEECCCC
Confidence            66666666666665431 1124566666666665543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.50  E-value=0.00098  Score=64.46  Aligned_cols=85  Identities=11%  Similarity=0.137  Sum_probs=65.7

Q ss_pred             CCccceEeeccccccccc--ccccccceeeEEecccccccccccccccccc----cccchhccccc-cchhhhHHHHHhh
Q 004969          123 RGLMCEVLNLRSSRFRKL--NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCM----PNLICLSMCET-RVGNLWTTIAALS  195 (721)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~  195 (721)
                      .++.=+.|||+.+.|..-  ..+..+++|++|+|.+|..||--.-.-.+.|    |+|+.|.+.++ +|.+  ..+++|.
T Consensus        59 ~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD--~Gl~~L~  136 (176)
T 3e4g_A           59 DKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD--KGIIALH  136 (176)
T ss_dssp             TCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH--HHHHHGG
T ss_pred             CCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH--HHHHHHh
Confidence            345557777777766543  3346899999999999999997665556654    68999999985 6886  4678999


Q ss_pred             cCCcchhhccceee
Q 004969          196 KLPSLAELRFQNWL  209 (721)
Q Consensus       196 ~~~~~~~~~~~~~~  209 (721)
                      ++|+|+.|....|.
T Consensus       137 ~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          137 HFRNLKYLFLSDLP  150 (176)
T ss_dssp             GCTTCCEEEEESCT
T ss_pred             cCCCCCEEECCCCC
Confidence            99999999887763

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.49  E-value=0.0014  Score=67.62  Aligned_cols=78  Identities=23%  Similarity=0.258  Sum_probs=62.4

Q ss_pred             cceEeecccccccccccc----cccceeeEEecccccccccccc-cccccccccchhccccccchhhhH-----HHHHhh
Q 004969          126 MCEVLNLRSSRFRKLNMI----GEFKRIHTLNLDYSTSLTSFKE-DCFSCMPNLICLSMCETRVGNLWT-----TIAALS  195 (721)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  195 (721)
                      ..+.|+|++|+|..|.-+    +.|++|++|+|. +|.|+++.+ +.+..+ +|+.|.|.+|.+..-+.     ....+.
T Consensus       171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls-~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~  248 (267)
T 3rw6_A          171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLS-GNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRE  248 (267)
T ss_dssp             TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECT-TSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHH
T ss_pred             CCCEEECCCCCCCCCccchhHHhhCCCCCEEECC-CCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHHHH
Confidence            578899999999998644    489999999999 999999854 555555 99999999999985221     135688


Q ss_pred             cCCcchhhcc
Q 004969          196 KLPSLAELRF  205 (721)
Q Consensus       196 ~~~~~~~~~~  205 (721)
                      .+|+|+.|..
T Consensus       249 ~~P~L~~LDg  258 (267)
T 3rw6_A          249 RFPKLLRLDG  258 (267)
T ss_dssp             HCTTCCEESS
T ss_pred             HCcccCeECC
Confidence            8999988843

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=96.48  E-value=0.0019  Score=73.74  Aligned_cols=79  Identities=23%  Similarity=0.352  Sum_probs=60.9

Q ss_pred             cceEeeccccccccccc--ccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhh
Q 004969          126 MCEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAEL  203 (721)
Q Consensus       126 ~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (721)
                      .=+.|+|+.|++..+..  ++.+++|++|+|. .+.|+.+++. |..||+|+.|.+.+|++..+-  -.++.++++|++|
T Consensus       255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~lp~~-l~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L  330 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNTFHCFSGLQELDLT-ATHLSELPSG-LVGLSTLKKLVLSANKFENLC--QISASNFPSLTHL  330 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTTTTTCTTCSEEECT-TSCCSCCCSS-CCSCTTCCEEECTTCCCSBGG--GGCGGGCTTCSEE
T ss_pred             ceeEEEeecCccCccCHHHhccccCCCEEecc-CCccCCCChh-hcccccCCEEECccCCcCcCc--hhhhhccCcCCEE
Confidence            45678888888877765  6778888889988 6788888765 677888999999888887552  2457788888888


Q ss_pred             cccee
Q 004969          204 RFQNW  208 (721)
Q Consensus       204 ~~~~~  208 (721)
                      .+..|
T Consensus       331 ~l~~n  335 (606)
T 3t6q_A          331 SIKGN  335 (606)
T ss_dssp             ECCSC
T ss_pred             ECCCC
Confidence            87765

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=96.46  E-value=0.001  Score=69.88  Aligned_cols=106  Identities=9%  Similarity=0.138  Sum_probs=78.5

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeeccccccc-cc-ccccccc-eeeEEecccccccccccccccccccccch
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFR-KL-NMIGEFK-RIHTLNLDYSTSLTSFKEDCFSCMPNLIC  176 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  176 (721)
                      .+|+.++|..+.+....-..+. .=-+=+.|+|+.|+|. .+ ..++.+. +|++|+|. .|.++......|..++ |+.
T Consensus       125 ~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~-~N~l~~~~~~~~~~l~-L~~  201 (313)
T 1ogq_A          125 KTLVTLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS-RNRLTGKIPPTFANLN-LAF  201 (313)
T ss_dssp             TTCCEEECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECC-SSEEEEECCGGGGGCC-CSE
T ss_pred             CCCCEEeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECc-CCeeeccCChHHhCCc-ccE
Confidence            6899999999877632211111 1124577999999986 33 3456676 89999999 8888877777888887 999


Q ss_pred             hccccccchhhhHHHHHhhcCCcchhhccceeee
Q 004969          177 LSMCETRVGNLWTTIAALSKLPSLAELRFQNWLC  210 (721)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (721)
                      |.+.+|++...  .-.++.++++|++|.+..+--
T Consensus       202 L~Ls~N~l~~~--~~~~~~~l~~L~~L~L~~N~l  233 (313)
T 1ogq_A          202 VDLSRNMLEGD--ASVLFGSDKNTQKIHLAKNSL  233 (313)
T ss_dssp             EECCSSEEEEC--CGGGCCTTSCCSEEECCSSEE
T ss_pred             EECcCCcccCc--CCHHHhcCCCCCEEECCCCce
Confidence            99999998754  235678899999999887654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=96.45  E-value=0.00072  Score=76.90  Aligned_cols=57  Identities=16%  Similarity=0.306  Sum_probs=33.8

Q ss_pred             ceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhccce
Q 004969          147 KRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQN  207 (721)
Q Consensus       147 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (721)
                      .+|++|+|+ .|.|+.|+.+.| .||+|+.|.+.+|++..+-..  ++..+++|++|.+..
T Consensus       450 ~~L~~L~L~-~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~--~~~~l~~L~~L~l~~  506 (562)
T 3a79_B          450 PKVKVLDLH-NNRIMSIPKDVT-HLQALQELNVASNQLKSVPDG--VFDRLTSLQYIWLHD  506 (562)
T ss_dssp             TTCSEEECC-SSCCCCCCTTTT-SSCCCSEEECCSSCCCCCCTT--STTTCTTCCCEECCS
T ss_pred             CcCCEEECC-CCcCcccChhhc-CCCCCCEEECCCCCCCCCCHH--HHhcCCCCCEEEecC
Confidence            466666666 456666666666 666666666666666644222  355666666665543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=96.44  E-value=0.0012  Score=76.74  Aligned_cols=77  Identities=26%  Similarity=0.376  Sum_probs=39.6

Q ss_pred             eEeeccccccccccc--ccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhcc
Q 004969          128 EVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRF  205 (721)
Q Consensus       128 ~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (721)
                      ++|+|++|++..+.-  ++.+.+|++|+|. .|.|+.+..+.|..|++|+.|.+.+|++..+  ...++.+|++|++|.+
T Consensus        76 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L  152 (680)
T 1ziw_A           76 KVLNLQHNELSQLSDKTFAFCTNLTELHLM-SNSIQKIKNNPFVKQKNLITLDLSHNGLSST--KLGTQVQLENLQELLL  152 (680)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCSEEECC-SSCCCCCCSCTTTTCTTCCEEECCSSCCSCC--CCCSSSCCTTCCEEEC
T ss_pred             CEEECCCCccCccChhhhccCCCCCEEECC-CCccCccChhHccccCCCCEEECCCCccccc--CchhhcccccCCEEEc
Confidence            445555555555542  4555555555555 4455555555555555555555555554432  1123345555555554


Q ss_pred             ce
Q 004969          206 QN  207 (721)
Q Consensus       206 ~~  207 (721)
                      ..
T Consensus       153 ~~  154 (680)
T 1ziw_A          153 SN  154 (680)
T ss_dssp             CS
T ss_pred             cC
Confidence            44

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=96.43  E-value=0.00065  Score=72.56  Aligned_cols=75  Identities=20%  Similarity=0.265  Sum_probs=58.2

Q ss_pred             ceEeeccccccccccc-ccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhh
Q 004969          127 CEVLNLRSSRFRKLNM-IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAEL  203 (721)
Q Consensus       127 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (721)
                      =+.|+|++|+|+.+.- +....+|.+|+|..++.++.|+++.|..|++|+.|.|.+|++..+=.  .++.+|++|+.|
T Consensus       156 l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~--~~~~~L~~L~~l  231 (350)
T 4ay9_X          156 SVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS--YGLENLKKLRAR  231 (350)
T ss_dssp             CEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS--SSCTTCCEEECT
T ss_pred             hhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh--hhhccchHhhhc
Confidence            4679999999998743 34567899999987899999999999999999999999999987621  234444444433

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=96.43  E-value=0.00089  Score=76.13  Aligned_cols=102  Identities=17%  Similarity=0.125  Sum_probs=58.0

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeeccccccccc--ccccccceeeEEecccccccccccccccccccccchh
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKL--NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL  177 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  177 (721)
                      .+|+.++|+++.+..--- +-+.+=-.=++|+|++|+|..+  +.++.+++|++|+|. .|.|+.++..   .+++|+.|
T Consensus        52 ~~L~~L~Ls~N~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~lp~~---~l~~L~~L  126 (562)
T 3a79_B           52 PRTKALSLSQNSISELRM-PDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS-HNRLQNISCC---PMASLRHL  126 (562)
T ss_dssp             TTCCEEECCSSCCCCCCG-GGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT-TSCCCEECSC---CCTTCSEE
T ss_pred             CCcCEEECCCCCccccCh-hhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC-CCcCCccCcc---ccccCCEE
Confidence            566777776665432100 0011111345677777777666  335666677777777 5566666665   56777777


Q ss_pred             ccccccchhhhHHHHHhhcCCcchhhccce
Q 004969          178 SMCETRVGNLWTTIAALSKLPSLAELRFQN  207 (721)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (721)
                      .+.+|++..+. --+++.+|++|++|.++.
T Consensus       127 ~Ls~N~l~~l~-~p~~~~~l~~L~~L~L~~  155 (562)
T 3a79_B          127 DLSFNDFDVLP-VCKEFGNLTKLTFLGLSA  155 (562)
T ss_dssp             ECCSSCCSBCC-CCGGGGGCTTCCEEEEEC
T ss_pred             ECCCCCccccC-chHhhcccCcccEEecCC
Confidence            77777666442 013566666676666554

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.41  E-value=0.29  Score=56.36  Aligned_cols=198  Identities=10%  Similarity=0.050  Sum_probs=117.6

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeE-EEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENI-VSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~-i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~  533 (721)
                      .+..++|++.++.++.+=...+.|..+++..... ...+.  .......++++.+..+++.++-...+.|.+.++.+...
T Consensus        41 ~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~--~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~  118 (619)
T 3s94_A           41 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV--SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR  118 (619)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             ceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEe--CCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence            4789999995555555545578899999875432 22232  22356888998744555666666788999999987433


Q ss_pred             cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC--CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEE
Q 004969          534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY--SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFAT  611 (721)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~--Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaS  611 (721)
                      ..         ...........++++|.++.++.+..  .+.|...++. |.....+....-...+.+++++++.+++++
T Consensus       119 ~~---------l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~~~~P~Glald~~~~~LY~a  188 (619)
T 3s94_A          119 KV---------LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPNGLTLDYEEQKLYWA  188 (619)
T ss_dssp             EE---------EECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSSEEEEEEETTTTEEEEE
T ss_pred             EE---------EEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC-CCceEEEEeCCCCCCcEEEEEccCCEEEEE
Confidence            11         11112233578899998887777764  3567777776 333333322144578999999977566666


Q ss_pred             EECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEE-eCCCcEEEEEcC
Q 004969          612 SSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGK-GSGTSMFVQSLR  667 (721)
Q Consensus       612 gs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasg-s~Dg~I~VWDl~  667 (721)
                      -...+.|..+|+.......+.. .....+..+++..+  .|+.+ ...+.|...|..
T Consensus       189 D~~~~~I~~~~~dG~~~~~~~~-~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~  242 (619)
T 3s94_A          189 DAKLNFIHKSNLDGTNRQAVVK-GSLPHPFALTLFED--ILYWTDWSTHSILACNKY  242 (619)
T ss_dssp             ETTTCCEEEESSSCCEEC----------CCCEEESSS--EEEEECTTTCSEEEEESS
T ss_pred             eCCCCeEEEecCCCCccEEEEe-CCCCCceEEEEeCC--EEEEecCCCCEEEEEECC
Confidence            6677889999987643222211 11122335666544  44444 456678777764

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.38  E-value=0.89  Score=48.32  Aligned_cols=231  Identities=11%  Similarity=0.098  Sum_probs=125.4

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe-EEEEeec-CCCCCCeEEEEEeeC---CCCEEEEEeC---C----Ce
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN-IVSYIPS-FGAMNSVLGLCWLKK---YPSKLIAGSD---N----GS  522 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~-~i~~l~~-~~H~~~V~sl~fsp~---d~~~LaSgs~---D----Gt  522 (721)
                      .++.++|.| ++.++ ++..+|.|++++ .+|+ .+..+.. ........+|+++|.   ++.+.++-+.   +    +.
T Consensus        30 ~P~~ia~~p-dG~l~-V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           30 VPWSIAPLG-GGRYL-VTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             CEEEEEEEE-TTEEE-EEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCeEEEEcC-CCeEE-EEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            488999999 77754 456679999997 4455 2222211 112356889999843   2444444332   3    56


Q ss_pred             EEEEEcCCCCCcccccccCcceeE-ec--cCCCeEEEEEecCCCEEEEEeCC-------------CcEEEEECCCCc---
Q 004969          523 LKLYDIRHMPPSIRGMHYGAGTVT-FD--EFDQLTSVHVNSMDELFLASGYS-------------KNIALYDINSGR---  583 (721)
Q Consensus       523 VrIWDi~~~~~~~~~~~~~~~~~~-~~--~~~~V~sv~~sp~~~~lls~g~D-------------g~IrlWDl~s~~---  583 (721)
                      |..|+..........   ...... +.  .......++|.|++..+++.+..             |.|.-+|.. ++   
T Consensus       107 v~r~~~~~~~~~~~~---~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p~  182 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKE---VKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRPPA  182 (354)
T ss_dssp             EEEEEECSSSCCEEE---EEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCCCT
T ss_pred             EEEEEECCCCcCcCc---cEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCCCC
Confidence            777777653211100   000000 11  11124678999988776665431             455555554 22   


Q ss_pred             -----EEEEEccccCCCeEEEEEcC-CCCcEEEEEECCCc-EEEEECCCCC----------------ceeEEEe-cCCCC
Q 004969          584 -----RLQVFADMHKEHINVVKFSN-HSPSIFATSSFDQD-VKLWDLRQKP----------------IQPCYTA-SSSKG  639 (721)
Q Consensus       584 -----~v~~l~~~h~~~V~sI~fsP-dg~~lLaSgs~Dgt-IrIWDlrs~~----------------~~~~~~~-~~~~~  639 (721)
                           ....+..++. ....++|+| +| .++++-..... -.|.-+..+.                ..+...+ ..+..
T Consensus       183 ~npf~~~~i~a~G~r-np~Gla~d~~~g-~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~a  260 (354)
T 3a9g_A          183 DNPFPNSPIWSYGHR-NPQGIDWHRASG-VMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWA  260 (354)
T ss_dssp             TSSSTTCCEEEECCS-CCCEEEECTTTC-CEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCC
T ss_pred             CCCCCCCcEEEEccC-CcceEEEeCCCC-CEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcC
Confidence                 0111221133 346799999 55 66655433221 1122122211                1234444 34555


Q ss_pred             eEEEEEe-------cCCCEEEEEeCCCcEEEEEcCCC-cc---ccc----ccCeEEEEECCCCCcccccccEEEEec
Q 004969          640 NVMVCFS-------PDDHYLLGKGSGTSMFVQSLRGD-PF---RDF----NMSILAAYTRPSSKSEIVKVNLLASTD  701 (721)
Q Consensus       640 ~vsl~fS-------pdg~~Lasgs~Dg~I~VWDl~g~-~l---~~~----~~~V~~v~fsP~~~~~~v~v~lLASgs  701 (721)
                      +..++|.       .+|.++++.-..+.|...++.+. ..   ..+    ...+..+++.|++       .+.++..
T Consensus       261 p~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG-------~lyv~~~  330 (354)
T 3a9g_A          261 PSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDG-------GILISTS  330 (354)
T ss_dssp             EEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTS-------CEEEEEC
T ss_pred             CcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCC-------cEEEEEe
Confidence            6678883       57877777766778888887732 11   111    2468889999999       7777664

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=96.30  E-value=0.00092  Score=70.96  Aligned_cols=76  Identities=20%  Similarity=0.306  Sum_probs=54.2

Q ss_pred             ceEeeccc-cccccccc--ccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhh
Q 004969          127 CEVLNLRS-SRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAEL  203 (721)
Q Consensus       127 ~~~~~~~~-~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (721)
                      =+.|+|++ |+|..+..  ++.+.+|++|+|. .|.|+.+..+-|..|++|+.|.|.+|++..+=..  ++..+ +|++|
T Consensus        33 L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~-~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~--~~~~~-~L~~l  108 (347)
T 2ifg_A           33 LTELYIENQQHLQHLELRDLRGLGELRNLTIV-KSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK--TVQGL-SLQEL  108 (347)
T ss_dssp             CSEEECCSCSSCCEECGGGSCSCCCCSEEECC-SSCCCEECTTGGGSCSCCCEEECCSSCCSCCCST--TTCSC-CCCEE
T ss_pred             eeEEEccCCCCCCCcChhHhccccCCCEEECC-CCccceeCHHHhcCCcCCCEEeCCCCccceeCHH--HcccC-CceEE
Confidence            46688885 88887753  7778888888888 6688888888888888888888888887755211  12223 37776


Q ss_pred             ccc
Q 004969          204 RFQ  206 (721)
Q Consensus       204 ~~~  206 (721)
                      .+.
T Consensus       109 ~l~  111 (347)
T 2ifg_A          109 VLS  111 (347)
T ss_dssp             ECC
T ss_pred             Eee
Confidence            654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=96.25  E-value=0.0026  Score=76.55  Aligned_cols=103  Identities=15%  Similarity=0.144  Sum_probs=49.7

Q ss_pred             cceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccc---------cccceeeEEeccccccccccccccc-cc
Q 004969          101 KLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMI---------GEFKRIHTLNLDYSTSLTSFKEDCF-SC  170 (721)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~~~~~-~~  170 (721)
                      +|+.++|+.+.+. .+-..++..--.-+.|+|++|+|..+...         +.+++|.+|+|. .|.|+.++...+ ..
T Consensus       674 ~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls-~N~L~~lp~~l~~~~  751 (876)
T 4ecn_A          674 NASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLR-FNKLTSLSDDFRATT  751 (876)
T ss_dssp             CEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECC-SSCCCCCCGGGSTTT
T ss_pred             CcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECC-CCCCccchHHhhhcc
Confidence            4555555554443 12222222222234466666555533221         011256666666 456666554443 36


Q ss_pred             ccccchhccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969          171 MPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (721)
                      ||+|+.|.+.+|++..+-   ..+..|++|++|.+..+
T Consensus       752 l~~L~~L~Ls~N~L~~lp---~~l~~L~~L~~L~Ls~N  786 (876)
T 4ecn_A          752 LPYLSNMDVSYNCFSSFP---TQPLNSSQLKAFGIRHQ  786 (876)
T ss_dssp             CTTCCEEECCSSCCSSCC---CGGGGCTTCCEEECCCC
T ss_pred             CCCcCEEEeCCCCCCccc---hhhhcCCCCCEEECCCC
Confidence            666666666666665431   23445566666655543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=96.23  E-value=0.0028  Score=75.04  Aligned_cols=79  Identities=11%  Similarity=0.074  Sum_probs=61.7

Q ss_pred             ceEeecccccccccccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhccc
Q 004969          127 CEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQ  206 (721)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (721)
                      =+.|+|+.|++....-.+.+++|++|+|. .+.++..... |..+|+|+.|.+.+|++...  ...++.++++|++|.+.
T Consensus       180 L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~Ls  255 (768)
T 3rgz_A          180 LKHLAISGNKISGDVDVSRCVNLEFLDVS-SNNFSTGIPF-LGDCSALQHLDISGNKLSGD--FSRAISTCTELKLLNIS  255 (768)
T ss_dssp             CCEEECCSSEEESCCBCTTCTTCCEEECC-SSCCCSCCCB-CTTCCSCCEEECCSSCCCSC--HHHHTTTCSSCCEEECC
T ss_pred             CCEEECCCCcccccCCcccCCcCCEEECc-CCcCCCCCcc-cccCCCCCEEECcCCcCCCc--ccHHHhcCCCCCEEECC
Confidence            45677777777766666788999999999 5666665444 99999999999999998743  23578899999999988


Q ss_pred             eee
Q 004969          207 NWL  209 (721)
Q Consensus       207 ~~~  209 (721)
                      .|-
T Consensus       256 ~n~  258 (768)
T 3rgz_A          256 SNQ  258 (768)
T ss_dssp             SSC
T ss_pred             CCc
Confidence            763

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.20  E-value=1.1  Score=51.57  Aligned_cols=198  Identities=7%  Similarity=0.031  Sum_probs=120.4

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .+.+++|++.++.++++-...+.|+.++.........+.  .......++++.+..+++.++-+..+.|.+.++.+....
T Consensus       350 ~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~--~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~  427 (619)
T 3s94_A          350 HAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVT--AQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRK  427 (619)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             ccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEE--CCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEE
Confidence            478999999555555565568899999987544433333  223456677775345566666667789999998764321


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC--CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY--SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS  612 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~--Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg  612 (721)
                               ...........+++++|..+.++.+..  .+.|...++. |.....+....-...+.+++++++.++.++=
T Consensus       428 ---------~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~l~~P~GlalD~~~~~LY~aD  497 (619)
T 3s94_A          428 ---------ILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALD-GSDRVVLVNTSLGWPNGLALDYDEGKIYWGD  497 (619)
T ss_dssp             ---------EEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred             ---------EEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccC-CCccEEEEeCCCCCCeeeEEcccCCEEEEEE
Confidence                     111112345689999998777777653  3567777776 3333333322456788999998774566665


Q ss_pred             ECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEe-CCCcEEEEEcC
Q 004969          613 SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKG-SGTSMFVQSLR  667 (721)
Q Consensus       613 s~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs-~Dg~I~VWDl~  667 (721)
                      +..+.|..+++.......+.. ..-..+..++...+  +|+.+. ..+.|...+..
T Consensus       498 ~~~~~I~~~~~dG~~~~~~~~-~~l~~P~glav~~~--~ly~tD~~~~~I~~~~k~  550 (619)
T 3s94_A          498 AKTDKIEVMNTDGTGRRVLVE-DKIPHIFGFTLLGD--YVYWTDWQRRSIERVHKR  550 (619)
T ss_dssp             TTTTEEEEEESSSCCCEEEEE-CCCCSSCCEEEETT--EEEEECTTSSCEEEEESS
T ss_pred             CCCCEEEEEecCCCceEEEec-cCCCCcEEEEEECC--EEEEeecCCCeEEEEEcC
Confidence            666889999987654332222 22223334555433  555443 34456555544

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.20  E-value=0.58  Score=50.03  Aligned_cols=190  Identities=10%  Similarity=0.178  Sum_probs=107.0

Q ss_pred             EEEEEeCCCCCEEEEE------------ECCCeEEEEECCC--CeEEEEeecCC-----CCCCeEEEEEeeC-CCC-EEE
Q 004969          457 RQFEYHPSISCLMVFG------------TLDGEIVVVNHEN--ENIVSYIPSFG-----AMNSVLGLCWLKK-YPS-KLI  515 (721)
Q Consensus       457 ~~lafsP~dg~~LasG------------s~DG~I~IWdl~t--g~~i~~l~~~~-----H~~~V~sl~fsp~-d~~-~La  515 (721)
                      -.++..| +|..+++.            ..+|.|.++|..+  ++. ..+...+     ..-...++.+.+. ++. +|+
T Consensus        53 EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           53 EDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             ceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            3466667 55443333            1699999999873  332 2333222     2346778887642 333 344


Q ss_pred             EE-eC--CCeEEEEEcCCCCCcccccccCcceeEecc--CCCeEEEEEecCCCEEEEEeC-----------------CCc
Q 004969          516 AG-SD--NGSLKLYDIRHMPPSIRGMHYGAGTVTFDE--FDQLTSVHVNSMDELFLASGY-----------------SKN  573 (721)
Q Consensus       516 Sg-s~--DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~--~~~V~sv~~sp~~~~lls~g~-----------------Dg~  573 (721)
                      .+ ..  +.+|.+|++.........      ...+.+  ....+.+.+.++|..+++...                 .|.
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~~------~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~  204 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLLH------LKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSF  204 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEE------EEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEE
T ss_pred             EEECCCCCCeEEEEEEECCCCEEEE------EeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccE
Confidence            44 33  568889888764332111      111221  234788999888776655431                 244


Q ss_pred             EEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCC-CCceeEEEecCCCCeEEEEEec-CCCE
Q 004969          574 IALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQ-KPIQPCYTASSSKGNVMVCFSP-DDHY  651 (721)
Q Consensus       574 IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs-~~~~~~~~~~~~~~~vsl~fSp-dg~~  651 (721)
                      |..+|.  ++. ..+.. .-...+.++|+|++..+.++-+..+.|..||+.. +.......+.....+-.++.++ +|.+
T Consensus       205 vyr~d~--~~~-~~~~~-~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~l  280 (355)
T 3sre_A          205 VTYYSP--NDV-RVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDL  280 (355)
T ss_dssp             EEEECT--TCC-EEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCE
T ss_pred             EEEEEC--CeE-EEeec-CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcE
Confidence            555554  332 22222 3346789999999955556666788999999864 3322222222222222789999 5998


Q ss_pred             EEEEeCC
Q 004969          652 LLGKGSG  658 (721)
Q Consensus       652 Lasgs~D  658 (721)
                      .+++..+
T Consensus       281 wva~~~~  287 (355)
T 3sre_A          281 WVGCHPN  287 (355)
T ss_dssp             EEEEESC
T ss_pred             EEEecCC
Confidence            8876544

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.17  E-value=1.5  Score=45.62  Aligned_cols=215  Identities=9%  Similarity=0.010  Sum_probs=110.3

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeec--CCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPS--FGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP  532 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~--~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~  532 (721)
                      .+.+|.|.+ .+..+++ +.+|.|. .....|+.=.....  ......+.+|.|. + + .++.++.+|.|.. ..+.++
T Consensus        37 ~~~~v~~~~-~~~~~~~-G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~-~-~-~~~~~g~~g~i~~-S~DgG~  109 (327)
T 2xbg_A           37 TILDMSFID-RHHGWLV-GVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQ-G-N-EGWIVGEPPIMLH-TTDGGQ  109 (327)
T ss_dssp             CEEEEEESS-SSCEEEE-ETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEE-T-T-EEEEEEETTEEEE-ESSTTS
T ss_pred             cEEEEEECC-CCcEEEE-cCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEec-C-C-eEEEEECCCeEEE-ECCCCC
Confidence            488899887 6666664 4577653 33343432122211  1123468899886 3 3 3444566775543 222222


Q ss_pred             CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969          533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS  612 (721)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg  612 (721)
                       .........     .....+..+.+.+++. +++++.++.|.. ....|+.-......+...+..+.+.|++ .+++.+
T Consensus       110 -tW~~~~~~~-----~~~~~~~~i~~~~~~~-~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~-~~~~~g  180 (327)
T 2xbg_A          110 -SWSQIPLDP-----KLPGSPRLIKALGNGS-AEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSG-EYVAVS  180 (327)
T ss_dssp             -SCEECCCCT-----TCSSCEEEEEEEETTE-EEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTS-CEEEEE
T ss_pred             -CceECcccc-----CCCCCeEEEEEECCCC-EEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCC-cEEEEE
Confidence             121111000     0112356677655554 445555665422 1222332222222256678999999987 666666


Q ss_pred             ECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC-CCcccc-------cccCeEEEEEC
Q 004969          613 SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR-GDPFRD-------FNMSILAAYTR  684 (721)
Q Consensus       613 s~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~l~~-------~~~~V~~v~fs  684 (721)
                      ...+..+-+|-.......+ ..........+.++++++.+++ +.+|.+++++.. |.....       ....+..+.+.
T Consensus       181 ~~G~~~~S~d~gG~tW~~~-~~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~  258 (327)
T 2xbg_A          181 SRGSFYSTWEPGQTAWEPH-NRTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYR  258 (327)
T ss_dssp             TTSSEEEEECTTCSSCEEE-ECCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEES
T ss_pred             CCCcEEEEeCCCCCceeEC-CCCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccCCcceEEEEec
Confidence            4444444445322222222 2222334447889999887654 457888777433 332211       12347888898


Q ss_pred             CCC
Q 004969          685 PSS  687 (721)
Q Consensus       685 P~~  687 (721)
                      |.+
T Consensus       259 ~~~  261 (327)
T 2xbg_A          259 TPN  261 (327)
T ss_dssp             SSS
T ss_pred             CCC
Confidence            876

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.16  E-value=1.2  Score=46.55  Aligned_cols=218  Identities=8%  Similarity=0.031  Sum_probs=111.2

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecC-CCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSF-GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~-~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~  533 (721)
                      .+.+|.|+|  +..++ ++.+|.|.. ....|+.-...... .+.+.+..+.+. .++..++ ++.+|.|.. ..+.++.
T Consensus        81 ~~~~i~~~~--~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~-~~~~~~~-~~~~g~v~~-S~DgG~t  153 (327)
T 2xbg_A           81 RFNSVSFQG--NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKAL-GNGSAEM-ITNVGAIYR-TKDSGKN  153 (327)
T ss_dssp             EEEEEEEET--TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEE-ETTEEEE-EETTCCEEE-ESSTTSS
T ss_pred             cEEEEEecC--CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEE-CCCCEEE-EeCCccEEE-EcCCCCC
Confidence            478889987  23444 455665544 33334332222211 233557788876 3444444 445664422 1122221


Q ss_pred             cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcE-EEEEC--CCCcEEEEEccccCCCeEEEEEcCCCCcEEE
Q 004969          534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNI-ALYDI--NSGRRLQVFADMHKEHINVVKFSNHSPSIFA  610 (721)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~I-rlWDl--~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLa  610 (721)
                       ....       .......+..+.+.+++..+++ +.+|.+ +-+|-  .+.+.+   .......+..+.+.+++ .++ 
T Consensus       154 -W~~~-------~~~~~~~~~~~~~~~~~~~~~~-g~~G~~~~S~d~gG~tW~~~---~~~~~~~~~~~~~~~~g-~~~-  219 (327)
T 2xbg_A          154 -WQAL-------VQEAIGVMRNLNRSPSGEYVAV-SSRGSFYSTWEPGQTAWEPH---NRTTSRRLHNMGFTPDG-RLW-  219 (327)
T ss_dssp             -EEEE-------ECSCCCCEEEEEECTTSCEEEE-ETTSSEEEEECTTCSSCEEE---ECCSSSCEEEEEECTTS-CEE-
T ss_pred             -CEEe-------ecCCCcceEEEEEcCCCcEEEE-ECCCcEEEEeCCCCCceeEC---CCCCCCccceeEECCCC-CEE-
Confidence             1111       1112245788899887665554 444544 44443  233333   22256678899999988 454 


Q ss_pred             EEECCCcEEEEECCCCCceeEEEec---CCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC-CCcccc------cccCeEE
Q 004969          611 TSSFDQDVKLWDLRQKPIQPCYTAS---SSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR-GDPFRD------FNMSILA  680 (721)
Q Consensus       611 Sgs~DgtIrIWDlrs~~~~~~~~~~---~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~l~~------~~~~V~~  680 (721)
                      .++.+|.+++++...++.-......   .......+.+.+++..++++. +|.++ +... |.....      ....+..
T Consensus       220 ~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i~-~S~DgG~tW~~~~~~~~~~~~~~~  297 (327)
T 2xbg_A          220 MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGALL-CSQDGGQTWQQDVDVKKVPSNFYK  297 (327)
T ss_dssp             EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCEE-EESSTTSSCEECGGGTTSSSCCCE
T ss_pred             EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeEE-EeCCCCcccEEcCccCCCCCCeEE
Confidence            4556788877743222110001111   122344788998888777655 67673 3443 333221      1235677


Q ss_pred             EEECCCCCcccccccEEEEecC
Q 004969          681 AYTRPSSKSEIVKVNLLASTDH  702 (721)
Q Consensus       681 v~fsP~~~~~~v~v~lLASgs~  702 (721)
                      +.|.+++       .+++.|..
T Consensus       298 v~~~~~~-------~~~~~G~~  312 (327)
T 2xbg_A          298 ILFFSPD-------QGFILGQK  312 (327)
T ss_dssp             EEEEETT-------EEEEECST
T ss_pred             EEEECCC-------ceEEEcCC
Confidence            7776655       55665543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=96.10  E-value=0.0039  Score=71.43  Aligned_cols=53  Identities=15%  Similarity=0.188  Sum_probs=26.2

Q ss_pred             ceEeecccccccccccccccceeeEEecccccccccccccccccccccchhccccccchh
Q 004969          127 CEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGN  186 (721)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (721)
                      -+.|+|++|+|..+.  +.+.+|.+|+|. .|.|+.|+.  |..  +|+.|.|.+|++..
T Consensus        82 L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls-~N~l~~ip~--l~~--~L~~L~Ls~N~l~~  134 (571)
T 3cvr_A           82 ITVLEITQNALISLP--ELPASLEYLDAC-DNRLSTLPE--LPA--SLKHLDVDNNQLTM  134 (571)
T ss_dssp             CSEEECCSSCCSCCC--CCCTTCCEEECC-SSCCSCCCC--CCT--TCCEEECCSSCCSC
T ss_pred             CCEEECcCCCCcccc--cccCCCCEEEcc-CCCCCCcch--hhc--CCCEEECCCCcCCC
Confidence            344555555555444  445555555555 445555544  222  45555555554443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=96.10  E-value=0.0018  Score=68.69  Aligned_cols=76  Identities=13%  Similarity=0.167  Sum_probs=63.8

Q ss_pred             eecccc-cccccccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhccce
Q 004969          130 LNLRSS-RFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQN  207 (721)
Q Consensus       130 ~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (721)
                      ++++++ ++..+--++.+.+|.+|+|+.+|.|+.+..+-|..|++|+.|.|.+|++..+=  -.++.+|++|++|.+..
T Consensus        13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~--~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA--PDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC--TTGGGSCSCCCEEECCS
T ss_pred             EEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC--HHHhcCCcCCCEEeCCC
Confidence            577776 78877668888999999999449999999999999999999999999988652  13678999999997654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=96.09  E-value=0.0017  Score=75.36  Aligned_cols=103  Identities=10%  Similarity=0.250  Sum_probs=68.4

Q ss_pred             ccceEeeccCCc-hhh-HHHHHhhc-----CCccceEeeccccccccccc---ccccceeeEEecccccccc-ccccccc
Q 004969          100 QKLRVVDLHDSS-FGK-DFIRNLSQ-----RGLMCEVLNLRSSRFRKLNM---IGEFKRIHTLNLDYSTSLT-SFKEDCF  168 (721)
Q Consensus       100 ~~~~~~~~~~~~-~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~-~~~~~~~  168 (721)
                      .+|+.++|.++. +.. ..-..++.     .--.=+.|+|++|++..+--   ++.+.+|++|+|. .|.++ .++  -|
T Consensus       273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~-~N~l~g~ip--~~  349 (636)
T 4eco_A          273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECL-YNQLEGKLP--AF  349 (636)
T ss_dssp             SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECC-SCCCEEECC--CC
T ss_pred             CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCc-CCcCccchh--hh
Confidence            467777887775 543 22222222     11234668888888876654   6777788888888 66777 776  67


Q ss_pred             ccccccchhccccccchhhhHHHHHhhcCCc-chhhcccee
Q 004969          169 SCMPNLICLSMCETRVGNLWTTIAALSKLPS-LAELRFQNW  208 (721)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  208 (721)
                      ..+++|+.|.+.+|++..+   -+.+.++++ |++|.+..+
T Consensus       350 ~~l~~L~~L~L~~N~l~~l---p~~l~~l~~~L~~L~Ls~N  387 (636)
T 4eco_A          350 GSEIKLASLNLAYNQITEI---PANFCGFTEQVENLSFAHN  387 (636)
T ss_dssp             EEEEEESEEECCSSEEEEC---CTTSEEECTTCCEEECCSS
T ss_pred             CCCCCCCEEECCCCccccc---cHhhhhhcccCcEEEccCC
Confidence            7888888888888887733   234677777 777776654

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.03  E-value=0.12  Score=56.95  Aligned_cols=155  Identities=8%  Similarity=0.091  Sum_probs=92.2

Q ss_pred             CCeEEEEEeeC-CCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC----Cc
Q 004969          499 NSVLGLCWLKK-YPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS----KN  573 (721)
Q Consensus       499 ~~V~sl~fsp~-d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D----g~  573 (721)
                      ....+|+|.|. +...|+.+...+.|+.+|..++...  .        ..........+++++++. ++++...    ..
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~--~--------~~~~~~~P~giavd~dG~-lyVad~~~~~~~~  207 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVD--I--------KTTNIGQCADVNFTLNGD-MVVVDDQSSDTNT  207 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEE--E--------ECCCCSCEEEEEECTTCC-EEEEECCSCTTSE
T ss_pred             CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEE--E--------eecCCCCccEEEECCCCC-EEEEcCCCCcccc
Confidence            34668898742 3445555554488999998664321  1        111223468999999998 5555432    12


Q ss_pred             -EEEEECCCCcE-EEEEccccCCCeEEEEEcC-CCCcEEEEEECCCcEEEEECCCCCc-eeEEEecCCCCeEEEEEecCC
Q 004969          574 -IALYDINSGRR-LQVFADMHKEHINVVKFSN-HSPSIFATSSFDQDVKLWDLRQKPI-QPCYTASSSKGNVMVCFSPDD  649 (721)
Q Consensus       574 -IrlWDl~s~~~-v~~l~~~h~~~V~sI~fsP-dg~~lLaSgs~DgtIrIWDlrs~~~-~~~~~~~~~~~~vsl~fSpdg  649 (721)
                       +...+...+.. ...+.  .......++++| +| .++++-..++.|+.+|..++.. ..+...........++|+|+|
T Consensus       208 gv~~~~~~~~~~~~~~~~--~~~~P~giavd~~~G-~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG  284 (433)
T 4hw6_A          208 GIYLFTRASGFTERLSLC--NARGAKTCAVHPQNG-KIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTG  284 (433)
T ss_dssp             EEEEECGGGTTCCEEEEE--ECSSBCCCEECTTTC-CEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTS
T ss_pred             eEEEEECCCCeecccccc--ccCCCCEEEEeCCCC-eEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCC
Confidence             33333322211 11121  223456788999 55 6777777788999999987654 223333222223369999999


Q ss_pred             CEEEEEe-CCCcEEEEEcC
Q 004969          650 HYLLGKG-SGTSMFVQSLR  667 (721)
Q Consensus       650 ~~Lasgs-~Dg~I~VWDl~  667 (721)
                      ++|+.+. ..+.|+.++..
T Consensus       285 ~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          285 DWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             SEEEEEETTTTEEEEEEBC
T ss_pred             CEEEEEeCCCCEEEEEeCC
Confidence            9665554 56789998865

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=95.98  E-value=0.0016  Score=78.15  Aligned_cols=110  Identities=13%  Similarity=0.068  Sum_probs=79.7

Q ss_pred             hcccceEeeccCCchhhHHHHHhhcCCccceEeeccccc-cccc--ccccccceeeEEeccccccccccccccccccccc
Q 004969           98 IDQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSR-FRKL--NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNL  174 (721)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  174 (721)
                      +-.+||++||..+.+..-.-.. +..=-.=++|||+.|. +..+  +.++.+.+|++|+|. .|+|+.+..+.|..+++|
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~~-~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls-~N~l~~~~p~~~~~l~~L   99 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTASS-FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG-SSKIYFLHPDAFQGLFHL   99 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSSS-CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT-TCCCCEECTTSSCSCSSC
T ss_pred             CCCCcCEEECCCCcCCccChhH-CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC-CCcCcccCHhHccCCccc
Confidence            4468999999987653211000 1111234789999884 3343  457888999999999 888999999999999999


Q ss_pred             chhccccccchhhhHHHHHhhcCCcchhhccceee
Q 004969          175 ICLSMCETRVGNLWTTIAALSKLPSLAELRFQNWL  209 (721)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (721)
                      +.|.|.+|++...--...++.+|++|++|.+..|-
T Consensus       100 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~  134 (844)
T 3j0a_A          100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ  134 (844)
T ss_dssp             CCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC
T ss_pred             CEeeCcCCCCCcccccCccccccCCCCEEECCCCc
Confidence            99999999988632222348899999999988763

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=95.94  E-value=0.0034  Score=72.63  Aligned_cols=72  Identities=19%  Similarity=0.211  Sum_probs=47.8

Q ss_pred             ceEeecccccccccccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhccc
Q 004969          127 CEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQ  206 (721)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (721)
                      =+.|+|++|+|..+.  +.+.+|.+|+|+ .|.|++|+.    .+|+|+.|.+.+|++..+   -..+.+|++|+.|.+.
T Consensus       223 L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls-~N~L~~lp~----~~~~L~~L~Ls~N~L~~l---p~~l~~l~~L~~L~L~  292 (622)
T 3g06_A          223 LKELIVSGNRLTSLP--VLPSELKELMVS-GNRLTSLPM----LPSGLLSLSVYRNQLTRL---PESLIHLSSETTVNLE  292 (622)
T ss_dssp             CCEEECCSSCCSCCC--CCCTTCCEEECC-SSCCSCCCC----CCTTCCEEECCSSCCCSC---CGGGGGSCTTCEEECC
T ss_pred             CCEEEccCCccCcCC--CCCCcCcEEECC-CCCCCcCCc----ccccCcEEeCCCCCCCcC---CHHHhhccccCEEEec
Confidence            355677777666655  556777777777 557777765    567777777777777744   1346677777777665


Q ss_pred             ee
Q 004969          207 NW  208 (721)
Q Consensus       207 ~~  208 (721)
                      .+
T Consensus       293 ~N  294 (622)
T 3g06_A          293 GN  294 (622)
T ss_dssp             SC
T ss_pred             CC
Confidence            54

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.90  E-value=0.94  Score=48.02  Aligned_cols=232  Identities=12%  Similarity=0.106  Sum_probs=122.8

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeec-----CCCCCCeEEEEEeeC---CCCEEEEEeC-------
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPS-----FGAMNSVLGLCWLKK---YPSKLIAGSD-------  519 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~-----~~H~~~V~sl~fsp~---d~~~LaSgs~-------  519 (721)
                      .++.|+|.| +++.+.++...|.|++++.. +.....+..     .........|+|+|.   ++.+.++-+.       
T Consensus        19 ~P~~i~~~p-dG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           19 HPWALAFLP-DNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SEEEEEECS-TTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CcEEEEEcC-CCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            488999999 88834455678999999853 432211110     012346789999842   3444444332       


Q ss_pred             CCeEEEEEcCCCCCcccccccCcceeE-ec----cCCCeEEEEEecCCCEEEEEeCC-------------CcEEEEECCC
Q 004969          520 NGSLKLYDIRHMPPSIRGMHYGAGTVT-FD----EFDQLTSVHVNSMDELFLASGYS-------------KNIALYDINS  581 (721)
Q Consensus       520 DGtVrIWDi~~~~~~~~~~~~~~~~~~-~~----~~~~V~sv~~sp~~~~lls~g~D-------------g~IrlWDl~s  581 (721)
                      ...|..|+.......+...   ..... +.    ....-..+.|.|++..+++.+..             |.|.-+|...
T Consensus        97 ~~~v~r~~~~~~~~~~~~~---~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG  173 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDF---RTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQG  173 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEE---EEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTS
T ss_pred             eeEEEEEEECCCCCCCCce---EEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCC
Confidence            2356666665432111100   00000 00    01113578999988665555432             4566667653


Q ss_pred             Cc------------EEEEEccccCCCeEEEEEcC-CCCcEEEEEEC-CCcEEEEECCCC---------------------
Q 004969          582 GR------------RLQVFADMHKEHINVVKFSN-HSPSIFATSSF-DQDVKLWDLRQK---------------------  626 (721)
Q Consensus       582 ~~------------~v~~l~~~h~~~V~sI~fsP-dg~~lLaSgs~-DgtIrIWDlrs~---------------------  626 (721)
                      .-            ....+..++ .....++|+| +| .++++-.. ++.=+|.-+..+                     
T Consensus       174 ~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g-~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~  251 (353)
T 2g8s_A          174 EIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSN-ALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPE  251 (353)
T ss_dssp             CCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTT-EEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTT
T ss_pred             CCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCC-CEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCc
Confidence            20            111222113 3467899999 55 55554332 222223222211                     


Q ss_pred             --------CceeEEEecCCCCeEEEEEec-------CCCEEEEEeCCCcEEEEEcCCCc-c------cccccCeEEEEEC
Q 004969          627 --------PIQPCYTASSSKGNVMVCFSP-------DDHYLLGKGSGTSMFVQSLRGDP-F------RDFNMSILAAYTR  684 (721)
Q Consensus       627 --------~~~~~~~~~~~~~~vsl~fSp-------dg~~Lasgs~Dg~I~VWDl~g~~-l------~~~~~~V~~v~fs  684 (721)
                              ...+...+..+..+..++|..       +|.++++.-..+.|...++.+.. .      ......+..+++.
T Consensus       252 ~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~  331 (353)
T 2g8s_A          252 AKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTG  331 (353)
T ss_dssp             CCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEEC
T ss_pred             ccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEEC
Confidence                    012334444455566777764       57777777677788777776422 1      1112478899999


Q ss_pred             CCCCcccccccEEEEe
Q 004969          685 PSSKSEIVKVNLLAST  700 (721)
Q Consensus       685 P~~~~~~v~v~lLASg  700 (721)
                      |++       .+.++.
T Consensus       332 pdG-------~lyv~t  340 (353)
T 2g8s_A          332 PDG-------YLYVLT  340 (353)
T ss_dssp             TTS-------CEEEEE
T ss_pred             CCC-------cEEEEE
Confidence            999       666653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=95.87  E-value=0.0033  Score=69.75  Aligned_cols=95  Identities=20%  Similarity=0.319  Sum_probs=71.7

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhcc
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM  179 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (721)
                      .+|+.++|.++.+..     +..---.-+.|+|++|++..+.-++.+.+|++|+|+ .|.|+.++.    .+++|+.|.+
T Consensus       111 ~~L~~L~l~~n~l~~-----l~~~~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~-~N~l~~lp~----~~~~L~~L~L  180 (454)
T 1jl5_A          111 QSLKSLLVDNNNLKA-----LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVD-NNSLKKLPD----LPPSLEFIAA  180 (454)
T ss_dssp             TTCCEEECCSSCCSC-----CCSCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECC-SSCCSCCCC----CCTTCCEEEC
T ss_pred             CCCcEEECCCCccCc-----ccCCCCCCCEEECcCCCCCCCcccCCCCCCCEEECC-CCcCcccCC----CcccccEEEC
Confidence            688888888876542     111112567799999988888778888889999998 668888764    3468999999


Q ss_pred             ccccchhhhHHHHHhhcCCcchhhcccee
Q 004969          180 CETRVGNLWTTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (721)
                      .+|++..+    .++.+|++|++|.+..|
T Consensus       181 ~~n~l~~l----~~~~~l~~L~~L~l~~N  205 (454)
T 1jl5_A          181 GNNQLEEL----PELQNLPFLTAIYADNN  205 (454)
T ss_dssp             CSSCCSSC----CCCTTCTTCCEEECCSS
T ss_pred             cCCcCCcC----ccccCCCCCCEEECCCC
Confidence            99988875    46888888888887765

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=95.74  E-value=0.004  Score=69.11  Aligned_cols=79  Identities=13%  Similarity=0.259  Sum_probs=46.5

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhcc
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM  179 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (721)
                      .+|++++|.++.+..  +-++ ..=-+=+.|+|++|++..+.  ..+.+|++|+|. .+.++.+++  |..||+|+.|.+
T Consensus       131 ~~L~~L~L~~n~l~~--lp~~-~~l~~L~~L~l~~N~l~~lp--~~~~~L~~L~L~-~n~l~~l~~--~~~l~~L~~L~l  202 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK--LPEL-QNSSFLKIIDVDNNSLKKLP--DLPPSLEFIAAG-NNQLEELPE--LQNLPFLTAIYA  202 (454)
T ss_dssp             TTCCEEECCSSCCSS--CCCC-TTCTTCCEEECCSSCCSCCC--CCCTTCCEEECC-SSCCSSCCC--CTTCTTCCEEEC
T ss_pred             CCCCEEECcCCCCCC--Cccc-CCCCCCCEEECCCCcCcccC--CCcccccEEECc-CCcCCcCcc--ccCCCCCCEEEC
Confidence            577888887776543  2111 11113456777777766543  234567777777 556666652  666777777777


Q ss_pred             ccccchh
Q 004969          180 CETRVGN  186 (721)
Q Consensus       180 ~~~~~~~  186 (721)
                      .+|++..
T Consensus       203 ~~N~l~~  209 (454)
T 1jl5_A          203 DNNSLKK  209 (454)
T ss_dssp             CSSCCSS
T ss_pred             CCCcCCc
Confidence            6666653

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=95.71  E-value=0.16  Score=56.89  Aligned_cols=160  Identities=12%  Similarity=0.064  Sum_probs=96.4

Q ss_pred             CeEEEEEeeC-CCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEE-------ecCCCEEEEEeCC
Q 004969          500 SVLGLCWLKK-YPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHV-------NSMDELFLASGYS  571 (721)
Q Consensus       500 ~V~sl~fsp~-d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~-------sp~~~~lls~g~D  571 (721)
                      ....|+|.|. .++++++....+.|++.|..++...... ....     ........++|       ++++..++++...
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~-~~~~-----~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~  213 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPL-NINT-----IPTNRIRSIAFNKKIEGYADEAEYMIVAIDY  213 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEE-CCTT-----SSCSBEEEEEECCCBTTTBCTTCEEEEEECC
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEE-ccCc-----cccCCCcEEEEeecccccCCCCCEEEEEeCC
Confidence            4568898853 3444444444467888888774431110 0000     01124688999       9999977777654


Q ss_pred             C-------cEEEEECCC-CcEE-----EEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC-------CCCc---
Q 004969          572 K-------NIALYDINS-GRRL-----QVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLR-------QKPI---  628 (721)
Q Consensus       572 g-------~IrlWDl~s-~~~v-----~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlr-------s~~~---  628 (721)
                      +       .|.+++... +...     ..+.. . .....++++|+++.++++-..++.|..+|+.       ++..   
T Consensus       214 ~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp  291 (496)
T 3kya_A          214 DGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-Y-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDP  291 (496)
T ss_dssp             CTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-E-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCC
T ss_pred             CCCcccCceEEEEecCCCCceeecccceeecc-C-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecc
Confidence            3       266776443 2221     22221 1 2345778999665788888888999999987       4432   


Q ss_pred             ---------eeEEEecCCCCeEEEEEecCCCEEEEE-eCCCcEEEEEcC
Q 004969          629 ---------QPCYTASSSKGNVMVCFSPDDHYLLGK-GSGTSMFVQSLR  667 (721)
Q Consensus       629 ---------~~~~~~~~~~~~vsl~fSpdg~~Lasg-s~Dg~I~VWDl~  667 (721)
                               ..++.......+..++|+|+|++|+.+ ...+.|+.++..
T Consensus       292 ~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          292 IVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             BGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             cccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence                     123444333445589999999965555 456688886654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=95.70  E-value=0.0036  Score=72.53  Aligned_cols=82  Identities=7%  Similarity=0.208  Sum_probs=39.5

Q ss_pred             ceEeeccCCchhhHHHHHhhcCCc-cceEeeccccccccc--cccc-------ccceeeEEecccccccccccccccccc
Q 004969          102 LRVVDLHDSSFGKDFIRNLSQRGL-MCEVLNLRSSRFRKL--NMIG-------EFKRIHTLNLDYSTSLTSFKEDCFSCM  171 (721)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~-------~~~~~~~l~~~~~~~~~~~~~~~~~~~  171 (721)
                      |+.++|.++.+. .+-..+....+ .=+.|+|++|+|...  ..++       ...+|++|+|. .|.|+.++...|..|
T Consensus       379 L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls-~N~l~~lp~~~~~~l  456 (636)
T 4eco_A          379 VENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLS-NNQISKFPKELFSTG  456 (636)
T ss_dssp             CCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECC-SSCCCSCCTHHHHTT
T ss_pred             CcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECc-CCccCcCCHHHHccC
Confidence            666666665554 11111111100 234556666555442  1122       33455555555 455555555555555


Q ss_pred             cccchhccccccch
Q 004969          172 PNLICLSMCETRVG  185 (721)
Q Consensus       172 ~~~~~~~~~~~~~~  185 (721)
                      |+|+.|.+.+|++.
T Consensus       457 ~~L~~L~Ls~N~l~  470 (636)
T 4eco_A          457 SPLSSINLMGNMLT  470 (636)
T ss_dssp             CCCSEEECCSSCCS
T ss_pred             CCCCEEECCCCCCC
Confidence            55555555555555

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=95.58  E-value=0.023  Score=66.70  Aligned_cols=185  Identities=9%  Similarity=0.016  Sum_probs=104.7

Q ss_pred             CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeE
Q 004969          475 DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLT  554 (721)
Q Consensus       475 DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~  554 (721)
                      .+.|++.++.+......+.   ....+.+|+|.+..+.++++-...+.|+.+++.+....    ......+ ........
T Consensus       385 ~~~I~~id~~~~~~~~~~~---~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~----~~~~~~i-~~~~~~P~  456 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIP---NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV----SSYDTVI-SRDIQAPD  456 (699)
T ss_dssp             TTC-CEECTTSCCEECCSC---CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-----CCCCCBC-CSCC--CC
T ss_pred             ccceEEEeCCCCcceeeec---cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCC----cceEEEE-eCCCCCcc
Confidence            4578888888766544433   22456788997434444444456688999998751100    0000000 00111235


Q ss_pred             EEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECC-CcEEEEECCCCCceeEE
Q 004969          555 SVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD-QDVKLWDLRQKPIQPCY  632 (721)
Q Consensus       555 sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~D-gtIrIWDlrs~~~~~~~  632 (721)
                      .+++.+.++.|+.+. ..+.|.++++........+.. .......|++.|.++.++++-... +.|.++++...... +.
T Consensus       457 glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~-~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~-~l  534 (699)
T 1n7d_A          457 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE-QGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SL  534 (699)
T ss_dssp             CEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCC-SSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC-EE
T ss_pred             eEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeC-CCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee-EE
Confidence            567765555555554 468899999875543333322 334567889999764556554333 77888887653221 22


Q ss_pred             EecCCCCeEEEEEecCCCEEEEE-eCCCcEEEEEcCCC
Q 004969          633 TASSSKGNVMVCFSPDDHYLLGK-GSGTSMFVQSLRGD  669 (721)
Q Consensus       633 ~~~~~~~~vsl~fSpdg~~Lasg-s~Dg~I~VWDl~g~  669 (721)
                      ....-..+..++|+|++..|+.+ +..+.|.++++.|.
T Consensus       535 ~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~  572 (699)
T 1n7d_A          535 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  572 (699)
T ss_dssp             SCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS
T ss_pred             EeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC
Confidence            11122234479999976655544 45678999998753

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=95.43  E-value=0.0037  Score=72.37  Aligned_cols=76  Identities=20%  Similarity=0.174  Sum_probs=42.3

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhcc
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM  179 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (721)
                      .+|++++|.++.+..     +...=..=+.|+|++|+|..+..  .+.+|.+|+|. .|.|+.|+..    +|+|+.|.+
T Consensus        81 ~~L~~L~Ls~N~l~~-----lp~~l~~L~~L~Ls~N~l~~l~~--~l~~L~~L~L~-~N~l~~lp~~----l~~L~~L~L  148 (622)
T 3g06_A           81 PELRTLEVSGNQLTS-----LPVLPPGLLELSIFSNPLTHLPA--LPSGLCKLWIF-GNQLTSLPVL----PPGLQELSV  148 (622)
T ss_dssp             TTCCEEEECSCCCSC-----CCCCCTTCCEEEECSCCCCCCCC--CCTTCCEEECC-SSCCSCCCCC----CTTCCEEEC
T ss_pred             CCCCEEEcCCCcCCc-----CCCCCCCCCEEECcCCcCCCCCC--CCCCcCEEECC-CCCCCcCCCC----CCCCCEEEC
Confidence            466666666665431     11111233456666666666544  45666666666 5556666543    366666666


Q ss_pred             ccccchhh
Q 004969          180 CETRVGNL  187 (721)
Q Consensus       180 ~~~~~~~~  187 (721)
                      .+|++..+
T Consensus       149 s~N~l~~l  156 (622)
T 3g06_A          149 SDNQLASL  156 (622)
T ss_dssp             CSSCCSCC
T ss_pred             cCCcCCCc
Confidence            66666544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=95.42  E-value=0.013  Score=66.33  Aligned_cols=61  Identities=18%  Similarity=0.165  Sum_probs=29.9

Q ss_pred             cceeeEEeccccccccccccccc-ccccccchhccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969          146 FKRIHTLNLDYSTSLTSFKEDCF-SCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       146 ~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (721)
                      +++|++|+|. ++.|+...-..+ ..+|+|+.|.+.+|++. -+.-.+.+.++++|++|.++.|
T Consensus       455 ~~~L~~L~L~-~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~-~~~~~~~~~~l~~L~~L~l~~~  516 (594)
T 2p1m_B          455 AKKMEMLSVA-FAGDSDLGMHHVLSGCDSLRKLEIRDCPFG-DKALLANASKLETMRSLWMSSC  516 (594)
T ss_dssp             CTTCCEEEEE-SCCSSHHHHHHHHHHCTTCCEEEEESCSCC-HHHHHHTGGGGGGSSEEEEESS
T ss_pred             chhccEeecc-CCCCcHHHHHHHHhcCCCcCEEECcCCCCc-HHHHHHHHHhCCCCCEEeeeCC
Confidence            4455666665 333443322222 44566666666666652 1121222334666666665555

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=95.38  E-value=0.53  Score=47.96  Aligned_cols=190  Identities=15%  Similarity=0.177  Sum_probs=99.1

Q ss_pred             CCCEEEEEECC-----CeEEEEECCCCe---EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC-----CeEEEEEcCCC
Q 004969          465 ISCLMVFGTLD-----GEIVVVNHENEN---IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN-----GSLKLYDIRHM  531 (721)
Q Consensus       465 dg~~LasGs~D-----G~I~IWdl~tg~---~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D-----GtVrIWDi~~~  531 (721)
                      ++.+++.|+.+     ..+.+||..+++   ....-......... +++.  .++..++.|+.+     ..+.+||..+.
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~-~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~  138 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLA-GATT--LGDMIYVSGGFDGSRRHTSMERYDPNID  138 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSC-EEEE--ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccce-eEEE--ECCEEEEEcccCCCcccceEEEEcCCCC
Confidence            45777777755     468999998766   43332211111122 2222  255666677654     36788888764


Q ss_pred             CCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC-----CcEEEEECCCCcEEEEEcccc-CCCeEEEEEcCCC
Q 004969          532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS-----KNIALYDINSGRRLQVFADMH-KEHINVVKFSNHS  605 (721)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D-----g~IrlWDl~s~~~v~~l~~~h-~~~V~sI~fsPdg  605 (721)
                      .-..  +.      .......-.+++. .++..++.||.+     ..+.+||+.+.+-...-.... ......+.+  ++
T Consensus       139 ~W~~--~~------~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~  207 (301)
T 2vpj_A          139 QWSM--LG------DMQTAREGAGLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--ND  207 (301)
T ss_dssp             EEEE--EE------ECSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT
T ss_pred             eEEE--CC------CCCCCcccceEEE-ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CC
Confidence            4211  10      1111111112222 255566666643     468999998876543311101 112222333  44


Q ss_pred             CcEEEEEECC-----CcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEEcCCCc
Q 004969          606 PSIFATSSFD-----QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG-----TSMFVQSLRGDP  670 (721)
Q Consensus       606 ~~lLaSgs~D-----gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D-----g~I~VWDl~g~~  670 (721)
                       .+++.|+.+     ..+.+||+.+.+...+...+......+++. -+++.++.|+.+     ..+.+||.....
T Consensus       208 -~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          208 -HIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV-LRGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             -EEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             -EEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE-ECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence             677888764     468999999876544432222211112222 267777777655     356788877543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=95.26  E-value=0.023  Score=64.44  Aligned_cols=129  Identities=15%  Similarity=0.168  Sum_probs=69.3

Q ss_pred             cceeeEeecCCccccchHHHHHHHHHhcccceEeeccCCc-hhhHHHHHhhcCCccceEeecccccccccc------ccc
Q 004969           72 EIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSS-FGKDFIRNLSQRGLMCEVLNLRSSRFRKLN------MIG  144 (721)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~  144 (721)
                      .++.+|+..   |.+.++-.-.+-+....+|+..+|.... +....+..+...=-.=+.|+|+.|++...+      +..
T Consensus       113 ~L~~L~L~~---~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          113 QLKSVHFRR---MIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             TCCEEEEES---CBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             CCCeEEeec---cEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            455555532   2455544444444444456776666544 333334433322222355677766654432      334


Q ss_pred             ccceeeEEecccccccccccc----cccccccccchhccccccchhhhHHHHHhhcCCcchhhccce
Q 004969          145 EFKRIHTLNLDYSTSLTSFKE----DCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQN  207 (721)
Q Consensus       145 ~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (721)
                      .+++|++|+|. .+.++.+..    .-+..+|+|+.|.+.++.+..+-   ..+.++++|++|.+..
T Consensus       190 ~~~~L~~L~L~-~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~---~~~~~~~~L~~L~l~~  252 (592)
T 3ogk_B          190 HNTSLEVLNFY-MTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV---GFFKAAANLEEFCGGS  252 (592)
T ss_dssp             HCCCCCEEECT-TCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH---HHHHHCTTCCEEEECB
T ss_pred             cCCCccEEEee-ccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH---HHHhhhhHHHhhcccc
Confidence            56777777776 555653332    22445677777777777766542   4556667777776554

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=95.24  E-value=0.57  Score=47.82  Aligned_cols=188  Identities=13%  Similarity=0.177  Sum_probs=97.9

Q ss_pred             CCCEEEEEECC-----CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCC-----eEEEEEcCCCCCc
Q 004969          465 ISCLMVFGTLD-----GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG-----SLKLYDIRHMPPS  534 (721)
Q Consensus       465 dg~~LasGs~D-----G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DG-----tVrIWDi~~~~~~  534 (721)
                      ++.+++.|+.+     ..+.+||..+.+....-......... +++.  .++..++.|+.++     .+.+||..+..-.
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~  137 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTL-GAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWF  137 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccce-EEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEe
Confidence            45777777754     36889999887654432221111122 2222  2566777777553     5777887764321


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC-------CcEEEEECCCCcEEEE--EccccCCCeEEEEEcCCC
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS-------KNIALYDINSGRRLQV--FADMHKEHINVVKFSNHS  605 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D-------g~IrlWDl~s~~~v~~--l~~~h~~~V~sI~fsPdg  605 (721)
                        ....      ......-.+++. -++..++.||.+       ..+.+||+.+.+-...  +.. .......+.+  ++
T Consensus       138 --~~~~------~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~  205 (302)
T 2xn4_A          138 --HVAP------MNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMST-RRSGAGVGVL--NN  205 (302)
T ss_dssp             --EECC------CSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TT
T ss_pred             --ecCC------CCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCcc-ccccccEEEE--CC
Confidence              1110      001111112222 245555555532       4589999988764432  211 1112222333  44


Q ss_pred             CcEEEEEECC-----CcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCC-----cEEEEEcCCC
Q 004969          606 PSIFATSSFD-----QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGT-----SMFVQSLRGD  669 (721)
Q Consensus       606 ~~lLaSgs~D-----gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg-----~I~VWDl~g~  669 (721)
                       .+++.|+.+     ..+.+||+.+.+...+..........+++. .++..++.|+.++     .+.+||....
T Consensus       206 -~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          206 -LLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA-VNGLLYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             -EEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             -EEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE-ECCEEEEECCcCCCcccccEEEEcCCCC
Confidence             678888765     368999999876544332222111112222 3677777777553     4788888744

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=95.20  E-value=1.7  Score=53.69  Aligned_cols=190  Identities=13%  Similarity=0.178  Sum_probs=112.2

Q ss_pred             EEEeCCCCCEEEEEE----------CCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEc
Q 004969          459 FEYHPSISCLMVFGT----------LDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDI  528 (721)
Q Consensus       459 lafsP~dg~~LasGs----------~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi  528 (721)
                      +.|......++++|+          ..|.|+++++..++.. .+......++|++++-.  .+ +|++|- ..+|++|++
T Consensus       837 v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~-lv~~~~v~g~v~al~~~--~g-~Lla~i-g~~l~vy~l  911 (1158)
T 3ei3_A          837 CKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQ-TVAEKEVKGAVYSMVEF--NG-KLLASI-NSTVRLYEW  911 (1158)
T ss_dssp             ECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEE-EEEEEEESSCEEEEEEE--TT-EEEEEE-TTEEEEEEE
T ss_pred             EEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEE-EEEEEEcCCcCEEEeee--CC-EEEEEc-CCEEEEEEC
Confidence            344333357899987          3589999999755433 22222456889999854  45 454443 368999999


Q ss_pred             CCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEE--EECCCCcEEEEEccccCCCeEEEEEcCCCC
Q 004969          529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIAL--YDINSGRRLQVFADMHKEHINVVKFSNHSP  606 (721)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~Irl--WDl~s~~~v~~l~~~h~~~V~sI~fsPdg~  606 (721)
                      ...+.. .     .....+   ..|..+.....++.+++|..-..|.+  |+...++....-...+..+++++.|-.++ 
T Consensus       912 ~~~~~L-~-----~~~~~~---~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~-  981 (1158)
T 3ei3_A          912 TTEKEL-R-----TECNHY---NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD-  981 (1158)
T ss_dssp             CTTSCE-E-----EEEEEC---CCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT-
T ss_pred             CCCceE-E-----EEeecc---ccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccC-
Confidence            865421 1     011111   12333333346788888886555555  55555554444444467789999998665 


Q ss_pred             cEEEEEECCCcEEEEECCCC--------CceeEEEecCCCCeEEEE---EecC---------CCEEEEEeCCCcEEEE
Q 004969          607 SIFATSSFDQDVKLWDLRQK--------PIQPCYTASSSKGNVMVC---FSPD---------DHYLLGKGSGTSMFVQ  664 (721)
Q Consensus       607 ~lLaSgs~DgtIrIWDlrs~--------~~~~~~~~~~~~~~vsl~---fSpd---------g~~Lasgs~Dg~I~VW  664 (721)
                       .++.+..+|.+.+......        +......+..+....++.   +.+.         ...++-|+.+|.|.+.
T Consensus       982 -t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l 1058 (1158)
T 3ei3_A          982 -NFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLV 1058 (1158)
T ss_dssp             -EEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEE
T ss_pred             -cEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEE
Confidence             6777899999998876542        122223333333333443   2222         2346677889988654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=95.18  E-value=0.0056  Score=72.48  Aligned_cols=106  Identities=20%  Similarity=0.255  Sum_probs=52.2

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccc--cccccc--cceeeEEecccccccccccccccccccccc
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRK--LNMIGE--FKRIHTLNLDYSTSLTSFKEDCFSCMPNLI  175 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  175 (721)
                      .+|+.++|.++.+....-..+..---.=+.|+|++|++..  ...++.  +.+|++|+|+ .+.++..-...|..|++|+
T Consensus       343 ~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~-~n~l~~~~p~~l~~l~~L~  421 (768)
T 3rgz_A          343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ-NNGFTGKIPPTLSNCSELV  421 (768)
T ss_dssp             TTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECC-SSEEEEECCGGGGGCTTCC
T ss_pred             CCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECC-CCccccccCHHHhcCCCCC
Confidence            4677777777665422111111111134556666666542  222222  4456666666 5555544445555566666


Q ss_pred             hhccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969          176 CLSMCETRVGNLWTTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (721)
                      .|.|.+|++...-  -.++.++++|++|++..|
T Consensus       422 ~L~Ls~N~l~~~~--p~~l~~l~~L~~L~L~~n  452 (768)
T 3rgz_A          422 SLHLSFNYLSGTI--PSSLGSLSKLRDLKLWLN  452 (768)
T ss_dssp             EEECCSSEEESCC--CGGGGGCTTCCEEECCSS
T ss_pred             EEECcCCcccCcc--cHHHhcCCCCCEEECCCC
Confidence            6666666554211  123455555555555543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=95.15  E-value=0.0044  Score=65.97  Aligned_cols=80  Identities=19%  Similarity=0.264  Sum_probs=49.3

Q ss_pred             ceEeecccccccccc--cccccceeeEEecccccccccccccccccccccch-hccccccchhhhHHHHHhhcCCcchhh
Q 004969          127 CEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLIC-LSMCETRVGNLWTTIAALSKLPSLAEL  203 (721)
Q Consensus       127 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (721)
                      -+.|+|++|+|+.+.  .++.+++|++|+|++|.-++.++.+.|..+|+|.. |.+..|++..+  .-.++..|++|+.|
T Consensus        32 l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l--~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI--NPEAFQNLPNLQYL  109 (350)
T ss_dssp             CSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE--CTTSBCCCTTCCEE
T ss_pred             CCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc--Cchhhhhccccccc
Confidence            356777777777774  35677777777777333345566777777777665 33444555543  11345667777777


Q ss_pred             cccee
Q 004969          204 RFQNW  208 (721)
Q Consensus       204 ~~~~~  208 (721)
                      .+..+
T Consensus       110 ~l~~n  114 (350)
T 4ay9_X          110 LISNT  114 (350)
T ss_dssp             EEEEE
T ss_pred             ccccc
Confidence            66554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=95.12  E-value=0.0061  Score=64.27  Aligned_cols=109  Identities=14%  Similarity=0.132  Sum_probs=76.3

Q ss_pred             HHHHHHHHhcccceEeeccCCchhhHHHHHhhcCCc-cceEeeccccccccccc--ccccceee-EEecccccccccccc
Q 004969           90 FALSLMHAIDQKLRVVDLHDSSFGKDFIRNLSQRGL-MCEVLNLRSSRFRKLNM--IGEFKRIH-TLNLDYSTSLTSFKE  165 (721)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~-~l~~~~~~~~~~~~~  165 (721)
                      .....++..-.+|+.++|.++..  ..+.+-...|+ +=+.|+|.+| +..++-  +....+|+ +|.|. + +|+.|++
T Consensus       216 ~~~~~l~~~~~~L~~l~L~~n~i--~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~-~-~l~~I~~  290 (329)
T 3sb4_A          216 ADFKLIRDYMPNLVSLDISKTNA--TTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELP-A-SVTAIEF  290 (329)
T ss_dssp             HHHHHHHHHCTTCCEEECTTBCC--CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEEC-T-TCCEECT
T ss_pred             HHHHHHHHhcCCCeEEECCCCCc--ceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEc-c-cceEEch
Confidence            34455666678999999998532  12222233343 5577888876 655542  34556677 88887 4 8999999


Q ss_pred             cccccccccchhccccccchhhhHHHHHhhcCCcchhhcc
Q 004969          166 DCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRF  205 (721)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (721)
                      ++|..+++|+.|.+.+|+|..+-  -.|...+++|++|.|
T Consensus       291 ~aF~~c~~L~~l~l~~n~i~~I~--~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          291 GAFMGCDNLRYVLATGDKITTLG--DELFGNGVPSKLIYK  328 (329)
T ss_dssp             TTTTTCTTEEEEEECSSCCCEEC--TTTTCTTCCCCEEEC
T ss_pred             hhhhCCccCCEEEeCCCccCccc--hhhhcCCcchhhhcc
Confidence            99999999999999888887662  246778888887754

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=94.94  E-value=0.018  Score=55.51  Aligned_cols=127  Identities=13%  Similarity=0.119  Sum_probs=87.4

Q ss_pred             CCcceeeEeecCCcc-ccchHHHHHHHHHh--cccceEeeccCCchhhHHHHHhhc---CCccceEeecccccccc----
Q 004969           70 ATEIEAVDVRSGTSC-MLTGEFALSLMHAI--DQKLRVVDLHDSSFGKDFIRNLSQ---RGLMCEVLNLRSSRFRK----  139 (721)
Q Consensus        70 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----  139 (721)
                      ...+..+|+   +.| .+..+-+..+..++  |..|+.++|.++.+|.+-.+.|++   ..-.=+.|+|++|+|..    
T Consensus        35 ~~~L~~L~L---~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           35 DPDLEEVNL---NNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             CTTCCEEEC---TTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             CCCCCEEEe---cCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            355777777   456 77777766666654  788999999999998877665543   22234679999999887    


Q ss_pred             --cccccccceeeEEec--ccccccccccc----cccccccccchhccccccchhhhHHHHHhhcCCcc
Q 004969          140 --LNMIGEFKRIHTLNL--DYSTSLTSFKE----DCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSL  200 (721)
Q Consensus       140 --~~~~~~~~~~~~l~~--~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (721)
                        ...+..-..|++|+|  . .|.|+.-..    ..+...++|+.|.+.+|.|..-=--..+|.+=..|
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~-~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~~i~~~L~~N~~l  179 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQ-SQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRLRASNAMMNNNDL  179 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCC-SSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCceEEEecCC-CCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHHHHHHHHHhhHHH
Confidence              344556678999999  5 788887443    34445599999999999987441113444443333

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=94.88  E-value=2  Score=45.67  Aligned_cols=155  Identities=12%  Similarity=0.161  Sum_probs=98.2

Q ss_pred             CCeEEEEEC--CCCeEEEEeecC----CCC-CCeEEEEE--eeCCCC-EEEEEeCCCeEEEEEcCCCCCcccccccCcce
Q 004969          475 DGEIVVVNH--ENENIVSYIPSF----GAM-NSVLGLCW--LKKYPS-KLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGT  544 (721)
Q Consensus       475 DG~I~IWdl--~tg~~i~~l~~~----~H~-~~V~sl~f--sp~d~~-~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~  544 (721)
                      +++|.+|++  .++. +..+...    +.. ..+.+++.  +|..+. ++++...+|.+..|++......   .......
T Consensus        98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g---~~~~~lV  173 (355)
T 3amr_A           98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNG---YISGKKV  173 (355)
T ss_dssp             CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTS---CEEEEEE
T ss_pred             CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCC---cccceEE
Confidence            579999976  4443 4444210    011 55677777  433444 6888889999999998542110   0011223


Q ss_pred             eEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC-----CCcEEEEEcccc-CCCeEEEEEc--CCCC-cEEEEEECC
Q 004969          545 VTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDIN-----SGRRLQVFADMH-KEHINVVKFS--NHSP-SIFATSSFD  615 (721)
Q Consensus       545 ~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~-----s~~~v~~l~~~h-~~~V~sI~fs--Pdg~-~lLaSgs~D  615 (721)
                      ..+....++..+...+..+.++++-.+.-|..+|.+     +++.+..+..++ ...+..+++-  +++. .+++++-.+
T Consensus       174 R~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~  253 (355)
T 3amr_A          174 RAFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGN  253 (355)
T ss_dssp             EEEECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGG
T ss_pred             EEecCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCC
Confidence            455556788899998889999999998778888865     345565553222 2478888884  5543 355555467


Q ss_pred             CcEEEEECC-CCCceeEEE
Q 004969          616 QDVKLWDLR-QKPIQPCYT  633 (721)
Q Consensus       616 gtIrIWDlr-s~~~~~~~~  633 (721)
                      .+..+||.. +.+....+.
T Consensus       254 ~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          254 SSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             TEEEEEESSTTCCEEEEEE
T ss_pred             CEEEEEECCCCCcEEEEEE
Confidence            899999997 444444443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=94.87  E-value=0.017  Score=66.18  Aligned_cols=55  Identities=13%  Similarity=0.191  Sum_probs=30.6

Q ss_pred             ceEeeccccccccccccccccee-------eEEecccccccccccccccccccccchhccccccch
Q 004969          127 CEVLNLRSSRFRKLNMIGEFKRI-------HTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVG  185 (721)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (721)
                      =+.|+|++|+|..+..++.  +|       ++|+|+ +|.|+.|++..|. ||+|+.|.|.+|.+.
T Consensus       182 L~~L~Ls~N~L~~lp~~~~--~L~~~~~~L~~L~Ls-~N~l~~lp~~l~~-l~~L~~L~L~~N~l~  243 (571)
T 3cvr_A          182 LEALDVSTNLLESLPAVPV--RNHHSEETEIFFRCR-ENRITHIPENILS-LDPTCTIILEDNPLS  243 (571)
T ss_dssp             CCEEECCSSCCSSCCCCC----------CCEEEECC-SSCCCCCCGGGGG-SCTTEEEECCSSSCC
T ss_pred             CCEEECcCCCCCchhhHHH--hhhcccccceEEecC-CCcceecCHHHhc-CCCCCEEEeeCCcCC
Confidence            3446666665555444322  45       666666 5566666665555 666666666666664

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=94.73  E-value=1  Score=49.21  Aligned_cols=144  Identities=15%  Similarity=0.220  Sum_probs=92.7

Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEec---cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc--
Q 004969          509 KYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFD---EFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR--  583 (721)
Q Consensus       509 ~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~---~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~--  583 (721)
                      .++..++.+- ++.||.-++.... .++       .....   ....|..+..+|+|.+++..|. ..|.|-.+..+.  
T Consensus        30 ~n~t~i~~a~-~n~iR~~~i~~~~-~Yk-------~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~   99 (452)
T 3pbp_A           30 QNGTRIVFIQ-DNIIRWYNVLTDS-LYH-------SLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSN   99 (452)
T ss_dssp             TTTTEEEEEE-TTEEEEEETTTCS-SCE-------EEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSC
T ss_pred             cCCCEEEEEE-CCEEEEEECCCCC-cce-------EEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCcccc
Confidence            4555555543 4688877776422 111       11222   1235788999999998888764 578888887321  


Q ss_pred             ----------EEEEEccc-----cCCCeEEEEEcCCCC--cEEEEEECCCcEEEEECCCCCceeEEEec---------CC
Q 004969          584 ----------RLQVFADM-----HKEHINVVKFSNHSP--SIFATSSFDQDVKLWDLRQKPIQPCYTAS---------SS  637 (721)
Q Consensus       584 ----------~v~~l~~~-----h~~~V~sI~fsPdg~--~lLaSgs~DgtIrIWDlrs~~~~~~~~~~---------~~  637 (721)
                                ..+.+.-+     ...+|..+.|||-+.  ..+++-..|++||+||+......|. .+.         ..
T Consensus       100 ~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~  178 (452)
T 3pbp_A          100 VEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDAR  178 (452)
T ss_dssp             CCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSS
T ss_pred             CcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcc
Confidence                      12233311     246799999999873  3889999999999999987433333 221         11


Q ss_pred             -CCeEEEEEecCCCEEEEEe--CCCcEEE
Q 004969          638 -KGNVMVCFSPDDHYLLGKG--SGTSMFV  663 (721)
Q Consensus       638 -~~~vsl~fSpdg~~Lasgs--~Dg~I~V  663 (721)
                       ..+.+++|.++|-.|...+  .+|.|+-
T Consensus       179 ~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          179 VNDITDLEFSKDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             CCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred             cceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence             2233899999887777755  7787763

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=94.63  E-value=1.3  Score=45.16  Aligned_cols=188  Identities=12%  Similarity=0.102  Sum_probs=99.1

Q ss_pred             CCCEEEEEECC----CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC------CeEEEEEcCCCCCc
Q 004969          465 ISCLMVFGTLD----GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN------GSLKLYDIRHMPPS  534 (721)
Q Consensus       465 dg~~LasGs~D----G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D------GtVrIWDi~~~~~~  534 (721)
                      ++.+++.|+.+    ..+.+||..+++....-......... +++.  .++..++.|+.+      ..+.+||..+..-.
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~  131 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSL-AACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWH  131 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSC-EEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccce-eEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceE
Confidence            55777888755    67899999887654432221111122 2222  256677777765      45888888775421


Q ss_pred             ccccccCcceeEeccCCC-eEEEEEecCCCEEEEEeC---------CCcEEEEECCCCcEEEEEccccC-CCeEEEEEcC
Q 004969          535 IRGMHYGAGTVTFDEFDQ-LTSVHVNSMDELFLASGY---------SKNIALYDINSGRRLQVFADMHK-EHINVVKFSN  603 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~-V~sv~~sp~~~~lls~g~---------Dg~IrlWDl~s~~~v~~l~~~h~-~~V~sI~fsP  603 (721)
                      .  ...      ...... -..+.+  ++..++.||.         -..+.+||+.+.+-...-.-... .....+.+  
T Consensus       132 ~--~~~------~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--  199 (306)
T 3ii7_A          132 T--KPS------MLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--  199 (306)
T ss_dssp             E--ECC------CSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--
T ss_pred             e--CCC------CcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--
Confidence            1  110      000011 122222  4555555553         34588999998754332111011 11222223  


Q ss_pred             CCCcEEEEEECC-----CcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEEcCCC
Q 004969          604 HSPSIFATSSFD-----QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG-----TSMFVQSLRGD  669 (721)
Q Consensus       604 dg~~lLaSgs~D-----gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D-----g~I~VWDl~g~  669 (721)
                      ++ .+++.|+.+     ..+.+||+.+.+...+..++......+++.. ++..++.|+.+     ..+.+||....
T Consensus       200 ~~-~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          200 KD-KIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV-GSIVYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             TT-EEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE-TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred             CC-EEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE-CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence            44 677777654     4589999998755443322221111222222 67777778754     46788888754

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=94.61  E-value=0.03  Score=63.35  Aligned_cols=126  Identities=17%  Similarity=0.283  Sum_probs=71.7

Q ss_pred             cceeeEeecCCccccchHHHHHHHHHhcccceEeeccCC-chhhHHHHHhhcCCccceEeecccccccccc------ccc
Q 004969           72 EIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDS-SFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN------MIG  144 (721)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~  144 (721)
                      .++.+|+..   |.+.++-.-.+.+.. .+|+.++|... .++...+..+...--.=+.|+|+.|.|...+      +..
T Consensus       106 ~L~~L~L~~---~~~~~~~~~~l~~~~-~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  181 (594)
T 2p1m_B          106 WLEEIRLKR---MVVTDDCLELIAKSF-KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD  181 (594)
T ss_dssp             TCCEEEEES---CBCCHHHHHHHHHHC-TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred             CCCeEEeeC---cEEcHHHHHHHHHhC-CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence            566666643   345555444444333 47888888776 5666556666543334466788777755422      222


Q ss_pred             ccceeeEEeccccccccccccccc----ccccccchhccccc-cchhhhHHHHHhhcCCcchhhccc
Q 004969          145 EFKRIHTLNLDYSTSLTSFKEDCF----SCMPNLICLSMCET-RVGNLWTTIAALSKLPSLAELRFQ  206 (721)
Q Consensus       145 ~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  206 (721)
                      .+++|++|+|.++.  +.+....+    ..+|+|+.|.+.++ .+..   -...+.++++|++|.+.
T Consensus       182 ~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~---l~~~~~~~~~L~~L~l~  243 (594)
T 2p1m_B          182 TYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEK---LATLLQRAPQLEELGTG  243 (594)
T ss_dssp             TCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHH---HHHHHHHCTTCSEEECS
T ss_pred             cCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHH---HHHHHhcCCcceEcccc
Confidence            55678888887554  22332222    33588888888776 3333   22345566777777543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=94.39  E-value=2.5  Score=46.14  Aligned_cols=151  Identities=11%  Similarity=0.107  Sum_probs=96.8

Q ss_pred             CCCEEEEEECCCeEEEEECCCCeEEEEeecCC--CCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccc--c
Q 004969          465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFG--AMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMH--Y  540 (721)
Q Consensus       465 dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~--H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~--~  540 (721)
                      ++..++.+- ++.||.-++..+...+.+....  .-..|..+..+ ++|++|+..+. ..|.|-.+..+........  .
T Consensus        31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlS-psG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~  107 (452)
T 3pbp_A           31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISS-TSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQD  107 (452)
T ss_dssp             TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEEC-TTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHH
T ss_pred             CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEEC-CCCCEEEEecC-CeEEEEEecCccccCccccccc
Confidence            667777665 5788888887555555555432  12357778887 78888888765 4899999884332111000  1


Q ss_pred             CcceeEec-------cCCCeEEEEEecC---CCEEEEEeCCCcEEEEECCCC--cEEEEEcc--------ccCCCeEEEE
Q 004969          541 GAGTVTFD-------EFDQLTSVHVNSM---DELFLASGYSKNIALYDINSG--RRLQVFAD--------MHKEHINVVK  600 (721)
Q Consensus       541 ~~~~~~~~-------~~~~V~sv~~sp~---~~~lls~g~Dg~IrlWDl~s~--~~v~~l~~--------~h~~~V~sI~  600 (721)
                      ......+.       ...+|..+.|||-   +..+++-..|+.||+||+...  ++. .+..        .....|.+++
T Consensus       108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~  186 (452)
T 3pbp_A          108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLE  186 (452)
T ss_dssp             TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEE
T ss_pred             ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEE
Confidence            11111111       2467999999996   468999999999999999852  233 3331        1226788999


Q ss_pred             EcCCCCcEEEEEE--CCCcEEE
Q 004969          601 FSNHSPSIFATSS--FDQDVKL  620 (721)
Q Consensus       601 fsPdg~~lLaSgs--~DgtIrI  620 (721)
                      |.+++ -.+...+  ..|.|+-
T Consensus       187 Fg~~~-lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          187 FSKDG-LTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             ECTTS-SCEEEEECTTSCEEEE
T ss_pred             EcCCC-cEEEEEecCCCCCEEE
Confidence            99976 5555544  6777754

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=94.15  E-value=1.8  Score=43.95  Aligned_cols=189  Identities=13%  Similarity=0.147  Sum_probs=97.6

Q ss_pred             CCCEEEEEE-CC-----CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC-----CeEEEEEcCCCCC
Q 004969          465 ISCLMVFGT-LD-----GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN-----GSLKLYDIRHMPP  533 (721)
Q Consensus       465 dg~~LasGs-~D-----G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D-----GtVrIWDi~~~~~  533 (721)
                      ++.+++.|+ .+     ..+.+||..+++....-......... +++.  .++..++.|+.+     ..+.+||..+...
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~   90 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYV-ASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADED   90 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSC-EEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccc-cEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCC
Confidence            445666666 32     47889999877654322111111112 2222  256677777755     4688899887651


Q ss_pred             -cccccccCcceeEeccCC-CeEEEEEecCCCEEEEEeCC-----CcEEEEECCCCcEEEE--EccccCCCeEEEEEcCC
Q 004969          534 -SIRGMHYGAGTVTFDEFD-QLTSVHVNSMDELFLASGYS-----KNIALYDINSGRRLQV--FADMHKEHINVVKFSNH  604 (721)
Q Consensus       534 -~~~~~~~~~~~~~~~~~~-~V~sv~~sp~~~~lls~g~D-----g~IrlWDl~s~~~v~~--l~~~h~~~V~sI~fsPd  604 (721)
                       ....+..      ..... ....+.+  ++..++.||.+     ..+.+||+.+.+-...  +.. .......+.+  +
T Consensus        91 ~~W~~~~~------~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~--~  159 (301)
T 2vpj_A           91 GVWYSVAP------MNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQT-AREGAGLVVA--S  159 (301)
T ss_dssp             CCCEEECC------CSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSS-CCBSCEEEEE--T
T ss_pred             CeeEECCC------CCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCC-CcccceEEEE--C
Confidence             0111110      00011 1122222  45556666543     4689999987764332  221 1111222223  4


Q ss_pred             CCcEEEEEECC-----CcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEEcCCC
Q 004969          605 SPSIFATSSFD-----QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG-----TSMFVQSLRGD  669 (721)
Q Consensus       605 g~~lLaSgs~D-----gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D-----g~I~VWDl~g~  669 (721)
                      + .+++.|+.+     ..+.+||+.+.+...+...+......+++. -++..++.|+.+     ..+.+||+...
T Consensus       160 ~-~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~  232 (301)
T 2vpj_A          160 G-VIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTD  232 (301)
T ss_dssp             T-EEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             C-EEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCC
Confidence            5 677777765     458999998876544422222111112222 256777777654     46888998744

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.52  E-value=3.6  Score=45.25  Aligned_cols=112  Identities=15%  Similarity=0.305  Sum_probs=62.3

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEE--EeecC----CCCCCeEEEEEeeC---CCCEEEEEeC------
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVS--YIPSF----GAMNSVLGLCWLKK---YPSKLIAGSD------  519 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~--~l~~~----~H~~~V~sl~fsp~---d~~~LaSgs~------  519 (721)
                      .++.++|.| ++.++++-...+.|++++..++....  .+...    .......+|+|+|.   ++.+.++-+.      
T Consensus        28 ~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           28 KPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            488999999 88877765444579988876565432  22210    12467889999843   4444444332      


Q ss_pred             ------CCeEEEEEcCCCCCcccccccCcceeE-ec--cCCCeEEEEEecCCCEEEEEeC
Q 004969          520 ------NGSLKLYDIRHMPPSIRGMHYGAGTVT-FD--EFDQLTSVHVNSMDELFLASGY  570 (721)
Q Consensus       520 ------DGtVrIWDi~~~~~~~~~~~~~~~~~~-~~--~~~~V~sv~~sp~~~~lls~g~  570 (721)
                            ...|.-|+.......+..   ...... +.  .......++|.|++..+++.|.
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~---~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEK---PVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEE---EEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             ccccccccEEEEEEECCCCCCcCC---cEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                  234555555432211100   000110 11  1123688999999988887664

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=93.36  E-value=2.6  Score=42.81  Aligned_cols=187  Identities=9%  Similarity=0.031  Sum_probs=96.7

Q ss_pred             CCEEEEEEC--CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC----CeEEEEEcCCCCCcccccc
Q 004969          466 SCLMVFGTL--DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN----GSLKLYDIRHMPPSIRGMH  539 (721)
Q Consensus       466 g~~LasGs~--DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D----GtVrIWDi~~~~~~~~~~~  539 (721)
                      +.+++.|+.  ...+.+||..+++....-...........+.   .++..++.|+.+    ..+.+||..+..-.  .+.
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~---~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~--~~~   86 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF---WDNVVYILGGSQLFPIKRMDCYNVVKDSWY--SKL   86 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE---ETTEEEEECCBSSSBCCEEEEEETTTTEEE--EEE
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE---ECCEEEEEeCCCCCCcceEEEEeCCCCeEE--ECC
Confidence            456667765  3578999998876543221111111222222   255667777754    57888888775421  111


Q ss_pred             cCcceeEeccCC-CeEEEEEecCCCEEEEEeCC------CcEEEEECCCCcEEEEEcccc-CCCeEEEEEcCCCCcEEEE
Q 004969          540 YGAGTVTFDEFD-QLTSVHVNSMDELFLASGYS------KNIALYDINSGRRLQVFADMH-KEHINVVKFSNHSPSIFAT  611 (721)
Q Consensus       540 ~~~~~~~~~~~~-~V~sv~~sp~~~~lls~g~D------g~IrlWDl~s~~~v~~l~~~h-~~~V~sI~fsPdg~~lLaS  611 (721)
                      .      ..... ....+.+  ++..++.||.+      ..+.+||..+.+-...-.-.. ......+.+  ++ .+++.
T Consensus        87 ~------~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~  155 (306)
T 3ii7_A           87 G------PPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NG-LIYVC  155 (306)
T ss_dssp             C------CSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEEEE
T ss_pred             C------CCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CC-EEEEE
Confidence            0      00111 1122222  55566666654      468999999876433211101 111222222  44 67777


Q ss_pred             EEC---------CCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEEcCCC
Q 004969          612 SSF---------DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG-----TSMFVQSLRGD  669 (721)
Q Consensus       612 gs~---------DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D-----g~I~VWDl~g~  669 (721)
                      |+.         -..+.+||+.+.....+..+.......+++.. +++.++.|+.+     ..+.+||+...
T Consensus       156 GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~  226 (306)
T 3ii7_A          156 GGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLN  226 (306)
T ss_dssp             CCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred             CCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence            654         34588999998765444322221111123332 66677776643     35788888744

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=93.28  E-value=1.9  Score=45.71  Aligned_cols=147  Identities=8%  Similarity=0.066  Sum_probs=82.0

Q ss_pred             CCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecC---CCEEEEEeC----C
Q 004969          499 NSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSM---DELFLASGY----S  571 (721)
Q Consensus       499 ~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~---~~~lls~g~----D  571 (721)
                      ....+|+|. ++++ |+.+..+|.|+++|... ...+..+.     +..........++++|+   ++.++++..    +
T Consensus        29 ~~P~~ia~~-pdG~-l~V~e~~g~I~~~d~~G-~~~~~~~~-----v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~  100 (354)
T 3a9g_A           29 EVPWSIAPL-GGGR-YLVTERPGRLVLISPSG-KKLVASFD-----VANVGEAGLLGLALHPEFPKKSWVYLYASYFAEG  100 (354)
T ss_dssp             SCEEEEEEE-ETTE-EEEEETTTEEEEECSSC-EEEEEECC-----CCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGG
T ss_pred             CCCeEEEEc-CCCe-EEEEeCCCEEEEEeCCC-ceEeeccc-----eeecCCCceeeEEeCCCCCcCCEEEEEEeccCCC
Confidence            457889998 4666 55556679999987432 21111100     11112345789999997   566665543    3


Q ss_pred             ----CcEEEEECCCC--c-----EE-EEEccccCCCeEEEEEcCCCCcEEEEEEC-------------CCcEEEEECCCC
Q 004969          572 ----KNIALYDINSG--R-----RL-QVFADMHKEHINVVKFSNHSPSIFATSSF-------------DQDVKLWDLRQK  626 (721)
Q Consensus       572 ----g~IrlWDl~s~--~-----~v-~~l~~~h~~~V~sI~fsPdg~~lLaSgs~-------------DgtIrIWDlrs~  626 (721)
                          ..|..|+...+  .     .+ ..+..........++|.|+| .++++-+.             .|.|.-++....
T Consensus       101 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG-~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~  179 (354)
T 3a9g_A          101 GHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDG-MLYITTGDAADPRLAQDLSSLAGKILRVDEEGR  179 (354)
T ss_dssp             GCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTS-CEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC
T ss_pred             CCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCC-cEEEEECCCCCCccccCCCCCCeEEEEEcCCCC
Confidence                56778887644  1     11 11221112234679999999 66666432             245555555432


Q ss_pred             C-------ceeEEEecCCCCeEEEEEec-CCCEEEEE
Q 004969          627 P-------IQPCYTASSSKGNVMVCFSP-DDHYLLGK  655 (721)
Q Consensus       627 ~-------~~~~~~~~~~~~~vsl~fSp-dg~~Lasg  655 (721)
                      .       ...++ ..++..+..++|+| +|+.+++-
T Consensus       180 ~p~~npf~~~~i~-a~G~rnp~Gla~d~~~g~l~v~d  215 (354)
T 3a9g_A          180 PPADNPFPNSPIW-SYGHRNPQGIDWHRASGVMVATE  215 (354)
T ss_dssp             CCTTSSSTTCCEE-EECCSCCCEEEECTTTCCEEEEE
T ss_pred             CCCCCCCCCCcEE-EEccCCcceEEEeCCCCCEEEEe
Confidence            0       01122 23555666899999 67666553

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=93.24  E-value=0.075  Score=57.12  Aligned_cols=59  Identities=19%  Similarity=0.320  Sum_probs=31.0

Q ss_pred             ccceeeEEecccccc-------ccccccccc-ccccccchhccccccchhhhHHHHHhh---cCCcchhhcc
Q 004969          145 EFKRIHTLNLDYSTS-------LTSFKEDCF-SCMPNLICLSMCETRVGNLWTTIAALS---KLPSLAELRF  205 (721)
Q Consensus       145 ~~~~~~~l~~~~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  205 (721)
                      .++.|++|+|.++..       +..+..-.- ..+|+|+.|.+++|.|.+..  ..++.   -+|.|++|.+
T Consensus       217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~--~~~la~a~~~~~L~~LdL  286 (362)
T 2ra8_A          217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVV--VEMFLESDILPQLETMDI  286 (362)
T ss_dssp             BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHH--HHHHHHCSSGGGCSEEEC
T ss_pred             cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHH--HHHHHhCccCCCCCEEEC
Confidence            566777777654211       222222111 24677777777777776532  23333   3556666654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=93.15  E-value=10  Score=40.24  Aligned_cols=168  Identities=13%  Similarity=0.183  Sum_probs=92.0

Q ss_pred             CCCeEEEEEcCCCCCcccccccCcceeEec-cCCCeEEEEEec--CCC-EEEEEe-C--CCcEEEEECCCCc----EEEE
Q 004969          519 DNGSLKLYDIRHMPPSIRGMHYGAGTVTFD-EFDQLTSVHVNS--MDE-LFLASG-Y--SKNIALYDINSGR----RLQV  587 (721)
Q Consensus       519 ~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~-~~~~V~sv~~sp--~~~-~lls~g-~--Dg~IrlWDl~s~~----~v~~  587 (721)
                      .+|.|.++|..+.......+.....  .+. ..-....+.+.+  ++. +++++. .  +.+|.+|++..+.    .+..
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~--~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~  158 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGN--TLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKT  158 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECS--SCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEE
T ss_pred             CCCeEEEEecCCCCCceEEEEccCC--CCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEec
Confidence            6889999998753221111110000  000 112346666655  333 455553 2  4678888776432    2334


Q ss_pred             EccccCCCeEEEEEcCCCCcEEEEEEC-----------------CCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCC
Q 004969          588 FADMHKEHINVVKFSNHSPSIFATSSF-----------------DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDH  650 (721)
Q Consensus       588 l~~~h~~~V~sI~fsPdg~~lLaSgs~-----------------DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~  650 (721)
                      +.+..-...+.+.+.++| .+.++...                 .|.|.-+|.  ++...  ...+-..+..++||||++
T Consensus       159 ~~g~~~~~pND~~v~~~G-~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~--~~~~l~~pNGia~spDg~  233 (355)
T 3sre_A          159 IRHKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRV--VAEGFDFANGINISPDGK  233 (355)
T ss_dssp             ECCTTCSSEEEEEEEETT-EEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCEE--EEEEESSEEEEEECTTSS
T ss_pred             cccCCCCCCceEEEeCCC-CEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEEE--eecCCcccCcceECCCCC
Confidence            443234568899999998 66666531                 234444554  33222  223334455799999999


Q ss_pred             EEEEEe-CCCcEEEEEcCCC-ccc-----ccccCeEEEEECC-CCCcccccccEEEEe
Q 004969          651 YLLGKG-SGTSMFVQSLRGD-PFR-----DFNMSILAAYTRP-SSKSEIVKVNLLAST  700 (721)
Q Consensus       651 ~Lasgs-~Dg~I~VWDl~g~-~l~-----~~~~~V~~v~fsP-~~~~~~v~v~lLASg  700 (721)
                      +++.+. ..+.|+.|++... .+.     ......-.++..+ ++       ++.+++
T Consensus       234 ~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G-------~lwva~  284 (355)
T 3sre_A          234 YVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTG-------DLWVGC  284 (355)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTC-------CEEEEE
T ss_pred             EEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCC-------cEEEEe
Confidence            887765 5678999998632 111     1233455567777 47       666644

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=93.04  E-value=0.53  Score=50.04  Aligned_cols=154  Identities=10%  Similarity=0.089  Sum_probs=86.7

Q ss_pred             CCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEe--eCCCCEEEEE-eCCCeEEEEEcCCCCCcccccccCc
Q 004969          466 SCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWL--KKYPSKLIAG-SDNGSLKLYDIRHMPPSIRGMHYGA  542 (721)
Q Consensus       466 g~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fs--p~d~~~LaSg-s~DGtVrIWDi~~~~~~~~~~~~~~  542 (721)
                      +.+++.++.||.|.-+|.++|+....++.. ...++....-.  +.++..++.. +.||.|..++..++...... .  .
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~-~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~-~--~   85 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPE-NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPL-S--I   85 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGG-GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEE-E--H
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCC-ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeee-c--c
Confidence            357899999999999999999999988753 21233322110  0122333333 58999999998775331100 0  0


Q ss_pred             ceeEeccCCCeEE--------EEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCC------eEEEEEc---C-C
Q 004969          543 GTVTFDEFDQLTS--------VHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEH------INVVKFS---N-H  604 (721)
Q Consensus       543 ~~~~~~~~~~V~s--------v~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~------V~sI~fs---P-d  604 (721)
                        .......++..        .--...++.+++++.+|.+...|+++|+.++++..+....      ..|....   . .
T Consensus        86 --~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~  163 (339)
T 2be1_A           86 --RQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQE  163 (339)
T ss_dssp             --HHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-------------------
T ss_pred             --ccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccccccccccc
Confidence              00001111111        0000156788999999999999999999999997422111      1111111   0 1


Q ss_pred             CCcEEEEEECCCcEEEEECCCC
Q 004969          605 SPSIFATSSFDQDVKLWDLRQK  626 (721)
Q Consensus       605 g~~lLaSgs~DgtIrIWDlrs~  626 (721)
                      ....++.|..+..+.+.+ +++
T Consensus       164 ~~~~v~ig~~~y~v~~~~-~sG  184 (339)
T 2be1_A          164 CENMIVIGKTIFELGIHS-YDG  184 (339)
T ss_dssp             -CCEEEEEEEEEECEECC-TTS
T ss_pred             CCCeEEEecceEEEEEEC-CCC
Confidence            114677777777777766 444

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=93.02  E-value=11  Score=40.02  Aligned_cols=238  Identities=12%  Similarity=0.128  Sum_probs=127.8

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEE--Eeec--CCCCCCeEEEEEeeC--CCCEEEEE-e--CCCeEEE
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVS--YIPS--FGAMNSVLGLCWLKK--YPSKLIAG-S--DNGSLKL  525 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~--~l~~--~~H~~~V~sl~fsp~--d~~~LaSg-s--~DGtVrI  525 (721)
                      .++.|+|.| ++.++++-...|.|++++..++....  .+..  .........|+++|.  .+..|+.. +  .++.|.-
T Consensus        33 ~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R  111 (347)
T 3das_A           33 SPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR  111 (347)
T ss_dssp             SEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred             CceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence            489999999 88877776558999999876665422  2210  123467899999852  13344332 2  4455666


Q ss_pred             EEcCCCCCcccccccCcceeE-ec--cCCCeEEEEEecCCCEEEEEeC-------------CCcEEEEECCCCc------
Q 004969          526 YDIRHMPPSIRGMHYGAGTVT-FD--EFDQLTSVHVNSMDELFLASGY-------------SKNIALYDINSGR------  583 (721)
Q Consensus       526 WDi~~~~~~~~~~~~~~~~~~-~~--~~~~V~sv~~sp~~~~lls~g~-------------Dg~IrlWDl~s~~------  583 (721)
                      |...........+........ +.  ....-..+.|.|++..+++.|.             .|.|.-.+....-      
T Consensus       112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf  191 (347)
T 3das_A          112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPF  191 (347)
T ss_dssp             EEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSS
T ss_pred             EEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCC
Confidence            666542210000000011110 11  1112467899999887777653             2445545544210      


Q ss_pred             -EEEEEccccCCCeEEEEEcCCCCcEEEEE-ECCCcEEEEECCCCC----------------ceeEEEecCC-CCeEEEE
Q 004969          584 -RLQVFADMHKEHINVVKFSNHSPSIFATS-SFDQDVKLWDLRQKP----------------IQPCYTASSS-KGNVMVC  644 (721)
Q Consensus       584 -~v~~l~~~h~~~V~sI~fsPdg~~lLaSg-s~DgtIrIWDlrs~~----------------~~~~~~~~~~-~~~vsl~  644 (721)
                       ....+..+|.. ...++|+|+| .++++- +.|+.=.|--+..+.                ..++..+..+ ..+..++
T Consensus       192 ~~~~i~a~G~RN-p~Gla~dp~G-~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~  269 (347)
T 3das_A          192 PGSPVYSYGHRN-VQGLAWDDKQ-RLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIA  269 (347)
T ss_dssp             TTCCEEEBCCSB-CCEEEECTTC-CEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEE
T ss_pred             CCCeEEeeCCCC-cceEEECCCC-CEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceE
Confidence             01122222443 4679999987 555543 334333333333221                1233444333 3555677


Q ss_pred             EecCCCEEEEEeCCCcEEEEEcCCCc--------ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          645 FSPDDHYLLGKGSGTSMFVQSLRGDP--------FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       645 fSpdg~~Lasgs~Dg~I~VWDl~g~~--------l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      |. +|..++..-..+.|....+.+..        +......+..+...|++       .++++.+..
T Consensus       270 ~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG-------~lyv~td~~  328 (347)
T 3das_A          270 YA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGD-------KLWLVTSNT  328 (347)
T ss_dssp             EE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETT-------EEEEEECTT
T ss_pred             EE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCC-------cEEEEEcCC
Confidence            76 46666655555666666665321        11123578899999999       887776655

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=93.01  E-value=0.06  Score=60.88  Aligned_cols=108  Identities=13%  Similarity=0.114  Sum_probs=49.1

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeecc----ccccccc-------ccccccceeeEEecccccc-cccccc-c
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLR----SSRFRKL-------NMIGEFKRIHTLNLDYSTS-LTSFKE-D  166 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-------~~~~~~~~~~~l~~~~~~~-~~~~~~-~  166 (721)
                      .+|+.++|..+.+....+..+.+.--+=+.|+|+    +|++..+       .++..+++|++|+|.+|.. ++.-.- .
T Consensus       378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~  457 (592)
T 3ogk_B          378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY  457 (592)
T ss_dssp             TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred             ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence            5666666655556666666555432233456663    4444432       1123355555555544332 221111 1


Q ss_pred             ccccccccchhccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969          167 CFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (721)
                      -...+|+|+.|.+..|++.+. .-.+.+..+++|++|.+..|
T Consensus       458 ~~~~~~~L~~L~L~~n~l~~~-~~~~~~~~~~~L~~L~l~~n  498 (592)
T 3ogk_B          458 IGQYSPNVRWMLLGYVGESDE-GLMEFSRGCPNLQKLEMRGC  498 (592)
T ss_dssp             HHHSCTTCCEEEECSCCSSHH-HHHHHHTCCTTCCEEEEESC
T ss_pred             HHHhCccceEeeccCCCCCHH-HHHHHHhcCcccCeeeccCC
Confidence            112345555555555555431 11122344555555555444

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=92.98  E-value=1.8  Score=44.25  Aligned_cols=187  Identities=12%  Similarity=0.098  Sum_probs=95.8

Q ss_pred             CCCEEEEEEC----C-----CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC-----CeEEEEEcCC
Q 004969          465 ISCLMVFGTL----D-----GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN-----GSLKLYDIRH  530 (721)
Q Consensus       465 dg~~LasGs~----D-----G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D-----GtVrIWDi~~  530 (721)
                      ++.+++.|+.    +     ..+.+||..+.+....-.......... ++.  .++..++.|+.+     ..+.+||..+
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~-~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~  146 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG-VGV--IDGHIYAVGGSHGCIHHNSVERYEPER  146 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE-EEE--ETTEEEEECCEETTEECCCEEEEETTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccE-EEE--ECCEEEEEcCCCCCcccccEEEECCCC
Confidence            4567777765    2     468899998776543222111111222 222  245666666643     3577888876


Q ss_pred             CCCcccccccCcceeEeccCC-CeEEEEEecCCCEEEEEeCC-----CcEEEEECCCCcEEEE--EccccCCCeEEEEEc
Q 004969          531 MPPSIRGMHYGAGTVTFDEFD-QLTSVHVNSMDELFLASGYS-----KNIALYDINSGRRLQV--FADMHKEHINVVKFS  602 (721)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~~~-~V~sv~~sp~~~~lls~g~D-----g~IrlWDl~s~~~v~~--l~~~h~~~V~sI~fs  602 (721)
                      ..-.  ....      ..... .-..+.+  ++..++.||.+     ..+.+||+.+.+-...  +.. .......+.+ 
T Consensus       147 ~~W~--~~~~------~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~-  214 (308)
T 1zgk_A          147 DEWH--LVAP------MLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNT-IRSGAGVCVL-  214 (308)
T ss_dssp             TEEE--ECCC------CSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEEE-
T ss_pred             CeEe--ECCC------CCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCC-ccccceEEEE-
Confidence            4321  1110      00001 1122222  55566666643     4689999987754322  111 1112223333 


Q ss_pred             CCCCcEEEEEECC-----CcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEEcCCC
Q 004969          603 NHSPSIFATSSFD-----QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG-----TSMFVQSLRGD  669 (721)
Q Consensus       603 Pdg~~lLaSgs~D-----gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D-----g~I~VWDl~g~  669 (721)
                       ++ .+++.|+.+     ..+.+||+.+.+...+..++......+++. -+++.++.|+.+     ..+.+||+...
T Consensus       215 -~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          215 -HN-CIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             -TT-EEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             -CC-EEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence             44 678888765     569999999875543332222111112232 266777777654     35677777643

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=92.88  E-value=2.7  Score=42.59  Aligned_cols=187  Identities=13%  Similarity=0.149  Sum_probs=94.9

Q ss_pred             CCEEEEEECC----CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC-----CeEEEEEcCCCCCccc
Q 004969          466 SCLMVFGTLD----GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN-----GSLKLYDIRHMPPSIR  536 (721)
Q Consensus       466 g~~LasGs~D----G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D-----GtVrIWDi~~~~~~~~  536 (721)
                      +.+++.|+.+    ..+..||..+++....-........ .+++.  .++..++.|+.+     ..+.+||..+.+-.  
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~--   90 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCR-AGMVY--MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWT--   90 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEE--ETTEEEEESCBCSSSBCCCEEEEETTTTEEE--
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCccccc-ceEEE--ECCEEEEEeCcCCCccccceEEECCCCCcee--
Confidence            3556666643    4688899887764433111111111 12222  256667777754     35778888764321  


Q ss_pred             ccccCcceeEeccCC-CeEEEEEecCCCEEEEEeCC-----CcEEEEECCCCcEEEEEcccc-CCCeEEEEEcCCCCcEE
Q 004969          537 GMHYGAGTVTFDEFD-QLTSVHVNSMDELFLASGYS-----KNIALYDINSGRRLQVFADMH-KEHINVVKFSNHSPSIF  609 (721)
Q Consensus       537 ~~~~~~~~~~~~~~~-~V~sv~~sp~~~~lls~g~D-----g~IrlWDl~s~~~v~~l~~~h-~~~V~sI~fsPdg~~lL  609 (721)
                      .+..      ..... ....+.+  ++..++.||.+     ..+.+||+.+.+-...-.-.. ......+.+  ++ .++
T Consensus        91 ~~~~------~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iy  159 (302)
T 2xn4_A           91 SVAN------MRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GG-LLY  159 (302)
T ss_dssp             EECC------CSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEE
T ss_pred             eCCC------CCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CC-EEE
Confidence            1110      00011 1122222  56666777754     358899998776443211101 111222222  44 677


Q ss_pred             EEEECC-------CcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEEcCCC
Q 004969          610 ATSSFD-------QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG-----TSMFVQSLRGD  669 (721)
Q Consensus       610 aSgs~D-------gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D-----g~I~VWDl~g~  669 (721)
                      +.|+.+       ..+.+||+.+.....+...+......+++. -++..++.|+.+     +.+.+||....
T Consensus       160 v~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~  230 (302)
T 2xn4_A          160 AVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTN  230 (302)
T ss_dssp             EECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTT
T ss_pred             EEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCC
Confidence            777643       358899998876544332222211112222 267777777654     36888888744

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=92.70  E-value=2.1  Score=43.96  Aligned_cols=189  Identities=12%  Similarity=0.127  Sum_probs=95.0

Q ss_pred             CCCEEEEEEC-----C------CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC--------CeEEE
Q 004969          465 ISCLMVFGTL-----D------GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN--------GSLKL  525 (721)
Q Consensus       465 dg~~LasGs~-----D------G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D--------GtVrI  525 (721)
                      ++.+++.|+.     .      ..+.+||..+++....-........ .+++.  .++..++.|+.+        ..+.+
T Consensus        45 ~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~  121 (315)
T 4asc_A           45 ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCL-FGLGE--ALNSIYVVGGREIKDGERCLDSVMC  121 (315)
T ss_dssp             TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEES-CEEEE--ETTEEEEECCEESSTTCCBCCCEEE
T ss_pred             CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhc-eeEEE--ECCEEEEEeCCcCCCCCcccceEEE
Confidence            6678888873     1      2377889888765332111111111 12222  245666666632        45888


Q ss_pred             EEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-C-----CcEEEEECCCCcEEEEEcccc-CCCeEE
Q 004969          526 YDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-S-----KNIALYDINSGRRLQVFADMH-KEHINV  598 (721)
Q Consensus       526 WDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-D-----g~IrlWDl~s~~~v~~l~~~h-~~~V~s  598 (721)
                      ||..+.+-.  ....      ......-.+++. .++..++.||. +     ..+.+||+.+.+-...-.-.. .....+
T Consensus       122 ~d~~~~~W~--~~~~------~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~  192 (315)
T 4asc_A          122 YDRLSFKWG--ESDP------LPYVVYGHTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGA  192 (315)
T ss_dssp             EETTTTEEE--ECCC------CSSCCBSCEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEE
T ss_pred             ECCCCCcEe--ECCC------CCCcccceeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEE
Confidence            888774321  1110      000011111222 25556666665 2     468999998775433211001 111222


Q ss_pred             EEEcCCCCcEEEEEECCC-----cEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCC--------------
Q 004969          599 VKFSNHSPSIFATSSFDQ-----DVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGT--------------  659 (721)
Q Consensus       599 I~fsPdg~~lLaSgs~Dg-----tIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg--------------  659 (721)
                      +.+  ++ .+++.|+.++     .+.+||+.+.+...+...+......+++. -+++.++.|+.++              
T Consensus       193 ~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~  268 (315)
T 4asc_A          193 TVH--DG-RIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVS-LVGTLYAIGGFATLETESGELVPTELN  268 (315)
T ss_dssp             EEE--TT-EEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEEEEECTTSCEEEEEEE
T ss_pred             EEE--CC-EEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEE-ECCEEEEECCccccCcCCccccccccC
Confidence            333  44 6888887654     58899999876544433222211112222 2567777776532              


Q ss_pred             cEEEEEcCCC
Q 004969          660 SMFVQSLRGD  669 (721)
Q Consensus       660 ~I~VWDl~g~  669 (721)
                      .+.+||+...
T Consensus       269 ~v~~yd~~~~  278 (315)
T 4asc_A          269 DIWRYNEEEK  278 (315)
T ss_dssp             EEEEEETTTT
T ss_pred             cEEEecCCCC
Confidence            3567777643

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=92.63  E-value=0.054  Score=58.29  Aligned_cols=109  Identities=10%  Similarity=0.149  Sum_probs=72.8

Q ss_pred             cccceEeeccCCchhhHHHHHhhcCC-ccceEeeccc--cc------ccccc---cccccceeeEEecccccccccc-cc
Q 004969           99 DQKLRVVDLHDSSFGKDFIRNLSQRG-LMCEVLNLRS--SR------FRKLN---MIGEFKRIHTLNLDYSTSLTSF-KE  165 (721)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~------~~~~~---~~~~~~~~~~l~~~~~~~~~~~-~~  165 (721)
                      ..+|+.++|....++.+.++.|.... .+=+.|+|+.  +.      ++.|.   ..+.|++|.+|+|. ++.|+.- ..
T Consensus       192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~-~~~i~~~~~~  270 (362)
T 2ra8_A          192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIV-DAEEQNVVVE  270 (362)
T ss_dssp             CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEE-SCTTHHHHHH
T ss_pred             CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCC-CCCCchHHHH
Confidence            46788888888888889999998643 3456688752  22      21111   12469999999998 5666531 11


Q ss_pred             ccc--ccccccchhccccccchhh--hHHHHHhhcCCcchhhcccee
Q 004969          166 DCF--SCMPNLICLSMCETRVGNL--WTTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       166 ~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  208 (721)
                      --|  ..||+|+.|.+..|.+.+.  -.-..+|.+|++|++|.+..|
T Consensus       271 ~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n  317 (362)
T 2ra8_A          271 MFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN  317 (362)
T ss_dssp             HHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred             HHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence            222  4799999999999988763  011224567899999987644

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=92.17  E-value=16  Score=40.06  Aligned_cols=197  Identities=10%  Similarity=0.131  Sum_probs=125.2

Q ss_pred             EEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccc
Q 004969          458 QFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRG  537 (721)
Q Consensus       458 ~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~  537 (721)
                      +.-.|| ..+.+|.-. ..++.|+|+++...++....   ...|.--.|-  +.+.|+-.+. ..|.-|++.......+.
T Consensus        70 sAIMnP-~~~iiALra-g~~lQiFnle~K~klks~~~---~e~VvfWkWi--s~~~l~lVT~-taVyHWsi~~~s~P~kv  141 (494)
T 1bpo_A           70 SAIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTM---TDDVTFWKWI--SLNTVALVTD-NAVYHWSMEGESQPVKM  141 (494)
T ss_dssp             EEEECS-SSSCEEEEE-TTEEEEEETTTTEEEEEEEC---SSCCCEEEEE--ETTEEEEECS-SEEEEEESSSSCCCEEE
T ss_pred             eeeeCC-CCcEEEEec-CCeEEEEchHHhhhhcceec---CCCceEEEec--CCCeEEEEcC-CeeEEecccCCCCchhh
Confidence            345677 667676665 78999999999988887764   2467777886  4556655554 48999999864433222


Q ss_pred             cccCcceeEeccCCCeEEEEEecCCCEEEEEeC-------CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCC--CCcE
Q 004969          538 MHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-------SKNIALYDINSGRRLQVFADMHKEHINVVKFSNH--SPSI  608 (721)
Q Consensus       538 ~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-------Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPd--g~~l  608 (721)
                      ...+...    ...+|..-..+++..+++..|-       .|.+.+|..+.+. .+.+.| |......+....+  ...+
T Consensus       142 FdR~~~L----~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieG-haa~F~~~~~~g~~~~~~l  215 (494)
T 1bpo_A          142 FDRHSSL----AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEG-HAASFAQFKMEGNAEESTL  215 (494)
T ss_dssp             EECCGGG----TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECC-SEEEEEEEECTTCSSEEEE
T ss_pred             eecchhc----ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchhee-eeeeeEEEecCCCCCCceE
Confidence            2222111    1245677777788888776652       4778899987443 455565 7665544444321  1134


Q ss_pred             EEEEECC---CcEEEEECCCCC-cee-----EEE--ecC---CCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004969          609 FATSSFD---QDVKLWDLRQKP-IQP-----CYT--ASS---SKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRG  668 (721)
Q Consensus       609 LaSgs~D---gtIrIWDlrs~~-~~~-----~~~--~~~---~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g  668 (721)
                      ++-+...   +.++|-++.... ..+     ...  ++.   ..-++++..|+.-..++.-+.-|.+++||+..
T Consensus       216 f~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleT  289 (494)
T 1bpo_A          216 FCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET  289 (494)
T ss_dssp             EEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTT
T ss_pred             EEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEeccc
Confidence            4444443   789999985430 001     111  111   23356899999888999999999999999983

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=92.04  E-value=1.2  Score=47.04  Aligned_cols=148  Identities=9%  Similarity=0.076  Sum_probs=82.2

Q ss_pred             CCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecC---CCEEEEEeC-C---
Q 004969          499 NSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSM---DELFLASGY-S---  571 (721)
Q Consensus       499 ~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~---~~~lls~g~-D---  571 (721)
                      ....+++|. +++.++ .+..+|.|.+++  .+..  ..+....  +..........++++|+   ++.++++.. .   
T Consensus        31 ~~P~~ia~~-pdG~l~-V~e~~g~I~~i~--~g~~--~~~~~~~--v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~  102 (352)
T 2ism_A           31 EVPWALAFL-PDGGML-IAERPGRIRLFR--EGRL--STYAELS--VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGG  102 (352)
T ss_dssp             SCEEEEEEC-TTSCEE-EEETTTEEEEEE--TTEE--EEEEECC--CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTS
T ss_pred             CCceEEEEc-CCCeEE-EEeCCCeEEEEE--CCCc--cEeecce--EeecCCCCceeEEECCCCCCCCEEEEEEecCCCC
Confidence            456789998 677754 456679999998  3221  1110000  11122345789999998   566666543 2   


Q ss_pred             --CcEEEEECCCCc-----EE-EEEc--cccCCCeEEEEEcCCCCcEEEEEEC-------------CCcEEEEECCCC--
Q 004969          572 --KNIALYDINSGR-----RL-QVFA--DMHKEHINVVKFSNHSPSIFATSSF-------------DQDVKLWDLRQK--  626 (721)
Q Consensus       572 --g~IrlWDl~s~~-----~v-~~l~--~~h~~~V~sI~fsPdg~~lLaSgs~-------------DgtIrIWDlrs~--  626 (721)
                        +.|..|+...++     .+ ..+.  .........++|.|+| .+.++.+.             .|.|.-+|....  
T Consensus       103 ~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p  181 (352)
T 2ism_A          103 LRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTTGEVYERELAQDLASLGGKILRLTPEGEPA  181 (352)
T ss_dssp             SEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBC
T ss_pred             CccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEECCCCCCccccCCCCCceEEEEEcCCCCCC
Confidence              578888877442     11 1232  1111234689999999 66666432             145655665431  


Q ss_pred             ----------CceeEEEecCCCCeEEEEEec-CCCEEEEEe
Q 004969          627 ----------PIQPCYTASSSKGNVMVCFSP-DDHYLLGKG  656 (721)
Q Consensus       627 ----------~~~~~~~~~~~~~~vsl~fSp-dg~~Lasgs  656 (721)
                                ....++. .++..+..++|+| +|..+++-.
T Consensus       182 ~~npf~~~~~~~~~i~a-~G~rnp~g~a~d~~~g~l~v~d~  221 (352)
T 2ism_A          182 PGNPFLGRRGARPEVYS-LGHRNPQGLAWHPKTGELFSSEH  221 (352)
T ss_dssp             TTCTTTTCTTSCTTEEE-ECCSEECCCEECTTTCCEEEEEE
T ss_pred             CCCcccCCCCCCccEEE-EcCCCcccEEEECCCCCEEEEEc
Confidence                      0111222 2444555789999 677666544

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=92.01  E-value=6.1  Score=40.32  Aligned_cols=183  Identities=10%  Similarity=0.086  Sum_probs=92.8

Q ss_pred             EEEEEECCCeEEEEECCCCeEEEEeecCCC-CCCeEEEEEeeCCCCEEEEEeC----C-------CeEEEEEcCCCCCcc
Q 004969          468 LMVFGTLDGEIVVVNHENENIVSYIPSFGA-MNSVLGLCWLKKYPSKLIAGSD----N-------GSLKLYDIRHMPPSI  535 (721)
Q Consensus       468 ~LasGs~DG~I~IWdl~tg~~i~~l~~~~H-~~~V~sl~fsp~d~~~LaSgs~----D-------GtVrIWDi~~~~~~~  535 (721)
                      +++.|+  ..+.+||..+++-.. ...... ...-.+++.  .++..++.|+.    +       ..+.+||..+.+-  
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W--   79 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVT--KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW--   79 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEEC--TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE--
T ss_pred             EEEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEE--ECCEEEEEcCcccCCCCCccccccceEEecCCCCeE--
Confidence            455565  579999999887543 221111 122223332  46777777773    1       1267778776432  


Q ss_pred             cccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC--------CcEEEEECCCCcEEEE--EccccCCCeEEEEEcCCC
Q 004969          536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS--------KNIALYDINSGRRLQV--FADMHKEHINVVKFSNHS  605 (721)
Q Consensus       536 ~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D--------g~IrlWDl~s~~~v~~--l~~~h~~~V~sI~fsPdg  605 (721)
                      ..+.... ..+..    ...+.+  ++..++.||.+        ..+.+||..+++-...  +.. .......+.  -++
T Consensus        80 ~~~~~~p-~~r~~----~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~--~~~  149 (315)
T 4asc_A           80 LGMPPLP-SPRCL----FGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPY-VVYGHTVLS--HMD  149 (315)
T ss_dssp             EECCCBS-SCEES----CEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEE--ETT
T ss_pred             EECCCCC-cchhc----eeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCC-cccceeEEE--ECC
Confidence            1111100 00111    112222  45555666622        4689999988754322  111 111122222  244


Q ss_pred             CcEEEEEEC-C-----CcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCC-----cEEEEEcCCC
Q 004969          606 PSIFATSSF-D-----QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGT-----SMFVQSLRGD  669 (721)
Q Consensus       606 ~~lLaSgs~-D-----gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg-----~I~VWDl~g~  669 (721)
                       .+++.|+. +     ..+.+||+.+.+...+...+......+++. -+++.++.|+.++     .+.+||+...
T Consensus       150 -~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~  222 (315)
T 4asc_A          150 -LVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDN  222 (315)
T ss_dssp             -EEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred             -EEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE-ECCEEEEEeccCCCCccceEEEEECCCC
Confidence             67777776 2     468999998875543332222111112222 2667777777654     4778887643

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=92.00  E-value=5.1  Score=46.51  Aligned_cols=197  Identities=10%  Similarity=0.060  Sum_probs=103.7

Q ss_pred             CCCEEEEEECC----CeEEEEECCCCeEEEEe-e-----cCCCCCCeEEEEEeeCCCCEEEEEeCCC------eEEEEEc
Q 004969          465 ISCLMVFGTLD----GEIVVVNHENENIVSYI-P-----SFGAMNSVLGLCWLKKYPSKLIAGSDNG------SLKLYDI  528 (721)
Q Consensus       465 dg~~LasGs~D----G~I~IWdl~tg~~i~~l-~-----~~~H~~~V~sl~fsp~d~~~LaSgs~DG------tVrIWDi  528 (721)
                      ++.+++.|+.+    ..+.+||..+++....- .     .......- +++..+.++..++.||.++      .+.+||.
T Consensus       397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~h-s~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCH-TFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSC-EEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccce-EEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            66788888754    46889998887654433 1     11111112 2222211566777777543      4777888


Q ss_pred             CCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCC--cEEEEECCCCcEEEEEc----cccCCCeEEEEEc
Q 004969          529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSK--NIALYDINSGRRLQVFA----DMHKEHINVVKFS  602 (721)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg--~IrlWDl~s~~~v~~l~----~~h~~~V~sI~fs  602 (721)
                      .+..-.  ....      ......-.+++.-.++..++.||.++  .+.+||..+.+-...-.    ........++.+.
T Consensus       476 ~t~~W~--~~~~------~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~  547 (695)
T 2zwa_A          476 KTREWS--MIKS------LSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFD  547 (695)
T ss_dssp             TTTEEE--ECCC------CSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEE
T ss_pred             CCCcEE--ECCC------CCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEe
Confidence            764321  1110      00011112222223667777777543  79999999876443221    0011222335556


Q ss_pred             CCCCcEEEEEEC--C-----CcEEEEECCCCC------ceeEEEec-CCCCeEEEEEecCCCEEEEEeC--------CCc
Q 004969          603 NHSPSIFATSSF--D-----QDVKLWDLRQKP------IQPCYTAS-SSKGNVMVCFSPDDHYLLGKGS--------GTS  660 (721)
Q Consensus       603 Pdg~~lLaSgs~--D-----gtIrIWDlrs~~------~~~~~~~~-~~~~~vsl~fSpdg~~Lasgs~--------Dg~  660 (721)
                      ...+.+++.|+.  +     ..+.+||+.+..      ...+.... ......+++...++..++.||.        ...
T Consensus       548 ~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~  627 (695)
T 2zwa_A          548 PVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNS  627 (695)
T ss_dssp             TTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTS
T ss_pred             CCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCe
Confidence            552367888876  2     458899998876      33333311 1111113344444777777774        345


Q ss_pred             EEEEEcCCCc
Q 004969          661 MFVQSLRGDP  670 (721)
Q Consensus       661 I~VWDl~g~~  670 (721)
                      +.+||+....
T Consensus       628 v~~yd~~t~~  637 (695)
T 2zwa_A          628 IISLDPLSET  637 (695)
T ss_dssp             EEEEETTTTE
T ss_pred             EEEEECCCCe
Confidence            8889987543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=91.75  E-value=7.3  Score=42.76  Aligned_cols=165  Identities=13%  Similarity=0.100  Sum_probs=86.9

Q ss_pred             CCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCccee-EeccCCCeEEEEEecC---CCEEEEEeC----
Q 004969          499 NSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTV-TFDEFDQLTSVHVNSM---DELFLASGY----  570 (721)
Q Consensus       499 ~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~-~~~~~~~V~sv~~sp~---~~~lls~g~----  570 (721)
                      ...++|+|. ++++++++-...+.|++++..++....  +....... .......+..++++|+   ++.++++..    
T Consensus        27 ~~P~~~a~~-pdG~l~V~e~~gg~I~~~~~~~g~~~~--~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~  103 (454)
T 1cru_A           27 NKPHALLWG-PDNQIWLTERATGKILRVNPESGSVKT--VFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNP  103 (454)
T ss_dssp             SSEEEEEEC-TTSCEEEEETTTCEEEEECTTTCCEEE--EEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECT
T ss_pred             CCceEEEEc-CCCcEEEEEcCCCEEEEEECCCCcEeE--EecCCccccccCCCCceeEEEECCCcCcCCEEEEEEecccc
Confidence            456799998 677766664444578888765433210  00000000 0012345789999996   666665542    


Q ss_pred             ---------CCcEEEEECCCC-------cEEE-EEccccCCCeEEEEEcCCCCcEEEEEECC------------------
Q 004969          571 ---------SKNIALYDINSG-------RRLQ-VFADMHKEHINVVKFSNHSPSIFATSSFD------------------  615 (721)
Q Consensus       571 ---------Dg~IrlWDl~s~-------~~v~-~l~~~h~~~V~sI~fsPdg~~lLaSgs~D------------------  615 (721)
                               ...|.-|+...+       +.+. .+..........++|.|+| .+.++.+..                  
T Consensus       104 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv~~Gd~~~~~~~~~~~~~~~~~~p  182 (454)
T 1cru_A          104 KSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYTIGDQGRNQLAYLFLPNQAQHTP  182 (454)
T ss_dssp             TC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS-CEEEEECCTTTTSGGGTTSCCCTTCCC
T ss_pred             CCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC-eEEEEECCCCCCCcccccccccccccc
Confidence                     134655655322       1111 1222122357899999999 666654431                  


Q ss_pred             --------------CcEEEEECCCCCc---------eeEEEecCCCCeEEEEEecCCCEEEEE-eCCCcEEEEEcC
Q 004969          616 --------------QDVKLWDLRQKPI---------QPCYTASSSKGNVMVCFSPDDHYLLGK-GSGTSMFVQSLR  667 (721)
Q Consensus       616 --------------gtIrIWDlrs~~~---------~~~~~~~~~~~~vsl~fSpdg~~Lasg-s~Dg~I~VWDl~  667 (721)
                                    |.|.-++....-.         ....-..++..+..++|+|+|+..++- +.++.-.|.-+.
T Consensus       183 ~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp~G~L~~~d~g~~~~dein~i~  258 (454)
T 1cru_A          183 TQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGKLLQSEQGPNSDDEINLIV  258 (454)
T ss_dssp             CHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSCEEEEEECSSSCEEEEECC
T ss_pred             ccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECCCCCEEEEecCCCCCeEEEEec
Confidence                          2333333332100         112223466677789999988866654 334444444443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=91.42  E-value=2.9  Score=42.65  Aligned_cols=188  Identities=11%  Similarity=0.091  Sum_probs=96.5

Q ss_pred             CCCEEEEEECC----CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeC----C-----CeEEEEEcCCC
Q 004969          465 ISCLMVFGTLD----GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD----N-----GSLKLYDIRHM  531 (721)
Q Consensus       465 dg~~LasGs~D----G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~----D-----GtVrIWDi~~~  531 (721)
                      ++.+++.|+.+    ..+.+||..+++....-........ .+++.  .++..++.|+.    +     ..+.+||..+.
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~  100 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSG-LAGCV--VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN  100 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEE--ETTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCccccc-ceEEE--ECCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence            55777777742    4688999987765432111111111 12222  25566666665    2     35778888764


Q ss_pred             CCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC-----CcEEEEECCCCcEEEE--EccccCCCeEEEEEcCC
Q 004969          532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS-----KNIALYDINSGRRLQV--FADMHKEHINVVKFSNH  604 (721)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D-----g~IrlWDl~s~~~v~~--l~~~h~~~V~sI~fsPd  604 (721)
                      .-.  .+..... ..    .....+.+  ++..++.||.+     ..+.+||..+.+-...  +.. .......+.+  +
T Consensus       101 ~W~--~~~~~p~-~r----~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~  168 (308)
T 1zgk_A          101 QWS--PCAPMSV-PR----NRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLT-RRIGVGVAVL--N  168 (308)
T ss_dssp             EEE--ECCCCSS-CC----BTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSS-CCBSCEEEEE--T
T ss_pred             eEe--ECCCCCc-Cc----cccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCc-cccceEEEEE--C
Confidence            321  1110000 00    01122222  55556666532     4688999987754332  111 1112222333  4


Q ss_pred             CCcEEEEEECC-----CcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEEcCCC
Q 004969          605 SPSIFATSSFD-----QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG-----TSMFVQSLRGD  669 (721)
Q Consensus       605 g~~lLaSgs~D-----gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D-----g~I~VWDl~g~  669 (721)
                      + .+++.|+.+     ..+.+||+.+.....+...+......+++.. ++..++.|+.+     ..+.+||+...
T Consensus       169 ~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~  241 (308)
T 1zgk_A          169 R-LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETE  241 (308)
T ss_dssp             T-EEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             C-EEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCC
Confidence            4 677777765     4589999988755433222221111122222 66777777654     46888998744

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=90.99  E-value=4.6  Score=40.23  Aligned_cols=182  Identities=8%  Similarity=-0.064  Sum_probs=93.2

Q ss_pred             CCEEEEEECCCeEEEEECCCCe------EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccc
Q 004969          466 SCLMVFGTLDGEIVVVNHENEN------IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMH  539 (721)
Q Consensus       466 g~~LasGs~DG~I~IWdl~tg~------~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~  539 (721)
                      ..+|.+...| +|+.=....+.      ....+- .+--..+..++|+| ++.+.+.  .+|.+.-.+..+...  ....
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG-~~gw~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~--~~W~   76 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIG-KGGWSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDN--DNWM   76 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEE-SSSCTTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTT--CCHH
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhccccC-ccccccceeEEECC-CccEEEE--eCCeEEEECCCCCCc--cccc
Confidence            3456666666 66665554443      112221 11124678999995 7775554  677765555433221  1111


Q ss_pred             cCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEE------EEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969          540 YGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRL------QVFADMHKEHINVVKFSNHSPSIFATSS  613 (721)
Q Consensus       540 ~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v------~~l~~~h~~~V~sI~fsPdg~~lLaSgs  613 (721)
                      +....+--.......++.|.+++...++  .||.|.-++..+....      ..+-..-=..+..|.|.|+| .+.+.. 
T Consensus        77 ~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G-~Lyav~-  152 (236)
T 1tl2_A           77 GRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNG-YLYAVH-  152 (236)
T ss_dssp             HHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTS-CEEEEE-
T ss_pred             ccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCc-eEEEEe-
Confidence            1111110001112467888888777776  5699988886432110      11110012467999999999 566655 


Q ss_pred             CCCcEEEEECCCCCce-----eEEEecCCCCeE-EEEEecCCCEEEEEeCCCcE
Q 004969          614 FDQDVKLWDLRQKPIQ-----PCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSM  661 (721)
Q Consensus       614 ~DgtIrIWDlrs~~~~-----~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I  661 (721)
                       |+.++-+...+....     ............ -+.|.++|...++.  ++.+
T Consensus       153 -dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~  203 (236)
T 1tl2_A          153 -GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF  203 (236)
T ss_dssp             -TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred             -CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence             777544333322110     011111111222 46689998888766  6644

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=90.83  E-value=6.7  Score=41.57  Aligned_cols=152  Identities=12%  Similarity=0.111  Sum_probs=85.6

Q ss_pred             CCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecC---CCEEEEE-e--CC
Q 004969          498 MNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSM---DELFLAS-G--YS  571 (721)
Q Consensus       498 ~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~---~~~lls~-g--~D  571 (721)
                      -...++|+|. +++.++++--..|.|++++..++...  .+... ..+..........++++|+   ++.+++. +  .+
T Consensus        31 L~~P~~ia~~-pdG~llVter~~G~I~~v~~~~g~~~--~v~~~-~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~  106 (347)
T 3das_A           31 LNSPWGLAPL-PGGDLLVSSRDEATITRVDAKTGRKT--ELGEV-PGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD  106 (347)
T ss_dssp             CSSEEEEEEC-TTSCEEEEETTTCEEEEECTTTCCEE--EEEEC-TTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred             CCCceEEEEc-CCCcEEEEEecCCEEEEEECCCCcEe--eeccc-CceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence            3567899998 67777766555899999986554321  00000 0011223345789999985   4555543 2  34


Q ss_pred             CcEEEEECCCC----------cEE-EEEccccCCCeEEEEEcCCCCcEEEEEEC-------------CCcEEEEECCCCC
Q 004969          572 KNIALYDINSG----------RRL-QVFADMHKEHINVVKFSNHSPSIFATSSF-------------DQDVKLWDLRQKP  627 (721)
Q Consensus       572 g~IrlWDl~s~----------~~v-~~l~~~h~~~V~sI~fsPdg~~lLaSgs~-------------DgtIrIWDlrs~~  627 (721)
                      +.|.-|....+          +.+ ..+..........|.|.|+| .+.++.+.             -|.|.-.+.....
T Consensus       107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG-~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i  185 (347)
T 3das_A          107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK-MLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP  185 (347)
T ss_dssp             EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS-CEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB
T ss_pred             CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC-CEEEEECCCCCCccccCCCCCCCEEEEEeCCCCc
Confidence            55666665541          112 12321122234579999999 66666442             2444444544220


Q ss_pred             -------ceeEEEecCCCCeEEEEEecCCCEEEEE
Q 004969          628 -------IQPCYTASSSKGNVMVCFSPDDHYLLGK  655 (721)
Q Consensus       628 -------~~~~~~~~~~~~~vsl~fSpdg~~Lasg  655 (721)
                             ...++ ..++..+..++|+|+|...++-
T Consensus       186 p~~nPf~~~~i~-a~G~RNp~Gla~dp~G~L~~~d  219 (347)
T 3das_A          186 APGNPFPGSPVY-SYGHRNVQGLAWDDKQRLFASE  219 (347)
T ss_dssp             CTTCSSTTCCEE-EBCCSBCCEEEECTTCCEEEEE
T ss_pred             cCCCCCCCCeEE-eeCCCCcceEEECCCCCEEEEe
Confidence                   01133 2466677789999998876654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=90.73  E-value=32  Score=42.36  Aligned_cols=189  Identities=10%  Similarity=0.033  Sum_probs=104.7

Q ss_pred             CeEEEEEeCCC-----CCEEEEEEC-CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeC-CCCEEEEEeCCCeEEEEE
Q 004969          455 RPRQFEYHPSI-----SCLMVFGTL-DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKK-YPSKLIAGSDNGSLKLYD  527 (721)
Q Consensus       455 ~V~~lafsP~d-----g~~LasGs~-DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~-d~~~LaSgs~DGtVrIWD  527 (721)
                      .|.|+++.|..     ..++++|.. |++|+|+++.+.+.+......+ .....++..... ...+|..|-.||.+.-+.
T Consensus       555 evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~-~~~p~si~l~~~~~~~~L~igl~dG~l~~~~  633 (1158)
T 3ei3_A          555 EVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGG-EIIPRSILMTTFESSHYLLCALGDGALFYFG  633 (1158)
T ss_dssp             CEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCS-SCCEEEEEEEEETTEEEEEEEETTSEEEEEE
T ss_pred             ceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCC-CCCCcEEEEEEeCCCcEEEEEeCCCeEEEEE
Confidence            48999998732     479999997 9999999999877665544322 234445544322 345788899999987766


Q ss_pred             cCC--CCCcccccccCcceeEeccCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCCcEEEEEccccCCCe-EEEEEcC
Q 004969          528 IRH--MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDE-LFLASGYSKNIALYDINSGRRLQVFADMHKEHI-NVVKFSN  603 (721)
Q Consensus       528 i~~--~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~-~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V-~sI~fsP  603 (721)
                      +..  +...-       ....+-+..++.=..+...+. .++++| +....+|--+ ++....-.  ....+ ....|+.
T Consensus       634 ~d~~tg~l~d-------~r~~~LG~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~-~~l~~s~l--~~~~v~~~~~F~s  702 (1158)
T 3ei3_A          634 LNIETGLLSD-------RKKVTLGTQPTVLRTFRSLSTTNVFACS-DRPTVIYSSN-HKLVFSNV--NLKEVNYMCPLNS  702 (1158)
T ss_dssp             ECTTTCCEEE-------EEEEECCSSCCEEEEEESSSCEEEEEES-SSCEEEEESS-SSEEEEEB--SSSCCCEEEEECC
T ss_pred             EcCCCCcccc-------ceeEEcCCCceEEEEEeeCCceeEEEEC-CCCEEEEEcC-CceEEecc--ChHHhceEeccCc
Confidence            543  22210       011222333444334433343 344444 4444445433 33322211  12223 3344543


Q ss_pred             CC-CcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEe
Q 004969          604 HS-PSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKG  656 (721)
Q Consensus       604 dg-~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs  656 (721)
                      .. +.-++.. .++.++|..+..-...++.+++-...+-.++++|+.+.++.+.
T Consensus       703 e~~~~g~v~~-~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~  755 (1158)
T 3ei3_A          703 DGYPDSLALA-NNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLS  755 (1158)
T ss_dssp             SSSTTEEEEE-CSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEE
T ss_pred             ccCCCcEEEE-cCCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEE
Confidence            22 2334433 3556999888654444555555555555899999888766554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=90.67  E-value=0.068  Score=56.08  Aligned_cols=75  Identities=15%  Similarity=0.150  Sum_probs=49.9

Q ss_pred             cceEeeccccccccccc--ccccceeeEEecccccccccccccccccccccc-hhccccccchhhhHHHHHhhcCCcchh
Q 004969          126 MCEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLI-CLSMCETRVGNLWTTIAALSKLPSLAE  202 (721)
Q Consensus       126 ~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (721)
                      +=+.|+|++|++..+.-  +....+|++|.|. .+ |+.|++++|..+++|+ .|.+-+ +|..+  .-.|...|++|++
T Consensus       227 ~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~-~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I--~~~aF~~c~~L~~  301 (329)
T 3sb4_A          227 NLVSLDISKTNATTIPDFTFAQKKYLLKIKLP-HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAI--EFGAFMGCDNLRY  301 (329)
T ss_dssp             TCCEEECTTBCCCEECTTTTTTCTTCCEEECC-TT-CCEECTTTTTTCTTCCEEEEECT-TCCEE--CTTTTTTCTTEEE
T ss_pred             CCeEEECCCCCcceecHhhhhCCCCCCEEECC-cc-cceehHHHhhCChhccEEEEEcc-cceEE--chhhhhCCccCCE
Confidence            34567777777776653  4456677777776 33 8888888888888887 777776 44333  1246677777777


Q ss_pred             hcc
Q 004969          203 LRF  205 (721)
Q Consensus       203 ~~~  205 (721)
                      |.+
T Consensus       302 l~l  304 (329)
T 3sb4_A          302 VLA  304 (329)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            754

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=90.59  E-value=6.4  Score=40.22  Aligned_cols=189  Identities=12%  Similarity=0.109  Sum_probs=94.4

Q ss_pred             CCCEEEEEEC----CC-------eEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC-------CeEEEE
Q 004969          465 ISCLMVFGTL----DG-------EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN-------GSLKLY  526 (721)
Q Consensus       465 dg~~LasGs~----DG-------~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D-------GtVrIW  526 (721)
                      ++.+++.|+.    ++       .+.+||..+++....-........ .+++.  .++..++.|+.+       ..+.+|
T Consensus        56 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~y  132 (318)
T 2woz_A           56 QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL-FGLGE--VDDKIYVVAGKDLQTEASLDSVLCY  132 (318)
T ss_dssp             SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS-CEEEE--ETTEEEEEEEEBTTTCCEEEEEEEE
T ss_pred             CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc-cceEE--ECCEEEEEcCccCCCCcccceEEEE
Confidence            6788888873    12       277889887765432111111111 22232  255667777754       357778


Q ss_pred             EcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC------CCcEEEEECCCCcEEEEEccccC-CCeEEE
Q 004969          527 DIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY------SKNIALYDINSGRRLQVFADMHK-EHINVV  599 (721)
Q Consensus       527 Di~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~------Dg~IrlWDl~s~~~v~~l~~~h~-~~V~sI  599 (721)
                      |..+.+-.  ...... .....     .+++. .++..++.||.      -..+.+||+.+.+-...-..... .....+
T Consensus       133 d~~~~~W~--~~~~~p-~~r~~-----~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~  203 (318)
T 2woz_A          133 DPVAAKWS--EVKNLP-IKVYG-----HNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVA  203 (318)
T ss_dssp             ETTTTEEE--EECCCS-SCEES-----CEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred             eCCCCCEe--ECCCCC-Ccccc-----cEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEE
Confidence            88764321  111000 00111     11222 35555666653      24599999998764432111011 112223


Q ss_pred             EEcCCCCcEEEEEECC-----CcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCC--------------Cc
Q 004969          600 KFSNHSPSIFATSSFD-----QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG--------------TS  660 (721)
Q Consensus       600 ~fsPdg~~lLaSgs~D-----gtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D--------------g~  660 (721)
                      .+  ++ .+++.|+.+     ..+.+||+.+.+...+...+......+++. .++..++.|+.+              ..
T Consensus       204 ~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~~~~~~~  279 (318)
T 2woz_A          204 IH--KG-KIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS-LAGSLYAIGGFAMIQLESKEFAPTEVND  279 (318)
T ss_dssp             EE--TT-EEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE-ETTEEEEECCBCCBC----CCBCCBCCC
T ss_pred             EE--CC-EEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE-ECCEEEEECCeeccCCCCceeccceeee
Confidence            33  44 677777654     347789998876544433322221112222 356677776653              34


Q ss_pred             EEEEEcCCC
Q 004969          661 MFVQSLRGD  669 (721)
Q Consensus       661 I~VWDl~g~  669 (721)
                      +.+||+...
T Consensus       280 v~~yd~~~~  288 (318)
T 2woz_A          280 IWKYEDDKK  288 (318)
T ss_dssp             EEEEETTTT
T ss_pred             EEEEeCCCC
Confidence            677777643

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=89.67  E-value=0.18  Score=45.76  Aligned_cols=54  Identities=13%  Similarity=0.134  Sum_probs=41.4

Q ss_pred             Eeeccccccc--ccccccccceeeEEecccccccccccccccccccccchhccccccc
Q 004969          129 VLNLRSSRFR--KLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRV  184 (721)
Q Consensus       129 ~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (721)
                      ++|.+++.+.  .+- .+-..+|.+|+|. +|.|+.|+++-|..||+|+.|.|.+|..
T Consensus        12 ~v~Cs~~~L~~~~vP-~~lp~~l~~L~Ls-~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLP-TAFPVDTTELVLT-GNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSC-SCCCTTCSEEECT-TSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCC-CCCCcCCCEEECC-CCcCCccChhhhhhccccCEEEecCCCe
Confidence            4555555554  222 1244579999999 9999999999999999999999988743

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=89.64  E-value=8.9  Score=40.32  Aligned_cols=150  Identities=9%  Similarity=0.064  Sum_probs=81.0

Q ss_pred             CCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecC---CCEEEEEeC-----
Q 004969          499 NSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSM---DELFLASGY-----  570 (721)
Q Consensus       499 ~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~---~~~lls~g~-----  570 (721)
                      ...++|+|. ++++.++.+...|.|++++......  ..+... ..+..........++++|+   ++.++++..     
T Consensus        18 ~~P~~i~~~-pdG~~l~V~e~~G~i~~~~~~g~~~--~~~~~~-~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~   93 (353)
T 2g8s_A           18 DHPWALAFL-PDNHGMLITLRGGELRHWQAGKGLS--APLSGV-PDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDD   93 (353)
T ss_dssp             SSEEEEEEC-STTCCEEEEETTTEEEEEETTTEEC--CCCBSC-CCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSS
T ss_pred             CCcEEEEEc-CCCCEEEEEeCCceEEEEeCCCcee--eEecCC-cccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCC
Confidence            356889998 6777344556789999998543211  001100 0111122345689999986   566665532     


Q ss_pred             ---CCcEEEEECCCC--c--EEEE-Ecc-----ccCCCeEEEEEcCCCCcEEEEEEC-------------CCcEEEEECC
Q 004969          571 ---SKNIALYDINSG--R--RLQV-FAD-----MHKEHINVVKFSNHSPSIFATSSF-------------DQDVKLWDLR  624 (721)
Q Consensus       571 ---Dg~IrlWDl~s~--~--~v~~-l~~-----~h~~~V~sI~fsPdg~~lLaSgs~-------------DgtIrIWDlr  624 (721)
                         ...|..|+...+  +  .... +..     ........++|.|+| .+.++-+.             .|.|.-+|..
T Consensus        94 g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d  172 (353)
T 2g8s_A           94 GKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGENNQRPTAQDLDKLQGKLVRLTDQ  172 (353)
T ss_dssp             SCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECCTTCGGGGGCTTSCTTEEEEEETT
T ss_pred             CCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECCCCCCCccCCCCCCCeEEEEECCC
Confidence               235666666533  1  1111 111     011224579999999 66665433             2456666665


Q ss_pred             CCC------------ceeEEEecCCCCeEEEEEec-CCCEEEE
Q 004969          625 QKP------------IQPCYTASSSKGNVMVCFSP-DDHYLLG  654 (721)
Q Consensus       625 s~~------------~~~~~~~~~~~~~vsl~fSp-dg~~Las  654 (721)
                      ...            ...++. .++..+..++|+| +|+..++
T Consensus       173 G~~p~~npf~~~~~~~~~i~a-~G~rnp~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          173 GEIPDDNPFIKESGVRAEIWS-YGIRNPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             SCCCTTCTTTTSTTSCTTEEE-ECCSEEEEEEEETTTTEEEEE
T ss_pred             CCCCCCCCCcCCCCCCccEEE-EcCcCccceEEECCCCCEEEE
Confidence            320            111222 3566677899999 5655554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=89.59  E-value=0.16  Score=48.86  Aligned_cols=60  Identities=17%  Similarity=0.265  Sum_probs=49.1

Q ss_pred             ceeeEEecccccccccccccccccccccchhccccc-cchhhhHHHHHhhcC----Ccchhhccceee
Q 004969          147 KRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCET-RVGNLWTTIAALSKL----PSLAELRFQNWL  209 (721)
Q Consensus       147 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~  209 (721)
                      .+|+.|+|..|. ||...-.-...||+|+.|++.++ +|.+  ..+++|+++    ++|.+|.+..|.
T Consensus        61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD--~gL~~L~~~~~~~~~L~~L~Ls~C~  125 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIED--GCLERLSQLENLQKSMLEMEIISCG  125 (176)
T ss_dssp             CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCH--HHHHHHHTCHHHHHHCCEEEEESCT
T ss_pred             ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCH--HHHHHHHhcccccCCCCEEEcCCCC
Confidence            379999999665 99887777889999999999998 4776  356778876    589999887764

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=89.27  E-value=9.3  Score=38.94  Aligned_cols=185  Identities=10%  Similarity=0.061  Sum_probs=91.6

Q ss_pred             CEEEEEECCCeEEEEECCCCeEEEEeecCC-CCCCeEEEEEeeCCCCEEEEEeC----CC-------eEEEEEcCCCCCc
Q 004969          467 CLMVFGTLDGEIVVVNHENENIVSYIPSFG-AMNSVLGLCWLKKYPSKLIAGSD----NG-------SLKLYDIRHMPPS  534 (721)
Q Consensus       467 ~~LasGs~DG~I~IWdl~tg~~i~~l~~~~-H~~~V~sl~fsp~d~~~LaSgs~----DG-------tVrIWDi~~~~~~  534 (721)
                      .+++.|+.  .+..||..+++... ..... ....-.+++.  .++..++.|+.    ++       .+.+||..+.+- 
T Consensus        17 ~i~~~GG~--~~~~yd~~~~~W~~-~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W-   90 (318)
T 2woz_A           17 LILLVNDT--AAVAYDPMENECYL-TALAEQIPRNHSSIVT--QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEW-   90 (318)
T ss_dssp             EEEEECSS--EEEEEETTTTEEEE-EEECTTSCSSEEEEEC--SSSCEEEEESSCC-------CCCBEEEEEETTTTEE-
T ss_pred             hhhhcccc--ceEEECCCCCceec-ccCCccCCccceEEEE--ECCEEEEECCcccCccccCCCccccEEEEeCCCCcE-
Confidence            44555553  48899999887644 22111 1122233332  46777777773    12       166778766432 


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC-------CcEEEEECCCCcEEEEEcccc-CCCeEEEEEcCCCC
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS-------KNIALYDINSGRRLQVFADMH-KEHINVVKFSNHSP  606 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D-------g~IrlWDl~s~~~v~~l~~~h-~~~V~sI~fsPdg~  606 (721)
                       ..+..... .+    .....+.+  ++..++.||.+       ..+.+||..+.+-...-.-.. ...-..+.  .++ 
T Consensus        91 -~~~~~~p~-~r----~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~-  159 (318)
T 2woz_A           91 -VGLPPLPS-AR----CLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNG-  159 (318)
T ss_dssp             -EECSCBSS-CB----CSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETT-
T ss_pred             -EECCCCCc-cc----cccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECC-
Confidence             11110000 00    11122222  56666677643       358899998776443211001 11111222  245 


Q ss_pred             cEEEEEEC------CCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCC-----cEEEEEcCCC
Q 004969          607 SIFATSSF------DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGT-----SMFVQSLRGD  669 (721)
Q Consensus       607 ~lLaSgs~------DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg-----~I~VWDl~g~  669 (721)
                      .+++.|+.      -..+.+||+.+.+...+...+......+++. -++..++.|+.++     .+.+||+...
T Consensus       160 ~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~  232 (318)
T 2woz_A          160 MIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTN  232 (318)
T ss_dssp             EEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred             EEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCC
Confidence            67777764      2358999999876544332222211112222 2567777776433     4667887643

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=87.30  E-value=9.4  Score=39.55  Aligned_cols=52  Identities=6%  Similarity=0.071  Sum_probs=27.1

Q ss_pred             cEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCC------cEEEEEcCCC
Q 004969          617 DVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGT------SMFVQSLRGD  669 (721)
Q Consensus       617 tIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg------~I~VWDl~g~  669 (721)
                      .+.+||+.+.+...+-.++......+ +...+++.++.|+.++      .+.+++++++
T Consensus       286 ~~~~yd~~~~~W~~~~~~p~~r~~~~-~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~  343 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELSQGRAYGV-SLPWNNSLLIIGGETAGGKAVTDSVLITVKDN  343 (357)
T ss_dssp             CCEEEECC---CEEEEECSSCCBSSE-EEEETTEEEEEEEECGGGCEEEEEEEEEC-CC
T ss_pred             eEEEEecCCCceeeCCCCCCCcccce-eEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCc
Confidence            57899999887666554443222222 2334677777787543      2444566644

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=87.07  E-value=39  Score=37.03  Aligned_cols=166  Identities=12%  Similarity=0.098  Sum_probs=94.4

Q ss_pred             CeEEEEEeCCCCCEEEEEE-------CCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEe--eCCCCEEEEEeC---CCe
Q 004969          455 RPRQFEYHPSISCLMVFGT-------LDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWL--KKYPSKLIAGSD---NGS  522 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs-------~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fs--p~d~~~LaSgs~---DGt  522 (721)
                      .|..-..++ +.++++..+       -.|.+.+|..+.+. .+.+.  ||...-..+...  +.....+.-+..   .+.
T Consensus       152 QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ie--Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~k  227 (494)
T 1bpo_A          152 QIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIE--GHAASFAQFKMEGNAEESTLFCFAVRGQAGGK  227 (494)
T ss_dssp             EEEEEEECT-TSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEEC--CSEEEEEEEECTTCSSEEEEEEEEECSTTCCE
T ss_pred             eEEEEEECC-CCCeEEEEeecccCCcccceEEEeeccccc-cchhe--eeeeeeEEEecCCCCCCceEEEEEEecCCCcE
Confidence            455566677 677766433       24788899988543 33444  554433333221  000112333333   278


Q ss_pred             EEEEEcCCCCCcccccccCcceeEecc---CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEE
Q 004969          523 LKLYDIRHMPPSIRGMHYGAGTVTFDE---FDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVV  599 (721)
Q Consensus       523 VrIWDi~~~~~~~~~~~~~~~~~~~~~---~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI  599 (721)
                      ++|.++................+.|..   .+--.++.+++..+.++....-|.+++||+.++.++..-+- ....|...
T Consensus       228 Lhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrI-s~~~iF~t  306 (494)
T 1bpo_A          228 LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI-SGETIFVT  306 (494)
T ss_dssp             EEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEE
T ss_pred             EEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecc-cCCceEEe
Confidence            999999654111111111111112222   12356788889999999999999999999999999887764 55566655


Q ss_pred             EEcCCCCcEEEEEECCCcEEEEECCCC
Q 004969          600 KFSNHSPSIFATSSFDQDVKLWDLRQK  626 (721)
Q Consensus       600 ~fsPdg~~lLaSgs~DgtIrIWDlrs~  626 (721)
                      +.+... .-++.-...|.|.--.+...
T Consensus       307 ~~~~~~-~Gi~~Vnr~GqVl~v~v~e~  332 (494)
T 1bpo_A          307 APHEAT-AGIIGVNRKGQVLSVCVEEE  332 (494)
T ss_dssp             EEETTT-TEEEEEETTCEEEEEEECTT
T ss_pred             cccCCC-CcEEEEccCceEEEEEEccc
Confidence            555444 23444446666655555443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=86.98  E-value=13  Score=46.63  Aligned_cols=196  Identities=10%  Similarity=0.117  Sum_probs=117.0

Q ss_pred             EEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCccccc
Q 004969          459 FEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGM  538 (721)
Q Consensus       459 lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~  538 (721)
                      .-.|| ..+.+|.-. ..++.|+|+++...++....   ...|.--.|-  +.+.|+-.+. ..|.-|++.+...+.+..
T Consensus        71 AIMnP-~~~iiALra-g~~lQiFnl~~k~klks~~~---~e~VvfWkWi--s~~~l~lVT~-~aVyHW~~~~~s~P~k~f  142 (1630)
T 1xi4_A           71 AIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTM---TDDVTFWKWI--SLNTVALVTD-NAVYHWSMEGESQPVKMF  142 (1630)
T ss_pred             hccCC-CcceEEEec-CCeEEEeehHHhhhhccccc---CCCceEEEec--CCCeeEEEcC-CeEEEeccCCCCccHHHH
Confidence            33577 556666654 78999999998877766643   3567777885  4555555543 489999997643332222


Q ss_pred             ccCcceeEeccCCCeEEEEEecCCCEEEEEeC-------CCcEEEEECCCCcEEEEEccccCCCeEEEEEc--CCCCcEE
Q 004969          539 HYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-------SKNIALYDINSGRRLQVFADMHKEHINVVKFS--NHSPSIF  609 (721)
Q Consensus       539 ~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-------Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fs--Pdg~~lL  609 (721)
                      ..+....    ..+|..-..+++..+++..|-       .|.+.+|....+. .+.+.| |.+....+...  +....++
T Consensus       143 dR~~~L~----~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~ieg-ha~~F~~~~~~~~~~~~~l~  216 (1630)
T 1xi4_A          143 DRHSSLA----GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEG-HAASFAQFKMEGNAEESTLF  216 (1630)
T ss_pred             hcchhcc----cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhH-hHhhhheeccCCCCCCceEE
Confidence            2222111    245667777788888776652       4788899877433 334444 65544333332  1111233


Q ss_pred             EEEEC---CCcEEEEECCCC-CceeEE-------EecC---CCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004969          610 ATSSF---DQDVKLWDLRQK-PIQPCY-------TASS---SKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRG  668 (721)
Q Consensus       610 aSgs~---DgtIrIWDlrs~-~~~~~~-------~~~~---~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g  668 (721)
                      +-+..   .+.++|-++... ...+.+       .++.   ..-++++..|+.-..+..-+.-|.+++||+..
T Consensus       217 ~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t  289 (1630)
T 1xi4_A          217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET  289 (1630)
T ss_pred             EEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEeccc
Confidence            33322   268888888543 001111       1111   22345788888888888888999999999983

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=86.33  E-value=16  Score=36.41  Aligned_cols=154  Identities=10%  Similarity=-0.003  Sum_probs=80.7

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeE------EEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENI------VSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDI  528 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~------i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi  528 (721)
                      .++.++|+| ++.+.++  .+|.+.-.+..++..      -..+-..+-.. -.++.|. +++.+.++  .||.|.-++-
T Consensus        42 ~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD-~~G~LYav--~dG~iyr~~p  114 (236)
T 1tl2_A           42 NFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFD-PNGYLYAV--SKDKLYKASP  114 (236)
T ss_dssp             TCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEEC-TTSCEEEE--ETTEEEEESC
T ss_pred             cceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEEC-CCCCEEEe--CCCEEEEeCC
Confidence            367899999 9887777  678766666544111      11221111111 3456665 67766666  5698877765


Q ss_pred             CCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc------EEEEEccccCCCeEEEEEc
Q 004969          529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR------RLQVFADMHKEHINVVKFS  602 (721)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~------~v~~l~~~h~~~V~sI~fs  602 (721)
                      .+...  .........+.-.....+..|.+.|++...++.  |+.++-+...++.      ....+-...-..-.-+.|.
T Consensus       115 P~~~~--~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~  190 (236)
T 1tl2_A          115 PQSDT--DNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFS  190 (236)
T ss_dssp             CCSTT--CCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEEC
T ss_pred             CcCCC--CceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEEC
Confidence            33221  111111112211222457889998888777666  7775444333221      1112211122334456799


Q ss_pred             CCCCcEEEEEECCCcEEEEECC
Q 004969          603 NHSPSIFATSSFDQDVKLWDLR  624 (721)
Q Consensus       603 Pdg~~lLaSgs~DgtIrIWDlr  624 (721)
                      |++ .+.++.  ++  ++|-..
T Consensus       191 ~~G-~l~~v~--~g--~~Y~~~  207 (236)
T 1tl2_A          191 SVG-TLFGVQ--GG--KFYEDY  207 (236)
T ss_dssp             TTS-CEEEEE--TT--EEEEES
T ss_pred             CCC-cEEEEe--CC--eEEecC
Confidence            988 565555  66  444443

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=84.30  E-value=7.5  Score=45.08  Aligned_cols=157  Identities=6%  Similarity=0.026  Sum_probs=81.3

Q ss_pred             CCCEEEEEECC------CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCC--eEEEEEcCCCCCccc
Q 004969          465 ISCLMVFGTLD------GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG--SLKLYDIRHMPPSIR  536 (721)
Q Consensus       465 dg~~LasGs~D------G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DG--tVrIWDi~~~~~~~~  536 (721)
                      ++.+++.|+.+      ..+.+||..+.+....-........-.++.+  .++..++.||.++  .+.+||..+..-...
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~--~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~  528 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSL--PDGNVLILGGVTEGPAMLLYNVTEEIFKDV  528 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEEC--TTSCEEEECCBCSSCSEEEEETTTTEEEEC
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEE--cCCEEEEECCCCCCCCEEEEECCCCceEEc
Confidence            45677777753      3578899887655433211111111222222  3677888887655  688899887543211


Q ss_pred             ccccCcceeEeccCCCeEEEEEecC-CCEEEEEeC--C-----CcEEEEECCCCc------EEEEEc--cccCCCeEEEE
Q 004969          537 GMHYGAGTVTFDEFDQLTSVHVNSM-DELFLASGY--S-----KNIALYDINSGR------RLQVFA--DMHKEHINVVK  600 (721)
Q Consensus       537 ~~~~~~~~~~~~~~~~V~sv~~sp~-~~~lls~g~--D-----g~IrlWDl~s~~------~v~~l~--~~h~~~V~sI~  600 (721)
                      ...+.......    ...++.+... +..++.||.  +     ..+.+||+.+.+      ....-.  .........+.
T Consensus       529 ~~~g~~p~~r~----~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~  604 (695)
T 2zwa_A          529 TPKDEFFQNSL----VSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKY  604 (695)
T ss_dssp             CCSSGGGGSCC----BSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEE
T ss_pred             cCCCCCCCccc----ceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEE
Confidence            11000000111    1133444444 445556654  2     458999998876      221111  10112223333


Q ss_pred             EcCCCCcEEEEEECC--------CcEEEEECCCCCce
Q 004969          601 FSNHSPSIFATSSFD--------QDVKLWDLRQKPIQ  629 (721)
Q Consensus       601 fsPdg~~lLaSgs~D--------gtIrIWDlrs~~~~  629 (721)
                      + .++ .+++.|+.+        ..|.+||+.+....
T Consensus       605 ~-~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~  639 (695)
T 2zwa_A          605 I-TPR-KLLIVGGTSPSGLFDRTNSIISLDPLSETLT  639 (695)
T ss_dssp             E-ETT-EEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred             e-CCC-EEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence            3 325 677777743        45999999987553

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=82.04  E-value=0.3  Score=53.01  Aligned_cols=99  Identities=13%  Similarity=0.176  Sum_probs=58.2

Q ss_pred             cccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccc--cccccceeeEEecccccccccccccccccccccch
Q 004969           99 DQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLIC  176 (721)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  176 (721)
                      |.+|+.|+|.++.   ..+.+-...|-.=+.|+|.+ .+..++  .+..+.+|.+|.|. .++|+.|+.++|.| .+|+.
T Consensus       134 ~~~L~~i~l~~~i---~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~-~n~l~~I~~~aF~~-~~L~~  207 (401)
T 4fdw_A          134 NSQIAKVVLNEGL---KSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLS-KTKITKLPASTFVY-AGIEE  207 (401)
T ss_dssp             TCCCSEEECCTTC---CEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECT-TSCCSEECTTTTTT-CCCSE
T ss_pred             cCCccEEEeCCCc---cEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecC-CCcceEechhhEee-cccCE
Confidence            4567888877641   11222222232234455543 444443  33355678888887 77888888888885 78888


Q ss_pred             hccccccchhhhHHHHHhhcCCcchhhccc
Q 004969          177 LSMCETRVGNLWTTIAALSKLPSLAELRFQ  206 (721)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (721)
                      |.+-++ |..+  .-.|...+++|++|.|.
T Consensus       208 l~lp~~-l~~I--~~~aF~~~~~L~~l~l~  234 (401)
T 4fdw_A          208 VLLPVT-LKEI--GSQAFLKTSQLKTIEIP  234 (401)
T ss_dssp             EECCTT-CCEE--CTTTTTTCTTCCCEECC
T ss_pred             EEeCCc-hhee--hhhHhhCCCCCCEEecC
Confidence            887644 4333  12466777777777553

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=81.25  E-value=18  Score=37.41  Aligned_cols=59  Identities=7%  Similarity=0.059  Sum_probs=29.1

Q ss_pred             cEEEEECCCCcE--EEEEccccCCCeEEEEEcCCCCcEEEEEECCC------cEEEEECCCCCceeEEEec
Q 004969          573 NIALYDINSGRR--LQVFADMHKEHINVVKFSNHSPSIFATSSFDQ------DVKLWDLRQKPIQPCYTAS  635 (721)
Q Consensus       573 ~IrlWDl~s~~~--v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~Dg------tIrIWDlrs~~~~~~~~~~  635 (721)
                      .+.+||+.+.+-  +..+.. ......++.+  ++ .+++.|+.++      .|.++++++++.......+
T Consensus       286 ~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~~  352 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELSQ-GRAYGVSLPW--NN-SLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLEH  352 (357)
T ss_dssp             CCEEEECC---CEEEEECSS-CCBSSEEEEE--TT-EEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC---
T ss_pred             eEEEEecCCCceeeCCCCCC-CcccceeEEe--CC-EEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeeccc
Confidence            578999987553  333332 1122223333  45 6888888653      3556688887665444333

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=80.70  E-value=54  Score=33.57  Aligned_cols=189  Identities=8%  Similarity=0.056  Sum_probs=100.2

Q ss_pred             CCCEEEEEE--CCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC--------------CeEEEEEc
Q 004969          465 ISCLMVFGT--LDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN--------------GSLKLYDI  528 (721)
Q Consensus       465 dg~~LasGs--~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D--------------GtVrIWDi  528 (721)
                      ++..|....  .++.|...+..... ...+..    ..+.  -++ +++++|+-+...              ..|+..++
T Consensus        24 ~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~----~~~~--~i~-~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~   95 (302)
T 3s25_A           24 SDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSN----DTAM--YIN-ADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR   95 (302)
T ss_dssp             ETTEEEEEEGGGTTEEEEEETTSCS-CEEEEE----EEEE--EEE-ECSSEEEEEEECC------CCSSCCSEEEEEEET
T ss_pred             eCCEEEEEeCCCCceEEEEcCCCCC-CEEccC----Ccee--eEE-EcCCEEEEEECCCCcccccceeccCCCeEEEEeC
Confidence            455555543  25666666665333 333321    1122  234 566766665542              46777777


Q ss_pred             CCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe----CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCC
Q 004969          529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG----YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNH  604 (721)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g----~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPd  604 (721)
                      .+.+...           +. ..  .+..+++.++.++-+.    ....|..-++.... ...+.. +..    .+++|+
T Consensus        96 dg~~~~~-----------l~-~~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~-~~~----~~~~~~  155 (302)
T 3s25_A           96 NGHGSTV-----------LD-PD--PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKN-HYL----FTCNTS  155 (302)
T ss_dssp             TSCCCEE-----------EE-CS--CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEES-SCC----CCSEEE
T ss_pred             CCCcceE-----------ee-cC--CccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeC-CCc----eEeeEE
Confidence            7654311           10 11  1235667888888776    23456666766433 334432 322    456778


Q ss_pred             CCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCC--cEEEEEcCCCccccc-ccCeEEE
Q 004969          605 SPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGT--SMFVQSLRGDPFRDF-NMSILAA  681 (721)
Q Consensus       605 g~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg--~I~VWDl~g~~l~~~-~~~V~~v  681 (721)
                      +..+..+......|.+-++..+....+  ..+   .....++|++.+|+-...++  .|..-++.|...... ...+  .
T Consensus       156 g~~iy~t~~g~~~Iy~~~l~g~~~~~l--~~~---~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~~~--~  228 (302)
T 3s25_A          156 DRYFYYNNPKNGQLYRYDTASQSEALF--YDC---NCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEANI--E  228 (302)
T ss_dssp             TTEEEEECTTTCCEEEEETTTTEEEEE--ECS---CEEEEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSCSCE--E
T ss_pred             CCEEEEEeCCCceEEEEECCCCCEEEE--eCC---CccceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCCCc--c
Confidence            855555554467888888877643323  222   22234669999988765443  566666665443322 2223  2


Q ss_pred             EECCCCC
Q 004969          682 YTRPSSK  688 (721)
Q Consensus       682 ~fsP~~~  688 (721)
                      .++|.+.
T Consensus       229 ~~~~~g~  235 (302)
T 3s25_A          229 HYNVYGS  235 (302)
T ss_dssp             EEEEETT
T ss_pred             eEEECCC
Confidence            3666663

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	721
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-12
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	7e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-05
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	9e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-04
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	2e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	7e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	7e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.001
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.002

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.0 bits (159), Expect = 5e-12
 Identities = 43/232 (18%), Positives = 83/232 (35%), Gaps = 15/232 (6%)

Query: 407 HKTSYPSGMSQYFYTRSLCAAKVGSSAWPCLHTLTVSGNHMGDENRSFRPRQFEYHPSIS 466
               +   +    Y  S      GS           +G      +           P   
Sbjct: 158 ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDG 217

Query: 467 CLMVFGTLDGEIVVVNHENENIVSYIPS-----FGAMNSVLGLCWLKKYPSKLIAGSDNG 521
             +  G+LD  + V + E   +V  + S      G  +SV  + + +     +++GS + 
Sbjct: 218 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD-GQSVVSGSLDR 276

Query: 522 SLKLYDIRHMPPSIRGMHYGAGTVTFDEF---DQLTSVHVNSMDELFLASGYSKNIALYD 578
           S+KL+++++           +GT         D + SV     DE  L+    + +  +D
Sbjct: 277 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD 336

Query: 579 INSGRRLQVFADMHKEHINVVKFSNHSP-----SIFATSSFDQDVKLWDLRQ 625
             SG  L +    H+  +  V  +N S      ++FAT S D   ++W  ++
Sbjct: 337 KKSGNPLLMLQG-HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 387

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.0 bits (141), Expect = 7e-10
 Identities = 31/162 (19%), Positives = 59/162 (36%), Gaps = 12/162 (7%)

Query: 461 YHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN 520
                + L V G  D    + +             G  + +  +C+     +    GSD+
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFT--GHESDINAICFFPN-GNAFATGSDD 247

Query: 521 GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDIN 580
            + +L+D+R     +   H        +    +TSV  +    L LA     N  ++D  
Sbjct: 248 ATCRLFDLRADQELMTYSHD-------NIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300

Query: 581 SGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWD 622
              R  V A  H   ++ +  ++      AT S+D  +K+W+
Sbjct: 301 KADRAGVLAG-HDNRVSCLGVTDDG-MAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.3 bits (103), Expect = 3e-05
 Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 3/112 (2%)

Query: 557 HVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQ 616
            +     LF++     +  L+D+  G   Q F   H+  IN + F  +  + FAT S D 
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG-HESDINAICFFPNG-NAFATGSDDA 248

Query: 617 DVKLWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLGKGSGTSMFVQSLR 667
             +L+DLR       Y+  +    +  V FS     LL      +  V    
Sbjct: 249 TCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.9 bits (94), Expect = 4e-04
 Identities = 13/105 (12%), Positives = 31/105 (29%), Gaps = 5/105 (4%)

Query: 551 DQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEH-INVVKFSNHSPSIF 609
             + ++        F          L+D+ + + L  ++  +    I  V FS     + 
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR-LL 285

Query: 610 ATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLL 653
                D +  +WD  +         +     V  +  + D   + 
Sbjct: 286 LAGYDDFNCNVWDALKA--DRAGVLAGHDNRVSCLGVTDDGMAVA 328

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.4 bits (129), Expect = 2e-08
 Identities = 24/232 (10%), Positives = 74/232 (31%), Gaps = 19/232 (8%)

Query: 434 WPCLHTLTVSGNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIP 493
                        +   +                 +V  + D  I +   +       + 
Sbjct: 81  MTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY---CVK 137

Query: 494 SFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP--SIRGMHYGAGTVTFD--- 548
           +F      + +    +  + + + S++ +++++ +        +R   +    +++    
Sbjct: 138 TFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPES 197

Query: 549 ------EFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFS 602
                 E     +          L+    K I ++D+++G  L      H   +  V F 
Sbjct: 198 SYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG-HDNWVRGVLFH 256

Query: 603 NHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLL 653
           +       + + D+ +++WD + K  +   T ++ +  V  + F     Y++
Sbjct: 257 SGGK-FILSCADDKTLRVWDYKNK--RCMKTLNAHEHFVTSLDFHKTAPYVV 305

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.0 bits (115), Expect = 9e-07
 Identities = 25/119 (21%), Positives = 50/119 (42%), Gaps = 13/119 (10%)

Query: 505 CWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFD-QLTSVHVNSMDE 563
               K    L++GS + ++K++D+            G   +T    D  +  V  +S  +
Sbjct: 211 KKSGKPGPFLLSGSRDKTIKMWDVST----------GMCLMTLVGHDNWVRGVLFHSGGK 260

Query: 564 LFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWD 622
             L+    K + ++D  + R ++     H+  +  + F   +P    T S DQ VK+W+
Sbjct: 261 FILSCADDKTLRVWDYKNKRCMKTLNA-HEHFVTSLDFHKTAP-YVVTGSVDQTVKVWE 317

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.4 bits (113), Expect = 2e-06
 Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 2/94 (2%)

Query: 530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFA 589
                                  L+++    + +  L SG      +Y++ SG+ +    
Sbjct: 261 ADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANI 320

Query: 590 DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDL 623
               + I  V F     ++ A    D    L  L
Sbjct: 321 LKDADQIWSVNFKGK--TLVAAVEKDGQSFLEIL 352

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.2 bits (110), Expect = 4e-06
 Identities = 10/73 (13%), Positives = 26/73 (35%), Gaps = 3/73 (4%)

Query: 592 HKEHINVVKFSNHSPSIFATSSFDQDVKLWDLR-QKPIQPCYTASSSKGNVM-VCFSPDD 649
            K++I+ +K      S+   +S+D  + ++    Q        +   K  ++   F  + 
Sbjct: 10  PKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT 68

Query: 650 HYLLGKGSGTSMF 662
              +  G+     
Sbjct: 69  DLQIYVGTVQGEI 81

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.0 bits (107), Expect = 1e-05
 Identities = 23/192 (11%), Positives = 63/192 (32%), Gaps = 10/192 (5%)

Query: 445 NHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIVVVN-HENENIVSYIPSFGAMNSVLG 503
               + N +    +     + S  ++ G  + ++        E+    I   G    +  
Sbjct: 139 VKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRD 198

Query: 504 LCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRG------MHYGAGTVTFDEFDQLTSVH 557
           +  L K        S +G + +                    +       +    + S+ 
Sbjct: 199 VALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIE 258

Query: 558 VNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQD 617
            +   +    +G    I+ +++ + ++++ FA  ++   +VVK +  S +I   ++ D  
Sbjct: 259 FSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE--DSVVKIA-CSDNILCLATSDDT 315

Query: 618 VKLWDLRQKPIQ 629
            K      + I+
Sbjct: 316 FKTNAAIDQTIE 327

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 8e-06
 Identities = 38/204 (18%), Positives = 73/204 (35%), Gaps = 22/204 (10%)

Query: 461 YHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN 520
                   +V G  D  + V + E E  +  +              L+     +++GS +
Sbjct: 142 CVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV-----YSLQFDGIHVVSGSLD 196

Query: 521 GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDIN 580
            S++++D+                +      Q  +  +   D + ++      + ++DI 
Sbjct: 197 TSIRVWDVETGNC-----------IHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIK 245

Query: 581 SGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQ-KPIQPCYTASSSKG 639
           +G+ LQ       +H + V     + +   TSS D  VKLWDL+  + I+   T  S   
Sbjct: 246 TGQCLQTL-QGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGS 304

Query: 640 NVMV---CFSPDDHYLL-GKGSGT 659
             +V     S        G  +GT
Sbjct: 305 GGVVWRIRASNTKLVCAVGSRNGT 328

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (106), Expect = 1e-05
 Identities = 9/119 (7%), Positives = 29/119 (24%), Gaps = 3/119 (2%)

Query: 505 CWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDEL 564
                     +     G      +      +  ++             + S+      + 
Sbjct: 220 QHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKW 279

Query: 565 FLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDL 623
           F+++G    +  +    G  +          +     S        T S D+   ++++
Sbjct: 280 FVSTGKDNLLNAWRTPYGASIFQSK--ESSSVLSCDISVDD-KYIVTGSGDKKATVYEV 335

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 1e-04
 Identities = 13/46 (28%), Positives = 27/46 (58%)

Query: 324 YISCHASPICFEKHYRDYMIASLPKLKFLDNLPIRKVDRERATITY 369
           Y+    +P+  +KHYR Y+I  +P+++ LD   ++  +R+ A   +
Sbjct: 116 YLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMF 161

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.8 bits (96), Expect = 2e-04
 Identities = 14/162 (8%), Positives = 35/162 (21%), Gaps = 15/162 (9%)

Query: 505 CWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDEL 564
                    L   S        D   +  S       +            +        +
Sbjct: 184 PAFDADSKNLYYLSYRSLDPSPDRVVLNFS---FEVVSKPFVIPLIPGSPNPTKLVPRSM 240

Query: 565 FLASGYSKNIALYDI----NSGRRLQVFADMHKEHINVVKFSNHSP--SIFATSSFDQDV 618
              +G      +Y      N            +  I +     H    + +  +     +
Sbjct: 241 TSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVL 300

Query: 619 KLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLL-GKGSGT 659
             +D++ + +       +      +  S D   ++  K  G 
Sbjct: 301 LKYDVKTRKVTEVKNNLTD-----LRLSADRKTVMVRKDDGK 337

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 16/76 (21%), Positives = 31/76 (40%)

Query: 292 WNEVSFDAFSNQNEEESSAGVLARCTADVSLKYISCHASPICFEKHYRDYMIASLPKLKF 351
              +S +  +N  E +  A +       ++   +            YR  ++  LP LK 
Sbjct: 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK 178

Query: 352 LDNLPIRKVDRERATI 367
           LD +P+   +RE+A +
Sbjct: 179 LDGMPVDVDEREQANV 194

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.4 bits (95), Expect = 3e-04
 Identities = 9/63 (14%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 592 HKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM-VCFSPDDH 650
             E I+   ++    +  A    + +V +++         +      G V  V ++PD +
Sbjct: 6   LVEPISCHAWN-KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN 64

Query: 651 YLL 653
            ++
Sbjct: 65  RIV 67

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.0 bits (94), Expect = 4e-04
 Identities = 13/107 (12%), Positives = 34/107 (31%), Gaps = 2/107 (1%)

Query: 551 DQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFA-DMHKEHINVVKFSNHSPSIF 609
           + ++    N           +  + +Y+ +  + +QV     H   +  V ++  S +  
Sbjct: 8   EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS-NRI 66

Query: 610 ATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKG 656
            T   D++  +W L+ +  +P                  +      G
Sbjct: 67  VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVG 113

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 3e-04
 Identities = 18/126 (14%), Positives = 45/126 (35%), Gaps = 22/126 (17%)

Query: 505 CWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDEL 564
             L+     +++GS + +++L+DI                +   E  +     +   ++ 
Sbjct: 182 ACLQYRDRLVVSGSSDNTIRLWDIECGAC-----------LRVLEGHEELVRCIRFDNKR 230

Query: 565 FLASGYSKNIALYDINSGRRLQVFADM--------HKEHINVVKFSNHSPSIFATSSFDQ 616
            ++  Y   I ++D+ +    +  A          H   +  ++F         +SS D 
Sbjct: 231 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD---EFQIVSSSHDD 287

Query: 617 DVKLWD 622
            + +WD
Sbjct: 288 TILIWD 293

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (93), Expect = 4e-04
 Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 1/64 (1%)

Query: 561 MDELFLASGYSKNIALYDINSGRRLQVF-ADMHKEHINVVKFSNHSPSIFATSSFDQDVK 619
             + F   G    I ++D+ + + +Q +  D  +     V           + S D  + 
Sbjct: 262 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLN 321

Query: 620 LWDL 623
            ++L
Sbjct: 322 FYEL 325

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 40.2 bits (92), Expect = 7e-04
 Identities = 12/152 (7%), Positives = 41/152 (26%), Gaps = 4/152 (2%)

Query: 560 SMDEL-FLASGYSKNIALYDINSGRRLQVFADM-HKEHINVVKFSNHSPSIFATSSFDQD 617
           S+ +  ++AS  S+ I ++++N    L +   +     +  +  S     ++     +  
Sbjct: 1   SLKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFR 60

Query: 618 VKLWDL--RQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDFN 675
           V  + +      +     ++       +       ++            +   D      
Sbjct: 61  VLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGV 120

Query: 676 MSILAAYTRPSSKSEIVKVNLLASTDHCDKEC 707
           + ++       S +       L          
Sbjct: 121 VDVVEGLDGCHSANISPDNRTLWVPALKQDRI 152

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 7e-04
 Identities = 14/93 (15%), Positives = 32/93 (34%), Gaps = 2/93 (2%)

Query: 530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFA 589
            +  S              +  +  +      ++L        NI +Y +    ++    
Sbjct: 195 EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL 254

Query: 590 DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWD 622
           + HK+ +N + +    PS   +S  D  +K W+
Sbjct: 255 NAHKDGVNNLLWET--PSTLVSSGADACIKRWN 285

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.6 bits (90), Expect = 0.001
 Identities = 15/101 (14%), Positives = 41/101 (40%), Gaps = 2/101 (1%)

Query: 551 DQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFA 610
             +T++  ++  +   ++    +I  +DI++G   +VF D+H   I  +K ++       
Sbjct: 13  KAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD--LF 70

Query: 611 TSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHY 651
           T S+D  +K+       +      ++   +  +  +     
Sbjct: 71  TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADG 111

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 4/90 (4%), Positives = 25/90 (27%), Gaps = 1/90 (1%)

Query: 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHK 593
           +  G+              +  +  +       ++   K I ++++ + +  +      +
Sbjct: 222 TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR 281

Query: 594 EHINVVKFSNHSPSIFATSSFDQDVKLWDL 623
                +     +     + S +  +   + 
Sbjct: 282 IEDQQLGIIW-TKQALVSISANGFINFVNP 310

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	721
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.97
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.96
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.96
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.95
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.95
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.95
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.95
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.95
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.94
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.94
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.93
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.93
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.93
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.92
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.91
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.9
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.9
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.9
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.89
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.89
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.88
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.86
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.84
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.83
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.82
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.8
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.78
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.78
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.76
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.73
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.69
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.65
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.64
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.64
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.62
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.59
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.57
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.56
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.56
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.44
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.43
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.32
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.23
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.23
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.23
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.17
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.14
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.83
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.81
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.74
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.72
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.67
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.64
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.64
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.59
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.59
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.54
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.5
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.5
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.47
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.38
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.31
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.21
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.2
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.14
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.14
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.13
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.03
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.02
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.98
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.97
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.86
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.83
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.67
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.59
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.53
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.51
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.51
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.51
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.45
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.42
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.39
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.3
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.25
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.23
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.22
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.22
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.12
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.12
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.06
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.96
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	96.96
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	96.86
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	96.43
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.38
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	96.35
d2ifga3	156	High affinity nerve growth factor receptor, N-term	96.16
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	96.08
d2ifga3	156	High affinity nerve growth factor receptor, N-term	96.05
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	95.96
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	95.96
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	95.85
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	95.83
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.75
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	95.74
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	95.68
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	95.58
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.45
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	95.37
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.32
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	95.3
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	95.24
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.22
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	95.21
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	95.12
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	94.97
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	94.81
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	94.52
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.4
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	94.36
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	94.15
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.05
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	93.86
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	93.13
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	92.94
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	92.59
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	92.41
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	92.21
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	91.76
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	91.46
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	90.89
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	90.56
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	87.27
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	86.89
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	85.11
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	83.01
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	81.0
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	80.83
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	80.37

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=1.3e-28  Score=254.64  Aligned_cols=236  Identities=19%  Similarity=0.232  Sum_probs=198.2

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|++++|+| ++.+||+|+.||+|+|||+.+++.+..+.  +|..+|.+++|+ +++.++++|+.|+.+++|+.......
T Consensus        57 ~I~~l~~s~-~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~--~~~~~v~~v~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~  132 (340)
T d1tbga_          57 KIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAIP--LRSSWVMTCAYA-PSGNYVACGGLDNICSIYNLKTREGN  132 (340)
T ss_dssp             CEEEEEECT-TSSEEEEEETTTEEEEEETTTTEEEEEEE--CSCSCEEEEEEC-TTSSEEEEEETTCCEEEEESSSSCSC
T ss_pred             CEEEEEECC-CCCEEEEEECCCceeeeecccceeEEEEe--cccccEEeeEee-ccceeeeeecccceeecccccccccc
Confidence            599999999 99999999999999999999999999887  789999999998 78999999999999999998764431


Q ss_pred             ccc---cccCc---------------------------------ceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 004969          535 IRG---MHYGA---------------------------------GTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYD  578 (721)
Q Consensus       535 ~~~---~~~~~---------------------------------~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWD  578 (721)
                      ...   +.++.                                 ......+...+....+.+.+..+++++.|+.|++||
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d  212 (340)
T d1tbga_         133 VRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD  212 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred             cccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEE
Confidence            110   00000                                 011112345578888888899999999999999999


Q ss_pred             CCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeC
Q 004969          579 INSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGS  657 (721)
Q Consensus       579 l~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~  657 (721)
                      +++++.+..+.+ |...|++++|+|++ .++++|+.||.|++||++.......+....+...+ +++|+|+|++|++|+.
T Consensus       213 ~~~~~~~~~~~~-h~~~i~~v~~~p~~-~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~  290 (340)
T d1tbga_         213 VREGMCRQTFTG-HESDINAICFFPNG-NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD  290 (340)
T ss_dssp             TTTTEEEEEECC-CSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEET
T ss_pred             CCCCcEEEEEeC-CCCCeEEEEECCCC-CEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEEC
Confidence            999999999997 99999999999999 79999999999999999987654445445555555 8999999999999999


Q ss_pred             CCcEEEEEcC-CCc---ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          658 GTSMFVQSLR-GDP---FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       658 Dg~I~VWDl~-g~~---l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      ||.|++||+. +..   +..|...|.+++|+|++       ++|||||..
T Consensus       291 dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~-------~~l~s~s~D  333 (340)
T d1tbga_         291 DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG-------MAVATGSWD  333 (340)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-------SCEEEEETT
T ss_pred             CCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCC-------CEEEEEccC
Confidence            9999999987 333   55678899999999999       899999875

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=2.2e-28  Score=262.12  Aligned_cols=231  Identities=13%  Similarity=0.139  Sum_probs=187.9

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|+|++|+| ++++||+|+.||.|+|||..+++........+|.++|++++|+ +++++|++|+.|++|++||+.++...
T Consensus         9 pIt~~~~s~-dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fs-p~~~~l~s~s~D~~i~vWd~~~~~~~   86 (371)
T d1k8kc_           9 PISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA-PDSNRIVTCGTDRNAYVWTLKGRTWK   86 (371)
T ss_dssp             CCCEEEECT-TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEE-TTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred             CeEEEEECC-CCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEEC-CCCCEEEEEECCCeEEEEeecccccc
Confidence            489999999 9999999999999999999888644333334999999999998 68899999999999999999874321


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEE---EEEccccCCCeEEEEEcCCCCcEEEE
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRL---QVFADMHKEHINVVKFSNHSPSIFAT  611 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v---~~l~~~h~~~V~sI~fsPdg~~lLaS  611 (721)
                             .......+...|.+++|+|++..+++++.|+++++|++......   ......|...|.+++|+|++ .+|++
T Consensus        87 -------~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~-~~l~s  158 (371)
T d1k8kc_          87 -------PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS-VLLAA  158 (371)
T ss_dssp             -------EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS-SEEEE
T ss_pred             -------cccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccc-cceec
Confidence                   01111234567999999999999999999999999998765432   22233489999999999999 79999


Q ss_pred             EECCCcEEEEECCCCC----------------ceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC-CCc---
Q 004969          612 SSFDQDVKLWDLRQKP----------------IQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR-GDP---  670 (721)
Q Consensus       612 gs~DgtIrIWDlrs~~----------------~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~---  670 (721)
                      |+.|++|++||.....                .........|...+ +++|+|+|++|++++.|+.|++||+. +..   
T Consensus       159 ~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~  238 (371)
T d1k8kc_         159 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVAT  238 (371)
T ss_dssp             EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEE
T ss_pred             cccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceee
Confidence            9999999999986532                12345556777777 89999999999999999999999987 332   


Q ss_pred             ccccccCeEEEEECCCCCcccccccEEEEecC
Q 004969          671 FRDFNMSILAAYTRPSSKSEIVKVNLLASTDH  702 (721)
Q Consensus       671 l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~  702 (721)
                      +..+..+|.+++|+|++       .++|+|+.
T Consensus       239 ~~~~~~~v~s~~fs~d~-------~~la~g~d  263 (371)
T d1k8kc_         239 LASETLPLLAVTFITES-------SLVAAGHD  263 (371)
T ss_dssp             EECSSCCEEEEEEEETT-------EEEEEETT
T ss_pred             eecccccceeeeecCCC-------CEEEEEcC
Confidence            44556789999999999       88888753

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=4e-27  Score=238.94  Aligned_cols=227  Identities=13%  Similarity=0.210  Sum_probs=187.4

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEee--------------------------
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLK--------------------------  508 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp--------------------------  508 (721)
                      .|++++|+| ++++|++|+.||+|+|||+.+++.+..+.  +|...|.+++|+|                          
T Consensus        19 ~I~~l~~sp-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~--~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (317)
T d1vyhc1          19 PVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLK--GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIR   95 (317)
T ss_dssp             CEEEEEECS-SSSEEEEEESSSCEEEEETTTCCCCEEEC--CCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEE
T ss_pred             CeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCEEEEEe--CCCCcEEEEeeeccccccccccccccccccccccccccc
Confidence            599999999 89999999999999999999998888876  6777777777762                          


Q ss_pred             ---------------CCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCc
Q 004969          509 ---------------KYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKN  573 (721)
Q Consensus       509 ---------------~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~  573 (721)
                                     ++++.+++++.|+.+++||++++...         .....+...+.++++++++..+++++.|+.
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~  166 (317)
T d1vyhc1          96 TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV---------KTFTGHREWVRMVRPNQDGTLIASCSNDQT  166 (317)
T ss_dssp             CCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE---------EEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             ccccccccceeeeccCCCceEEeeccCcceeEeecccceee---------eEEccCCCcceeeecccCCCEEEEEeCCCe
Confidence                           23445666666666666666654321         111234567899999999999999999999


Q ss_pred             EEEEECCCCcEEEEEccccCCCeEEEEEcCCCC-------------------cEEEEEECCCcEEEEECCCCCceeEEEe
Q 004969          574 IALYDINSGRRLQVFADMHKEHINVVKFSNHSP-------------------SIFATSSFDQDVKLWDLRQKPIQPCYTA  634 (721)
Q Consensus       574 IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~-------------------~lLaSgs~DgtIrIWDlrs~~~~~~~~~  634 (721)
                      |++|++.+++.+..+.+ |...+.+++|+|++.                   ..+++|+.|+.|++||+++++  .+..+
T Consensus       167 v~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~--~~~~~  243 (317)
T d1vyhc1         167 VRVWVVATKECKAELRE-HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM--CLMTL  243 (317)
T ss_dssp             EEEEETTTCCEEEEECC-CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE--EEEEE
T ss_pred             EEEEeeccceeeEEEec-CCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCc--EEEEE
Confidence            99999999999999987 999999999988741                   368999999999999999984  46666


Q ss_pred             cCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC-CCc---ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          635 SSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR-GDP---FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       635 ~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~---l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      .+|...+ +++|+|++++|++|+.||.|++||++ ++.   +..|...|.+++|+|++       ++|++|+..
T Consensus       244 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~-------~~l~s~s~D  310 (317)
T d1vyhc1         244 VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTA-------PYVVTGSVD  310 (317)
T ss_dssp             ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSS-------SCEEEEETT
T ss_pred             eCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC-------CEEEEEeCC
Confidence            7777777 89999999999999999999999997 443   45677899999999999       899999875

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2e-26  Score=242.93  Aligned_cols=228  Identities=15%  Similarity=0.198  Sum_probs=189.4

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe---EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN---IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM  531 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~---~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~  531 (721)
                      .|+|++|+| ++++|++|+ ||.|+|||+.++.   .+......+|.+.|.+++|+ +++++|++|+.||+|++||+...
T Consensus        53 ~V~~v~fs~-~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s-~dg~~l~s~~~dg~i~iwd~~~~  129 (337)
T d1gxra_          53 VVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL-PDGCTLIVGGEASTLSIWDLAAP  129 (337)
T ss_dssp             CCCEEEECS-SSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEEC-TTSSEEEEEESSSEEEEEECCCC
T ss_pred             cEEEEEECC-CCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEc-CCCCEEEEeeccccccccccccc
Confidence            589999999 999999997 8999999997653   23344445899999999998 78899999999999999999875


Q ss_pred             CCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEE
Q 004969          532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFAT  611 (721)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaS  611 (721)
                      .....       .....+...+..++|+|++..+++++.|+.|++||+.+++......+ |...|.+++|+|++ ..+++
T Consensus       130 ~~~~~-------~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~-~~~~v~~l~~s~~~-~~~~~  200 (337)
T d1gxra_         130 TPRIK-------AELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG-HTDGASCIDISNDG-TKLWT  200 (337)
T ss_dssp             --EEE-------EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTS-SEEEE
T ss_pred             ccccc-------ccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccc-ccccc
Confidence            43111       11223456789999999999999999999999999999999888886 99999999999999 79999


Q ss_pred             EECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCc---ccccccCeEEEEECCCCC
Q 004969          612 SSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDP---FRDFNMSILAAYTRPSSK  688 (721)
Q Consensus       612 gs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~---l~~~~~~V~~v~fsP~~~  688 (721)
                      |+.|+.|++||+++++.  +..........+++|+|+++++++|+.|+.+++||++...   ...|...|.+++|+|++ 
T Consensus       201 ~~~d~~v~i~d~~~~~~--~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g-  277 (337)
T d1gxra_         201 GGLDNTVRSWDLREGRQ--LQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCG-  277 (337)
T ss_dssp             EETTSEEEEEETTTTEE--EEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTS-
T ss_pred             cccccccccccccccee--ecccccccceEEEEEcccccccceeccccccccccccccccccccccccccceEEECCCC-
Confidence            99999999999998854  3344433444589999999999999999999999998433   34557789999999999 


Q ss_pred             cccccccEEEEecCC
Q 004969          689 SEIVKVNLLASTDHC  703 (721)
Q Consensus       689 ~~~v~v~lLASgs~~  703 (721)
                            ..|++|+..
T Consensus       278 ------~~l~s~s~D  286 (337)
T d1gxra_         278 ------KWFVSTGKD  286 (337)
T ss_dssp             ------SEEEEEETT
T ss_pred             ------CEEEEEeCC
Confidence                  888888765

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.95  E-value=7.1e-27  Score=245.49  Aligned_cols=227  Identities=11%  Similarity=0.168  Sum_probs=180.2

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeC--CCeEEEEEcCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD--NGSLKLYDIRHMP  532 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~--DGtVrIWDi~~~~  532 (721)
                      .|++++|+| ++++||+|+.||+|+|||+.++.........+|.++|.+++|+ +++.++++++.  ++.+++|++++++
T Consensus        60 ~v~~~~~sp-~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s-~d~~~l~~~~~~~~~~~~v~~~~~~~  137 (311)
T d1nr0a1          60 QTTVAKTSP-SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWD-SESKRIAAVGEGRERFGHVFLFDTGT  137 (311)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEEC-TTSCEEEEEECCSSCSEEEEETTTCC
T ss_pred             CEEEEEEeC-CCCeEeccccCceEeeeeeeccccccccccccccCcccccccc-cccccccccccccccccccccccccc
Confidence            599999999 8999999999999999999887654333333889999999998 68889998885  4669999998865


Q ss_pred             CcccccccCcceeEeccCCCeEEEEEecCCCE-EEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEE
Q 004969          533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDEL-FLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFAT  611 (721)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~-lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaS  611 (721)
                      .. ..+        ..|...|.+++|+|+++. +++|+.|+.|++||+++++....+.+ |...|+++.|+|++ .++++
T Consensus       138 ~~-~~l--------~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~-~~~~i~~v~~~p~~-~~l~~  206 (311)
T d1nr0a1         138 SN-GNL--------TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE-HTKFVHSVRYNPDG-SLFAS  206 (311)
T ss_dssp             BC-BCC--------CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECC-CSSCEEEEEECTTS-SEEEE
T ss_pred             cc-ccc--------cccccccccccccccceeeeccccccccccccccccccccccccc-ccccccccccCccc-ccccc
Confidence            42 111        234567999999999886 67788999999999999999999887 99999999999999 79999


Q ss_pred             EECCCcEEEEECCCCCceeEEE-----ecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC-CCccccc------ccCe
Q 004969          612 SSFDQDVKLWDLRQKPIQPCYT-----ASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR-GDPFRDF------NMSI  678 (721)
Q Consensus       612 gs~DgtIrIWDlrs~~~~~~~~-----~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~l~~~------~~~V  678 (721)
                      |+.|+.|++||.+++.....+.     ..+|...+ +++|+|+|++|++|+.||.|+|||++ ++.++.+      ...+
T Consensus       207 ~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~  286 (311)
T d1nr0a1         207 TGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQ  286 (311)
T ss_dssp             EETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceE
Confidence            9999999999999875433322     12455666 89999999999999999999999988 3333322      2245


Q ss_pred             EEEEECCCCCcccccccEEEEecCC
Q 004969          679 LAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       679 ~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      .++.|+++         .|++++..
T Consensus       287 ~~~~~~~~---------~l~s~s~d  302 (311)
T d1nr0a1         287 LGIIWTKQ---------ALVSISAN  302 (311)
T ss_dssp             EEEEECSS---------CEEEEETT
T ss_pred             EEEEecCC---------EEEEEECC
Confidence            55666554         46666544

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.95  E-value=1.4e-26  Score=243.18  Aligned_cols=226  Identities=12%  Similarity=0.085  Sum_probs=192.0

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI  535 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~  535 (721)
                      +..++++| +++.++.++ ++.|.+|++.++.....+.  +|...|++++|+ +++++|++|+.||+|++||+.++....
T Consensus        20 ~~~~a~~~-~g~~l~~~~-~~~v~i~~~~~~~~~~~~~--~H~~~v~~~~~s-p~g~~latg~~dg~i~iwd~~~~~~~~   94 (311)
T d1nr0a1          20 AVVLGNTP-AGDKIQYCN-GTSVYTVPVGSLTDTEIYT--EHSHQTTVAKTS-PSGYYCASGDVHGNVRIWDTTQTTHIL   94 (311)
T ss_dssp             CCCCEECT-TSSEEEEEE-TTEEEEEETTCSSCCEEEC--CCSSCEEEEEEC-TTSSEEEEEETTSEEEEEESSSTTCCE
T ss_pred             eEEEEEcC-CCCEEEEEe-CCEEEEEECCCCceeEEEc--CCCCCEEEEEEe-CCCCeEeccccCceEeeeeeecccccc
Confidence            56789999 889998886 5679999999998888886  899999999998 689999999999999999999865421


Q ss_pred             cccccCcceeEeccCCCeEEEEEecCCCEEEEEeC--CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969          536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY--SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS  613 (721)
Q Consensus       536 ~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~--Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs  613 (721)
                      .       .....|..+|.+++|+|++..+++++.  +..+++|++.+++....+.+ |...|++++|+|+++..+++|+
T Consensus        95 ~-------~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~-h~~~v~~v~~~~~~~~~l~sgs  166 (311)
T d1nr0a1          95 K-------TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTG-QARAMNSVDFKPSRPFRIISGS  166 (311)
T ss_dssp             E-------EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCC-CSSCEEEEEECSSSSCEEEEEE
T ss_pred             c-------cccccccCccccccccccccccccccccccccccccccccccccccccc-cccccccccccccceeeecccc
Confidence            1       112235678999999999999999986  46699999999999888887 9999999999999966799999


Q ss_pred             CCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCC-Cc----------ccccccCeEEE
Q 004969          614 FDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRG-DP----------FRDFNMSILAA  681 (721)
Q Consensus       614 ~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g-~~----------l~~~~~~V~~v  681 (721)
                      .|+.|++||+++++.  ......|...+ ++.|+|+++++++++.|+.|++||++. ..          ...|...|.++
T Consensus       167 ~d~~i~i~d~~~~~~--~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~  244 (311)
T d1nr0a1         167 DDNTVAIFEGPPFKF--KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGL  244 (311)
T ss_dssp             TTSCEEEEETTTBEE--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEE
T ss_pred             ccccccccccccccc--ccccccccccccccccCcccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999998743  55666777777 899999999999999999999999862 21          23456789999


Q ss_pred             EECCCCCcccccccEEEEecCC
Q 004969          682 YTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       682 ~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      +|+|++       ..|++|+..
T Consensus       245 ~~s~~~-------~~l~tgs~D  259 (311)
T d1nr0a1         245 TWSPDG-------TKIASASAD  259 (311)
T ss_dssp             EECTTS-------SEEEEEETT
T ss_pred             ccCCCC-------CEEEEEeCC
Confidence            999999       899998865

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.6e-26  Score=240.92  Aligned_cols=223  Identities=11%  Similarity=0.187  Sum_probs=191.1

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe--EEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN--IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP  532 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~--~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~  532 (721)
                      .|++++|+| ++++|++|+.||+|++||+....  ....+.  +|...|..++|+ +++.++++++.|+.|++|++.+++
T Consensus        99 ~I~~v~~s~-dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~-~~~~~l~s~~~d~~i~~~~~~~~~  174 (337)
T d1gxra_          99 YIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELT--SSAPACYALAIS-PDSKVCFSCCSDGNIAVWDLHNQT  174 (337)
T ss_dssp             BEEEEEECT-TSSEEEEEESSSEEEEEECCCC--EEEEEEE--CSSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTE
T ss_pred             cEEEEEEcC-CCCEEEEeecccccccccccccccccccccc--cccccccccccc-cccccccccccccccccccccccc
Confidence            599999999 99999999999999999987554  444444  888999999998 788999999999999999998854


Q ss_pred             CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969          533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS  612 (721)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg  612 (721)
                      ..         .....+...|.+++|++++..+++++.|+.+++||+++++.+..+.  |...|.+++|+|++ ..+++|
T Consensus       175 ~~---------~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~--~~~~i~~l~~~~~~-~~l~~~  242 (337)
T d1gxra_         175 LV---------RQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD--FTSQIFSLGYCPTG-EWLAVG  242 (337)
T ss_dssp             EE---------EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECTTS-SEEEEE
T ss_pred             cc---------ccccccccccccccccccccccccccccccccccccccceeecccc--cccceEEEEEcccc-ccccee
Confidence            31         2233456789999999999999999999999999999999998886  89999999999999 799999


Q ss_pred             ECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC-CCccc--ccccCeEEEEECCCCC
Q 004969          613 SFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR-GDPFR--DFNMSILAAYTRPSSK  688 (721)
Q Consensus       613 s~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~l~--~~~~~V~~v~fsP~~~  688 (721)
                      +.|+.|++||++++..   .....|...+ +++|+|+|++|++|+.||.|++||+. +..+.  .|...|.+++|+|++ 
T Consensus       243 ~~d~~i~i~d~~~~~~---~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~-  318 (337)
T d1gxra_         243 MESSNVEVLHVNKPDK---YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDD-  318 (337)
T ss_dssp             ETTSCEEEEETTSSCE---EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTS-
T ss_pred             cccccccccccccccc---ccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCCCCEEEEEEeCCC-
Confidence            9999999999998753   3345566666 89999999999999999999999998 44433  346789999999999 


Q ss_pred             cccccccEEEEecCC
Q 004969          689 SEIVKVNLLASTDHC  703 (721)
Q Consensus       689 ~~~v~v~lLASgs~~  703 (721)
                            .+||+|+..
T Consensus       319 ------~~l~t~s~D  327 (337)
T d1gxra_         319 ------KYIVTGSGD  327 (337)
T ss_dssp             ------CEEEEEETT
T ss_pred             ------CEEEEEeCC
Confidence                  899998875

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.95  E-value=9.4e-26  Score=231.65  Aligned_cols=236  Identities=12%  Similarity=0.085  Sum_probs=180.3

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|++++|+| ++++|++|+.||+|++||+++++....+.. +|...|++++|+ +++. +++++.|+.+++|+.......
T Consensus        14 ~V~~l~~s~-dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~-~h~~~v~~v~~~-~~g~-~~~~~~d~~v~~~~~~~~~~~   89 (299)
T d1nr0a2          14 AITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPD-VHATMITGIKTT-SKGD-LFTVSWDDHLKVVPAGGSGVD   89 (299)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEECSSC-SCSSCEEEEEEC-TTSC-EEEEETTTEEEEECSSSSSSC
T ss_pred             CcEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEcC-CCCCcEEEEEee-ccce-eecccceeeEEEeccCCcccc
Confidence            599999999 999999999999999999999998877643 789999999998 5655 667788999999998653321


Q ss_pred             cc-----cccc--------------------------CcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 004969          535 IR-----GMHY--------------------------GAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR  583 (721)
Q Consensus       535 ~~-----~~~~--------------------------~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~  583 (721)
                      ..     ....                          ............+.+++++|++..+++++.||.|++||+++++
T Consensus        90 ~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~  169 (299)
T d1nr0a2          90 SSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS  169 (299)
T ss_dssp             TTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            00     0000                          0011111233457889999999999999999999999999887


Q ss_pred             EEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCce-eEEEecCCCCeE-EEEEecCCCEEEEEeCCCcE
Q 004969          584 RLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQ-PCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSM  661 (721)
Q Consensus       584 ~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~-~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I  661 (721)
                      ........|...|++++|+|++ .++++++.|+.|++||+.++... ....+.+|...+ +++|+|++.+|++|+.||.|
T Consensus       170 ~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i  248 (299)
T d1nr0a2         170 VSEVKTIVHPAEITSVAFSNNG-AFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSV  248 (299)
T ss_dssp             EEEEEEEECSSCEEEEEECTTS-SEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             cccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEE
Confidence            6544333489999999999999 79999999999999999876432 233455677776 89999999999999999999


Q ss_pred             EEEEcCCCc---c---ccc-ccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          662 FVQSLRGDP---F---RDF-NMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       662 ~VWDl~g~~---l---~~~-~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      ++||++...   .   ..+ ...+..+.|. ++       ..|++|+..
T Consensus       249 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~-------~~l~s~s~D  289 (299)
T d1nr0a2         249 IVWNMNKPSDHPIIIKGAHAMSSVNSVIWL-NE-------TTIVSAGQD  289 (299)
T ss_dssp             EEEETTCTTSCCEEETTSSTTSCEEEEEEE-ET-------TEEEEEETT
T ss_pred             EEEECCCCCcceEEEecCCCCCcEEEEEEC-CC-------CEEEEEeCC
Confidence            999987321   1   122 2356666654 45       678888765

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.7e-24  Score=229.59  Aligned_cols=227  Identities=22%  Similarity=0.357  Sum_probs=184.3

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|++++|+| ++++|++|+.||.|++||..+++.+....  +|...|.+++|+ +++..+++|+.+|.+++||..+... 
T Consensus       123 ~V~~l~~s~-~~~~l~s~~~dg~v~i~~~~~~~~~~~~~--~h~~~v~~~~~~-~~~~~~~~~~~~~~i~~~d~~~~~~-  197 (388)
T d1erja_         123 YIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQ--GHEQDIYSLDYF-PSGDKLVSGSGDRTVRIWDLRTGQC-  197 (388)
T ss_dssp             BEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEE-
T ss_pred             CEEEEEECC-CCCcceecccccccccccccccccccccc--cccccccccccc-cccccccccccceeeeeeecccccc-
Confidence            599999999 99999999999999999999999988876  899999999998 6888999999999999999987433 


Q ss_pred             ccccccCcceeEeccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCcEEEEEc------cccCCCeEEEEEcCCCCc
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNS-MDELFLASGYSKNIALYDINSGRRLQVFA------DMHKEHINVVKFSNHSPS  607 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp-~~~~lls~g~Dg~IrlWDl~s~~~v~~l~------~~h~~~V~sI~fsPdg~~  607 (721)
                               .....+.....++.+++ ++..+++++.|+.|++||.+++..+..+.      .+|...|.+++|+|++ .
T Consensus       198 ---------~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~  267 (388)
T d1erja_         198 ---------SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG-Q  267 (388)
T ss_dssp             ---------EEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS-S
T ss_pred             ---------ccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCC-C
Confidence                     22333444555666655 56788888999999999999998877654      1388899999999999 7


Q ss_pred             EEEEEECCCcEEEEECCCCCce----------eEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC-CCc---cc
Q 004969          608 IFATSSFDQDVKLWDLRQKPIQ----------PCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR-GDP---FR  672 (721)
Q Consensus       608 lLaSgs~DgtIrIWDlrs~~~~----------~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~---l~  672 (721)
                      ++++|+.||.|++||++++...          .......|...+ +++|+|+|++|++|+.||.|++||++ ++.   +.
T Consensus       268 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~  347 (388)
T d1erja_         268 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ  347 (388)
T ss_dssp             EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEe
Confidence            9999999999999999875321          122334455555 89999999999999999999999998 443   55


Q ss_pred             ccccCeEEEEE------CCCCCcccccccEEEEecCC
Q 004969          673 DFNMSILAAYT------RPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       673 ~~~~~V~~v~f------sP~~~~~~v~v~lLASgs~~  703 (721)
                      .|...|.++++      +|++       ++||||+..
T Consensus       348 ~H~~~V~~~~~~~~~~~spd~-------~~l~s~s~D  377 (388)
T d1erja_         348 GHRNSVISVAVANGSSLGPEY-------NVFATGSGD  377 (388)
T ss_dssp             CCSSCEEEEEECSSCTTCTTC-------EEEEEEETT
T ss_pred             CCCCCEEEEEEecCcccCCCC-------CEEEEEeCC
Confidence            67788998875      5666       899999876

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.5e-24  Score=229.94  Aligned_cols=228  Identities=13%  Similarity=0.210  Sum_probs=183.7

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeec----------------CCCCCCeEEEEEeeCCCCEEEEEe
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPS----------------FGAMNSVLGLCWLKKYPSKLIAGS  518 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~----------------~~H~~~V~sl~fsp~d~~~LaSgs  518 (721)
                      .|+|++|+| +|++||+|+ ||+|+|||+.+++.+..+..                .+|...|++++|+ +++++|++|+
T Consensus        64 ~V~~l~fs~-dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~~~l~s~~  140 (388)
T d1erja_          64 VVCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS-PDGKFLATGA  140 (388)
T ss_dssp             CCCEEEECT-TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEEC-TTSSEEEEEE
T ss_pred             cEEEEEECC-CCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEEC-CCCCcceecc
Confidence            599999999 999999987 89999999999888766542                2567789999998 6899999999


Q ss_pred             CCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEE
Q 004969          519 DNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINV  598 (721)
Q Consensus       519 ~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~s  598 (721)
                      .||+|++||...++..         .....|...|.++++++++..+++++.++.+++||.++........  +.....+
T Consensus       141 ~dg~v~i~~~~~~~~~---------~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~  209 (388)
T d1erja_         141 EDRLIRIWDIENRKIV---------MILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS--IEDGVTT  209 (388)
T ss_dssp             TTSCEEEEETTTTEEE---------EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEE
T ss_pred             cccccccccccccccc---------cccccccccccccccccccccccccccceeeeeeeccccccccccc--ccccccc
Confidence            9999999999875431         1222356789999999999999999999999999999988887776  4455566


Q ss_pred             EEEcCCCCcEEEEEECCCcEEEEECCCCCceeEE-----EecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCc--
Q 004969          599 VKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCY-----TASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDP--  670 (721)
Q Consensus       599 I~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~-----~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~--  670 (721)
                      +.+.|..+.++++|+.||.|++||.+++......     ...+|...+ +++|+|++++|++|+.||.|++||++...  
T Consensus       210 ~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~  289 (388)
T d1erja_         210 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK  289 (388)
T ss_dssp             EEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------
T ss_pred             ccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccc
Confidence            6676654489999999999999999987543322     223456666 89999999999999999999999986211  


Q ss_pred             --------------ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          671 --------------FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       671 --------------l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                                    ...|...|.+++|+|++       .+|++|+..
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-------~~l~sg~~d  329 (388)
T d1erja_         290 SDSKTPNSGTCEVTYIGHKDFVLSVATTQND-------EYILSGSKD  329 (388)
T ss_dssp             ---------CEEEEEECCSSCEEEEEECGGG-------CEEEEEETT
T ss_pred             cccccccccceeeecccccceEEEEEECCCC-------CEEEEEeCC
Confidence                          12345689999999999       888888875

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=8.8e-24  Score=216.80  Aligned_cols=235  Identities=12%  Similarity=0.166  Sum_probs=173.9

Q ss_pred             ccCCCCCCCCCccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCC
Q 004969          442 VSGNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG  521 (721)
Q Consensus       442 ~~gh~~~~~~~~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DG  521 (721)
                      +.||...+      +.|+  ++ +|++||||+.||+|+|||+.+++++.++.  +|.+.|.+++|+   +++|++|+.|+
T Consensus        12 l~GH~~~V------~s~~--~~-~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~--~h~~~V~~v~~~---~~~l~s~s~D~   77 (342)
T d2ovrb2          12 LKGHDDHV------ITCL--QF-CGNRIVSGSDDNTLKVWSAVTGKCLRTLV--GHTGGVWSSQMR---DNIIISGSTDR   77 (342)
T ss_dssp             EECSTTSC------EEEE--EE-ETTEEEEEETTSCEEEEETTTCCEEEECC--CCSSCEEEEEEE---TTEEEEEETTS
T ss_pred             ECCcCCce------EEEE--EE-CCCEEEEEeCCCeEEEEECCCCCEEEEEe--CCCCCEEEEEeC---CCccccceecc
Confidence            34676632      3444  44 56899999999999999999999999887  899999999997   35999999999


Q ss_pred             eEEEEEcCCCCCcccccc----------------------------------------------------------cCcc
Q 004969          522 SLKLYDIRHMPPSIRGMH----------------------------------------------------------YGAG  543 (721)
Q Consensus       522 tVrIWDi~~~~~~~~~~~----------------------------------------------------------~~~~  543 (721)
                      ++++|+............                                                          ....
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  157 (342)
T d2ovrb2          78 TLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDF  157 (342)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTS
T ss_pred             cccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCC
Confidence            999999875322100000                                                          0000


Q ss_pred             e------------eEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEE
Q 004969          544 T------------VTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFAT  611 (721)
Q Consensus       544 ~------------~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaS  611 (721)
                      .            ..+. ........+.+++..+++++.||.|++||++.++.+..+.+ |...+.++++++   .++++
T Consensus       158 ~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~-~~~~v~~~~~~~---~~l~s  232 (342)
T d2ovrb2         158 MVKVWDPETETCLHTLQ-GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTG-HQSLTSGMELKD---NILVS  232 (342)
T ss_dssp             CEEEEEGGGTEEEEEEC-CCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECC-CCSCEEEEEEET---TEEEE
T ss_pred             eEEEeecccceeeEEEc-CcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecc-cccceeEEecCC---CEEEE
Confidence            0            0000 01122334455788999999999999999999999999987 999999988875   58999


Q ss_pred             EECCCcEEEEECCCCCceeEEEec-CCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC-CCccc--------ccccCeEEE
Q 004969          612 SSFDQDVKLWDLRQKPIQPCYTAS-SSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR-GDPFR--------DFNMSILAA  681 (721)
Q Consensus       612 gs~DgtIrIWDlrs~~~~~~~~~~-~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~l~--------~~~~~V~~v  681 (721)
                      |+.|+.|++||+...+........ .|... ..+++++++++++|+.||.|++||++ ++.++        +|...|.++
T Consensus       233 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v  311 (342)
T d2ovrb2         233 GNADSTVKIWDIKTGQCLQTLQGPNKHQSA-VTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRI  311 (342)
T ss_dssp             EETTSCEEEEETTTCCEEEEECSTTSCSSC-EEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEE
T ss_pred             EcCCCEEEEEecccccccccccccceeeec-eeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEE
Confidence            999999999999987543333221 22222 34455567899999999999999997 44433        345579999


Q ss_pred             EECCCCCcccccccEEEEecCC
Q 004969          682 YTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       682 ~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      +|+|++       .++|+|+..
T Consensus       312 ~~s~~~-------~~la~g~~d  326 (342)
T d2ovrb2         312 RASNTK-------LVCAVGSRN  326 (342)
T ss_dssp             EECSSE-------EEEEEECSS
T ss_pred             EECCCC-------CEEEEEeCC
Confidence            999999       899999876

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=2.6e-23  Score=214.39  Aligned_cols=233  Identities=15%  Similarity=0.249  Sum_probs=176.3

Q ss_pred             ccCCCCCCCCCccCeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCC
Q 004969          442 VSGNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG  521 (721)
Q Consensus       442 ~~gh~~~~~~~~~~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DG  521 (721)
                      +.||....      ++|++|+   +++||+|+.||+|+|||+.+++.+.++.  +|.++|++++|+ + +++|++|+.||
T Consensus         8 L~GH~~~v------itc~~~~---~~~l~tgs~Dg~i~vWd~~~~~~~~~l~--~H~~~V~~l~~s-~-~~~l~s~s~D~   74 (355)
T d1nexb2           8 LRGHMTSV------ITCLQFE---DNYVITGADDKMIRVYDSINKKFLLQLS--GHDGGVWALKYA-H-GGILVSGSTDR   74 (355)
T ss_dssp             EECCSSSC------EEEEEEE---TTEEEEEETTTEEEEEETTTTEEEEEEE--CCSSCEEEEEEE-T-TTEEEEEETTC
T ss_pred             ECCcCCCc------EEEEEEC---CCEEEEEeCCCeEEEEECCCCcEEEEEE--CCCCCEEEEEEc-C-CCEEEEEeccc
Confidence            34776532      5777765   5899999999999999999999999988  899999999998 3 46899999999


Q ss_pred             eEEEEEcCCCCCccccc---------------------c-c---------------------------------------
Q 004969          522 SLKLYDIRHMPPSIRGM---------------------H-Y---------------------------------------  540 (721)
Q Consensus       522 tVrIWDi~~~~~~~~~~---------------------~-~---------------------------------------  540 (721)
                      +|++|++..........                     . .                                       
T Consensus        75 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (355)
T d1nexb2          75 TVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV  154 (355)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEE
T ss_pred             ccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceecccccccee
Confidence            99999887532100000                     0 0                                       


Q ss_pred             -----C-----------c--------cee------------Ee-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 004969          541 -----G-----------A--------GTV------------TF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR  583 (721)
Q Consensus       541 -----~-----------~--------~~~------------~~-~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~  583 (721)
                           +           .        ..+            .. .+...+.++.+++.+..+++++.|+.|++||.+++.
T Consensus       155 ~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~  234 (355)
T d1nexb2         155 GVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE  234 (355)
T ss_dssp             EEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCC
T ss_pred             eeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccc
Confidence                 0           0        000            00 123456788899999999999999999999999999


Q ss_pred             EEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEE
Q 004969          584 RLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMF  662 (721)
Q Consensus       584 ~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~  662 (721)
                      .+..+.+ |...|.+++|++   .++++|+.||+|++||+++...  ...... .... ...+++++.++++|+ ||.|+
T Consensus       235 ~~~~~~~-h~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~--~~~~~~-~~~~~~~~~~~~~~~l~~g~-d~~i~  306 (355)
T d1nexb2         235 LMYTLQG-HTALVGLLRLSD---KFLVSAAADGSIRGWDANDYSR--KFSYHH-TNLSAITTFYVSDNILVSGS-ENQFN  306 (355)
T ss_dssp             EEEEECC-CSSCCCEEEECS---SEEEEECTTSEEEEEETTTCCE--EEEEEC-TTCCCCCEEEECSSEEEEEE-TTEEE
T ss_pred             ccccccc-cccccccccccc---ceeeeeecccccccccccccce--eccccc-CCceEEEEEcCCCCEEEEEe-CCEEE
Confidence            9999997 999999999975   5899999999999999998743  333322 2223 356778888887765 89999


Q ss_pred             EEEcC-CCc----ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          663 VQSLR-GDP----FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       663 VWDl~-g~~----l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      +||++ |+.    +.+|...|.+++|+|+        .++++++..
T Consensus       307 vwd~~tg~~~~~~~~~~~~~V~~v~~~~~--------~~~~~~s~d  344 (355)
T d1nexb2         307 IYNLRSGKLVHANILKDADQIWSVNFKGK--------TLVAAVEKD  344 (355)
T ss_dssp             EEETTTCCBCCSCTTTTCSEEEEEEEETT--------EEEEEEESS
T ss_pred             EEECCCCCEEEEEecCCCCCEEEEEEcCC--------eEEEEEECC
Confidence            99997 443    3456778999999986        467777665

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=6.7e-24  Score=226.83  Aligned_cols=199  Identities=14%  Similarity=0.055  Sum_probs=164.0

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|++++|+| ++++|++|+.||+|+|||+.++.....+...+|...|++++|+ ++++.|++|+.|++|++|++......
T Consensus        53 ~V~~l~fsp-~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~-p~~~~l~~~s~d~~i~i~~~~~~~~~  130 (371)
T d1k8kc_          53 QVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWA-PNEKKFAVGSGSRVISICYFEQENDW  130 (371)
T ss_dssp             CEEEEEEET-TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEEC-TTSSEEEEEETTSSEEEEEEETTTTE
T ss_pred             CEEEEEECC-CCCEEEEEECCCeEEEEeecccccccccccccccccccccccc-cccccceeecccCcceeeeeeccccc
Confidence            599999999 9999999999999999999988877666666889999999998 68899999999999999999875442


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC------------------cEEEEEccccCCCe
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSG------------------RRLQVFADMHKEHI  596 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~------------------~~v~~l~~~h~~~V  596 (721)
                      ...     ......+...|.+++|+|++..+++++.|++|++||....                  +.+....+ |...|
T Consensus       131 ~~~-----~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v  204 (371)
T d1k8kc_         131 WVC-----KHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS-SCGWV  204 (371)
T ss_dssp             EEE-----EEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC-CSSCE
T ss_pred             ccc-----cccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccC-ccCcE
Confidence            110     0111234567999999999999999999999999998643                  34455555 89999


Q ss_pred             EEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEE
Q 004969          597 NVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQS  665 (721)
Q Consensus       597 ~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWD  665 (721)
                      .+++|+|++ .++++++.|++|++||+.++..  +..+..|..++ +++|+|++.+|++|+ |+.+++|.
T Consensus       205 ~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~  270 (371)
T d1k8kc_         205 HGVCFSANG-SRVAWVSHDSTVCLADADKKMA--VATLASETLPLLAVTFITESSLVAAGH-DCFPVLFT  270 (371)
T ss_dssp             EEEEECSSS-SEEEEEETTTEEEEEEGGGTTE--EEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEE
T ss_pred             EEEEeeccc-ccccccccCCcceEEeeecccc--eeeeecccccceeeeecCCCCEEEEEc-CCceEEEE
Confidence            999999999 7999999999999999998754  55566677666 899999998888665 77666654

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=1.1e-23  Score=213.20  Aligned_cols=194  Identities=13%  Similarity=0.187  Sum_probs=166.9

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .+.++.|+| ++..+++++.|+.+++||+.+++....+.  +|...+.+++|+ +++.+|++++.||.|++|++.++...
T Consensus       103 ~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~l~~~~~d~~v~~~~~~~~~~~  178 (317)
T d1vyhc1         103 NVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFT--GHREWVRMVRPN-QDGTLIASCSNDQTVRVWVVATKECK  178 (317)
T ss_dssp             CEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             cceeeeccC-CCceEEeeccCcceeEeecccceeeeEEc--cCCCcceeeecc-cCCCEEEEEeCCCeEEEEeeccceee
Confidence            588999999 89999999999999999999999988887  888999999998 78899999999999999999886542


Q ss_pred             ccccccCcceeEeccCCCeEEEEEec--------------------CCCEEEEEeCCCcEEEEECCCCcEEEEEccccCC
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNS--------------------MDELFLASGYSKNIALYDINSGRRLQVFADMHKE  594 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp--------------------~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~  594 (721)
                      . .+.        .+...+.++.++|                    .+..+++++.|+.|++||+++++++..+.+ |..
T Consensus       179 ~-~~~--------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-~~~  248 (317)
T d1vyhc1         179 A-ELR--------EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG-HDN  248 (317)
T ss_dssp             E-EEC--------CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEEC-CSS
T ss_pred             E-EEe--------cCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeC-CCC
Confidence            1 111        1223344555443                    456788999999999999999999999997 999


Q ss_pred             CeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEE
Q 004969          595 HINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQS  665 (721)
Q Consensus       595 ~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWD  665 (721)
                      .|.+++|+|++ .+|++|+.||.|++||+++++.  +..+.+|...+ +++|+|++++|++|+.||.|+|||
T Consensus       249 ~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~--~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         249 WVRGVLFHSGG-KFILSCADDKTLRVWDYKNKRC--MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CEEEEEECSSS-SCEEEEETTTEEEEECCTTSCC--CEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CEEEEEECCCC-CEEEEEECCCeEEEEECCCCcE--EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            99999999999 7999999999999999998855  55667777777 899999999999999999999997

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.4e-22  Score=201.33  Aligned_cols=223  Identities=15%  Similarity=0.235  Sum_probs=172.9

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|+|++|   ++++||+|+.||+|+|||+.+++++.++.  +|.++|++++|   ++++|++|+.||+|++|++..+...
T Consensus        17 ~V~c~~~---d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~--~H~~~V~~v~~---~~~~l~s~s~D~~i~~~~~~~~~~~   88 (293)
T d1p22a2          17 GVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILT--GHTGSVLCLQY---DERVIITGSSDSTVRVWDVNTGEML   88 (293)
T ss_dssp             CEEEEEC---CSSEEEEEESSSCEEEEESSSCCEEEEEC--CCSSCEEEEEC---CSSEEEEEETTSCEEEEESSSCCEE
T ss_pred             CEEEEEE---cCCEEEEEeCCCeEEEEECCCCcEEEEEe--cCCCCEeeeec---ccceeeccccccccccccccccccc
Confidence            4888754   67999999999999999999999999997  89999999987   4689999999999999999875432


Q ss_pred             cccccc-------------------Cc---------------ceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 004969          535 IRGMHY-------------------GA---------------GTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDIN  580 (721)
Q Consensus       535 ~~~~~~-------------------~~---------------~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~  580 (721)
                      ......                   ..               ......+...+....+  ....+++++.|+.|++||++
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~s~d~~i~~~d~~  166 (293)
T d1p22a2          89 NTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTS  166 (293)
T ss_dssp             EEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT
T ss_pred             ccccccccccccccccccceeecccccceeEeecccccccccccccccccccccccee--cccccccccCCCceeeecCC
Confidence            111100                   00               0001123344555555  45778889999999999999


Q ss_pred             CCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCc
Q 004969          581 SGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTS  660 (721)
Q Consensus       581 s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~  660 (721)
                      +++.+..+.+ +...+..+.+++   ..+++++.||+|++||+++...  +....++...+ ..+++++.+|++|+.||.
T Consensus       167 ~~~~~~~~~~-~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v-~~~~~~~~~l~sg~~dg~  239 (293)
T d1p22a2         167 TCEFVRTLNG-HKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGAC--LRVLEGHEELV-RCIRFDNKRIVSGAYDGK  239 (293)
T ss_dssp             TCCEEEEEEC-CSSCEEEEEEET---TEEEEEETTSCEEEEETTTCCE--EEEECCCSSCE-EEEECCSSEEEEEETTSC
T ss_pred             CCcEEEEEcc-cccccccccCCC---CeEEEecCCCEEEEEeccccee--eeeecccceee-eeccccceEEEEEcCCCE
Confidence            9999999987 888898888864   5799999999999999998754  45556666665 357788999999999999


Q ss_pred             EEEEEcCC-------------CcccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          661 MFVQSLRG-------------DPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       661 I~VWDl~g-------------~~l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      |++||+..             ..+..|...|.+++|+|         ..|+|||..
T Consensus       240 i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~---------~~l~s~s~D  286 (293)
T d1p22a2         240 IKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE---------FQIVSSSHD  286 (293)
T ss_dssp             EEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECS---------SCEEECCSS
T ss_pred             EEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcC---------CEEEEEecC
Confidence            99999751             12345677888888864         458888765

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=1.2e-22  Score=207.38  Aligned_cols=241  Identities=14%  Similarity=0.126  Sum_probs=169.0

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEE-eecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSY-IPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~-l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~  533 (721)
                      .|++|+|+| ++++||+|+.||+|+|||+.++..... ....+|..+|++++|+|.++.+|++|+.||+|++|++.....
T Consensus        13 ~I~~l~fsp-~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~   91 (342)
T d1yfqa_          13 YISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS   91 (342)
T ss_dssp             CEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSS
T ss_pred             CEEEEEEeC-CCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccc
Confidence            599999999 899999999999999999976543222 222378999999999977778999999999999999987554


Q ss_pred             cccccccCc---------------------ceeEe-------------------ccCCCeEEEEEecCCCEEEEEeCCCc
Q 004969          534 SIRGMHYGA---------------------GTVTF-------------------DEFDQLTSVHVNSMDELFLASGYSKN  573 (721)
Q Consensus       534 ~~~~~~~~~---------------------~~~~~-------------------~~~~~V~sv~~sp~~~~lls~g~Dg~  573 (721)
                      .........                     ..+..                   ..........+.+.+..+++++.|+.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  171 (342)
T d1yfqa_          92 FQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQ  171 (342)
T ss_dssp             EEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTE
T ss_pred             cccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCc
Confidence            211110000                     00000                   00112334556677888999999999


Q ss_pred             EEEEECCCCcEEEEE--ccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCcee------EEE-------ecCCC
Q 004969          574 IALYDINSGRRLQVF--ADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQP------CYT-------ASSSK  638 (721)
Q Consensus       574 IrlWDl~s~~~v~~l--~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~------~~~-------~~~~~  638 (721)
                      |++||++.++.....  ...+...+.+..+.|..+..+++++.||.+.+|+........      ...       ..++.
T Consensus       172 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (342)
T d1yfqa_         172 VQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLA  251 (342)
T ss_dssp             EEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSC
T ss_pred             EEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCccc
Confidence            999999876533221  112556677777776665899999999999999986532110      111       12333


Q ss_pred             CeE-EEEEecCCCEEEEEeCCCcEEEEEcC-CCccccc--ccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          639 GNV-MVCFSPDDHYLLGKGSGTSMFVQSLR-GDPFRDF--NMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       639 ~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~l~~~--~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      ..+ +++|+|++++|++|+.||.|++||++ ++.+..+  ...+..++|+|++       .++|+|+..
T Consensus       252 ~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~-------~~l~~a~sd  313 (342)
T d1yfqa_         252 YPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSD-------NILCLATSD  313 (342)
T ss_dssp             CCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECS-------SEEEEEEEC
T ss_pred             ccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCC-------CEEEEEEcC
Confidence            344 89999999999999999999999998 3344433  2355667888888       777776654

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=5.7e-22  Score=204.13  Aligned_cols=196  Identities=15%  Similarity=0.208  Sum_probs=161.4

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCe----EEEEee-------------------------------------
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN----IVSYIP-------------------------------------  493 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~----~i~~l~-------------------------------------  493 (721)
                      .|++++|+| ++.++++|+.|+.|++|+.....    ....+.                                     
T Consensus        99 ~v~~v~~~~-~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (340)
T d1tbga_          99 WVMTCAYAP-SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQT  177 (340)
T ss_dssp             CEEEEEECT-TSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEE
T ss_pred             cEEeeEeec-cceeeeeecccceeecccccccccccccceeccccccccccccccccccccccccccccccccccccccc
Confidence            599999999 99999999999999999965321    111111                                     


Q ss_pred             --cCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEe-ccCCCeEEEEEecCCCEEEEEeC
Q 004969          494 --SFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGY  570 (721)
Q Consensus       494 --~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~  570 (721)
                        ...+...+....+. +...++++|+.|+.|++||+++++.          ...+ .|...|++++|+|++..+++++.
T Consensus       178 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~v~i~d~~~~~~----------~~~~~~h~~~i~~v~~~p~~~~l~s~s~  246 (340)
T d1tbga_         178 TTFTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDVREGMC----------RQTFTGHESDINAICFFPNGNAFATGSD  246 (340)
T ss_dssp             EEEECCSSCEEEEEEC-TTSSEEEEEETTTEEEEEETTTTEE----------EEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             ccccccceeEeeeccc-cccceeEEeecCceEEEEECCCCcE----------EEEEeCCCCCeEEEEECCCCCEEEEEeC
Confidence              01344556666665 6778999999999999999988543          1222 35678999999999999999999


Q ss_pred             CCcEEEEECCCCcEEEEEcc-ccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecC
Q 004969          571 SKNIALYDINSGRRLQVFAD-MHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPD  648 (721)
Q Consensus       571 Dg~IrlWDl~s~~~v~~l~~-~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpd  648 (721)
                      ||.|++||++....+..+.. .+...|.+++|+|++ .++++|+.||.|++||+.+++.  +..+.+|.+.+ +++|+|+
T Consensus       247 d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~g~~dg~i~iwd~~~~~~--~~~~~~H~~~V~~l~~s~d  323 (340)
T d1tbga_         247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG-RLLLAGYDDFNCNVWDALKADR--AGVLAGHDNRVSCLGVTDD  323 (340)
T ss_dssp             TSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSS-CEEEEEETTSCEEEEETTTCCE--EEEECCCSSCEEEEEECTT
T ss_pred             CCeEEEEeecccccccccccccccCceEEEEECCCC-CEEEEEECCCEEEEEECCCCcE--EEEEcCCCCCEEEEEEeCC
Confidence            99999999999988877642 367789999999999 7999999999999999998854  66778888877 8999999


Q ss_pred             CCEEEEEeCCCcEEEEE
Q 004969          649 DHYLLGKGSGTSMFVQS  665 (721)
Q Consensus       649 g~~Lasgs~Dg~I~VWD  665 (721)
                      +.+|++|+.||.|+|||
T Consensus       324 ~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         324 GMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SSCEEEEETTSCEEEEC
T ss_pred             CCEEEEEccCCEEEEeC
Confidence            99999999999999997

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=1.2e-22  Score=213.33  Aligned_cols=237  Identities=14%  Similarity=0.133  Sum_probs=176.6

Q ss_pred             CeEEEEEeCCCCCEEEEEECCC-eEEEEECCCCe--EEEEeecCCC-CCCeEEEEEeeC-CCCEEEEEeCCCeEEEEEcC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDG-EIVVVNHENEN--IVSYIPSFGA-MNSVLGLCWLKK-YPSKLIAGSDNGSLKLYDIR  529 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG-~I~IWdl~tg~--~i~~l~~~~H-~~~V~sl~fsp~-d~~~LaSgs~DGtVrIWDi~  529 (721)
                      .+++++|+| +++.++.++.++ .|+.|+.....  .+..+.  +| ...|++++|+|. ++.+|++|+.||+|+|||+.
T Consensus        19 ~~t~l~~~~-~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~--gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~   95 (325)
T d1pgua1          19 FTTHLSYDP-TTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFT--GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWT   95 (325)
T ss_dssp             CCCCCEEET-TTTEEEEEETTEEEEEECCSSCCSSCSEEEEC--TTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEE
T ss_pred             CeEEEEECC-CCCEEEEEeCCCEEEEEEeCCCCCccceEEEe--CCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeec
Confidence            478899999 889998887654 35667654433  344444  66 468999999963 56899999999999999998


Q ss_pred             CCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC--CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCc
Q 004969          530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY--SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPS  607 (721)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~--Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~  607 (721)
                      .+..... ...........+..+|.+++|++++..+++++.  ++.+++|+..+++.+..+.+ |...|.+++|+|+++.
T Consensus        96 ~~~~~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~  173 (325)
T d1pgua1          96 FDKESNS-VEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSG-HSQRINACHLKQSRPM  173 (325)
T ss_dssp             EEGGGTE-EEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCS-CSSCEEEEEECSSSSC
T ss_pred             CCcceee-eecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeee-cccccccccccccccc
Confidence            7543211 111111222346678999999999999988874  67899999999999999987 9999999999999977


Q ss_pred             EEEEEECCCcEEEEECCCCCceeEE-EecCCCCeE-EEEEecC-CCEEEEEeCCCcEEEEEcC-CCc---ccccccCeEE
Q 004969          608 IFATSSFDQDVKLWDLRQKPIQPCY-TASSSKGNV-MVCFSPD-DHYLLGKGSGTSMFVQSLR-GDP---FRDFNMSILA  680 (721)
Q Consensus       608 lLaSgs~DgtIrIWDlrs~~~~~~~-~~~~~~~~v-sl~fSpd-g~~Lasgs~Dg~I~VWDl~-g~~---l~~~~~~V~~  680 (721)
                      ++++++.|+.|++||.+..+..... ....+...+ +++|+|+ +.++++++.|+.|++||++ +..   +..|...+..
T Consensus       174 ~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~  253 (325)
T d1pgua1         174 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQG  253 (325)
T ss_dssp             EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCS
T ss_pred             eEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccccccccccccc
Confidence            7899999999999999876433222 234555656 8999996 6899999999999999987 333   3344444433


Q ss_pred             EEEC---CCCCcccccccEEEEecCC
Q 004969          681 AYTR---PSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       681 v~fs---P~~~~~~v~v~lLASgs~~  703 (721)
                      +.|+   |++       ..|++|+..
T Consensus       254 ~~~s~~~~dg-------~~l~s~s~D  272 (325)
T d1pgua1         254 GIFALSWLDS-------QKFATVGAD  272 (325)
T ss_dssp             CEEEEEESSS-------SEEEEEETT
T ss_pred             ceeeeeccCC-------CEEEEEeCC
Confidence            3333   556       678888765

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=6.2e-22  Score=207.91  Aligned_cols=201  Identities=15%  Similarity=0.185  Sum_probs=157.6

Q ss_pred             CeEEEEEeCCCCCEEEEEEC--CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTL--DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP  532 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~--DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~  532 (721)
                      .|.+++|+| ++.++++++.  ++.+++|+..+++.+..+.  +|...|++++|+|..+..+++++.||.|++||....+
T Consensus       117 ~v~~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  193 (325)
T d1pgua1         117 PISDISWDF-EGRRLCVVGEGRDNFGVFISWDSGNSLGEVS--GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK  193 (325)
T ss_dssp             CEEEEEECT-TSSEEEEEECCSSCSEEEEETTTCCEEEECC--SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE
T ss_pred             cEEEEEECC-CCCccceeeccccceEEEEeecccccceeee--ecccccccccccccccceEEEeecccccccccccccc
Confidence            589999999 8888887764  6789999999999988887  8999999999996555678899999999999987744


Q ss_pred             CcccccccCcceeEeccCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEc---CCCCcE
Q 004969          533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSM-DELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFS---NHSPSI  608 (721)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~-~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fs---Pdg~~l  608 (721)
                      ......      ....+...|.+++|+|+ +..+++++.|+.|++||+++++.+..+.+ |...+.++.|+   |+| .+
T Consensus       194 ~~~~~~------~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~-~~~~v~~~~~s~~~~dg-~~  265 (325)
T d1pgua1         194 FSASDR------THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIED-DQEPVQGGIFALSWLDS-QK  265 (325)
T ss_dssp             EEEEEC------SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCB-TTBCCCSCEEEEEESSS-SE
T ss_pred             cceecc------cccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccc-cccccccceeeeeccCC-CE
Confidence            311100      01134466999999996 57788889999999999999999999986 77776555554   567 79


Q ss_pred             EEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEec-CCCEEEEEeCCCcEEEEEc
Q 004969          609 FATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSP-DDHYLLGKGSGTSMFVQSL  666 (721)
Q Consensus       609 LaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSp-dg~~Lasgs~Dg~I~VWDl  666 (721)
                      |++++.|++|+|||+++++....+....+.... .+++.+ .+.+|++++.||.|++||+
T Consensus       266 l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         266 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             EEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            999999999999999998765555555444322 333433 2347889999999999996

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=3.5e-22  Score=215.07  Aligned_cols=187  Identities=14%  Similarity=0.168  Sum_probs=134.4

Q ss_pred             CCeEEEEEeeCC----CCEEEEEeCCCeEEEEEcCCCCCcccccccCc-ce--------eEeccCCCeEEEEEecCCCEE
Q 004969          499 NSVLGLCWLKKY----PSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGA-GT--------VTFDEFDQLTSVHVNSMDELF  565 (721)
Q Consensus       499 ~~V~sl~fsp~d----~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~-~~--------~~~~~~~~V~sv~~sp~~~~l  565 (721)
                      ..+..++|.+..    +.++++++.||++++|++.............. ..        ....+...+.+++|+|++ .+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~l  198 (393)
T d1sq9a_         120 HSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LI  198 (393)
T ss_dssp             SCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EE
T ss_pred             CceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EE
Confidence            345566665322    35789999999999999865433111111000 00        011223458899998875 88


Q ss_pred             EEEeCCCcEEEEECCCCcEEEEEcc-----ccCCCeEEEEEcCCCCcEEEEEECCCc---EEEEECCCCCceeEEE----
Q 004969          566 LASGYSKNIALYDINSGRRLQVFAD-----MHKEHINVVKFSNHSPSIFATSSFDQD---VKLWDLRQKPIQPCYT----  633 (721)
Q Consensus       566 ls~g~Dg~IrlWDl~s~~~v~~l~~-----~h~~~V~sI~fsPdg~~lLaSgs~Dgt---IrIWDlrs~~~~~~~~----  633 (721)
                      ++|+.|++|++||+.+++++..+..     +|..+|++++|+|+| .+|++|+.|++   |++||++++.......    
T Consensus       199 asgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg-~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~  277 (393)
T d1sq9a_         199 ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTH  277 (393)
T ss_dssp             EEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--
T ss_pred             EEEeCCCcEEEEeecccccccccccccccccccceEEEccccccc-ceeeeecCCCCcceeeecccccceeeeeeccccc
Confidence            8999999999999999998876542     388999999999999 89999999975   9999999876543321    


Q ss_pred             -------ecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcC-CCc---ccccccCeE----EEEECCCC
Q 004969          634 -------ASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLR-GDP---FRDFNMSIL----AAYTRPSS  687 (721)
Q Consensus       634 -------~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~-g~~---l~~~~~~V~----~v~fsP~~  687 (721)
                             +.+|...| +++|+|+|++|++|+.|++|++||++ |..   +++|...|.    .++|+|++
T Consensus       278 ~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~  347 (393)
T d1sq9a_         278 SSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHG  347 (393)
T ss_dssp             ------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTS
T ss_pred             cccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCC
Confidence                   23677777 89999999999999999999999998 332   444544333    35566665

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=5.2e-22  Score=202.45  Aligned_cols=223  Identities=12%  Similarity=0.126  Sum_probs=166.8

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|++++|+|     |++|+.||+|++||+.++.       .+|...|.+++|+  .+..+++++.|++|++|++...+..
T Consensus        15 ~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~~-------~~h~~~V~~~~~~--~~~~~~s~s~D~~v~~w~~~~~~~~   80 (287)
T d1pgua2          15 GITALTVNP-----LISGSYDGRIMEWSSSSMH-------QDHSNLIVSLDNS--KAQEYSSISWDDTLKVNGITKHEFG   80 (287)
T ss_dssp             CEEEEETTT-----TEEEETTSCEEETTTTEEE-------CCCCSCEEEEECC--STTCCEEEETTTEEEETTEEEEECS
T ss_pred             ceEEEEECc-----EEEEeCCCeEEEEECCCCC-------CCCCCCEEEEEec--CCCeEEEEeeccccccccccccccc
Confidence            599999988     9999999999999987542       2899999999986  3467899999999999998653210


Q ss_pred             c--cc-----------ccc-----------CcceeEeccCCCeEEEEEecCCCEEEEEeCC-CcEEEEECCCCcEEEEEc
Q 004969          535 I--RG-----------MHY-----------GAGTVTFDEFDQLTSVHVNSMDELFLASGYS-KNIALYDINSGRRLQVFA  589 (721)
Q Consensus       535 ~--~~-----------~~~-----------~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D-g~IrlWDl~s~~~v~~l~  589 (721)
                      .  ..           ...           ......+....+  ..++++++..+++++.+ +.+++|++...+....+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~  158 (287)
T d1pgua2          81 SQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSP--GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLK  158 (287)
T ss_dssp             SCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSC--EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECS
T ss_pred             cceeeeeeccCCceEEEeecccceeeeccceeeeeeccccce--eeeeeccCcceeeeccccceeeeeeccccceeeeee
Confidence            0  00           000           001111122222  34556788888888876 579999998777777766


Q ss_pred             cccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecC----------CCEEEEEeCC
Q 004969          590 DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPD----------DHYLLGKGSG  658 (721)
Q Consensus       590 ~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpd----------g~~Lasgs~D  658 (721)
                      ..|...+++++|+|++ .+|++|+.||.|++||+.++... .....+|...+ +++|+|.          +.++++|+.|
T Consensus       159 ~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~i~d~~~~~~~-~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D  236 (287)
T d1pgua2         159 TPLRAKPSYISISPSE-TYIAAGDVMGKILLYDLQSREVK-TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLD  236 (287)
T ss_dssp             SCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEE-ECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETT
T ss_pred             eccCCceeEEEeccCc-cccccccccccccceeecccccc-cccccccccccceeeecccccccccccCCCCeeEeecCC
Confidence            5588899999999999 79999999999999999987432 22345677766 8999874          5689999999


Q ss_pred             CcEEEEEcCC--Cc---ccccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          659 TSMFVQSLRG--DP---FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       659 g~I~VWDl~g--~~---l~~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                      +.|++||++.  ..   +..|...|.++.|+|++       . |+|++..
T Consensus       237 ~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-------~-l~s~g~D  278 (287)
T d1pgua2         237 TNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-------T-LVSSGAD  278 (287)
T ss_dssp             SCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-------E-EEEEETT
T ss_pred             CeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-------E-EEEEECC
Confidence            9999999862  22   34677899999999987       4 5566554

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.86  E-value=1.1e-20  Score=193.38  Aligned_cols=194  Identities=14%  Similarity=0.220  Sum_probs=154.5

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .+.+++|+| ++.++++++ ++.+++|+..  +.....    ....+.+++|+ +++.++++|+.||.|++||++++...
T Consensus       101 ~~~~~~~s~-~g~~~~~~~-~~~i~~~~~~--~~~~~~----~~~~~~~~~~s-~~~~~l~~g~~dg~i~~~d~~~~~~~  171 (299)
T d1nr0a2         101 QPLGLAVSA-DGDIAVAAC-YKHIAIYSHG--KLTEVP----ISYNSSCVALS-NDKQFVAVGGQDSKVHVYKLSGASVS  171 (299)
T ss_dssp             CEEEEEECT-TSSCEEEEE-SSEEEEEETT--EEEEEE----CSSCEEEEEEC-TTSCEEEEEETTSEEEEEEEETTEEE
T ss_pred             ccccccccc-ccccccccc-cccccccccc--cccccc----ccccccccccc-cccccccccccccccccccccccccc
Confidence            588999999 888776665 5689999954  333222    23467889998 78899999999999999999875421


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEE---EEccccCCCeEEEEEcCCCCcEEEE
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQ---VFADMHKEHINVVKFSNHSPSIFAT  611 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~---~l~~~h~~~V~sI~fsPdg~~lLaS  611 (721)
                              ......|...|.+++|+|++..+++++.|+.|++||+.++....   .+.+ |...|++++|+|++ .++++
T Consensus       172 --------~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~s~~~-~~l~s  241 (299)
T d1nr0a2         172 --------EVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTF-HTAKVACVSWSPDN-VRLAT  241 (299)
T ss_dssp             --------EEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCC-CSSCEEEEEECTTS-SEEEE
T ss_pred             --------ccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccc-cceEE
Confidence                    12344567889999999999999999999999999999876553   3344 89999999999999 79999


Q ss_pred             EECCCcEEEEECCCCCceeEEEecCC-CCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          612 SSFDQDVKLWDLRQKPIQPCYTASSS-KGNVMVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       612 gs~DgtIrIWDlrs~~~~~~~~~~~~-~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                      |+.||.|++||++++..........+ ...+...+++++.+|++|+.|+.|++||+.
T Consensus       242 gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         242 GSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             EETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred             EcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEeCCCEEEEEecc
Confidence            99999999999998765555544443 445655566778899999999999999984

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.84  E-value=6.3e-20  Score=190.89  Aligned_cols=188  Identities=12%  Similarity=0.118  Sum_probs=148.5

Q ss_pred             EEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCC--eEEEEEcCCCCCcc
Q 004969          458 QFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG--SLKLYDIRHMPPSI  535 (721)
Q Consensus       458 ~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DG--tVrIWDi~~~~~~~  535 (721)
                      .-.|||.||+++|+++ +|.|++||+.++..++.    +|...|.+++|+ +++++|++++.+.  .|++||.++++.  
T Consensus         7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~----~~~~~v~~~~~s-pDg~~l~~~~~~~g~~v~v~d~~~~~~--   78 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV----PEPLRIRYVRRG-GDTKVAFIHGTREGDFLGIYDYRTGKA--   78 (360)
T ss_dssp             EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC----SCCSCEEEEEEC-SSSEEEEEEEETTEEEEEEEETTTCCE--
T ss_pred             cccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc----cCCCCEEEEEEC-CCCCEEEEEEcCCCCEEEEEECCCCcE--
Confidence            4569998899999887 57999999998876642    688999999999 6888888776553  799999988653  


Q ss_pred             cccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE--
Q 004969          536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS--  613 (721)
Q Consensus       536 ~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs--  613 (721)
                              .....+...|.+++|+|++.++++++.++.+++|++.+++....+.. |...+.+++|+|+| .+|+.++  
T Consensus        79 --------~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~spdg-~~la~~~~~  148 (360)
T d1k32a3          79 --------EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS-REAMITDFTISDNS-RFIAYGFPL  148 (360)
T ss_dssp             --------EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-SSSCCCCEEECTTS-CEEEEEEEE
T ss_pred             --------EEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeec-ccccccchhhccce-eeeeeeccc
Confidence                    22234567799999999999999999999999999999999888886 88999999999999 6776543  


Q ss_pred             --------CCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 004969          614 --------FDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQS  665 (721)
Q Consensus       614 --------~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWD  665 (721)
                              .++.+++||+.+++.  ............++|+|+|++|++++.++.+.+|+
T Consensus       149 ~~~~~~~~~~~~~~v~d~~~~~~--~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d  206 (360)
T d1k32a3         149 KHGETDGYVMQAIHVYDMEGRKI--FAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPD  206 (360)
T ss_dssp             CSSTTCSCCEEEEEEEETTTTEE--EECSCSSSBEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred             cccceeeccccceeeeccccCce--eeecccccccccccccCCCCEEEEEeCCCceEccc
Confidence                    345699999998743  22223333344789999999999666666665554

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=9.2e-20  Score=195.86  Aligned_cols=194  Identities=13%  Similarity=0.253  Sum_probs=146.7

Q ss_pred             CeEEEEEeCC----CCCEEEEEECCCeEEEEECCCCe---------------EEEEe-ecCCCCCCeEEEEEeeCCCCEE
Q 004969          455 RPRQFEYHPS----ISCLMVFGTLDGEIVVVNHENEN---------------IVSYI-PSFGAMNSVLGLCWLKKYPSKL  514 (721)
Q Consensus       455 ~V~~lafsP~----dg~~LasGs~DG~I~IWdl~tg~---------------~i~~l-~~~~H~~~V~sl~fsp~d~~~L  514 (721)
                      .+..++|.+.    .+.++++++.||+|++|++....               ..... ....+...+++++|+ +++ +|
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s-~dg-~l  198 (393)
T d1sq9a_         121 SFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS-ERG-LI  198 (393)
T ss_dssp             CEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEEC-TTS-EE
T ss_pred             ceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEEC-CCC-EE
Confidence            4667778773    24689999999999999974210               11111 113455678999998 454 89


Q ss_pred             EEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCc---EEEEECCCCcEEEEEc--
Q 004969          515 IAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKN---IALYDINSGRRLQVFA--  589 (721)
Q Consensus       515 aSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~---IrlWDl~s~~~v~~l~--  589 (721)
                      ++|+.||+|++||+.+++..... ..  ......|..+|.+++|+|++..+++++.|++   |++||+++++.+..+.  
T Consensus       199 asgs~Dg~i~iwd~~~~~~~~~~-~~--~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~  275 (393)
T d1sq9a_         199 ATGFNNGTVQISELSTLRPLYNF-ES--QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVP  275 (393)
T ss_dssp             EEECTTSEEEEEETTTTEEEEEE-EC--CC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC
T ss_pred             EEEeCCCcEEEEeeccccccccc-cc--ccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccc
Confidence            99999999999999986542111 10  0112346778999999999999999998864   9999999999888774  


Q ss_pred             ----------cccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-----EEEEecCCCEEEE
Q 004969          590 ----------DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-----MVCFSPDDHYLLG  654 (721)
Q Consensus       590 ----------~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-----sl~fSpdg~~Las  654 (721)
                                .+|...|++++|+|++ ++|+||+.|++|++||++++++  +.++.+|...+     .++|+|+|..+++
T Consensus       276 ~~~~~~~~~~~gH~~~V~~l~fspd~-~~l~S~s~D~~v~vWd~~~g~~--~~~l~gH~~~v~~~~~~~~~~~~~~~~~~  352 (393)
T d1sq9a_         276 THSSQASLGEFAHSSWVMSLSFNDSG-ETLCSAGWDGKLRFWDVKTKER--ITTLNMHCDDIEIEEDILAVDEHGDSLAE  352 (393)
T ss_dssp             --------CCBSBSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEE--EEEEECCGGGCSSGGGCCCBCTTSCBCSS
T ss_pred             cccccceeeeecccCceeeeccCCCC-CeeEEECCCCEEEEEECCCCCE--EEEECCcCCcccCCccEEEECCCCCEEEE
Confidence                      1399999999999999 8999999999999999999854  66667777655     4788898888765


Q ss_pred             Ee
Q 004969          655 KG  656 (721)
Q Consensus       655 gs  656 (721)
                      ++
T Consensus       353 ~~  354 (393)
T d1sq9a_         353 PG  354 (393)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1e-18  Score=178.50  Aligned_cols=184  Identities=20%  Similarity=0.294  Sum_probs=147.8

Q ss_pred             CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcce
Q 004969          465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGT  544 (721)
Q Consensus       465 dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~  544 (721)
                      ....+++++.||.|++||...+..+..+.  +|...+..+.+   ++..+++|+.||+|++||++.++.. .        
T Consensus       146 ~~~~~~~~~~d~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~---~~~~l~s~~~dg~i~~~d~~~~~~~-~--------  211 (342)
T d2ovrb2         146 DGRRVVSGAYDFMVKVWDPETETCLHTLQ--GHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCI-H--------  211 (342)
T ss_dssp             CSSCEEEEETTSCEEEEEGGGTEEEEEEC--CCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEE-E--------
T ss_pred             ccceeeeecCCCeEEEeecccceeeEEEc--CcccccccccC---CCCEEEEEeCCCeEEEeecccceee-e--------
Confidence            56789999999999999999998888877  77777776654   5789999999999999999886541 1        


Q ss_pred             eEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcc--ccCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 004969          545 VTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD--MHKEHINVVKFSNHSPSIFATSSFDQDVKLWD  622 (721)
Q Consensus       545 ~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~--~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWD  622 (721)
                      ....|...+.++++  +++.+++++.|+.|++||+...+....+..  .|...+.++.+++   .++++|+.||+|++||
T Consensus       212 ~~~~~~~~v~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~s~Dg~i~iwd  286 (342)
T d2ovrb2         212 TLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWD  286 (342)
T ss_dssp             EECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEE
T ss_pred             EecccccceeEEec--CCCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccCC---CeeEEEcCCCEEEEEE
Confidence            12234455777776  457999999999999999999988888764  2566777777764   5899999999999999


Q ss_pred             CCCCCceeEEEe---cCCCCeE-EEEEecCCCEEEEEeCCCc----EEEEEcC
Q 004969          623 LRQKPIQPCYTA---SSSKGNV-MVCFSPDDHYLLGKGSGTS----MFVQSLR  667 (721)
Q Consensus       623 lrs~~~~~~~~~---~~~~~~v-sl~fSpdg~~Lasgs~Dg~----I~VWDl~  667 (721)
                      +++++....+..   .+|...+ +++|+|++.++++|+.||+    |++||+.
T Consensus       287 ~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         287 LKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             TTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             CCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence            999876444332   2455566 8999999999999999985    9999986

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=3.5e-18  Score=173.65  Aligned_cols=194  Identities=12%  Similarity=0.204  Sum_probs=149.0

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC-CeEEEEEcCCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN-GSLKLYDIRHMPP  533 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D-GtVrIWDi~~~~~  533 (721)
                      .+.++.+++ ++..+++ +.++.+.+|+..++..+..+..   ...+.++  + ++++.+++++.| +.|++|++.....
T Consensus        82 ~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~-~~~~~~~v~~~~~~~v~~~~~~~~~~  153 (287)
T d1pgua2          82 QPKVASANN-DGFTAVL-TNDDDLLILQSFTGDIIKSVRL---NSPGSAV--S-LSQNYVAVGLEEGNTIQVFKLSDLEV  153 (287)
T ss_dssp             CEEEEEECS-SSEEEEE-ETTSEEEEEETTTCCEEEEEEC---SSCEEEE--E-ECSSEEEEEETTTSCEEEEETTEEEE
T ss_pred             ceeeeeecc-CCceEEE-eecccceeeeccceeeeeeccc---cceeeee--e-ccCcceeeeccccceeeeeeccccce
Confidence            477888888 6666655 4566799999999998888763   2344444  4 355666666665 5799999876332


Q ss_pred             cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCC--------
Q 004969          534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHS--------  605 (721)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg--------  605 (721)
                      ..        .....+..++++++|+|++.++++++.||.|++||+.+++........|...|.+++|+|.+        
T Consensus       154 ~~--------~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~  225 (287)
T d1pgua2         154 SF--------DLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEI  225 (287)
T ss_dssp             EE--------ECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CC
T ss_pred             ee--------eeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccC
Confidence            11        11123446799999999999999999999999999999887765444599999999999854        


Q ss_pred             -CcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEc
Q 004969          606 -PSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSL  666 (721)
Q Consensus       606 -~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl  666 (721)
                       ..++++|+.|++|++||++++. .......+|...+ +++|+|++ .|++++.|+.|++|++
T Consensus       226 ~~~~l~sgs~D~~i~iw~~~~~~-~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         226 EEDLVATGSLDTNIFIYSVKRPM-KIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             SCCEEEEEETTSCEEEEESSCTT-CCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             CCCeeEeecCCCeEEEEECCCCC-eEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence             2589999999999999998743 3355667788777 89999986 5888999999999996

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.3e-17  Score=166.24  Aligned_cols=187  Identities=16%  Similarity=0.302  Sum_probs=138.9

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeec----------------------------------------
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPS----------------------------------------  494 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~----------------------------------------  494 (721)
                      .|++++|++   ++|++|+.||.|++|++..+........                                        
T Consensus        57 ~V~~v~~~~---~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (293)
T d1p22a2          57 SVLCLQYDE---RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRV  133 (293)
T ss_dssp             CEEEEECCS---SEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEE
T ss_pred             CEeeeeccc---ceeecccccccccccccccccccccccccccccccccccccceeecccccceeEeecccccccccccc
Confidence            588888754   8999999999999999876554332221                                        


Q ss_pred             -CCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEe-ccCCCeEEEEEecCCCEEEEEeCCC
Q 004969          495 -FGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSK  572 (721)
Q Consensus       495 -~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~-~~~~~V~sv~~sp~~~~lls~g~Dg  572 (721)
                       ..|...|..+.+.   ...+++++.|+.|++||+++++..          ..+ .+...+..+.+  ++..+++++.||
T Consensus       134 ~~~~~~~v~~~~~~---~~~~~~~s~d~~i~~~d~~~~~~~----------~~~~~~~~~v~~~~~--~~~~l~~~~~dg  198 (293)
T d1p22a2         134 LVGHRAAVNVVDFD---DKYIVSASGDRTIKVWNTSTCEFV----------RTLNGHKRGIACLQY--RDRLVVSGSSDN  198 (293)
T ss_dssp             ECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTTCCEE----------EEEECCSSCEEEEEE--ETTEEEEEETTS
T ss_pred             ccccccccccceec---ccccccccCCCceeeecCCCCcEE----------EEEcccccccccccC--CCCeEEEecCCC
Confidence             1444555555543   456777888888888888775431          111 23344666666  467899999999


Q ss_pred             cEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCC-------ceeEEEecCCCCeE-EEE
Q 004969          573 NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKP-------IQPCYTASSSKGNV-MVC  644 (721)
Q Consensus       573 ~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~-------~~~~~~~~~~~~~v-sl~  644 (721)
                      .|++||+++++.+..+.+ |...+...  .+++ ..+++|+.||.|++||+++..       ...+..+.+|.+.+ +++
T Consensus       199 ~i~i~d~~~~~~~~~~~~-~~~~v~~~--~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~  274 (293)
T d1p22a2         199 TIRLWDIECGACLRVLEG-HEELVRCI--RFDN-KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ  274 (293)
T ss_dssp             CEEEEETTTCCEEEEECC-CSSCEEEE--ECCS-SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEE
T ss_pred             EEEEEecccceeeeeecc-cceeeeec--cccc-eEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEE
Confidence            999999999999999886 88887754  4555 789999999999999975421       23356677888777 788


Q ss_pred             EecCCCEEEEEeCCCcEEEEE
Q 004969          645 FSPDDHYLLGKGSGTSMFVQS  665 (721)
Q Consensus       645 fSpdg~~Lasgs~Dg~I~VWD  665 (721)
                      |  ++.+|++|+.||+|++||
T Consensus       275 ~--d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         275 F--DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             E--CSSCEEECCSSSEEEEEC
T ss_pred             E--cCCEEEEEecCCEEEEeC
Confidence            7  567899999999999997

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=8.6e-18  Score=172.44  Aligned_cols=184  Identities=12%  Similarity=0.234  Sum_probs=143.5

Q ss_pred             EeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCccccccc
Q 004969          461 YHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHY  540 (721)
Q Consensus       461 fsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~  540 (721)
                      +.+ ++++++++..|+.|++||+.+++.+....  ++...+.++.|+ +.+..+++++.||+|++||+.++... .    
T Consensus       167 ~~~-~~~~~~~~~~d~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~d~~i~i~d~~~~~~~-~----  237 (355)
T d1nexb2         167 VSG-HGNIVVSGSYDNTLIVWDVAQMKCLYILS--GHTDRIYSTIYD-HERKRCISASMDTTIRIWDLENGELM-Y----  237 (355)
T ss_dssp             EEE-ETTEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEEE-TTTTEEEEEETTSCEEEEETTTCCEE-E----
T ss_pred             ccc-ccceeeeecccceeeeeecccccceeeee--cccccccccccc-ccceeeecccccceEEeeeccccccc-c----
Confidence            444 66999999999999999999999888776  777889999998 78899999999999999999986542 1    


Q ss_pred             CcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEE-EEcCCCCcEEEEEECCCcEE
Q 004969          541 GAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVV-KFSNHSPSIFATSSFDQDVK  619 (721)
Q Consensus       541 ~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI-~fsPdg~~lLaSgs~DgtIr  619 (721)
                          ....|...|.+++++  ++.+++++.||.|++||++++......   |...+.++ .+++++ .++++| .|++|+
T Consensus       238 ----~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~-~~l~~g-~d~~i~  306 (355)
T d1nexb2         238 ----TLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY---HHTNLSAITTFYVSD-NILVSG-SENQFN  306 (355)
T ss_dssp             ----EECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEEE---ECTTCCCCCEEEECS-SEEEEE-ETTEEE
T ss_pred             ----ccccccccccccccc--cceeeeeecccccccccccccceeccc---ccCCceEEEEEcCCC-CEEEEE-eCCEEE
Confidence                112355678899884  578999999999999999988765444   55555555 456665 666665 589999


Q ss_pred             EEECCCCCceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEc
Q 004969          620 LWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSL  666 (721)
Q Consensus       620 IWDlrs~~~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl  666 (721)
                      +||+++++.... .+.+|...+ +++|+|+ ..+++++.||.++||.+
T Consensus       307 vwd~~tg~~~~~-~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         307 IYNLRSGKLVHA-NILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             EEETTTCCBCCS-CTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred             EEECCCCCEEEE-EecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence            999999865322 345677776 8999986 47788899998766543

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=5.7e-18  Score=172.15  Aligned_cols=220  Identities=16%  Similarity=0.126  Sum_probs=152.3

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .|++++|+|.++.++++|+.||+|++|+...+........ .+........+ +.+...+++++.|+++++||++.....
T Consensus        58 ~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~wd~~~~~~~  135 (342)
T d1yfqa_          58 PLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTN-NEANLGICRIC-KYGDDKLIAASWDGLIEVIDPRNYGDG  135 (342)
T ss_dssp             CEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBS-CCCCSCEEEEE-EETTTEEEEEETTSEEEEECHHHHTTB
T ss_pred             CEEEEEEeCCCCCEEEEcccccceeeeecccccccccccc-ccccccccccc-ccccccccccccccccceeeccccccc
Confidence            5999999996677999999999999999998877766653 22233333333 367788999999999999987543221


Q ss_pred             cccc------------------cc--------Cccee----------------EeccCCCeEEEEEec-CCCEEEEEeCC
Q 004969          535 IRGM------------------HY--------GAGTV----------------TFDEFDQLTSVHVNS-MDELFLASGYS  571 (721)
Q Consensus       535 ~~~~------------------~~--------~~~~~----------------~~~~~~~V~sv~~sp-~~~~lls~g~D  571 (721)
                      ....                  ..        ..+.+                .......+.+..+.+ ++..+++++.|
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  215 (342)
T d1yfqa_         136 VIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSID  215 (342)
T ss_dssp             CEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETT
T ss_pred             eeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCC
Confidence            0000                  00        00000                001112344444443 45678888899


Q ss_pred             CcEEEEECCCCcEE------EEEc--------cccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCC
Q 004969          572 KNIALYDINSGRRL------QVFA--------DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSS  637 (721)
Q Consensus       572 g~IrlWDl~s~~~v------~~l~--------~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~  637 (721)
                      |.+.+|+.......      ..+.        ..|...|++++|+|++ .+|+||+.||+|++||+++++.  +..+..+
T Consensus       216 g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~-~~lasg~~Dg~v~vWD~~~~~~--l~~~~~~  292 (342)
T d1yfqa_         216 GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNLQTRKK--IKNFAKF  292 (342)
T ss_dssp             SEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT-CCEEEEETTSCEEEEETTTTEE--EEECCCC
T ss_pred             CeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCc-cEEEEECCCCEEEEEECCCCcE--EEEecCC
Confidence            99999998743211      1110        1366789999999999 7999999999999999998743  5566555


Q ss_pred             CCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccccccCeE
Q 004969          638 KGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDFNMSIL  679 (721)
Q Consensus       638 ~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~~~~~~V~  679 (721)
                      .....++|+|+|+++++++.|+.+++|......+..+...|.
T Consensus       293 ~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~~~~~~~~~~~i~  334 (342)
T d1yfqa_         293 NEDSVVKIACSDNILCLATSDDTFKTNAAIDQTIELNASSIY  334 (342)
T ss_dssp             SSSEEEEEEECSSEEEEEEECTHHHHCSSSCTTSCCCCCEEE
T ss_pred             CCCEEEEEEeCCCEEEEEEcCCcEEEeeeeCCCccCCCCeEE
Confidence            555578999999999999999999999876666655555554

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.73  E-value=6.8e-17  Score=167.59  Aligned_cols=222  Identities=9%  Similarity=0.070  Sum_probs=164.0

Q ss_pred             CeEEEEEeCCCCCEEEEEECCC--eEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDG--EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP  532 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG--~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~  532 (721)
                      +|++++|+| |+++|++++.+.  .|++||.++++... +.  +|...|.+++|+ +++++|++++.++.+++|++.+++
T Consensus        44 ~v~~~~~sp-Dg~~l~~~~~~~g~~v~v~d~~~~~~~~-~~--~~~~~v~~~~~s-pdg~~l~~~~~~~~~~~~~~~~~~  118 (360)
T d1k32a3          44 RIRYVRRGG-DTKVAFIHGTREGDFLGIYDYRTGKAEK-FE--ENLGNVFAMGVD-RNGKFAVVANDRFEIMTVDLETGK  118 (360)
T ss_dssp             CEEEEEECS-SSEEEEEEEETTEEEEEEEETTTCCEEE-CC--CCCCSEEEEEEC-TTSSEEEEEETTSEEEEEETTTCC
T ss_pred             CEEEEEECC-CCCEEEEEEcCCCCEEEEEECCCCcEEE-ee--CCCceEEeeeec-ccccccceeccccccccccccccc
Confidence            699999999 998888766543  79999999887654 33  788999999998 799999999999999999998865


Q ss_pred             CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe----------CCCcEEEEECCCCcEEEEEccccCCCeEEEEEc
Q 004969          533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG----------YSKNIALYDINSGRRLQVFADMHKEHINVVKFS  602 (721)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g----------~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fs  602 (721)
                      ..         .....+...+.+++|+|++..++.++          .++.+++||+.+++......  +...+..++|+
T Consensus       119 ~~---------~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~--~~~~~~~~~~s  187 (360)
T d1k32a3         119 PT---------VIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT--ENSHDYAPAFD  187 (360)
T ss_dssp             EE---------EEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSC--SSSBEEEEEEC
T ss_pred             ee---------eeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecc--ccccccccccc
Confidence            41         22223445688999999999998764          24569999999887665544  77888999999


Q ss_pred             CCCCcEEEEEECCCcEEEEECCCCCce-----eEEE------------------------------------ecCCCCeE
Q 004969          603 NHSPSIFATSSFDQDVKLWDLRQKPIQ-----PCYT------------------------------------ASSSKGNV  641 (721)
Q Consensus       603 Pdg~~lLaSgs~DgtIrIWDlrs~~~~-----~~~~------------------------------------~~~~~~~v  641 (721)
                      |+| +.|++++.|+.+++||.......     ....                                    +....+..
T Consensus       188 pdg-~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (360)
T d1k32a3         188 ADS-KNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDY  266 (360)
T ss_dssp             TTS-CEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCE
T ss_pred             CCC-CEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCce
Confidence            999 79999999999999997542110     0000                                    00001111


Q ss_pred             -EEEEecCCC-------------EEEEEeCCCcEEEEEcCCCcccccccCeEEEEECCCCCccccc
Q 004969          642 -MVCFSPDDH-------------YLLGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVK  693 (721)
Q Consensus       642 -sl~fSpdg~-------------~Lasgs~Dg~I~VWDl~g~~l~~~~~~V~~v~fsP~~~~~~v~  693 (721)
                       .+...+++.             ++++++.++.+++||+.+.....+...|..++|+|+++..+..
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~v~~~~~SpDG~~l~~~  332 (360)
T d1k32a3         267 RMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVR  332 (360)
T ss_dssp             EEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEEEEEEEEECTTSCEEEEE
T ss_pred             eEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEecCCcCEEEECCCCCEEEEE
Confidence             223332222             3345566788999999977777777889999999999776654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.69  E-value=1.3e-14  Score=146.23  Aligned_cols=223  Identities=8%  Similarity=0.091  Sum_probs=167.2

Q ss_pred             CeEEEEEeCCCCCEE-EEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCC-EEEEEeCCCeEEEEEcCCCC
Q 004969          455 RPRQFEYHPSISCLM-VFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPS-KLIAGSDNGSLKLYDIRHMP  532 (721)
Q Consensus       455 ~V~~lafsP~dg~~L-asGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~-~LaSgs~DGtVrIWDi~~~~  532 (721)
                      .+..++|+| +|+++ ++++.++.|++||+.+++.+..+.  .| ..+..+.|+ +++. .++++..++.+.+|+..+++
T Consensus        33 ~p~~va~sp-dG~~l~v~~~~~~~i~v~d~~t~~~~~~~~--~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  107 (301)
T d1l0qa2          33 NPMGAVISP-DGTKVYVANAHSNDVSIIDTATNNVIATVP--AG-SSPQGVAVS-PDGKQVYVTNMASSTLSVIDTTSNT  107 (301)
T ss_dssp             SEEEEEECT-TSSEEEEEEGGGTEEEEEETTTTEEEEEEE--CS-SSEEEEEEC-TTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             CceEEEEeC-CCCEEEEEECCCCEEEEEECCCCceeeeee--cc-ccccccccc-cccccccccccccceeeecccccce
Confidence            478899999 88876 567789999999999999998887  33 357889998 4555 55667788899999998854


Q ss_pred             CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEE
Q 004969          533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFAT  611 (721)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaS  611 (721)
                      .          .....+......+.++|++..+++++ .++.+.+|+..+++.+..+.  +...+..+.++|++. .+++
T Consensus       108 ~----------~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~  174 (301)
T d1l0qa2         108 V----------AGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS--VGRSPKGIAVTPDGT-KVYV  174 (301)
T ss_dssp             E----------EEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CCSSEEEEEECTTSS-EEEE
T ss_pred             e----------eeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecc--cCCCceEEEeecccc-ceee
Confidence            3          33344556678899999999887766 47889999999999998887  556788999999994 5555


Q ss_pred             EE-CCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeC---CCcEEEEEcCCCc-ccc--cccCeEEEEEC
Q 004969          612 SS-FDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGS---GTSMFVQSLRGDP-FRD--FNMSILAAYTR  684 (721)
Q Consensus       612 gs-~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~---Dg~I~VWDl~g~~-l~~--~~~~V~~v~fs  684 (721)
                      ++ .++.+.+|+......  ......+..+..++|++++..++.++.   ++.|++||+.... ...  ....+..++|+
T Consensus       175 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~va~s  252 (301)
T d1l0qa2         175 ANFDSMSISVIDTVTNSV--IDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVT  252 (301)
T ss_dssp             EETTTTEEEEEETTTTEE--EEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEEC
T ss_pred             ecccccccccccccceee--eecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCCCCEEEEEEe
Confidence            54 456778888877643  334444555668999999998876643   4679999998433 222  24578899999


Q ss_pred             CCCCcccccccEEEEecCC
Q 004969          685 PSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       685 P~~~~~~v~v~lLASgs~~  703 (721)
                      |+++      .++++++..
T Consensus       253 pdg~------~l~va~~~~  265 (301)
T d1l0qa2         253 PDGK------KVYVALSFC  265 (301)
T ss_dssp             TTSS------EEEEEETTT
T ss_pred             CCCC------EEEEEECCC
Confidence            9994      244565544

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.65  E-value=1.3e-14  Score=148.22  Aligned_cols=218  Identities=11%  Similarity=0.054  Sum_probs=155.8

Q ss_pred             CEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEE-EEEeCCCeEEEEEcCCCCCcccccccCccee
Q 004969          467 CLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKL-IAGSDNGSLKLYDIRHMPPSIRGMHYGAGTV  545 (721)
Q Consensus       467 ~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~L-aSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~  545 (721)
                      .++++++.|++|+|||+++++.+..++...+...+.+++|+ ++++++ ++++.++.|.+||+.+++.... ...+....
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~s-pDg~~l~v~~~~~~~v~v~D~~t~~~~~~-~~~~~~~~   79 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVA-PGGRIAYATVNKSESLVKIDLVTGETLGR-IDLSTPEE   79 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEEC-TTSSEEEEEETTTTEEEEEETTTCCEEEE-EECCBTTE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEEC-CCCCEEEEEECCCCeEEEEECCCCcEEEE-EecCCCcc
Confidence            57999999999999999999999999876666778899998 688876 5677899999999998765221 11111111


Q ss_pred             EeccCCCeEEEEEecCCCEEEEEe------------CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969          546 TFDEFDQLTSVHVNSMDELFLASG------------YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS  613 (721)
Q Consensus       546 ~~~~~~~V~sv~~sp~~~~lls~g------------~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs  613 (721)
                         +...+..++++|++..+++++            .++.+.+||..+++....+.  +...+..++|+|+| .++++++
T Consensus        80 ---~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg-~~l~~~~  153 (337)
T d1pbyb_          80 ---RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE--APRQITMLAWARDG-SKLYGLG  153 (337)
T ss_dssp             ---EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE--CCSSCCCEEECTTS-SCEEEES
T ss_pred             ---cccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc--ccCCceEEEEcCCC-CEEEEEc
Confidence               112345789999999988876            35789999999999988887  56678899999999 6777765


Q ss_pred             CCCcEEEEECCCCCceeEEE------------------------------------------------------------
Q 004969          614 FDQDVKLWDLRQKPIQPCYT------------------------------------------------------------  633 (721)
Q Consensus       614 ~DgtIrIWDlrs~~~~~~~~------------------------------------------------------------  633 (721)
                      .  .+.+||..+++......                                                            
T Consensus       154 ~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (337)
T d1pbyb_         154 R--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM  231 (337)
T ss_dssp             S--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE
T ss_pred             C--CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcE
Confidence            4  46778876542211100                                                            


Q ss_pred             ----ecCCCC-eEEEEEecCCCEEEEEeCCCcEEEEEcCCCc-cc--ccccCeEEEEECCCCCcccccccEEEEecCC
Q 004969          634 ----ASSSKG-NVMVCFSPDDHYLLGKGSGTSMFVQSLRGDP-FR--DFNMSILAAYTRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       634 ----~~~~~~-~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~-l~--~~~~~V~~v~fsP~~~~~~v~v~lLASgs~~  703 (721)
                          ...+.. ...+.++|++.+++++  ++.|++||+.... +.  .+...+.+++|+|++       ..|++++..
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG-------~~l~v~~~~  300 (337)
T d1pbyb_         232 AMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDG-------STVWLGGAL  300 (337)
T ss_dssp             EEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTS-------CEEEEESBS
T ss_pred             EEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcCCCCEEEEEECCCC-------CEEEEEeCC
Confidence                001111 1246777888887755  5899999998433 22  234578899999999       666666644

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.64  E-value=7.6e-15  Score=160.49  Aligned_cols=192  Identities=11%  Similarity=0.067  Sum_probs=147.4

Q ss_pred             CEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCccc-ccccCccee
Q 004969          467 CLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIR-GMHYGAGTV  545 (721)
Q Consensus       467 ~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~-~~~~~~~~~  545 (721)
                      -++++.+.||+|.|||..+++++..++  .| ..+..++|+ ++++++++++.||+|++||+.+++.... .+...    
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~--~g-~~~~~v~fS-pDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~----  104 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTVLD--TG-YAVHISRLS-ASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG----  104 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEE--CS-SCEEEEEEC-TTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC----
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEe--CC-CCeeEEEEC-CCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecC----
Confidence            346899999999999999999999997  33 469999998 7999999999999999999988654211 11100    


Q ss_pred             EeccCCCeEEEEEecCCCEEE-EEeCCCcEEEEECCCCcEEEEEcc----------ccCCCeEEEEEcCCCCcEEEEEEC
Q 004969          546 TFDEFDQLTSVHVNSMDELFL-ASGYSKNIALYDINSGRRLQVFAD----------MHKEHINVVKFSNHSPSIFATSSF  614 (721)
Q Consensus       546 ~~~~~~~V~sv~~sp~~~~ll-s~g~Dg~IrlWDl~s~~~v~~l~~----------~h~~~V~sI~fsPdg~~lLaSgs~  614 (721)
                       ..+...+.+..|+|+|.+++ ++..+++|++||..+++.+..+..          .+......+.++|+|+.++++...
T Consensus       105 -~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~  183 (432)
T d1qksa2         105 -SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE  183 (432)
T ss_dssp             -SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             -CCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEcc
Confidence             01222345556778999875 455699999999999999887753          134556788999999767778888


Q ss_pred             CCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCC-CcEEEEEcC
Q 004969          615 DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG-TSMFVQSLR  667 (721)
Q Consensus       615 DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D-g~I~VWDl~  667 (721)
                      ++.|.+||..+.+...+..+........++|+|+|+++++++.+ +.+.++|..
T Consensus       184 ~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~  237 (432)
T d1qksa2         184 TGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTK  237 (432)
T ss_dssp             TTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETT
T ss_pred             CCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecc
Confidence            99999999988765556666655556689999999998877654 467888876

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.64  E-value=5.2e-15  Score=160.48  Aligned_cols=232  Identities=9%  Similarity=0.003  Sum_probs=155.9

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEE--eec-CCCCCCeEEEEEeeCCCCEE-EEEeCCCeEEEEEcCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSY--IPS-FGAMNSVLGLCWLKKYPSKL-IAGSDNGSLKLYDIRH  530 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~--l~~-~~H~~~V~sl~fsp~d~~~L-aSgs~DGtVrIWDi~~  530 (721)
                      .|..++|+| ||+++++++.||+|++||+.+++....  ++. .+|.+.+.+++|+ ++++++ +++..++++++||..+
T Consensus        63 ~~~~vafSP-DGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~s-pDG~~l~v~~~~~~~v~i~d~~~  140 (426)
T d1hzua2          63 AVHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKG-YEDRYTIAGAYWPPQFAIMDGET  140 (426)
T ss_dssp             SEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTT-CTTTEEEEEEEESSEEEEEETTT
T ss_pred             CeeEEEECC-CCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeec-CCCCEEEEeecCCCeEEEEcCCc
Confidence            488999999 999999999999999999998875433  321 2455666677776 677776 5556899999999998


Q ss_pred             CCCccccc--ccCcceeEeccCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCc
Q 004969          531 MPPSIRGM--HYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPS  607 (721)
Q Consensus       531 ~~~~~~~~--~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~  607 (721)
                      +.......  ........+........+..++++..++.... .+.+.+++...+.....-...+...+..+.|+|++..
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  220 (426)
T d1hzua2         141 LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRY  220 (426)
T ss_dssp             CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCE
T ss_pred             cceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcE
Confidence            76421111  11111223334455677778888887777664 4677777777655332221127788999999999954


Q ss_pred             EEEEEECCCcEEEEECCCCCce----------------------------------------------------eEEEec
Q 004969          608 IFATSSFDQDVKLWDLRQKPIQ----------------------------------------------------PCYTAS  635 (721)
Q Consensus       608 lLaSgs~DgtIrIWDlrs~~~~----------------------------------------------------~~~~~~  635 (721)
                      ++++...+..+.+||..+++..                                                    ....+.
T Consensus       221 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~  300 (426)
T d1hzua2         221 FMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ  300 (426)
T ss_dssp             EEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEE
T ss_pred             EEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEe
Confidence            4444455666777776653221                                                    112233


Q ss_pred             CCCCeE-EEEEecCCCEEEE-------EeCCCcEEEEEcC-CCccc------------ccccCeEEEEECCCCC
Q 004969          636 SSKGNV-MVCFSPDDHYLLG-------KGSGTSMFVQSLR-GDPFR------------DFNMSILAAYTRPSSK  688 (721)
Q Consensus       636 ~~~~~v-sl~fSpdg~~Las-------gs~Dg~I~VWDl~-g~~l~------------~~~~~V~~v~fsP~~~  688 (721)
                      +|...+ .++|+|+|++|++       ++.+++|+|||+. ++...            .+...|..++|+|+|+
T Consensus       301 g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk  374 (426)
T d1hzua2         301 GQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGD  374 (426)
T ss_dssp             CSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSS
T ss_pred             cCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCC
Confidence            444444 7899999999995       4557899999987 32211            2244689999999995

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.62  E-value=1.7e-13  Score=137.89  Aligned_cols=202  Identities=13%  Similarity=0.133  Sum_probs=156.8

Q ss_pred             EEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEE-EEEeCCCeEEEEEcCCCCCcccccccCcceeEe
Q 004969          469 MVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKL-IAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTF  547 (721)
Q Consensus       469 LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~L-aSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~  547 (721)
                      .++++.|++|.|||+++++.+..++.   ...+.+++|+ +++++| ++++.++.|++||+.+++.          ...+
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~---g~~p~~va~s-pdG~~l~v~~~~~~~i~v~d~~t~~~----------~~~~   70 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPV---GSNPMGAVIS-PDGTKVYVANAHSNDVSIIDTATNNV----------IATV   70 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEEC---SSSEEEEEEC-TTSSEEEEEEGGGTEEEEEETTTTEE----------EEEE
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEEC---CCCceEEEEe-CCCCEEEEEECCCCEEEEEECCCCce----------eeee
Confidence            45678899999999999999998874   2457899998 688766 5777899999999998553          2233


Q ss_pred             ccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCC
Q 004969          548 DEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQK  626 (721)
Q Consensus       548 ~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~  626 (721)
                      .....+..+.+++++..+++++ .++.+.+||..+++....+.  +...+.++.|+|++..+++++..++.+.+|+..+.
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~  148 (301)
T d1l0qa2          71 PAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK--TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK  148 (301)
T ss_dssp             ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             eccccccccccccccccccccccccceeeecccccceeeeecc--ccccceEEEeecCCCeeeeeeccccceeeeecccc
Confidence            4445578899999999877766 47889999999999988887  56678899999999666677778999999999987


Q ss_pred             CceeEEEecCCCCeEEEEEecCCCEEEEEeCC-CcEEEEEcCCCccc---ccccCeEEEEECCCCC
Q 004969          627 PIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG-TSMFVQSLRGDPFR---DFNMSILAAYTRPSSK  688 (721)
Q Consensus       627 ~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D-g~I~VWDl~g~~l~---~~~~~V~~v~fsP~~~  688 (721)
                      ..  ......+..+..++++|++.++++++.+ +.+.+|+.......   .....+..++++|++.
T Consensus       149 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  212 (301)
T d1l0qa2         149 AV--INTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGT  212 (301)
T ss_dssp             EE--EEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSS
T ss_pred             ce--eeecccCCCceEEEeeccccceeeecccccccccccccceeeeecccccCCcceeecccccc
Confidence            54  4445555666689999999999888766 45677777644322   1234567788999984

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.59  E-value=3.5e-14  Score=145.00  Aligned_cols=194  Identities=11%  Similarity=0.050  Sum_probs=139.7

Q ss_pred             CeEEEEEeCCCCCEE-EEEECCCeEEEEECCCCeEEEEeecCC---CCCCeEEEEEeeCCCCEEEEEeC-----------
Q 004969          455 RPRQFEYHPSISCLM-VFGTLDGEIVVVNHENENIVSYIPSFG---AMNSVLGLCWLKKYPSKLIAGSD-----------  519 (721)
Q Consensus       455 ~V~~lafsP~dg~~L-asGs~DG~I~IWdl~tg~~i~~l~~~~---H~~~V~sl~fsp~d~~~LaSgs~-----------  519 (721)
                      .|..++|+| ||+++ ++++.+|.|.+||+.+++.+..+....   +...+..++|+ ++++++++++.           
T Consensus        35 ~~~~i~~sp-Dg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s-~dg~~l~~~~~~~~~~~~~~~~  112 (337)
T d1pbyb_          35 TPMVPMVAP-GGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALS-PDGKTLAIYESPVRLELTHFEV  112 (337)
T ss_dssp             CCCCEEECT-TSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEEC-TTSSEEEEEEEEEEECSSCEEE
T ss_pred             CccEEEECC-CCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEc-CCCcEEEEeecCCcceeeeccc
Confidence            377899999 88876 567789999999999999988876421   12345578998 78888877764           


Q ss_pred             -CCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcc--------
Q 004969          520 -NGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD--------  590 (721)
Q Consensus       520 -DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~--------  590 (721)
                       ++.+.+||..++..          ...+.....+..++++|++..+++++.+  +.+||..+++....+..        
T Consensus       113 ~~~~~~~~d~~~~~~----------~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~  180 (337)
T d1pbyb_         113 QPTRVALYDAETLSR----------RKAFEAPRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETY  180 (337)
T ss_dssp             CCCEEEEEETTTTEE----------EEEEECCSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTB
T ss_pred             cccceeeccccCCeE----------EEeccccCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCccccce
Confidence             56777888877432          2333445567888999999988887644  66788776654443311        


Q ss_pred             ---------------------------------------------------------ccCCCeEEEEEcCCCCcEEEEEE
Q 004969          591 ---------------------------------------------------------MHKEHINVVKFSNHSPSIFATSS  613 (721)
Q Consensus       591 ---------------------------------------------------------~h~~~V~sI~fsPdg~~lLaSgs  613 (721)
                                                                               .+...+..+.++|++ .+++++ 
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-  258 (337)
T d1pbyb_         181 AQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK-TRAFGA-  258 (337)
T ss_dssp             CCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTS-SEEEEE-
T ss_pred             ecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccc-eEEEEc-
Confidence                                                                     123344556666766 455444 


Q ss_pred             CCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          614 FDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       614 ~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                       ++.|++||+.+++..  ........+.+++|+|||++|++++.++.|+|||..
T Consensus       259 -~~~i~v~d~~~~~~~--~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~  309 (337)
T d1pbyb_         259 -YNVLESFDLEKNASI--KRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAE  309 (337)
T ss_dssp             -ESEEEEEETTTTEEE--EEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETT
T ss_pred             -cccEEEEECCCCcEE--EEEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence             588999999998654  333434445589999999999999999999999998

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.57  E-value=9.7e-14  Score=150.24  Aligned_cols=190  Identities=13%  Similarity=0.113  Sum_probs=131.2

Q ss_pred             CEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCccc-ccccCccee
Q 004969          467 CLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIR-GMHYGAGTV  545 (721)
Q Consensus       467 ~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~-~~~~~~~~~  545 (721)
                      -++++++.||+|+|||+.+++.+.+++  .| ..+.+++|+ ++++++++++.||+|++||+.+++.... .+...    
T Consensus        33 ~~~V~~~~dg~v~vwD~~t~~~~~~l~--~g-~~~~~vafS-PDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~----  104 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDSKKIVKVID--TG-YAVHISRMS-ASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG----  104 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTCSEEEEEE--CC-SSEEEEEEC-TTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC----
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEe--CC-CCeeEEEEC-CCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCC----
Confidence            356778899999999999999999997  44 469999998 7999999999999999999998765211 11100    


Q ss_pred             EeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEccccCC-----------CeEEEEEcCCCCcEEEEEE
Q 004969          546 TFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKE-----------HINVVKFSNHSPSIFATSS  613 (721)
Q Consensus       546 ~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~v~~l~~~h~~-----------~V~sI~fsPdg~~lLaSgs  613 (721)
                       ..+...+.+++|+|+|.++++++ .++.+++||..++..+..+.. |..           ....+.+++++..++.+..
T Consensus       105 -~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~  182 (426)
T d1hzua2         105 -IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVST-RGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK  182 (426)
T ss_dssp             -SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEEC-CEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred             -CCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeec-cCCCccceeecCCCceeEEEECCCCCEEEEecC
Confidence             01223356677788999887665 689999999999998887764 433           3445566666643334444


Q ss_pred             CCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeC-CCcEEEEEc
Q 004969          614 FDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGS-GTSMFVQSL  666 (721)
Q Consensus       614 ~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~-Dg~I~VWDl  666 (721)
                      ..+.+.+++........+...........+.|+|+|++++++.. ++.+.+|+.
T Consensus       183 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~  236 (426)
T d1hzua2         183 ETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDS  236 (426)
T ss_dssp             TTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEET
T ss_pred             CCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeec
Confidence            44556666665544333333444444558999999998886653 334555554

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.56  E-value=6.3e-14  Score=153.03  Aligned_cols=170  Identities=8%  Similarity=-0.031  Sum_probs=121.9

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeE--EEEeec-CCCCCCeEEEEEeeCCCCEE-EEEeCCCeEEEEEcCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENI--VSYIPS-FGAMNSVLGLCWLKKYPSKL-IAGSDNGSLKLYDIRH  530 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~--i~~l~~-~~H~~~V~sl~fsp~d~~~L-aSgs~DGtVrIWDi~~  530 (721)
                      .|..++|+| ||+++++++.||+|++||+.+++.  ...++. .+|.+.+.+..|+ +++++| ++++.+++|++||..+
T Consensus        63 ~~~~v~fSp-DG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~S-pDG~~l~vs~~~~~~v~i~d~~t  140 (432)
T d1qksa2          63 AVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEG-WEDKYAIAGAYWPPQYVIMDGET  140 (432)
T ss_dssp             CEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTT-CTTTEEEEEEEETTEEEEEETTT
T ss_pred             CeeEEEECC-CCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccC-CCCCEEEEEcCCCCeEEEEeCcc
Confidence            388999999 999999999999999999988763  344432 2445556666666 678865 7788899999999998


Q ss_pred             CCCccccc--ccCcceeEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCc
Q 004969          531 MPPSIRGM--HYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPS  607 (721)
Q Consensus       531 ~~~~~~~~--~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~  607 (721)
                      ++......  ........+........+.+++++..++++. .++.|.+||..+++........+...+..++|+|+|..
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~  220 (432)
T d1qksa2         141 LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRY  220 (432)
T ss_dssp             CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCE
T ss_pred             ccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCE
Confidence            76522111  1111122344455678889999998876655 57999999999877554433226678899999999943


Q ss_pred             EEEEEECCCcEEEEECCCC
Q 004969          608 IFATSSFDQDVKLWDLRQK  626 (721)
Q Consensus       608 lLaSgs~DgtIrIWDlrs~  626 (721)
                      +++++..++.+.+||..++
T Consensus       221 ~~va~~~~~~v~v~d~~~~  239 (432)
T d1qksa2         221 FITAANARNKLVVIDTKEG  239 (432)
T ss_dssp             EEEEEGGGTEEEEEETTTT
T ss_pred             EEEeccccceEEEeecccc
Confidence            4444555668889998764

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.56  E-value=4.5e-14  Score=144.80  Aligned_cols=72  Identities=7%  Similarity=-0.039  Sum_probs=60.5

Q ss_pred             EEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEE-EEEeCCCeEEEEEcCCCCC
Q 004969          459 FEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKL-IAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       459 lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~L-aSgs~DGtVrIWDi~~~~~  533 (721)
                      ++|++ +++++++++.|++|.|||+.+++.+.+++. .|...+.+++|+ ++++++ ++++.++.|.+||+.+++.
T Consensus         2 ~a~~~-~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~-~~~~~p~~l~~s-pDG~~l~v~~~~~~~v~~~d~~t~~~   74 (346)
T d1jmxb_           2 PALKA-GHEYMIVTNYPNNLHVVDVASDTVYKSCVM-PDKFGPGTAMMA-PDNRTAYVLNNHYGDIYGIDLDTCKN   74 (346)
T ss_dssp             CCCCT-TCEEEEEEETTTEEEEEETTTTEEEEEEEC-SSCCSSCEEEEC-TTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             ccCCC-CCcEEEEEcCCCEEEEEECCCCCEEEEEEc-CCCCCcceEEEC-CCCCEEEEEECCCCcEEEEeCccCee
Confidence            35778 899999999999999999999999998874 445667899998 677776 5666899999999988654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.7e-14  Score=136.84  Aligned_cols=144  Identities=23%  Similarity=0.369  Sum_probs=122.1

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhcc
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM  179 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (721)
                      .|||.+||+.+-+  ..+.+++..--.=++|||++|+|+++..++.+++|++|+|. +|.|+.++.+.|..||+|+.|.|
T Consensus        18 ~~lr~L~L~~n~I--~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls-~N~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          18 VRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVN-NNRICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             TSCEEEECTTSCC--CSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECC-SSCCCEECSCHHHHCTTCCEEEC
T ss_pred             CcCcEEECCCCCC--CccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcc-cccccCCCcccccccccccccee
Confidence            4899999999644  33445543222347799999999999999999999999999 88899999999999999999999


Q ss_pred             ccccchhhhHHHHHhhcCCcchhhccceeeecCCCCCCCCCCCCCCcccccccccCCCCCCCcceeecCCCcccccCCCC
Q 004969          180 CETRVGNLWTTIAALSKLPSLAELRFQNWLCCDDTGNSSGSSDQDDKTDFSQLNICSSFGAYGNVVINPDSQILVEDSSD  259 (721)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (721)
                      .+|+|.+ |..+.+|.++|+|++|                                                        
T Consensus        95 ~~N~i~~-~~~l~~l~~l~~L~~L--------------------------------------------------------  117 (162)
T d1a9na_          95 TNNSLVE-LGDLDPLASLKSLTYL--------------------------------------------------------  117 (162)
T ss_dssp             CSCCCCC-GGGGGGGGGCTTCCEE--------------------------------------------------------
T ss_pred             ccccccc-cccccccccccccchh--------------------------------------------------------
Confidence            9999986 4667788888888555                                                        


Q ss_pred             CccchhcccccchhhhhhhccCCcCCCcccccccccccccccCcccCCchHHHHhhhcccccccccccCCCCccchHHHH
Q 004969          260 DSEVDFSIQHREYDYLELLSNLVPQLDGEIDLWNEVSFDAFSNQNEEESSAGVLARCTADVSLKYISCHASPICFEKHYR  339 (721)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pi~~~~~yR  339 (721)
                                                                                        ....+|++..++||
T Consensus       118 ------------------------------------------------------------------~l~~N~i~~~~~~r  131 (162)
T d1a9na_         118 ------------------------------------------------------------------CILRNPVTNKKHYR  131 (162)
T ss_dssp             ------------------------------------------------------------------ECCSSGGGGSTTHH
T ss_pred             ------------------------------------------------------------------hcCCCccccccchH
Confidence                                                                              35678888889999


Q ss_pred             HHHHHhCccccccCCCCcChHHHHhhhccc
Q 004969          340 DYMIASLPKLKFLDNLPIRKVDRERATITY  369 (721)
Q Consensus       340 e~~I~~Lp~Lk~Ldn~~I~k~ere~a~~~~  369 (721)
                      .+++..+|+|++||+.+|...+|+.|.+.|
T Consensus       132 ~~~i~~lp~L~~LD~~~i~~~er~~A~~~~  161 (162)
T d1a9na_         132 LYVIYKVPQVRVLDFQKVKLKERQEAEKMF  161 (162)
T ss_dssp             HHHHHHCTTCSEETTEECCHHHHHHHHHTT
T ss_pred             HHHHHHCCCcCeeCCCCCCHHHHHHHHHHh
Confidence            999999999999999999999999888765

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=6.7e-12  Score=128.15  Aligned_cols=150  Identities=11%  Similarity=0.089  Sum_probs=107.4

Q ss_pred             EEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEE-EeCCCeEEEEEcCCCCCcccccccCcceeE
Q 004969          468 LMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIA-GSDNGSLKLYDIRHMPPSIRGMHYGAGTVT  546 (721)
Q Consensus       468 ~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaS-gs~DGtVrIWDi~~~~~~~~~~~~~~~~~~  546 (721)
                      .+++++.|++|++|++.+...+..++...|.+.+.+|+|+ +++++|++ +..|+.|++|++.........      ...
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~s-pDG~~L~v~~~~d~~i~~~~i~~~~~~~~~------~~~   78 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVS-PDKRYLYVGVRPEFRVLAYRIAPDDGALTF------AAE   78 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEEC-TTSSEEEEEETTTTEEEEEEECTTTCCEEE------EEE
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEe-CCCCEEEEEECCCCeEEEEEEeCCCCcEEE------eee
Confidence            4678889999999999765444334333677889999998 78888855 456899999999875442111      112


Q ss_pred             eccCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCcEEEEEc-cccCCCeEEEEEcCCCCcEEEEEE-CCCcEEEEEC
Q 004969          547 FDEFDQLTSVHVNSMDELFLASGY-SKNIALYDINSGRRLQVFA-DMHKEHINVVKFSNHSPSIFATSS-FDQDVKLWDL  623 (721)
Q Consensus       547 ~~~~~~V~sv~~sp~~~~lls~g~-Dg~IrlWDl~s~~~v~~l~-~~h~~~V~sI~fsPdg~~lLaSgs-~DgtIrIWDl  623 (721)
                      ......+..++|+|++.++++++. ++.|.+|+........... ..+...+.++.++|++ +.+++++ .+..|.+|+.
T Consensus        79 ~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~-~~~~~~~~~~~~i~~~~~  157 (333)
T d1ri6a_          79 SALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDN-RTLWVPALKQDRICLFTV  157 (333)
T ss_dssp             EECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTS-SEEEEEEGGGTEEEEEEE
T ss_pred             cccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecc-eeeeccccccceeeEEEe
Confidence            223345678999999999999885 6789999988766544332 1266778899999999 5555554 5667888887


Q ss_pred             CC
Q 004969          624 RQ  625 (721)
Q Consensus       624 rs  625 (721)
                      ..
T Consensus       158 ~~  159 (333)
T d1ri6a_         158 SD  159 (333)
T ss_dssp             CT
T ss_pred             cc
Confidence            65

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=1.9e-11  Score=124.67  Aligned_cols=204  Identities=9%  Similarity=0.097  Sum_probs=125.4

Q ss_pred             CeEEEEEeCCCCCEEEEE-ECCCeEEEEECCCCeEEEEe-ecCCCCCCeEEEEEeeCCCCEEEEEeC-CCeEEEEEcCCC
Q 004969          455 RPRQFEYHPSISCLMVFG-TLDGEIVVVNHENENIVSYI-PSFGAMNSVLGLCWLKKYPSKLIAGSD-NGSLKLYDIRHM  531 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasG-s~DG~I~IWdl~tg~~i~~l-~~~~H~~~V~sl~fsp~d~~~LaSgs~-DGtVrIWDi~~~  531 (721)
                      .|..++|+| ||++|+++ ..|+.|++|++..+.....+ ....+...+.+++|+ +++++|++++. ++.|.+|+....
T Consensus        38 ~v~~la~sp-DG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~s-pDg~~l~v~~~~~~~v~~~~~~~~  115 (333)
T d1ri6a_          38 QVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTD-HQGQFVFVGSYNAGNVSVTRLEDG  115 (333)
T ss_dssp             CCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEEC-TTSSEEEEEETTTTEEEEEEEETT
T ss_pred             CEeEEEEeC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEc-CCCCEEeecccCCCceeeeccccc
Confidence            478899999 89988555 45899999999765422221 111344567789998 78888888874 779999988764


Q ss_pred             CCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCcEE-------------------------
Q 004969          532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-SKNIALYDINSGRRL-------------------------  585 (721)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-Dg~IrlWDl~s~~~v-------------------------  585 (721)
                      ....       ......+...+.++.++|++..+++++. +..|.+|+.......                         
T Consensus       116 ~~~~-------~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~  188 (333)
T d1ri6a_         116 LPVG-------VVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNE  188 (333)
T ss_dssp             EEEE-------EEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTS
T ss_pred             ccee-------cccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccc
Confidence            3211       0111222334555666666666655553 344666655432110                         


Q ss_pred             ----------------------------EEEcc-----ccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCcee-E
Q 004969          586 ----------------------------QVFAD-----MHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQP-C  631 (721)
Q Consensus       586 ----------------------------~~l~~-----~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~-~  631 (721)
                                                  .....     ........+++++++..+++++..++.+.+|++....... .
T Consensus       189 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (333)
T d1ri6a_         189 QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSK  268 (333)
T ss_dssp             SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEE
T ss_pred             eeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEE
Confidence                                        00000     0123455677888885566666778889999887543222 1


Q ss_pred             E-EecCCCCeEEEEEecCCCEEEEEeC-CCcEEEEEcC
Q 004969          632 Y-TASSSKGNVMVCFSPDDHYLLGKGS-GTSMFVQSLR  667 (721)
Q Consensus       632 ~-~~~~~~~~vsl~fSpdg~~Lasgs~-Dg~I~VWDl~  667 (721)
                      . .......+..++|+|||++|++++. ++.|.+|++.
T Consensus       269 ~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id  306 (333)
T d1ri6a_         269 EGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV  306 (333)
T ss_dssp             EEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             EEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence            1 2222233447899999999887754 6889999775

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.23  E-value=1.5e-09  Score=112.85  Aligned_cols=207  Identities=11%  Similarity=-0.055  Sum_probs=122.2

Q ss_pred             EEEEeCCCCCEEEEEE----------CCCeEEEEECCCCeEEEEeecCC-------------------------------
Q 004969          458 QFEYHPSISCLMVFGT----------LDGEIVVVNHENENIVSYIPSFG-------------------------------  496 (721)
Q Consensus       458 ~lafsP~dg~~LasGs----------~DG~I~IWdl~tg~~i~~l~~~~-------------------------------  496 (721)
                      .++|+| ||+++++++          .++.|.+||..+++.+..+....                               
T Consensus        70 ~~a~Sp-DG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~  148 (373)
T d2madh_          70 NPVAAH-SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGP  148 (373)
T ss_pred             cEEEcC-CCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCC
Confidence            689999 999998875          46889999999888765543210                               


Q ss_pred             --------------CCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCC
Q 004969          497 --------------AMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD  562 (721)
Q Consensus       497 --------------H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~  562 (721)
                                    +.....++.++|.....+++.+.||++.+|+...+...........   ............+. .+
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~  224 (373)
T d2madh_         149 AVGLVVQGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAML---TAAQNLLTQPAQAN-KS  224 (373)
T ss_pred             ceEEeeccCCeEEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeecc---ccCccceeeeEEEC-CC
Confidence                          1111223444433333455666677777777665433111000000   00000112233343 34


Q ss_pred             CEEEEEeCCCcEEEEECCCCcEEEEEcc-cc----------CCCeEEEEEcCCCC---------cEEEEEECCCcEEEEE
Q 004969          563 ELFLASGYSKNIALYDINSGRRLQVFAD-MH----------KEHINVVKFSNHSP---------SIFATSSFDQDVKLWD  622 (721)
Q Consensus       563 ~~lls~g~Dg~IrlWDl~s~~~v~~l~~-~h----------~~~V~sI~fsPdg~---------~lLaSgs~DgtIrIWD  622 (721)
                      ..++..+.++.+.+|+..++........ .+          ......++++|++.         ..+++...++.+.+||
T Consensus       225 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d  304 (373)
T d2madh_         225 GRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVT  304 (373)
T ss_pred             ceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEE
Confidence            4566677789999999887654322110 01          12233455666652         2334556678899999


Q ss_pred             CCCCCceeEEEecCCCCeEEEEEecCCCE--EEEEeCCCcEEEEEcC-CCcc
Q 004969          623 LRQKPIQPCYTASSSKGNVMVCFSPDDHY--LLGKGSGTSMFVQSLR-GDPF  671 (721)
Q Consensus       623 lrs~~~~~~~~~~~~~~~vsl~fSpdg~~--Lasgs~Dg~I~VWDl~-g~~l  671 (721)
                      ..+++.  +..+........++|+|||+.  +++++.|+.|+|||+. |+.+
T Consensus       305 ~~t~~~--~~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~  354 (373)
T d2madh_         305 GLVGQT--SSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQD  354 (373)
T ss_pred             CCCCcE--EEEecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEE
Confidence            999855  444444455568999999984  4678899999999998 5443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.23  E-value=8.6e-11  Score=121.27  Aligned_cols=210  Identities=7%  Similarity=-0.058  Sum_probs=134.4

Q ss_pred             EEEEEeCCCCCEEEEE----------ECCCeEEEEECCCCeEEEEeecCC-----CCCCeEEEEEeeCCCCEEEEEe--C
Q 004969          457 RQFEYHPSISCLMVFG----------TLDGEIVVVNHENENIVSYIPSFG-----AMNSVLGLCWLKKYPSKLIAGS--D  519 (721)
Q Consensus       457 ~~lafsP~dg~~LasG----------s~DG~I~IWdl~tg~~i~~l~~~~-----H~~~V~sl~fsp~d~~~LaSgs--~  519 (721)
                      ..++|+| |+++|++.          ..||.|++||..+++.+..+....     .......++|+ ++++.++.++  .
T Consensus        50 ~~~a~Sp-Dg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~~~v~~~~~  127 (355)
T d2bbkh_          50 PNPVVAD-DGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLT-PDGKTLLFYQFSP  127 (355)
T ss_dssp             CEEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEEC-TTSSEEEEEECSS
T ss_pred             CceEEcC-CCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEe-cCCCeeEEecCCC
Confidence            3689999 88877654          457899999999999888765321     11233567888 6777776664  5


Q ss_pred             CCeEEEEEcCCCCCcccccc---------cCcceeEe---------------------------ccCCCeEEEEEecCCC
Q 004969          520 NGSLKLYDIRHMPPSIRGMH---------YGAGTVTF---------------------------DEFDQLTSVHVNSMDE  563 (721)
Q Consensus       520 DGtVrIWDi~~~~~~~~~~~---------~~~~~~~~---------------------------~~~~~V~sv~~sp~~~  563 (721)
                      +..+.+|+..+++.......         .....+.+                           .+...+....+.+.+.
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (355)
T d2bbkh_         128 APAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG  207 (355)
T ss_dssp             SCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT
T ss_pred             CceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCC
Confidence            67899999987653110000         00000000                           0112244456777888


Q ss_pred             EEEEEeCCCcEEEEECCCCcEEEE--Ecc---------ccCCCeEEEEEcCCCCcEEEEEECC----------CcEEEEE
Q 004969          564 LFLASGYSKNIALYDINSGRRLQV--FAD---------MHKEHINVVKFSNHSPSIFATSSFD----------QDVKLWD  622 (721)
Q Consensus       564 ~lls~g~Dg~IrlWDl~s~~~v~~--l~~---------~h~~~V~sI~fsPdg~~lLaSgs~D----------gtIrIWD  622 (721)
                      .++.++.++.+++|++..++....  ...         ........++++|++ ..++..+.+          ..|.+||
T Consensus       208 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~-~~~~~~~~~~~~~~~~~~~~~v~v~d  286 (355)
T d2bbkh_         208 RLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL-DRIYLLVDQRDEWRHKTASRFVVVLD  286 (355)
T ss_dssp             EEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTT-TEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred             eEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCC-CeEEEEeccCCceeecCCCCeEEEEe
Confidence            889889999999999998754321  111         011233458899998 455444332          3699999


Q ss_pred             CCCCCceeEEEecCCCCeEEEEEecCCC--EEEEEeCCCcEEEEEcC-CCcc
Q 004969          623 LRQKPIQPCYTASSSKGNVMVCFSPDDH--YLLGKGSGTSMFVQSLR-GDPF  671 (721)
Q Consensus       623 lrs~~~~~~~~~~~~~~~vsl~fSpdg~--~Lasgs~Dg~I~VWDl~-g~~l  671 (721)
                      ..+++....  +.....+.+++|+|||+  ++++++.|+.|+|||++ ++.+
T Consensus       287 ~~t~~~~~~--~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~  336 (355)
T d2bbkh_         287 AKTGERLAK--FEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL  336 (355)
T ss_dssp             TTTCCEEEE--EEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred             CCCCcEEEE--ecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEE
Confidence            999865433  33333344899999998  34566779999999997 4433

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.23  E-value=2.4e-09  Score=111.27  Aligned_cols=160  Identities=10%  Similarity=-0.021  Sum_probs=113.4

Q ss_pred             CeEEEEEeCCCCCEEEEE-----ECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEe----------C
Q 004969          455 RPRQFEYHPSISCLMVFG-----TLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS----------D  519 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasG-----s~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs----------~  519 (721)
                      .+..++++| +++.+++.     +..+.|.+||..+++.+..+.  .+..  ..++|+ ++++++++++          .
T Consensus        22 p~~~~a~sp-dg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~--~~~~--~~~a~S-pDG~~l~va~~~~~~~~~~~~   95 (373)
T d2madh_          22 PTNDEAPGA-DGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVN--GGFL--PNPVAA-HSGSEFALASTSFSRIAKGKR   95 (373)
T ss_pred             CccccccCC-CCCEEEEEcccccCCCceEEEEECCCCCEEEEEe--CCCC--ccEEEc-CCCCEEEEEeecCCccccccc
Confidence            467788999 88887664     245679999999999998886  3333  368998 6888888875          4


Q ss_pred             CCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe--CCCcEEEEECCCCcEEEEEccccCCCeE
Q 004969          520 NGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG--YSKNIALYDINSGRRLQVFADMHKEHIN  597 (721)
Q Consensus       520 DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g--~Dg~IrlWDl~s~~~v~~l~~~h~~~V~  597 (721)
                      ++.|.+||..+++.... ...+.... .........+.|++++..+++..  .++.+.+|+....+......     ...
T Consensus        96 ~~~v~v~D~~t~~~~~~-~~~~~~~~-~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----~~~  168 (373)
T d2madh_          96 TDYVEVFDPVTFLPIAD-IELPDAPR-FDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS-----SPT  168 (373)
T ss_pred             ceEEEEEECCCCcEEEE-EecCCcce-eEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec-----cce
Confidence            68899999998765211 11111100 00111235577888888776665  35789999988877654443     467


Q ss_pred             EEEEcCCCCcEEEEEECCCcEEEEECCCCC
Q 004969          598 VVKFSNHSPSIFATSSFDQDVKLWDLRQKP  627 (721)
Q Consensus       598 sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~  627 (721)
                      ++.++|++...+++.+.|+.+.+||...+.
T Consensus       169 ~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~  198 (373)
T d2madh_         169 CYHIHPGAPSTFYLLCAQGGLAKTDHAGGA  198 (373)
T ss_pred             eEEEecCCCcEEEEEcCCCeEEEEEcCCce
Confidence            889999997788899999999999987643

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.17  E-value=8.7e-10  Score=113.50  Aligned_cols=220  Identities=10%  Similarity=0.056  Sum_probs=141.4

Q ss_pred             EEeCCCCCEEEEEE-----CCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEE----------eCCCeEE
Q 004969          460 EYHPSISCLMVFGT-----LDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAG----------SDNGSLK  524 (721)
Q Consensus       460 afsP~dg~~LasGs-----~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSg----------s~DGtVr  524 (721)
                      +.+| ++..+++..     .+++|.+||..+++.+.++..  +  .+..++|+ +++++|+++          +.|+.|+
T Consensus         8 a~sp-dg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~--g--~~~~~a~S-pDg~~l~v~~~~~~~~~~g~~d~~v~   81 (355)
T d2bbkh_           8 APAP-DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG--G--FLPNPVVA-DDGSFIAHASTVFSRIARGERTDYVE   81 (355)
T ss_dssp             CCCC-CTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE--C--SSCEEEEC-TTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             eeCC-CCCEEEEEecccCCCcCeEEEEECCCCcEEEEEEC--C--CCCceEEc-CCCCEEEEEeCCCccccccCCCCEEE
Confidence            3467 888887653     466899999999999988873  3  33378998 788877654          4578999


Q ss_pred             EEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe--CCCcEEEEECCCCcEEEEEcccc----------
Q 004969          525 LYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG--YSKNIALYDINSGRRLQVFADMH----------  592 (721)
Q Consensus       525 IWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g--~Dg~IrlWDl~s~~~v~~l~~~h----------  592 (721)
                      +||..+++.... ...+.... .........+.|++++..++++.  .+..+.+||..+++.+..+....          
T Consensus        82 v~D~~t~~~~~~-~~~~~~~~-~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (355)
T d2bbkh_          82 VFDPVTLLPTAD-IELPDAPR-FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPD  159 (355)
T ss_dssp             EECTTTCCEEEE-EEETTCCC-CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETT
T ss_pred             EEECCCCCEEEE-EecCCcce-eecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCc
Confidence            999998765211 11111100 11112345678999999888775  36789999999887766544200          


Q ss_pred             ----------------------------------CCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCC
Q 004969          593 ----------------------------------KEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSK  638 (721)
Q Consensus       593 ----------------------------------~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~  638 (721)
                                                        ...+....+.+++ ..++.++.++.+++|++..+....+.....+.
T Consensus       160 ~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  238 (355)
T d2bbkh_         160 TFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKA-GRLVWPTYTGKIHQIDLSSGDAKFLPAVEALT  238 (355)
T ss_dssp             EEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTT-TEEEEEBTTSEEEEEECTTSSCEECCCEESSC
T ss_pred             ceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCC-CeEEEecCCCeEEEEecCCCcEEEEeccCCcc
Confidence                                              0011122344444 46777888999999999876543222111111


Q ss_pred             -----------CeEEEEEecCCCEEEEEeCC----------CcEEEEEcC-CCccccc--ccCeEEEEECCCCC
Q 004969          639 -----------GNVMVCFSPDDHYLLGKGSG----------TSMFVQSLR-GDPFRDF--NMSILAAYTRPSSK  688 (721)
Q Consensus       639 -----------~~vsl~fSpdg~~Lasgs~D----------g~I~VWDl~-g~~l~~~--~~~V~~v~fsP~~~  688 (721)
                                 +...+++++++..++....+          +.|.+||.. ++.+...  ...+.+++|+|+++
T Consensus       239 ~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~  312 (355)
T d2bbkh_         239 EAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEK  312 (355)
T ss_dssp             HHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSS
T ss_pred             cceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCC
Confidence                       11247899999988876543          368999988 4433322  44678899999983

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.14  E-value=6.6e-10  Score=112.96  Aligned_cols=175  Identities=9%  Similarity=0.008  Sum_probs=117.8

Q ss_pred             CeEEEEEeCCCCCEE-EEEECCCeEEEEECCCCeEEEEeecCCC----CCCeEEEEEeeCCCCEEEEEe-----------
Q 004969          455 RPRQFEYHPSISCLM-VFGTLDGEIVVVNHENENIVSYIPSFGA----MNSVLGLCWLKKYPSKLIAGS-----------  518 (721)
Q Consensus       455 ~V~~lafsP~dg~~L-asGs~DG~I~IWdl~tg~~i~~l~~~~H----~~~V~sl~fsp~d~~~LaSgs-----------  518 (721)
                      .+.+++|+| |++++ ++++.++.|++||+.+++.+..+.....    ...+..++|+ ++++++++++           
T Consensus        41 ~p~~l~~sp-DG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s-~DG~~l~v~~~~~~~~~~~~~  118 (346)
T d1jmxb_          41 GPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAIS-PDGKEVYATVNPTQRLNDHYV  118 (346)
T ss_dssp             SSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEEC-TTSSEEEEEEEEEEECSSCEE
T ss_pred             CcceEEECC-CCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEe-cCCCEEEEEecCCcceeeeec
Confidence            378999999 88876 5666899999999999998877754221    1234567777 6777666554           


Q ss_pred             -CCCeEEEEEcCCCCCcc----------------------------------------cccccC----------------
Q 004969          519 -DNGSLKLYDIRHMPPSI----------------------------------------RGMHYG----------------  541 (721)
Q Consensus       519 -~DGtVrIWDi~~~~~~~----------------------------------------~~~~~~----------------  541 (721)
                       .++.+.+|+..+++...                                        .....+                
T Consensus       119 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (346)
T d1jmxb_         119 VKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFW  198 (346)
T ss_dssp             ECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCC
T ss_pred             cCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEE
Confidence             35566666665422100                                        000000                


Q ss_pred             -----c---------------------------------------ceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 004969          542 -----A---------------------------------------GTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALY  577 (721)
Q Consensus       542 -----~---------------------------------------~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlW  577 (721)
                           .                                       ......+...+..+.+++++..++..+ ++.|++|
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~  277 (346)
T d1jmxb_         199 PHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKY  277 (346)
T ss_dssp             CCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEE
T ss_pred             EEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEE
Confidence                 0                                       000001223355666667776666554 4679999


Q ss_pred             ECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEec
Q 004969          578 DINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTAS  635 (721)
Q Consensus       578 Dl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~  635 (721)
                      |..+++.+..+.  +...+.+++|+||| +++++++.|+.|++||.++.+......++
T Consensus       278 d~~~~~~~~~~~--~~~~~~~va~s~DG-~~l~v~~~d~~v~v~D~~t~~~i~~i~~p  332 (346)
T d1jmxb_         278 DLKQRKLIKAAN--LDHTYYCVAFDKKG-DKLYLGGTFNDLAVFNPDTLEKVKNIKLP  332 (346)
T ss_dssp             ETTTTEEEEEEE--CSSCCCEEEECSSS-SCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             ECCCCcEEEEEc--CCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECccCCEEEEEECC
Confidence            999999998887  55679999999999 78889999999999999998664444443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.83  E-value=1.4e-08  Score=109.85  Aligned_cols=228  Identities=10%  Similarity=0.040  Sum_probs=150.9

Q ss_pred             eEEEEEeCCCCCEEEEE-ECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCC--EEEEEeCCC-----------
Q 004969          456 PRQFEYHPSISCLMVFG-TLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPS--KLIAGSDNG-----------  521 (721)
Q Consensus       456 V~~lafsP~dg~~LasG-s~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~--~LaSgs~DG-----------  521 (721)
                      +....++| ||+++++. ..+++|.++|+.+++....+.. .+...+.+++|+ ++++  +++..+.+.           
T Consensus        74 ~s~t~gtp-DGr~lfV~d~~~~rVavIDl~t~k~~~ii~i-P~g~gphgi~~s-pdg~t~YV~~~~~~~v~~~~dg~~~~  150 (441)
T d1qnia2          74 ISMTDGRY-DGKYLFINDKANTRVARIRLDIMKTDKITHI-PNVQAIHGLRLQ-KVPKTNYVFCNAEFVIPQPNDGTDFS  150 (441)
T ss_dssp             EEEETTEE-EEEEEEEEETTTTEEEEEETTTTEEEEEEEC-TTCCCEEEEEEC-CSSBCCEEEEEECSCEESSCSSSCCC
T ss_pred             cceecccC-CCCEEEEEcCCCCEEEEEECCCCcEeeEEec-CCCCCccceEEe-ccCCEEEEEeccCCcccccCcccccc
Confidence            44555678 88888555 5788999999999998877653 456789999998 5555  444444332           


Q ss_pred             ------eEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC-------------------------
Q 004969          522 ------SLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-------------------------  570 (721)
Q Consensus       522 ------tVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-------------------------  570 (721)
                            .+..+|..+.+.          ..+.........+.++|++.++++++.                         
T Consensus       151 ~~~~~~~~~~iD~~t~~v----------~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p  220 (441)
T d1qnia2         151 LDNSYTMFTAIDAETMDV----------AWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVE  220 (441)
T ss_dssp             GGGEEEEEEEEETTTCSE----------EEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHH
T ss_pred             cccccceEEeecCcccee----------eEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCcc
Confidence                  223455555332          111122234567788888888777753                         


Q ss_pred             ----------------CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCC------c
Q 004969          571 ----------------SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKP------I  628 (721)
Q Consensus       571 ----------------Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~------~  628 (721)
                                      ++.+.+++....+.+..+..  ......+.++|||.++++++..+++|.+||+.+..      .
T Consensus       221 ~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPv--gksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~  298 (441)
T d1qnia2         221 RIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPV--PKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKI  298 (441)
T ss_dssp             HHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECC--BSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSS
T ss_pred             ceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeC--CCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccC
Confidence                            24455565555566666663  33467899999996677788899999999986521      0


Q ss_pred             --ee--EEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC-------CC---cc---------cccccCeEEEEECC
Q 004969          629 --QP--CYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR-------GD---PF---------RDFNMSILAAYTRP  685 (721)
Q Consensus       629 --~~--~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~-------g~---~l---------~~~~~~V~~v~fsP  685 (721)
                        ..  .......-++...+|+++|..+.+...|..|..|++.       +.   ++         .+|...+.+..++|
T Consensus       299 ~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~p  378 (441)
T d1qnia2         299 ELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDA  378 (441)
T ss_dssp             CGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTC
T ss_pred             CcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCC
Confidence              01  1222233344557899999888888899999999974       11   11         24444555667899


Q ss_pred             CCCcccccccEEEEecCCCc
Q 004969          686 SSKSEIVKVNLLASTDHCDK  705 (721)
Q Consensus       686 ~~~~~~v~v~lLASgs~~~k  705 (721)
                      ++       ..|++++.-.|
T Consensus       379 dG-------k~l~s~~k~s~  391 (441)
T d1qnia2         379 DG-------KWLVVLSKFSK  391 (441)
T ss_dssp             CC-------CEEEEEESCCG
T ss_pred             CC-------cEEEecCcccc
Confidence            99       89999987734

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.81  E-value=1.9e-08  Score=105.29  Aligned_cols=209  Identities=8%  Similarity=-0.110  Sum_probs=121.1

Q ss_pred             EEEEeCCCCCEEEEEE----------CCCeEEEEECCCCeEEEEeecCCC-----CCCeEEEEEeeCCCCEEEEEe-CCC
Q 004969          458 QFEYHPSISCLMVFGT----------LDGEIVVVNHENENIVSYIPSFGA-----MNSVLGLCWLKKYPSKLIAGS-DNG  521 (721)
Q Consensus       458 ~lafsP~dg~~LasGs----------~DG~I~IWdl~tg~~i~~l~~~~H-----~~~V~sl~fsp~d~~~LaSgs-~DG  521 (721)
                      .++|+| +++.+++.+          .|++|.+||..+++.+..+..+.+     ......++|+ +++++++++. .++
T Consensus        69 ~~a~sp-Dg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~S-pDGk~l~va~~~~~  146 (368)
T d1mdah_          69 LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNC-ASSACLLFFLFGSS  146 (368)
T ss_dssp             EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEEC-TTSSCEEEEECSSS
T ss_pred             cceECC-CCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEEC-CCCCEEEEEeCCCC
Confidence            588999 888888754          478899999999999888764221     1223468898 7888777665 679


Q ss_pred             eEEEEEcCCCCCcccccccC---------cceeEec---------------------------cCCCeEEEEEecCCCEE
Q 004969          522 SLKLYDIRHMPPSIRGMHYG---------AGTVTFD---------------------------EFDQLTSVHVNSMDELF  565 (721)
Q Consensus       522 tVrIWDi~~~~~~~~~~~~~---------~~~~~~~---------------------------~~~~V~sv~~sp~~~~l  565 (721)
                      .+.+||+.+++.........         ...+.+.                           +...+..+.+.+++..+
T Consensus       147 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  226 (368)
T d1mdah_         147 AAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLV  226 (368)
T ss_dssp             CEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEE
T ss_pred             eEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEE
Confidence            99999998865311100000         0000000                           00112233333333222


Q ss_pred             EEEeCCCcEEEEECCCCcEEEEEcc-c----------cCCCeEEEEEcCCCCcEEEEEECC--------CcEEEEECCCC
Q 004969          566 LASGYSKNIALYDINSGRRLQVFAD-M----------HKEHINVVKFSNHSPSIFATSSFD--------QDVKLWDLRQK  626 (721)
Q Consensus       566 ls~g~Dg~IrlWDl~s~~~v~~l~~-~----------h~~~V~sI~fsPdg~~lLaSgs~D--------gtIrIWDlrs~  626 (721)
                      .  ..++.+.+++...+........ .          .......++++|++..++++...+        ..|.+||..++
T Consensus       227 ~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~  304 (368)
T d1mdah_         227 W--AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG  304 (368)
T ss_dssp             E--CBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC
T ss_pred             E--ecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCC
Confidence            2  2345566666665543332210 0          111233578888885444443322        35899999998


Q ss_pred             CceeEEEecCCCCeEEEEEecCCC-E-EEEEeCCCcEEEEEcC-CCccc
Q 004969          627 PIQPCYTASSSKGNVMVCFSPDDH-Y-LLGKGSGTSMFVQSLR-GDPFR  672 (721)
Q Consensus       627 ~~~~~~~~~~~~~~vsl~fSpdg~-~-Lasgs~Dg~I~VWDl~-g~~l~  672 (721)
                      +.  +..+.....+..++|+|||+ + ++++..++.|++||.. |+.++
T Consensus       305 ~~--~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~  351 (368)
T d1mdah_         305 QT--SGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS  351 (368)
T ss_dssp             CE--EECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred             cE--eEEecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEE
Confidence            64  33333222333799999997 3 4566678999999987 44433

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.74  E-value=1.1e-09  Score=106.41  Aligned_cols=46  Identities=30%  Similarity=0.522  Sum_probs=36.1

Q ss_pred             ccccccCCCCccc-------hHHHHHHHHHhCccccccCCCCcChHHHHhhhc
Q 004969          322 LKYISCHASPICF-------EKHYRDYMIASLPKLKFLDNLPIRKVDRERATI  367 (721)
Q Consensus       322 l~~~~~~~~Pi~~-------~~~yRe~~I~~Lp~Lk~Ldn~~I~k~ere~a~~  367 (721)
                      |+++....+|++.       ...||.+++..+|+|+.||+.+|...+|..|..
T Consensus       142 L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~~~I~~~er~~A~~  194 (198)
T d1m9la_         142 LEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVDEREQANV  194 (198)
T ss_dssp             CSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEESSGGGTTTTTTHHHH
T ss_pred             cceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeCCccCCHHHHHHHHH
Confidence            4555555555542       467999999999999999999999999887764

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.72  E-value=2.8e-07  Score=99.50  Aligned_cols=215  Identities=9%  Similarity=0.028  Sum_probs=139.4

Q ss_pred             EEEEEECCCeEEEEECCCCeEEEEeecC----------------------------CCCCCeEEEEEeeCCCCEEEE-Ee
Q 004969          468 LMVFGTLDGEIVVVNHENENIVSYIPSF----------------------------GAMNSVLGLCWLKKYPSKLIA-GS  518 (721)
Q Consensus       468 ~LasGs~DG~I~IWdl~tg~~i~~l~~~----------------------------~H~~~V~sl~fsp~d~~~LaS-gs  518 (721)
                      .+++|+.+|+|+||++.+++.++++...                            .|.......... ++|++|++ ..
T Consensus        13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gt-pDGr~lfV~d~   91 (441)
T d1qnia2          13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGR-YDGKYLFINDK   91 (441)
T ss_dssp             EEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTE-EEEEEEEEEET
T ss_pred             EEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceeccc-CCCCEEEEEcC
Confidence            3678889999999999999998887542                            122223333334 56777755 45


Q ss_pred             CCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEE--EEEeCCC-----------------cEEEEEC
Q 004969          519 DNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELF--LASGYSK-----------------NIALYDI  579 (721)
Q Consensus       519 ~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~l--ls~g~Dg-----------------~IrlWDl  579 (721)
                      .++.|.++|+.+.+..        ..+..........++++|+++..  +..+.+.                 .+..+|.
T Consensus        92 ~~~rVavIDl~t~k~~--------~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~  163 (441)
T d1qnia2          92 ANTRVARIRLDIMKTD--------KITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDA  163 (441)
T ss_dssp             TTTEEEEEETTTTEEE--------EEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEET
T ss_pred             CCCEEEEEECCCCcEe--------eEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecC
Confidence            7889999999986541        12233344567889999888753  3333221                 2356898


Q ss_pred             CCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECC-----------------------------------------CcE
Q 004969          580 NSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD-----------------------------------------QDV  618 (721)
Q Consensus       580 ~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~D-----------------------------------------gtI  618 (721)
                      .+.+....+.  -......+.|+|+| .++++++.+                                         +.+
T Consensus       164 ~t~~v~~qI~--v~~~p~~v~~spdG-k~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~  240 (441)
T d1qnia2         164 ETMDVAWQVI--VDGNLDNTDADYTG-KYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVP  240 (441)
T ss_dssp             TTCSEEEEEE--ESSCCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCC
T ss_pred             ccceeeEEEe--cCCCccceEECCCC-CEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcE
Confidence            8888887776  34567889999999 566555433                                         344


Q ss_pred             EEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEE-EeCCCcEEEEEcCC------Cccc------c---cccCeEEEE
Q 004969          619 KLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLG-KGSGTSMFVQSLRG------DPFR------D---FNMSILAAY  682 (721)
Q Consensus       619 rIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Las-gs~Dg~I~VWDl~g------~~l~------~---~~~~V~~v~  682 (721)
                      .+++......  +..++....+..+.++|||+|+++ +..++++.|||+..      ..+.      .   ........+
T Consensus       241 vvd~~~~~~v--~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~  318 (441)
T d1qnia2         241 VVDGRGESEF--TRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTT  318 (441)
T ss_dssp             EEECSSSCSS--EEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEE
T ss_pred             EEEcccCCce--EEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccce
Confidence            4554444322  444555555667899999998865 56789999999851      0010      0   012356678


Q ss_pred             ECCCCCcccccccEEEEecCC
Q 004969          683 TRPSSKSEIVKVNLLASTDHC  703 (721)
Q Consensus       683 fsP~~~~~~v~v~lLASgs~~  703 (721)
                      |.+++       +.+.|....
T Consensus       319 fd~~g-------~~yts~~~d  332 (441)
T d1qnia2         319 FDGRG-------NAYTTLFID  332 (441)
T ss_dssp             ECSSS-------EEEEEETTT
T ss_pred             ecCCc-------eEEEccccc
Confidence            99988       666665443

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.67  E-value=5.3e-06  Score=81.52  Aligned_cols=213  Identities=15%  Similarity=0.080  Sum_probs=127.5

Q ss_pred             eEEEEEeCCCCCEEEEEECCC---eEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEe-CCCeEEEEEcCCC
Q 004969          456 PRQFEYHPSISCLMVFGTLDG---EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS-DNGSLKLYDIRHM  531 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG---~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs-~DGtVrIWDi~~~  531 (721)
                      +..-+||| ||+.||......   .+.+.+..++......   .+........|+ +++..++... .++...++.....
T Consensus        41 ~~sP~wSP-DGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s-pdg~~i~~~~~~~~~~~~~~~~~~  115 (269)
T d2hqsa1          41 LMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVA---SFPRHNGAPAFS-PDGSKLAFALSKTGSLNLYVMDLA  115 (269)
T ss_dssp             EEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEEEE---CCSSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETT
T ss_pred             eeeeEECC-CCCEEEEEEeeccCcceeeeecccCceeEEe---eeecccccceec-CCCCeeeEeeecCCccceeecccc
Confidence            66789999 999998775543   4777777766654433   456778889998 6777666544 3444444433332


Q ss_pred             CCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-CCC--cEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcE
Q 004969          532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSK--NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSI  608 (721)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg--~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~l  608 (721)
                      ....        ..............+++.+..++..+ .++  .|.+.++..+.......  +........|+|++..+
T Consensus       116 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~~  185 (269)
T d2hqsa1         116 SGQI--------RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITW--EGSQNQDADVSSDGKFM  185 (269)
T ss_dssp             TCCE--------EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCC--SSSEEEEEEECTTSSEE
T ss_pred             cccc--------eeeeeccccccccccccccccceecccccCCceEeeeecccccceeeec--cccccccccccccccee
Confidence            2111        11111122234445666666666555 344  46666766654433322  56677788999999544


Q ss_pred             EEEEECCCcEEEE--ECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeC---CCcEEEEEcCCCccccc---ccCeEE
Q 004969          609 FATSSFDQDVKLW--DLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGS---GTSMFVQSLRGDPFRDF---NMSILA  680 (721)
Q Consensus       609 LaSgs~DgtIrIW--Dlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~---Dg~I~VWDl~g~~l~~~---~~~V~~  680 (721)
                      +.+....+...+|  |...+.   ..............|||||++|+-.+.   ...++++++.|...+..   .+.+..
T Consensus       186 ~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g~~~~  262 (269)
T d2hqsa1         186 VMVSSNGGQQHIAKQDLATGG---VQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKF  262 (269)
T ss_dssp             EEEEECSSCEEEEEEETTTCC---EEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEE
T ss_pred             EEEeecCCceeeeEeeccccc---ceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCCCCcEEe
Confidence            5555555555555  444432   222233333347899999999875543   34688999997654332   456777


Q ss_pred             EEECCC
Q 004969          681 AYTRPS  686 (721)
Q Consensus       681 v~fsP~  686 (721)
                      .+|+|-
T Consensus       263 p~WSP~  268 (269)
T d2hqsa1         263 PAWSPY  268 (269)
T ss_dssp             EEECCC
T ss_pred             EEeCCC
Confidence            889984

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.64  E-value=3.3e-06  Score=85.89  Aligned_cols=218  Identities=11%  Similarity=0.025  Sum_probs=148.7

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI  535 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~  535 (721)
                      +..++++| +|+++++...+++|..|+.. ++.....   .....+.+++|. ++++++++...++.+..|+........
T Consensus        30 ~e~iAv~p-dG~l~vt~~~~~~I~~i~p~-g~~~~~~---~~~~~~~gla~~-~dG~l~v~~~~~~~~~~~~~~~~~~~~  103 (302)
T d2p4oa1          30 LENLASAP-DGTIFVTNHEVGEIVSITPD-GNQQIHA---TVEGKVSGLAFT-SNGDLVATGWNADSIPVVSLVKSDGTV  103 (302)
T ss_dssp             EEEEEECT-TSCEEEEETTTTEEEEECTT-CCEEEEE---ECSSEEEEEEEC-TTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred             cCCEEECC-CCCEEEEeCCCCEEEEEeCC-CCEEEEE---cCCCCcceEEEc-CCCCeEEEecCCceEEEEEecccccce
Confidence            67899999 99999999999999999866 4433322   344678999998 688888888888888888876643321


Q ss_pred             cccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcc---------ccCCCeEEEEEcCCCC
Q 004969          536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD---------MHKEHINVVKFSNHSP  606 (721)
Q Consensus       536 ~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~---------~h~~~V~sI~fsPdg~  606 (721)
                      ..      ............+.+.+++..+++.+.++.+..+|...+........         .....+..+.+..+  
T Consensus       104 ~~------~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~--  175 (302)
T d2p4oa1         104 ET------LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGN--  175 (302)
T ss_dssp             EE------EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETT--
T ss_pred             ee------ccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCC--
Confidence            11      11112234578899988887777777788999999887764433321         11234566777543  


Q ss_pred             cEEEEEECCCcEEEEECCCCCceeE-EEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcc--cccc---cCeEE
Q 004969          607 SIFATSSFDQDVKLWDLRQKPIQPC-YTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPF--RDFN---MSILA  680 (721)
Q Consensus       607 ~lLaSgs~DgtIrIWDlrs~~~~~~-~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l--~~~~---~~V~~  680 (721)
                      .++++.+..+.|..++......... ........+-.++++++|.++++...++.|..++..|+..  ....   .....
T Consensus       176 ~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~  255 (302)
T d2p4oa1         176 FLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTA  255 (302)
T ss_dssp             EEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEE
T ss_pred             ceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceE
Confidence            5788888899999998876432211 1111122223689999999888888899999998876532  2211   25788


Q ss_pred             EEE---CCCC
Q 004969          681 AYT---RPSS  687 (721)
Q Consensus       681 v~f---sP~~  687 (721)
                      ++|   +|++
T Consensus       256 vafg~~~~D~  265 (302)
T d2p4oa1         256 VAFGQTEGDC  265 (302)
T ss_dssp             EEECCSTTTT
T ss_pred             EEEcCCCCCC
Confidence            999   6676

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.64  E-value=1.3e-05  Score=80.41  Aligned_cols=223  Identities=12%  Similarity=0.172  Sum_probs=150.6

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCC----CCCCeEEEEEeeCCCCEEEEE-eCCCeEEEEEcC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFG----AMNSVLGLCWLKKYPSKLIAG-SDNGSLKLYDIR  529 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~----H~~~V~sl~fsp~d~~~LaSg-s~DGtVrIWDi~  529 (721)
                      .|+.|+++| +++++++-...+.|++||.+ |+.+..+...+    .......+++.+..+..+++. +.++.|..++..
T Consensus        24 ~P~gvavd~-dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  101 (279)
T d1q7fa_          24 EPSGVAVNA-QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY  101 (279)
T ss_dssp             CEEEEEECT-TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred             CccEEEEcC-CCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc
Confidence            589999999 88988888888999999975 77777664322    122345666653344444443 345577777654


Q ss_pred             CCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEc-cccCCCeEEEEEcCCCCcE
Q 004969          530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFA-DMHKEHINVVKFSNHSPSI  608 (721)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~-~~h~~~V~sI~fsPdg~~l  608 (721)
                      ....  .       ............+++.+++..+++....+.+.++|.. ++.+..+. ..+......+++.+++ ++
T Consensus       102 g~~~--~-------~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g-~i  170 (279)
T d1q7fa_         102 GQFV--R-------KFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQ-EI  170 (279)
T ss_dssp             SCEE--E-------EECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSS-EE
T ss_pred             ccce--e-------ecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeecccccccccccceeeeccce-eE
Confidence            4211  0       0111122345788888888877777777888888865 66666663 2356778899999998 78


Q ss_pred             EEEEECCCcEEEEECCCCCceeEEEec--CC-CCeEEEEEecCCCEEEEEeC-CCcEEEEEcCCCccccc-----ccCeE
Q 004969          609 FATSSFDQDVKLWDLRQKPIQPCYTAS--SS-KGNVMVCFSPDDHYLLGKGS-GTSMFVQSLRGDPFRDF-----NMSIL  679 (721)
Q Consensus       609 LaSgs~DgtIrIWDlrs~~~~~~~~~~--~~-~~~vsl~fSpdg~~Lasgs~-Dg~I~VWDl~g~~l~~~-----~~~V~  679 (721)
                      +++....+.|++||.... .  +.++.  +. ..+..++++++|+.+++-+. ++.|.+|+..|..+..+     .....
T Consensus       171 ~v~d~~~~~V~~~d~~G~-~--~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~~~~~~~~~~~~~p~  247 (279)
T d1q7fa_         171 FISDNRAHCVKVFNYEGQ-Y--LRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCF  247 (279)
T ss_dssp             EEEEGGGTEEEEEETTCC-E--EEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEE
T ss_pred             EeeeccccceeeeecCCc-e--eeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCCCEEEEEeCCCCCCCEe
Confidence            888888999999997653 2  33332  22 23458999999998877554 44799999887654443     12577


Q ss_pred             EEEECCCCCcccccccEEEEe
Q 004969          680 AAYTRPSSKSEIVKVNLLAST  700 (721)
Q Consensus       680 ~v~fsP~~~~~~v~v~lLASg  700 (721)
                      .++..|++       .++++.
T Consensus       248 ~vav~~dG-------~l~V~~  261 (279)
T d1q7fa_         248 DVALMDDG-------SVVLAS  261 (279)
T ss_dssp             EEEEETTT-------EEEEEE
T ss_pred             EEEEeCCC-------cEEEEe
Confidence            88999998       666654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.59  E-value=4.2e-06  Score=83.25  Aligned_cols=223  Identities=9%  Similarity=0.083  Sum_probs=142.2

Q ss_pred             CeEEEEEeCCCCCEEEEE-ECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969          455 RPRQFEYHPSISCLMVFG-TLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasG-s~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~  533 (721)
                      .|+.|++++ ++++.++. +..+.|..++....... .... +-.....++++. +++..+++....+.+++++-.+...
T Consensus        15 ~P~~vavd~-dG~i~v~~~~~~~~i~~~~~~~~~~~-~~~~-~~~~~p~gvav~-~~g~i~v~d~~~~~i~~~~~~~~~~   90 (260)
T d1rwia_          15 SPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTT-VLPF-NGLYQPQGLAVD-GAGTVYVTDFNNRVVTLAAGSNNQT   90 (260)
T ss_dssp             CEEEEEECT-TCCEEEEECSSSCEEEEEC----CEE-ECCC-CSCCSCCCEEEC-TTCCEEEEETTTEEEEECTTCSCCE
T ss_pred             CCCEEEEcC-CCCEEEEEcCCCCEEEEEcCCCceEE-Eecc-CCccCceEEEEc-CCCCEEEeeeeeceeeeeeecccee
Confidence            589999999 88876665 45577777766533222 2221 222345678887 6778777777777777665444221


Q ss_pred             cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969          534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS  613 (721)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs  613 (721)
                                ...........++++.+++..+++-.....+..++........ +..........++++|++ +++++..
T Consensus        91 ----------~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~i~~~~~g-~~~v~~~  158 (260)
T d1rwia_          91 ----------VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV-LPFTGLNDPDGVAVDNSG-NVYVTDT  158 (260)
T ss_dssp             ----------ECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEE-CCCCSCCSCCEEEECTTC-CEEEEEG
T ss_pred             ----------eeeeeeeeecccccccccceeEeeccccccccccccccceeee-eeecccCCcceeeecCCC-CEeeecc
Confidence                      1112222446889998888776665556677777766543322 221123456789999998 7888888


Q ss_pred             CCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCccccc--c--cCeEEEEECCCCCc
Q 004969          614 FDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDF--N--MSILAAYTRPSSKS  689 (721)
Q Consensus       614 ~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~~~--~--~~V~~v~fsP~~~~  689 (721)
                      .++.|..+|...... .......-..+..++++++|.++++....+.|..++..+......  .  .....+++++++  
T Consensus       159 ~~~~i~~~d~~~~~~-~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g--  235 (260)
T d1rwia_         159 DNNRVVKLEAESNNQ-VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDR--  235 (260)
T ss_dssp             GGTEEEEECTTTCCE-EECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTC--
T ss_pred             cccccccccccccee-eeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCC--
Confidence            889999999876532 222223334556899999999888887788898888765432222  1  256789999998  


Q ss_pred             ccccccEEEEec
Q 004969          690 EIVKVNLLASTD  701 (721)
Q Consensus       690 ~~v~v~lLASgs  701 (721)
                           +++++-.
T Consensus       236 -----~l~vad~  242 (260)
T d1rwia_         236 -----TVYVADR  242 (260)
T ss_dssp             -----CEEEEEG
T ss_pred             -----CEEEEEC
Confidence                 6666533

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.59  E-value=7.8e-09  Score=92.55  Aligned_cols=72  Identities=21%  Similarity=0.364  Sum_probs=64.6

Q ss_pred             eEeecccccccccccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhcc
Q 004969          128 EVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRF  205 (721)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (721)
                      ++|+|++|+|..+.-++.+.+|.+|+|+ .|.|+.+++ .|..||+|+.|.+.+|+|..+    .++.++|+|++|.+
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls-~N~l~~lp~-~~~~l~~L~~L~l~~N~i~~l----~~~~~l~~L~~L~l   72 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLS-HNRLRALPP-ALAALRCLEVLQASDNALENV----DGVANLPRLQELLL   72 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECC-SSCCCCCCG-GGGGCTTCCEEECCSSCCCCC----GGGTTCSSCCEEEC
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECC-CCccCcchh-hhhhhhccccccccccccccc----CccccccccCeEEC
Confidence            5799999999999999999999999999 789999975 588999999999999999876    57889999988854

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.54  E-value=3e-07  Score=95.74  Aligned_cols=179  Identities=11%  Similarity=0.010  Sum_probs=114.3

Q ss_pred             eEEEEEeCCCCCEEEEEE-CCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          456 PRQFEYHPSISCLMVFGT-LDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs-~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      +..++|+| ||++++++. .++.|.+||+.+++....+...+  ...    +.|.....+++.+.||.+.+|+.......
T Consensus       126 p~~~a~Sp-DGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~--~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~  198 (368)
T d1mdah_         126 VHIIGNCA-SSACLLFFLFGSSAAAGLSVPGASDDQLTKSAS--CFH----IHPGAAATHYLGSCPASLAASDLAAAPAA  198 (368)
T ss_dssp             TTSEEECT-TSSCEEEEECSSSCEEEEEETTTEEEEEEECSS--CCC----CEEEETTEEECCCCTTSCEEEECCSSCCC
T ss_pred             ccceEECC-CCCEEEEEeCCCCeEEEEECCCCcEeEEeeccC--cce----EccCCCceEEEEcCCCCEEEEEecCCcee
Confidence            45689999 888887775 57999999999999988876422  211    11234456666777777777766533221


Q ss_pred             ccc---------------c----------c--c--------CcceeEec--------------cCCCeEEEEEecCCCEE
Q 004969          535 IRG---------------M----------H--Y--------GAGTVTFD--------------EFDQLTSVHVNSMDELF  565 (721)
Q Consensus       535 ~~~---------------~----------~--~--------~~~~~~~~--------------~~~~V~sv~~sp~~~~l  565 (721)
                      ...               .          .  +        ........              .......+++++++..+
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~  278 (368)
T d1mdah_         199 AGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGI  278 (368)
T ss_dssp             CEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEE
T ss_pred             eeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEE
Confidence            000               0          0  0        00000000              00112346777787777


Q ss_pred             EEEeCC---------CcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCc-EEEEEECCCcEEEEECCCCCceeEEEec
Q 004969          566 LASGYS---------KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPS-IFATSSFDQDVKLWDLRQKPIQPCYTAS  635 (721)
Q Consensus       566 ls~g~D---------g~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~-lLaSgs~DgtIrIWDlrs~~~~~~~~~~  635 (721)
                      ++...+         ..|.+||..+++.+..+.  +...+.+++|+|||.. +++++..|++|++||..+++.  +..++
T Consensus       279 ~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~--~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~--~~~i~  354 (368)
T d1mdah_         279 MILTVEHSRSCLAAAENTSSVTASVGQTSGPIS--NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQD--QSSVE  354 (368)
T ss_dssp             EEEEEECSSCTTSCEEEEEEEESSSCCEEECCE--EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEE--EEECC
T ss_pred             EEEecCCCceeecCCceEEEEECCCCcEeEEec--CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCE--EEEEE
Confidence            665321         359999999999888876  5567889999999943 467778899999999999854  44555


Q ss_pred             CCCCeEEEEE
Q 004969          636 SSKGNVMVCF  645 (721)
Q Consensus       636 ~~~~~vsl~f  645 (721)
                      ....+..+++
T Consensus       355 ~g~~P~~l~~  364 (368)
T d1mdah_         355 LDKGPESLSV  364 (368)
T ss_dssp             CCSCCCEEEC
T ss_pred             CCCCCCEEEE
Confidence            4444444443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.50  E-value=3.4e-05  Score=79.08  Aligned_cols=220  Identities=11%  Similarity=0.128  Sum_probs=141.1

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC----CeEEEEEcCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN----GSLKLYDIRH  530 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D----GtVrIWDi~~  530 (721)
                      .+..++|.+ ++++.++-...|.|..|+..++.....+.  .......++++. ++++++++...+    +.+...+..+
T Consensus        41 ~lEG~~~D~-~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~--~~~~~p~gla~~-~dG~l~va~~~~~~~~~~i~~~~~~~  116 (319)
T d2dg1a1          41 QLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFV--SHKANPAAIKIH-KDGRLFVCYLGDFKSTGGIFAATENG  116 (319)
T ss_dssp             CEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEE--CSSSSEEEEEEC-TTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred             CcEeCEECC-CCCEEEEECCCCEEEEEECCCCeEEEEEe--CCCCCeeEEEEC-CCCCEEEEecCCCccceeEEEEcCCC
Confidence            356789999 88988888889999999998776655554  344568899997 678877765432    2344444444


Q ss_pred             CCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC------CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCC
Q 004969          531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY------SKNIALYDINSGRRLQVFADMHKEHINVVKFSNH  604 (721)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~------Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPd  604 (721)
                      ....  .....     .........+++.++|...++...      .+.+..++...+. +..+.. .-...+.++|+|+
T Consensus       117 ~~~~--~~~~~-----~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~-~~~~pnGia~s~d  187 (319)
T d2dg1a1         117 DNLQ--DIIED-----LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQ-NISVANGIALSTD  187 (319)
T ss_dssp             CSCE--EEECS-----SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEE-EESSEEEEEECTT
T ss_pred             ceee--eeccC-----CCcccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEee-ccceeeeeeeccc
Confidence            3221  10000     011123678899898876665432      2345555554333 333322 3345688999999


Q ss_pred             CCcEEEEEECCCcEEEEECCCCCc-e-e-----EEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccccc--
Q 004969          605 SPSIFATSSFDQDVKLWDLRQKPI-Q-P-----CYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDFN--  675 (721)
Q Consensus       605 g~~lLaSgs~DgtIrIWDlrs~~~-~-~-----~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~~~~--  675 (721)
                      +..++++-+..+.|..||+..... . .     .........+-.++++++|++.++....+.|.+||-.|+.+..+.  
T Consensus       188 g~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G~~l~~i~~P  267 (319)
T d2dg1a1         188 EKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIP  267 (319)
T ss_dssp             SSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEEEECT
T ss_pred             cceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCCCcEEEEEeCC
Confidence            954667777789999999864311 1 1     111222233447999999999888888999999998887655442  


Q ss_pred             -------cCeEEEEECCCC
Q 004969          676 -------MSILAAYTRPSS  687 (721)
Q Consensus       676 -------~~V~~v~fsP~~  687 (721)
                             ..+.+++|.|..
T Consensus       268 ~~~~~~~~~~~~~~~~~~~  286 (319)
T d2dg1a1         268 GRDEGHMLRSTHPQFIPGT  286 (319)
T ss_dssp             TGGGTCSCBCCEEEECTTS
T ss_pred             CcCCCcCceeeeEEEeCCC
Confidence                   246788898876

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.50  E-value=3.7e-07  Score=98.42  Aligned_cols=142  Identities=10%  Similarity=0.042  Sum_probs=104.3

Q ss_pred             EEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeec---CCCCCCeEEEEEeeCCCCEEEEEeC---------CCeEEE
Q 004969          458 QFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPS---FGAMNSVLGLCWLKKYPSKLIAGSD---------NGSLKL  525 (721)
Q Consensus       458 ~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~---~~H~~~V~sl~fsp~d~~~LaSgs~---------DGtVrI  525 (721)
                      .+.|.+ ++.++.  ..||.|.+||+.+++....+..   ..|...|.++.|+ +++++|+.++.         ++.+.+
T Consensus        21 ~~~W~~-d~~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~S-pDg~~i~~~~~~~~~~r~s~~~~~~l   96 (470)
T d2bgra1          21 SLRWIS-DHEYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSIS-PDGQFILLEYNYVKQWRHSYTASYDI   96 (470)
T ss_dssp             CCEECS-SSEEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEEC-TTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             CCEeCC-CCEEEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEEC-CCCCEEEEEECCcceeeeccCceEEE
Confidence            467998 777765  4588999999999987765542   3456789999998 79999888753         578899


Q ss_pred             EEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccc--------------
Q 004969          526 YDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADM--------------  591 (721)
Q Consensus       526 WDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~--------------  591 (721)
                      ||+.+++..  .+        ..+...+..+.|+|+|..++.. .++.+.+|+..+++..+.....              
T Consensus        97 ~d~~~~~~~--~l--------~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~  165 (470)
T d2bgra1          97 YDLNKRQLI--TE--------ERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVY  165 (470)
T ss_dssp             EETTTTEEC--CS--------SCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHH
T ss_pred             EECCCCccc--cc--------ccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceee
Confidence            999986431  11        1234567899999999999885 4678999999988776544321              


Q ss_pred             ---cCCCeEEEEEcCCCCcEEEEEECC
Q 004969          592 ---HKEHINVVKFSNHSPSIFATSSFD  615 (721)
Q Consensus       592 ---h~~~V~sI~fsPdg~~lLaSgs~D  615 (721)
                         ..+....+.|+||| ..++....|
T Consensus       166 ~~~~~~~~~~~~wSPDG-k~ia~~~~d  191 (470)
T d2bgra1         166 EEEVFSAYSALWWSPNG-TFLAYAQFN  191 (470)
T ss_dssp             HHHTSSSSBCEEECTTS-SEEEEEEEE
T ss_pred             eeeecCCccccEECCCC-CccceeEec
Confidence               12234568899999 677776654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.47  E-value=3.4e-07  Score=98.67  Aligned_cols=146  Identities=11%  Similarity=0.124  Sum_probs=100.4

Q ss_pred             EEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC---------CCc
Q 004969          503 GLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY---------SKN  573 (721)
Q Consensus       503 sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~---------Dg~  573 (721)
                      .+.|. +++.++.  ..|+.+.+||+.+++.... +..+.   .-.+...|.++.|+|++..++.++.         ++.
T Consensus        21 ~~~W~-~d~~~~~--~~~~~~~~~~~~t~~~~~~-~~~~~---~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~   93 (470)
T d2bgra1          21 SLRWI-SDHEYLY--KQENNILVFNAEYGNSSVF-LENST---FDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS   93 (470)
T ss_dssp             CCEEC-SSSEEEE--ESSSCEEEEETTTCCEEEE-ECTTT---TTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred             CCEeC-CCCEEEE--EcCCcEEEEECCCCCEEEE-Echhh---hhhccCccceeEECCCCCEEEEEECCcceeeeccCce
Confidence            57797 5666654  3578899999999775311 11100   0112346899999999999998753         467


Q ss_pred             EEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCC----------------
Q 004969          574 IALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSS----------------  637 (721)
Q Consensus       574 IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~----------------  637 (721)
                      +.+||+.+++. ..+.. +...+..+.|+||| ..+|.. .++.+.+|+..++....+......                
T Consensus        94 ~~l~d~~~~~~-~~l~~-~~~~~~~~~~SPDG-~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~  169 (470)
T d2bgra1          94 YDIYDLNKRQL-ITEER-IPNNTQWVTWSPVG-HKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEV  169 (470)
T ss_dssp             EEEEETTTTEE-CCSSC-CCTTEEEEEECSST-TCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHT
T ss_pred             EEEEECCCCcc-ccccc-CCccccccccccCc-ceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeee
Confidence            89999998875 44554 88899999999999 667664 567899999998754332211100                


Q ss_pred             -CCeEEEEEecCCCEEEEEeCCC
Q 004969          638 -KGNVMVCFSPDDHYLLGKGSGT  659 (721)
Q Consensus       638 -~~~vsl~fSpdg~~Lasgs~Dg  659 (721)
                       .....+.|||||++|+....|.
T Consensus       170 ~~~~~~~~wSPDGk~ia~~~~d~  192 (470)
T d2bgra1         170 FSAYSALWWSPNGTFLAYAQFND  192 (470)
T ss_dssp             SSSSBCEEECTTSSEEEEEEEEC
T ss_pred             cCCccccEECCCCCccceeEecC
Confidence             0112477999999999876543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.38  E-value=9.8e-06  Score=80.46  Aligned_cols=196  Identities=9%  Similarity=0.083  Sum_probs=133.2

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS  534 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~  534 (721)
                      .+..+++++ ++.++++....+.|++++-.++..+...   .......++++. ++++++++-.....+..++.......
T Consensus        58 ~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~~~~~~---~~~~~p~~iavd-~~g~i~v~d~~~~~~~~~~~~~~~~~  132 (260)
T d1rwia_          58 QPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQTVLPF---DGLNYPEGLAVD-TQGAVYVADRGNNRVVKLAAGSKTQT  132 (260)
T ss_dssp             SCCCEEECT-TCCEEEEETTTEEEEECTTCSCCEECCC---CSCCSEEEEEEC-TTCCEEEEEGGGTEEEEECTTCSSCE
T ss_pred             CceEEEEcC-CCCEEEeeeeeceeeeeeeccceeeeee---eeeeeccccccc-ccceeEeeccccccccccccccceee
Confidence            477899999 8888888777777777765555444322   233567899987 57777777666777777776653321


Q ss_pred             ccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969          535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF  614 (721)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~  614 (721)
                      ....         .......++++++++..+++...++.|..+|....... .+..........+++.++| +++++...
T Consensus       133 ~~~~---------~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~-~~~~~~~~~p~gi~~d~~g-~l~vsd~~  201 (260)
T d1rwia_         133 VLPF---------TGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV-VLPFTDITAPWGIAVDEAG-TVYVTEHN  201 (260)
T ss_dssp             ECCC---------CSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEE-ECCCSSCCSEEEEEECTTC-CEEEEETT
T ss_pred             eeee---------cccCCcceeeecCCCCEeeeccccccccccccccceee-eeeccccCCCccceeeeee-eeeeeecC
Confidence            1111         11233478899898887777777888999998754433 3332255667899999998 78888888


Q ss_pred             CCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          615 DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       615 DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                      .+.|..++...... ......+-..+..++++++|..+++-..+++|+..+..
T Consensus       202 ~~~i~~~~~~~~~~-~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         202 TNQVVKLLAGSTTS-TVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             TTEEEEECTTCSCC-EECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             CCEEEEEeCCCCeE-EEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeCC
Confidence            88898888765432 12222223455689999999988876777777766655

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.31  E-value=0.00018  Score=73.51  Aligned_cols=223  Identities=10%  Similarity=0.062  Sum_probs=138.4

Q ss_pred             eEEEEEeCCCCCEEEEEEC-------CCeEEEEECCCCeEEEEeecC--CCCCCeEEEEEeeCCCCEEEEEeCCCeEEEE
Q 004969          456 PRQFEYHPSISCLMVFGTL-------DGEIVVVNHENENIVSYIPSF--GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLY  526 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~-------DG~I~IWdl~tg~~i~~l~~~--~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIW  526 (721)
                      +-.++|+| +|+++++...       +|+|..||..++.........  ...+.-..++|. ++++.++++...+.|...
T Consensus        20 ~EGpa~d~-dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~-~dg~~l~vad~~~~i~~~   97 (314)
T d1pjxa_          20 AEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCD-RDANQLFVADMRLGLLVV   97 (314)
T ss_dssp             CEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEEC-SSSSEEEEEETTTEEEEE
T ss_pred             CeEeEEeC-CCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEe-CCCCEEEEEECCCeEEEE
Confidence            56788999 8888776433       478999999887654433211  112346789997 677777777777778888


Q ss_pred             EcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC---------------CCcEEEEECCCCcEEEEEccc
Q 004969          527 DIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY---------------SKNIALYDINSGRRLQVFADM  591 (721)
Q Consensus       527 Di~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~---------------Dg~IrlWDl~s~~~v~~l~~~  591 (721)
                      +..+....+.......  ..+   ...+.+++.++|...++-..               .|.|..++.. ++......  
T Consensus        98 ~~~g~~~~~~~~~~~g--~~~---~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~--  169 (314)
T d1pjxa_          98 QTDGTFEEIAKKDSEG--RRM---QGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT--  169 (314)
T ss_dssp             ETTSCEEECCSBCTTS--CBC---BCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE--
T ss_pred             eCCCcEEEEEeccccc--ccc---CCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEeeC--
Confidence            8876432211110000  001   12477889888877776421               2344444443 44333332  


Q ss_pred             cCCCeEEEEEcCCCC----cEEEEEECCCcEEEEECCCCCcee----EEEecCCC--CeEEEEEecCCCEEEEEeCCCcE
Q 004969          592 HKEHINVVKFSNHSP----SIFATSSFDQDVKLWDLRQKPIQP----CYTASSSK--GNVMVCFSPDDHYLLGKGSGTSM  661 (721)
Q Consensus       592 h~~~V~sI~fsPdg~----~lLaSgs~DgtIrIWDlrs~~~~~----~~~~~~~~--~~vsl~fSpdg~~Lasgs~Dg~I  661 (721)
                      .-...+.++|+|++.    .++++-+..+.|..||+.......    ...+....  .+-.+++..+|+..++....+.|
T Consensus       170 ~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I  249 (314)
T d1pjxa_         170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHI  249 (314)
T ss_dssp             EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEE
T ss_pred             CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEE
Confidence            334567899998762    255666778889999876432211    12222222  23379999999998888888999


Q ss_pred             EEEEcCCCcc-ccc---ccCeEEEEECCCCC
Q 004969          662 FVQSLRGDPF-RDF---NMSILAAYTRPSSK  688 (721)
Q Consensus       662 ~VWDl~g~~l-~~~---~~~V~~v~fsP~~~  688 (721)
                      .+||..+..+ ...   ...+.+++|.|+++
T Consensus       250 ~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~  280 (314)
T d1pjxa_         250 EVFGPDGGQPKMRIRCPFEKPSNLHFKPQTK  280 (314)
T ss_dssp             EEECTTCBSCSEEEECSSSCEEEEEECTTSS
T ss_pred             EEEeCCCCEEEEEEECCCCCEEEEEEeCCCC
Confidence            9999874432 222   34678899999884

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.21  E-value=5.5e-05  Score=78.97  Aligned_cols=228  Identities=8%  Similarity=0.004  Sum_probs=126.7

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCC-CeEEEEeecCCCCCCeEEEEEeeCCCCE--EEEEe-CCCeEEEEEcCCC
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHEN-ENIVSYIPSFGAMNSVLGLCWLKKYPSK--LIAGS-DNGSLKLYDIRHM  531 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~t-g~~i~~l~~~~H~~~V~sl~fsp~d~~~--LaSgs-~DGtVrIWDi~~~  531 (721)
                      +.-|+|+| +++++.+... +.+..|.+.. +........ ........+.++ ++++.  ++++. ..++|..+.+...
T Consensus        42 ~s~la~s~-d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~-~~~~~p~~v~~~-~~~~~~~v~~a~~~~~~v~~~~~~~~  117 (365)
T d1jofa_          42 ISWMTFDH-ERKNIYGAAM-KKWSSFAVKSPTEIVHEASH-PIGGHPRANDAD-TNTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             CSEEEECT-TSSEEEEEEB-TEEEEEEEEETTEEEEEEEE-ECCSSGGGGCTT-SCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             CCEEEEcC-CCCEEEEEeC-CcEEEEEEeCCCCeEEEeee-cCCCCcEEEEEC-CCCCEEEEEEecCCCCEEEEeEccCC
Confidence            45699999 8888887764 5677777653 333222111 111223345555 45543  33322 2455655554332


Q ss_pred             CCccc--c------cccCcceeEeccCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCC-CcEE--EEEc-cccCCCeEE
Q 004969          532 PPSIR--G------MHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-SKNIALYDINS-GRRL--QVFA-DMHKEHINV  598 (721)
Q Consensus       532 ~~~~~--~------~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~-Dg~IrlWDl~s-~~~v--~~l~-~~h~~~V~s  598 (721)
                      .....  .      ..+............+.++.|+|++.+++++.. ...|.+|+... +...  .... .........
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~  197 (365)
T d1jofa_         118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW  197 (365)
T ss_dssp             CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE
T ss_pred             CCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEE
Confidence            11000  0      000011111222334789999999999998874 45788887654 3322  1221 124567899


Q ss_pred             EEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEE---ec--C------------CC-CeEEEEEecCCCEEEEEeC-C-
Q 004969          599 VKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYT---AS--S------------SK-GNVMVCFSPDDHYLLGKGS-G-  658 (721)
Q Consensus       599 I~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~---~~--~------------~~-~~vsl~fSpdg~~Lasgs~-D-  658 (721)
                      ++|+|++..+.++...+++|.+|++..+.......   ..  .            .. ....+.++|||++|+++.. + 
T Consensus       198 i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~  277 (365)
T d1jofa_         198 VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANK  277 (365)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESS
T ss_pred             EEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCC
Confidence            99999996555667778999999987654332221   10  0            00 1225899999999988743 2 


Q ss_pred             ----CcEEEEEcCCC-ccc---------ccccCeEEEEECC-CC
Q 004969          659 ----TSMFVQSLRGD-PFR---------DFNMSILAAYTRP-SS  687 (721)
Q Consensus       659 ----g~I~VWDl~g~-~l~---------~~~~~V~~v~fsP-~~  687 (721)
                          +.|..|++... .+.         ........++++| ++
T Consensus       278 ~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G  321 (365)
T d1jofa_         278 FELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD  321 (365)
T ss_dssp             TTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT
T ss_pred             CccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCC
Confidence                23677776521 111         0123456688888 67

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.20  E-value=0.00026  Score=68.90  Aligned_cols=193  Identities=12%  Similarity=0.025  Sum_probs=114.6

Q ss_pred             eEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCC-C--eEEEEEcCCCCCcccccccCcceeEeccCCCe
Q 004969          477 EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN-G--SLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQL  553 (721)
Q Consensus       477 ~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~D-G--tVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V  553 (721)
                      .|.|.|...+.......   +...+.+-+|+ |+|+.||-.... +  .+.+.+..++..          .....+....
T Consensus        20 ~l~i~d~dG~~~~~l~~---~~~~~~sP~wS-PDGk~IAf~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~   85 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHR---SPQPLMSPAWS-PDGSKLAYVTFESGRSALVIQTLANGAV----------RQVASFPRHN   85 (269)
T ss_dssp             EEEEEETTSCSCEEEEE---ESSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTTCCE----------EEEECCSSCE
T ss_pred             EEEEEcCCCCCcEEEec---CCCceeeeEEC-CCCCEEEEEEeeccCcceeeeecccCce----------eEEeeeeccc
Confidence            57777876444444433   35678899999 788888765433 2  355556555332          2223344566


Q ss_pred             EEEEEecCCCEEEEEeC-CCc--EEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcE--EEEECCCCCc
Q 004969          554 TSVHVNSMDELFLASGY-SKN--IALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDV--KLWDLRQKPI  628 (721)
Q Consensus       554 ~sv~~sp~~~~lls~g~-Dg~--IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtI--rIWDlrs~~~  628 (721)
                      ....|+|++..++.... ++.  +..+............  .........+++++...+++...+|..  .+.++..+..
T Consensus        86 ~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~  163 (269)
T d2hqsa1          86 GAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD--GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP  163 (269)
T ss_dssp             EEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCC--CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC
T ss_pred             ccceecCCCCeeeEeeecCCccceeecccccccceeeee--ccccccccccccccccceecccccCCceEeeeecccccc
Confidence            78899999999988764 333  3333333333333332  455556667888875566666666654  4455555432


Q ss_pred             eeEEEecCCCCeE-EEEEecCCCEEEEEeCCC---cEEEEEcCCCccc--ccccCeEEEEECCCCC
Q 004969          629 QPCYTASSSKGNV-MVCFSPDDHYLLGKGSGT---SMFVQSLRGDPFR--DFNMSILAAYTRPSSK  688 (721)
Q Consensus       629 ~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg---~I~VWDl~g~~l~--~~~~~V~~v~fsP~~~  688 (721)
                         .......... ...|+|+|++++..+.++   .+.+.+..+....  ..........|+|+|+
T Consensus       164 ---~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~  226 (269)
T d2hqsa1         164 ---QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGT  226 (269)
T ss_dssp             ---EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSS
T ss_pred             ---eeeecccccccccccccccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCC
Confidence               2222333333 789999999998776554   3444555433222  2244566778999994

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.14  E-value=0.0012  Score=66.52  Aligned_cols=224  Identities=13%  Similarity=0.135  Sum_probs=146.4

Q ss_pred             EEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccc
Q 004969          458 QFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRG  537 (721)
Q Consensus       458 ~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~  537 (721)
                      +..|++.++.+..+=-..+.|..||..+++.. .+..   ...+.++++. .++.+++ ++.+ -+.++|..+++.....
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~~---~~~~~~i~~~-~dg~l~v-a~~~-gl~~~d~~tg~~~~l~   94 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHAL---PFMGSALAKI-SDSKQLI-ASDD-GLFLRDTATGVLTLHA   94 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC---SSCEEEEEEE-ETTEEEE-EETT-EEEEEETTTCCEEEEE
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEEC---CCCcEEEEEe-cCCCEEE-EEeC-ccEEeecccceeeEEe
Confidence            35688856666666557789999999988654 3332   3467888886 5555555 4555 5778999886542111


Q ss_pred             -cccCcceeEeccCCCeEEEEEecCCCEEEEEeC----CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969          538 -MHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY----SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS  612 (721)
Q Consensus       538 -~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~----Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg  612 (721)
                       .....      ....++.+.+.++|...++...    .+.-.+|.+..++......  .-...+.++|++++..++++-
T Consensus        95 ~~~~~~------~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~--~~~~~Ng~~~s~d~~~l~~~d  166 (295)
T d2ghsa1          95 ELESDL------PGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA--DISIPNSICFSPDGTTGYFVD  166 (295)
T ss_dssp             CSSTTC------TTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE--EESSEEEEEECTTSCEEEEEE
T ss_pred             eeecCC------CcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEee--ccCCcceeeecCCCceEEEee
Confidence             10000      0123688889898887776543    2455677777776655554  334568899999996567777


Q ss_pred             ECCCcEEEEECCCCC------ceeEEEecCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCccccccc---CeEEEE
Q 004969          613 SFDQDVKLWDLRQKP------IQPCYTASSSKGNV-MVCFSPDDHYLLGKGSGTSMFVQSLRGDPFRDFNM---SILAAY  682 (721)
Q Consensus       613 s~DgtIrIWDlrs~~------~~~~~~~~~~~~~v-sl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l~~~~~---~V~~v~  682 (721)
                      +..+.|..|++....      ........+..+.. .+++..+|.+.++.-..+.|..||-.|+.+.....   .+.+++
T Consensus       167 t~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G~~~~~i~lP~~~~T~~~  246 (295)
T d2ghsa1         167 TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVPGKQTTCPA  246 (295)
T ss_dssp             TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEECSCSBEEEEE
T ss_pred             cccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCCCcEeeEecCCCCceEEEE
Confidence            788899999875321      11122233333333 79999999999888888899999988887666543   477888


Q ss_pred             EC-CCCCcccccccEEEEecC
Q 004969          683 TR-PSSKSEIVKVNLLASTDH  702 (721)
Q Consensus       683 fs-P~~~~~~v~v~lLASgs~  702 (721)
                      |- |+.+      .+++|...
T Consensus       247 FGG~d~~------~LyvTta~  261 (295)
T d2ghsa1         247 FIGPDAS------RLLVTSAR  261 (295)
T ss_dssp             EESTTSC------EEEEEEBC
T ss_pred             EeCCCCC------EEEEEECC
Confidence            84 6653      45555443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.14  E-value=3.9e-07  Score=81.17  Aligned_cols=98  Identities=24%  Similarity=0.423  Sum_probs=75.5

Q ss_pred             eEeeccCCchhhHHHHHhhcCCccceEeeccccccccc-ccccccceeeEEecccccccccccccccccccccchhcccc
Q 004969          103 RVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKL-NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCE  181 (721)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (721)
                      |+.||+++-+-  .+..+.+ =-.=+.|||++|+|+.+ .-++.+.+|++|+|+ .|.|+.++.  |..||+|+.|++.+
T Consensus         1 R~L~Ls~n~l~--~l~~l~~-l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~-~N~i~~l~~--~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLT--VLCHLEQ-LLLVTHLDLSHNRLRALPPALAALRCLEVLQAS-DNALENVDG--VANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCS--SCCCGGG-GTTCCEEECCSSCCCCCCGGGGGCTTCCEEECC-SSCCCCCGG--GTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCC--CCccccc-CCCCCEEECCCCccCcchhhhhhhhcccccccc-cccccccCc--cccccccCeEECCC
Confidence            67777776553  2222211 12357799999999999 457889999999999 789999964  88999999999999


Q ss_pred             ccchhhhHHHHHhhcCCcchhhccce
Q 004969          182 TRVGNLWTTIAALSKLPSLAELRFQN  207 (721)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (721)
                      |+|..+ ..+.++.++|+|+.|.+..
T Consensus        75 N~i~~~-~~~~~l~~~~~L~~L~l~~   99 (124)
T d1dcea3          75 NRLQQS-AAIQPLVSCPRLVLLNLQG   99 (124)
T ss_dssp             SCCCSS-STTGGGGGCTTCCEEECTT
T ss_pred             CccCCC-CCchhhcCCCCCCEEECCC
Confidence            999854 5567889999999998754

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.13  E-value=0.00035  Score=71.18  Aligned_cols=197  Identities=10%  Similarity=0.131  Sum_probs=121.3

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecC--CC-CCCeEEEEEeeCCCCEEEEEeC------------
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSF--GA-MNSVLGLCWLKKYPSKLIAGSD------------  519 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~--~H-~~~V~sl~fsp~d~~~LaSgs~------------  519 (721)
                      .+..++|.+ ++++++++...+.|..++...+.. ..+...  +. -...+.+++. +++++.++-..            
T Consensus        72 ~P~Gl~~~~-dg~~l~vad~~~~i~~~~~~g~~~-~~~~~~~~g~~~~~pndl~~d-~~G~lyvtd~~~~~~~~~~~~~~  148 (314)
T d1pjxa_          72 IPAGCQCDR-DANQLFVADMRLGLLVVQTDGTFE-EIAKKDSEGRRMQGCNDCAFD-YEGNLWITAPAGEVAPADYTRSM  148 (314)
T ss_dssp             CEEEEEECS-SSSEEEEEETTTEEEEEETTSCEE-ECCSBCTTSCBCBCCCEEEEC-TTSCEEEEECBCBCTTSCCCBTT
T ss_pred             cceeEEEeC-CCCEEEEEECCCeEEEEeCCCcEE-EEEeccccccccCCCcEEEEC-CCCCEEEecCccCccccccccee
Confidence            478899999 888888887777899999875433 222211  11 1235678886 56776666322            


Q ss_pred             ---CCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCC----EEEEE-eCCCcEEEEECCCCcEEE-----
Q 004969          520 ---NGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDE----LFLAS-GYSKNIALYDINSGRRLQ-----  586 (721)
Q Consensus       520 ---DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~----~lls~-g~Dg~IrlWDl~s~~~v~-----  586 (721)
                         +|.|..++... +.          .........-+.++|+++++    .++++ +..+.|..||+.....+.     
T Consensus       149 ~~~~G~v~~~~~dg-~~----------~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~  217 (314)
T d1pjxa_         149 QEKFGSIYCFTTDG-QM----------IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVW  217 (314)
T ss_dssp             SSSCEEEEEECTTS-CE----------EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEE
T ss_pred             ccCCceEEEEeecC-ce----------eEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEE
Confidence               12333333221 10          01111112236788988765    45544 457889999876432222     


Q ss_pred             -EEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEE-EEEeCCCcEEEE
Q 004969          587 -VFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYL-LGKGSGTSMFVQ  664 (721)
Q Consensus       587 -~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~L-asgs~Dg~I~VW  664 (721)
                       .+.+.+......+++..+| ++.++....+.|.+||...+........+ ...+.+++|.|+++.| ++.+.+|.|+..
T Consensus       218 ~~~~~~~~~~pdGiavD~~G-nlyVa~~~~g~I~~~dp~~g~~~~~i~~p-~~~~t~~afg~d~~~lyVt~~~~g~i~~~  295 (314)
T d1pjxa_         218 GHIPGTHEGGADGMDFDEDN-NLLVANWGSSHIEVFGPDGGQPKMRIRCP-FEKPSNLHFKPQTKTIFVTEHENNAVWKF  295 (314)
T ss_dssp             EECCCCSSCEEEEEEEBTTC-CEEEEEETTTEEEEECTTCBSCSEEEECS-SSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             EEccccccccceeeEEecCC-cEEEEEcCCCEEEEEeCCCCEEEEEEECC-CCCEEEEEEeCCCCEEEEEECCCCcEEEE
Confidence             2222223346789999999 78888888899999999877543333332 2445589999999855 555667888888


Q ss_pred             EcC
Q 004969          665 SLR  667 (721)
Q Consensus       665 Dl~  667 (721)
                      ++.
T Consensus       296 ~~~  298 (314)
T d1pjxa_         296 EWQ  298 (314)
T ss_dssp             ECS
T ss_pred             ECC
Confidence            776

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.03  E-value=0.00014  Score=75.79  Aligned_cols=172  Identities=9%  Similarity=0.020  Sum_probs=105.1

Q ss_pred             CeEEEEEeCCCCCEEEEEEC-CCeEEEEECCC-CeEE--EEeecCCCCCCeEEEEEeeCCCCEE-EEEeCCCeEEEEEcC
Q 004969          455 RPRQFEYHPSISCLMVFGTL-DGEIVVVNHEN-ENIV--SYIPSFGAMNSVLGLCWLKKYPSKL-IAGSDNGSLKLYDIR  529 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~-DG~I~IWdl~t-g~~i--~~l~~~~H~~~V~sl~fsp~d~~~L-aSgs~DGtVrIWDi~  529 (721)
                      .+.++.|+| ++++++++.. ...|.+|+... +...  ..............++|+ ++++++ ++.-.+++|.+|++.
T Consensus       146 h~h~v~~sP-dG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~-pdg~~~yv~~e~~~~V~v~~~~  223 (365)
T d1jofa_         146 GIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMH-PTGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             CEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEEC-TTSSEEEEEETTTTEEEEEEEC
T ss_pred             cceEEEECC-CCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEEC-CCCceEEEeccCCCEEEEEEec
Confidence            478999999 8998877764 45788887653 3322  222222344678999998 677766 555578999999997


Q ss_pred             CCCCcccccccC----------cceeEeccCCCeEEEEEecCCCEEEEEeC-C-----CcEEEEECCCCcEEEE---Ec-
Q 004969          530 HMPPSIRGMHYG----------AGTVTFDEFDQLTSVHVNSMDELFLASGY-S-----KNIALYDINSGRRLQV---FA-  589 (721)
Q Consensus       530 ~~~~~~~~~~~~----------~~~~~~~~~~~V~sv~~sp~~~~lls~g~-D-----g~IrlWDl~s~~~v~~---l~-  589 (721)
                      ............          ..............+.++|++..++++.. +     +.|..|++.....+..   +. 
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~  303 (365)
T d1jofa_         224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP  303 (365)
T ss_dssp             TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeE
Confidence            754321100000          00001111223567899999999988753 2     3477787765322221   11 


Q ss_pred             -cccCCCeEEEEEcC-CCCcEEEEEECCCcEEEEECCCCCc
Q 004969          590 -DMHKEHINVVKFSN-HSPSIFATSSFDQDVKLWDLRQKPI  628 (721)
Q Consensus       590 -~~h~~~V~sI~fsP-dg~~lLaSgs~DgtIrIWDlrs~~~  628 (721)
                       .........++++| +|..++++...++.|.+|++.....
T Consensus       304 ~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~l  344 (365)
T d1jofa_         304 TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFL  344 (365)
T ss_dssp             CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEE
T ss_pred             EEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCcC
Confidence             11344567899998 6633445556789999999876543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.02  E-value=6.5e-05  Score=75.92  Aligned_cols=195  Identities=15%  Similarity=0.136  Sum_probs=124.3

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCC--eEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENE--NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP  532 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg--~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~  532 (721)
                      .+.+++|+| ++++++++..++.+.+|+....  .... +...........+.+. ++++++++.+.++.+..++...+.
T Consensus        69 ~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~n~i~~~-~~g~~~v~~~~~~~i~~~~~~~~~  145 (302)
T d2p4oa1          69 KVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVET-LLTLPDAIFLNGITPL-SDTQYLTADSYRGAIWLIDVVQPS  145 (302)
T ss_dssp             EEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEE-EEECTTCSCEEEEEES-SSSEEEEEETTTTEEEEEETTTTE
T ss_pred             CcceEEEcC-CCCeEEEecCCceEEEEEecccccceee-ccccCCccccceeEEc-cCCCEEeeccccccceeeeccCCc
Confidence            488999999 8999999999998888876532  2222 2222345678899987 678888888888888888887654


Q ss_pred             CcccccccCcce-eEeccCCCeEEEEEecCCCEEEEE-eCCCcEEEEECCCCcEE---EEEccccCCCeEEEEEcCCCCc
Q 004969          533 PSIRGMHYGAGT-VTFDEFDQLTSVHVNSMDELFLAS-GYSKNIALYDINSGRRL---QVFADMHKEHINVVKFSNHSPS  607 (721)
Q Consensus       533 ~~~~~~~~~~~~-~~~~~~~~V~sv~~sp~~~~lls~-g~Dg~IrlWDl~s~~~v---~~l~~~h~~~V~sI~fsPdg~~  607 (721)
                      ..+......... ...........+.+  +++.++.+ +..+.|..++.......   ..+.  .......+++.++| +
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~ngi~~--~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~pdgia~d~dG-~  220 (302)
T d2p4oa1         146 GSIWLEHPMLARSNSESVFPAANGLKR--FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV--EQTNIDDFAFDVEG-N  220 (302)
T ss_dssp             EEEEEECGGGSCSSTTCCSCSEEEEEE--ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE--ESCCCSSEEEBTTC-C
T ss_pred             ceeEecCCccceeeccCcccccccccc--cCCceeeecCCCCeEEecccccccccccccccc--CCCCCcceEECCCC-C
Confidence            321111100000 00011123456666  34455544 46788998988754322   1222  23446679999999 7


Q ss_pred             EEEEEECCCcEEEEECCCCCceeEEEec-CCCCeEEEEE---ecCCCEEEEEeCC
Q 004969          608 IFATSSFDQDVKLWDLRQKPIQPCYTAS-SSKGNVMVCF---SPDDHYLLGKGSG  658 (721)
Q Consensus       608 lLaSgs~DgtIrIWDlrs~~~~~~~~~~-~~~~~vsl~f---Spdg~~Lasgs~D  658 (721)
                      ++++...++.|..|+.... ...+.... +...+.+++|   ++|++.|+.++..
T Consensus       221 l~va~~~~~~V~~i~p~G~-~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         221 LYGATHIYNSVVRIAPDRS-TTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             EEEECBTTCCEEEECTTCC-EEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             EEEEEcCCCcEEEECCCCC-EEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            8888888999999987653 22233332 3445668999   6788888776644

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.98  E-value=0.0011  Score=65.80  Aligned_cols=198  Identities=10%  Similarity=0.141  Sum_probs=131.4

Q ss_pred             CeEEEEEeCCCCCEEEEE-ECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCC
Q 004969          455 RPRQFEYHPSISCLMVFG-TLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP  533 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasG-s~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~  533 (721)
                      .+..+++.+..+..+++. +.++.|.+++.. |.....+.. .......+++.. .++..+++....+.+.+++..... 
T Consensus        71 ~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~-~~~~~p~~~avd-~~G~i~v~~~~~~~~~~~~~~g~~-  146 (279)
T d1q7fa_          71 YPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-GQFVRKFGA-TILQHPRGVTVD-NKGRIIVVECKVMRVIIFDQNGNV-  146 (279)
T ss_dssp             SEEEEEEETTTTEEEEEECGGGCEEEEECTT-SCEEEEECT-TTCSCEEEEEEC-TTSCEEEEETTTTEEEEECTTSCE-
T ss_pred             ccccccccccccccceeccCCcccccccccc-ccceeecCC-Ccccccceeccc-cCCcEEEEeeccceeeEeccCCce-
Confidence            577788877445555443 345677777764 666666643 345667788886 677777777777788888765421 


Q ss_pred             cccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEcc-ccCCCeEEEEEcCCCCcEEEEE
Q 004969          534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD-MHKEHINVVKFSNHSPSIFATS  612 (721)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~-~h~~~V~sI~fsPdg~~lLaSg  612 (721)
                       +....      ...+......+++.+++..+++....+.|++||.. ++.+.++.. +.......|++.|+| +++++-
T Consensus       147 -~~~~g------~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G-~i~Vad  217 (279)
T d1q7fa_         147 -LHKFG------CSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNG-EILIAD  217 (279)
T ss_dssp             -EEEEE------CTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTC-CEEEEE
T ss_pred             -eeccc------ccccccccceeeeccceeEEeeeccccceeeeecC-CceeeeecccccccCCcccccccCC-eEEEEE
Confidence             11100      01223456788888887777776678899999975 677777742 245568899999999 677765


Q ss_pred             EC-CCcEEEEECCCCCceeEEEecCC-CCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          613 SF-DQDVKLWDLRQKPIQPCYTASSS-KGNVMVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       613 s~-DgtIrIWDlrs~~~~~~~~~~~~-~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                      .. ++.|.+|+.. ++....+..... ..+..+++.|+|.+++ ++.++.|++|...
T Consensus       218 ~~~~~~v~~f~~~-G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~  272 (279)
T d1q7fa_         218 NHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYV  272 (279)
T ss_dssp             CSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECS
T ss_pred             CCCCcEEEEECCC-CCEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEee
Confidence            44 4579999854 544333332322 2355899999997655 5678999999876

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=5.9e-07  Score=83.69  Aligned_cols=97  Identities=26%  Similarity=0.368  Sum_probs=58.3

Q ss_pred             cccceEeeccCCchhhHHHHHhhcCCccceEeeccccccccccccc-ccceeeEEeccccccccccc--ccccccccccc
Q 004969           99 DQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIG-EFKRIHTLNLDYSTSLTSFK--EDCFSCMPNLI  175 (721)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~  175 (721)
                      |...+..||..  |..+  .+|...+.-+ .+++.++.+..+..+. .+++|++|+|. .|.|+.++  ..+|.++|+|+
T Consensus        21 ~~~~~~Ldls~--l~~~--~~l~~~~~~~-~l~~~~~~~~~l~~~~~~~~~L~~L~Ls-~N~i~~l~~~~~~~~~l~~L~   94 (162)
T d1koha1          21 DGSQQALDLKG--LRSD--PDLVAQNIDV-VLNRRSSMAATLRIIEENIPELLSLNLS-NNRLYRLDDMSSIVQKAPNLK   94 (162)
T ss_dssp             CSSSCCBCCCC--CSSC--TTTTTTTCCC-CTTSHHHHHHHHHHHHHHCTTCCCCCCC-SSCCCCCSGGGTHHHHSTTCC
T ss_pred             chhhCeeeccc--CCCC--chhhhccchh-hcchhhhHhhhhHHHHHhCCCCCEeeCC-CccccCCchhHHHHhhCCccc
Confidence            44556666665  3321  2333333333 2444455555554443 57888888888 77888876  47788888888


Q ss_pred             hhccccccchhhhHHHHHhhcCCcchhh
Q 004969          176 CLSMCETRVGNLWTTIAALSKLPSLAEL  203 (721)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (721)
                      .|++.+|+|.++ ..+..+..+ .|++|
T Consensus        95 ~L~Ls~N~i~~l-~~l~~l~~~-~L~~L  120 (162)
T d1koha1          95 ILNLSGNELKSE-RELDKIKGL-KLEEL  120 (162)
T ss_dssp             CCCCTTSCCCCG-GGHHHHTTC-CCSSC
T ss_pred             ccccccCccccc-hhhhhhhcc-cccee
Confidence            888888888865 334443332 34444

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.86  E-value=2.7e-07  Score=89.01  Aligned_cols=59  Identities=19%  Similarity=0.260  Sum_probs=34.8

Q ss_pred             ceEeecccccccccccccccceeeEEecccccccccccc-cccccccccchhccccccchh
Q 004969          127 CEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKE-DCFSCMPNLICLSMCETRVGN  186 (721)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  186 (721)
                      =+.|+|++|++..+.-++.+++|.+|+|. .|.|+.+.+ +.|..||+|+.|+|.+|.+.+
T Consensus        95 L~~L~l~~N~i~~l~~~~~l~~L~~L~L~-~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_          95 LEELWISYNQIASLSGIEKLVNLRVLYMS-NNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             CCEEECSEEECCCHHHHHHHHHSSEEEES-EEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             ccccccccccccccccccccccccccccc-cchhccccccccccCCCccceeecCCCcccc
Confidence            34566666666666555566666666666 555665554 456666666666666665543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=3.3e-06  Score=78.50  Aligned_cols=129  Identities=18%  Similarity=0.223  Sum_probs=92.5

Q ss_pred             cCCCcceeeEeecCCccccchHHHHHHHHHhcccceEeeccCCchhhHHHHHhhcCCccceEeeccccccccccc--ccc
Q 004969           68 IGATEIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNM--IGE  145 (721)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  145 (721)
                      ++...+..+|+.+-.-..+....      +.-.+|+.+||.++.+..  +..+ ..=..=+.|+|++|+|..+.-  ++.
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~~~~------~~l~~L~~L~Ls~N~i~~--l~~~-~~l~~L~~L~ls~N~i~~l~~~~~~~   85 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIENLG------ATLDQFDAIDFSDNEIRK--LDGF-PLLRRLKTLLVNNNRICRIGEGLDQA   85 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGG------GGTTCCSEEECCSSCCCE--ECCC-CCCSSCCEEECCSSCCCEECSCHHHH
T ss_pred             cCcCcCcEEECCCCCCCccCccc------cccccCCEEECCCCCCCc--cCCc-ccCcchhhhhcccccccCCCcccccc
Confidence            44556677787654444443211      223579999999986542  1111 111245789999999999853  668


Q ss_pred             cceeeEEecccccccccccc-cccccccccchhccccccchhhhH-HHHHhhcCCcchhhccc
Q 004969          146 FKRIHTLNLDYSTSLTSFKE-DCFSCMPNLICLSMCETRVGNLWT-TIAALSKLPSLAELRFQ  206 (721)
Q Consensus       146 ~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  206 (721)
                      +++|++|+|+ .|.|+.+.+ ++|..||+|+.|++.+|.|.++=. ..-++..||+|+.|.++
T Consensus        86 l~~L~~L~L~-~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          86 LPDLTELILT-NNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             CTTCCEEECC-SCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             ccccccceec-cccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCC
Confidence            9999999999 889999987 899999999999999999976511 12357889999998654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.67  E-value=0.013  Score=59.10  Aligned_cols=189  Identities=8%  Similarity=0.071  Sum_probs=114.4

Q ss_pred             CeEEEEEeCCCCCEEEEEEC----CCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeC------CCeEE
Q 004969          455 RPRQFEYHPSISCLMVFGTL----DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD------NGSLK  524 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~----DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~------DGtVr  524 (721)
                      .+..++++| +|+++++...    .+.|...+..++..........-......+++. +++++.++...      .+.+.
T Consensus        83 ~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d-~~G~l~vtd~~~~~~~~~g~v~  160 (319)
T d2dg1a1          83 NPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFD-SKGGFYFTDFRGYSTNPLGGVY  160 (319)
T ss_dssp             SEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEEC-TTSCEEEEECCCBTTBCCEEEE
T ss_pred             CeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEE-eccceeecccccccccCcceeE
Confidence            478899999 8888877643    334555566655554444322223457788886 67776665432      12344


Q ss_pred             EEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCC-cEEEEE------ccccCCCe
Q 004969          525 LYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSG-RRLQVF------ADMHKEHI  596 (721)
Q Consensus       525 IWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~-~~v~~l------~~~h~~~V  596 (721)
                      .++......  .        .........+.++|+++++.++.+. ..+.|+.||+... ......      ........
T Consensus       161 ~~~~dg~~~--~--------~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~P  230 (319)
T d2dg1a1         161 YVSPDFRTV--T--------PIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGP  230 (319)
T ss_dssp             EECTTSCCE--E--------EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEE
T ss_pred             EEeccccee--E--------EEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccce
Confidence            444333211  0        0111122347899999998776665 5789999998642 211111      11122346


Q ss_pred             EEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCC----C-CeEEEEEecCCCEEEEEeC
Q 004969          597 NVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSS----K-GNVMVCFSPDDHYLLGKGS  657 (721)
Q Consensus       597 ~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~----~-~~vsl~fSpdg~~Lasgs~  657 (721)
                      ..+++.++| ++.++....+.|.+||. .++......++..    . ...+++|.+++..+++...
T Consensus       231 dGl~vD~~G-~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         231 DSCCIDSDD-NLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             EEEEEBTTC-CEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             eeeeEcCCC-CEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            789999999 78888889999999996 4554444444431    2 2338999998877766543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.59  E-value=1.3e-05  Score=78.00  Aligned_cols=72  Identities=15%  Similarity=0.401  Sum_probs=53.9

Q ss_pred             eEeecccccccccccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhccc
Q 004969          128 EVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQ  206 (721)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (721)
                      +.|+++.|.+....-++.+++|++|+|. +|.|+++..  |..||+|+.|.|++|+|..+    .+|+.|++|++|++.
T Consensus       154 ~~L~l~~n~~~~~~~l~~l~~L~~L~Ls-~n~l~~l~~--l~~l~~L~~L~Ls~N~lt~i----~~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         154 QYLSIGNAQVSDLTPLANLSKLTTLKAD-DNKISDISP--LASLPNLIEVHLKNNQISDV----SPLANTSNLFIVTLT  225 (227)
T ss_dssp             CEEECCSSCCCCCGGGTTCTTCCEEECC-SSCCCCCGG--GGGCTTCCEEECTTSCCCBC----GGGTTCTTCCEEEEE
T ss_pred             ccccccccccccchhhcccccceecccC-CCccCCChh--hcCCCCCCEEECcCCcCCCC----cccccCCCCCEEEee
Confidence            4577777777777777778888888888 457887754  77788888888888877655    678888888877664

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.53  E-value=2.3e-05  Score=74.65  Aligned_cols=99  Identities=18%  Similarity=0.301  Sum_probs=68.3

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhcc
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM  179 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (721)
                      .+|+.++|..+.+..  +..+. .--.-+.|+++.+++..+..++.+++|..|.|+ ++.|+.+  +.|..+++|+.|.+
T Consensus        84 ~~L~~L~l~~n~~~~--~~~l~-~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~-~n~l~~~--~~l~~~~~L~~L~l  157 (199)
T d2omxa2          84 TKLVDILMNNNQIAD--ITPLA-NLTNLTGLTLFNNQITDIDPLKNLTNLNRLELS-SNTISDI--SALSGLTSLQQLNF  157 (199)
T ss_dssp             TTCCEEECCSSCCCC--CGGGT-TCTTCSEEECCSSCCCCCGGGTTCTTCSEEECC-SSCCCCC--GGGTTCTTCSEEEC
T ss_pred             ccccccccccccccc--ccccc-cccccccccccccccccccccchhhhhHHhhhh-hhhhccc--cccccccccccccc
Confidence            368888887765432  11121 122345677888877777777778888888887 6677776  35777888888888


Q ss_pred             ccccchhhhHHHHHhhcCCcchhhcccee
Q 004969          180 CETRVGNLWTTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (721)
                      .+|++.++    .++.+|++|++|.++.|
T Consensus       158 ~~n~l~~l----~~l~~l~~L~~L~ls~N  182 (199)
T d2omxa2         158 SSNQVTDL----KPLANLTTLERLDISSN  182 (199)
T ss_dssp             CSSCCCCC----GGGTTCTTCCEEECCSS
T ss_pred             ccccccCC----ccccCCCCCCEEECCCC
Confidence            88877665    67778888888877765

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.51  E-value=7e-06  Score=77.98  Aligned_cols=75  Identities=17%  Similarity=0.327  Sum_probs=39.7

Q ss_pred             eEeeccccccccc--ccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhcc
Q 004969          128 EVLNLRSSRFRKL--NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRF  205 (721)
Q Consensus       128 ~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (721)
                      +.|+|++|+++.+  +.++.+.+|++|.|+ .|.|+.++.+-|..+|+|+.|.|.+|++..+=  -.++..+++|++|.+
T Consensus        57 ~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls-~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~--~~~f~~l~~L~~l~L  133 (192)
T d1w8aa_          57 VKLELKRNQLTGIEPNAFEGASHIQELQLG-ENKIKEISNKMFLGLHQLKTLNLYDNQISCVM--PGSFEHLNSLTSLNL  133 (192)
T ss_dssp             CEEECCSSCCCCBCTTTTTTCTTCCEEECC-SCCCCEECSSSSTTCTTCCEEECCSSCCCEEC--TTSSTTCTTCCEEEC
T ss_pred             eeeeccccccccccccccccccccceeeec-cccccccCHHHHhCCCcccccccCCccccccC--HHHhcCCcccccccc
Confidence            4455555555544  344445555566665 55566665555666666666666665555431  123445555555543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.51  E-value=1.9e-05  Score=76.11  Aligned_cols=77  Identities=22%  Similarity=0.278  Sum_probs=65.9

Q ss_pred             cceEeecccccccccccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhcc
Q 004969          126 MCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRF  205 (721)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (721)
                      +.+.|+++++.+..+.-+..|++|.+|+|+ .+.|+.+..  ++.|++|+.|.+.+|+|.++    .++..+++|++|..
T Consensus        47 ~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~-~n~i~~l~~--~~~l~~L~~L~l~~n~i~~l----~~l~~l~~L~~L~l  119 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQGIQYLPNVTKLFLN-GNKLTDIKP--LANLKNLGWLFLDENKVKDL----SSLKDLKKLKSLSL  119 (210)
T ss_dssp             TCCEEECTTSCCCCCTTGGGCTTCCEEECC-SSCCCCCGG--GTTCTTCCEEECCSSCCCCG----GGGTTCTTCCEEEC
T ss_pred             CccEEECcCCCCCCchhHhhCCCCCEEeCC-CccccCccc--cccCcccccccccccccccc----cccccccccccccc
Confidence            467899999999999888899999999999 778998863  67899999999999998865    67899999999987


Q ss_pred             ceee
Q 004969          206 QNWL  209 (721)
Q Consensus       206 ~~~~  209 (721)
                      +.|-
T Consensus       120 ~~~~  123 (210)
T d1h6ta2         120 EHNG  123 (210)
T ss_dssp             TTSC
T ss_pred             cccc
Confidence            6653

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.51  E-value=1.8e-05  Score=75.48  Aligned_cols=76  Identities=14%  Similarity=0.305  Sum_probs=61.7

Q ss_pred             cceEeecccccccccccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhcc
Q 004969          126 MCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRF  205 (721)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (721)
                      ..+.|+|+++.|..|.-+..|++|.+|+|+ +|.|+.+..  |..||+|+.|.+.+|++..+    .++..+++|++|.+
T Consensus        41 ~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls-~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~----~~l~~l~~L~~L~l  113 (199)
T d2omxa2          41 QVTTLQADRLGIKSIDGVEYLNNLTQINFS-NNQLTDITP--LKNLTKLVDILMNNNQIADI----TPLANLTNLTGLTL  113 (199)
T ss_dssp             TCCEEECTTSCCCCCTTGGGCTTCCEEECC-SSCCCCCGG--GTTCTTCCEEECCSSCCCCC----GGGTTCTTCSEEEC
T ss_pred             CCCEEECCCCCCCCccccccCCCcCcCccc-cccccCccc--ccCCcccccccccccccccc----cccccccccccccc
Confidence            456788888888888888888999999998 668888864  88889999999988887655    67888888888876


Q ss_pred             cee
Q 004969          206 QNW  208 (721)
Q Consensus       206 ~~~  208 (721)
                      ..|
T Consensus       114 ~~~  116 (199)
T d2omxa2         114 FNN  116 (199)
T ss_dssp             CSS
T ss_pred             ccc
Confidence            543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.45  E-value=2.4e-05  Score=81.15  Aligned_cols=75  Identities=13%  Similarity=0.269  Sum_probs=56.0

Q ss_pred             CccceEeecccccccccccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhh
Q 004969          124 GLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAEL  203 (721)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (721)
                      .-.++.|+|++|+|..+.-++.|++|.+|.|. +|+|+.++  .|..||+|+.|.+.+|++..+    .+|.+|++|++|
T Consensus       306 ~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~-~n~l~~l~--~l~~l~~L~~L~l~~N~l~~l----~~l~~l~~L~~L  378 (384)
T d2omza2         306 LKNLTYLTLYFNNISDISPVSSLTKLQRLFFA-NNKVSDVS--SLANLTNINWLSAGHNQISDL----TPLANLTRITQL  378 (384)
T ss_dssp             CTTCSEEECCSSCCSCCGGGGGCTTCCEEECC-SSCCCCCG--GGGGCTTCCEEECCSSCCCBC----GGGTTCTTCSEE
T ss_pred             hcccCeEECCCCCCCCCcccccCCCCCEEECC-CCCCCCCh--hHcCCCCCCEEECCCCcCCCC----hhhccCCCCCEe
Confidence            34567788888888877777778888888888 55787775  377788888888888877655    567777877777


Q ss_pred             cc
Q 004969          204 RF  205 (721)
Q Consensus       204 ~~  205 (721)
                      ..
T Consensus       379 ~L  380 (384)
T d2omza2         379 GL  380 (384)
T ss_dssp             EC
T ss_pred             eC
Confidence            54

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.42  E-value=1.8e-05  Score=74.95  Aligned_cols=79  Identities=16%  Similarity=0.297  Sum_probs=68.3

Q ss_pred             cceEeecccccccc-c--ccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchh
Q 004969          126 MCEVLNLRSSRFRK-L--NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAE  202 (721)
Q Consensus       126 ~~~~~~~~~~~~~~-~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (721)
                      .-+.|+|++|+|.. +  ..++.+++|++|+|+ ++.|+.+..+.|..+++|+.|.|.+|++..+=.  .++..|++|++
T Consensus        30 ~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~-~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~--~~F~~l~~L~~  106 (192)
T d1w8aa_          30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELK-RNQLTGIEPNAFEGASHIQELQLGENKIKEISN--KMFLGLHQLKT  106 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECC-SSCCCCBCTTTTTTCTTCCEEECCSCCCCEECS--SSSTTCTTCCE
T ss_pred             CCCEEEeCCCCCcccccccccCCCceEeeeecc-ccccccccccccccccccceeeeccccccccCH--HHHhCCCcccc
Confidence            45789999999953 4  566889999999999 999999999999999999999999999997732  35889999999


Q ss_pred             hccce
Q 004969          203 LRFQN  207 (721)
Q Consensus       203 ~~~~~  207 (721)
                      |++++
T Consensus       107 L~L~~  111 (192)
T d1w8aa_         107 LNLYD  111 (192)
T ss_dssp             EECCS
T ss_pred             cccCC
Confidence            97654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=1.3e-05  Score=74.23  Aligned_cols=86  Identities=21%  Similarity=0.173  Sum_probs=71.1

Q ss_pred             HHhhcCCccceEeeccccccccccc----ccccceeeEEecccccccccccccccccccccchhccccccchhhhHHH--
Q 004969          118 RNLSQRGLMCEVLNLRSSRFRKLNM----IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTI--  191 (721)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  191 (721)
                      ..+++.--.-++|||++|+|..+..    ++.+++|++|+|+ .|.|+++.+..|-.+++|+.|++.+|.|...++.-  
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls-~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~  136 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLS-GNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST  136 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCT-TSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHH
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccc-cCccccchhhhhhhccccceeecCCCCcCcCcccchh
Confidence            3344434467889999999999853    4578999999999 89999999999999999999999999998776543  


Q ss_pred             ---HHhhcCCcchhhc
Q 004969          192 ---AALSKLPSLAELR  204 (721)
Q Consensus       192 ---~~~~~~~~~~~~~  204 (721)
                         ..+..+|+|+.|.
T Consensus       137 y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         137 YISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHTTSTTCCEET
T ss_pred             HHHHHHHHCCCCCEEC
Confidence               4578899999883

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.0032  Score=67.45  Aligned_cols=193  Identities=12%  Similarity=0.030  Sum_probs=113.1

Q ss_pred             CeEEEEEeCCCCCEEEEEE---------CCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEE
Q 004969          455 RPRQFEYHPSISCLMVFGT---------LDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKL  525 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs---------~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrI  525 (721)
                      .+....||| |+++++.+.         ..|.+.++|+.++..............+....|+ |+++.+|-.. ++.|.+
T Consensus        62 ~~~~~~~Sp-D~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wS-PDG~~iafv~-~~nl~~  138 (465)
T d1xfda1          62 RAIRYEISP-DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWG-PKGQQLIFIF-ENNIYY  138 (465)
T ss_dssp             TCSEEEECT-TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBC-SSTTCEEEEE-TTEEEE
T ss_pred             ccceeEECC-CCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeec-cCCceEEEEe-cceEEE
Confidence            366788999 899888764         3578999999988765443322334456667898 6777776654 567888


Q ss_pred             EEcCCCCCcccccccCcceeEeccC---------CCeEEEEEecCCCEEEEEeC-CCcEE--------------------
Q 004969          526 YDIRHMPPSIRGMHYGAGTVTFDEF---------DQLTSVHVNSMDELFLASGY-SKNIA--------------------  575 (721)
Q Consensus       526 WDi~~~~~~~~~~~~~~~~~~~~~~---------~~V~sv~~sp~~~~lls~g~-Dg~Ir--------------------  575 (721)
                      .+..++........+....+.....         ..-.++.|+|+|..|+.... +..|.                    
T Consensus       139 ~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Y  218 (465)
T d1xfda1         139 CAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHY  218 (465)
T ss_dssp             ESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEEC
T ss_pred             EecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeec
Confidence            8887655422222222111111111         11257789999999988752 33333                    


Q ss_pred             -------------EEECCCCcEEEEEcc-----ccCCCeEEEEEcCCCCcEEEEE-ECC---CcEEEEECCCCCceeEEE
Q 004969          576 -------------LYDINSGRRLQVFAD-----MHKEHINVVKFSNHSPSIFATS-SFD---QDVKLWDLRQKPIQPCYT  633 (721)
Q Consensus       576 -------------lWDl~s~~~v~~l~~-----~h~~~V~sI~fsPdg~~lLaSg-s~D---gtIrIWDlrs~~~~~~~~  633 (721)
                                   ++|+.++........     .....+..+.|+|++ .+++.. ..+   ..|.++|..++++..+..
T Consensus       219 p~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~-~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~  297 (465)
T d1xfda1         219 PKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATST-KVAVTWLNRAQNVSILTLCDATTGVCTKKHE  297 (465)
T ss_dssp             CBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSS-EEEEEEEETTSCEEEEEEEETTTCCEEEEEE
T ss_pred             cccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCC-eEEEEEEccccccceEEEEcCCCCcEEEEEE
Confidence                         344433322111110     012236778999998 555443 323   258889999987765554


Q ss_pred             ecCCCCeE-----EEEEecCCCEE
Q 004969          634 ASSSKGNV-----MVCFSPDDHYL  652 (721)
Q Consensus       634 ~~~~~~~v-----sl~fSpdg~~L  652 (721)
                      -. ..+++     ...|+|+|+.+
T Consensus       298 e~-~~~wv~~~~~~p~~~~dg~~~  320 (465)
T d1xfda1         298 DE-SEAWLHRQNEEPVFSKDGRKF  320 (465)
T ss_dssp             EE-CSSCCCCCCCCCEECTTSCSE
T ss_pred             Ec-CCceEeccCCceeEccCCCee
Confidence            32 22222     36899999843

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.25  E-value=5e-05  Score=78.61  Aligned_cols=74  Identities=15%  Similarity=0.334  Sum_probs=65.7

Q ss_pred             ceEeecccccccccccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhccc
Q 004969          127 CEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQ  206 (721)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (721)
                      -+.|+|+++.|..|.-++.|.+|++|+|. +|.|+.++.  |+.||+|++|.+.+|+|..+    .++++|++|+.|+..
T Consensus        46 l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls-~N~l~~l~~--l~~L~~L~~L~L~~n~i~~i----~~l~~l~~L~~L~~~  118 (384)
T d2omza2          46 VTTLQADRLGIKSIDGVEYLNNLTQINFS-NNQLTDITP--LKNLTKLVDILMNNNQIADI----TPLANLTNLTGLTLF  118 (384)
T ss_dssp             CCEEECCSSCCCCCTTGGGCTTCCEEECC-SSCCCCCGG--GTTCTTCCEEECCSSCCCCC----GGGTTCTTCCEEECC
T ss_pred             CCEEECCCCCCCCccccccCCCCCEEeCc-CCcCCCCcc--ccCCcccccccccccccccc----ccccccccccccccc
Confidence            57899999999999888899999999999 779999975  99999999999999999876    578899998888654


Q ss_pred             e
Q 004969          207 N  207 (721)
Q Consensus       207 ~  207 (721)
                      .
T Consensus       119 ~  119 (384)
T d2omza2         119 N  119 (384)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.23  E-value=6e-05  Score=72.38  Aligned_cols=72  Identities=19%  Similarity=0.365  Sum_probs=34.4

Q ss_pred             eEeecccccccccccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhccc
Q 004969          128 EVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQ  206 (721)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (721)
                      +.|+++++.+.++..++..+.|.++.+. .+.++.+.  .++.+|+|+.|.+.+|++..+    .++++|++|++|++.
T Consensus       115 ~~L~l~~~~~~~~~~l~~l~~l~~l~~~-~n~l~~~~--~~~~l~~L~~l~l~~n~l~~i----~~l~~l~~L~~L~Ls  186 (210)
T d1h6ta2         115 KSLSLEHNGISDINGLVHLPQLESLYLG-NNKITDIT--VLSRLTKLDTLSLEDNQISDI----VPLAGLTKLQNLYLS  186 (210)
T ss_dssp             CEEECTTSCCCCCGGGGGCTTCCEEECC-SSCCCCCG--GGGGCTTCSEEECCSSCCCCC----GGGTTCTTCCEEECC
T ss_pred             cccccccccccccccccccccccccccc-cccccccc--ccccccccccccccccccccc----ccccCCCCCCEEECC
Confidence            3455555555555544445555555554 33444432  234445555555555544432    334455555555444

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.22  E-value=0.039  Score=52.57  Aligned_cols=196  Identities=10%  Similarity=0.077  Sum_probs=105.4

Q ss_pred             EeCCC--CCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeC-C-----CeEEEEEcCCCC
Q 004969          461 YHPSI--SCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD-N-----GSLKLYDIRHMP  532 (721)
Q Consensus       461 fsP~d--g~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~-D-----GtVrIWDi~~~~  532 (721)
                      .+| +  |+.+|..+ +|.|.+.|+.+++... +.  .+.+.+...+|+ ++++.|+-... +     +.|.+++..++.
T Consensus         6 ~sP-di~G~~v~f~~-~~dl~~~d~~~g~~~~-Lt--~~~~~~~~p~~S-PDG~~iaf~~~~~~~~~~~~i~~~~~~~g~   79 (281)
T d1k32a2           6 LNP-DIHGDRIIFVC-CDDLWEHDLKSGSTRK-IV--SNLGVINNARFF-PDGRKIAIRVMRGSSLNTADLYFYNGENGE   79 (281)
T ss_dssp             EEE-EEETTEEEEEE-TTEEEEEETTTCCEEE-EE--CSSSEEEEEEEC-TTSSEEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred             cCC-CCCCCEEEEEe-CCcEEEEECCCCCEEE-Ee--cCCCcccCEEEC-CCCCEEEEEEeeCCCCCceEEEEEEecCCc
Confidence            467 6  78887664 5679999999887654 43  456778899999 78888875432 2     236666666654


Q ss_pred             CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC------CCcEEEEECCCCcEEEEEcc----------------
Q 004969          533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY------SKNIALYDINSGRRLQVFAD----------------  590 (721)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~------Dg~IrlWDl~s~~~v~~l~~----------------  590 (721)
                      ..  .+.... ..............|+|++..++....      ...+...+...+.......+                
T Consensus        80 ~~--~lt~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (281)
T d1k32a2          80 IK--RITYFS-GKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGR  156 (281)
T ss_dssp             EE--ECCCCC-EEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEE
T ss_pred             eE--EeeecC-CCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecCCccceeeecCCCeEEEe
Confidence            31  111111 001111123466778888887776532      12234444433221110000                


Q ss_pred             --------------------------------ccCCCeEEEEEcCCCCcEEEEEECC--CcEEEEECCCCCceeEEEecC
Q 004969          591 --------------------------------MHKEHINVVKFSNHSPSIFATSSFD--QDVKLWDLRQKPIQPCYTASS  636 (721)
Q Consensus       591 --------------------------------~h~~~V~sI~fsPdg~~lLaSgs~D--gtIrIWDlrs~~~~~~~~~~~  636 (721)
                                                      ..........+.++.  ++.....+  ..|.++|+.++....+   ..
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~d~~g~~~~~l---t~  231 (281)
T d1k32a2         157 NTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHR--IYFITDIDGFGQIYSTDLDGKDLRKH---TS  231 (281)
T ss_dssp             SCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTE--EEEEECTTSSCEEEEEETTSCSCEEC---CC
T ss_pred             eccccceeeeeccCCcceeeeeccccceeeccCCccccceeeeeccc--cceecccccccceEEEeCCCCceEEe---ec
Confidence                                            011112222333322  33333333  3466778777654322   22


Q ss_pred             CCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcc
Q 004969          637 SKGNVMVCFSPDDHYLLGKGSGTSMFVQSLRGDPF  671 (721)
Q Consensus       637 ~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~g~~l  671 (721)
                      ........|+|||+.|+... ++.|+++|+.+...
T Consensus       232 ~~~~~~~~~SpDG~~I~f~~-~~~l~~~d~~~g~~  265 (281)
T d1k32a2         232 FTDYYPRHLNTDGRRILFSK-GGSIYIFNPDTEKI  265 (281)
T ss_dssp             CCSSCEEEEEESSSCEEEEE-TTEEEEECTTTCCE
T ss_pred             CCCcccccCcCCCCEEEEEe-CCEEEEEECCCCCE
Confidence            22222347999999988654 78899999985543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=5.3e-05  Score=75.95  Aligned_cols=104  Identities=18%  Similarity=0.212  Sum_probs=67.3

Q ss_pred             cccceEeeccCCchhhHHHHHhhcCCccceEeeccccccccc--ccccccceeeEEecccccccccccccccccccccch
Q 004969           99 DQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKL--NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLIC  176 (721)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  176 (721)
                      -.+|+.++|..+.+.. .-.+.+...-.-+.|+|+.|+|..+  +.+...+.|+.|+|. .|.++.+..+.|..||+|+.
T Consensus       128 ~~~L~~l~l~~N~l~~-i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~-~N~l~~i~~~~f~~l~~L~~  205 (284)
T d1ozna_         128 LAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH-QNRVAHVHPHAFRDLGRLMT  205 (284)
T ss_dssp             CTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC-SSCCCEECTTTTTTCTTCCE
T ss_pred             hcccchhhhccccccc-cChhHhccccchhhcccccCcccccchhhhccccccchhhhh-hccccccChhHhhhhhhccc
Confidence            4566777777765532 1122222333456777777777766  345566777777777 66777777777777777777


Q ss_pred             hccccccchhhhHHHHHhhcCCcchhhccc
Q 004969          177 LSMCETRVGNLWTTIAALSKLPSLAELRFQ  206 (721)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (721)
                      |.+.+|++..+..  .++..+++|++|.+.
T Consensus       206 L~l~~N~i~~~~~--~~~~~~~~L~~L~l~  233 (284)
T d1ozna_         206 LYLFANNLSALPT--EALAPLRALQYLRLN  233 (284)
T ss_dssp             EECCSSCCSCCCH--HHHTTCTTCCEEECC
T ss_pred             ccccccccccccc--cccccccccCEEEec
Confidence            7777777776533  456777777777765

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.12  E-value=0.11  Score=51.37  Aligned_cols=184  Identities=11%  Similarity=0.031  Sum_probs=115.3

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCC--CCCCeEEEEEeeCCCCEEEEEeCC----CeEEEEEc
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFG--AMNSVLGLCWLKKYPSKLIAGSDN----GSLKLYDI  528 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~--H~~~V~sl~fsp~d~~~LaSgs~D----GtVrIWDi  528 (721)
                      .+.++++.+ ++.++++ +.+| |.++|..+++.........  ....++.+.+. +++++.++....    +.-.+|.+
T Consensus        60 ~~~~i~~~~-dg~l~va-~~~g-l~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd-~~G~iw~~~~~~~~~~~~g~l~~~  135 (295)
T d2ghsa1          60 MGSALAKIS-DSKQLIA-SDDG-LFLRDTATGVLTLHAELESDLPGNRSNDGRMH-PSGALWIGTMGRKAETGAGSIYHV  135 (295)
T ss_dssp             CEEEEEEEE-TTEEEEE-ETTE-EEEEETTTCCEEEEECSSTTCTTEEEEEEEEC-TTSCEEEEEEETTCCTTCEEEEEE
T ss_pred             CcEEEEEec-CCCEEEE-EeCc-cEEeecccceeeEEeeeecCCCcccceeeEEC-CCCCEEEEeccccccccceeEeee
Confidence            478899888 7766654 5554 8999999887654433211  12357778776 677766554322    23345555


Q ss_pred             CCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCC------cE-E-EEEccccCCCeEEE
Q 004969          529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSG------RR-L-QVFADMHKEHINVV  599 (721)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~------~~-v-~~l~~~h~~~V~sI  599 (721)
                      ..++.          .........-+.++|++++..++.+. ..+.|..|++...      +. + ..+.+ ..+....+
T Consensus       136 ~~g~~----------~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~-~~g~pdG~  204 (295)
T d2ghsa1         136 AKGKV----------TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTG-IKGGMDGS  204 (295)
T ss_dssp             ETTEE----------EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTT-SSSEEEEE
T ss_pred             cCCcE----------EEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCc-ccccccce
Confidence            44321          11112223457889999998777665 4678998887521      11 1 12222 44567899


Q ss_pred             EEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEe-cCCCEEEEEe
Q 004969          600 KFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFS-PDDHYLLGKG  656 (721)
Q Consensus       600 ~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fS-pdg~~Lasgs  656 (721)
                      ++..+| ++.++.-..+.|..||.. ++......++. ..+++++|- +|.+.|+..+
T Consensus       205 ~vD~~G-nlWva~~~~g~V~~~dp~-G~~~~~i~lP~-~~~T~~~FGG~d~~~LyvTt  259 (295)
T d2ghsa1         205 VCDAEG-HIWNARWGEGAVDRYDTD-GNHIARYEVPG-KQTTCPAFIGPDASRLLVTS  259 (295)
T ss_dssp             EECTTS-CEEEEEETTTEEEEECTT-CCEEEEEECSC-SBEEEEEEESTTSCEEEEEE
T ss_pred             EEcCCC-CEEeeeeCCCceEEecCC-CcEeeEecCCC-CceEEEEEeCCCCCEEEEEE
Confidence            999999 788777778899999965 55554555543 345688996 6777666543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.00078  Score=72.50  Aligned_cols=152  Identities=12%  Similarity=0.013  Sum_probs=95.5

Q ss_pred             EEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCC-CCCCeEEEEEeeCCCCEEEEEe---------CCCeEEEEEcC
Q 004969          460 EYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFG-AMNSVLGLCWLKKYPSKLIAGS---------DNGSLKLYDIR  529 (721)
Q Consensus       460 afsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~-H~~~V~sl~fsp~d~~~LaSgs---------~DGtVrIWDi~  529 (721)
                      .|.+ ++.++. -..+|.|.+||+.+++....+.... ..-.+....|+ +++++++.+.         ..+.+.++|+.
T Consensus        23 ~W~~-~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~S-pD~~~vl~~~~~~~~~r~s~~~~~~i~d~~   99 (465)
T d1xfda1          23 KWIS-DTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEIS-PDREYALFSYNVEPIYQHSYTGYYVLSKIP   99 (465)
T ss_dssp             CBSS-SSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEEC-TTSSEEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred             EEeC-CCcEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEEC-CCCCeEEEEEcccceeEeeccccEEEEEcc
Confidence            4666 555544 3457889999999887654444221 22356777888 7888877653         35788999998


Q ss_pred             CCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCC--------------
Q 004969          530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEH--------------  595 (721)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~--------------  595 (721)
                      ++.........       .....+....|+|+|..++-.. ++.+.+.+..++..++....+....              
T Consensus       100 ~~~~~~l~~~~-------~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~  171 (465)
T d1xfda1         100 HGDPQSLDPPE-------VSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEI  171 (465)
T ss_dssp             SCCCEECCCTT-------CCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTT
T ss_pred             CCceeeccCcc-------CCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhh
Confidence            86542110000       0112345678999999988765 5678888888776665544222221              


Q ss_pred             ---eEEEEEcCCCCcEEEEEE-CCCcEEEEEC
Q 004969          596 ---INVVKFSNHSPSIFATSS-FDQDVKLWDL  623 (721)
Q Consensus       596 ---V~sI~fsPdg~~lLaSgs-~DgtIrIWDl  623 (721)
                         -.++.|+||| ..||... .+..|..|.+
T Consensus       172 ~~~~~a~~WSPDg-k~iaf~~~D~s~V~~~~~  202 (465)
T d1xfda1         172 LKTHIAHWWSPDG-TRLAYAAINDSRVPIMEL  202 (465)
T ss_dssp             SSSSEEEEECTTS-SEEEEEEEECTTSCEEEE
T ss_pred             ccccceEEECCCC-CeEEEEEecccccceeec
Confidence               2467899999 5666554 4455555554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=7.3e-05  Score=74.36  Aligned_cols=76  Identities=22%  Similarity=0.303  Sum_probs=58.1

Q ss_pred             ceEeecccccccccc--cccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhc
Q 004969          127 CEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELR  204 (721)
Q Consensus       127 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (721)
                      =++|+|++|+|..+.  .++.+++|++|+|+ .|.|+.++.  |..||+|+.|.+.+|++...+.   .+.++++|++|.
T Consensus        33 l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~-~N~l~~l~~--~~~l~~L~~L~Ls~N~l~~~~~---~~~~l~~L~~L~  106 (266)
T d1p9ag_          33 TTILHLSENLLYTFSLATLMPYTRLTQLNLD-RAELTKLQV--DGTLPVLGTLDLSHNQLQSLPL---LGQTLPALTVLD  106 (266)
T ss_dssp             CCEEECTTSCCSEEEGGGGTTCTTCCEEECT-TSCCCEEEC--CSCCTTCCEEECCSSCCSSCCC---CTTTCTTCCEEE
T ss_pred             CCEEECcCCcCCCcCHHHhhccccccccccc-ccccccccc--cccccccccccccccccccccc---cccccccccccc
Confidence            367889888888874  56788889999998 668888865  5678999999999988876544   456777787776


Q ss_pred             ccee
Q 004969          205 FQNW  208 (721)
Q Consensus       205 ~~~~  208 (721)
                      ...+
T Consensus       107 l~~~  110 (266)
T d1p9ag_         107 VSFN  110 (266)
T ss_dssp             CCSS
T ss_pred             cccc
Confidence            5443

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.96  E-value=0.19  Score=48.74  Aligned_cols=196  Identities=9%  Similarity=0.006  Sum_probs=120.5

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 004969          456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI  535 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~  535 (721)
                      +.+++|++.++.++.+-..++.|+..++..+.....+.  .....+.++++....+....+-...+.|.+.++...... 
T Consensus        38 ~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~--~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~-  114 (263)
T d1npea_          38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR--QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR-  114 (263)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC--TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-
T ss_pred             EEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEE--eccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEE-
Confidence            67899998444444444567889998987655544443  223567888875334444455566789999998864431 


Q ss_pred             cccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC-Cc--EEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969          536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS-KN--IALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS  612 (721)
Q Consensus       536 ~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D-g~--IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg  612 (721)
                              .+..........++++|..+.++.+... +.  |.--++........... .-....++++.+.+..+..+-
T Consensus       115 --------~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~-~~~~P~glaiD~~~~~lYw~d  185 (263)
T d1npea_         115 --------VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQD-NLGLPNGLTFDAFSSQLCWVD  185 (263)
T ss_dssp             --------EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECT-TCSCEEEEEEETTTTEEEEEE
T ss_pred             --------EEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeee-cccccceEEEeecCcEEEEEe
Confidence                    1111122457899999998888876532 23  44445553332222222 345678999998875555665


Q ss_pred             ECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEe-CCCcEEEEEcC
Q 004969          613 SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKG-SGTSMFVQSLR  667 (721)
Q Consensus       613 s~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs-~Dg~I~VWDl~  667 (721)
                      ...+.|...|+.......+.  .+...+..+++.  +.+|+... ..+.|...|..
T Consensus       186 ~~~~~I~~~~~~g~~~~~v~--~~~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~  237 (263)
T d1npea_         186 AGTHRAECLNPAQPGRRKVL--EGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLA  237 (263)
T ss_dssp             TTTTEEEEEETTEEEEEEEE--ECCCSEEEEEEE--TTEEEEEETTTTEEEEEETT
T ss_pred             CCCCEEEEEECCCCCeEEEE--CCCCCcEEEEEE--CCEEEEEECCCCEEEEEECC
Confidence            67788999999765433333  333445667765  45555444 56777777775

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.96  E-value=0.00015  Score=70.12  Aligned_cols=74  Identities=14%  Similarity=0.245  Sum_probs=65.3

Q ss_pred             eEeecccccccccccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhccce
Q 004969          128 EVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQN  207 (721)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (721)
                      +.|+|.++.|..|.-++.+++|++|+|. .|.|+.+..  |..+|+|+.|.+.+|.+.++    .++.++++|+.|+++.
T Consensus        44 ~~L~l~~~~i~~l~~l~~l~~L~~L~ls-~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i----~~l~~l~~L~~l~l~~  116 (227)
T d1h6ua2          44 TTLSAFGTGVTTIEGVQYLNNLIGLELK-DNQITDLAP--LKNLTKITELELSGNPLKNV----SAIAGLQSIKTLDLTS  116 (227)
T ss_dssp             CEEECTTSCCCCCTTGGGCTTCCEEECC-SSCCCCCGG--GTTCCSCCEEECCSCCCSCC----GGGTTCTTCCEEECTT
T ss_pred             CEEECCCCCCCcchhHhcCCCCcEeecC-Cceeecccc--cccccccccccccccccccc----cccccccccccccccc
Confidence            6789999999999888999999999999 888998854  99999999999999988765    7899999999998765


Q ss_pred             e
Q 004969          208 W  208 (721)
Q Consensus       208 ~  208 (721)
                      |
T Consensus       117 ~  117 (227)
T d1h6ua2         117 T  117 (227)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00012  Score=73.36  Aligned_cols=103  Identities=18%  Similarity=0.221  Sum_probs=71.4

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccc--cccccceeeEEecccccccccccccccccccccchh
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL  177 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  177 (721)
                      .+|++++|+.+.+..- ....+..-..-+.+++++|+|..+.  .+..+.+|++|+|. .++|+.+..+.|..|++|+.|
T Consensus       105 ~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~-~N~l~~l~~~~f~~l~~L~~l  182 (284)
T d1ozna_         105 GRLHTLHLDRCGLQEL-GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH-GNRISSVPERAFRGLHSLDRL  182 (284)
T ss_dssp             TTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCEECTTTTTTCTTCCEE
T ss_pred             ccCCEEecCCcccccc-cccccchhcccchhhhccccccccChhHhccccchhhcccc-cCcccccchhhhccccccchh
Confidence            4688888888665321 1112222223367888888888763  46677788888888 668888888888888888888


Q ss_pred             ccccccchhhhHHHHHhhcCCcchhhccc
Q 004969          178 SMCETRVGNLWTTIAALSKLPSLAELRFQ  206 (721)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (721)
                      .|.+|++..+  .-.++.++++|.+|++.
T Consensus       183 ~l~~N~l~~i--~~~~f~~l~~L~~L~l~  209 (284)
T d1ozna_         183 LLHQNRVAHV--HPHAFRDLGRLMTLYLF  209 (284)
T ss_dssp             ECCSSCCCEE--CTTTTTTCTTCCEEECC
T ss_pred             hhhhcccccc--ChhHhhhhhhccccccc
Confidence            8888888755  22457777888887543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.00078  Score=67.43  Aligned_cols=104  Identities=15%  Similarity=0.289  Sum_probs=43.0

Q ss_pred             cceeeEeecCCccccchHHHHHHHHHhcccceEeeccCCchhhHHHHHhhcCCccceEeeccc-ccccccc---cccccc
Q 004969           72 EIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRS-SRFRKLN---MIGEFK  147 (721)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~  147 (721)
                      .++.+|+   +.|.+..+-...+++.. .+|+.++|.+..+....++.+.+- -+=+.|+|+. +.+..-.   ++..++
T Consensus        47 ~L~~LdL---s~~~i~~~~l~~l~~~c-~~L~~L~L~~~~l~~~~~~~l~~~-~~L~~L~Ls~c~~itd~~l~~l~~~~~  121 (284)
T d2astb2          47 RVQHMDL---SNSVIEVSTLHGILSQC-SKLQNLSLEGLRLSDPIVNTLAKN-SNLVRLNLSGCSGFSEFALQTLLSSCS  121 (284)
T ss_dssp             CCCEEEC---TTCEECHHHHHHHHTTB-CCCSEEECTTCBCCHHHHHHHTTC-TTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred             CCCEEEC---CCCccCHHHHHHHHHhC-CCcccccccccCCCcHHHHHHhcC-CCCcCccccccccccccccchhhHHHH
Confidence            4444444   23344444333333222 345555555555555555554431 1223455543 2232111   122345


Q ss_pred             eeeEEeccccccccc--ccccccccccccchhccc
Q 004969          148 RIHTLNLDYSTSLTS--FKEDCFSCMPNLICLSMC  180 (721)
Q Consensus       148 ~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  180 (721)
                      +|+.|+|++|..++.  +..-.....|+|+.|.+.
T Consensus       122 ~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~  156 (284)
T d2astb2         122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS  156 (284)
T ss_dssp             TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred             hccccccccccccccccchhhhcccccccchhhhc
Confidence            555555555544432  111222333455555543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.38  E-value=0.13  Score=53.54  Aligned_cols=189  Identities=11%  Similarity=0.092  Sum_probs=113.8

Q ss_pred             EEEEEECCCeEEEEECCCCeEEEEeecC--------CCC-----------------------------CCe--EEEEEee
Q 004969          468 LMVFGTLDGEIVVVNHENENIVSYIPSF--------GAM-----------------------------NSV--LGLCWLK  508 (721)
Q Consensus       468 ~LasGs~DG~I~IWdl~tg~~i~~l~~~--------~H~-----------------------------~~V--~sl~fsp  508 (721)
                      .+.||+..|.|+|+-+.+++.+..+...        |..                             +-.  ..+.+..
T Consensus        15 ~f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~Td   94 (459)
T d1fwxa2          15 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTE   94 (459)
T ss_dssp             EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEET
T ss_pred             EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccC
Confidence            3667899999999999999888777531        000                             011  1344420


Q ss_pred             --CCCCEEEEEe-CCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEe--cCCCEEEEEeCC------------
Q 004969          509 --KYPSKLIAGS-DNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVN--SMDELFLASGYS------------  571 (721)
Q Consensus       509 --~d~~~LaSgs-~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s--p~~~~lls~g~D------------  571 (721)
                        .+|++++... .++.|.+-|+++.+..        .++.......+..+...  |...+++..+.+            
T Consensus        95 GtyDGrylFVNDkan~RVAvIdl~~fkt~--------kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~  166 (459)
T d1fwxa2          95 GKYDGRFLFMNDKANTRVARVRCDVMKCD--------AILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNME  166 (459)
T ss_dssp             TEEEEEEEEEEETTTTEEEEEETTTTEEE--------EEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTT
T ss_pred             CccceeEEEEEcCCCceEEEEECcceeee--------EEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCcccc
Confidence              1456665554 6788999999886541        12222222334444443  344566665542            


Q ss_pred             ------CcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECC------------------------------
Q 004969          572 ------KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD------------------------------  615 (721)
Q Consensus       572 ------g~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~D------------------------------  615 (721)
                            +.+..+|..+.+......  -.+....+.++|+| .++++.+.+                              
T Consensus       167 d~~~y~~~~t~ID~~tm~V~~QV~--V~g~ld~~~~s~dG-K~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av  243 (459)
T d1fwxa2         167 DVANYVNVFTAVDADKWEVAWQVL--VSGNLDNCDADYEG-KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAI  243 (459)
T ss_dssp             CGG-EEEEEEEEETTTTEEEEEEE--ESSCCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHH
T ss_pred             chhhcceEEEEEecCCceEEEEee--eCCChhccccCCCC-CEEEEEeccccCCcchhhcccccceEEEEechHHhHHhh
Confidence                  236789999988887776  34456789999999 566665532                              


Q ss_pred             --------CcEEEEECCCCC-ceeEEEecCCCCeEEEEEecCCCEEEEEe-CCCcEEEEEcC
Q 004969          616 --------QDVKLWDLRQKP-IQPCYTASSSKGNVMVCFSPDDHYLLGKG-SGTSMFVQSLR  667 (721)
Q Consensus       616 --------gtIrIWDlrs~~-~~~~~~~~~~~~~vsl~fSpdg~~Lasgs-~Dg~I~VWDl~  667 (721)
                              +-+.+-|.+... ...+..++....+-.+..+|||+|+++++ .+.++.|+|++
T Consensus       244 ~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~  305 (459)
T d1fwxa2         244 AAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVT  305 (459)
T ss_dssp             HHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGG
T ss_pred             hcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEeh
Confidence                    223444444311 11122222223334579999999998766 58899999985

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.00044  Score=68.43  Aligned_cols=77  Identities=16%  Similarity=0.182  Sum_probs=47.7

Q ss_pred             cceEeecccccccccc--cccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhh
Q 004969          126 MCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAEL  203 (721)
Q Consensus       126 ~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (721)
                      ..+.|+++.|+++.+.  .+..+.+|.+|+|+ +|.|+.+..+-|..|++|+.|.|.+|++..|=.   .+..+++|+.|
T Consensus       125 ~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~-~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~---~~~~~~~L~~L  200 (266)
T d1p9ag_         125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLA-NNNLTELPAGLLNGLENLDTLLLQENSLYTIPK---GFFGSHLLPFA  200 (266)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECT-TSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCCCSEE
T ss_pred             ccccccccccccceeccccccccccchhcccc-cccccccCccccccccccceeecccCCCcccCh---hHCCCCCCCEE
Confidence            3455666666666553  23455667777777 667777777777777777777777777765533   23345555555


Q ss_pred             ccc
Q 004969          204 RFQ  206 (721)
Q Consensus       204 ~~~  206 (721)
                      .++
T Consensus       201 ~L~  203 (266)
T d1p9ag_         201 FLH  203 (266)
T ss_dssp             ECC
T ss_pred             Eec
Confidence            543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.00077  Score=61.43  Aligned_cols=59  Identities=17%  Similarity=0.298  Sum_probs=38.7

Q ss_pred             eEeecccc-cccccc--cccccceeeEEecccccccccccccccccccccchhccccccchhh
Q 004969          128 EVLNLRSS-RFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNL  187 (721)
Q Consensus       128 ~~~~~~~~-~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (721)
                      +.|+|.++ +++.+.  .+..+.+|++|+|. +|.|+.|+.+-|..+|+|+.|.|.+|++..+
T Consensus        34 ~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls-~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l   95 (156)
T d2ifga3          34 TELYIENQQHLQHLELRDLRGLGELRNLTIV-KSGLRFVAPDAFHFTPRLSRLNLSFNALESL   95 (156)
T ss_dssp             SEEECCSCSSCCEECGGGSCSCCCCSEEECC-SSCCCEECTTGGGSCSCCCEEECCSSCCSCC
T ss_pred             CeeecCCCccccccCchhhccccccCcceee-ccccCCcccccccccccccceeccCCCCccc
Confidence            34566544 366554  34556677777777 6677777777777777777777777777644

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.08  E-value=0.00091  Score=67.07  Aligned_cols=99  Identities=15%  Similarity=0.261  Sum_probs=70.0

Q ss_pred             ccceEeeccCCchhhHHHHHhhcCC-ccceEeecccccccccc--cccccceeeEEecccccccccccccccccccccch
Q 004969          100 QKLRVVDLHDSSFGKDFIRNLSQRG-LMCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLIC  176 (721)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  176 (721)
                      .+|+++++.++.+..     +.... -+.+.|+|+.|++....  .+.....+..|+++ .+.|+++..++|..+|+|+.
T Consensus       150 ~~L~~l~l~~n~l~~-----l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s-~n~l~~~~~~~~~~l~~L~~  223 (305)
T d1xkua_         150 KKLSYIRIADTNITT-----IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS-FNSISAVDNGSLANTPHLRE  223 (305)
T ss_dssp             TTCCEEECCSSCCCS-----CCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECC-SSCCCEECTTTGGGSTTCCE
T ss_pred             cccCccccccCCccc-----cCcccCCccCEEECCCCcCCCCChhHhhccccccccccc-ccccccccccccccccccee
Confidence            467777777765421     11111 13456788777765552  34566778888888 67899998899999999999


Q ss_pred             hccccccchhhhHHHHHhhcCCcchhhccce
Q 004969          177 LSMCETRVGNLWTTIAALSKLPSLAELRFQN  207 (721)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (721)
                      |.+.+|++..+-   +++.+|++|+.|.++.
T Consensus       224 L~L~~N~L~~lp---~~l~~l~~L~~L~Ls~  251 (305)
T d1xkua_         224 LHLNNNKLVKVP---GGLADHKYIQVVYLHN  251 (305)
T ss_dssp             EECCSSCCSSCC---TTTTTCSSCCEEECCS
T ss_pred             eecccccccccc---cccccccCCCEEECCC
Confidence            999998887652   4688888888887664

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.001  Score=60.56  Aligned_cols=75  Identities=13%  Similarity=0.181  Sum_probs=60.4

Q ss_pred             eecccccc-cccccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhccc
Q 004969          130 LNLRSSRF-RKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQ  206 (721)
Q Consensus       130 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (721)
                      ++++.+.+ ..+.-++.+.+|..|.|+.++.|+.|+.+=|..||+|+.|.|.+|+|..+  .-.|+..+++|++|.++
T Consensus        13 l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i--~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV--APDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE--CTTGGGSCSCCCEEECC
T ss_pred             EEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCc--ccccccccccccceecc
Confidence            44444444 33566778899999999866689999999999999999999999999876  22468899999999765

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.96  E-value=0.033  Score=53.10  Aligned_cols=96  Identities=15%  Similarity=0.161  Sum_probs=61.9

Q ss_pred             EecC--CCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCC-----cEEEEECCCCCcee
Q 004969          558 VNSM--DELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQ-----DVKLWDLRQKPIQP  630 (721)
Q Consensus       558 ~sp~--~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~Dg-----tIrIWDlrs~~~~~  630 (721)
                      ++|+  |+.++-.+ ++.|.+.|+.+++..+ +.. +.+.+...+|+|||..+..+...++     .|.+++..++....
T Consensus         6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~-Lt~-~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           6 LNPDIHGDRIIFVC-CDDLWEHDLKSGSTRK-IVS-NLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             EEEEEETTEEEEEE-TTEEEEEETTTCCEEE-EEC-SSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             cCCCCCCCEEEEEe-CCcEEEEECCCCCEEE-Eec-CCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            4577  88887665 4578889999888654 443 6778899999999944444443332     37777777765433


Q ss_pred             EEEecC-----CCCeEEEEEecCCCEEEEEe
Q 004969          631 CYTASS-----SKGNVMVCFSPDDHYLLGKG  656 (721)
Q Consensus       631 ~~~~~~-----~~~~vsl~fSpdg~~Lasgs  656 (721)
                      +....+     ........|+|+|+.|+...
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             eeecCCCccCccccccccccCCCCCEEEEEE
Confidence            211110     01112578999999998754

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.78  Score=44.18  Aligned_cols=199  Identities=9%  Similarity=0.022  Sum_probs=118.5

Q ss_pred             CeEEEEEeCCCCCEEEEE-ECCCeEEEEECCCCeE---EEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCC
Q 004969          455 RPRQFEYHPSISCLMVFG-TLDGEIVVVNHENENI---VSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH  530 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasG-s~DG~I~IWdl~tg~~---i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~  530 (721)
                      .+.+++|++ ..+.+.-. ...+.|.-.++.....   ...+.. .....+.++++-+..++...+-...+.|.+.++..
T Consensus        31 ~~~~id~d~-~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~-~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g  108 (266)
T d1ijqa1          31 NVVALDTEV-ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (266)
T ss_dssp             SEEEEEEET-TTTEEEEEETTTTEEEEEEC--------CEEEEC-SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             ceEEEEEEe-CCCEEEEEECCCCEEEEEEecCCCCCcceEEEEe-CCCCCcceEEEeeccceEEEEecCCCEEEeEecCC
Confidence            478899999 55555544 4567777776653211   111111 22344556776534555666666778999999987


Q ss_pred             CCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeC--CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcE
Q 004969          531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY--SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSI  608 (721)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~--Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~l  608 (721)
                      ....         ............++++|..+.++.+..  .+.|.-.++.... ...+....-...+++++.+.+.++
T Consensus       109 ~~~~---------~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~-~~~l~~~~~~~p~gl~iD~~~~~l  178 (266)
T d1ijqa1         109 VKRK---------TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRL  178 (266)
T ss_dssp             SSEE---------EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEECSSCSCEEEEEEETTTTEE
T ss_pred             ceEE---------EEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCc-eecccccccceeeEEEeeccccEE
Confidence            4321         112222345688999998888877653  4567777776433 333332134667899999887556


Q ss_pred             EEEEECCCcEEEEECCCCCceeEEEecCC-CCeEEEEEecCCCEEEEE-eCCCcEEEEEcC
Q 004969          609 FATSSFDQDVKLWDLRQKPIQPCYTASSS-KGNVMVCFSPDDHYLLGK-GSGTSMFVQSLR  667 (721)
Q Consensus       609 LaSgs~DgtIrIWDlrs~~~~~~~~~~~~-~~~vsl~fSpdg~~Lasg-s~Dg~I~VWDl~  667 (721)
                      ..+-...+.|...|+.......+...... ..+..+++.  +.+|+.+ ..++.|+..+..
T Consensus       179 Yw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~  237 (266)
T d1ijqa1         179 YWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRL  237 (266)
T ss_dssp             EEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETT
T ss_pred             EEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECC
Confidence            66667788999999976544434333322 345567766  4455544 456777777654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.85  E-value=0.0014  Score=68.36  Aligned_cols=110  Identities=22%  Similarity=0.323  Sum_probs=60.8

Q ss_pred             cceeeEeecCCccccchHHHHHHHHHhcccceEeeccCCchhhHHHHHhh---cCCccceEeeccccccccccc--cc--
Q 004969           72 EIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKDFIRNLS---QRGLMCEVLNLRSSRFRKLNM--IG--  144 (721)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~--  144 (721)
                      +++.+||.....+...+...++.|    .+||+++|+++.+.-+.++.|+   ..--+=+.|||++|+|..-++  +.  
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l----~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~   78 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLL----QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG   78 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHH----TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHT
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhC----CCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHH
Confidence            566777755555555444444444    4667777777766655555443   222233457777766532111  11  


Q ss_pred             ---ccceeeEEeccccccccccc----ccccccccccchhccccccchh
Q 004969          145 ---EFKRIHTLNLDYSTSLTSFK----EDCFSCMPNLICLSMCETRVGN  186 (721)
Q Consensus       145 ---~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  186 (721)
                         .-.+|.+|+|. ++.||...    ...+..+|+|+.|.+.+|+|..
T Consensus        79 l~~~~~~L~~L~L~-~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          79 LQTPSCKIQKLSLQ-NCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TCSTTCCCCEEECT-TSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             HhcCCCCCCEEECC-CCCccccccccccchhhccccccccccccccchh
Confidence               11357777777 44565432    1345566777777777776654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.0031  Score=62.88  Aligned_cols=101  Identities=18%  Similarity=0.229  Sum_probs=69.6

Q ss_pred             eEeeccCCchhhHHHHHhhcCCccceEeecccccccc-cccccccceeeEEecccccccccc-cccccccccccchhccc
Q 004969          103 RVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRK-LNMIGEFKRIHTLNLDYSTSLTSF-KEDCFSCMPNLICLSMC  180 (721)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  180 (721)
                      +.+||....+.-+.+..+..+|..+  +.++.+.+.. +.-.+...+|++|+|. ++.|+.- -+..|..+|||+.|+|.
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~~~~~~--lrl~~~~~~~~~~~~~~~~~L~~LdLs-~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLSQGVIA--FRCPRSFMDQPLAEHFSPFRVQHMDLS-NSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHHTTCSE--EECTTCEECSCCCSCCCCBCCCEEECT-TCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCCchHHHHHHhccceE--eeccccccccchhhhccCCCCCEEECC-CCccCHHHHHHHHHhCCCccccccc
Confidence            4678888778888888888887654  4444333332 2223345588888888 4455432 23567888999999999


Q ss_pred             cccchhhhHHHHHhhcCCcchhhcccee
Q 004969          181 ETRVGNLWTTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (721)
                      ++++.+.  .+.+|.++|+|++|.+..|
T Consensus        80 ~~~l~~~--~~~~l~~~~~L~~L~Ls~c  105 (284)
T d2astb2          80 GLRLSDP--IVNTLAKNSNLVRLNLSGC  105 (284)
T ss_dssp             TCBCCHH--HHHHHTTCTTCSEEECTTC
T ss_pred             ccCCCcH--HHHHHhcCCCCcCcccccc
Confidence            8887653  5577888889999988765

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.75  E-value=0.14  Score=55.59  Aligned_cols=177  Identities=10%  Similarity=-0.004  Sum_probs=102.0

Q ss_pred             CeEEEEECCCCeEEEEeecCCCCCC-------eEEEEEeeCCC---CEEEEEeCCCeEEEEEcCCCCCcccccccCc---
Q 004969          476 GEIVVVNHENENIVSYIPSFGAMNS-------VLGLCWLKKYP---SKLIAGSDNGSLKLYDIRHMPPSIRGMHYGA---  542 (721)
Q Consensus       476 G~I~IWdl~tg~~i~~l~~~~H~~~-------V~sl~fsp~d~---~~LaSgs~DGtVrIWDi~~~~~~~~~~~~~~---  542 (721)
                      ..|.-.|+.+|+.+..++...|.-.       ..-+... .++   ..++.++.+|.+.++|-.+++..........   
T Consensus       270 ~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~-~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~  348 (560)
T d1kv9a2         270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELN-IDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWA  348 (560)
T ss_dssp             TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEE-ETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSE
T ss_pred             eeeEEecCCccceeEEEeccccccccccccceeeeeeee-cCCceeeeeeecCccceEEEEecCCCcccccccccccccc
Confidence            3566678888888877765444211       1111111 223   3677788999999999998876322211100   


Q ss_pred             ---------------------ceeEecc---CCCeEEEEEecCCCEEEEEeC----------------------------
Q 004969          543 ---------------------GTVTFDE---FDQLTSVHVNSMDELFLASGY----------------------------  570 (721)
Q Consensus       543 ---------------------~~~~~~~---~~~V~sv~~sp~~~~lls~g~----------------------------  570 (721)
                                           ....+..   ...-...+++|+...+++...                            
T Consensus       349 ~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (560)
T d1kv9a2         349 EKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADA  428 (560)
T ss_dssp             EEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGC
T ss_pred             cccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccc
Confidence                                 0000000   000124455566655554331                            


Q ss_pred             --------CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEE
Q 004969          571 --------SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM  642 (721)
Q Consensus       571 --------Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vs  642 (721)
                              .|.+.-||+.+++.+....  ......+-.+.-.+ .++++|+.||.++-+|..+++..-.+.+.......-
T Consensus       429 ~~~p~~~~~G~l~A~D~~tGk~~W~~~--~~~~~~gg~l~Tag-glVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P  505 (560)
T d1kv9a2         429 TDVPAAVVSGALLAWDPVKQKAAWKVP--YPTHWNGGTLSTAG-NLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAP  505 (560)
T ss_dssp             CCCCGGGCEEEEEEEETTTTEEEEEEE--ESSSCCCCEEEETT-TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC
T ss_pred             cCCCCcccccceEEEeCCCCeEeeecc--CCCCCCCceeEECC-CEEEEECCCCcEEEEECCCCcEeEEEECCCCccccC
Confidence                    2568899999999998876  23333222233344 477889999999999999997654454443222223


Q ss_pred             EEEecCCC-EEEEEe
Q 004969          643 VCFSPDDH-YLLGKG  656 (721)
Q Consensus       643 l~fSpdg~-~Lasgs  656 (721)
                      +.|..+|+ ||++..
T Consensus       506 ~ty~~dGkqyv~v~a  520 (560)
T d1kv9a2         506 MTFELAGRQYVAIMA  520 (560)
T ss_dssp             EEEEETTEEEEEEEE
T ss_pred             EEEEECCEEEEEEEe
Confidence            67778885 555444

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.74  E-value=0.81  Score=44.05  Aligned_cols=160  Identities=8%  Similarity=-0.012  Sum_probs=99.7

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEE--EcCCCC
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLY--DIRHMP  532 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIW--Di~~~~  532 (721)
                      .|.++++....+.+..+-...+.|.+.++........+.  .....+.+++..|..+..+.+-...+.-+||  ++....
T Consensus        80 ~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~--~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~  157 (263)
T d1npea_          80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFD--TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN  157 (263)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC
T ss_pred             cccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEec--ccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC
Confidence            488999988455555566677899999987554433332  2345688999886555555454333333444  444422


Q ss_pred             CcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEE
Q 004969          533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFAT  611 (721)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaS  611 (721)
                      ..         ......-....++++.+.++.++.+. ..+.|...|+........+.+ . ....+|++. .+ .+..+
T Consensus       158 ~~---------~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~-~-~~P~~lav~-~~-~lYwt  224 (263)
T d1npea_         158 RR---------ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-L-QYPFAVTSY-GK-NLYYT  224 (263)
T ss_dssp             CE---------EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-C-CSEEEEEEE-TT-EEEEE
T ss_pred             ce---------eeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECC-C-CCcEEEEEE-CC-EEEEE
Confidence            21         11111223457899988888887775 568899999975544333443 2 234678776 33 56666


Q ss_pred             EECCCcEEEEECCCCCce
Q 004969          612 SSFDQDVKLWDLRQKPIQ  629 (721)
Q Consensus       612 gs~DgtIrIWDlrs~~~~  629 (721)
                      -...+.|...|..+++..
T Consensus       225 d~~~~~I~~~~~~~g~~~  242 (263)
T d1npea_         225 DWKTNSVIAMDLAISKEM  242 (263)
T ss_dssp             ETTTTEEEEEETTTTEEE
T ss_pred             ECCCCEEEEEECCCCccc
Confidence            667788999999887543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=95.68  E-value=0.0025  Score=64.05  Aligned_cols=102  Identities=18%  Similarity=0.264  Sum_probs=72.8

Q ss_pred             HHHHHHH-hcccceEeeccCCchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEecccccccccccccccc
Q 004969           91 ALSLMHA-IDQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFS  169 (721)
Q Consensus        91 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  169 (721)
                      |..=||. ....|+++||..+.++.  +-++.   -..+.|+|++|+|..|-  +.+.+|.+|.|. .++++.|.+    
T Consensus        28 ~~~~l~~c~~~~l~~LdLs~~~L~~--lp~~~---~~L~~L~Ls~N~l~~lp--~~~~~L~~L~l~-~n~l~~l~~----   95 (353)
T d1jl5a_          28 AVSRLRDCLDRQAHELELNNLGLSS--LPELP---PHLESLVASCNSLTELP--ELPQSLKSLLVD-NNNLKALSD----   95 (353)
T ss_dssp             HHHHHHHHHHHTCSEEECTTSCCSC--CCSCC---TTCSEEECCSSCCSSCC--CCCTTCCEEECC-SSCCSCCCS----
T ss_pred             HHHHHHHHHHcCCCEEEeCCCCCCC--CCCCC---CCCCEEECCCCCCcccc--cchhhhhhhhhh-hcccchhhh----
Confidence            3343444 45578899998865542  22211   24688999999999774  456789999999 788998864    


Q ss_pred             cccccchhccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969          170 CMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (721)
                      ..|+|+.|.+.+|++..+    ....+|++|+.|....|
T Consensus        96 lp~~L~~L~L~~n~l~~l----p~~~~l~~L~~L~l~~~  130 (353)
T d1jl5a_          96 LPPLLEYLGVSNNQLEKL----PELQNSSFLKIIDVDNN  130 (353)
T ss_dssp             CCTTCCEEECCSSCCSSC----CCCTTCTTCCEEECCSS
T ss_pred             hccccccccccccccccc----cchhhhccceeeccccc
Confidence            346799999999998866    56677888888865433

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.58  E-value=0.38  Score=49.98  Aligned_cols=190  Identities=6%  Similarity=0.047  Sum_probs=120.2

Q ss_pred             CCCEEEEEE-CCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEee-CCCCEEEEEeCCC------------------eEE
Q 004969          465 ISCLMVFGT-LDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLK-KYPSKLIAGSDNG------------------SLK  524 (721)
Q Consensus       465 dg~~LasGs-~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp-~d~~~LaSgs~DG------------------tVr  524 (721)
                      ||+++++.. .+++|.+.|+.+.+..+.+.. .....+.++...+ +...+++.++.+.                  .+.
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~i-Pn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t  176 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEI-PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  176 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEEC-SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEec-CCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEE
Confidence            677777665 678999999999988775543 2345677776542 3445777766532                  356


Q ss_pred             EEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC---------------------------------
Q 004969          525 LYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS---------------------------------  571 (721)
Q Consensus       525 IWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D---------------------------------  571 (721)
                      ++|..+.+...+          ..-......++++++|.++++.+.+                                 
T Consensus       177 ~ID~~tm~V~~Q----------V~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~G  246 (459)
T d1fwxa2         177 AVDADKWEVAWQ----------VLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG  246 (459)
T ss_dssp             EEETTTTEEEEE----------EEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred             EEecCCceEEEE----------eeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcC
Confidence            677766443211          1112335677888999998888743                                 


Q ss_pred             -----CcEEEEECCC--C-cEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCC--------Cc--eeEEE
Q 004969          572 -----KNIALYDINS--G-RRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQK--------PI--QPCYT  633 (721)
Q Consensus       572 -----g~IrlWDl~s--~-~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~--------~~--~~~~~  633 (721)
                           +.+.+.|.+.  + ..++.+.  -......+..+|||..+++++..+.++-|+|++.-        ..  .....
T Consensus       247 k~~eingV~VVD~~~~~~~~v~~yIP--VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e  324 (459)
T d1fwxa2         247 DYQELNGVKVVDGRKEASSLFTRYIP--IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE  324 (459)
T ss_dssp             CSEEETTEEEEECSGG--CSSEEEEE--EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEEC
T ss_pred             CcEEeCCceeecccccCCcceeEEEe--cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEee
Confidence                 2234455442  1 1222222  23345678999999777777778999999999641        11  11233


Q ss_pred             ecCCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004969          634 ASSSKGNVMVCFSPDDHYLLGKGSGTSMFVQSLR  667 (721)
Q Consensus       634 ~~~~~~~vsl~fSpdg~~Lasgs~Dg~I~VWDl~  667 (721)
                      ....-++.--+|+..|.-..+---|..|--|++.
T Consensus       325 ~elglgPLht~fd~~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         325 PELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             CBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred             cccCcCccccccCCCceEEEEeeccceEEEEecc
Confidence            3445667778999988655555679999999984

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.45  E-value=0.35  Score=52.33  Aligned_cols=82  Identities=6%  Similarity=-0.036  Sum_probs=52.9

Q ss_pred             CcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCC-
Q 004969          572 KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDH-  650 (721)
Q Consensus       572 g~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~-  650 (721)
                      |.+.-||+.+|+.+.....  ..+...=...-.+ .++++|+.||.++.||.++++..-.+.+.......-+.|..+|+ 
T Consensus       457 G~l~AiD~~tGk~~W~~~~--~~p~~gg~lstag-glVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQ  533 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEH--VSPWNGGTLTTAG-NVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQ  533 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEE--SSSCCCCEEEETT-TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             ccEEEeCCCCCceEeeecC--CCCCCCceEEEcC-CEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            4688899999999988873  2222211222245 57888999999999999999764444443322211367777886 


Q ss_pred             EEEEEe
Q 004969          651 YLLGKG  656 (721)
Q Consensus       651 ~Lasgs  656 (721)
                      |++..+
T Consensus       534 Yv~v~~  539 (573)
T d1kb0a2         534 YVSVAV  539 (573)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            554433

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.37  E-value=0.0032  Score=62.89  Aligned_cols=59  Identities=19%  Similarity=0.376  Sum_probs=45.9

Q ss_pred             eEeecccccccccc--cccccceeeEEecccccccccccccccccccccchhccccccchhh
Q 004969          128 EVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNL  187 (721)
Q Consensus       128 ~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (721)
                      ++|||++|+|++|.  .++.+++|++|++. .+.++.+..+-|..+++|+.|.+.+|++..+
T Consensus        34 ~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~-~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l   94 (305)
T d1xkua_          34 ALLDLQNNKITEIKDGDFKNLKNLHTLILI-NNKISKISPGAFAPLVKLERLYLSKNQLKEL   94 (305)
T ss_dssp             CEEECCSSCCCCBCTTTTTTCTTCCEEECC-SSCCCCBCTTTTTTCTTCCEEECCSSCCSBC
T ss_pred             CEEECcCCcCCCcChhHhhccccccccccc-cccccccchhhhhCCCccCEecccCCccCcC
Confidence            46888888888883  56777888888888 6677778777788888888888888877655

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.32  E-value=0.48  Score=51.22  Aligned_cols=177  Identities=10%  Similarity=-0.082  Sum_probs=101.1

Q ss_pred             CeEEEEECCCCeEEEEeecCCCCC-------CeEEEEEeeCCCC---EEEEEeCCCeEEEEEcCCCCCccccccc-----
Q 004969          476 GEIVVVNHENENIVSYIPSFGAMN-------SVLGLCWLKKYPS---KLIAGSDNGSLKLYDIRHMPPSIRGMHY-----  540 (721)
Q Consensus       476 G~I~IWdl~tg~~i~~l~~~~H~~-------~V~sl~fsp~d~~---~LaSgs~DGtVrIWDi~~~~~~~~~~~~-----  540 (721)
                      ..+.-.|.++|+.+..++...|..       ........ .++.   .++.++.+|.+.+.|..+++........     
T Consensus       272 ~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~-~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~  350 (571)
T d2ad6a1         272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQP-VNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNV  350 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEE-ETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred             cceeeeeccchhheecccccCccccccccccccceeeee-ccCccccceeeccccceEEEEecCCCcEeeeeccCCcccc
Confidence            467778999999988887543321       11111111 2332   5678889999999999988753211000     


Q ss_pred             ----------------------CcceeEeccC-C--CeEEEEEecCCCEEEEEeC-------------------------
Q 004969          541 ----------------------GAGTVTFDEF-D--QLTSVHVNSMDELFLASGY-------------------------  570 (721)
Q Consensus       541 ----------------------~~~~~~~~~~-~--~V~sv~~sp~~~~lls~g~-------------------------  570 (721)
                                            ......+.+. .  .-...+++|....+++...                         
T Consensus       351 ~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (571)
T d2ad6a1         351 FKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA  430 (571)
T ss_dssp             EEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred             cccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCcccccccee
Confidence                                  0000000000 0  0012455555555544321                         


Q ss_pred             ------------CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCC
Q 004969          571 ------------SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSK  638 (721)
Q Consensus       571 ------------Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~  638 (721)
                                  .|.+.-+|+.+|+.+.+...  .....+-.....+ .++++|+.||.++-+|.++++..-.+.+....
T Consensus       431 ~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~--~~~~~~g~l~Tag-glVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~  507 (571)
T d2ad6a1         431 MYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWE--KFAAWGGTLYTKG-GLVWYATLDGYLKALDNKDGKELWNFKMPSGG  507 (571)
T ss_dssp             EEECTTSTTSCCCEEEEEECTTTCCEEEEEEE--SSCCCSBCEEETT-TEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred             eccccCCcccCCcccEEEeccCCCceeeEcCC--CCCCCcceeEecC-CEEEEECCCCeEEEEECCCCcEEEEEECCCCc
Confidence                        25688899999999988762  2222111122234 47778999999999999999765455544333


Q ss_pred             CeEEEEEecCCC-EEEEEe
Q 004969          639 GNVMVCFSPDDH-YLLGKG  656 (721)
Q Consensus       639 ~~vsl~fSpdg~-~Lasgs  656 (721)
                      ...-+.|..||+ |+++..
T Consensus       508 ~a~P~ty~~dGkqYi~v~~  526 (571)
T d2ad6a1         508 IGSPMTYSFKGKQYIGSMY  526 (571)
T ss_dssp             CSCCEEEEETTEEEEEEEE
T ss_pred             eecceEEEECCEEEEEEEe
Confidence            222367777886 555443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.30  E-value=0.024  Score=57.37  Aligned_cols=142  Identities=13%  Similarity=0.185  Sum_probs=92.7

Q ss_pred             HHHhhcCC-CcceeeEeecCCccccchHHHHHHHHH--hcccceEeeccCCchhhHHHHHhhc------------CCccc
Q 004969           63 EVCMQIGA-TEIEAVDVRSGTSCMLTGEFALSLMHA--IDQKLRVVDLHDSSFGKDFIRNLSQ------------RGLMC  127 (721)
Q Consensus        63 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~  127 (721)
                      .++.++.. ..+..+|+.   .+.+....+..+...  -+..||.++|..+.|+..-...+++            .-..=
T Consensus        84 ~l~~~l~~~~~L~~L~L~---~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L  160 (344)
T d2ca6a1          84 LLLQALLKCPKLHTVRLS---DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPL  160 (344)
T ss_dssp             HHHHHHTTCTTCCEEECC---SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             HHHHHHhhCCCccccccc---ccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCccc
Confidence            34444433 457778874   345555444444333  3678999999988887654333321            22223


Q ss_pred             eEeeccccccccccc------ccccceeeEEecccccccccc-----cccccccccccchhccccccchhh-hHHH-HHh
Q 004969          128 EVLNLRSSRFRKLNM------IGEFKRIHTLNLDYSTSLTSF-----KEDCFSCMPNLICLSMCETRVGNL-WTTI-AAL  194 (721)
Q Consensus       128 ~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~  194 (721)
                      +.|+++.|++..-++      +..+..|++|+|. .++|+.-     -...+..+|+|+.|.+.+|.|... .+.+ .+|
T Consensus       161 ~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~-~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l  239 (344)
T d2ca6a1         161 RSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMV-QNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL  239 (344)
T ss_dssp             CEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECC-SSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG
T ss_pred             ceeecccccccccccccccchhhhhhhhcccccc-cccccccccccchhhhhcchhhhcccccccccccccccccccccc
Confidence            467888877764433      3467789999998 5677642     235688999999999999998653 2333 467


Q ss_pred             hcCCcchhhcccee
Q 004969          195 SKLPSLAELRFQNW  208 (721)
Q Consensus       195 ~~~~~~~~~~~~~~  208 (721)
                      ..++.|++|.+..|
T Consensus       240 ~~~~~L~~L~Ls~n  253 (344)
T d2ca6a1         240 KSWPNLRELGLNDC  253 (344)
T ss_dssp             GGCTTCCEEECTTC
T ss_pred             cccccchhhhhhcC
Confidence            89999999988655

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.24  E-value=0.0016  Score=62.82  Aligned_cols=80  Identities=19%  Similarity=0.320  Sum_probs=48.8

Q ss_pred             ceEeeccccccccccc--ccccceeeEEecccccccccccccccccccccchhcccc-ccchhhhHHHHHhhcCCcchhh
Q 004969          127 CEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCE-TRVGNLWTTIAALSKLPSLAEL  203 (721)
Q Consensus       127 ~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  203 (721)
                      .+.|+|++|+|..+.-  +..+++|.+|+|+++.-.+.++.+.|..+++|..|.+-. +++.  +....++.++++|++|
T Consensus        31 l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~--~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          31 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL--YINPEAFQNLPNLQYL  108 (242)
T ss_dssp             CSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCC--EECTTSEECCTTCCEE
T ss_pred             CCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccc--cccccccccccccccc
Confidence            4567777777776653  455677777777744444556667777777777776643 2332  1222445667777777


Q ss_pred             cccee
Q 004969          204 RFQNW  208 (721)
Q Consensus       204 ~~~~~  208 (721)
                      ++..+
T Consensus       109 ~l~~~  113 (242)
T d1xwdc1         109 LISNT  113 (242)
T ss_dssp             EEESC
T ss_pred             ccchh
Confidence            66554

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.22  E-value=0.44  Score=51.62  Aligned_cols=82  Identities=13%  Similarity=0.076  Sum_probs=55.9

Q ss_pred             CCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCC
Q 004969          571 SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDH  650 (721)
Q Consensus       571 Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~  650 (721)
                      .|.+.-+|+.+|+.+.....  ..++.+-..+..+ .++++|+.||.++-+|.++++..-.+.+.......-+.|..+|+
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~--~~p~~~g~lstag-glVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~  541 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKE--HLPLWAGVLATAG-NLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE  541 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEE--SSCCCSCCEEETT-TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             CCeEEEEcCCCCcEEeecCC--CCCCccceeEEcC-CeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence            36799999999999998873  2333322233345 57778999999999999999775555544332222367888995


Q ss_pred             -EEEEE
Q 004969          651 -YLLGK  655 (721)
Q Consensus       651 -~Lasg  655 (721)
                       |+++.
T Consensus       542 qYv~i~  547 (582)
T d1flga_         542 QYLGVT  547 (582)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence             55544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.21  E-value=0.011  Score=61.25  Aligned_cols=131  Identities=18%  Similarity=0.206  Sum_probs=89.3

Q ss_pred             cceeeEeecCCccccchHHHHHHHHH--hcccceEeeccCCchhhHHHHHhh----cCCccceEeecccccccccc----
Q 004969           72 EIEAVDVRSGTSCMLTGEFALSLMHA--IDQKLRVVDLHDSSFGKDFIRNLS----QRGLMCEVLNLRSSRFRKLN----  141 (721)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~----  141 (721)
                      .+..+|+.   .+.+..+......++  .+..++.+++.++.++.+.++.|+    +..-.-+.++++.+.+....    
T Consensus       256 ~l~~l~l~---~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l  332 (460)
T d1z7xw1         256 RLRTLWIW---ECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF  332 (460)
T ss_dssp             CCCEEECT---TSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             cccccccc---cccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhc
Confidence            45556653   344555544444433  477889999999988877776654    34445577888888775432    


Q ss_pred             --cccccceeeEEeccccccccc-----ccccccccccccchhccccccchhh--hHHHHHhhcCCcchhhccc
Q 004969          142 --MIGEFKRIHTLNLDYSTSLTS-----FKEDCFSCMPNLICLSMCETRVGNL--WTTIAALSKLPSLAELRFQ  206 (721)
Q Consensus       142 --~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  206 (721)
                        +......|++|+|+ .|.|+.     |.+.++...++|+.|+|.+|+|.+-  ..=..+|+++++|++|.++
T Consensus       333 ~~~~~~~~~L~~L~Ls-~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls  405 (460)
T d1z7xw1         333 SSVLAQNRFLLELQIS-NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLS  405 (460)
T ss_dssp             HHHHHHCSSCCEEECC-SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECC
T ss_pred             ccccccccchhhhhee-eecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECC
Confidence              23344579999999 667864     5555666678899999999999762  2234568889999999764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.12  E-value=0.0034  Score=60.35  Aligned_cols=77  Identities=18%  Similarity=0.220  Sum_probs=57.7

Q ss_pred             cceEeecccccccccccc-cccceeeEE-ecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhh
Q 004969          126 MCEVLNLRSSRFRKLNMI-GEFKRIHTL-NLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAEL  203 (721)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~-~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (721)
                      .=+.|++++|++..+... ..-.++.++ .++ ++.|+.++.++|..||+|+.|.|.+|++..+  ..-++..|+.|+.|
T Consensus       154 ~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~-~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l--~~~~~~~l~~L~~l  230 (242)
T d1xwdc1         154 ESVILWLNKNGIQEIHNCAFNGTQLDELNLSD-NNNLEELPNDVFHGASGPVILDISRTRIHSL--PSYGLENLKKLRAR  230 (242)
T ss_dssp             SCEEEECCSSCCCEECTTTTTTCCEEEEECTT-CTTCCCCCTTTTTTSCCCSEEECTTSCCCCC--CSSSCTTCCEEESS
T ss_pred             cceeeecccccccccccccccchhhhcccccc-ccccccccHHHhcCCCCCCEEECCCCcCCcc--CHHHHcCCcccccC
Confidence            345588888888877542 123445455 456 8899999999999999999999999999866  12357888888887


Q ss_pred             cc
Q 004969          204 RF  205 (721)
Q Consensus       204 ~~  205 (721)
                      ++
T Consensus       231 ~~  232 (242)
T d1xwdc1         231 ST  232 (242)
T ss_dssp             SE
T ss_pred             cC
Confidence            54

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=94.97  E-value=0.0046  Score=62.04  Aligned_cols=54  Identities=15%  Similarity=0.142  Sum_probs=32.9

Q ss_pred             cccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhcccee
Q 004969          144 GEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQNW  208 (721)
Q Consensus       144 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (721)
                      +.+++|++|+|+ +|.|++|++    .+|+|++|.+.+|++..+    ..  -+++|++|+++.|
T Consensus       281 ~~~~~L~~L~Ls-~N~l~~lp~----~~~~L~~L~L~~N~L~~l----~~--~~~~L~~L~L~~N  334 (353)
T d1jl5a_         281 DLPPSLEELNVS-NNKLIELPA----LPPRLERLIASFNHLAEV----PE--LPQNLKQLHVEYN  334 (353)
T ss_dssp             CCCTTCCEEECC-SSCCSCCCC----CCTTCCEEECCSSCCSCC----CC--CCTTCCEEECCSS
T ss_pred             ccCCCCCEEECC-CCccCcccc----ccCCCCEEECCCCcCCcc----cc--ccCCCCEEECcCC
Confidence            345667777777 556777653    467777777777776554    11  1245677766544

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.81  E-value=1.1  Score=48.48  Aligned_cols=81  Identities=10%  Similarity=0.028  Sum_probs=53.0

Q ss_pred             CcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCC-
Q 004969          572 KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDH-  650 (721)
Q Consensus       572 g~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~-  650 (721)
                      |.+.-||+.+++.+....  +..++.+-..+..| .+++.|+.||.++-+|.++++..-.+.+.......-+.|..+|+ 
T Consensus       453 G~l~A~D~~TG~~~W~~~--~~~~~~gg~lsTag-glVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQ  529 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKM--ERFAVWGGTMATAG-DLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ  529 (596)
T ss_dssp             EEEEEECTTTCCEEEEEE--ESSCCCSBCEEETT-TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             ceEEEEeCCCCceecccC--CCCCCccceeEecC-CEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEE
Confidence            578899999999988765  33333222233345 57778999999999999999764444443322222367777886 


Q ss_pred             EEEEE
Q 004969          651 YLLGK  655 (721)
Q Consensus       651 ~Lasg  655 (721)
                      |++..
T Consensus       530 Yvav~  534 (596)
T d1w6sa_         530 YVAIY  534 (596)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=94.52  E-value=0.0069  Score=60.62  Aligned_cols=104  Identities=17%  Similarity=0.214  Sum_probs=71.6

Q ss_pred             cceEeeccCCchhhHHHHHhhcCCccceEeecccccccc-cccccccceeeEEecccccccc-cccccccccccccchhc
Q 004969          101 KLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRK-LNMIGEFKRIHTLNLDYSTSLT-SFKEDCFSCMPNLICLS  178 (721)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~  178 (721)
                      ++..+++....+... +......-...+.|+++++++.. +.-++.+..|..|+|+ .|.++ .++ ..|..||+|+.|.
T Consensus       198 ~~~~l~l~~~~~~~~-~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls-~N~l~g~iP-~~l~~L~~L~~L~  274 (313)
T d1ogqa_         198 NLAFVDLSRNMLEGD-ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLR-NNRIYGTLP-QGLTQLKFLHSLN  274 (313)
T ss_dssp             CCSEEECCSSEEEEC-CGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECC-SSCCEECCC-GGGGGCTTCCEEE
T ss_pred             ccccccccccccccc-ccccccccccccccccccccccccccccccccccccccCc-cCeecccCC-hHHhCCCCCCEEE
Confidence            344455554333222 11222233456788888888753 4456778899999999 78888 455 4689999999999


Q ss_pred             cccccchhhhHHHHHhhcCCcchhhccceeee
Q 004969          179 MCETRVGNLWTTIAALSKLPSLAELRFQNWLC  210 (721)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (721)
                      |.+|++.   .++..+.+|.+|..|+|+.--|
T Consensus       275 Ls~N~l~---g~iP~~~~L~~L~~l~l~~N~~  303 (313)
T d1ogqa_         275 VSFNNLC---GEIPQGGNLQRFDVSAYANNKC  303 (313)
T ss_dssp             CCSSEEE---EECCCSTTGGGSCGGGTCSSSE
T ss_pred             CcCCccc---ccCCCcccCCCCCHHHhCCCcc
Confidence            9999887   2345677888999999876543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=94.40  E-value=0.64  Score=50.00  Aligned_cols=56  Identities=13%  Similarity=0.086  Sum_probs=39.4

Q ss_pred             cCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECC
Q 004969          560 SMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD  615 (721)
Q Consensus       560 p~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~D  615 (721)
                      -.++.+++++.||.++.+|.++|+.+.++.-.....-.-+.+..+|..++++.+..
T Consensus       467 TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v~aG~  522 (560)
T d1kv9a2         467 TAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMAGW  522 (560)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECC
T ss_pred             ECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEeCC
Confidence            36788888889999999999999999998842222222355666785566654443

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.36  E-value=0.49  Score=51.17  Aligned_cols=54  Identities=11%  Similarity=0.015  Sum_probs=39.5

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969          561 MDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF  614 (721)
Q Consensus       561 ~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~  614 (721)
                      .++.+++++.||.++-+|.++|+.+.++.-.......-+.|..+|..++++...
T Consensus       474 agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v~~g  527 (571)
T d2ad6a1         474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMYG  527 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEEEEec
Confidence            577888888999999999999999999874233333336666688666655443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.15  E-value=2.6  Score=40.26  Aligned_cols=183  Identities=10%  Similarity=0.040  Sum_probs=110.7

Q ss_pred             CeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEE-eCCCeEEEEEcCCCCCcccccccCcceeEeccCCCeE
Q 004969          476 GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAG-SDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLT  554 (721)
Q Consensus       476 G~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSg-s~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~  554 (721)
                      ..|+-.++.+......++   ....+.+++|. ...+.++-+ ...+.|.-.++......     .....+.......+.
T Consensus        10 ~~I~~~~l~~~~~~~~~~---~~~~~~~id~d-~~~~~lYw~D~~~~~I~~~~l~~~~~~-----~~~~~~~~~~~~~p~   80 (266)
T d1ijqa1          10 HEVRKMTLDRSEYTSLIP---NLRNVVALDTE-VASNRIYWSDLSQRMICSTQLDRAHGV-----SSYDTVISRDIQAPD   80 (266)
T ss_dssp             SSEEEEETTSCCCEEEEC---SCSSEEEEEEE-TTTTEEEEEETTTTEEEEEEC-------------CEEEECSSCSCCC
T ss_pred             CeEEEEECCCCcceeeeC---CCCceEEEEEE-eCCCEEEEEECCCCEEEEEEecCCCCC-----cceEEEEeCCCCCcc
Confidence            358888988665544443   34567899998 445555444 45677777666542210     001111112223466


Q ss_pred             EEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE-CCCcEEEEECCCCCceeEE
Q 004969          555 SVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS-FDQDVKLWDLRQKPIQPCY  632 (721)
Q Consensus       555 sv~~sp~~~~lls~g-~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs-~DgtIrIWDlrs~~~~~~~  632 (721)
                      ++++...++.++.+. ..+.|.+.++........... .......++++|..+.++.+.. ..+.|.-.++.......+.
T Consensus        81 glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~-~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~  159 (266)
T d1ijqa1          81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE-NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV  159 (266)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC-TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred             eEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcC-CCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceeccc
Confidence            788877777777765 467899999986655444443 5567889999987645555542 3456766777654333222


Q ss_pred             EecCCCCeEEEEEecCCCEEEEE-eCCCcEEEEEcCCC
Q 004969          633 TASSSKGNVMVCFSPDDHYLLGK-GSGTSMFVQSLRGD  669 (721)
Q Consensus       633 ~~~~~~~~vsl~fSpdg~~Lasg-s~Dg~I~VWDl~g~  669 (721)
                       ..+-..+..+++++.+..|+.+ ...+.|...++.|.
T Consensus       160 -~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~  196 (266)
T d1ijqa1         160 -TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  196 (266)
T ss_dssp             -CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             -ccccceeeEEEeeccccEEEEecCCcCEEEEEECCCC
Confidence             2333445689999988777665 45678888888764

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.05  E-value=3.3  Score=41.15  Aligned_cols=192  Identities=10%  Similarity=0.139  Sum_probs=102.5

Q ss_pred             EEEEeCCCCCEEEEEEC------------CCeEEEEECCCCeE-EEEeecCCC-----CCCeEEEEEee-CCCC-EEEEE
Q 004969          458 QFEYHPSISCLMVFGTL------------DGEIVVVNHENENI-VSYIPSFGA-----MNSVLGLCWLK-KYPS-KLIAG  517 (721)
Q Consensus       458 ~lafsP~dg~~LasGs~------------DG~I~IWdl~tg~~-i~~l~~~~H-----~~~V~sl~fsp-~d~~-~LaSg  517 (721)
                      .|+..| ++..+++++.            .|.|.++|+.+... ...+...+.     .-...++.... .++. +|++.
T Consensus        39 Di~~~~-dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vv  117 (340)
T d1v04a_          39 DLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV  117 (340)
T ss_dssp             EEEECT-TSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred             eEEECC-CCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEE
Confidence            466677 6665555432            48999999876432 222221111     11234555422 2333 44444


Q ss_pred             e---CCCeEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEe--C-------------CCcEEEEEC
Q 004969          518 S---DNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG--Y-------------SKNIALYDI  579 (721)
Q Consensus       518 s---~DGtVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g--~-------------Dg~IrlWDl  579 (721)
                      .   ...+|.+|++........    +...+.-......+++++..++..+++-.  .             -++..+|..
T Consensus       118 nH~~~~~~ieif~~~~~~~~l~----~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~  193 (340)
T d1v04a_         118 NHPGSSSTVEVFKFQEEEKSLL----HLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY  193 (340)
T ss_dssp             ECSTTCCEEEEEEEETTTTEEE----EEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEE
T ss_pred             eccCCCceeEEEEEeCCCCeEE----EEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEE
Confidence            3   456788888865432111    11122112223468888888777666621  0             123444544


Q ss_pred             CCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCce-eEEEecCCCCeEEEEEec-CCCEEEEEe
Q 004969          580 NSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQ-PCYTASSSKGNVMVCFSP-DDHYLLGKG  656 (721)
Q Consensus       580 ~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~-~~~~~~~~~~~vsl~fSp-dg~~Lasgs  656 (721)
                      ..++......  .-...+.|+++|++..++++-+..+.|++|++...... ......-...+=.+.+.+ +|.+.+++.
T Consensus       194 ~~~~~~~~~~--~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~~  270 (340)
T d1v04a_         194 SPNDVRVVAE--GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCH  270 (340)
T ss_dssp             CSSCEEEEEE--EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred             cCCceEEEcC--CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEEC
Confidence            4444322222  34568999999999666677778899999998754322 222222222222678876 555555543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=93.86  E-value=0.051  Score=54.75  Aligned_cols=107  Identities=20%  Similarity=0.237  Sum_probs=51.8

Q ss_pred             hcccceEeeccCCchhhHHHHHhhcCCcc----ceEeeccccccccc------ccccccceeeEEecccccccccccccc
Q 004969           98 IDQKLRVVDLHDSSFGKDFIRNLSQRGLM----CEVLNLRSSRFRKL------NMIGEFKRIHTLNLDYSTSLTSFKEDC  167 (721)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~  167 (721)
                      -+.+|+.++|..+.++.+-+..+...++.    =+.|+|+.|+|-.-      ..+...+.|++|+|+ .+.|+.-...-
T Consensus       184 ~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls-~n~i~~~g~~~  262 (344)
T d2ca6a1         184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN-DCLLSARGAAA  262 (344)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT-TCCCCHHHHHH
T ss_pred             hhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhh-cCccCchhhHH
Confidence            34566666666666655443332222221    24466666665332      123455566666666 34455432222


Q ss_pred             cc------cccccchhccccccchhhh--HHHHHh-hcCCcchhhcc
Q 004969          168 FS------CMPNLICLSMCETRVGNLW--TTIAAL-SKLPSLAELRF  205 (721)
Q Consensus       168 ~~------~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~  205 (721)
                      +.      ..++|+.|.|.+|+|..-.  .-..+| .|+++|+.|.+
T Consensus       263 l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l  309 (344)
T d2ca6a1         263 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL  309 (344)
T ss_dssp             HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred             HHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEEC
Confidence            21      2355666666666664311  112233 25666666654

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.13  E-value=3.1  Score=44.72  Aligned_cols=54  Identities=11%  Similarity=0.076  Sum_probs=38.6

Q ss_pred             cCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEE
Q 004969          560 SMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS  613 (721)
Q Consensus       560 p~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs  613 (721)
                      ..++.+++|+.||.++.+|.++|+.+.++.-.....-.-+.|..+|..+++...
T Consensus       482 TagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYvav~~  535 (596)
T d1w6sa_         482 TAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYY  535 (596)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             ecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEEEEEe
Confidence            357788888899999999999999999987322222223556667855666544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.94  E-value=0.039  Score=50.00  Aligned_cols=95  Identities=18%  Similarity=0.261  Sum_probs=49.2

Q ss_pred             HHHHHHhcccceEeeccC-CchhhHHHHHhhcCCccceEeecccccccccccccccceeeEEeccccccccccc----cc
Q 004969           92 LSLMHAIDQKLRVVDLHD-SSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFK----ED  166 (721)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~  166 (721)
                      ++-++.=+.+|+.++|.+ ..++.+.+..|+.. +.                  ....|++|+|. .+.|+.-.    ..
T Consensus         7 l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~-L~------------------~n~~L~~L~Ls-~n~l~~~~~~~la~   66 (167)
T d1pgva_           7 INRLREDDTDLKEVNINNMKRVSKERIRSLIEA-AC------------------NSKHIEKFSLA-NTAISDSEARGLIE   66 (167)
T ss_dssp             HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHH-HT------------------TCSCCCEEECT-TSCCBHHHHTTHHH
T ss_pred             HHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHH-Hh------------------hCCccceeecc-ccccchhHHHHHhh
Confidence            333444467788888876 35777777666431 11                  11223344444 33333110    13


Q ss_pred             ccccccccchhccccccchh--hhHHHHHhhcCCcchhhccc
Q 004969          167 CFSCMPNLICLSMCETRVGN--LWTTIAALSKLPSLAELRFQ  206 (721)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  206 (721)
                      ++...+.|+.|.|.+|+|..  +..-+.||.+-++|++|++.
T Consensus        67 ~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~  108 (167)
T d1pgva_          67 LIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKAD  108 (167)
T ss_dssp             HHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECC
T ss_pred             hhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECC
Confidence            34455666666666666654  22334466666666666553

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=92.59  E-value=1.2  Score=47.99  Aligned_cols=54  Identities=6%  Similarity=0.019  Sum_probs=37.3

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC
Q 004969          561 MDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF  614 (721)
Q Consensus       561 ~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~  614 (721)
                      .++.+++++.||.++.+|.++|+.+.++.-.....-.-+.|..+|..+++..+.
T Consensus       487 agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v~~G  540 (573)
T d1kb0a2         487 AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVG  540 (573)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEeC
Confidence            678888888999999999999999999873211111124555577555555443

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.41  E-value=5.5  Score=38.98  Aligned_cols=112  Identities=12%  Similarity=0.191  Sum_probs=68.7

Q ss_pred             EEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccc
Q 004969          458 QFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRG  537 (721)
Q Consensus       458 ~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~  537 (721)
                      +.--+| ..+.||.-+ ..++.|+|+++.+.++.+..   ...|.--.|-  +.+.|+-.+.. .|.-|++++.....+.
T Consensus        67 sAIMhP-~~~IiALra-g~~LQiFnletK~klks~~~---~e~VvfWkWi--s~~~L~lVT~t-aVYHW~~~g~s~P~k~  138 (327)
T d1utca2          67 SAIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTM---TDDVTFWKWI--SLNTVALVTDN-AVYHWSMEGESQPVKM  138 (327)
T ss_dssp             EEEECS-SSSEEEEEE-TTEEEEEETTTTEEEEEEEC---SSCCCEEEES--SSSEEEEECSS-EEEEEESSSSCCCEEE
T ss_pred             hhhcCC-CCcEEEEec-CCeEEEEehhHhhhhceEEc---CCCcEEEEec--CCCEEEEEcCC-ceEEEcccCCCCchhh
Confidence            344678 777777766 56899999999999888764   3467777885  56667666544 8999999764432222


Q ss_pred             cccCcceeEeccCCCeEEEEEecCCCEEEEEe---C----CCcEEEEECCC
Q 004969          538 MHYGAGTVTFDEFDQLTSVHVNSMDELFLASG---Y----SKNIALYDINS  581 (721)
Q Consensus       538 ~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g---~----Dg~IrlWDl~s  581 (721)
                      ...+..   + ...+|..-..+++..+++..|   .    .|.+.+|..+.
T Consensus       139 fdR~~~---L-~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er  185 (327)
T d1utca2         139 FDRHSS---L-AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR  185 (327)
T ss_dssp             EECCGG---G-TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT
T ss_pred             hhhccc---c-cCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc
Confidence            111111   0 123455555556666655544   1    25566776654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=92.21  E-value=0.02  Score=57.07  Aligned_cols=76  Identities=18%  Similarity=0.353  Sum_probs=42.7

Q ss_pred             eEeeccc-cccc-cc-ccccccceeeEEecccccccccccccccccccccchhccccccchhhhHHHHHhhcCCcchhhc
Q 004969          128 EVLNLRS-SRFR-KL-NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELR  204 (721)
Q Consensus       128 ~~~~~~~-~~~~-~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (721)
                      +.|||++ |.|. .+ .-++.+.+|++|+|+ .|.|+.+...-|..+++|+.|.+..|++....  -..+.+|+.|+.|.
T Consensus        79 ~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls-~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~--p~~l~~l~~L~~l~  155 (313)
T d1ogqa_          79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYIT-HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL--PPSISSLPNLVGIT  155 (313)
T ss_dssp             SEEEEEEETTEESCCCGGGGGCTTCSEEEEE-EECCEEECCGGGGGCTTCCEEECCSSEEESCC--CGGGGGCTTCCEEE
T ss_pred             cccccccccccccccccccccccccchhhhc-cccccccccccccchhhhcccccccccccccC--chhhccCcccceee
Confidence            3456653 4444 22 235566666666666 55666666666666666666666666554221  13455666666665


Q ss_pred             cc
Q 004969          205 FQ  206 (721)
Q Consensus       205 ~~  206 (721)
                      +.
T Consensus       156 l~  157 (313)
T d1ogqa_         156 FD  157 (313)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=91.76  E-value=0.44  Score=47.48  Aligned_cols=112  Identities=16%  Similarity=0.123  Sum_probs=71.5

Q ss_pred             EEEecCCCEEEEEeCC-----C------cEEEEECCCCcEE--EEEccccCCCeEEEEEcCCCCcEEEEEECC-CcEEEE
Q 004969          556 VHVNSMDELFLASGYS-----K------NIALYDINSGRRL--QVFADMHKEHINVVKFSNHSPSIFATSSFD-QDVKLW  621 (721)
Q Consensus       556 v~~sp~~~~lls~g~D-----g------~IrlWDl~s~~~v--~~l~~~h~~~V~sI~fsPdg~~lLaSgs~D-gtIrIW  621 (721)
                      .....++..++.||.+     +      .+.+||..+++-.  ......|.....+.++.++| .+++.|+.+ ..+.+|
T Consensus        25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g-~i~v~Gg~~~~~~~~y  103 (387)
T d1k3ia3          25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG-QIVVTGGNDAKKTSLY  103 (387)
T ss_dssp             EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS-CEEEECSSSTTCEEEE
T ss_pred             EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCC-cEEEeecCCCcceeEe
Confidence            3343456666667642     1      3779999987542  22322244445567888998 788887665 579999


Q ss_pred             ECCCCCceeEEEecCCCCeEEEEEecCCCEEEEEeCC------CcEEEEEcCC
Q 004969          622 DLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLGKGSG------TSMFVQSLRG  668 (721)
Q Consensus       622 Dlrs~~~~~~~~~~~~~~~vsl~fSpdg~~Lasgs~D------g~I~VWDl~g  668 (721)
                      |..+......-...........+..+||++++.|+.+      ..+.+||...
T Consensus       104 d~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~  156 (387)
T d1k3ia3         104 DSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS  156 (387)
T ss_dssp             EGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             cCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCC
Confidence            9998755433333222222367788899999988753      3578888763

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=91.46  E-value=7.7  Score=38.68  Aligned_cols=201  Identities=10%  Similarity=0.191  Sum_probs=111.6

Q ss_pred             EEEeCC--CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEe---eCCC--CEEEEEe-CC---CeEEEEE
Q 004969          459 FEYHPS--ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWL---KKYP--SKLIAGS-DN---GSLKLYD  527 (721)
Q Consensus       459 lafsP~--dg~~LasGs~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fs---p~d~--~~LaSgs-~D---GtVrIWD  527 (721)
                      |-++|.  +..+++.....+-|++||++ |+.+..+..    +.+..|..-   +..+  .-++.++ .+   .+|.+|.
T Consensus        31 IW~n~~~p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~----Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~  105 (353)
T d1h6la_          31 IWLDPKNPQNSKLITTNKKSGLAVYSLE-GKMLHSYHT----GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYA  105 (353)
T ss_dssp             EECCSSCGGGCEEEEEETTSCCEEEETT-CCEEEECCS----SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEE
T ss_pred             EEcCCCCcCccEEEEEcCcCCEEEEcCC-CcEEEeccc----CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEE
Confidence            444443  45677777777779999996 888877652    456655532   1122  2344444 22   3688898


Q ss_pred             cCCCCCcccccccCcceeEeccCCCeEEEEE--ecCCC--EEEEEeCCCcEEEEECC---CC----cEEEEEccccCCCe
Q 004969          528 IRHMPPSIRGMHYGAGTVTFDEFDQLTSVHV--NSMDE--LFLASGYSKNIALYDIN---SG----RRLQVFADMHKEHI  596 (721)
Q Consensus       528 i~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~--sp~~~--~lls~g~Dg~IrlWDl~---s~----~~v~~l~~~h~~~V  596 (721)
                      +......+..+...... .......++.+|+  ++.++  ++++...+|.+..|.+.   .+    +.++.+.  -...+
T Consensus       106 id~~~~~l~~~~~~~~p-~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~--~~~q~  182 (353)
T d1h6la_         106 IDGKNGTLQSITDPNRP-IASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK--MNSQT  182 (353)
T ss_dssp             EETTTTEEEECSCSSSC-EECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE--CSSCE
T ss_pred             ecCcccccccccccccc-cccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC--CCCcc
Confidence            86533322222211111 1112234667776  55544  44555678888888663   33    3556665  45678


Q ss_pred             EEEEEcCCCCcEEEEEECCCcEEEEECCC--CCcee-EEEecC--CCCeE---EEEEecCCC-EEEEEe-CCCcEEEEEc
Q 004969          597 NVVKFSNHSPSIFATSSFDQDVKLWDLRQ--KPIQP-CYTASS--SKGNV---MVCFSPDDH-YLLGKG-SGTSMFVQSL  666 (721)
Q Consensus       597 ~sI~fsPdg~~lLaSgs~DgtIrIWDlrs--~~~~~-~~~~~~--~~~~v---sl~fSpdg~-~Lasgs-~Dg~I~VWDl  666 (721)
                      ..+.+.+.. ..|..+-.+.-|..++..-  ..... +....+  -.+.+   .+.-.+++. ||++++ .+++..|||.
T Consensus       183 EGCVvDde~-~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr  261 (353)
T d1h6la_         183 EGMAADDEY-GSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYER  261 (353)
T ss_dssp             EEEEEETTT-TEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred             ceEEEeCCC-CcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEec
Confidence            899999887 5777777776665555542  11111 222221  12223   333444443 555444 5778999998


Q ss_pred             CC
Q 004969          667 RG  668 (721)
Q Consensus       667 ~g  668 (721)
                      .+
T Consensus       262 ~~  263 (353)
T d1h6la_         262 QG  263 (353)
T ss_dssp             ST
T ss_pred             CC
Confidence            74

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=90.89  E-value=0.8  Score=45.46  Aligned_cols=139  Identities=9%  Similarity=0.008  Sum_probs=76.9

Q ss_pred             eEEEEEcCCCCCcccccccCcceeEeccCCCeEEEEEecCCCEEEEEeCC-CcEEEEECCCCcEEEEEccccCCCeEEEE
Q 004969          522 SLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS-KNIALYDINSGRRLQVFADMHKEHINVVK  600 (721)
Q Consensus       522 tVrIWDi~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~D-g~IrlWDl~s~~~v~~l~~~h~~~V~sI~  600 (721)
                      .+.+||..++.-...      ......+........+.+++..++.|+.+ ..+.+||..+.+....-.......-.+.+
T Consensus        53 ~~~~yd~~t~~w~~~------~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~  126 (387)
T d1k3ia3          53 LTSSWDPSTGIVSDR------TVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSA  126 (387)
T ss_dssp             EEEEECTTTCCBCCC------EEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEE
T ss_pred             EEEEEECCCCcEeec------CCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCccccccccccccccccee
Confidence            367899988654211      01111111122345666788777777654 67999999987654322111222334567


Q ss_pred             EcCCCCcEEEEEECC------CcEEEEECCCCCceeEEEec-------CCC------CeEEEEEecCCCEEEEEeCCCcE
Q 004969          601 FSNHSPSIFATSSFD------QDVKLWDLRQKPIQPCYTAS-------SSK------GNVMVCFSPDDHYLLGKGSGTSM  661 (721)
Q Consensus       601 fsPdg~~lLaSgs~D------gtIrIWDlrs~~~~~~~~~~-------~~~------~~vsl~fSpdg~~Lasgs~Dg~I  661 (721)
                      ..++| .+++.|+.+      ..+.+||..+.....+-...       .+.      ....+...++|+.++.++..+.+
T Consensus       127 ~~~dG-~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~  205 (387)
T d1k3ia3         127 TMSDG-RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMN  205 (387)
T ss_dssp             ECTTS-CEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEE
T ss_pred             eecCC-ceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcE
Confidence            77788 688887653      36899999886443211100       000      01123334567777777666666


Q ss_pred             EEEEcC
Q 004969          662 FVQSLR  667 (721)
Q Consensus       662 ~VWDl~  667 (721)
                      .+++..
T Consensus       206 ~~~~~~  211 (387)
T d1k3ia3         206 WYYTSG  211 (387)
T ss_dssp             EEECST
T ss_pred             EecCcc
Confidence            665544

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.56  E-value=5.9  Score=40.01  Aligned_cols=176  Identities=13%  Similarity=0.066  Sum_probs=97.2

Q ss_pred             eEEEEEeeCCCCEEEEEeCCCeEEEEEcCCCCCcccccc-cCcceeEeccCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q 004969          501 VLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMH-YGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDI  579 (721)
Q Consensus       501 V~sl~fsp~d~~~LaSgs~DGtVrIWDi~~~~~~~~~~~-~~~~~~~~~~~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl  579 (721)
                      ..-++.+ ....++++|+.++ +.|-.+..-........ +....... .-..|..++++.  +.+++. .++.+..++.
T Consensus        39 ~~LLAVs-n~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~-~ip~v~~vafs~--d~l~v~-~~~~l~~~~~  112 (381)
T d1xipa_          39 LQNLDIS-NSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPDVIFVCFHG--DQVLVS-TRNALYSLDL  112 (381)
T ss_dssp             CBCEEEE-TTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTTEEEEEEET--TEEEEE-ESSEEEEEES
T ss_pred             cceEEEe-CCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceecc-CCCCeEEEEeeC--CEEEEE-eCCCEEEEEe
Confidence            4456665 5566787888775 55666432100000000 00001111 113578889953  445444 4566888888


Q ss_pred             CCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCCCCceeEE----EecCCCCeEEEEEecCCCEEEEE
Q 004969          580 NSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCY----TASSSKGNVMVCFSPDDHYLLGK  655 (721)
Q Consensus       580 ~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~DgtIrIWDlrs~~~~~~~----~~~~~~~~vsl~fSpdg~~Lasg  655 (721)
                      .+-........ -..++..+.++|.   .++....++.+-++++..++..++.    .+.-..+..+++|++.|..++++
T Consensus       113 ~~l~~~~~~~~-~~~~~~~~~~~p~---~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~  188 (381)
T d1xipa_         113 EELSEFRTVTS-FEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAW  188 (381)
T ss_dssp             SSTTCEEEEEE-CSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEE
T ss_pred             ecccccccccc-ccccccceecCCc---eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEe
Confidence            76544433332 4567888888875   4666777899999999987654432    12223445578899888888887


Q ss_pred             eCCCcEEEE-EcCCCc-cc---ccccCeEEEEECCCC
Q 004969          656 GSGTSMFVQ-SLRGDP-FR---DFNMSILAAYTRPSS  687 (721)
Q Consensus       656 s~Dg~I~VW-Dl~g~~-l~---~~~~~V~~v~fsP~~  687 (721)
                      ..++ ..+- ++...+ +.   .....|.++.|--+.
T Consensus       189 ~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~  224 (381)
T d1xipa_         189 RNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQ  224 (381)
T ss_dssp             ETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSS
T ss_pred             CCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCc
Confidence            4332 2221 222111 11   123467778876655

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=87.27  E-value=7.4  Score=39.96  Aligned_cols=53  Identities=19%  Similarity=0.350  Sum_probs=38.8

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEECCCCeEEEEeec------CCCCCCeEEEEEee
Q 004969          455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPS------FGAMNSVLGLCWLK  508 (721)
Q Consensus       455 ~V~~lafsP~dg~~LasGs~DG~I~IWdl~tg~~i~~l~~------~~H~~~V~sl~fsp  508 (721)
                      .+++|+|.| +++++++--..|.|++++..++........      ..-.....+|+++|
T Consensus        28 ~P~~la~~p-dg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~P   86 (450)
T d1crua_          28 KPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHP   86 (450)
T ss_dssp             SEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECT
T ss_pred             CceEEEEeC-CCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCC
Confidence            489999999 888888766689999999887765433221      11235678999985

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=86.89  E-value=0.31  Score=43.43  Aligned_cols=127  Identities=13%  Similarity=0.160  Sum_probs=71.7

Q ss_pred             CCchhHHHHHhhcCCCcceeeEeecCCccccchHHHHHHHHHh--cccceEeeccCCchhhHHHHHhhcCCccceEeecc
Q 004969           56 IDFQPLLEVCMQIGATEIEAVDVRSGTSCMLTGEFALSLMHAI--DQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLR  133 (721)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (721)
                      .|+..+|+-+.+= .+.+..+++.+  ...+..+-+..+++++  |..|+.++|+++.+|.+.+..|++. +.+      
T Consensus         3 ~~i~~~l~~~~~~-~~~L~~L~L~~--~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~-l~~------   72 (166)
T d1io0a_           3 TDVEETLKRIQNN-DPDLEEVNLNN--IMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEM-LKV------   72 (166)
T ss_dssp             CCHHHHHHHHHTT-CTTCCEEECTT--CTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHH-HHH------
T ss_pred             ccHHHHHHHHHhc-CCCCcEEEcCC--CCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHH-Hhh------
Confidence            5666666666553 35777777632  2456777777777765  7889999999988888877766432 111      


Q ss_pred             cccccccccccccceeeEEecccccccccccc----cccccccccch--hccccccchhhh-H-HHHHhhcCCcchhhcc
Q 004969          134 SSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKE----DCFSCMPNLIC--LSMCETRVGNLW-T-TIAALSKLPSLAELRF  205 (721)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~  205 (721)
                                  -+.|..|.+. ++.++.-.-    ..+.-+|+|+.  |++|+|.+.+-= . =..+|.+.+.|++|.+
T Consensus        73 ------------~~~l~~l~l~-~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l  139 (166)
T d1io0a_          73 ------------NNTLKSLNVE-SNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGY  139 (166)
T ss_dssp             ------------CSSCCEEECC-SSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred             ------------cccchhhhhc-cccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeC
Confidence                        1123334444 233322110    22334566653  566666665410 0 1235667777777754

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=85.11  E-value=19  Score=35.26  Aligned_cols=143  Identities=13%  Similarity=0.175  Sum_probs=78.5

Q ss_pred             CCeEEEEEcCCCCCcccccccCcc---eeEeccCCCeEEEEE--ecCCC-EEEEEe---CCCcEEEEECCCCc--E--EE
Q 004969          520 NGSLKLYDIRHMPPSIRGMHYGAG---TVTFDEFDQLTSVHV--NSMDE-LFLASG---YSKNIALYDINSGR--R--LQ  586 (721)
Q Consensus       520 DGtVrIWDi~~~~~~~~~~~~~~~---~~~~~~~~~V~sv~~--sp~~~-~lls~g---~Dg~IrlWDl~s~~--~--v~  586 (721)
                      .|.|.++|+.+.......+.....   ...|    .-..+++  ..++. .+++..   ...+|.+|++....  .  +.
T Consensus        67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f----~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~  142 (340)
T d1v04a_          67 SGKILLMDLNEKEPAVSELEIIGNTLDISSF----NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLK  142 (340)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSSCGGGC----CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEE
T ss_pred             CCeEEEEecCCCCCcceEEEecCCCCCCcce----eccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEe
Confidence            488889998875543222211000   0001    1123333  23444 344443   35678888876432  2  23


Q ss_pred             EEccccCCCeEEEEEcCCCCcEEEEEE--C-------------CCcEEEEECCCCCceeEEEecCCCCeEEEEEecCCCE
Q 004969          587 VFADMHKEHINVVKFSNHSPSIFATSS--F-------------DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHY  651 (721)
Q Consensus       587 ~l~~~h~~~V~sI~fsPdg~~lLaSgs--~-------------DgtIrIWDlrs~~~~~~~~~~~~~~~vsl~fSpdg~~  651 (721)
                      ++........+.+++..++ .+++|-.  .             -++..+|....+.....  ..+-..+..++++||+++
T Consensus       143 ~v~~~~~~~pNDv~~~~~g-~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~--~~~l~~pNGI~~s~d~~~  219 (340)
T d1v04a_         143 TIRHKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVV--AEGFDFANGINISPDGKY  219 (340)
T ss_dssp             EECCTTCSSEEEEEEEETT-EEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEE--EEEESSEEEEEECTTSSE
T ss_pred             ecCCccccCccceEEecCC-CEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEE--cCCCCccceeEECCCCCE
Confidence            3333234567899998888 6777731  1             12344555544433222  233345568999999988


Q ss_pred             EEEEe-CCCcEEEEEcCCC
Q 004969          652 LLGKG-SGTSMFVQSLRGD  669 (721)
Q Consensus       652 Lasgs-~Dg~I~VWDl~g~  669 (721)
                      |+.+. ..+.|++|++.+.
T Consensus       220 lyVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         220 VYIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             EEEEEGGGTEEEEEEECTT
T ss_pred             EEEEeCCCCeEEEEEeCCC
Confidence            86664 5678999998743

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.01  E-value=22  Score=34.47  Aligned_cols=157  Identities=13%  Similarity=0.137  Sum_probs=85.2

Q ss_pred             eEEEEEeCCCCCEEEEEE-------CCCeEEEEECCCCeEEEEeecCCCCCCeEEEEEe--eCCCCEEEE---EeCCCeE
Q 004969          456 PRQFEYHPSISCLMVFGT-------LDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWL--KKYPSKLIA---GSDNGSL  523 (721)
Q Consensus       456 V~~lafsP~dg~~LasGs-------~DG~I~IWdl~tg~~i~~l~~~~H~~~V~sl~fs--p~d~~~LaS---gs~DGtV  523 (721)
                      |..-..++ +.++++..+       -.|.+.+|..+.+ ..+.+.  ||...-..+...  +.....++-   +...+.+
T Consensus       150 IInY~~d~-~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ie--Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kL  225 (327)
T d1utca2         150 IINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIE--GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKL  225 (327)
T ss_dssp             EEEEEECT-TSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEEC--CSEEEEEEECCTTCSSCEEEEEEEEEETTEEEE
T ss_pred             EEEEEECC-CCCEEEEEeEecCCCceeEEEEEEEeccC-cCcccc--ceeeeeEEEEcCCCCCCceEEEEEECCCCCcEE
Confidence            44455555 566655432       2378899998854 333344  443322222210  000011111   2233789


Q ss_pred             EEEEcCCCCCcccccccCcceeEecc---CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEE
Q 004969          524 KLYDIRHMPPSIRGMHYGAGTVTFDE---FDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVK  600 (721)
Q Consensus       524 rIWDi~~~~~~~~~~~~~~~~~~~~~---~~~V~sv~~sp~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~  600 (721)
                      +|.++................+.+..   .+--.++.+++..+.++..+.-|.+++||+.++.++..-+- ....|...+
T Consensus       226 hIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRI-s~~~iF~~a  304 (327)
T d1utca2         226 HIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI-SGETIFVTA  304 (327)
T ss_dssp             EEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEE
T ss_pred             EEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeec-CCCceEEec
Confidence            99998874321111111111122222   12356788889999999999999999999999999877664 455555444


Q ss_pred             EcCCCCcEEEEEECCCcE
Q 004969          601 FSNHSPSIFATSSFDQDV  618 (721)
Q Consensus       601 fsPdg~~lLaSgs~DgtI  618 (721)
                      -+... .-+++-..+|.|
T Consensus       305 ~~~~~-~Gi~~VNr~GqV  321 (327)
T d1utca2         305 PHEAT-AGIIGVNRKGQV  321 (327)
T ss_dssp             EETTT-TEEEEEETTSEE
T ss_pred             cCCCC-ceEEEECCCCeE
Confidence            44443 233334455544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=81.00  E-value=1.4  Score=39.06  Aligned_cols=21  Identities=10%  Similarity=0.248  Sum_probs=10.9

Q ss_pred             cccceEeeccCCchhhHHHHH
Q 004969           99 DQKLRVVDLHDSSFGKDFIRN  119 (721)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~  119 (721)
                      |.+|+.++|.++.+|-+....
T Consensus        43 n~~L~~L~Ls~n~l~~~~~~~   63 (167)
T d1pgva_          43 SKHIEKFSLANTAISDSEARG   63 (167)
T ss_dssp             CSCCCEEECTTSCCBHHHHTT
T ss_pred             CCccceeeccccccchhHHHH
Confidence            455555555555555444443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.83  E-value=5.1  Score=40.66  Aligned_cols=100  Identities=13%  Similarity=0.127  Sum_probs=62.3

Q ss_pred             EEEEEecCCCEEEEEeC-C----CcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEEEC--------------
Q 004969          554 TSVHVNSMDELFLASGY-S----KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF--------------  614 (721)
Q Consensus       554 ~sv~~sp~~~~lls~g~-D----g~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSgs~--------------  614 (721)
                      ..++++|++..++.+-+ +    ..++++|+.+++.+....  .......++|.+++..++.+.-.              
T Consensus       128 ~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i--~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~  205 (430)
T d1qfma1         128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL--ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN  205 (430)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE--EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             cceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc--ccccccceEEcCCCCEEEEEEeccccCcccccccccC
Confidence            44567889888886532 2    469999999998765322  11223568899999444444321              


Q ss_pred             -CCcEEEEECCCCCceeEEEecC--CCCeE-EEEEecCCCEEEEE
Q 004969          615 -DQDVKLWDLRQKPIQPCYTASS--SKGNV-MVCFSPDDHYLLGK  655 (721)
Q Consensus       615 -DgtIrIWDlrs~~~~~~~~~~~--~~~~v-sl~fSpdg~~Lasg  655 (721)
                       ...|..|.+.+...........  ..... .+..++++++++..
T Consensus       206 ~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~  250 (430)
T d1qfma1         206 LHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLS  250 (430)
T ss_dssp             CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred             CcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEE
Confidence             1257788887764443333332  22233 67789999998754

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.37  E-value=2.3  Score=45.60  Aligned_cols=53  Identities=11%  Similarity=0.171  Sum_probs=38.7

Q ss_pred             cCCCEEEEEeCCCcEEEEECCCCcEEEEEccccCCCeEEEEEcCCCCcEEEEE
Q 004969          560 SMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS  612 (721)
Q Consensus       560 p~~~~lls~g~Dg~IrlWDl~s~~~v~~l~~~h~~~V~sI~fsPdg~~lLaSg  612 (721)
                      ..++.+++++.||.++-+|.++|+.+.++.-.....-.-+.|..+|..+++..
T Consensus       495 tagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~i~  547 (582)
T d1flga_         495 TAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT  547 (582)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             EcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEE
Confidence            46788888889999999999999999998842222222366777885555544